Query 007533
Match_columns 599
No_of_seqs 461 out of 2815
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 11:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2387 CTP synthase (UTP-ammo 100.0 2E-219 3E-224 1693.2 44.0 557 1-557 1-560 (585)
2 COG0504 PyrG CTP synthase (UTP 100.0 9E-212 2E-216 1664.6 48.0 527 1-549 1-531 (533)
3 PLN02327 CTP synthase 100.0 3E-208 5E-213 1683.7 51.8 553 1-554 1-556 (557)
4 PRK05380 pyrG CTP synthetase; 100.0 4E-197 9E-202 1593.7 50.9 526 1-548 2-530 (533)
5 TIGR00337 PyrG CTP synthase. C 100.0 4E-195 8E-200 1578.2 51.0 522 1-543 1-525 (525)
6 PF06418 CTP_synth_N: CTP synt 100.0 1E-140 3E-145 1056.1 17.8 274 1-282 1-276 (276)
7 cd03113 CTGs CTP synthetase (C 100.0 2E-131 4E-136 984.0 22.9 251 2-258 1-251 (255)
8 PRK06186 hypothetical protein; 100.0 1E-64 2.2E-69 506.1 23.7 228 295-546 1-228 (229)
9 cd01746 GATase1_CTP_Synthase T 100.0 2.3E-46 5E-51 377.5 22.5 233 296-541 1-235 (235)
10 COG0505 CarA Carbamoylphosphat 100.0 4.2E-38 9.1E-43 326.8 15.6 278 202-548 67-366 (368)
11 PRK12564 carbamoyl phosphate s 100.0 2.5E-35 5.5E-40 313.4 16.1 271 203-543 69-359 (360)
12 TIGR01368 CPSaseIIsmall carbam 100.0 7.2E-35 1.6E-39 309.5 16.7 274 202-545 64-357 (358)
13 PRK12838 carbamoyl phosphate s 100.0 4.8E-34 1E-38 302.8 17.5 272 203-546 67-352 (354)
14 CHL00197 carA carbamoyl-phosph 100.0 1.6E-32 3.4E-37 293.3 13.6 276 202-547 70-377 (382)
15 PLN02771 carbamoyl-phosphate s 100.0 3.8E-32 8.2E-37 291.6 14.2 265 202-537 120-415 (415)
16 PF00117 GATase: Glutamine ami 99.9 1.2E-26 2.7E-31 224.8 13.2 181 312-543 11-192 (192)
17 COG0118 HisH Glutamine amidotr 99.9 3E-26 6.6E-31 223.3 15.4 190 296-544 2-203 (204)
18 cd01744 GATase1_CPSase Small c 99.9 8.1E-25 1.8E-29 211.6 18.9 176 298-541 1-178 (178)
19 COG2071 Predicted glutamine am 99.9 3.6E-25 7.8E-30 220.8 15.1 167 354-547 54-241 (243)
20 KOG0370 Multifunctional pyrimi 99.9 4.2E-25 9.1E-30 247.4 14.9 293 177-549 49-357 (1435)
21 PLN02335 anthranilate synthase 99.9 2.7E-24 5.9E-29 215.5 19.2 197 294-548 17-217 (222)
22 PRK08007 para-aminobenzoate sy 99.9 3.5E-24 7.6E-29 209.1 18.0 182 298-542 2-186 (187)
23 PRK11366 puuD gamma-glutamyl-g 99.9 2.1E-23 4.5E-28 213.0 20.6 165 356-547 57-247 (254)
24 PRK06895 putative anthranilate 99.9 2.2E-23 4.8E-28 203.6 19.6 186 296-543 2-188 (190)
25 COG0512 PabA Anthranilate/para 99.9 1.7E-23 3.8E-28 202.9 18.6 188 296-543 2-190 (191)
26 TIGR00888 guaA_Nterm GMP synth 99.9 1.9E-23 4E-28 203.3 18.2 185 298-547 1-187 (188)
27 PRK05670 anthranilate synthase 99.9 2.1E-23 4.6E-28 203.4 18.5 185 298-544 2-188 (189)
28 CHL00101 trpG anthranilate syn 99.9 2.4E-23 5.2E-28 203.6 17.9 186 298-544 2-189 (190)
29 TIGR00566 trpG_papA glutamine 99.9 3.5E-23 7.6E-28 202.2 19.1 184 298-542 2-187 (188)
30 PRK07649 para-aminobenzoate/an 99.9 7.1E-23 1.5E-27 201.4 18.0 188 298-547 2-191 (195)
31 cd01743 GATase1_Anthranilate_S 99.9 1.6E-22 3.4E-27 196.0 18.3 183 298-541 1-184 (184)
32 PRK06774 para-aminobenzoate sy 99.9 1.5E-22 3.2E-27 197.8 18.0 183 298-542 2-190 (191)
33 PRK07765 para-aminobenzoate sy 99.9 4.2E-22 9.1E-27 198.6 19.4 194 296-549 1-196 (214)
34 PRK00758 GMP synthase subunit 99.9 4.3E-22 9.3E-27 193.2 18.9 179 298-545 2-182 (184)
35 cd01742 GATase1_GMP_Synthase T 99.9 2.1E-22 4.5E-27 194.0 16.3 181 298-541 1-181 (181)
36 PRK08857 para-aminobenzoate sy 99.9 1.1E-21 2.3E-26 192.3 18.7 185 298-543 2-192 (193)
37 PRK03619 phosphoribosylformylg 99.9 9.6E-22 2.1E-26 196.7 16.3 195 296-542 1-218 (219)
38 TIGR01823 PabB-fungal aminodeo 99.9 1.9E-21 4E-26 224.2 20.2 199 294-548 4-208 (742)
39 PLN02347 GMP synthetase 99.9 2.9E-21 6.2E-26 215.4 20.3 191 297-551 12-209 (536)
40 PF07722 Peptidase_C26: Peptid 99.9 5.2E-22 1.1E-26 198.3 11.1 170 313-525 28-217 (217)
41 PRK05637 anthranilate synthase 99.9 9.8E-21 2.1E-25 188.2 19.1 199 297-546 3-207 (208)
42 PRK13170 hisH imidazole glycer 99.9 8.3E-21 1.8E-25 186.7 17.3 187 296-542 1-195 (196)
43 TIGR01815 TrpE-clade3 anthrani 99.9 8E-21 1.7E-25 217.6 19.8 193 294-546 515-710 (717)
44 PRK13566 anthranilate synthase 99.9 9.1E-21 2E-25 217.5 20.0 193 293-545 524-719 (720)
45 cd01745 GATase1_2 Subgroup of 99.9 1.1E-20 2.3E-25 184.8 15.9 149 312-541 22-189 (189)
46 PRK13146 hisH imidazole glycer 99.8 3.5E-20 7.5E-25 184.1 17.3 196 296-544 2-208 (209)
47 CHL00188 hisH imidazole glycer 99.8 3.4E-20 7.4E-25 184.6 17.0 192 296-543 2-209 (210)
48 PRK00074 guaA GMP synthase; Re 99.8 2.6E-20 5.7E-25 207.2 17.5 189 297-551 5-196 (511)
49 PRK14607 bifunctional glutamin 99.8 7.3E-20 1.6E-24 204.7 18.1 188 298-546 2-191 (534)
50 PRK14004 hisH imidazole glycer 99.8 2.8E-19 6E-24 178.1 17.8 186 298-543 2-209 (210)
51 PRK13141 hisH imidazole glycer 99.8 3.8E-19 8.3E-24 175.5 18.1 194 297-546 1-204 (205)
52 PRK13142 hisH imidazole glycer 99.8 1.7E-19 3.7E-24 177.1 13.4 175 298-542 2-186 (192)
53 PLN02889 oxo-acid-lyase/anthra 99.8 1E-18 2.2E-23 203.0 19.7 196 294-548 80-339 (918)
54 PRK13143 hisH imidazole glycer 99.8 2.4E-18 5.2E-23 169.6 19.2 194 296-544 1-198 (200)
55 PRK13152 hisH imidazole glycer 99.8 1.9E-18 4.1E-23 170.4 18.0 185 298-542 2-200 (201)
56 PRK09522 bifunctional glutamin 99.8 1.7E-18 3.6E-23 193.4 18.4 187 296-546 2-192 (531)
57 cd01747 GATase1_Glutamyl_Hydro 99.8 1.6E-18 3.4E-23 179.0 16.5 177 310-532 19-220 (273)
58 PRK13181 hisH imidazole glycer 99.8 2.3E-18 5.1E-23 169.3 16.9 184 298-542 2-198 (199)
59 cd01748 GATase1_IGP_Synthase T 99.8 1.4E-18 3.1E-23 170.4 15.2 186 298-541 1-198 (198)
60 PLN02832 glutamine amidotransf 99.8 2.7E-18 5.8E-23 174.5 16.6 201 296-546 2-216 (248)
61 cd01741 GATase1_1 Subgroup of 99.8 5.9E-18 1.3E-22 164.2 16.6 139 357-541 43-188 (188)
62 PRK13527 glutamine amidotransf 99.8 9.9E-18 2.1E-22 165.1 18.2 191 296-546 1-199 (200)
63 COG0518 GuaA GMP synthase - Gl 99.8 6.4E-18 1.4E-22 166.9 14.5 182 297-543 3-192 (198)
64 PRK06490 glutamine amidotransf 99.8 3.6E-17 7.8E-22 165.9 19.9 181 294-542 6-191 (239)
65 PRK13525 glutamine amidotransf 99.8 2.1E-17 4.5E-22 161.9 17.5 179 296-545 2-188 (189)
66 PRK09065 glutamine amidotransf 99.8 7.9E-18 1.7E-22 170.4 13.9 141 357-543 51-199 (237)
67 PRK07053 glutamine amidotransf 99.8 2.4E-17 5.1E-22 166.7 17.4 178 297-542 4-190 (234)
68 PRK05665 amidotransferase; Pro 99.8 4.2E-17 9.1E-22 165.5 19.1 133 357-529 54-191 (240)
69 TIGR01855 IMP_synth_hisH imida 99.7 2.6E-17 5.6E-22 161.8 16.1 185 298-543 1-196 (196)
70 PLN02617 imidazole glycerol ph 99.7 5.4E-17 1.2E-21 181.1 20.3 200 294-549 5-215 (538)
71 PRK07567 glutamine amidotransf 99.7 3.9E-17 8.4E-22 165.9 16.5 132 357-529 48-195 (242)
72 TIGR01737 FGAM_synth_I phospho 99.7 2.2E-16 4.8E-21 158.8 17.6 192 296-542 1-225 (227)
73 TIGR03800 PLP_synth_Pdx2 pyrid 99.7 2E-16 4.4E-21 154.4 15.4 175 297-541 1-183 (184)
74 KOG1224 Para-aminobenzoate (PA 99.7 3E-16 6.6E-21 169.2 16.6 196 294-546 13-219 (767)
75 KOG0026 Anthranilate synthase, 99.7 5.9E-16 1.3E-20 146.4 13.7 197 297-550 20-220 (223)
76 PRK08250 glutamine amidotransf 99.7 3.4E-15 7.5E-20 151.0 18.2 139 357-543 42-193 (235)
77 cd01749 GATase1_PB Glutamine A 99.6 1.3E-14 2.8E-19 141.2 13.0 167 309-541 8-183 (183)
78 KOG0623 Glutamine amidotransfe 99.6 1.8E-14 4E-19 149.0 11.9 190 298-542 4-206 (541)
79 PRK13526 glutamine amidotransf 99.4 1.5E-12 3.3E-17 126.6 13.6 80 296-404 3-87 (179)
80 PRK01077 cobyrinic acid a,c-di 99.4 2.4E-11 5.1E-16 134.0 23.1 89 295-406 245-339 (451)
81 PRK01175 phosphoribosylformylg 99.4 1.4E-11 3.1E-16 126.7 18.4 212 295-544 3-257 (261)
82 KOG1622 GMP synthase [Nucleoti 99.4 9.8E-13 2.1E-17 140.5 7.9 154 359-553 58-213 (552)
83 PRK05368 homoserine O-succinyl 99.3 3.6E-11 7.7E-16 125.9 17.7 208 294-546 34-253 (302)
84 KOG3179 Predicted glutamine sy 99.3 8E-12 1.7E-16 122.1 11.3 135 356-529 55-197 (245)
85 COG0047 PurL Phosphoribosylfor 99.3 2.5E-10 5.5E-15 113.9 20.8 196 295-543 2-229 (231)
86 COG0311 PDX2 Predicted glutami 99.3 3.8E-11 8.3E-16 116.1 13.4 82 296-405 1-88 (194)
87 TIGR00379 cobB cobyrinic acid 99.3 5.9E-10 1.3E-14 122.9 24.2 89 295-406 244-338 (449)
88 cd01740 GATase1_FGAR_AT Type 1 99.3 9.7E-11 2.1E-15 118.9 16.6 178 310-530 11-218 (238)
89 PF01174 SNO: SNO glutamine am 99.2 2.9E-10 6.3E-15 110.9 14.2 161 306-545 3-187 (188)
90 TIGR00313 cobQ cobyric acid sy 99.2 1.8E-09 3.9E-14 119.9 20.1 305 4-405 1-335 (475)
91 PRK00784 cobyric acid synthase 99.1 2.2E-09 4.7E-14 119.6 19.5 86 294-406 250-342 (488)
92 KOG1559 Gamma-glutamyl hydrola 99.1 9.7E-11 2.1E-15 117.2 6.4 179 313-530 81-274 (340)
93 PRK13896 cobyrinic acid a,c-di 99.0 4.5E-08 9.8E-13 107.5 21.0 291 1-405 1-324 (433)
94 PF13507 GATase_5: CobB/CobQ-l 98.8 7.7E-08 1.7E-12 99.1 14.5 196 296-531 2-233 (259)
95 TIGR01857 FGAM-synthase phosph 98.7 6.4E-07 1.4E-11 108.4 21.2 220 294-542 976-1237(1239)
96 PRK05297 phosphoribosylformylg 98.7 5.8E-07 1.3E-11 110.1 20.4 197 294-531 1034-1263(1290)
97 PLN03206 phosphoribosylformylg 98.6 1.9E-06 4E-11 105.2 20.3 203 294-531 1036-1276(1307)
98 KOG3210 Imidazoleglycerol-phos 98.6 7.1E-07 1.5E-11 85.5 13.0 88 297-406 13-108 (226)
99 cd01750 GATase1_CobQ Type 1 gl 98.6 1.1E-07 2.3E-12 93.8 7.3 83 298-406 1-89 (194)
100 TIGR01735 FGAM_synt phosphorib 98.5 2.4E-06 5.2E-11 104.7 16.3 195 294-530 1054-1283(1310)
101 PRK06278 cobyrinic acid a,c-di 98.5 3.4E-07 7.4E-12 101.8 7.9 78 296-405 1-81 (476)
102 cd03130 GATase1_CobB Type 1 gl 98.4 6E-07 1.3E-11 88.8 7.7 75 310-406 12-92 (198)
103 COG1797 CobB Cobyrinic acid a, 98.2 0.00045 9.7E-09 75.6 24.3 195 296-544 246-450 (451)
104 PHA03366 FGAM-synthase; Provis 98.0 0.00022 4.7E-09 88.0 18.4 91 292-403 1025-1131(1304)
105 TIGR01739 tegu_FGAM_synt herpe 97.9 0.00034 7.3E-09 85.9 18.4 90 293-403 927-1032(1202)
106 cd01653 GATase1 Type 1 glutami 97.9 5.7E-05 1.2E-09 63.2 8.3 76 310-402 13-92 (115)
107 PF04204 HTS: Homoserine O-suc 97.9 0.00015 3.3E-09 76.1 12.9 208 294-548 33-254 (298)
108 cd03146 GAT1_Peptidase_E Type 97.8 3.3E-05 7.1E-10 77.2 6.4 92 294-403 30-128 (212)
109 cd03144 GATase1_ScBLP_like Typ 97.7 4.7E-05 1E-09 69.5 4.8 84 298-402 2-90 (114)
110 cd03131 GATase1_HTS Type 1 glu 97.6 0.00021 4.6E-09 69.9 8.6 52 358-409 60-118 (175)
111 PF07685 GATase_3: CobB/CobQ-l 97.6 5.8E-05 1.2E-09 72.1 4.6 51 356-406 3-59 (158)
112 cd03128 GAT_1 Type 1 glutamine 97.5 0.00028 6.2E-09 56.3 6.5 75 311-402 14-92 (92)
113 TIGR01001 metA homoserine O-su 97.5 0.0016 3.5E-08 68.3 13.6 206 294-545 34-251 (300)
114 PF00988 CPSase_sm_chain: Carb 97.3 3.7E-05 8E-10 71.6 -1.7 76 178-262 50-127 (131)
115 TIGR01382 PfpI intracellular p 96.7 0.0074 1.6E-07 57.1 8.7 46 359-404 59-107 (166)
116 cd03133 GATase1_ES1 Type 1 glu 96.6 0.004 8.6E-08 62.8 6.0 56 358-413 80-151 (213)
117 PRK11780 isoprenoid biosynthes 96.5 0.0042 9E-08 62.7 6.0 49 358-406 83-145 (217)
118 PRK05282 (alpha)-aspartyl dipe 96.5 0.0075 1.6E-07 61.6 7.7 105 277-404 15-128 (233)
119 PF09825 BPL_N: Biotin-protein 96.4 0.26 5.5E-06 53.8 19.3 92 296-403 1-96 (367)
120 cd03134 GATase1_PfpI_like A ty 96.3 0.014 3E-07 55.2 7.9 45 359-403 61-108 (165)
121 cd03169 GATase1_PfpI_1 Type 1 96.1 0.0081 1.8E-07 58.0 5.1 46 359-404 75-123 (180)
122 COG0693 ThiJ Putative intracel 96.0 0.021 4.5E-07 55.4 7.5 103 296-403 3-113 (188)
123 COG1492 CobQ Cobyric acid synt 95.9 0.0086 1.9E-07 66.7 4.7 54 1-67 1-54 (486)
124 cd03132 GATase1_catalase Type 95.8 0.04 8.7E-07 51.0 8.3 102 296-404 2-110 (142)
125 cd02037 MRP-like MRP (Multiple 95.7 0.053 1.1E-06 51.7 8.9 128 7-219 4-131 (169)
126 KOG1907 Phosphoribosylformylgl 95.4 0.26 5.7E-06 58.2 14.3 91 294-404 1057-1162(1320)
127 cd03147 GATase1_Ydr533c_like T 95.4 0.023 5E-07 57.9 5.4 48 358-405 92-143 (231)
128 PRK00090 bioD dithiobiotin syn 95.0 0.059 1.3E-06 53.6 7.0 166 4-220 2-173 (222)
129 PRK11574 oxidative-stress-resi 94.8 0.17 3.6E-06 49.5 9.3 100 296-403 3-113 (196)
130 PRK13768 GTPase; Provisional 94.8 0.18 4E-06 51.8 10.0 39 2-42 3-41 (253)
131 PRK12374 putative dithiobiotin 94.6 0.18 3.9E-06 50.9 9.4 169 1-221 2-176 (231)
132 PRK04155 chaperone protein Hch 94.5 0.054 1.2E-06 57.1 5.3 46 358-403 145-194 (287)
133 cd01983 Fer4_NifH The Fer4_Nif 94.4 0.11 2.3E-06 43.2 6.0 33 4-38 2-34 (99)
134 PF01965 DJ-1_PfpI: DJ-1/PfpI 94.3 0.03 6.5E-07 52.4 2.7 47 358-404 35-86 (147)
135 cd03129 GAT1_Peptidase_E_like 94.3 0.28 6E-06 48.8 9.7 106 281-404 17-129 (210)
136 PRK09435 membrane ATPase/prote 94.0 0.31 6.6E-06 52.5 10.0 63 3-67 58-128 (332)
137 cd03137 GATase1_AraC_1 AraC tr 93.6 0.14 3.1E-06 49.3 6.1 48 357-404 61-111 (187)
138 cd03148 GATase1_EcHsp31_like T 93.5 0.11 2.4E-06 52.9 5.4 46 358-403 94-143 (232)
139 COG3442 Predicted glutamine am 93.4 0.049 1.1E-06 55.1 2.3 154 359-547 51-218 (250)
140 cd03141 GATase1_Hsp31_like Typ 93.3 0.12 2.5E-06 52.1 4.9 47 358-404 88-138 (221)
141 cd03140 GATase1_PfpI_3 Type 1 93.1 0.15 3.3E-06 48.8 5.3 46 359-404 59-106 (170)
142 cd03138 GATase1_AraC_2 AraC tr 92.8 0.2 4.2E-06 48.8 5.7 47 358-404 67-119 (195)
143 cd03135 GATase1_DJ-1 Type 1 gl 92.7 0.17 3.6E-06 47.4 4.8 46 359-404 59-108 (163)
144 PRK05632 phosphate acetyltrans 92.6 0.83 1.8E-05 53.7 11.4 37 1-38 2-38 (684)
145 TIGR01968 minD_bact septum sit 92.4 2.6 5.6E-05 42.3 13.3 40 2-42 2-41 (261)
146 TIGR00750 lao LAO/AO transport 92.3 0.84 1.8E-05 48.1 9.9 46 1-48 34-79 (300)
147 PRK14974 cell division protein 92.2 2.3 5E-05 45.9 13.2 39 2-42 141-179 (336)
148 cd00550 ArsA_ATPase Oxyanion-t 92.2 0.54 1.2E-05 48.3 8.1 39 2-42 1-39 (254)
149 TIGR01383 not_thiJ DJ-1 family 91.4 0.3 6.5E-06 46.7 5.0 47 358-404 61-111 (179)
150 PRK11249 katE hydroperoxidase 91.1 0.73 1.6E-05 54.5 8.6 104 293-404 595-706 (752)
151 cd03139 GATase1_PfpI_2 Type 1 91.0 0.31 6.6E-06 46.7 4.6 46 358-403 60-108 (183)
152 TIGR03371 cellulose_yhjQ cellu 90.9 1.3 2.7E-05 44.4 9.2 41 1-42 1-41 (246)
153 PRK10867 signal recognition pa 90.8 3.6 7.9E-05 45.9 13.4 39 2-42 101-140 (433)
154 TIGR00064 ftsY signal recognit 90.8 5 0.00011 41.9 13.7 39 2-42 73-111 (272)
155 PHA02518 ParA-like protein; Pr 90.4 1.1 2.3E-05 43.6 7.9 33 11-43 9-41 (211)
156 cd03136 GATase1_AraC_ArgR_like 90.3 0.56 1.2E-05 45.2 5.8 46 358-403 62-109 (185)
157 PF13278 DUF4066: Putative ami 90.2 0.37 8.1E-06 45.6 4.4 48 357-404 58-108 (166)
158 cd03114 ArgK-like The function 89.5 2.1 4.6E-05 40.5 8.9 38 4-43 2-39 (148)
159 TIGR01969 minD_arch cell divis 88.8 1.6 3.5E-05 43.5 8.1 34 9-42 7-40 (251)
160 PRK13849 putative crown gall t 86.9 7.8 0.00017 39.4 11.7 44 1-45 1-44 (231)
161 PRK11889 flhF flagellar biosyn 86.8 8 0.00017 43.1 12.3 143 2-216 242-384 (436)
162 PRK10818 cell division inhibit 86.6 8.5 0.00018 39.3 11.8 40 2-42 3-42 (270)
163 cd02042 ParA ParA and ParB of 86.4 2.8 6E-05 36.3 7.1 37 6-42 3-39 (104)
164 TIGR02069 cyanophycinase cyano 86.2 3.1 6.8E-05 43.0 8.4 108 281-403 16-130 (250)
165 PRK09393 ftrA transcriptional 86.1 1.3 2.9E-05 46.6 5.8 48 357-404 72-121 (322)
166 TIGR00959 ffh signal recogniti 86.0 5.9 0.00013 44.2 11.0 141 3-217 101-247 (428)
167 cd02035 ArsA ArsA ATPase funct 85.0 6 0.00013 39.5 9.6 39 4-44 2-40 (217)
168 TIGR00347 bioD dethiobiotin sy 84.9 4.4 9.5E-05 38.2 8.2 153 10-216 5-165 (166)
169 PRK14494 putative molybdopteri 84.8 1.7 3.7E-05 44.5 5.7 37 1-39 1-37 (229)
170 cd03115 SRP The signal recogni 84.6 12 0.00025 35.6 11.0 37 4-42 3-39 (173)
171 PRK14493 putative bifunctional 84.3 2.2 4.8E-05 44.7 6.3 45 1-49 1-47 (274)
172 COG1897 MetA Homoserine trans- 83.6 11 0.00024 39.3 10.8 197 294-530 34-242 (307)
173 TIGR03499 FlhF flagellar biosy 83.4 1.8 3.9E-05 45.3 5.3 40 2-43 195-236 (282)
174 PF13500 AAA_26: AAA domain; P 82.0 2.1 4.5E-05 41.8 4.8 163 3-218 2-167 (199)
175 CHL00072 chlL photochlorophyll 81.7 2.6 5.7E-05 44.2 5.7 43 1-46 1-43 (290)
176 PRK13232 nifH nitrogenase redu 81.6 2.3 5E-05 43.7 5.2 43 1-45 1-43 (273)
177 cd02029 PRK_like Phosphoribulo 80.9 2.5 5.4E-05 44.5 5.1 44 4-49 2-45 (277)
178 cd03145 GAT1_cyanophycinase Ty 80.2 6.2 0.00013 39.7 7.6 108 281-403 17-131 (217)
179 PRK13230 nitrogenase reductase 79.8 3.4 7.4E-05 42.7 5.7 45 1-47 1-45 (279)
180 cd02040 NifH NifH gene encodes 79.7 3.4 7.3E-05 42.0 5.6 44 1-46 1-44 (270)
181 COG0132 BioD Dethiobiotin synt 79.2 3.5 7.6E-05 42.1 5.4 184 1-231 2-187 (223)
182 COG0003 ArsA Predicted ATPase 79.2 3.4 7.3E-05 44.5 5.6 49 1-51 2-50 (322)
183 PF02374 ArsA_ATPase: Anion-tr 78.7 2.9 6.2E-05 44.4 4.9 42 1-44 1-42 (305)
184 cd03116 MobB Molybdenum is an 78.3 4.6 9.9E-05 38.9 5.7 40 1-42 1-40 (159)
185 PLN02929 NADH kinase 76.9 3.1 6.8E-05 44.3 4.5 64 308-398 33-96 (301)
186 PRK01911 ppnK inorganic polyph 76.9 4.9 0.00011 42.6 6.0 95 296-399 1-98 (292)
187 TIGR00176 mobB molybdopterin-g 76.8 4.3 9.4E-05 38.7 5.1 35 4-40 2-36 (155)
188 cd02034 CooC The accessory pro 76.6 5 0.00011 36.5 5.2 36 4-41 2-37 (116)
189 COG2894 MinD Septum formation 76.5 3.8 8.2E-05 42.2 4.7 38 2-40 3-40 (272)
190 KOG2764 Putative transcription 76.3 4.2 9.1E-05 41.8 5.0 44 359-402 66-113 (247)
191 cd03109 DTBS Dethiobiotin synt 75.7 7 0.00015 36.2 6.0 37 3-42 2-38 (134)
192 PF01656 CbiA: CobQ/CobB/MinD/ 75.3 4.4 9.6E-05 38.5 4.7 36 10-45 6-41 (195)
193 PRK04539 ppnK inorganic polyph 75.2 8.3 0.00018 41.0 7.1 93 297-399 7-102 (296)
194 TIGR03815 CpaE_hom_Actino heli 74.6 29 0.00062 36.7 11.1 42 2-44 94-135 (322)
195 cd02038 FleN-like FleN is a me 73.7 39 0.00084 31.2 10.5 38 4-42 2-39 (139)
196 cd02033 BchX Chlorophyllide re 72.6 6.7 0.00014 42.3 5.7 41 2-44 32-72 (329)
197 TIGR01007 eps_fam capsular exo 72.3 7.3 0.00016 38.1 5.6 43 1-44 17-59 (204)
198 cd02028 UMPK_like Uridine mono 72.3 7.2 0.00016 37.9 5.4 41 4-46 2-42 (179)
199 PRK03372 ppnK inorganic polyph 71.9 7.9 0.00017 41.3 6.1 94 297-399 7-106 (306)
200 PRK07667 uridine kinase; Provi 71.5 8 0.00017 37.9 5.6 40 3-44 19-58 (193)
201 TIGR01425 SRP54_euk signal rec 71.4 6.2 0.00013 44.1 5.3 40 2-43 101-140 (429)
202 PRK12724 flagellar biosynthesi 71.3 6.2 0.00013 44.1 5.2 41 2-44 224-265 (432)
203 PF03575 Peptidase_S51: Peptid 71.1 3.1 6.6E-05 39.4 2.5 73 313-401 4-81 (154)
204 PRK13233 nifH nitrogenase redu 70.9 7.3 0.00016 40.0 5.4 43 1-45 2-45 (275)
205 CHL00175 minD septum-site dete 70.6 8.4 0.00018 39.7 5.8 45 2-47 16-61 (281)
206 cd06300 PBP1_ABC_sugar_binding 70.0 24 0.00053 35.1 8.9 85 297-395 1-91 (272)
207 PRK13235 nifH nitrogenase redu 69.8 8.1 0.00018 39.8 5.5 43 1-45 1-43 (274)
208 PF06564 YhjQ: YhjQ protein; 69.7 8 0.00017 40.0 5.3 46 1-47 1-52 (243)
209 PF06283 ThuA: Trehalose utili 69.2 10 0.00022 37.7 5.9 43 356-398 48-90 (217)
210 PRK10037 cell division protein 68.9 7.6 0.00017 39.4 5.0 42 1-43 1-42 (250)
211 TIGR03018 pepcterm_TyrKin exop 68.6 11 0.00023 37.3 5.9 42 1-43 35-77 (207)
212 cd01830 XynE_like SGNH_hydrola 68.6 15 0.00032 35.9 6.7 87 92-186 21-131 (204)
213 PRK04885 ppnK inorganic polyph 68.1 10 0.00022 39.6 5.8 35 360-399 35-71 (265)
214 PRK13234 nifH nitrogenase redu 68.0 9.9 0.00021 40.0 5.7 43 1-45 4-46 (295)
215 PRK10416 signal recognition pa 67.9 9.4 0.0002 40.9 5.6 39 2-42 115-153 (318)
216 cd01672 TMPK Thymidine monopho 67.8 9.1 0.0002 36.4 5.0 36 2-39 1-36 (200)
217 PRK02155 ppnK NAD(+)/NADH kina 67.6 13 0.00027 39.4 6.4 89 297-399 7-97 (291)
218 PRK10751 molybdopterin-guanine 67.4 12 0.00025 36.9 5.6 38 2-41 7-44 (173)
219 PRK06731 flhF flagellar biosyn 67.4 83 0.0018 33.0 12.3 140 3-216 77-218 (270)
220 COG4285 Uncharacterized conser 67.2 19 0.00041 36.9 7.1 70 314-399 19-92 (253)
221 PRK13236 nitrogenase reductase 67.0 9.8 0.00021 40.0 5.5 42 2-45 7-48 (296)
222 PRK02649 ppnK inorganic polyph 66.6 12 0.00027 39.9 6.1 37 358-399 66-102 (305)
223 PRK03378 ppnK inorganic polyph 66.4 15 0.00032 39.0 6.6 88 297-399 7-97 (292)
224 PRK13185 chlL protochlorophyll 66.4 12 0.00025 38.3 5.8 42 2-45 3-44 (270)
225 PRK14077 pnk inorganic polypho 66.2 14 0.0003 39.1 6.4 85 296-399 11-98 (287)
226 PRK12726 flagellar biosynthesi 65.3 11 0.00024 41.8 5.5 39 2-42 207-245 (407)
227 COG0540 PyrB Aspartate carbamo 64.8 29 0.00064 37.2 8.4 104 192-327 86-189 (316)
228 cd02036 MinD Bacterial cell di 64.8 9.7 0.00021 35.7 4.5 34 9-42 6-39 (179)
229 PLN02727 NAD kinase 64.4 11 0.00024 45.7 5.7 92 296-399 679-777 (986)
230 PRK03708 ppnK inorganic polyph 64.0 12 0.00026 39.3 5.4 87 296-399 1-90 (277)
231 cd02032 Bchl_like This family 63.3 18 0.00039 37.0 6.4 42 1-45 1-42 (267)
232 PF10087 DUF2325: Uncharacteri 63.3 30 0.00065 30.2 7.0 79 297-394 1-80 (97)
233 KOG2825 Putative arsenite-tran 62.4 8.4 0.00018 40.4 3.7 43 2-46 20-62 (323)
234 PRK05703 flhF flagellar biosyn 61.3 12 0.00027 41.6 5.1 39 2-42 222-262 (424)
235 cd02117 NifH_like This family 60.2 16 0.00035 36.1 5.3 42 3-46 2-43 (212)
236 PRK06696 uridine kinase; Valid 60.1 19 0.00041 36.0 5.8 41 3-45 24-64 (223)
237 PRK13231 nitrogenase reductase 60.0 9.1 0.0002 39.0 3.6 42 1-45 2-43 (264)
238 cd03110 Fer4_NifH_child This p 59.6 68 0.0015 30.4 9.4 29 11-43 8-36 (179)
239 PRK13869 plasmid-partitioning 59.4 14 0.0003 40.9 5.1 44 2-46 122-165 (405)
240 PRK11670 antiporter inner memb 58.8 17 0.00036 39.8 5.5 43 2-45 108-150 (369)
241 PF00142 Fer4_NifH: 4Fe-4S iro 56.7 13 0.00029 39.0 4.2 32 12-43 9-40 (273)
242 KOG3974 Predicted sugar kinase 56.6 32 0.00068 36.3 6.7 95 297-393 32-136 (306)
243 PRK01184 hypothetical protein; 56.5 13 0.00029 35.6 3.9 29 1-35 1-29 (184)
244 PRK14075 pnk inorganic polypho 56.4 24 0.00052 36.6 6.0 72 296-399 1-72 (256)
245 PRK14076 pnk inorganic polypho 55.4 31 0.00066 39.9 7.2 104 282-399 275-382 (569)
246 PF02572 CobA_CobO_BtuR: ATP:c 55.3 11 0.00023 37.1 3.0 29 11-39 9-39 (172)
247 PF02424 ApbE: ApbE family; I 55.2 9.9 0.00022 39.2 2.9 90 11-112 110-213 (254)
248 COG3340 PepE Peptidase E [Amin 55.1 26 0.00057 35.8 5.7 91 295-402 32-131 (224)
249 PRK00771 signal recognition pa 54.9 20 0.00043 40.2 5.4 39 2-42 96-134 (437)
250 TIGR02016 BchX chlorophyllide 54.7 21 0.00045 37.7 5.3 40 3-44 2-41 (296)
251 PLN02935 Bifunctional NADH kin 54.2 24 0.00053 40.2 5.9 36 359-399 261-296 (508)
252 PRK14489 putative bifunctional 54.1 22 0.00048 38.6 5.5 39 1-41 205-243 (366)
253 TIGR01287 nifH nitrogenase iro 54.0 22 0.00049 36.4 5.3 41 3-45 2-42 (275)
254 PRK14495 putative molybdopteri 53.2 21 0.00045 40.2 5.1 39 1-41 1-39 (452)
255 COG1192 Soj ATPases involved i 52.7 22 0.00047 36.1 4.9 36 9-44 9-45 (259)
256 COG3155 ElbB Uncharacterized p 51.4 23 0.0005 34.7 4.5 51 358-408 83-147 (217)
257 COG0521 MoaB Molybdopterin bio 50.7 79 0.0017 31.2 8.1 74 89-173 27-115 (169)
258 PRK15453 phosphoribulokinase; 50.2 21 0.00046 37.9 4.4 48 2-51 6-53 (290)
259 cd06312 PBP1_ABC_sugar_binding 50.2 69 0.0015 31.9 8.1 85 297-396 1-89 (271)
260 PF00485 PRK: Phosphoribulokin 49.7 20 0.00043 35.0 3.9 38 4-43 2-43 (194)
261 PF01513 NAD_kinase: ATP-NAD k 49.7 12 0.00027 39.1 2.6 38 357-399 73-110 (285)
262 KOG4180 Predicted kinase [Gene 49.6 15 0.00033 39.6 3.2 62 308-395 74-135 (395)
263 PRK07414 cob(I)yrinic acid a,c 49.5 15 0.00033 36.3 3.0 28 12-39 28-57 (178)
264 TIGR01281 DPOR_bchL light-inde 49.2 34 0.00073 34.9 5.7 35 11-45 8-42 (268)
265 COG1703 ArgK Putative periplas 49.1 21 0.00045 38.3 4.1 139 5-217 55-197 (323)
266 PRK13886 conjugal transfer pro 48.6 31 0.00066 35.8 5.2 42 1-42 1-42 (241)
267 PRK06953 short chain dehydroge 48.0 24 0.00051 34.5 4.2 34 1-40 1-34 (222)
268 COG4090 Uncharacterized protei 47.9 23 0.00049 33.6 3.7 41 357-397 82-124 (154)
269 cd06320 PBP1_allose_binding Pe 47.8 81 0.0018 31.4 8.1 33 359-395 56-88 (275)
270 PRK00561 ppnK inorganic polyph 47.8 15 0.00033 38.3 2.9 36 359-399 32-67 (259)
271 PF01583 APS_kinase: Adenylyls 47.7 29 0.00063 33.5 4.6 36 3-40 4-39 (156)
272 PRK00779 ornithine carbamoyltr 47.6 2.2E+02 0.0049 30.3 11.7 130 196-368 87-225 (304)
273 PF13614 AAA_31: AAA domain; P 47.0 42 0.00092 30.8 5.5 40 2-42 1-40 (157)
274 PF03205 MobB: Molybdopterin g 46.7 34 0.00074 32.1 4.9 37 2-40 1-37 (140)
275 PRK04761 ppnK inorganic polyph 46.5 16 0.00035 37.8 2.9 37 358-399 23-59 (246)
276 PRK08267 short chain dehydroge 46.2 23 0.00051 35.3 4.0 31 1-37 1-31 (260)
277 PRK01231 ppnK inorganic polyph 46.1 48 0.001 35.2 6.4 89 297-399 6-96 (295)
278 cd01391 Periplasmic_Binding_Pr 45.5 65 0.0014 30.6 6.8 32 359-395 57-88 (269)
279 PRK05693 short chain dehydroge 45.5 23 0.0005 35.8 3.8 32 1-38 1-32 (274)
280 cd06299 PBP1_LacI_like_13 Liga 45.3 80 0.0017 31.1 7.6 29 359-393 54-82 (265)
281 cd01836 FeeA_FeeB_like SGNH_hy 45.1 44 0.00096 31.8 5.5 59 119-184 54-116 (191)
282 PRK07102 short chain dehydroge 44.6 24 0.00051 34.9 3.7 35 1-41 1-35 (243)
283 PRK00856 pyrB aspartate carbam 44.2 2.8E+02 0.006 29.7 11.8 161 157-368 61-221 (305)
284 PRK03501 ppnK inorganic polyph 44.2 48 0.001 34.7 5.9 35 359-398 38-74 (264)
285 PRK06179 short chain dehydroge 44.2 26 0.00056 35.2 3.9 34 2-41 5-38 (270)
286 COG4126 Hydantoin racemase [Am 44.1 29 0.00063 35.6 4.1 46 358-410 67-112 (230)
287 cd06267 PBP1_LacI_sugar_bindin 43.9 89 0.0019 30.2 7.6 31 359-395 54-84 (264)
288 PRK01713 ornithine carbamoyltr 43.9 2.5E+02 0.0055 30.4 11.5 101 192-327 86-186 (334)
289 PRK08727 hypothetical protein; 43.8 17 0.00036 36.9 2.4 59 3-63 43-101 (233)
290 PF13472 Lipase_GDSL_2: GDSL-l 43.6 29 0.00063 31.4 3.8 92 86-188 11-115 (179)
291 TIGR00041 DTMP_kinase thymidyl 43.4 43 0.00094 32.1 5.2 34 2-37 4-37 (195)
292 PRK09221 beta alanine--pyruvat 42.7 83 0.0018 35.1 7.9 37 139-178 218-256 (445)
293 PF00448 SRP54: SRP54-type pro 42.6 49 0.0011 32.8 5.5 40 2-43 2-41 (196)
294 PRK09271 flavodoxin; Provision 42.1 1.2E+02 0.0026 28.7 8.0 55 296-368 1-59 (160)
295 TIGR01133 murG undecaprenyldip 42.1 37 0.00081 35.2 4.8 34 1-38 1-35 (348)
296 PRK14528 adenylate kinase; Pro 41.4 35 0.00075 33.2 4.2 25 1-27 1-25 (186)
297 COG0529 CysC Adenylylsulfate k 41.2 42 0.00092 33.6 4.6 32 3-36 25-56 (197)
298 PHA02519 plasmid partition pro 40.8 28 0.00061 38.3 3.8 34 13-46 117-151 (387)
299 cd06305 PBP1_methylthioribose_ 40.8 1.1E+02 0.0025 30.1 7.9 33 359-395 54-86 (273)
300 cd06321 PBP1_ABC_sugar_binding 40.5 1.3E+02 0.0028 29.9 8.2 33 359-395 56-88 (271)
301 PRK08177 short chain dehydroge 40.3 42 0.00092 32.8 4.7 35 1-41 1-35 (225)
302 PRK03846 adenylylsulfate kinas 40.3 44 0.00096 32.6 4.8 40 2-43 25-64 (198)
303 TIGR03029 EpsG chain length de 40.3 46 0.00099 34.1 5.1 40 2-42 104-143 (274)
304 cd05014 SIS_Kpsf KpsF-like pro 40.2 1.2E+02 0.0027 26.9 7.3 39 358-398 45-83 (128)
305 PRK06940 short chain dehydroge 40.1 40 0.00086 34.5 4.6 31 2-40 3-33 (275)
306 COG1348 NifH Nitrogenase subun 39.6 27 0.00058 36.4 3.1 29 13-41 11-39 (278)
307 PRK07890 short chain dehydroge 39.5 36 0.00077 33.8 4.0 33 2-40 6-38 (258)
308 PRK06924 short chain dehydroge 39.5 45 0.00097 33.0 4.7 31 1-37 1-31 (251)
309 PRK12723 flagellar biosynthesi 39.3 48 0.001 36.7 5.3 39 2-42 175-217 (388)
310 COG1763 MobB Molybdopterin-gua 39.2 79 0.0017 30.7 6.2 55 1-57 2-57 (161)
311 cd06309 PBP1_YtfQ_like Peripla 39.1 1.2E+02 0.0026 30.2 7.8 33 359-395 54-86 (273)
312 PRK02006 murD UDP-N-acetylmura 39.0 47 0.001 37.4 5.3 31 2-36 122-152 (498)
313 PRK06101 short chain dehydroge 39.0 34 0.00073 33.9 3.8 33 1-39 1-33 (240)
314 PRK04148 hypothetical protein; 39.0 33 0.00071 32.4 3.4 91 13-151 24-114 (134)
315 PRK06851 hypothetical protein; 39.0 51 0.0011 36.2 5.4 38 2-41 31-70 (367)
316 COG0061 nadF NAD kinase [Coenz 38.9 57 0.0012 34.3 5.6 35 359-398 54-88 (281)
317 PRK11891 aspartate carbamoyltr 38.8 3.3E+02 0.0072 30.7 11.7 142 192-369 167-317 (429)
318 cd06301 PBP1_rhizopine_binding 38.7 1.4E+02 0.003 29.6 8.1 33 359-395 55-87 (272)
319 PRK10017 colanic acid biosynth 38.6 1.5E+02 0.0032 33.2 9.1 33 296-328 1-37 (426)
320 cd01575 PBP1_GntR Ligand-bindi 38.5 1.7E+02 0.0038 28.6 8.8 31 359-395 54-84 (268)
321 KOG2708 Predicted metalloprote 38.4 97 0.0021 32.3 6.8 50 359-412 69-122 (336)
322 COG0771 MurD UDP-N-acetylmuram 38.1 1.4E+02 0.003 33.8 8.7 83 295-394 7-98 (448)
323 PRK05642 DNA replication initi 38.1 23 0.00049 35.9 2.4 60 3-64 47-106 (234)
324 PRK05854 short chain dehydroge 38.0 33 0.00071 35.9 3.7 30 2-37 15-44 (313)
325 PRK07933 thymidylate kinase; V 38.0 59 0.0013 32.6 5.3 37 2-40 1-37 (213)
326 PRK06947 glucose-1-dehydrogena 37.8 39 0.00085 33.3 4.0 30 1-36 2-31 (248)
327 PRK06732 phosphopantothenate-- 37.7 48 0.001 33.6 4.7 37 1-38 1-47 (229)
328 PRK05439 pantothenate kinase; 37.1 54 0.0012 35.2 5.1 42 3-46 88-131 (311)
329 PRK02102 ornithine carbamoyltr 36.9 4.4E+02 0.0096 28.6 12.0 101 191-327 85-185 (331)
330 cd04728 ThiG Thiazole synthase 36.6 1.4E+02 0.0031 31.2 7.8 72 301-387 16-87 (248)
331 PRK13973 thymidylate kinase; P 36.6 68 0.0015 31.9 5.5 35 2-38 4-38 (213)
332 COG2109 BtuR ATP:corrinoid ade 36.4 33 0.00072 34.5 3.1 29 10-38 33-63 (198)
333 PF09140 MipZ: ATPase MipZ; I 36.2 52 0.0011 34.5 4.6 40 3-42 1-40 (261)
334 cd01536 PBP1_ABC_sugar_binding 36.2 1.9E+02 0.0042 28.0 8.6 83 297-395 1-86 (267)
335 PLN02564 6-phosphofructokinase 36.0 1.2E+02 0.0027 34.6 7.9 59 350-410 164-239 (484)
336 PRK05993 short chain dehydroge 35.8 39 0.00084 34.4 3.7 34 1-40 4-37 (277)
337 cd06282 PBP1_GntR_like_2 Ligan 35.7 1.8E+02 0.0039 28.5 8.4 33 359-396 54-86 (266)
338 PRK12742 oxidoreductase; Provi 35.7 45 0.00097 32.6 4.0 29 2-36 7-35 (237)
339 PRK06398 aldose dehydrogenase; 35.6 40 0.00087 33.9 3.7 30 2-37 7-36 (258)
340 PRK09701 D-allose transporter 35.6 1.9E+02 0.0042 29.9 8.9 86 296-395 25-113 (311)
341 PRK08303 short chain dehydroge 35.6 38 0.00083 35.5 3.7 30 2-37 9-38 (305)
342 cd02023 UMPK Uridine monophosp 35.4 59 0.0013 31.5 4.7 37 4-44 2-38 (198)
343 cd01971 Nitrogenase_VnfN_like 35.1 2.5E+02 0.0054 31.1 10.1 217 92-327 73-322 (427)
344 TIGR00455 apsK adenylylsulfate 35.0 67 0.0014 30.8 5.0 37 2-40 19-55 (184)
345 cd01538 PBP1_ABC_xylose_bindin 34.9 1.6E+02 0.0035 29.8 8.1 33 359-395 54-86 (288)
346 PF08245 Mur_ligase_M: Mur lig 34.6 1E+02 0.0022 29.4 6.2 26 13-38 4-29 (188)
347 KOG1252 Cystathionine beta-syn 34.6 24 0.00053 38.3 2.0 43 10-52 216-260 (362)
348 PRK14734 coaE dephospho-CoA ki 34.5 50 0.0011 32.7 4.1 28 1-34 1-28 (200)
349 PRK02231 ppnK inorganic polyph 34.3 37 0.0008 35.7 3.3 37 358-399 40-76 (272)
350 cd01539 PBP1_GGBP Periplasmic 34.3 1.9E+02 0.0041 29.7 8.6 33 359-395 56-88 (303)
351 COG1214 Inactive homolog of me 34.1 48 0.001 33.6 4.0 40 358-397 56-97 (220)
352 PRK00208 thiG thiazole synthas 34.1 1.7E+02 0.0036 30.7 7.8 71 301-387 17-87 (250)
353 PLN02422 dephospho-CoA kinase 34.0 50 0.0011 33.9 4.1 83 113-230 87-170 (232)
354 TIGR00073 hypB hydrogenase acc 33.9 2.1E+02 0.0047 28.0 8.5 60 4-67 25-84 (207)
355 PRK05480 uridine/cytidine kina 33.8 74 0.0016 31.2 5.2 38 2-43 7-44 (209)
356 cd03111 CpaE_like This protein 33.8 55 0.0012 28.9 3.9 34 11-44 8-42 (106)
357 PRK12481 2-deoxy-D-gluconate 3 33.6 44 0.00094 33.5 3.6 30 2-37 9-38 (251)
358 PLN02342 ornithine carbamoyltr 33.5 4.2E+02 0.0091 29.0 11.2 132 193-367 126-266 (348)
359 PRK01185 ppnK inorganic polyph 33.3 1.4E+02 0.003 31.5 7.3 32 360-399 52-83 (271)
360 KOG1015 Transcription regulato 33.1 42 0.00091 41.2 3.7 107 107-222 707-833 (1567)
361 PRK07035 short chain dehydroge 33.1 47 0.001 32.9 3.7 30 2-37 9-38 (252)
362 TIGR02667 moaB_proteo molybden 33.0 2.3E+02 0.0049 27.3 8.3 33 359-391 62-94 (163)
363 CHL00162 thiG thiamin biosynth 33.0 1.8E+02 0.0038 30.7 7.8 73 301-387 23-95 (267)
364 TIGR01012 Sa_S2_E_A ribosomal 32.8 1.6E+02 0.0036 29.6 7.4 76 297-396 63-138 (196)
365 PRK12748 3-ketoacyl-(acyl-carr 32.8 54 0.0012 32.7 4.1 32 2-38 6-38 (256)
366 COG1834 N-Dimethylarginine dim 32.6 72 0.0016 33.6 5.0 93 63-171 50-152 (267)
367 PRK09072 short chain dehydroge 32.6 49 0.0011 33.1 3.8 33 2-40 6-38 (263)
368 PRK12562 ornithine carbamoyltr 32.6 5.4E+02 0.012 28.0 11.8 103 191-327 84-186 (334)
369 COG4242 CphB Cyanophycinase an 32.3 88 0.0019 32.9 5.5 78 314-403 72-154 (293)
370 PRK03333 coaE dephospho-CoA ki 32.2 52 0.0011 36.3 4.2 28 1-34 1-28 (395)
371 TIGR03453 partition_RepA plasm 31.6 66 0.0014 35.1 4.8 37 8-44 110-146 (387)
372 PRK10653 D-ribose transporter 31.5 3E+02 0.0065 28.0 9.4 85 295-395 26-113 (295)
373 PRK12829 short chain dehydroge 31.4 57 0.0012 32.4 4.0 33 2-40 12-44 (264)
374 PRK08339 short chain dehydroge 31.4 52 0.0011 33.3 3.8 30 2-37 9-38 (263)
375 cd06310 PBP1_ABC_sugar_binding 31.2 2.5E+02 0.0054 27.8 8.6 33 359-395 56-88 (273)
376 PRK10461 thiamine biosynthesis 31.2 38 0.00083 36.8 2.9 80 11-101 183-276 (350)
377 cd02019 NK Nucleoside/nucleoti 31.2 92 0.002 25.3 4.5 32 4-39 2-33 (69)
378 PRK12828 short chain dehydroge 31.0 62 0.0014 31.3 4.1 34 2-41 8-41 (239)
379 PRK04284 ornithine carbamoyltr 30.8 6.1E+02 0.013 27.5 11.9 101 192-327 85-185 (332)
380 PRK00698 tmk thymidylate kinas 30.8 88 0.0019 30.1 5.1 34 2-37 4-37 (205)
381 COG4977 Transcriptional regula 30.6 68 0.0015 34.8 4.6 47 358-404 74-123 (328)
382 PRK08416 7-alpha-hydroxysteroi 30.6 52 0.0011 33.0 3.6 29 2-36 9-37 (260)
383 PF13670 PepSY_2: Peptidase pr 30.5 66 0.0014 27.2 3.7 44 17-71 28-72 (83)
384 PF13407 Peripla_BP_4: Peripla 30.5 1.9E+02 0.0042 28.4 7.6 83 298-395 1-86 (257)
385 smart00852 MoCF_biosynth Proba 30.4 61 0.0013 29.7 3.7 69 312-393 21-90 (135)
386 PF14359 DUF4406: Domain of un 30.4 1.6E+02 0.0034 25.9 6.1 72 309-393 16-90 (92)
387 PRK07024 short chain dehydroge 30.3 54 0.0012 32.8 3.6 34 1-40 2-35 (257)
388 cd01537 PBP1_Repressors_Sugar_ 30.3 2.1E+02 0.0046 27.4 7.8 32 359-395 54-85 (264)
389 PRK06197 short chain dehydroge 30.3 52 0.0011 34.0 3.6 30 2-37 17-46 (306)
390 PRK13705 plasmid-partitioning 30.3 53 0.0012 36.1 3.8 34 12-45 116-150 (388)
391 COG0451 WcaG Nucleoside-diphos 30.1 67 0.0015 32.6 4.4 32 4-41 3-34 (314)
392 PRK12727 flagellar biosynthesi 30.1 75 0.0016 36.8 5.0 39 2-42 351-391 (559)
393 cd06302 PBP1_LsrB_Quorum_Sensi 30.0 2.3E+02 0.0049 29.0 8.3 32 359-394 55-86 (298)
394 PRK05786 fabG 3-ketoacyl-(acyl 29.9 60 0.0013 31.7 3.8 29 2-36 6-34 (238)
395 TIGR02133 RPI_actino ribose 5- 29.8 1.7E+02 0.0038 28.1 6.7 105 296-411 1-121 (148)
396 PRK00421 murC UDP-N-acetylmura 29.8 2.2E+02 0.0047 31.7 8.6 81 296-394 8-95 (461)
397 PRK00889 adenylylsulfate kinas 29.8 1E+02 0.0022 29.3 5.2 38 2-41 5-42 (175)
398 PF10113 Fibrillarin_2: Fibril 29.7 1.8E+02 0.0039 32.8 7.5 93 64-180 119-228 (505)
399 TIGR03325 BphB_TodD cis-2,3-di 29.7 60 0.0013 32.6 3.8 30 2-37 6-35 (262)
400 PRK08703 short chain dehydroge 29.7 63 0.0014 31.8 3.9 30 2-37 7-36 (239)
401 PRK01368 murD UDP-N-acetylmura 29.7 1.5E+02 0.0032 33.3 7.3 81 291-394 2-92 (454)
402 COG3640 CooC CO dehydrogenase 29.7 63 0.0014 33.7 3.9 36 4-41 3-39 (255)
403 PRK11519 tyrosine kinase; Prov 29.6 85 0.0018 37.3 5.6 40 2-42 527-566 (719)
404 PRK05579 bifunctional phosphop 29.6 64 0.0014 35.8 4.3 38 2-39 189-236 (399)
405 PRK08017 oxidoreductase; Provi 29.5 63 0.0014 31.9 4.0 32 2-39 3-34 (256)
406 PRK05876 short chain dehydroge 29.5 62 0.0013 33.1 4.0 30 2-37 7-36 (275)
407 PRK04690 murD UDP-N-acetylmura 29.4 2.1E+02 0.0045 32.1 8.4 83 296-394 9-98 (468)
408 PLN02989 cinnamyl-alcohol dehy 29.4 84 0.0018 32.6 5.0 34 2-41 6-39 (325)
409 PF01695 IstB_IS21: IstB-like 29.4 70 0.0015 31.2 4.1 39 3-43 49-87 (178)
410 TIGR01360 aden_kin_iso1 adenyl 29.3 68 0.0015 30.3 4.0 25 1-27 3-27 (188)
411 cd06319 PBP1_ABC_sugar_binding 29.2 2.8E+02 0.0061 27.4 8.6 33 359-395 54-86 (277)
412 PF03308 ArgK: ArgK protein; 29.1 65 0.0014 33.9 4.0 54 4-79 32-85 (266)
413 PF04016 DUF364: Domain of unk 29.0 75 0.0016 30.2 4.1 62 294-369 10-71 (147)
414 PRK02645 ppnK inorganic polyph 29.0 1.4E+02 0.003 31.8 6.6 34 359-397 56-89 (305)
415 cd06318 PBP1_ABC_sugar_binding 28.9 2E+02 0.0044 28.6 7.5 31 359-393 54-84 (282)
416 PRK05866 short chain dehydroge 28.8 56 0.0012 33.9 3.6 30 2-37 41-70 (293)
417 PRK11303 DNA-binding transcrip 28.7 3.3E+02 0.0072 27.9 9.3 84 294-394 60-146 (328)
418 TIGR01499 folC folylpolyglutam 28.7 73 0.0016 34.7 4.5 33 2-38 19-51 (397)
419 PF03668 ATP_bind_2: P-loop AT 28.6 63 0.0014 34.4 3.8 28 1-34 1-28 (284)
420 PF13450 NAD_binding_8: NAD(P) 28.5 78 0.0017 25.8 3.6 38 14-54 2-39 (68)
421 cd01832 SGNH_hydrolase_like_1 28.5 1.1E+02 0.0024 28.7 5.3 46 138-185 66-116 (185)
422 PF12846 AAA_10: AAA-like doma 28.3 91 0.002 31.4 4.9 35 3-41 3-37 (304)
423 cd06316 PBP1_ABC_sugar_binding 28.3 2.5E+02 0.0055 28.3 8.2 33 359-395 55-87 (294)
424 PRK05717 oxidoreductase; Valid 28.1 64 0.0014 32.2 3.7 30 2-37 11-40 (255)
425 PRK01390 murD UDP-N-acetylmura 28.1 1.1E+02 0.0024 33.9 5.9 62 2-73 115-178 (460)
426 cd06274 PBP1_FruR Ligand bindi 28.1 2.4E+02 0.0052 27.8 7.8 31 359-395 54-84 (264)
427 PRK07831 short chain dehydroge 28.1 72 0.0016 31.9 4.1 31 2-37 18-48 (262)
428 PF03698 UPF0180: Uncharacteri 28.1 84 0.0018 27.3 3.8 35 310-368 9-43 (80)
429 COG0489 Mrp ATPases involved i 28.0 94 0.002 32.4 5.0 162 2-217 58-227 (265)
430 cd05013 SIS_RpiR RpiR-like pro 28.0 4.1E+02 0.0089 23.2 10.2 38 358-397 58-95 (139)
431 COG1660 Predicted P-loop-conta 27.9 49 0.0011 35.0 2.8 20 1-22 1-20 (286)
432 cd06273 PBP1_GntR_like_1 This 27.9 2.7E+02 0.0059 27.3 8.2 31 359-395 54-84 (268)
433 PRK10310 PTS system galactitol 27.8 1.1E+02 0.0023 26.8 4.6 38 2-42 4-42 (94)
434 PRK09620 hypothetical protein; 27.7 80 0.0017 32.2 4.4 36 2-37 4-49 (229)
435 PRK11104 hemG protoporphyrinog 27.6 3E+02 0.0065 26.7 8.2 41 357-398 43-87 (177)
436 PRK08690 enoyl-(acyl carrier p 27.6 67 0.0015 32.5 3.8 30 2-36 7-37 (261)
437 cd06322 PBP1_ABC_sugar_binding 27.5 3.3E+02 0.0072 26.8 8.7 33 359-395 54-86 (267)
438 PRK08340 glucose-1-dehydrogena 27.4 61 0.0013 32.4 3.5 29 3-37 2-30 (259)
439 PRK07814 short chain dehydroge 27.2 69 0.0015 32.2 3.8 34 2-41 11-44 (263)
440 PRK06463 fabG 3-ketoacyl-(acyl 27.2 72 0.0016 31.8 3.9 29 2-36 8-36 (255)
441 PRK07806 short chain dehydroge 27.2 77 0.0017 31.2 4.1 29 2-36 7-35 (248)
442 PRK08309 short chain dehydroge 27.2 98 0.0021 30.2 4.7 29 1-37 1-29 (177)
443 PRK04296 thymidine kinase; Pro 27.1 1.4E+02 0.003 29.2 5.8 38 2-45 3-42 (190)
444 PF04392 ABC_sub_bind: ABC tra 27.0 44 0.00095 34.7 2.4 39 357-397 181-219 (294)
445 COG2022 ThiG Uncharacterized e 26.9 2.6E+02 0.0057 29.2 7.7 72 301-387 23-94 (262)
446 PRK06505 enoyl-(acyl carrier p 26.9 74 0.0016 32.5 4.0 31 2-37 8-39 (271)
447 PRK06720 hypothetical protein; 26.8 73 0.0016 30.7 3.7 30 2-37 17-46 (169)
448 cd06283 PBP1_RegR_EndR_KdgR_li 26.8 2E+02 0.0043 28.2 6.9 31 359-395 54-84 (267)
449 COG0300 DltE Short-chain dehyd 26.7 73 0.0016 33.5 3.9 15 360-374 84-98 (265)
450 PRK06523 short chain dehydroge 26.7 83 0.0018 31.3 4.3 33 2-40 10-42 (260)
451 COG0052 RpsB Ribosomal protein 26.6 4.3E+02 0.0092 27.8 9.3 35 296-336 65-99 (252)
452 cd01451 vWA_Magnesium_chelatas 26.6 1.2E+02 0.0027 28.9 5.3 59 363-421 102-172 (178)
453 PRK08993 2-deoxy-D-gluconate 3 26.6 70 0.0015 31.9 3.7 30 2-37 11-40 (253)
454 TIGR02637 RhaS rhamnose ABC tr 26.6 2.8E+02 0.0061 28.2 8.3 34 359-396 55-88 (302)
455 cd03794 GT1_wbuB_like This fam 26.5 6.6E+02 0.014 25.1 17.9 42 2-43 1-43 (394)
456 PLN02913 dihydrofolate synthet 26.3 46 0.00099 38.0 2.5 32 2-37 76-107 (510)
457 TIGR02482 PFKA_ATP 6-phosphofr 26.3 77 0.0017 33.9 4.0 61 348-413 77-152 (301)
458 smart00864 Tubulin Tubulin/Fts 25.9 1.2E+02 0.0026 29.7 5.1 105 103-226 54-160 (192)
459 cd01541 PBP1_AraR Ligand-bindi 25.9 3.5E+02 0.0075 26.8 8.6 36 359-395 54-89 (273)
460 TIGR01500 sepiapter_red sepiap 25.8 86 0.0019 31.4 4.2 34 3-38 2-35 (256)
461 PRK12377 putative replication 25.8 62 0.0013 33.5 3.2 59 3-63 103-171 (248)
462 PRK07677 short chain dehydroge 25.4 82 0.0018 31.3 3.9 31 2-38 2-32 (252)
463 PRK09186 flagellin modificatio 25.3 83 0.0018 31.1 3.9 30 2-37 5-34 (256)
464 PRK09730 putative NAD(P)-bindi 25.2 96 0.0021 30.3 4.3 30 1-36 1-30 (247)
465 PRK06217 hypothetical protein; 25.2 72 0.0016 30.7 3.4 25 1-27 1-25 (183)
466 PRK12615 galactose-6-phosphate 25.1 2.6E+02 0.0055 27.7 7.1 104 296-411 1-120 (171)
467 PRK08192 aspartate carbamoyltr 25.0 9.1E+02 0.02 26.2 12.9 108 190-327 83-191 (338)
468 PRK07985 oxidoreductase; Provi 25.0 82 0.0018 32.6 4.0 29 2-36 50-78 (294)
469 PRK06182 short chain dehydroge 25.0 84 0.0018 31.7 4.0 33 1-39 3-35 (273)
470 COG0698 RpiB Ribose 5-phosphat 25.0 2E+02 0.0043 27.9 6.1 105 296-411 1-121 (151)
471 PTZ00451 dephospho-CoA kinase; 24.9 91 0.002 32.2 4.2 28 1-34 1-29 (244)
472 PRK07453 protochlorophyllide o 24.9 77 0.0017 33.1 3.8 30 2-37 7-36 (322)
473 PRK07063 short chain dehydroge 24.9 84 0.0018 31.3 3.9 30 2-37 8-37 (260)
474 PRK02496 adk adenylate kinase; 24.8 83 0.0018 30.1 3.7 25 1-27 1-25 (184)
475 PRK05599 hypothetical protein; 24.8 66 0.0014 32.2 3.1 29 2-37 1-29 (246)
476 TIGR03575 selen_PSTK_euk L-ser 24.7 1E+02 0.0022 33.5 4.7 39 4-44 2-41 (340)
477 PRK07478 short chain dehydroge 24.7 84 0.0018 31.2 3.8 30 2-37 7-36 (254)
478 PRK00081 coaE dephospho-CoA ki 24.7 97 0.0021 30.3 4.2 28 1-34 2-29 (194)
479 PRK07023 short chain dehydroge 24.7 1E+02 0.0022 30.4 4.4 31 1-37 1-31 (243)
480 PRK12859 3-ketoacyl-(acyl-carr 24.6 94 0.002 31.1 4.2 31 2-37 7-38 (256)
481 PLN00198 anthocyanidin reducta 24.5 1.1E+02 0.0025 31.9 5.0 35 1-41 9-43 (338)
482 PRK06761 hypothetical protein; 24.5 82 0.0018 33.4 3.8 33 2-36 4-36 (282)
483 cd05005 SIS_PHI Hexulose-6-pho 24.4 5.9E+02 0.013 24.3 9.6 88 279-397 20-110 (179)
484 PRK06943 adenosylmethionine--8 24.4 2.7E+02 0.0058 31.2 8.1 64 138-216 220-289 (453)
485 PF09152 DUF1937: Domain of un 24.3 75 0.0016 29.5 3.0 36 358-393 77-112 (116)
486 PLN02778 3,5-epimerase/4-reduc 24.3 95 0.002 32.4 4.3 27 4-36 12-38 (298)
487 PRK07062 short chain dehydroge 24.3 85 0.0018 31.4 3.8 33 2-40 9-41 (265)
488 PLN02780 ketoreductase/ oxidor 24.3 71 0.0015 33.8 3.4 32 2-39 54-85 (320)
489 cd06315 PBP1_ABC_sugar_binding 24.1 4E+02 0.0087 26.8 8.8 34 359-396 55-88 (280)
490 PF03437 BtpA: BtpA family; I 24.0 3.6E+02 0.0078 28.2 8.4 77 313-398 129-208 (254)
491 PRK09242 tropinone reductase; 24.0 84 0.0018 31.3 3.7 30 2-37 10-39 (257)
492 cd01120 RecA-like_NTPases RecA 24.0 1.4E+02 0.0031 26.7 5.0 37 4-42 2-38 (165)
493 PRK09417 mogA molybdenum cofac 23.9 1.7E+02 0.0036 29.3 5.7 69 90-168 24-108 (193)
494 cd06284 PBP1_LacI_like_6 Ligan 23.9 3.6E+02 0.0078 26.3 8.2 31 359-396 54-84 (267)
495 PRK14491 putative bifunctional 23.9 1.2E+02 0.0025 35.6 5.2 39 1-41 10-48 (597)
496 PF09822 ABC_transp_aux: ABC-t 23.8 7.9E+02 0.017 25.1 13.0 71 295-389 146-225 (271)
497 COG1856 Uncharacterized homolo 23.8 8.6E+02 0.019 25.5 10.7 131 239-388 57-217 (275)
498 cd00886 MogA_MoaB MogA_MoaB fa 23.8 2.2E+02 0.0048 26.8 6.3 71 308-391 18-92 (152)
499 COG0521 MoaB Molybdopterin bio 23.7 53 0.0012 32.3 2.1 68 312-391 30-98 (169)
500 PRK10014 DNA-binding transcrip 23.7 3.7E+02 0.0079 27.8 8.6 30 359-393 119-148 (342)
No 1
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-219 Score=1693.25 Aligned_cols=557 Identities=72% Similarity=1.180 Sum_probs=547.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||+|||||||||||||+|||+|.|||++|++||+||||||||+|||||||||||||||||||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||||||||||||++||+|||+|||||||||||||||||||+||+|+|+||||+++.+||||||||||||||||||||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|||+|||||||++++.|||||||||||||+||++|+.||+|+|||.+||+.++|+|||+||+|+++|
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCC-chhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKA 317 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~-~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~A 317 (599)
|+++|||+++|+||++|+ |+.+++.++|+|+.... .+.|.+|+.+++++++....++||+||||+.+.|+|.|+++|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 999999999999999999 99999999999975222 368999999999999999999999999999999999999999
Q ss_pred HHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007533 318 LLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 318 L~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICL 397 (599)
|+|+++++.++++|.||+|++||+++..++|.+||+||+.|+++|||+||||||+||++|||.|++|||||++|+|||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeee
Q 007533 398 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 398 GmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrH 477 (599)
|||+++||||||++|++||||+||+|++++|+|.+|||.+..|||||||||.+++.|++++|+++++||+...+.|||||
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRH 480 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRH 480 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999988999999999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhcccCC
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQGSGS 557 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~~~~~ 557 (599)
||||||+.+.+||..|+.|+|.+.+|+++|++|+++||||+|+||||||+|+|.+|+|+|.++++|+.++++.++++.+.
T Consensus 481 RyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~~l~~~l~~~~~ 560 (585)
T KOG2387|consen 481 RYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCGRLDAYLQRGCR 560 (585)
T ss_pred ceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHHhhHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
No 2
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.1e-212 Score=1664.60 Aligned_cols=527 Identities=57% Similarity=0.942 Sum_probs=509.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+||++|||||||||||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+||++||+||||||++||+|||+|||||+|||||||||||||+||+++|+ .. +||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~------~~-~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD------ST-ADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC------CC-CCEEEEEeCCceecccccHHH
Confidence 99999999999999999999999999999999999999999999999996 22 999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+|||+.++|++|++||||||||||+++|||||||||||||+|||+|||||+|+|||+++++.+.|+||||||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|++|||+||+.|+ |+++.|+++|+|+ .+.++|.+|+++++++.++.+.++||+||||.++.|||+|+++||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 999999999999999999 9999999999997 467899999999999999888899999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc-CCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICL 397 (599)
+|+|+++.++|++.||+|++++.++.+ .+. .+|||+||||||.||++|++.|++|||||++|+|||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~~-----------~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENAA-----------ELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccchh-----------hhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 999999999999999999999875532 122 29999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC-cCcCCCccccCceeeEEecCCchhhhccCCceeEEeeee
Q 007533 398 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHR 476 (599)
Q Consensus 398 GmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~-~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHr 476 (599)
|||++++||||||+|+++|||+||+|++++|||.+|||+. ...+|||||||+++|.++++ |+++++|+ ...|.||||
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~-~~~v~ERHR 458 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYG-KDEIYERHR 458 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhC-CCeeeeecc
Confidence 9999999999999999999999999999999999999964 66799999999999999999 99999997 588999999
Q ss_pred eeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcchh
Q 007533 477 HRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLD 549 (599)
Q Consensus 477 HrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~ 549 (599)
|||||||+|++++|.+|++|+|+++||.++|++|+++||||+||||||||+|+|.+|||||.+|++||.+..+
T Consensus 459 HRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 459 HRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred chhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987653
No 3
>PLN02327 CTP synthase
Probab=100.00 E-value=2.5e-208 Score=1683.68 Aligned_cols=553 Identities=84% Similarity=1.361 Sum_probs=537.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||||||||||||||||||||||+||+++|++|||++..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|||||||||||||+++|||||||||||||+|||+||+||+|+|||+++|++++|+|||+||+|++++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|+++||+||++|+ |+++.|+++|+|+.+.+.++|.+|++++++++++.++++||+||||+++.|||+||.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 999999999999999999 999999999999721245689999999999999888999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+|||+++.++|++.||+|+++++++..++|++|+.+|+.|+++|||++|||||+++.+|++.++++||++++|+||||+|
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe-cCCchhhhccCCceeEEeeeee
Q 007533 399 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 399 mQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~-~~~s~l~~iyg~~~~I~erHrH 477 (599)
||+|+++|||||+||++|||+||++++++|+|.+||+++...+|||||||.+++.+. ++ |++.++|+....|++||||
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~~VnerHrH 479 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVSFVDERHRH 479 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCccceeeeecc
Confidence 999999999999999999999999999999999999998889999999999999998 66 9999999755568999999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhcc
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQG 554 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~~ 554 (599)
||+|||++++++++.|+.++|+++||.+||++|+++||||+|||||||+.++|.+|+|||.+|++||.+++++++++
T Consensus 480 RYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~~~~~ 556 (557)
T PLN02327 480 RYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVLNS 556 (557)
T ss_pred ccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHhHHhhhcC
Confidence 99999999999989999999999999889999999999999999999999999999999999999999988876653
No 4
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=4e-197 Score=1593.68 Aligned_cols=526 Identities=56% Similarity=0.949 Sum_probs=508.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++| .+|||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999998 47899999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|+|||+++|++++|+|||+||+|++++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|++|||+||++|+ |+++.|+++|+|+ .+.++|.+|+++++++.++.++++||+||||+++.|||.|+.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLE--APEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCC--CCCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 999999999999999999 9999999999997 467789999999999999988999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+|+|+++.++|.+.||+++++++++ +++.|+++|||++|||||+++.++++.++++|+++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999987543 346799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC-cCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeee
Q 007533 399 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 399 mQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~-~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrH 477 (599)
||+|+++|||+++|+++|+|+||++++++|+|.+|+++. ..++|||||+|.|+|.+.++ |+++++|+ +..+.|||||
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg-~~~i~ErhrH 459 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYG-KEEIYERHRH 459 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhC-CCceeeeccc
Confidence 999999999999999999999999999999999999964 56899999999999999998 99999996 6678999999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
||+||+.+.+.++..||+++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++||.++.
T Consensus 460 ryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~ 530 (533)
T PRK05380 460 RYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENK 530 (533)
T ss_pred ceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 99999999999988999999999988779999999999999999999999999999999999999997643
No 5
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=3.6e-195 Score=1578.19 Aligned_cols=522 Identities=58% Similarity=0.968 Sum_probs=503.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||++||+|++||||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999995 468999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|+|||+++|++++|+|||+||+|+.++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 318 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL 318 (599)
||+++|+++||+||++|+ |+++.|+++|+|+ .+.++|.+|.++++++.++.++++||+||||+++.|+|.||++||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLN--CDEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCC--CCCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 999999999999999999 9999999999997 356689999999999999888999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 319 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 319 ~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+|+|+++.+++.+.|+++++++..+. +.|+++|||++|||||+++.++++.++++++++++|+||||+|
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~~-----------~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEGA-----------EFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhhh-----------hhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999998754221 3588999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCC-cCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeee
Q 007533 399 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 477 (599)
Q Consensus 399 mQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~-~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrH 477 (599)
||+|++++||||+||++|+|+||++++++||+.+||++. ..++|||||||+|++.+.++ |+++++|+ ...+.+||||
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG-~~~i~erhrH 459 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYG-KEEVYERHRH 459 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhC-CCceeecccc
Confidence 999999999999999999999999999999999999975 68999999999999999998 99999997 4567899999
Q ss_pred eeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 478 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 478 rYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
||+||+.+.+.++..||+++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++|
T Consensus 460 ry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~A 525 (525)
T TIGR00337 460 RYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVKA 525 (525)
T ss_pred eEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHhC
Confidence 999999999999889999999999976799999999999999999999999999999999999975
No 6
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=100.00 E-value=1.3e-140 Score=1056.15 Aligned_cols=274 Identities=65% Similarity=1.079 Sum_probs=234.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||||||||||+|||||||+|||||+|||++||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+|||+||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999996 448999999999999999999999
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCC
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~ 240 (599)
||+||||+++|++|+||||||||||++++||+||||||||||+||++|||||+|+|||+++|+++.|+|||+||+|++++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhHHH
Q 007533 241 IITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLKEW 282 (599)
Q Consensus 241 Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~~W 282 (599)
||+++|+++||+||++|+ |+++.|+++|+|+ .+.++|++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 999999999999999999 9999999999998 577899999
No 7
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=1.7e-131 Score=983.99 Aligned_cols=251 Identities=62% Similarity=1.045 Sum_probs=248.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~ 81 (599)
|||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHH
Q 007533 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (599)
Q Consensus 82 l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~e 161 (599)
|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..++||||||||||||||||+||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCe
Q 007533 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241 (599)
Q Consensus 162 a~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~V 241 (599)
|+|||++++|++|+||||||||||++++||||||||||||++||+.||+||+||||++.+++++.++|||+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCccchhHHHH
Q 007533 242 ITLYDVPNIWHIPLLLR 258 (599)
Q Consensus 242 i~~~dv~tiy~vPl~L~ 258 (599)
|..+|++++|+||++|+
T Consensus 235 I~~~d~~~iY~vPl~l~ 251 (255)
T cd03113 235 ISAPDVDNIYEVPLLLE 251 (255)
T ss_pred eecCCCcchhhccHHHH
Confidence 99999999999999987
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=1e-64 Score=506.14 Aligned_cols=228 Identities=36% Similarity=0.565 Sum_probs=212.9
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+++||+||||++++|||+||++||+|+|+++.++|++.||++++++++ ..|+++|||+||||||.||
T Consensus 1 ~v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg 67 (229)
T PRK06186 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRN 67 (229)
T ss_pred CcEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCccc
Confidence 479999999999999999999999999999999999999999998752 2589999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
++|++.+++|||++++|+||||||||+++++||||++|++||+|+||++++++|+|.+||. ....+ .|+|.+
T Consensus 68 ~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~-~~~~~-------~h~v~l 139 (229)
T PRK06186 68 DDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSC-SLVEK-------TGDIRL 139 (229)
T ss_pred HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcc-ccccC-------ceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999983 22222 378999
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
.++ |+++++|| +..+.+||||||+||+.+.+.++..||+++|+++||. ||++|+++||||+|||||||+.++|.+++
T Consensus 140 ~~~-S~l~~iyg-~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQwHPE~~s~~~~~~ 216 (229)
T PRK06186 140 RPG-SLIARAYG-TLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLFQPERAALAGRPP 216 (229)
T ss_pred CCC-CHHHHHhC-CCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeCCCCccCCCCCCC
Confidence 998 89999996 5678899999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 007533 535 PLFLGLIAAACG 546 (599)
Q Consensus 535 pLF~~Fv~aa~~ 546 (599)
|||.+|++||.+
T Consensus 217 ~LF~~Fv~aa~~ 228 (229)
T PRK06186 217 PLVRAFLRAARA 228 (229)
T ss_pred HHHHHHHHHHhc
Confidence 999999999865
No 9
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=100.00 E-value=2.3e-46 Score=377.50 Aligned_cols=233 Identities=62% Similarity=1.046 Sum_probs=213.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
++||+||||+++.|+|.|++++|.+++.+...++.+.|+++++++..+. ++.|.++|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~----------~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENA----------EEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccch----------hhhhccCCEEEECCCCCCcch
Confidence 5899999999999999999999999999998899999999987754321 246889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCC-CcCcCCCccccCceeeEE
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~-~~~~~GgtmrLG~~~v~l 454 (599)
++.+.++++++++++|+||||+|||+|+.+||+++++++++++.|+++.+.+|++.+|.+. ...++|+|||||.|.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999874 577889999999999999
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-CCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
.++ |++.++|+ +..+.++|+|+|+||++++..+...|++++|++. ||. +|++|+++||||+|||||||+.+.+.++
T Consensus 151 ~~~-s~l~~~~g-~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~-ieaie~~~~pf~lgvQ~HPE~~~~~~~~ 227 (235)
T cd01746 151 KPG-TLAHKYYG-KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGL-VEIVELPDHPFFVGTQFHPEFKSRPLKP 227 (235)
T ss_pred CCC-ChHHHHhC-CCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCe-EEEEEcCCCCcEEEEECCCCCcCCCCCc
Confidence 998 89999996 5567789999999999999876689999999999 565 9999999999999999999999999889
Q ss_pred hHHHHHHH
Q 007533 534 SPLFLGLI 541 (599)
Q Consensus 534 ~pLF~~Fv 541 (599)
++||.+|+
T Consensus 228 ~~lF~~fv 235 (235)
T cd01746 228 HPLFVGFV 235 (235)
T ss_pred cHHHHHhC
Confidence 99999995
No 10
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=4.2e-38 Score=326.76 Aligned_cols=278 Identities=18% Similarity=0.244 Sum_probs=215.0
Q ss_pred hhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHc-CCCCCCCchh
Q 007533 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVL-NLQGTTKEPL 278 (599)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l-~l~~~~~~~~ 278 (599)
.+.||.++++.++|+|+....++|||++.||..|++.++|+++.++|||. +.+.|| |.|++.+..- .+++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTRa-Ltr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTRA-LTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHHH-HHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 57899999999999999999999999999999999999999999999996 668888 8888743211 1110000001
Q ss_pred hHHHHH-----HHhhhcC------------CCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCC
Q 007533 279 LKEWTS-----RAEICDG------------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 341 (599)
Q Consensus 279 l~~W~~-----l~~~~~~------------~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~ 341 (599)
...|.. +++.++. .....+|+++ ||+ .+.+|++.|...|+++.+ ++.+.-
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~i-D~G----vK~nIlr~L~~rg~~vtV------VP~~t~-- 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVI-DFG----VKRNILRELVKRGCRVTV------VPADTS-- 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEE-EcC----ccHHHHHHHHHCCCeEEE------EcCCCC--
Confidence 111211 2222111 2235789999 698 889999999999999876 343321
Q ss_pred ccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCcc
Q 007533 342 ATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 419 (599)
Q Consensus 342 ~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg-~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~ 419 (599)
+.+. -.++|||+|++|||+|. .+..+.+++...+.++|+||||||||+++.|+|+++++|+.
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkF---- 276 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKF---- 276 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeeccc----
Confidence 1233 36899999999999995 47789999999999999999999999999999999999873
Q ss_pred ccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEE
Q 007533 420 EFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGK 499 (599)
Q Consensus 420 Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~ 499 (599)
+|+|. +|||.-... ++..| +.|||.|+|+++.+. ... +++..
T Consensus 277 -------------------GHrG~-----NhPV~dl~t---------grv~I-TSQNHGyaVd~~s~~---~~~-~vth~ 318 (368)
T COG0505 277 -------------------GHRGA-----NHPVKDLDT---------GRVYI-TSQNHGYAVDEDSLV---ETL-KVTHV 318 (368)
T ss_pred -------------------CCCCC-----CcCcccccC---------CeEEE-EecCCceecChhhcC---CCc-eeEEE
Confidence 67775 688764432 35556 689999999998432 222 78888
Q ss_pred eCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 500 DETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 500 s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
+.++..+|++++++.|.| +||||||.++.|+|.++||..|++.+.+..
T Consensus 319 nlnDgTvEGi~h~~~P~f-SVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 319 NLNDGTVEGIRHKDLPAF-SVQYHPEASPGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred eCCCCCccceecCCCceE-EEccCCCCCCCCcccHHHHHHHHHHHHHhh
Confidence 865555999999999965 999999999999999999999999987643
No 11
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=2.5e-35 Score=313.35 Aligned_cols=271 Identities=18% Similarity=0.261 Sum_probs=203.0
Q ss_pred hhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhH
Q 007533 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLK 280 (599)
Q Consensus 203 ~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~ 280 (599)
+++|.++++.++|||+....+++|+++.+|..|++.++|+++.+||||+ +.+.|| |.|++++..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR~-l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRA-LTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHHH-HHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999995 778899 9888654321111000011222
Q ss_pred HH-----HHHHhhhcCC------C----CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcccc
Q 007533 281 EW-----TSRAEICDGL------H----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 345 (599)
Q Consensus 281 ~W-----~~l~~~~~~~------~----~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~ 345 (599)
.| .+++..++.. . ...+|+++ ||+ ...|++++|+.+|+.+.+ ++.+. ..
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~vi-D~G----~k~nivr~L~~~G~~v~v------vp~~~-~~---- 211 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAI-DFG----VKRNILRELAERGCRVTV------VPATT-TA---- 211 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEE-eCC----cHHHHHHHHHHCCCEEEE------EeCCC-CH----
Confidence 23 2344444321 1 14689999 587 567999999999987644 22211 00
Q ss_pred CCchhhhHHHHhc-cCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCC
Q 007533 346 ENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 423 (599)
Q Consensus 346 ~~p~~y~~a~~~L-~~~DGIlVPGGfG~rg-~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~ 423 (599)
.+.. .++|||||+||||++. ....+.+++++.++++|+||||+|||+|+.++|+++.+++.
T Consensus 212 ---------~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~-------- 274 (360)
T PRK12564 212 ---------EEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKF-------- 274 (360)
T ss_pred ---------HHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCC--------
Confidence 0111 2799999999999975 36678899999998999999999999999999999876432
Q ss_pred CCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-C
Q 007533 424 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-T 502 (599)
Q Consensus 424 ~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-d 502 (599)
+|.|. ++++..... ++..+ .+|+|+|+|+++.+ +.++++++++. |
T Consensus 275 ---------------gh~G~-----~~pv~~~~~---------~~~~i-ts~~H~~~V~~~~l----p~~l~v~a~~~~D 320 (360)
T PRK12564 275 ---------------GHRGA-----NHPVKDLET---------GKVEI-TSQNHGFAVDEDSL----PANLEVTHVNLND 320 (360)
T ss_pred ---------------CccCC-----ceeeEECCC---------CcEEE-EecCcccEEccccc----CCceEEEEEeCCC
Confidence 23343 466654332 12233 57889999987654 56899999985 6
Q ss_pred CCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 503 SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 503 g~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
+. +|+++++++|+ +|||||||..++|.+..+||.+|++.
T Consensus 321 g~-iegi~~~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 321 GT-VEGLRHKDLPA-FSVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred Cc-EEEEEECCCCE-EEEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 65 99999999996 59999999999999999999999975
No 12
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=7.2e-35 Score=309.51 Aligned_cols=274 Identities=20% Similarity=0.283 Sum_probs=202.8
Q ss_pred hhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhh
Q 007533 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLL 279 (599)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l 279 (599)
.+++|..+++.++|||+....+++||++.+|..|++.++|+++.+||||+ +.+.|| |.|++++..-..+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR~-lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTRA-LVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHHH-HHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 35799999999999999999999999999999999999999999999995 778999 988865432111100000011
Q ss_pred HHHH-----HHHhhhcCC----------CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccc
Q 007533 280 KEWT-----SRAEICDGL----------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 344 (599)
Q Consensus 280 ~~W~-----~l~~~~~~~----------~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~ 344 (599)
..|. +++..++.. ....+|+++ ||+ ...|++++|+.+|+.+.+ +.|-. ++
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~vi-D~G----~k~ni~~~L~~~G~~v~v---vp~~~--~~----- 207 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVI-DFG----VKQNILRRLVKRGCEVTV---VPYDT--DA----- 207 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEE-eCC----cHHHHHHHHHHCCCEEEE---EcCCC--CH-----
Confidence 1221 234333311 112589999 687 667999999999987744 12211 11
Q ss_pred cCCchhhhHHHHhc-cCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccC
Q 007533 345 KENPDAYKAAWKLL-KGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 422 (599)
Q Consensus 345 ~~~p~~y~~a~~~L-~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~ 422 (599)
.+.. ..+|||||+||||++.. ...+..++++.+ ++|+||||||||+|+.++|+++.+++.
T Consensus 208 ----------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~~------- 269 (358)
T TIGR01368 208 ----------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMKF------- 269 (358)
T ss_pred ----------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccCc-------
Confidence 0122 24699999999999854 567888999987 999999999999999999999876432
Q ss_pred CCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-
Q 007533 423 PNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE- 501 (599)
Q Consensus 423 ~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~- 501 (599)
+|.|. ++|+..... ++..+ .+++|+|+|+++.+. ..++++++++.
T Consensus 270 ----------------gh~G~-----nhpV~~~~~---------~~v~i-tsqnH~~aV~~~~l~---~~~l~vta~~~n 315 (358)
T TIGR01368 270 ----------------GHRGG-----NHPVKDLIT---------GRVEI-TSQNHGYAVDPDSLP---AGDLEVTHVNLN 315 (358)
T ss_pred ----------------CcCCC-----ceeeEECCC---------CcEEE-eecCCCcEEcccccC---CCceEEEEEECC
Confidence 34443 566654332 12223 467899999876541 36899999985
Q ss_pred CCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHh
Q 007533 502 TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAAC 545 (599)
Q Consensus 502 dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~ 545 (599)
||. +|+++++++|+ +|||||||..+.|.+..+||.+|++++.
T Consensus 316 Dg~-Vegi~h~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 316 DGT-VEGIRHKDLPV-FSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred CCc-EEEEEECCCCE-EEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 565 99999999995 5999999999999999999999998874
No 13
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=4.8e-34 Score=302.84 Aligned_cols=272 Identities=19% Similarity=0.216 Sum_probs=203.0
Q ss_pred hhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhhH
Q 007533 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLLK 280 (599)
Q Consensus 203 ~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l~ 280 (599)
+++|.++++.++|||+....+++||++.+|..|++.++|+++.++|||. +.+.|| |.|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR~-lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTRA-LVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHHH-HHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 6899999999999999999999999999999999999999999999995 778999 98886543211 10 0011222
Q ss_pred HH---HHHHhhhcCC------CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhh
Q 007533 281 EW---TSRAEICDGL------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 351 (599)
Q Consensus 281 ~W---~~l~~~~~~~------~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y 351 (599)
.| .+++..++.. ....+|+++ ||+ .+.+++++|+.+|+.+.+. .| +. +++
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~vi-D~G----~k~ni~~~L~~~G~~v~vv---p~-~~-~~~----------- 202 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALI-DFG----YKKSILRSLSKRGCKVTVL---PY-DT-SLE----------- 202 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEE-CCC----HHHHHHHHHHHCCCeEEEE---EC-CC-CHH-----------
Confidence 22 2344444422 224689999 586 7899999999999876441 12 11 110
Q ss_pred hHHHHh-ccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCe
Q 007533 352 KAAWKL-LKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPC 429 (599)
Q Consensus 352 ~~a~~~-L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~v 429 (599)
+. -.++|||||+||||++.. ...+.+++.+.++ +|+||||||||+|+.++|+++.+++.
T Consensus 203 ----~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~-------------- 263 (354)
T PRK12838 203 ----EIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLPF-------------- 263 (354)
T ss_pred ----HHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCC--------------
Confidence 11 137999999999999754 4467788888876 99999999999999999999976432
Q ss_pred eeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-CCCeEEE
Q 007533 430 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEI 508 (599)
Q Consensus 430 i~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-dg~~vE~ 508 (599)
+|.|+ ++++..... ++.. ..+++|+|+++++.+. ..++.+++.+. |+. +|+
T Consensus 264 ---------gh~G~-----~hpV~~~~~---------~~~~-~ts~~H~~aV~~~sl~---~~~l~v~a~~~~Dg~-Vea 315 (354)
T PRK12838 264 ---------GHRGA-----NHPVIDLTT---------GRVW-MTSQNHGYVVDEDSLD---GTPLSVRFFNVNDGS-IEG 315 (354)
T ss_pred ---------CccCC-----ceEEEECCC---------CeEE-EeccchheEecccccC---CCCcEEEEEECCCCe-EEE
Confidence 23343 577765443 1222 2467899999875432 34688999864 555 999
Q ss_pred EEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 509 VELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 509 iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
++++++| ++|||||||+.++|.+..+||.+|++++.+
T Consensus 316 i~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 316 LRHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EEECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 9999999 569999999999999899999999998854
No 14
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.98 E-value=1.6e-32 Score=293.29 Aligned_cols=276 Identities=18% Similarity=0.260 Sum_probs=197.9
Q ss_pred hhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCCCCCCCchhh
Q 007533 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNLQGTTKEPLL 279 (599)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l~~~~~~~~l 279 (599)
.+++|.+++..++|||+....+++||++.+|..|+..++|+++.+||||. +.+.|| |.|++++..-..+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR~-lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTRA-LTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHHH-HHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 46899999999999999999999999999999999999999999999995 778899 888755432111100000011
Q ss_pred HHH-----HHHHhhhcC-----------------------CCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEE
Q 007533 280 KEW-----TSRAEICDG-----------------------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 331 (599)
Q Consensus 280 ~~W-----~~l~~~~~~-----------------------~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i 331 (599)
..| .+++..++. +....+|+++ |++ ...++++.|+.+|+++.+
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi-D~g----~k~ni~~~L~~~G~~v~v---- 219 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVI-DFG----VKYNILRRLKSFGCSITV---- 219 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEE-ECC----cHHHHHHHHHHCCCeEEE----
Confidence 111 223333221 0124789999 575 457899999999987644
Q ss_pred EEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc
Q 007533 332 DWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 410 (599)
Q Consensus 332 ~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~V 410 (599)
++.. ... ++ -...++||||++||||++.. ...+..++.+.+.++|+||||||||+|+.++|+++
T Consensus 220 --vp~~-~~~----------~~--i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v 284 (382)
T CHL00197 220 --VPAT-SPY----------QD--ILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKT 284 (382)
T ss_pred --EcCC-CCH----------HH--HhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEE
Confidence 2221 100 00 01237999999999999864 44566777777779999999999999999999998
Q ss_pred ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhc
Q 007533 411 LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLE 490 (599)
Q Consensus 411 lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le 490 (599)
.+++. +|.|. ++++.+. ++..+ ..++|+|.++++.+..
T Consensus 285 ~k~~~-----------------------Gh~g~-----n~pv~~~-----------~~v~i-tsq~H~~~v~~~sv~~-- 322 (382)
T CHL00197 285 FKLKF-----------------------GHRGL-----NHPSGLN-----------QQVEI-TSQNHGFAVNLESLAK-- 322 (382)
T ss_pred eccCC-----------------------CCCCC-----CEecCCC-----------CceEE-eecchheEeeccccCC--
Confidence 65431 23332 4444311 12223 3567999998876532
Q ss_pred cCCeEEEEEe-CCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 007533 491 NAGLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 491 ~~Gl~~sa~s-~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 547 (599)
.++.+++.+ .|+. +|+++++++|+ +|||||||+.+.|.+..++|.+|++.+.+.
T Consensus 323 -~~~~vt~~~~nDgt-vegi~h~~~pi-~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 323 -NKFYITHFNLNDGT-VAGISHSPKPY-FSVQYHPEASPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred -CCcEEEEEECCCCC-EEEEEECCCCc-EEEeeCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 368888876 4666 99999999996 599999999999998889999999988653
No 15
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.97 E-value=3.8e-32 Score=291.58 Aligned_cols=265 Identities=19% Similarity=0.250 Sum_probs=193.8
Q ss_pred hhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHH--HHHHHHHHHcCC-CCCCCchh
Q 007533 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR--KAHEAIFKVLNL-QGTTKEPL 278 (599)
Q Consensus 202 ~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~--g~~~~i~~~l~l-~~~~~~~~ 278 (599)
.+.+|.++++.++|||+....+++||++.+|..|+++++|+++.+||||. +.+.|| |.|++++..-+. +.......
T Consensus 120 ~d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTRa-Lt~~iR~~G~m~g~i~~~~~~~~~~~~~~ 198 (415)
T PLN02771 120 DDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTRA-ITRRLREDGSLIGVLSTEDSKTDEELLKM 198 (415)
T ss_pred hhhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHHH-HHHHHHhcCCeeEEEecCCCCCHHHHHHH
Confidence 36799999999999999999999999999999999999999999999995 778899 888765432111 00000001
Q ss_pred hHHH----HHHHhhhcCC---------------------CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEE
Q 007533 279 LKEW----TSRAEICDGL---------------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDW 333 (599)
Q Consensus 279 l~~W----~~l~~~~~~~---------------------~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~w 333 (599)
+..| .+++..++.. ....+|+++ +|+ +..+|++.|...|+.+.+
T Consensus 199 ~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G----~K~nIlr~L~~~G~~v~V------ 267 (415)
T PLN02771 199 SRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG----IKHNILRRLASYGCKITV------ 267 (415)
T ss_pred HHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC----hHHHHHHHHHHcCCeEEE------
Confidence 1222 1233332210 112689999 588 789999999999988755
Q ss_pred ecCCCCCCccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccc
Q 007533 334 IPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 411 (599)
Q Consensus 334 i~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vl 411 (599)
++.+.- +.+. ..++|||||+||||++.. ...++.++.+. .++|+||||||||+|+.++|+++.
T Consensus 268 vP~~~~--------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~ 332 (415)
T PLN02771 268 VPSTWP--------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTF 332 (415)
T ss_pred ECCCCC--------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEE
Confidence 222110 1122 247999999999999854 34556666655 479999999999999999999997
Q ss_pred cccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhcc
Q 007533 412 NLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLEN 491 (599)
Q Consensus 412 gl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~ 491 (599)
+++. +|.|+ ++|+..... +...+ ..++|+|+|+++.+ +
T Consensus 333 K~~~-----------------------Gh~G~-----n~pV~~~~~---------~~v~i-tsqnHg~aVd~~sL----p 370 (415)
T PLN02771 333 KMKF-----------------------GHHGG-----NHPVRNNRT---------GRVEI-SAQNHNYAVDPASL----P 370 (415)
T ss_pred ECCC-----------------------Ccccc-----eEEEEECCC---------CCEEE-EecCHHHhhccccC----C
Confidence 6542 45554 577654332 12223 46889999987654 5
Q ss_pred CCeEEEEEeC-CCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHH
Q 007533 492 AGLSFTGKDE-TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537 (599)
Q Consensus 492 ~Gl~~sa~s~-dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF 537 (599)
.++++++.+. |+. +|++++++.|+ +|||||||..+.|+|..++|
T Consensus 371 ~~~~vt~~nlnDgt-vegi~~~~~pi-~gVQFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 371 EGVEVTHVNLNDGS-CAGLAFPALNV-MSLQYHPEASPGPHDSDNAF 415 (415)
T ss_pred CceEEEEEeCCCCc-EEEEEECCCCE-EEEEcCCCCCCCCCcChhhC
Confidence 6899999874 565 99999999996 59999999999999998876
No 16
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.94 E-value=1.2e-26 Score=224.84 Aligned_cols=181 Identities=29% Similarity=0.435 Sum_probs=136.1
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-hhHHHHHHHHHHHcCC
Q 007533 312 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHRI 390 (599)
Q Consensus 312 ~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg-~eg~i~aik~are~~i 390 (599)
.|+.++|+..|+.+ ++.|++++.. ..++.+.++|||||+||++++. .+..+.+++++++.++
T Consensus 11 ~~l~~~l~~~~~~~----~v~~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 11 HSLVRALRELGIDV----EVVRVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKI 73 (192)
T ss_dssp HHHHHHHHHTTEEE----EEEETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeE----EEEECCCchh-------------hhhhhhcCCCEEEECCcCCccccccccccccccccccce
Confidence 37888888888654 4556654211 1112488999999999999988 7899999999999999
Q ss_pred CEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCcee
Q 007533 391 PYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF 470 (599)
Q Consensus 391 P~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~ 470 (599)
|+||||+|||+|+.++|++|...+ ..++.||++.+ ...+.+.++..+ ...
T Consensus 74 PilGIC~G~Q~la~~~G~~v~~~~----------------------~~~~~g~~~~~-----~~~~~~~~~~~~---~~~ 123 (192)
T PF00117_consen 74 PILGICLGHQILAHALGGKVVPSP----------------------EKPHHGGNIPI-----SETPEDPLFYGL---PES 123 (192)
T ss_dssp EEEEETHHHHHHHHHTTHEEEEEE----------------------SEEEEEEEEEE-----EEEEEHGGGTTS---TSE
T ss_pred EEEEEeehhhhhHHhcCCcccccc----------------------ccccccccccc-----cccccccccccc---ccc
Confidence 999999999999999999985321 12455665443 222111233332 345
Q ss_pred EEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 471 IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 471 I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
...++.|+|.|++. .+.+.|++++|++.++..++++.+.++| ++|+|||||+++++.++.+|+..|++|
T Consensus 124 ~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~nf~~~~ 192 (192)
T PF00117_consen 124 FKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGGPQLLKNFFLKA 192 (192)
T ss_dssp EEEEEEECEEEEEG---HHHHTTEEEEEEETTTTEEEEEEECTTS-EEEESSBTTSTTSTTHHHHHHHHHHHH
T ss_pred cccccccceeeecc---cccccccccccccccccccccccccccE-EEEEecCCcCCCCCCcchhhhheeEeC
Confidence 67889999999986 2237899999999887459999999999 679999999999998777777777664
No 17
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=3e-26 Score=223.33 Aligned_cols=190 Identities=26% Similarity=0.336 Sum_probs=128.2
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC-C-CCCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG-G-fG~r 373 (599)
++|+|+ ||+.. +..|+.+||+++|+++.+. ++| +.+..+|+||+|| | |++.
T Consensus 2 ~~i~II-Dyg~G--NL~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYGSG--NLRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcCcc--hHHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHHH
Confidence 579999 69865 8899999999999877552 222 5688999999999 4 4441
Q ss_pred --c--hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCC-----CCCCeeeeCCC-CCcCcCCC
Q 007533 374 --G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGG 443 (599)
Q Consensus 374 --g--~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~-----~~~~vi~~mpe-~~~~~~Gg 443 (599)
. -.+++++++.+.+.++|+||||||||+|. +. |+|.+.. .+..|+.+-++ .++|||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf-e~-----------SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF-ER-----------SEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh-hc-----------ccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 1 13678899998889999999999999994 32 2333221 24555555555 57899999
Q ss_pred ccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEccc
Q 007533 444 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFH 523 (599)
Q Consensus 444 tmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFH 523 (599)
+ .+.+.+++.++..+-.+ -..|+.|+|.+.+..-+ .+++.+..|...-++--++ .++|+|||
T Consensus 123 N------~l~~~~~~~l~~gi~~~---~~~YFVHSY~~~~~~~~-------~v~~~~~YG~~f~AaV~k~--N~~g~QFH 184 (204)
T COG0118 123 N------QVEFVRGHPLFKGIPDG---AYFYFVHSYYVPPGNPE-------TVVATTDYGEPFPAAVAKD--NVFGTQFH 184 (204)
T ss_pred c------eeeccCCChhhcCCCCC---CEEEEEEEEeecCCCCc-------eEEEeccCCCeeEEEEEeC--CEEEEecC
Confidence 6 23344443556655422 24689999998862111 1334344443222222222 36799999
Q ss_pred CCCcCCCCCchHHHHHHHHHH
Q 007533 524 PEYKSRPGKPSPLFLGLIAAA 544 (599)
Q Consensus 524 PE~ss~p~~p~pLF~~Fv~aa 544 (599)
||+|+.. +..++++|++.+
T Consensus 185 PEKSg~~--Gl~lL~NFl~~~ 203 (204)
T COG0118 185 PEKSGKA--GLKLLKNFLEWI 203 (204)
T ss_pred cccchHH--HHHHHHHHHhhc
Confidence 9999986 688999998753
No 18
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.93 E-value=8.1e-25 Score=211.58 Aligned_cols=176 Identities=25% Similarity=0.404 Sum_probs=127.8
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-hh
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg-~e 376 (599)
|+++ +|+. -.+++++|+.+|+.+.+. ..+. +++ .....++|||+++||++++. ..
T Consensus 1 i~i~-d~g~----~~~~~~~l~~~G~~~~~~----~~~~-~~~--------------~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVI-DFGV----KHNILRELLKRGCEVTVV----PYNT-DAE--------------EILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEE-ecCc----HHHHHHHHHHCCCeEEEE----ECCC-CHH--------------HHhhcCCCEEEECCCCCChhHhH
Confidence 5677 5773 248899999999876431 1111 110 01245799999999998754 36
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEec
Q 007533 377 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 456 (599)
Q Consensus 377 g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~ 456 (599)
..+..++++.++++|+||||+|||+|+.++|++|...+. ++.|. .+++....
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~~ 108 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKF-----------------------GHRGS-----NHPVKDLI 108 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCC-----------------------CCCCC-----ceeeEEcC
Confidence 677889999999999999999999999999999864321 11122 23443322
Q ss_pred CCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC-CCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 457 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 457 ~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~-dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
. .+ ....+++|+|+++++.+ +.+++++|++. ++. +|+++++++|+ +|+|||||+..++.+..+
T Consensus 109 ~---------~~-~~~v~~~H~~~v~~~~l----p~~~~v~a~s~~~~~-i~a~~~~~~~i-~GvQfHPE~~~~~~~~~~ 172 (178)
T cd01744 109 T---------GR-VYITSQNHGYAVDPDSL----PGGLEVTHVNLNDGT-VEGIRHKDLPV-FSVQFHPEASPGPHDTEY 172 (178)
T ss_pred C---------CC-cEEEEcCceEEEccccc----CCceEEEEEECCCCc-EEEEEECCCCe-EEEeeCCCCCCCCCCchH
Confidence 1 11 12246789999986554 66899999985 555 99999999995 699999999999888899
Q ss_pred HHHHHH
Q 007533 536 LFLGLI 541 (599)
Q Consensus 536 LF~~Fv 541 (599)
||.+|+
T Consensus 173 lf~~f~ 178 (178)
T cd01744 173 LFDEFL 178 (178)
T ss_pred hHhhhC
Confidence 999995
No 19
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.93 E-value=3.6e-25 Score=220.83 Aligned_cols=167 Identities=26% Similarity=0.452 Sum_probs=130.7
Q ss_pred HHHhccCCCEEEeCCC-------CCCCc-----------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccC
Q 007533 354 AWKLLKGADGILVPGG-------FGNRG-----------VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 415 (599)
Q Consensus 354 a~~~L~~~DGIlVPGG-------fG~rg-----------~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~d 415 (599)
+...+...|||++||| +|... ....+.+++.|.+.++|+||||.|||+|+++||++... +
T Consensus 54 ~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q--~ 131 (243)
T COG2071 54 ARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ--D 131 (243)
T ss_pred HHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh--h
Confidence 3457889999999999 23211 13478899999999999999999999999999998742 2
Q ss_pred CCccccCCCCCCCeeeeCCCCCcCcC-CCccccCceeeEEecCCchhhhccCCc-eeEEeeeeeeeeeCchhhhhhccCC
Q 007533 416 ANSTEFDPNTKNPCVIFMPEGSKTHM-GGTMRLGSRRTYFQIKDCKSAKLYGNR-TFIDERHRHRYEVNPDMIARLENAG 493 (599)
Q Consensus 416 A~S~Ef~~~~~~~vi~~mpe~~~~~~-GgtmrLG~~~v~l~~~~s~l~~iyg~~-~~I~erHrHrYeVnp~~v~~le~~G 493 (599)
..... .. ..|. +....+..|++.+.++ |.+++++++. ..++..|+ +.+++| ..|
T Consensus 132 i~~~~--------------~~-~~H~~~~~~~~~~H~V~i~~~-s~La~i~g~~~~~VNS~Hh-------QaIk~L-a~~ 187 (243)
T COG2071 132 ISEQP--------------GH-IDHRQPNPVHIESHEVHIEPG-SKLAKILGESEFMVNSFHH-------QAIKKL-APG 187 (243)
T ss_pred hhccc--------------cc-ccccCCCCcccceeEEEecCC-ccHHHhcCccceeecchHH-------HHHHHh-CCC
Confidence 11110 00 1121 2233345899999998 8999999855 56777774 899999 899
Q ss_pred eEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCC-chHHHHHHHHHHhcc
Q 007533 494 LSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK-PSPLFLGLIAAACGQ 547 (599)
Q Consensus 494 l~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~-p~pLF~~Fv~aa~~~ 547 (599)
|+++|+++||. ||+||+++++|++|||||||+...... ...||+.|++++...
T Consensus 188 L~V~A~a~DG~-VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 188 LVVEARAPDGT-VEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred cEEEEECCCCc-EEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 99999999998 999999999999999999999988763 456999999998764
No 20
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.92 E-value=4.2e-25 Score=247.44 Aligned_cols=293 Identities=18% Similarity=0.262 Sum_probs=220.7
Q ss_pred EEeeeeeeeecCCCccccCC-chhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhH
Q 007533 177 LIHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPL 255 (599)
Q Consensus 177 ~ihv~~vp~~~~~~e~ktkp-tq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl 255 (599)
.|-|---|.|+.-|-- +++ -+..-+.++|-.|++.+||+++...-.++|++.-||-.|+.++.|.+++|+||| .+..
T Consensus 49 QiLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk 126 (1435)
T KOG0370|consen 49 QILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTK 126 (1435)
T ss_pred eEEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHH
Confidence 3444455777665655 444 345566778999999999999999999999999999999999999999999999 5778
Q ss_pred HHH--HHHHHHHHHcCCCCCCCchhhHHH-----HHHHhhhcC-------CCCceEEEEEeecCCCcchHHHHHHHHHHc
Q 007533 256 LLR--KAHEAIFKVLNLQGTTKEPLLKEW-----TSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHA 321 (599)
Q Consensus 256 ~L~--g~~~~i~~~l~l~~~~~~~~l~~W-----~~l~~~~~~-------~~~~v~IaiVGkY~~l~DaY~SIi~AL~ha 321 (599)
.|| |.|-. +|-++. .+.+ | ++++..+.. ..+..+|+.+ +++ .+.++++.|...
T Consensus 127 ~lReqGSmLg---kl~~e~---~~~~--~vdpn~~nLvs~VS~Kep~~y~~Gk~~~I~ai-DcG----~K~N~IRcL~~R 193 (1435)
T KOG0370|consen 127 KLREQGSMLG---KLSIEK---SPVL--FVDPNKRNLVSQVSTKEPKVYGDGKSLRILAI-DCG----LKYNQIRCLVKR 193 (1435)
T ss_pred HHHhcCccee---EEEecC---CCCc--ccCCCcccchhhheeccceEEcCCcccEEEEc-ccC----chHHHHHHHHHh
Confidence 888 76632 222321 1110 2 223433331 3456789998 577 778999999999
Q ss_pred CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch-hHHHHHHHHHHHcCCCEEEEehhHH
Q 007533 322 SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQ 400 (599)
Q Consensus 322 G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-eg~i~aik~are~~iP~LGICLGmQ 400 (599)
|+++.+ +.|-. .+ .-.++|||++++|||+|.. ...+..++...+.++|+||||+|||
T Consensus 194 Ga~vtV---vPw~~--~i-----------------~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQ 251 (1435)
T KOG0370|consen 194 GAEVTV---VPWDY--PI-----------------AKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQ 251 (1435)
T ss_pred CceEEE---ecCCc--cc-----------------cccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhH
Confidence 999876 23421 11 1128999999999999975 6677888888888899999999999
Q ss_pred HHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeee
Q 007533 401 VAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYE 480 (599)
Q Consensus 401 ll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYe 480 (599)
+++.+.|.++++|+.. ++|. ++||.-... ++..| +.++|.|.
T Consensus 252 llA~AaGakT~KmKyG-----------------------NRGh-----NiP~~~~~t---------Grc~I-TSQNHGYA 293 (1435)
T KOG0370|consen 252 LLALAAGAKTYKMKYG-----------------------NRGH-----NIPCTCRAT---------GRCFI-TSQNHGYA 293 (1435)
T ss_pred HHHHhhCCceEEeecc-----------------------ccCC-----CccceeccC---------ceEEE-EecCCcee
Confidence 9999999999887643 3443 566654332 45666 58999999
Q ss_pred eCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcchh
Q 007533 481 VNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLD 549 (599)
Q Consensus 481 Vnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~ 549 (599)
|+++.+ +.|++..-.+.+....|++.|...||| .+|||||.++.|.+...+|..|+....+...
T Consensus 294 VD~~tL----p~gWk~lFvN~NDgSNEGI~Hss~P~f-SvQFHPEat~GP~DTeyLFDiFi~lvkk~ks 357 (1435)
T KOG0370|consen 294 VDPATL----PAGWKPLFVNANDGSNEGIMHSSKPFF-SVQFHPEATPGPHDTEYLFDVFIELVKKSKS 357 (1435)
T ss_pred eccccc----cCCCchheeecccCCCceEecCCCCce-eeecCCcCCCCCcchHHHHHHHHHHHHHHhc
Confidence 999876 456665555533333899999999976 9999999999999999999999999876543
No 21
>PLN02335 anthranilate synthase
Probab=99.92 E-value=2.7e-24 Score=215.46 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=133.3
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
...+|++|+.|. +|. ++.+.|+..|+++.+ +..+.++.+. -...++|||||+||||+
T Consensus 17 ~~~~ilviD~~d----sft~~i~~~L~~~g~~~~v------~~~~~~~~~~------------~~~~~~d~iVisgGPg~ 74 (222)
T PLN02335 17 QNGPIIVIDNYD----SFTYNLCQYMGELGCHFEV------YRNDELTVEE------------LKRKNPRGVLISPGPGT 74 (222)
T ss_pred ccCcEEEEECCC----CHHHHHHHHHHHCCCcEEE------EECCCCCHHH------------HHhcCCCEEEEcCCCCC
Confidence 446899996554 555 799999999988755 2222221100 11346899999999999
Q ss_pred CchhHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 373 RGVQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 373 rg~eg~-i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
+...+. ...++ +...++|+||||||||+|+.++|++|...+.. ...|+ ..+
T Consensus 75 p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~----------------------~~~G~-----~~~ 126 (222)
T PLN02335 75 PQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFG----------------------VMHGK-----SSP 126 (222)
T ss_pred hhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCCc----------------------cccCc-----eee
Confidence 865442 22232 33457999999999999999999988542110 01122 223
Q ss_pred eEEecC--CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC
Q 007533 452 TYFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 452 v~l~~~--~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~ 529 (599)
+.+... .+++..+. .. ....+.|+|.|+++.++ +.++.++|+++++. +++++++++|+++|+|||||....
T Consensus 127 v~~~~~~~~~Lf~~l~-~~--~~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQfHPE~~~~ 199 (222)
T PLN02335 127 VHYDEKGEEGLFSGLP-NP--FTAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQFHPESIIT 199 (222)
T ss_pred eEECCCCCChhhhCCC-CC--CEEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEeCCCCCCC
Confidence 333221 13455443 12 33578899998765432 33489999998887 999999999988899999999876
Q ss_pred CCCchHHHHHHHHHHhcch
Q 007533 530 PGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 530 p~~p~pLF~~Fv~aa~~~~ 548 (599)
+ ++..+|++|++++..+.
T Consensus 200 ~-~g~~i~~nF~~~~~~~~ 217 (222)
T PLN02335 200 T-EGKTIVRNFIKIIEKKE 217 (222)
T ss_pred h-hHHHHHHHHHHHHHhhc
Confidence 5 67899999999876544
No 22
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.92 E-value=3.5e-24 Score=209.14 Aligned_cols=182 Identities=20% Similarity=0.256 Sum_probs=128.2
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHH-hccCCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIlVPGGfG~rg~ 375 (599)
|.+|+.|. +|. ++++.|+..|+++.+ +..++++. .+ ...++||||++||||++..
T Consensus 2 il~idn~D----sft~nl~~~l~~~g~~v~v------~~~~~~~~-------------~~~~~~~~d~iils~GPg~p~~ 58 (187)
T PRK08007 2 ILLIDNYD----SFTWNLYQYFCELGADVLV------KRNDALTL-------------ADIDALKPQKIVISPGPCTPDE 58 (187)
T ss_pred EEEEECCC----ccHHHHHHHHHHCCCcEEE------EeCCCCCH-------------HHHHhcCCCEEEEcCCCCChHH
Confidence 78898777 444 689999999887654 22222211 01 1237899999999999864
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.+ .+..++. .+.++|+||||+|||+|+.++|++|..... ++.|+ ..++..
T Consensus 59 ~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~-----------------------~~~g~-----~~~v~~ 109 (187)
T PRK08007 59 AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAK-----------------------VMHGK-----TSPITH 109 (187)
T ss_pred CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCC-----------------------cccCC-----ceEEEE
Confidence 33 3455554 467899999999999999999999854321 12233 233443
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
... +++..+. .. +...+.|+|.|.+.. + +.+++++|+++++. +|+++++++| ++|+|||||..+.+ .+.
T Consensus 110 ~~~-~l~~~~~-~~--~~v~~~H~~~v~~~~---l-p~~~~v~a~~~~~~-i~a~~~~~~~-i~GvQfHPE~~~t~-~G~ 178 (187)
T PRK08007 110 NGE-GVFRGLA-NP--LTVTRYHSLVVEPDS---L-PACFEVTAWSETRE-IMGIRHRQWD-LEGVQFHPESILSE-QGH 178 (187)
T ss_pred CCC-CcccCCC-CC--cEEEEcchhEEccCC---C-CCCeEEEEEeCCCc-EEEEEeCCCC-EEEEEeCCcccCCc-chH
Confidence 333 4554442 22 335677888886443 3 67999999999987 9999999998 56999999997765 578
Q ss_pred HHHHHHHH
Q 007533 535 PLFLGLIA 542 (599)
Q Consensus 535 pLF~~Fv~ 542 (599)
.+|++|++
T Consensus 179 ~il~nFl~ 186 (187)
T PRK08007 179 QLLANFLH 186 (187)
T ss_pred HHHHHHhh
Confidence 99999985
No 23
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.91 E-value=2.1e-23 Score=213.05 Aligned_cols=165 Identities=26% Similarity=0.359 Sum_probs=118.7
Q ss_pred HhccCCCEEEeCCCCCCC-----------ch------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCc
Q 007533 356 KLLKGADGILVPGGFGNR-----------GV------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 418 (599)
Q Consensus 356 ~~L~~~DGIlVPGGfG~r-----------g~------eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S 418 (599)
+.++.+||||++||..+- .. +..++++++|.+.++|+||||+|||+|++++|+++.. +. +
T Consensus 57 ~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~--~~-~ 133 (254)
T PRK11366 57 QLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHR--KL-C 133 (254)
T ss_pred HHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEee--cc-c
Confidence 456789999999985321 11 2457889999999999999999999999999999853 11 0
Q ss_pred cccCCCCCCCeeeeCCCCCcCcC-CCc--c---ccCceeeEEecCCchhhhccCCce--eEEeeeeeeeeeCchhhhhhc
Q 007533 419 TEFDPNTKNPCVIFMPEGSKTHM-GGT--M---RLGSRRTYFQIKDCKSAKLYGNRT--FIDERHRHRYEVNPDMIARLE 490 (599)
Q Consensus 419 ~Ef~~~~~~~vi~~mpe~~~~~~-Ggt--m---rLG~~~v~l~~~~s~l~~iyg~~~--~I~erHrHrYeVnp~~v~~le 490 (599)
+. +.. . .|. .+. + ..+.+.+.+.++ +++..++++.. .++.+| . +.+..+
T Consensus 134 -~~-~~~----~--------~h~~~~~~~~~~~~~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H--~-----q~V~~l- 190 (254)
T PRK11366 134 -EQ-PEL----L--------EHREDPELPVEQQYAPSHEVQVEEG-GLLSALLPECSNFWVNSLH--G-----QGAKVV- 190 (254)
T ss_pred -cc-ccc----c--------ccccCCccccccccCCceEEEECCC-CcHHHhcCCCceEEeehHH--H-----HHHhhc-
Confidence 00 000 0 000 000 0 012467787777 78888874322 344444 2 667777
Q ss_pred cCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc-hHHHHHHHHHHhcc
Q 007533 491 NAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP-SPLFLGLIAAACGQ 547 (599)
Q Consensus 491 ~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p-~pLF~~Fv~aa~~~ 547 (599)
+.|++++|+++||. +|++|++++||++|||||||+...+... ..||++|+++|...
T Consensus 191 ~~gl~v~A~s~dg~-ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~ 247 (254)
T PRK11366 191 SPRLRVEARSPDGL-VEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHH 247 (254)
T ss_pred ccceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHH
Confidence 89999999999997 9999999999989999999998765433 57999999998753
No 24
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.91 E-value=2.2e-23 Score=203.59 Aligned_cols=186 Identities=17% Similarity=0.216 Sum_probs=129.3
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
+||.+++.|.++ +| ++.++|+.+|+++.+. ...+.+ + +.++++||||++||+|.+..
T Consensus 2 ~~iliid~~dsf--~~-~i~~~l~~~g~~~~v~------~~~~~~-------~-------~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSF--TF-NLVDLIRKLGVPMQVV------NVEDLD-------L-------DEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCch--HH-HHHHHHHHcCCcEEEE------ECCccC-------h-------hHhccCCEEEECCCCCChHH
Confidence 689999877754 34 4999999999877552 222111 1 35678999999999996533
Q ss_pred -hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 -eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
......++. .+.++|+||||||||+|+.++|++|..++. ..|.++ .++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~----------------------~~~g~~------~~v~~ 109 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNN----------------------VRHGQQ------RPLKV 109 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCC----------------------CccCce------EEEEE
Confidence 223455554 466899999999999999999999854211 123222 23443
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
.+++.++..+- . ....++.|+|.+.+..+ +.++..++.+.++. +++++++++| ++|+|||||..+.+ ...
T Consensus 110 ~~~~~l~~~~~-~--~~~v~~~Hs~~v~~~~l----p~~l~~~a~~~~~~-i~a~~~~~~p-i~GvQFHPE~~~~~-~g~ 179 (190)
T PRK06895 110 RSNSPLFDGLP-E--EFNIGLYHSWAVSEENF----PTPLEITAVCDENV-VMAMQHKTLP-IYGVQFHPESYISE-FGE 179 (190)
T ss_pred CCCChhhhcCC-C--ceEEEcchhheeccccc----CCCeEEEEECCCCc-EEEEEECCCC-EEEEEeCCCcCCCc-chH
Confidence 33323444432 2 23457889998875432 46788999887766 9999999999 56999999987776 467
Q ss_pred HHHHHHHHH
Q 007533 535 PLFLGLIAA 543 (599)
Q Consensus 535 pLF~~Fv~a 543 (599)
.++++|++.
T Consensus 180 ~il~nf~~~ 188 (190)
T PRK06895 180 QILRNWLAI 188 (190)
T ss_pred HHHHHHHhh
Confidence 899999864
No 25
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.91 E-value=1.7e-23 Score=202.92 Aligned_cols=188 Identities=21% Similarity=0.295 Sum_probs=136.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
++|.+++.|.++. .++++.|+..|+++.+. .+. +++. .+-...++|+|++++|||.|..
T Consensus 2 ~~IL~IDNyDSFt---yNLv~yl~~lg~~v~V~-----rnd-~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFT---YNLVQYLRELGAEVTVV-----RND-DISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchH---HHHHHHHHHcCCceEEE-----ECC-ccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 5799999887552 37888999999776552 111 2211 0112356899999999999987
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.| ..++++.+ ..++|+||||||||.++.+||++|...+. +-.| ......
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~-----------------------~~HG------K~s~i~ 110 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKE-----------------------PMHG------KTSIIT 110 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCC-----------------------CcCC------eeeeee
Confidence 66 66778877 66899999999999999999999854321 1112 222222
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCch
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 534 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~ 534 (599)
..++.+++.+. +...+ .|+ |+..++++.+ +..++++|++.++..+++++++++|. +|+|||||.--++. ++
T Consensus 111 h~g~~iF~glp-~~f~v-~RY-HSLvv~~~~l----P~~l~vtA~~~d~~~IMai~h~~~pi-~gvQFHPESilT~~-G~ 181 (191)
T COG0512 111 HDGSGLFAGLP-NPFTV-TRY-HSLVVDPETL----PEELEVTAESEDGGVIMAVRHKKLPI-YGVQFHPESILTEY-GH 181 (191)
T ss_pred cCCcccccCCC-CCCEE-Eee-EEEEecCCCC----CCceEEEEEeCCCCEEEEEeeCCCCE-EEEecCCccccccc-hH
Confidence 23335666665 23333 677 8998888765 66899999998876699999999996 59999999887764 78
Q ss_pred HHHHHHHHH
Q 007533 535 PLFLGLIAA 543 (599)
Q Consensus 535 pLF~~Fv~a 543 (599)
.++++|++.
T Consensus 182 ~il~Nfl~~ 190 (191)
T COG0512 182 RILENFLRL 190 (191)
T ss_pred HHHHHHHhh
Confidence 999999975
No 26
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.91 E-value=1.9e-23 Score=203.35 Aligned_cols=185 Identities=21% Similarity=0.244 Sum_probs=130.6
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc--CCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlVPGGfG~rg~ 375 (599)
|++| ||+.. .-.++.++|+..|+++.+ .+.+++ . +.+. ++||||+|||+++...
T Consensus 1 i~ii-D~g~~--~~~~l~~~l~~~g~~~~~----~~~~~~-~----------------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGSQ--YTQLIARRLRELGVYSEL----VPNTTP-L----------------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCch--HHHHHHHHHHHcCCEEEE----EeCCCC-H----------------HHHhhcCCCEEEECCCCCCcCc
Confidence 5678 57643 344788999999987643 222211 1 1222 3569999999988665
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
......++.+.+.++|+||||+|||+|+.++|++|...+. +++|+ .++.+.
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~-----------------------~~~g~------~~v~~~ 107 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEK-----------------------REYGK------AELEIL 107 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCC-----------------------cccee------EEEEEe
Confidence 5567788888999999999999999999999988853211 23343 455555
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
+.+.++..+. ..+..++.|+|.+. .+ +.+++++|.++++. +++++.++.|+ +|+|||||++.++ ++..
T Consensus 108 ~~~~l~~~~~---~~~~~~~~H~~~v~-----~l-~~~~~vla~~~~~~-v~a~~~~~~~~-~g~QfHPE~~~~~-~g~~ 175 (188)
T TIGR00888 108 DEDDLFRGLP---DESTVWMSHGDKVK-----EL-PEGFKVLATSDNCP-VAAMAHEEKPI-YGVQFHPEVTHTE-YGNE 175 (188)
T ss_pred cCCHhhcCCC---CCcEEEeEccceee-----cC-CCCCEEEEECCCCC-eEEEEECCCCE-EEEeeCCccCCCh-hhHH
Confidence 5423333331 23445677888763 34 67899999988765 99999999885 6999999998775 4789
Q ss_pred HHHHHHHHHhcc
Q 007533 536 LFLGLIAAACGQ 547 (599)
Q Consensus 536 LF~~Fv~aa~~~ 547 (599)
+|++|+.+++++
T Consensus 176 i~~~f~~~~~~~ 187 (188)
T TIGR00888 176 LLENFVYDVCGC 187 (188)
T ss_pred HHHHHHHHhhCC
Confidence 999999965543
No 27
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.91 E-value=2.1e-23 Score=203.38 Aligned_cols=185 Identities=21% Similarity=0.270 Sum_probs=125.8
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.|++.| |+|. ++.+.|+..|+++.+. +....+.+ ..+.+ ++||||++||+|++...
T Consensus 2 iliid~~----d~f~~~i~~~l~~~g~~~~v~------~~~~~~~~-----------~~~~~-~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 2 ILLIDNY----DSFTYNLVQYLGELGAEVVVY------RNDEITLE-----------EIEAL-NPDAIVLSPGPGTPAEA 59 (189)
T ss_pred EEEEECC----CchHHHHHHHHHHCCCcEEEE------ECCCCCHH-----------HHHhC-CCCEEEEcCCCCChHHc
Confidence 7888644 4666 7999999999887542 22111100 01223 48999999999997432
Q ss_pred -HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 -g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
.....++. ...++|+||||+|||+|+.++|++|...+. .+.|+ .+++. .
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~-----------------------~~~g~-----~~~v~-~ 109 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKE-----------------------IMHGK-----TSPIE-H 109 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCC-----------------------cccCc-----eeEEE-e
Confidence 23345554 456899999999999999999998854221 11232 12333 2
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
.+++++..+. . ....+|.|+|.|.+. .+ +.+++++|+++++. +|+++++++| ++|+|||||+...+ ++.+
T Consensus 110 ~~~~l~~~~~-~--~~~v~~~H~~~v~~~---~l-p~~~~~la~s~~~~-i~a~~~~~~~-~~gvQfHPE~~~~~-~g~~ 179 (189)
T PRK05670 110 DGSGIFAGLP-N--PFTVTRYHSLVVDRE---SL-PDCLEVTAWTDDGE-IMGVRHKELP-IYGVQFHPESILTE-HGHK 179 (189)
T ss_pred CCCchhccCC-C--CcEEEcchhheeccc---cC-CCceEEEEEeCCCc-EEEEEECCCC-EEEEeeCCCcCCCc-chHH
Confidence 2223333332 1 234578899988642 23 67899999997775 9999999999 56999999997654 6889
Q ss_pred HHHHHHHHH
Q 007533 536 LFLGLIAAA 544 (599)
Q Consensus 536 LF~~Fv~aa 544 (599)
+|++|++.+
T Consensus 180 i~~~F~~~~ 188 (189)
T PRK05670 180 LLENFLELA 188 (189)
T ss_pred HHHHHHHhh
Confidence 999999875
No 28
>CHL00101 trpG anthranilate synthase component 2
Probab=99.91 E-value=2.4e-23 Score=203.58 Aligned_cols=186 Identities=19% Similarity=0.261 Sum_probs=127.5
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHH-hccCCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIlVPGGfG~rg~ 375 (599)
|.+++.|. +|. ++.+.|+..|+++.+ ++..+.+. .+ ...++||||++||+|++..
T Consensus 2 iliid~~d----sft~~l~~~l~~~g~~~~v------~~~~~~~~-------------~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 2 ILIIDNYD----SFTYNLVQSLGELNSDVLV------CRNDEIDL-------------SKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred EEEEECCC----chHHHHHHHHHhcCCCEEE------EECCCCCH-------------HHHhhCCCCEEEECCCCCChHH
Confidence 77886554 555 689999999987754 23222110 01 2357999999999998754
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
.+....+..+.+.++|+||||+|||+|+.++|++|...+. ...|++ ..+. .
T Consensus 59 ~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-----------------------~~~g~~-----~~~~-~ 109 (190)
T CHL00101 59 SGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPK-----------------------PMHGKT-----SKIY-H 109 (190)
T ss_pred CcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCC-----------------------cccCce-----eeEe-e
Confidence 4433334345678999999999999999999999854321 112332 1121 2
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
..+.++..+. ......+.|+|.|++.. + +.++.++|+++++. +|+++++++||++|+|||||...++ ....
T Consensus 110 ~~~~l~~~~~---~~~~v~~~H~~~v~~~~---l-p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQfHPE~~~~~-~g~~ 180 (190)
T CHL00101 110 NHDDLFQGLP---NPFTATRYHSLIIDPLN---L-PSPLEITAWTEDGL-IMACRHKKYKMLRGIQFHPESLLTT-HGQQ 180 (190)
T ss_pred CCcHhhccCC---CceEEEcchhheeeccc---C-CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCccCCCh-hHHH
Confidence 2213343332 12345788999886532 3 67899999998887 9999999999788999999987554 5788
Q ss_pred HHHHHHHHH
Q 007533 536 LFLGLIAAA 544 (599)
Q Consensus 536 LF~~Fv~aa 544 (599)
+|++|++.+
T Consensus 181 l~~nf~~~~ 189 (190)
T CHL00101 181 ILRNFLSLS 189 (190)
T ss_pred HHHHHHhhh
Confidence 999998753
No 29
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.91 E-value=3.5e-23 Score=202.19 Aligned_cols=184 Identities=18% Similarity=0.278 Sum_probs=129.4
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+|+.|. +|. ++++.|+..|+++.+. ..+..+++ +. +. .++|||||+||||++...
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~v~v~----~~~~~~~~------------~~-~~-~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 2 VLMIDNYD----SFTYNLVQYFCELGAEVVVK----RNDSLTLQ------------EI-EA-LLPLLIVISPGPCTPNEA 59 (188)
T ss_pred EEEEECCc----CHHHHHHHHHHHcCCceEEE----ECCCCCHH------------HH-Hh-cCCCEEEEcCCCCChhhc
Confidence 77887665 665 7899999998876441 11111111 01 11 268999999999997542
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 g-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
+ ....++++ ..++|+||||+|||+|+.++|++|...+. ...|+ ..++...
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~-----------------------~~~g~-----~~~v~~~ 110 (188)
T TIGR00566 60 GISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANT-----------------------VMHGK-----TSEIEHN 110 (188)
T ss_pred chhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCC-----------------------ccccc-----eEEEEEC
Confidence 2 35777777 57899999999999999999999854211 11232 2345544
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
+. +++..+++ + ....+.|+|.|+++.+ +.+++++|++.++..+++++++++|+ +|+|||||...++ .+..
T Consensus 111 ~~-~~~~~l~~-~--~~v~~~H~~~v~~~~l----~~~~~v~a~s~~~~~v~a~~~~~~~i-~gvQfHPE~~~t~-~G~~ 180 (188)
T TIGR00566 111 GA-GIFRGLFN-P--LTATRYHSLVVEPETL----PTCFPVTAWEEENIEIMAIRHRDLPL-EGVQFHPESILSE-QGHQ 180 (188)
T ss_pred CC-ccccCCCC-C--cEEEEcccceEecccC----CCceEEEEEcCCCCEEEEEEeCCCCE-EEEEeCCCccCCc-ccHH
Confidence 43 55666653 2 3456789998875443 67899999988753599999999995 6999999997764 6889
Q ss_pred HHHHHHH
Q 007533 536 LFLGLIA 542 (599)
Q Consensus 536 LF~~Fv~ 542 (599)
+|++|+.
T Consensus 181 il~nfl~ 187 (188)
T TIGR00566 181 LLANFLH 187 (188)
T ss_pred HHHHHHh
Confidence 9999985
No 30
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.90 E-value=7.1e-23 Score=201.42 Aligned_cols=188 Identities=19% Similarity=0.245 Sum_probs=128.2
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+|+.|. +|. ++++.|+..|+++.+ +..++...+ ++ ...++||||++||||++...
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~v~v------~~~~~~~~~----------~~--~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYD----SFTFNLVQFLGELGQELVV------KRNDEVTIS----------DI--ENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCC----ccHHHHHHHHHHCCCcEEE------EeCCCCCHH----------HH--hhCCCCEEEECCCCCChHhC
Confidence 77887665 555 689999999887654 222211100 00 12478999999999997543
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 g-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
+ ....++. .+.++|+||||||||+|+.++|++|...+. ...|++ .++..
T Consensus 60 ~~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~-----------------------~~~G~~-----~~i~~- 109 (195)
T PRK07649 60 GISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAER-----------------------LMHGKT-----SLMHH- 109 (195)
T ss_pred CCchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCC-----------------------cccCCe-----EEEEE-
Confidence 3 3344443 356899999999999999999999854321 112332 22222
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
.+.+++..+.. . ....++|++.+.++. + +.|++++|.++++. +++++++++| ++|+|||||...++ .+..
T Consensus 110 ~~~~lf~~~~~-~--~~v~~~H~~~v~~~~---l-p~~~~~~a~s~~~~-v~a~~~~~~~-i~gvQFHPE~~~t~-~g~~ 179 (195)
T PRK07649 110 DGKTIFSDIPN-P--FTATRYHSLIVKKET---L-PDCLEVTSWTEEGE-IMAIRHKTLP-IEGVQFHPESIMTS-HGKE 179 (195)
T ss_pred CCChhhcCCCC-C--CEEEEechheEeccc---C-CCCeEEEEEcCCCc-EEEEEECCCC-EEEEEECCCCCCCc-cHHH
Confidence 22245555542 2 335677888874332 3 67899999998887 9999999999 46999999987665 5789
Q ss_pred HHHHHHHHHhcc
Q 007533 536 LFLGLIAAACGQ 547 (599)
Q Consensus 536 LF~~Fv~aa~~~ 547 (599)
+|++|++.....
T Consensus 180 il~nfl~~~~~~ 191 (195)
T PRK07649 180 LLQNFIRKYSPS 191 (195)
T ss_pred HHHHHHHHhHhh
Confidence 999999877543
No 31
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.90 E-value=1.6e-22 Score=196.02 Aligned_cols=183 Identities=21% Similarity=0.257 Sum_probs=124.5
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+++.|+ .|. .+.++|+.+|+++.+. .| +.-.+ ....+.++||||++||+|.+...
T Consensus 1 il~~~~~~----~~~~~~~~~l~~~G~~~~~~---~~---~~~~~------------~~~~~~~~dgvil~gG~~~~~~~ 58 (184)
T cd01743 1 ILLIDNYD----SFTYNLVQYLRELGAEVVVV---RN---DEITL------------EELELLNPDAIVISPGPGHPEDA 58 (184)
T ss_pred CEEEeCCC----ccHHHHHHHHHHcCCceEEE---eC---CCCCH------------HHHhhcCCCEEEECCCCCCcccc
Confidence 45665444 555 5788899999877542 22 11100 00235789999999999987554
Q ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEec
Q 007533 377 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 456 (599)
Q Consensus 377 g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~ 456 (599)
.....+..+.++++|+||||+|||+|+.++|++|...+. ...|+ .+++.+.+
T Consensus 59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~~ 110 (184)
T cd01743 59 GISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPE-----------------------PMHGK-----TSEIHHDG 110 (184)
T ss_pred hhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCC-----------------------CCcCc-----eeEEEECC
Confidence 445555555577899999999999999999998853210 12232 23444443
Q ss_pred CCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHH
Q 007533 457 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 536 (599)
Q Consensus 457 ~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pL 536 (599)
. +++..+. ......+.|+|.|++.-. ..++.++|.++++. +++++++++|+ +|+|||||+.+.+. ...|
T Consensus 111 ~-~~~~~~~---~~~~~~~~H~~~v~~~~~----~~~~~~la~~~~~~-v~a~~~~~~~i-~gvQfHPE~~~~~~-g~~l 179 (184)
T cd01743 111 S-GLFKGLP---QPFTVGRYHSLVVDPDPL----PDLLEVTASTEDGV-IMALRHRDLPI-YGVQFHPESILTEY-GLRL 179 (184)
T ss_pred C-ccccCCC---CCcEEEeCcEEEEecCCC----CceEEEEEeCCCCe-EEEEEeCCCCE-EEEeeCCCcCCCcc-hHHH
Confidence 3 4444442 223467889998864321 22488999988885 99999999995 69999999988874 8899
Q ss_pred HHHHH
Q 007533 537 FLGLI 541 (599)
Q Consensus 537 F~~Fv 541 (599)
|++|+
T Consensus 180 ~~~f~ 184 (184)
T cd01743 180 LENFL 184 (184)
T ss_pred HHhhC
Confidence 99994
No 32
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=1.5e-22 Score=197.80 Aligned_cols=183 Identities=17% Similarity=0.262 Sum_probs=120.4
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg~ 375 (599)
|.+|+.|. +|. +++..|+..|+++.+ +...+.+. .+. ..++||||++||||++..
T Consensus 2 il~id~~d----sf~~nl~~~l~~~~~~~~v------~~~~~~~~-------------~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLIDNYD----SFTYNLYQYFCELGTEVMV------KRNDELQL-------------TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEEECCC----chHHHHHHHHHHCCCcEEE------EeCCCCCH-------------HHHHhcCCCeEEEcCCCCChHh
Confidence 77887665 665 688999988887754 22222211 011 237899999999999754
Q ss_pred hH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.+ ....++. .+.++|+||||+|||+|+.++|++|...+. ...|++ ....
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~-----------------------~~~G~~------~~~~ 108 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQ-----------------------VMHGKT------SAIC 108 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCc-----------------------ceecce------EEEE
Confidence 33 3344443 467899999999999999999998854210 112332 2222
Q ss_pred ecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC---eEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 455 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 455 ~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~---~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
...++++..+. .. ....+.|+|.+++.. + +.++.++|+++++. .++++++++.|+ +|+|||||..+.+
T Consensus 109 ~~~~~lf~~l~-~~--~~v~~~Hs~~v~~~~---l-p~~~~vlA~s~~d~~~~~i~~~~~~~~~i-~GvQfHPE~~~~~- 179 (191)
T PRK06774 109 HSGQGVFRGLN-QP--LTVTRYHSLVIAADS---L-PGCFELTAWSERGGEMDEIMGIRHRTLPL-EGVQFHPESILSE- 179 (191)
T ss_pred ecCchhhcCCC-CC--cEEEEeCcceeeccC---C-CCCeEEEEEeCCCCCcceEEEEEeCCCCE-EEEEECCCcCCCc-
Confidence 22223444442 22 345677888876432 3 67899999987542 256677887775 6999999997766
Q ss_pred CchHHHHHHHH
Q 007533 532 KPSPLFLGLIA 542 (599)
Q Consensus 532 ~p~pLF~~Fv~ 542 (599)
.+..+|++|++
T Consensus 180 ~G~~i~~nf~~ 190 (191)
T PRK06774 180 QGHQLLDNFLK 190 (191)
T ss_pred cHHHHHHHHhh
Confidence 57899999985
No 33
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.89 E-value=4.2e-22 Score=198.61 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=133.3
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
++|.+++.|. +|. ++.+.|+..|+++.+. ..+...++ ...+.+.++|||||+||++++.
T Consensus 1 ~~ilv~d~~~----~~~~~~~~~l~~~G~~~~~~----~~~~~~~~------------~~~~~~~~~dgliisGGp~~~~ 60 (214)
T PRK07765 1 MRILVVDNYD----SFVFNLVQYLGQLGVEAEVW----RNDDPRLA------------DEAAVAAQFDGVLLSPGPGTPE 60 (214)
T ss_pred CeEEEEECCC----cHHHHHHHHHHHcCCcEEEE----ECCCcCHH------------HHHHhhcCCCEEEECCCCCChh
Confidence 4788887665 433 5778899999887541 11211111 0113367899999999999875
Q ss_pred h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 375 V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 375 ~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
. ...+..++++.++++|+||||+|||+|+.++|++|.+.+. ...|+ .+++.
T Consensus 61 ~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~-----------------------~~~g~-----~~~v~ 112 (214)
T PRK07765 61 RAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE-----------------------LLHGK-----TSSVH 112 (214)
T ss_pred hcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC-----------------------CccCc-----eeEEE
Confidence 3 3356789999999999999999999999999999854210 11132 23344
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
+... +++..+. .....++.|+|.+.++.+ +.|+.++|+++++. +|+++++++| ++|+|||||..... ++
T Consensus 113 ~~~~-~~~~~~~---~~~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-vqa~~~~~~~-i~gvQfHPE~~~t~-~g 181 (214)
T PRK07765 113 HTGV-GVLAGLP---DPFTATRYHSLTILPETL----PAELEVTARTDSGV-IMAVRHRELP-IHGVQFHPESVLTE-GG 181 (214)
T ss_pred ECCC-ccccCCC---CccEEEecchheEecccC----CCceEEEEEcCCCc-EEEEEeCCCC-EEEEeeCCCcccCc-ch
Confidence 4333 3444442 123457788988865433 67899999998887 9999999999 57999999986443 35
Q ss_pred hHHHHHHHHHHhcchh
Q 007533 534 SPLFLGLIAAACGQLD 549 (599)
Q Consensus 534 ~pLF~~Fv~aa~~~~~ 549 (599)
..++.+|+..| +...
T Consensus 182 ~~~l~~f~~~~-~~~~ 196 (214)
T PRK07765 182 HRMLANWLTVC-GWAP 196 (214)
T ss_pred HHHHHHHHHHh-cccc
Confidence 67888888654 4443
No 34
>PRK00758 GMP synthase subunit A; Validated
Probab=99.89 E-value=4.3e-22 Score=193.16 Aligned_cols=179 Identities=25% Similarity=0.336 Sum_probs=122.2
Q ss_pred EEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCC-CEEEeCCCCCCCch
Q 007533 298 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGV 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~-DGIlVPGGfG~rg~ 375 (599)
|+|++ |.. .| .++.++|+.+|+++.+ ++.+ .. + +.+.++ ||||+|||+....
T Consensus 2 i~iid-~~~---~~~~~i~~~l~~~g~~~~~------~~~~-~~-------~-------~~l~~~~dgivi~Gg~~~~~- 55 (184)
T PRK00758 2 IVVVD-NGG---QYNHLIHRTLRYLGVDAKI------IPNT-TP-------V-------EEIKAFEDGLILSGGPDIER- 55 (184)
T ss_pred EEEEE-CCC---chHHHHHHHHHHcCCcEEE------EECC-CC-------H-------HHHhhcCCEEEECCCCChhh-
Confidence 78885 442 33 4788999999986533 2211 10 1 345666 9999999983221
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 376 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
...+.+++++.++|+||||+|||+|+.++|++|...+. ++. |..++.+.
T Consensus 56 --~~~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~-----------------------~~~------g~~~i~~~ 104 (184)
T PRK00758 56 --AGNCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEY-----------------------GEY------ALVEVEIL 104 (184)
T ss_pred --ccccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCCC-----------------------cee------eeEEEEEc
Confidence 11233455567899999999999999999988853210 112 33445554
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
+.+.++..+. . ....++.|+|.+ ..+ +.+++++|+++++. +|+++++++| ++|+|||||++.++ +...
T Consensus 105 ~~~~l~~~~~-~--~~~~~~~H~~~v-----~~l-~~~~~~la~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ 172 (184)
T PRK00758 105 DEDDILKGLP-P--EIRVWASHADEV-----KEL-PDGFEILARSDICE-VEAMKHKEKP-IYGVQFHPEVAHTE-YGEE 172 (184)
T ss_pred CCChhhhCCC-C--CcEEEeehhhhh-----hhC-CCCCEEEEECCCCC-EEEEEECCCC-EEEEEcCCccCCCc-hHHH
Confidence 4434455432 2 234567787755 344 77899999999887 9999999999 56999999998774 5789
Q ss_pred HHHHHHHHHh
Q 007533 536 LFLGLIAAAC 545 (599)
Q Consensus 536 LF~~Fv~aa~ 545 (599)
||++|++.+.
T Consensus 173 l~~~f~~~~~ 182 (184)
T PRK00758 173 IFKNFLEICG 182 (184)
T ss_pred HHHHHHHHHc
Confidence 9999997654
No 35
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.89 E-value=2.1e-22 Score=194.03 Aligned_cols=181 Identities=20% Similarity=0.201 Sum_probs=122.7
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhH
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 377 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg 377 (599)
|+++ ||+.. .-.++.++|+.+|+.+.+ ...+.. .+ ...+.++||||+|||++....+.
T Consensus 1 i~~i-D~g~~--~~~~~~~~l~~~G~~~~~----~~~~~~-~~--------------~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILIL-DFGSQ--YTHLIARRVRELGVYSEI----LPNTTP-LE--------------EIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEE-ECCCc--hHHHHHHHHHhcCceEEE----ecCCCC-hh--------------hhcccCCCEEEECCCcccccccc
Confidence 5677 46532 124688999999976543 112211 00 02578999999999988654332
Q ss_pred HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecC
Q 007533 378 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 457 (599)
Q Consensus 378 ~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~ 457 (599)
.....++..+.++|+||||+|||+|+.++|++|...+. +++|+ .++.+.++
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~-----------------------~~~G~------~~v~~~~~ 109 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDK-----------------------REYGK------AEIEIDDS 109 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCC-----------------------CcceE------EEEEecCC
Confidence 34456777788999999999999999999988753211 23343 33333333
Q ss_pred CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHH
Q 007533 458 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 537 (599)
Q Consensus 458 ~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF 537 (599)
+.++..+. . .....+.|+|++ ..+ +.++.++|.++++. ++++++++.| ++|+|||||++..+ .+..+|
T Consensus 110 ~~l~~~~~-~--~~~~~~~H~~~v-----~~l-~~~~~~la~~~~~~-i~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ll 177 (181)
T cd01742 110 SPLFEGLP-D--EQTVWMSHGDEV-----VKL-PEGFKVIASSDNCP-VAAIANEEKK-IYGVQFHPEVTHTE-KGKEIL 177 (181)
T ss_pred ChhhcCCC-C--ceEEEcchhhhh-----hhc-CCCcEEEEeCCCCC-EEEEEeCCCc-EEEEEcCCccccCc-ChHHHH
Confidence 23343332 1 234467788765 344 67899999998776 9999999888 56999999999875 678899
Q ss_pred HHHH
Q 007533 538 LGLI 541 (599)
Q Consensus 538 ~~Fv 541 (599)
++|+
T Consensus 178 ~~f~ 181 (181)
T cd01742 178 KNFL 181 (181)
T ss_pred HhhC
Confidence 9984
No 36
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.88 E-value=1.1e-21 Score=192.30 Aligned_cols=185 Identities=18% Similarity=0.270 Sum_probs=123.7
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+|+.|. +|. ++++.|+..|+.+.+ ++..+.+... -...++|+|+++||++++...
T Consensus 2 il~id~~d----sft~~~~~~l~~~g~~~~~------~~~~~~~~~~------------~~~~~~~~iilsgGp~~~~~~ 59 (193)
T PRK08857 2 LLMIDNYD----SFTYNLYQYFCELGAQVKV------VRNDEIDIDG------------IEALNPTHLVISPGPCTPNEA 59 (193)
T ss_pred EEEEECCC----CcHHHHHHHHHHCCCcEEE------EECCCCCHHH------------HhhCCCCEEEEeCCCCChHHC
Confidence 78897776 444 688999999987754 2222111000 012358999999999987543
Q ss_pred H-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 g-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
+ ....++. .+.++|+||||+|||+|+.++|++|...+. ...|++ .++...
T Consensus 60 ~~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~-----------------------~~~G~~-----~~~~~~ 110 (193)
T PRK08857 60 GISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQ-----------------------VMHGKT-----SPIRHT 110 (193)
T ss_pred cchHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCC-----------------------ceeCce-----EEEEEC
Confidence 2 3455554 467899999999999999999998854221 112331 223222
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeC--CCC--eEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE--TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~--dg~--~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
.. +++..+. .. ....+.|++.+.+. .+ +.+++++|+++ ++. .+++++++++|+ +|+|||||....+
T Consensus 111 ~~-~l~~~~~-~~--~~v~~~H~~~v~~~---~l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~pi-~gvQfHPE~~~t~- 180 (193)
T PRK08857 111 GR-SVFKGLN-NP--LTVTRYHSLVVKND---TL-PECFELTAWTELEDGSMDEIMGFQHKTLPI-EAVQFHPESIKTE- 180 (193)
T ss_pred CC-cccccCC-Cc--cEEEEccEEEEEcC---CC-CCCeEEEEEecCcCCCcceEEEEEeCCCCE-EEEeeCCCcCCCc-
Confidence 22 3444442 22 34567788888533 23 67899999886 432 489999999996 5999999998665
Q ss_pred CchHHHHHHHHH
Q 007533 532 KPSPLFLGLIAA 543 (599)
Q Consensus 532 ~p~pLF~~Fv~a 543 (599)
.+..+|++|++.
T Consensus 181 ~g~~i~~nFl~~ 192 (193)
T PRK08857 181 QGHQLLANFLAR 192 (193)
T ss_pred chHHHHHHHHhh
Confidence 489999999863
No 37
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.87 E-value=9.6e-22 Score=196.69 Aligned_cols=195 Identities=22% Similarity=0.340 Sum_probs=133.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHH-HcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~-haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+||||+ .|... ..-.++.+||+ .+|+++.. .|... ..+.++|+|++|||++...
T Consensus 1 ~~v~Vl-~~~G~-n~~~d~~~a~~~~~G~~~~~----v~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPGS-NCDRDMARALRDLLGAEPEY----VWHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCCc-ChHHHHHHHHHhcCCCeEEE----EecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 479999 56543 24577899999 88876532 23321 1367899999999975311
Q ss_pred ---------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCC
Q 007533 375 ---------VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 443 (599)
Q Consensus 375 ---------~eg~i~aik~are~~iP~LGICLGmQll~ie--fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Gg 443 (599)
....+..++.+.++++|++|||.|+|+|+.+ +.+.+. ...+.+|
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~---~n~~~~~---------------------- 110 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALT---RNASLKF---------------------- 110 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEE---EcCCCcE----------------------
Confidence 1445677888888999999999999999753 222111 0001111
Q ss_pred ccccCceeeEEecCCchhhhccC-Cce-eE-EeeeeeeeeeCchhhhhhccCCeE---EEEEeCCCCeEEEEEeCC-CCe
Q 007533 444 TMRLGSRRTYFQIKDCKSAKLYG-NRT-FI-DERHRHRYEVNPDMIARLENAGLS---FTGKDETSQRMEIVELPN-HPY 516 (599)
Q Consensus 444 tmrLG~~~v~l~~~~s~l~~iyg-~~~-~I-~erHrHrYeVnp~~v~~le~~Gl~---~sa~s~dg~~vE~iE~~~-hpf 516 (599)
.-....+.+.+..+.+.+.++ +.. .+ ...|+|||++|+++++.+++.|+. +++.+++|...++.++.+ ++|
T Consensus 111 --~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~ 188 (219)
T PRK03619 111 --ICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGN 188 (219)
T ss_pred --EEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCC
Confidence 001122333332244444442 222 12 478999999999999999999988 444558998788889988 899
Q ss_pred EEEEcccCCCcCCC----CCchHHHHHHHH
Q 007533 517 FIGVQFHPEYKSRP----GKPSPLFLGLIA 542 (599)
Q Consensus 517 fvGvQFHPE~ss~p----~~p~pLF~~Fv~ 542 (599)
++|+|||||+.++| .+++++|.+|++
T Consensus 189 ~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 189 VLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred EEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 99999999999998 789999999986
No 38
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.87 E-value=1.9e-21 Score=224.21 Aligned_cols=199 Identities=20% Similarity=0.292 Sum_probs=137.8
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
..++|++|+.|. +|. +++..|+.. |..+. +.++..+..+.+ .+..+..+|||||+||||
T Consensus 4 ~~~~iL~ID~~D----Sft~nl~~~l~~~~g~~~~----v~vv~~d~~~~~-----------~~~~l~~~D~VVIspGPG 64 (742)
T TIGR01823 4 QRLHVLFIDSYD----SFTYNVVRLLEQQTDISVH----VTTVHSDTFQDQ-----------LLELLPLFDAIVVGPGPG 64 (742)
T ss_pred CCceEEEEeCCc----chHHHHHHHHHHhcCCCcE----EEEEeCCCCchh-----------hhhhhcCCCEEEECCCCC
Confidence 467999997665 665 788888876 33332 233444333210 123467899999999999
Q ss_pred CCchhHHHHHHHHHHHc----CCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 007533 372 NRGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447 (599)
Q Consensus 372 ~rg~eg~i~aik~are~----~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrL 447 (599)
++..+..+..++.+++. ++|+||||+|||+|+.++|++|...+. ++.|+
T Consensus 65 ~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~-----------------------~~hG~---- 117 (742)
T TIGR01823 65 NPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-----------------------PKHGQ---- 117 (742)
T ss_pred CccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCC-----------------------CCcCe----
Confidence 99776666677777765 499999999999999999998843221 12233
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.+.+..... .++..++. ....+.|+|.++++..+.+ .+.+++.+.++..+|+++++++|+| |||||||..
T Consensus 118 -~~~v~~~~~-~lf~gl~~----~~v~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~pi~-GVQFHPE~~ 187 (742)
T TIGR01823 118 -VYEMHTNDA-AIFCGLFS----VKSTRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKPWF-GVQYHPESC 187 (742)
T ss_pred -EEEEEECCc-cccCCCCC----CceeEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCceE-EEEeCcccC
Confidence 123333222 34444442 2345679999876554322 2567777776666999999999975 999999998
Q ss_pred CCCCCchHHHHHHHHHHhcch
Q 007533 528 SRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~~~~ 548 (599)
.++....+||.+|++++....
T Consensus 188 ~s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 188 CSELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred CCCccHHHHHHHHHHHHHHhh
Confidence 888766999999999987654
No 39
>PLN02347 GMP synthetase
Probab=99.87 E-value=2.9e-21 Score=215.35 Aligned_cols=191 Identities=20% Similarity=0.263 Sum_probs=134.1
Q ss_pred EEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCCCEEEeCCCCCCC
Q 007533 297 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 373 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlVPGGfG~r 373 (599)
+|+++ ||++ .|. ++.++|+..|+.+.+. .|-. +. +.+ .++||||+|||+++.
T Consensus 12 ~IlII-D~G~---~~t~~I~r~lrelgv~~~v~---p~~~--~~----------------~~i~~~~~dgIILsGGP~sv 66 (536)
T PLN02347 12 VVLIL-DYGS---QYTHLITRRVRELGVYSLLL---SGTA--SL----------------DRIASLNPRVVILSGGPHSV 66 (536)
T ss_pred EEEEE-ECCC---cHHHHHHHHHHHCCCeEEEE---ECCC--CH----------------HHHhcCCCCEEEECCCCCcc
Confidence 69999 5874 454 8999999999876441 1211 11 222 278999999999765
Q ss_pred chhH----HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCc
Q 007533 374 GVQG----KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 449 (599)
Q Consensus 374 g~eg----~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~ 449 (599)
...+ ....++++.+.++|+||||+|||+|+.++|++|..... ..+| .
T Consensus 67 ~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~-----------------------~e~G------~ 117 (536)
T PLN02347 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEK-----------------------QEYG------R 117 (536)
T ss_pred cccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCC-----------------------cccc------e
Confidence 3211 22456667778999999999999999999998853210 1223 3
Q ss_pred eeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC
Q 007533 450 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 450 ~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~ 529 (599)
.++.+..++.++..+.. ......++.|+|.+. .+ +.|+.++|+++++. ++++++++.|+ +|+|||||++.+
T Consensus 118 ~~v~i~~~~~Lf~~l~~-~~~~~v~~~Hsd~V~-----~l-P~g~~vlA~s~~~~-iaai~~~~~~i-~GvQFHPE~~~t 188 (536)
T PLN02347 118 MEIRVVCGSQLFGDLPS-GETQTVWMSHGDEAV-----KL-PEGFEVVAKSVQGA-VVAIENRERRI-YGLQYHPEVTHS 188 (536)
T ss_pred EEEEEcCCChhhhcCCC-CceEEEEEEEEEEee-----eC-CCCCEEEEEeCCCc-EEEEEECCCCE-EEEEccCCCCcc
Confidence 45555444344444432 212345778888763 23 77999999999887 89999999995 599999999887
Q ss_pred CCCchHHHHHHHHHHhcchhhh
Q 007533 530 PGKPSPLFLGLIAAACGQLDTL 551 (599)
Q Consensus 530 p~~p~pLF~~Fv~aa~~~~~~~ 551 (599)
+ .+..++++|+..++++...|
T Consensus 189 ~-~G~~iL~NFl~~ic~~~~~~ 209 (536)
T PLN02347 189 P-KGMETLRHFLFDVCGVTADW 209 (536)
T ss_pred c-hHHHHHHHHHHHHhCcCCCc
Confidence 6 47889999998887766544
No 40
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.87 E-value=5.2e-22 Score=198.27 Aligned_cols=170 Identities=29% Similarity=0.370 Sum_probs=108.6
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC--------CC---ch------
Q 007533 313 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--------NR---GV------ 375 (599)
Q Consensus 313 SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG--------~r---g~------ 375 (599)
+.+++++.+|+.... + +...+ . ..+.+.++.+||||+|||.- .. ..
T Consensus 28 ~Yv~~i~~aG~~pv~---i-p~~~~---~----------~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~ 90 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVP---I-PYDAD---D----------EELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPE 90 (217)
T ss_dssp HHHHHHHHTT-EEEE---E--SS-----H----------HHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHH
T ss_pred HHHHHHHHcCCEEEE---E-ccCCC---H----------HHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHH
Confidence 679999999987532 2 22211 0 12446789999999999962 11 10
Q ss_pred --hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 376 --QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 376 --eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
.-.+.++++|+++++|+||||+|||+|++++|++.......... + ... ..+. -....|++.
T Consensus 91 rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~-~--------~~~-----~~~~---~~~~~h~v~ 153 (217)
T PF07722_consen 91 RDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPG-F--------PDH-----RQHP---QDFPSHPVR 153 (217)
T ss_dssp HHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS--E--------EEC-----EE-S----TS--EEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcC-c--------ccc-----cccc---cccccccce
Confidence 22567788899999999999999999999999987532111000 0 000 0000 023468888
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCC-eEEEEcccCC
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHP-YFIGVQFHPE 525 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hp-ffvGvQFHPE 525 (599)
+.++ |.++++++ ...+.....|.+.|.+ + ..|++++|+++||. +|+||.++++ |++|||||||
T Consensus 154 i~~~-s~l~~~~~-~~~~~vns~Hhq~v~~-----l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 154 IVPG-SLLAKILG-SEEIEVNSFHHQAVKP-----L-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EETT-STCCCTSH-HCTEEEEEEECEEECC-----H-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS-CC
T ss_pred eccC-chHHHHhC-cCcceeecchhhhhhc-----c-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEeCCC
Confidence 8888 89999996 3333344556666665 4 78999999999997 9999999988 8899999999
No 41
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.86 E-value=9.8e-21 Score=188.15 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=122.6
Q ss_pred EEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh-ccCCCEEEeCCCCCCCc
Q 007533 297 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG 374 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~rg 374 (599)
+|++++.|. ++. +++++|+..|+.+.+. +.+ ... .+. ..++|||||+||||++.
T Consensus 3 ~il~iD~~d----sf~~nl~~~l~~~g~~~~v~------~~~-~~~-------------~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 3 HVVLIDNHD----SFVYNLVDAFAVAGYKCTVF------RNT-VPV-------------EEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred EEEEEECCc----CHHHHHHHHHHHCCCcEEEE------eCC-CCH-------------HHHHhcCCCEEEEeCCCCCHH
Confidence 799996444 444 7999999999887552 211 100 011 24789999999999985
Q ss_pred hhH-HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcc-ccCceee
Q 007533 375 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM-RLGSRRT 452 (599)
Q Consensus 375 ~eg-~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtm-rLG~~~v 452 (599)
..+ +...++.+. .++|+||||+|||+|+.++|++|.... .+... ...+.+ .+.|.+- -++..++
T Consensus 59 d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~----~~~G~---~~~i~~------~~~~~~~~l~~~~~~ 124 (208)
T PRK05637 59 DAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG----PVHGT---TDNMIL------TDAGVQSPVFAGLAT 124 (208)
T ss_pred HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC----cccce---EEEeEE------CCCCCCCcccCCCCc
Confidence 433 345555543 479999999999999999999985311 11000 000000 0111100 0111121
Q ss_pred EEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC--CCeEEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 453 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET--SQRMEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 453 ~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d--g~~vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
...++ ...+.+.+..++.+ |++ .+..+ +.+++++|++++ +..+++++.++.| ++|+|||||...++
T Consensus 125 ~~~~~---~~~~~g~~~~V~~~--H~~-----~v~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T~ 192 (208)
T PRK05637 125 DVEPD---HPEIPGRKVPIARY--HSL-----GCVVA-PDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLSP 192 (208)
T ss_pred ccccc---cccccCCceEEEEe--chh-----hhhcC-CCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcCC
Confidence 11111 11222323344444 444 44455 789999999765 3457889999888 56999999998887
Q ss_pred CCchHHHHHHHHHHhc
Q 007533 531 GKPSPLFLGLIAAACG 546 (599)
Q Consensus 531 ~~p~pLF~~Fv~aa~~ 546 (599)
.+..+|.+|++....
T Consensus 193 -~G~~il~nfl~~~~~ 207 (208)
T PRK05637 193 -TGPIILSRCVEQLLA 207 (208)
T ss_pred -CHHHHHHHHHHHHhc
Confidence 588999999987653
No 42
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=8.3e-21 Score=186.71 Aligned_cols=187 Identities=18% Similarity=0.200 Sum_probs=117.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
|+|+|| ||+.. ++.|+.++|+..|+++.+ +... +.+.++|+||+|| .|....
T Consensus 1 m~i~ii-d~g~g--n~~s~~~~l~~~g~~~~~------v~~~------------------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVII-DTGCA--NLSSVKFAIERLGYEPVV------SRDP------------------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEE-eCCCc--hHHHHHHHHHHCCCeEEE------ECCH------------------HHhCCCCEEEECC-CCchHH
Confidence 589999 68865 788999999999876543 3321 3567899999977 344321
Q ss_pred --hHH--HHHHHHHHHcCCCEEEEehhHHHHHHHhcc----ccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 007533 376 --QGK--ILAAKYAREHRIPYLGICLGMQVAVIEFAR----SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447 (599)
Q Consensus 376 --eg~--i~aik~are~~iP~LGICLGmQll~iefgr----~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrL 447 (599)
... ...++.+++.++|+||||+|||+|+.+++. +.+|+-+.....+.. +....+++||+
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~----------~~~~~p~~G~~--- 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTD----------FGLPLPHMGWN--- 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCC----------CCCCCCccccc---
Confidence 111 123555566689999999999999988743 222222221111110 11245788874
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
++.+.+++.++..+. . ....+|+|+|.+.++ ...++.++.+..+.++ +.+.+ ++|+|||||++
T Consensus 120 ---~v~~~~~~~l~~~l~-~--~~~v~~~Hs~~lp~~---------~~~la~s~~~~~~~~~-~~~~~-i~G~QFHPE~~ 182 (196)
T PRK13170 120 ---QVTPQAGHPLFQGIE-D--GSYFYFVHSYAMPVN---------EYTIAQCNYGEPFSAA-IQKDN-FFGVQFHPERS 182 (196)
T ss_pred ---eeEeCCCChhhhCCC-c--CCEEEEECeeecCCC---------CcEEEEecCCCeEEEE-EEcCC-EEEEECCCCCc
Confidence 444444434555543 2 234578899987542 2366777776643333 34445 67999999998
Q ss_pred CCCCCchHHHHHHHH
Q 007533 528 SRPGKPSPLFLGLIA 542 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~ 542 (599)
. ..+..++.+|++
T Consensus 183 ~--~~G~~~l~nfl~ 195 (196)
T PRK13170 183 G--AAGAQLLKNFLE 195 (196)
T ss_pred c--cccHHHHHHHhh
Confidence 5 358899999975
No 43
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.86 E-value=8e-21 Score=217.63 Aligned_cols=193 Identities=21% Similarity=0.210 Sum_probs=138.4
Q ss_pred CceEEEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
...+|+||+ |+ |++ .++.++|+..|+++.+. .+...+++ -...++|||||+||+|+
T Consensus 515 ~~~~IlVID-~g---ds~~~~l~~~L~~~G~~v~vv---~~~~~~~~----------------~~~~~~DgLILsgGPGs 571 (717)
T TIGR01815 515 EGRRILLVD-HE---DSFVHTLANYLRQTGASVTTL---RHSHAEAA----------------FDERRPDLVVLSPGPGR 571 (717)
T ss_pred CCCEEEEEE-CC---ChhHHHHHHHHHHCCCeEEEE---ECCCChhh----------------hhhcCCCEEEEcCCCCC
Confidence 457999994 65 343 48999999999877441 11111110 12357999999999999
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceee
Q 007533 373 RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 452 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v 452 (599)
+...+....++++.+.++|+||||||||+|+.++|++|..++ .+++|+. .++
T Consensus 572 p~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~-----------------------~p~~G~~-----~~V 623 (717)
T TIGR01815 572 PADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLP-----------------------EPVHGKA-----SRI 623 (717)
T ss_pred chhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECC-----------------------CCeeCcc-----eEE
Confidence 876667788999999999999999999999999999885432 1345642 234
Q ss_pred EEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC-
Q 007533 453 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG- 531 (599)
Q Consensus 453 ~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~- 531 (599)
.+...++++..+. .. ....+.|+|.+.... + +.++.++|.++++. +++++++++|+ +|+|||||...++.
T Consensus 624 ~~~~~~~Lf~~lp-~~--~~v~~~HS~~~~~~~---L-P~~~~vlA~s~d~~-v~Ai~~~~~~i-~GVQFHPEsi~T~sg 694 (717)
T TIGR01815 624 RVLGPDALFAGLP-ER--LTVGRYHSLFARRDR---L-PAELTVTAESADGL-IMAIEHRRLPL-AAVQFHPESIMTLDG 694 (717)
T ss_pred EECCCChhhhcCC-CC--CEEEEECCCCccccc---C-CCCeEEEEEeCCCc-EEEEEECCCCE-EEEEeCCeeCCccCc
Confidence 3333324455543 22 345778888765432 3 67899999998887 99999999995 59999999854432
Q ss_pred -CchHHHHHHHHHHhc
Q 007533 532 -KPSPLFLGLIAAACG 546 (599)
Q Consensus 532 -~p~pLF~~Fv~aa~~ 546 (599)
.+..+|++|+..++.
T Consensus 695 ~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 695 GAGLAMIGNVVDRLAA 710 (717)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 368899999988864
No 44
>PRK13566 anthranilate synthase; Provisional
Probab=99.86 E-value=9.1e-21 Score=217.46 Aligned_cols=193 Identities=18% Similarity=0.204 Sum_probs=138.4
Q ss_pred CCceEEEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 293 HEPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 293 ~~~v~IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
...++|++|+ |. |++ .++.+.|+..|+++.+. .+-.+.++ -...++|||||+||+|
T Consensus 524 ~~g~~IlvID-~~---dsf~~~l~~~Lr~~G~~v~vv---~~~~~~~~----------------~~~~~~DgVVLsgGpg 580 (720)
T PRK13566 524 GEGKRVLLVD-HE---DSFVHTLANYFRQTGAEVTTV---RYGFAEEM----------------LDRVNPDLVVLSPGPG 580 (720)
T ss_pred CCCCEEEEEE-CC---CchHHHHHHHHHHCCCEEEEE---ECCCChhH----------------hhhcCCCEEEECCCCC
Confidence 3567999994 65 344 47899999999887541 11111110 1235799999999999
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 372 NRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 372 ~rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
.+...+....++++.++++|+||||+|||+|+.++|++|..++. ++.|+ .++
T Consensus 581 sp~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~-----------------------~~~G~-----~~~ 632 (720)
T PRK13566 581 RPSDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY-----------------------PMHGK-----PSR 632 (720)
T ss_pred ChhhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCC-----------------------CccCC-----ceE
Confidence 98766778999999999999999999999999999998854321 22232 345
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC--
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR-- 529 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~-- 529 (599)
+.+...+.++..+. . .+...+.|+|.+.... + +.+++++|.++++. ++++++++.|+ +|+|||||+..+
T Consensus 633 V~v~~~~~Lf~~lp-~--~~~v~~~Hs~~v~~~~---L-p~~~~vlA~s~dg~-V~ai~~~~~pi-~GVQFHPE~i~t~~ 703 (720)
T PRK13566 633 IRVRGPGRLFSGLP-E--EFTVGRYHSLFADPET---L-PDELLVTAETEDGV-IMAIEHKTLPV-AAVQFHPESIMTLG 703 (720)
T ss_pred EEECCCCchhhcCC-C--CCEEEEecceeEeecc---C-CCceEEEEEeCCCc-EEEEEECCCCE-EEEeccCeeCCcCC
Confidence 55555433444442 2 2345677887665332 3 67899999998886 99999999995 699999998644
Q ss_pred CCCchHHHHHHHHHHh
Q 007533 530 PGKPSPLFLGLIAAAC 545 (599)
Q Consensus 530 p~~p~pLF~~Fv~aa~ 545 (599)
...+..+|++|++.+.
T Consensus 704 ~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 704 GDVGLRIIENVVRLLA 719 (720)
T ss_pred chhHHHHHHHHHHHhh
Confidence 2347899999998874
No 45
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.85 E-value=1.1e-20 Score=184.81 Aligned_cols=149 Identities=25% Similarity=0.366 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---------------h-
Q 007533 312 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------------V- 375 (599)
Q Consensus 312 ~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg---------------~- 375 (599)
.+++++|+.+|+.+.+ +.+.. +. ..+...+..+||||+|||++... .
T Consensus 22 ~~~~~~l~~~G~~~~i---v~~~~--~~------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVL---LPPVD--DE------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEE---eCCCC--Ch------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 3789999999986533 11211 11 01224568899999999975311 0
Q ss_pred --hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 376 --QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 376 --eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
.....+++++.+.++|+||||+|||+|+.++|++|...
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~---------------------------------------- 124 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQD---------------------------------------- 124 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC----------------------------------------
Confidence 13477889998999999999999999999988776310
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCC-CCC
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR-PGK 532 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~-p~~ 532 (599)
. .++ +.|+++ +..+ +.+++++|.++++. +|++++++|++++|+|||||+... +.+
T Consensus 125 -----~----------~v~--~~H~~~-----v~~~-~~~~~vla~~~d~~-vea~~~~~~~~~~gvQfHPE~~~~~~~~ 180 (189)
T cd01745 125 -----I----------RVN--SLHHQA-----IKRL-ADGLRVEARAPDGV-IEAIESPDRPFVLGVQWHPEWLADTDPD 180 (189)
T ss_pred -----C----------cee--chHHHH-----Hhhc-CCCCEEEEECCCCc-EEEEEeCCCCeEEEEecCCCcCcccCch
Confidence 0 122 335544 4445 78999999988886 999999997778899999999998 778
Q ss_pred chHHHHHHH
Q 007533 533 PSPLFLGLI 541 (599)
Q Consensus 533 p~pLF~~Fv 541 (599)
...+|.+|+
T Consensus 181 ~~~if~~f~ 189 (189)
T cd01745 181 SLKLFEAFV 189 (189)
T ss_pred HhHHHHHhC
Confidence 899999985
No 46
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84 E-value=3.5e-20 Score=184.12 Aligned_cols=196 Identities=21% Similarity=0.227 Sum_probs=120.3
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||+|| +|+.. +..|+.++|+..|+++ ++.|+.+. +.+.++|||||||+.....
T Consensus 2 ~~~~ii-d~g~g--n~~s~~~al~~~g~~~----~v~~~~~~------------------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYGSG--NLRSAAKALERAGAGA----DVVVTADP------------------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECCCC--hHHHHHHHHHHcCCCc----cEEEECCH------------------HHhcCCCEEEECCCCcHHHH
Confidence 689999 69854 6789999999999965 34455431 4578999999999632211
Q ss_pred ---h--hHHHHH-HHHHHHcCCCEEEEehhHHHHHHH---hc-cccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 375 ---V--QGKILA-AKYAREHRIPYLGICLGMQVAVIE---FA-RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 375 ---~--eg~i~a-ik~are~~iP~LGICLGmQll~ie---fg-r~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
. .+.... ++.+.++++|+||||+|||+|+.+ ++ ...+|+-+....++++.. +....+++||+
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~--------~~~~~p~~G~~ 128 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDG--------PALKVPHMGWN 128 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCC--------CCCccCccChH
Confidence 1 122333 444556899999999999999865 11 011111111111110000 01134677874
Q ss_pred cccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccC
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHP 524 (599)
++...+++.++..+. .. ...++.|+|.+.+. + +..+++.+.++..++++... .+ ++|+||||
T Consensus 129 ------~v~~~~~~~lf~~~~-~~--~~v~~~Hs~~v~~~------~-~~~~la~s~~~~~~~a~~~~-~~-i~GvQFHP 190 (209)
T PRK13146 129 ------TVDQTRDHPLFAGIP-DG--ARFYFVHSYYAQPA------N-PADVVAWTDYGGPFTAAVAR-DN-LFATQFHP 190 (209)
T ss_pred ------HeeeCCCChhccCCC-CC--CEEEEEeEEEEEcC------C-CCcEEEEEcCCCEEEEEEec-CC-EEEEEcCC
Confidence 344444434455443 22 34578899988532 1 34677887776556666543 45 67999999
Q ss_pred CCcCCCCCchHHHHHHHHHH
Q 007533 525 EYKSRPGKPSPLFLGLIAAA 544 (599)
Q Consensus 525 E~ss~p~~p~pLF~~Fv~aa 544 (599)
|+++. ....++++|++.+
T Consensus 191 E~s~~--~G~~ll~nfl~~~ 208 (209)
T PRK13146 191 EKSQD--AGLALLRNFLAWL 208 (209)
T ss_pred cccHH--HHHHHHHHHHhhc
Confidence 98743 5788999998763
No 47
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.84 E-value=3.4e-20 Score=184.57 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=119.0
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
++|+|+ +|+.. +..|+.++|+.+|+++.+ ++.. +.+.++|+||+||+ |+..
T Consensus 2 ~~v~ii-d~~~G--N~~sl~~al~~~g~~v~v------v~~~------------------~~l~~~d~iIlPG~-g~~~~ 53 (210)
T CHL00188 2 MKIGII-DYSMG--NLHSVSRAIQQAGQQPCI------INSE------------------SELAQVHALVLPGV-GSFDL 53 (210)
T ss_pred cEEEEE-EcCCc--cHHHHHHHHHHcCCcEEE------EcCH------------------HHhhhCCEEEECCC-CchHH
Confidence 579999 69743 789999999999987644 2211 24567999999883 4422
Q ss_pred -h-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc---cccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcc
Q 007533 375 -V-----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARS---VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM 445 (599)
Q Consensus 375 -~-----eg~i~aik~are~~iP~LGICLGmQll~iefgr~---Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtm 445 (599)
. .+....++.+.++++|+||||+|||+|+..+... .+++-+....++.. -+....+|+||+.
T Consensus 54 ~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~---------~~~~~~p~~Gw~~ 124 (210)
T CHL00188 54 AMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKH---------SPVKVIPHMGWNR 124 (210)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCC---------CCCCccCccCCcc
Confidence 1 2456778888888999999999999997665432 12222222222210 0123578999953
Q ss_pred ccCceeeEEecC------CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEE
Q 007533 446 RLGSRRTYFQIK------DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 519 (599)
Q Consensus 446 rLG~~~v~l~~~------~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvG 519 (599)
- .+..+ ++++..+- . ....++.|+|.+.|+.. .-+..++...+...+++++.. + ++|
T Consensus 125 v------~~~~~~~~~~~~~lf~~l~-~--~~~v~~~HS~~v~p~~~-----~~l~~t~~~~~~~~v~a~~~~--~-i~G 187 (210)
T CHL00188 125 L------ECQNSECQNSEWVNWKAWP-L--NPWAYFVHSYGVMPKSQ-----ACATTTTFYGKQQMVAAIEYD--N-IFA 187 (210)
T ss_pred c------eecCCcccccCChhhcCCC-C--CCEEEEeCccEecCCCC-----ceEEEEEecCCcceEEEEecC--C-EEE
Confidence 2 22211 23455543 2 23456779998864321 112333333222348888853 4 679
Q ss_pred EcccCCCcCCCCCchHHHHHHHHH
Q 007533 520 VQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 520 vQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
+|||||+++. .+..++++|+..
T Consensus 188 vQFHPE~s~~--~G~~il~nfl~~ 209 (210)
T CHL00188 188 MQFHPEKSGE--FGLWLLREFMKK 209 (210)
T ss_pred EecCCccccH--hHHHHHHHHHhh
Confidence 9999999843 478899999864
No 48
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.84 E-value=2.6e-20 Score=207.21 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=130.5
Q ss_pred EEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc--CCCEEEeCCCCCCC
Q 007533 297 RIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNR 373 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlVPGGfG~r 373 (599)
+|+|+ ||++ .|. ++.++|+.+|+.+.+ .+.+.. . +.+. ++||||+|||+.+.
T Consensus 5 ~i~vl-D~Gs---q~~~li~r~lrelg~~~~v----~p~~~~-~----------------~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 5 KILIL-DFGS---QYTQLIARRVRELGVYSEI----VPYDIS-A----------------EEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred EEEEE-ECCC---CcHHHHHHHHHHCCCeEEE----EECCCC-H----------------HHHhccCCCEEEECCCCccc
Confidence 69999 6874 454 789999999987644 222211 1 2233 56999999998764
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeE
Q 007533 374 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 453 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~ 453 (599)
-.++.....+.+.+.++|+||||+|||+|+.++|++|.... . .+ +|.+++.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~---~--------------------~e------~G~~~i~ 110 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAG---K--------------------RE------YGRAELE 110 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecC---C--------------------cc------cceEEEE
Confidence 32232334456677899999999999999999999884311 0 12 2344555
Q ss_pred EecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCc
Q 007533 454 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 533 (599)
Q Consensus 454 l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p 533 (599)
+.+++.++..+ +.. ...++.|++.| ..+ +.|++++|.++++. ++++++.+.| ++|+|||||++.++ .+
T Consensus 111 i~~~~~Lf~~l-~~~--~~v~~~H~d~V-----~~l-p~g~~vlA~s~~~~-v~ai~~~~~~-i~GvQFHPE~~~t~-~G 178 (511)
T PRK00074 111 VDNDSPLFKGL-PEE--QDVWMSHGDKV-----TEL-PEGFKVIASTENCP-IAAIANEERK-FYGVQFHPEVTHTP-QG 178 (511)
T ss_pred EcCCChhhhcC-CCc--eEEEEECCeEE-----Eec-CCCcEEEEEeCCCC-EEEEEeCCCC-EEEEeCCCCcCCch-hH
Confidence 55542344443 223 33456677765 334 78999999998876 9999999888 56999999999876 47
Q ss_pred hHHHHHHHHHHhcchhhh
Q 007533 534 SPLFLGLIAAACGQLDTL 551 (599)
Q Consensus 534 ~pLF~~Fv~aa~~~~~~~ 551 (599)
..+|++|+...+++...|
T Consensus 179 ~~il~nFl~~i~~~~~~~ 196 (511)
T PRK00074 179 KKLLENFVFDICGCKGDW 196 (511)
T ss_pred HHHHHHHHHHhcCCCCCc
Confidence 899999997776655444
No 49
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.83 E-value=7.3e-20 Score=204.69 Aligned_cols=188 Identities=17% Similarity=0.236 Sum_probs=126.9
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
|.+|+.|. +|. ++++.|+..|... + .++.+.+.+. .++ ...++||||++||||++...
T Consensus 2 il~idn~d----sft~nl~~~l~~~g~~~-v----~~~~~~~~~~----------~~~--~~~~~d~vIlsgGP~~p~~~ 60 (534)
T PRK14607 2 IILIDNYD----SFTYNIYQYIGELGPEE-I----EVVRNDEITI----------EEI--EALNPSHIVISPGPGRPEEA 60 (534)
T ss_pred EEEEECch----hHHHHHHHHHHHcCCCe-E----EEECCCCCCH----------HHH--HhcCCCEEEECCCCCChhhC
Confidence 78887766 555 7999999998751 1 1232322211 001 12368999999999986432
Q ss_pred -HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEe
Q 007533 377 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 455 (599)
Q Consensus 377 -g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~ 455 (599)
..+..+++ .+.++|+||||+|||+|+.++|++|..... .+.|+ .+++...
T Consensus 61 ~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~-----------------------~~~G~-----~~~v~~~ 111 (534)
T PRK14607 61 GISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKR-----------------------ILHGK-----TSPIDHN 111 (534)
T ss_pred CccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCc-----------------------cccCC-----ceeEEEC
Confidence 23455665 367899999999999999999998854321 11233 1233332
Q ss_pred cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchH
Q 007533 456 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 535 (599)
Q Consensus 456 ~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~p 535 (599)
.. +++..+. .. +...++|+|.+.... + +.+++++|+++++. +|+++++++|+ +|+|||||.... .+...
T Consensus 112 ~~-~lf~~~~-~~--~~v~~~Hs~~v~~~~---l-p~~~~vlA~s~d~~-i~a~~~~~~pi-~GvQFHPE~~~t-~~g~~ 180 (534)
T PRK14607 112 GK-GLFRGIP-NP--TVATRYHSLVVEEAS---L-PECLEVTAKSDDGE-IMGIRHKEHPI-FGVQFHPESILT-EEGKR 180 (534)
T ss_pred CC-cchhcCC-CC--cEEeeccchheeccc---C-CCCeEEEEEcCCCC-EEEEEECCCCE-EEEEeCCCCCCC-hhHHH
Confidence 22 3443332 12 334677888875422 3 67899999998887 99999999995 699999997654 46789
Q ss_pred HHHHHHHHHhc
Q 007533 536 LFLGLIAAACG 546 (599)
Q Consensus 536 LF~~Fv~aa~~ 546 (599)
+|.+|+..+..
T Consensus 181 i~~nFl~~~~~ 191 (534)
T PRK14607 181 ILKNFLNYQRE 191 (534)
T ss_pred HHHHHHHHhhc
Confidence 99999998754
No 50
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.82 E-value=2.8e-19 Score=178.06 Aligned_cols=186 Identities=20% Similarity=0.235 Sum_probs=120.6
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|+|+ ||+.. +-.|+.+||+..+.+.. |+... +.+.++|+||+||+ |+...
T Consensus 2 i~ii-dyg~g--Nl~s~~~al~~~~~~~~------~~~~~------------------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAIL-DYGMG--NIHSCLKAVSLYTKDFV------FTSDP------------------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEE-ECCCc--hHHHHHHHHHHcCCeEE------EECCH------------------HHhccCCEEEECCC-CchHHHH
Confidence 8899 79866 78999999999987542 34321 45789999999997 43221
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc----------ccccccCCCccccCCCCCCCeeeeCCC--CCc
Q 007533 376 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR----------SVLNLRDANSTEFDPNTKNPCVIFMPE--GSK 438 (599)
Q Consensus 376 -----eg~i~aik~are~~iP~LGICLGmQll~iefgr----------~Vlgl~dA~S~Ef~~~~~~~vi~~mpe--~~~ 438 (599)
.+....++.+.+.++|+||||+|||+|+.++.. +-||+-++...+ ||. ...
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~------------~~~~~~~~ 121 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKK------------FEGKDFKV 121 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEE------------cCCCCCcC
Confidence 256777777778899999999999999876642 123332322222 232 246
Q ss_pred CcCCCccccCceeeEEe--cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC-CCeEEEEEeCCCC
Q 007533 439 THMGGTMRLGSRRTYFQ--IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEIVELPNHP 515 (599)
Q Consensus 439 ~~~GgtmrLG~~~v~l~--~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d-g~~vE~iE~~~hp 515 (599)
+|+||+. +.+. ..++++..+- . ....+|.|+|..++. .-+..++.+++ +..+.++. .+.+
T Consensus 122 ph~Gw~~------v~~~~~~~~~lf~~l~-~--~~~v~~~HS~~~~~~-------~~l~~sa~~~~~g~~~~a~~-~~~~ 184 (210)
T PRK14004 122 PHIGWNR------LQIRRKDKSKLLKGIG-D--QSFFYFIHSYRPTGA-------EGNAITGLCDYYQEKFPAVV-EKEN 184 (210)
T ss_pred CccCccc------ceeccCCCCccccCCC-C--CCEEEEeceeecCCC-------CcceEEEeeeECCEEEEEEE-ecCC
Confidence 8999962 2222 1223444443 1 234678899854321 12445666655 55444555 4555
Q ss_pred eEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 516 YFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 516 ffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
++|+|||||++. + .+..++++|++.
T Consensus 185 -i~GvQFHPE~s~-~-~G~~iL~nfl~~ 209 (210)
T PRK14004 185 -IFGTQFHPEKSH-T-HGLKLLENFIEF 209 (210)
T ss_pred -EEEEeCCcccCc-h-hHHHHHHHHHhh
Confidence 569999999887 4 688999999863
No 51
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.82 E-value=3.8e-19 Score=175.50 Aligned_cols=194 Identities=20% Similarity=0.228 Sum_probs=120.0
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc--
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-- 374 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg-- 374 (599)
+|+++ +|+.. .-.++.++|+..|+++.+ +.. + +.+.++||||+|||.....
T Consensus 1 ~i~~~-d~~~~--~~~~i~~~l~~~G~~v~~------~~~-----------~-------~~l~~~d~iiipG~~~~~~~~ 53 (205)
T PRK13141 1 MIAII-DYGMG--NLRSVEKALERLGAEAVI------TSD-----------P-------EEILAADGVILPGVGAFPDAM 53 (205)
T ss_pred CEEEE-EcCCc--hHHHHHHHHHHCCCeEEE------ECC-----------H-------HHhccCCEEEECCCCchHHHH
Confidence 37888 68743 347899999999987654 211 1 3567899999998632111
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc--cc--ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR--SV--LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~iefgr--~V--lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
..+....++.+.++++|+||||+|||+|+.++.. .+ +|+-++. +...+. +.-++...
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~------------v~~~~~---~~~~~~~~ 118 (205)
T PRK13141 54 ANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGR------------VRRFPP---EEGLKVPH 118 (205)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEE------------EEEcCC---CCCCcccE
Confidence 1245677888888999999999999999876311 11 1111110 111110 00001122
Q ss_pred cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCC
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 526 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ 526 (599)
.|.+++.+.+++.+++.+. ....+ .+.|++.+.+ +.++.+++.++++..++++.. +.+ ++|+|||||+
T Consensus 119 ~g~~~i~~~~~~~l~~~l~-~~~~v--~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~-i~GvQfHPE~ 186 (205)
T PRK13141 119 MGWNQLELKKESPLLKGIP-DGAYV--YFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDN-VFGAQFHPEK 186 (205)
T ss_pred ecCccceeCCCChhhhCCC-CCCEE--EEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCC-EEEEeCCCcc
Confidence 3445566555534444442 22233 4568888742 456788888877755777765 345 6799999999
Q ss_pred cCCCCCchHHHHHHHHHHhc
Q 007533 527 KSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 527 ss~p~~p~pLF~~Fv~aa~~ 546 (599)
... ....+|++|+++|.+
T Consensus 187 ~~~--~g~~l~~~fl~~~~~ 204 (205)
T PRK13141 187 SGD--VGLKILKNFVEMVEE 204 (205)
T ss_pred chH--HHHHHHHHHHHHhhc
Confidence 753 578999999998754
No 52
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.81 E-value=1.7e-19 Score=177.14 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=108.7
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-ch-
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GV- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-g~- 375 (599)
|+|+ ||+.. +..|+.+||++.|+++. |+... +.+.++|+||+||+--.. ..
T Consensus 2 i~ii-dyg~g--N~~s~~~al~~~g~~~~------~v~~~------------------~~l~~~D~lIlPG~g~~~~~~~ 54 (192)
T PRK13142 2 IVIV-DYGLG--NISNVKRAIEHLGYEVV------VSNTS------------------KIIDQAETIILPGVGHFKDAMS 54 (192)
T ss_pred EEEE-EcCCc--cHHHHHHHHHHcCCCEE------EEeCH------------------HHhccCCEEEECCCCCHHHHHH
Confidence 8899 79855 88999999999887653 34321 457789999999962211 11
Q ss_pred ----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--c-cccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 007533 376 ----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--A-RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 448 (599)
Q Consensus 376 ----eg~i~aik~are~~iP~LGICLGmQll~ief--g-r~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG 448 (599)
.++..+++. ..++|+||||+|||+|+-.. + .+-+|+-+.....| -++.+++||||+..-
T Consensus 55 ~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf-----------~~~~~vph~GWn~~~- 120 (192)
T PRK13142 55 EIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRI-----------QTEYPVPHLGWNNLV- 120 (192)
T ss_pred HHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEEC-----------CCCCCCCcccccccC-
Confidence 234555655 46899999999999997654 1 12344433322222 122357899996321
Q ss_pred ceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC-eEEEEEeCCCCeEEEEcccCCCc
Q 007533 449 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 449 ~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~-~vE~iE~~~hpffvGvQFHPE~s 527 (599)
...+ ++. -+.++.|+|.+.. ... +.+.+..|. .+-+++. .+ ++|+|||||++
T Consensus 121 -------~~~~----l~~----~~~yFVhSy~v~~-------~~~--v~~~~~yg~~~~~~v~~--~n-~~g~QFHPEkS 173 (192)
T PRK13142 121 -------SKHP----MLN----QDVYFVHSYQAPM-------SEN--VIAYAQYGADIPAIVQF--NN-YIGIQFHPEKS 173 (192)
T ss_pred -------CCCc----ccc----cEEEEECCCeECC-------CCC--EEEEEECCCeEEEEEEc--CC-EEEEecCcccC
Confidence 0111 121 2457889998821 112 334444443 2344432 23 67999999998
Q ss_pred CCCCCchHHHHHHHH
Q 007533 528 SRPGKPSPLFLGLIA 542 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~ 542 (599)
... +..++++|++
T Consensus 174 ~~~--G~~ll~nf~~ 186 (192)
T PRK13142 174 GTY--GLQILRQAIQ 186 (192)
T ss_pred cHh--HHHHHHHHHh
Confidence 754 7889999965
No 53
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.80 E-value=1e-18 Score=203.05 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=128.3
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCCCCccccCCchhhhHHHH---hccCCCEEEeCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK---LLKGADGILVPG 368 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~---~L~~~DGIlVPG 368 (599)
..|+|.+|+.|. +|. +++..|+.. |..+.+ +..++++ +.++.. .+..+|||||+|
T Consensus 80 ~~~~iLlIDnyD----SfTyNL~~~L~~~~g~~~~V------v~nd~~~----------~~~~~~~~~~~~~~d~IVlSP 139 (918)
T PLN02889 80 EFVRTLLIDNYD----SYTYNIYQELSIVNGVPPVV------VRNDEWT----------WEEVYHYLYEEKAFDNIVISP 139 (918)
T ss_pred ccceEEEEeCCC----chHHHHHHHHHHhcCCCEEE------EeCCCCC----------HHHHHhhhhcccCCCEEEECC
Confidence 358999999887 444 688888887 776543 2222221 111111 246889999999
Q ss_pred CCCCCchh---HH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 369 GFGNRGVQ---GK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 369 GfG~rg~e---g~-i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
|||++... |. +..++.+ .++|+||||||||+|+.+||++|...+. +..|.+
T Consensus 140 GPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~-----------------------~~HG~~ 194 (918)
T PLN02889 140 GPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPE-----------------------PVHGRL 194 (918)
T ss_pred CCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCC-----------------------ceeeee
Confidence 99998532 21 2333322 4799999999999999999999865331 111321
Q ss_pred cccCceeeEEecCCchhhhccCC---ceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCC-------------------
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGN---RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET------------------- 502 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~---~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~d------------------- 502 (599)
..+.. .+..++..+... ...+ .|+ |+..|.+..+ +.+++++|++.+
T Consensus 195 -----s~I~h-~~~~lF~glp~~~~~~f~v-~RY-HSL~v~~~~l----P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~ 262 (918)
T PLN02889 195 -----SEIEH-NGCRLFDDIPSGRNSGFKV-VRY-HSLVIDAESL----PKELVPIAWTSSSDTLSFLESQKSGLVPDAY 262 (918)
T ss_pred -----eeEee-cCchhhcCCCcCCCCCceE-EeC-CCcccccCCC----CCceEEEEEECCCcccccccccccccccccc
Confidence 11221 222345555321 1223 344 8888765433 567888887654
Q ss_pred ---------------------------------CCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 503 ---------------------------------SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 503 ---------------------------------g~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
+..+++++|+..|+ +|||||||....+ .+..||.+|++++..+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~-~GVQfHPESi~t~-~G~~l~~nF~~~~~~~~ 339 (918)
T PLN02889 263 ESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPH-YGLQFHPESIATC-YGRQIFKNFREITQDYW 339 (918)
T ss_pred cccccccccccccccccccccccccccccccCCCCeeEEEEECCCce-EEEEeCCccccCc-hhHHHHHHHHHHHHHHh
Confidence 13599999999996 5999999998886 47899999999987553
No 54
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.80 E-value=2.4e-18 Score=169.62 Aligned_cols=194 Identities=20% Similarity=0.233 Sum_probs=118.4
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC--
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-- 373 (599)
+||+|+ +|+.. .-.++.++|+.+|+++.+ +.. + ..++++|||++|||....
T Consensus 1 ~~~~v~-~~~~~--~~~~~~~~l~~~G~~~~~------~~~-----------~-------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYGVG--NLRSVSKALERAGAEVVI------TSD-----------P-------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECCCc--cHHHHHHHHHHCCCeEEE------ECC-----------H-------HHHccCCEEEECCCCCHHHH
Confidence 578999 68743 447999999999987643 111 0 346789999999853321
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 374 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 374 --g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
..+.....++.+.++++|+||||+|||+|+.++... -..+.+. -+ ...+....+.....+ .|.++
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g-~~~~~lg--~~----~g~v~~~~~~~~~~~------~g~~~ 120 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEG-GGVRGLG--LF----PGRVVRFPAGVKVPH------MGWNT 120 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccC-CCCCCcc--ee----eEEEEEcCCCCCCCe------ecceE
Confidence 224567788889999999999999999998754210 0000000 00 000000000001122 34455
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+.+..++.+++.+ . ... ..+.|+|.+.+ ..++.++++++++..+++....+ | ++|+|||||++..
T Consensus 121 v~~~~~~~l~~~l-~-~~~--~~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~~-~-~~gvQfHPE~~~~-- 185 (200)
T PRK13143 121 VKVVKDCPLFEGI-D-GEY--VYFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCND-N-VFGTQFHPEKSGE-- 185 (200)
T ss_pred EEEcCCChhhccC-C-CcE--EEEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEcC-C-EEEEeCCCccchH--
Confidence 5555543344444 2 222 34578887753 34578889888776455555543 5 6799999999742
Q ss_pred CchHHHHHHHHHH
Q 007533 532 KPSPLFLGLIAAA 544 (599)
Q Consensus 532 ~p~pLF~~Fv~aa 544 (599)
....+|++|++.+
T Consensus 186 ~g~~i~~~f~~~~ 198 (200)
T PRK13143 186 TGLKILENFVELI 198 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999876
No 55
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.80 E-value=1.9e-18 Score=170.37 Aligned_cols=185 Identities=22% Similarity=0.197 Sum_probs=111.5
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|++| ||+.. +-.|+.++|+..|+++.+ +... +.+.++|+||+||+. +...
T Consensus 2 i~ii-d~g~~--n~~~v~~~l~~~g~~~~~------~~~~------------------~~l~~~d~lilPG~g-~~~~~~ 53 (201)
T PRK13152 2 IALI-DYKAG--NLNSVAKAFEKIGAINFI------AKNP------------------KDLQKADKLLLPGVG-SFKEAM 53 (201)
T ss_pred EEEE-ECCCC--cHHHHHHHHHHCCCeEEE------ECCH------------------HHHcCCCEEEECCCC-chHHHH
Confidence 8899 69854 668999999999876432 3221 346789999998753 3211
Q ss_pred -----hHHHHH-HHHHHHcCCCEEEEehhHHHHHHH-h-ccccccccCCCccccCCCCCCCeeeeCCC---CCcCcCCCc
Q 007533 376 -----QGKILA-AKYAREHRIPYLGICLGMQVAVIE-F-ARSVLNLRDANSTEFDPNTKNPCVIFMPE---GSKTHMGGT 444 (599)
Q Consensus 376 -----eg~i~a-ik~are~~iP~LGICLGmQll~ie-f-gr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe---~~~~~~Ggt 444 (599)
.+.... .+++.+.++|+||||+|||+|+.+ . ++.+-++. .+ +..+. .++. ...+|+||
T Consensus 54 ~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg-----~~----~g~v~-~~~~~~~~~~~~~g~- 122 (201)
T PRK13152 54 KNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLG-----FI----EGEVV-KFEEDLNLKIPHMGW- 122 (201)
T ss_pred HHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcc-----cc----cEEEE-ECCCCCCCcCCccCe-
Confidence 122333 444567899999999999999875 1 22111110 01 01111 1111 12356665
Q ss_pred cccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC-eEEEEEeCCCCeEEEEccc
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFH 523 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~-~vE~iE~~~hpffvGvQFH 523 (599)
+++.+.+++.++..+ +. .....+.|+|.+... ...+++.++++. .+++++ +.+ ++|+|||
T Consensus 123 -----~~v~~~~~~~l~~~l-~~--~~~~~~vHS~~v~~~--------~~~v~a~~~~g~~~~~a~~--~~~-i~GvQFH 183 (201)
T PRK13152 123 -----NELEILKQSPLYQGI-PE--KSDFYFVHSFYVKCK--------DEFVSAKAQYGHKFVASLQ--KDN-IFATQFH 183 (201)
T ss_pred -----EEEEECCCChhhhCC-CC--CCeEEEEcccEeecC--------CCcEEEEECCCCEEEEEEe--cCC-EEEEeCC
Confidence 456655553344443 22 234578899988531 134677777764 244555 334 7899999
Q ss_pred CCCcCCCCCchHHHHHHHH
Q 007533 524 PEYKSRPGKPSPLFLGLIA 542 (599)
Q Consensus 524 PE~ss~p~~p~pLF~~Fv~ 542 (599)
||++.. ....||++|++
T Consensus 184 PE~~~~--~g~~ll~~Fl~ 200 (201)
T PRK13152 184 PEKSQN--LGLKLLENFAR 200 (201)
T ss_pred CeecCh--hhHHHHHHHHh
Confidence 999853 46889999975
No 56
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.79 E-value=1.7e-18 Score=193.35 Aligned_cols=187 Identities=18% Similarity=0.172 Sum_probs=121.6
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlVPGGfG~ 372 (599)
.+|.+|+.|. +|. .+.+.|+..|+++.+. .+..+.+. ..+.+ .++|+||++||||+
T Consensus 2 ~~iLiIDn~d----sft~nl~~~lr~~g~~v~V~---~~~~~~~~--------------~~~~l~~~~~~~IIlSpGPg~ 60 (531)
T PRK09522 2 ADILLLDNID----SFTYNLADQLRSNGHNVVIY---RNHIPAQT--------------LIERLATMSNPVLMLSPGPGV 60 (531)
T ss_pred CeEEEEeCCC----hHHHHHHHHHHHCCCCEEEE---ECCCCCcc--------------CHHHHHhcCcCEEEEcCCCCC
Confidence 4799997665 555 5888898888766442 11111000 01222 35789999999999
Q ss_pred CchhHHH-HHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 007533 373 RGVQGKI-LAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 451 (599)
Q Consensus 373 rg~eg~i-~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~ 451 (599)
+...+.. ..+++. ..++|+||||+|||+|+.+||++|...+. ...|.+ ..
T Consensus 61 p~d~~~~~~i~~~~-~~~iPILGIClG~QlLa~a~GG~V~~~~~-----------------------~~~G~~-----~~ 111 (531)
T PRK09522 61 PSEAGCMPELLTRL-RGKLPIIGICLGHQAIVEAYGGYVGQAGE-----------------------ILHGKA-----SS 111 (531)
T ss_pred hhhCCCCHHHHHHH-hcCCCEEEEcHHHHHHHHhcCCEEEeCCc-----------------------eeeeeE-----EE
Confidence 8643322 333332 35899999999999999999999853110 011211 11
Q ss_pred eEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 452 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 452 v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+.. .+.+++..+. ....+ .+.|++.+. .+ +.+++++|. .++. ++++++++.|+ +|+|||||...++
T Consensus 112 i~~-~~~~lf~~~~-~~~~v--~~~Hs~~v~-----~l-P~~l~vlA~-sd~~-v~ai~~~~~~i-~GVQFHPEs~~T~- 177 (531)
T PRK09522 112 IEH-DGQAMFAGLT-NPLPV--ARYHSLVGS-----NI-PAGLTINAH-FNGM-VMAVRHDADRV-CGFQFHPESILTT- 177 (531)
T ss_pred Eee-cCCccccCCC-CCcEE--EEehheecc-----cC-CCCcEEEEe-cCCC-EEEEEECCCCE-EEEEecCccccCc-
Confidence 111 1113343332 22334 455776653 34 789999997 5666 99999999885 5999999999887
Q ss_pred CchHHHHHHHHHHhc
Q 007533 532 KPSPLFLGLIAAACG 546 (599)
Q Consensus 532 ~p~pLF~~Fv~aa~~ 546 (599)
.+..+|++|++.+..
T Consensus 178 ~G~~il~NFl~~~~~ 192 (531)
T PRK09522 178 QGARLLEQTLAWAQQ 192 (531)
T ss_pred chHHHHHHHHHHHhh
Confidence 688999999988743
No 57
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.79 E-value=1.6e-18 Score=179.03 Aligned_cols=177 Identities=24% Similarity=0.300 Sum_probs=110.2
Q ss_pred hHH--HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc----hhHHHHHHH
Q 007533 310 AYL--SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAK 383 (599)
Q Consensus 310 aY~--SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg----~eg~i~aik 383 (599)
+|. |.+++|+.+|+.+. +.+++++. + .+.+.++.+||||+|||+.+.. ......+++
T Consensus 19 ~yi~~~Yv~~l~~aG~~vv----pi~~~~~~---~----------~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~ 81 (273)
T cd01747 19 SYIAASYVKFLESAGARVV----PIWINESE---E----------YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYN 81 (273)
T ss_pred HHHHHHHHHHHHHCCCeEE----EEEeCCcH---H----------HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHH
Confidence 444 78999999999753 33444321 1 1235689999999999975432 222345567
Q ss_pred HHHHcC-----CCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecC-
Q 007533 384 YAREHR-----IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK- 457 (599)
Q Consensus 384 ~are~~-----iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~- 457 (599)
.|++.+ +|+||||||||+|+.++|+++.-+.. + ...|+ ..++.+.+.
T Consensus 82 ~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~-----~-----------------~~~~~-----~~~l~~t~~~ 134 (273)
T cd01747 82 LALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEA-----T-----------------EATNS-----ALPLNFTEDA 134 (273)
T ss_pred HHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccCC-----C-----------------ccccc-----eEEEEEcccc
Confidence 776654 89999999999999999876421111 1 01121 123333321
Q ss_pred --CchhhhccC-----CceeEEeeeeeeeeeCchhhhh---hccCCeEEEEEeCC--CC-eEEEEEeCCCCeEEEEcccC
Q 007533 458 --DCKSAKLYG-----NRTFIDERHRHRYEVNPDMIAR---LENAGLSFTGKDET--SQ-RMEIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 458 --~s~l~~iyg-----~~~~I~erHrHrYeVnp~~v~~---le~~Gl~~sa~s~d--g~-~vE~iE~~~hpffvGvQFHP 524 (599)
+.++..+-. -......+|+|+|.+.++.... | +..+.+++++.+ |. .++++|++++|+ +|+||||
T Consensus 135 ~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~pi-~gvQFHP 212 (273)
T cd01747 135 LQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYPI-YGVQWHP 212 (273)
T ss_pred ccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCce-EEEecCC
Confidence 112222110 0112246889999998866432 3 355788888755 43 378999999996 5999999
Q ss_pred CCcCCCCC
Q 007533 525 EYKSRPGK 532 (599)
Q Consensus 525 E~ss~p~~ 532 (599)
|++.....
T Consensus 213 Eks~few~ 220 (273)
T cd01747 213 EKNAFEWK 220 (273)
T ss_pred Cccccccc
Confidence 98876554
No 58
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.79 E-value=2.3e-18 Score=169.28 Aligned_cols=184 Identities=24% Similarity=0.253 Sum_probs=113.0
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|+|+ ||+.. ++.|+.++|+..|+++.+ +.. + +.+.++|+||+||| |++..
T Consensus 2 i~vi-d~g~g--n~~~~~~~l~~~g~~v~~------~~~-----------~-------~~l~~~d~lilpG~-g~~~~~~ 53 (199)
T PRK13181 2 IAII-DYGAG--NLRSVANALKRLGVEAVV------SSD-----------P-------EEIAGADKVILPGV-GAFGQAM 53 (199)
T ss_pred EEEE-eCCCC--hHHHHHHHHHHCCCcEEE------EcC-----------h-------HHhccCCEEEECCC-CCHHHHH
Confidence 7888 68865 788999999999977543 211 1 35678999999885 33211
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc---ccccccCCCccccCCCCCCCeeeeCCC--CCcCcCCCcc
Q 007533 376 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR---SVLNLRDANSTEFDPNTKNPCVIFMPE--GSKTHMGGTM 445 (599)
Q Consensus 376 -----eg~i~aik~are~~iP~LGICLGmQll~iefgr---~Vlgl~dA~S~Ef~~~~~~~vi~~mpe--~~~~~~Ggtm 445 (599)
.+....++.+++.++|+||||+|||+|+.++.. +-+|+-++... .+|. ...+++||
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~------------~~~~~~~~~~~~G~-- 119 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVK------------RFRSEPLKVPQMGW-- 119 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEE------------EcCCCCCCCCccCc--
Confidence 245677888888999999999999999887321 01111111111 1111 11245565
Q ss_pred ccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeE-EEEEeCCCCeEEEEcccC
Q 007533 446 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRM-EIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 446 rLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~v-E~iE~~~hpffvGvQFHP 524 (599)
+++.+.+++.+++.+. ... ...+.|+|.+.+. + ...++|.++++..+ ++++ +.+ ++|+||||
T Consensus 120 ----~~v~~~~~~~lf~~l~-~~~--~~~~~Hs~~v~~~------~-~~~~lA~s~~~~~~~~~~~--~~~-i~GvQFHP 182 (199)
T PRK13181 120 ----NSVKPLKESPLFKGIE-EGS--YFYFVHSYYVPCE------D-PEDVLATTEYGVPFCSAVA--KDN-IYAVQFHP 182 (199)
T ss_pred ----cccccCCCChhHcCCC-CCC--EEEEeCeeEeccC------C-cccEEEEEcCCCEEEEEEE--CCC-EEEEECCC
Confidence 3344334423444432 222 3457788887432 1 13467887765532 3333 445 67999999
Q ss_pred CCcCCCCCchHHHHHHHH
Q 007533 525 EYKSRPGKPSPLFLGLIA 542 (599)
Q Consensus 525 E~ss~p~~p~pLF~~Fv~ 542 (599)
|++. .....+|++|++
T Consensus 183 E~~~--~~g~~ll~nfl~ 198 (199)
T PRK13181 183 EKSG--KAGLKLLKNFAE 198 (199)
T ss_pred ccCC--HHHHHHHHHHHh
Confidence 9874 247889999975
No 59
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.79 E-value=1.4e-18 Score=170.44 Aligned_cols=186 Identities=23% Similarity=0.276 Sum_probs=114.4
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|+|+ +|+.. +-.++.++|+.+|+++.+ ++.. +.++++|+|++||| +.+..
T Consensus 1 i~i~-d~g~~--~~~~~~~~l~~~g~~v~v------~~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAII-DYGMG--NLRSVANALERLGAEVII------TSDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEE-eCCCC--hHHHHHHHHHHCCCeEEE------EcCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 5677 68754 566899999999987654 2211 34678999999885 43321
Q ss_pred -----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--ccccccccCCCccccCCCCCCCeeeeCCC---CCcCcCCCcc
Q 007533 376 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMPE---GSKTHMGGTM 445 (599)
Q Consensus 376 -----eg~i~aik~are~~iP~LGICLGmQll~ief--gr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe---~~~~~~Ggtm 445 (599)
.+....++.+.++++|+||||+|||+|+.++ ++.+-++. -++ .. +..++. ...+++|+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg-----~~~----g~-v~~~~~~~~~~~~~~G~-- 120 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLG-----LIP----GK-VVRFPASEGLKVPHMGW-- 120 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCC-----Ccc----eE-EEECCCCCCceEEEecc--
Confidence 2467888888889999999999999998763 11111100 000 00 111111 11234454
Q ss_pred ccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCC
Q 007533 446 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPE 525 (599)
Q Consensus 446 rLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE 525 (599)
+++...+++.++..+.. . ....+.|+|.+.+ ...+.++|.++++..+.++ ..+.+ ++|+|||||
T Consensus 121 ----~~v~~~~~~~lf~~l~~-~--~~v~~~Hs~~v~~-------~~~~~~la~s~~~~~~~~~-~~~~~-i~GvQFHPE 184 (198)
T cd01748 121 ----NQLEITKESPLFKGIPD-G--SYFYFVHSYYAPP-------DDPDYILATTDYGGKFPAA-VEKDN-IFGTQFHPE 184 (198)
T ss_pred ----ceEEECCCChhhhCCCC-C--CeEEEEeEEEEec-------CCcceEEEEecCCCeEEEE-EEcCC-EEEEECCCc
Confidence 44555555345555532 2 3346788888853 2235678877776534443 44556 679999999
Q ss_pred CcCCCCCchHHHHHHH
Q 007533 526 YKSRPGKPSPLFLGLI 541 (599)
Q Consensus 526 ~ss~p~~p~pLF~~Fv 541 (599)
++.. .+..++++|+
T Consensus 185 ~~~~--~g~~~~~nf~ 198 (198)
T cd01748 185 KSGK--AGLKLLKNFL 198 (198)
T ss_pred cccH--hHHHHHHhhC
Confidence 9843 5778888884
No 60
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.78 E-value=2.7e-18 Score=174.53 Aligned_cols=201 Identities=15% Similarity=0.209 Sum_probs=119.5
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||+|+. ++.++.++.++|+++|+++.. +.. | +.+.++|||++||||++.-
T Consensus 2 m~igVLa----~qG~~~e~~~aL~~lG~ev~~------v~~-----------~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLA----LQGSFNEHIAALRRLGVEAVE------VRK-----------P-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEe----CCCchHHHHHHHHHCCCcEEE------eCC-----------H-------HHhccCCEEEeCCCHHHHHH
Confidence 6899995 444889999999999987633 221 1 4678999999999987521
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc------cccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFA------RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~iefg------r~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
..++...++.+.++++|+||||+|||+|+-..- +..+|.-+..... .--..++..+-+..+.+|+||+
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~R--N~~g~qv~sfe~~l~ip~~gwn 131 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHR--NFFGSQINSFETELPVPELAAS 131 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEe--cccCceeEeEEcCCcCCccccc
Confidence 125677888888889999999999999976531 1123332221111 0112233333234567899986
Q ss_pred c-ccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC--eEEEEEeCCCCeEEEEc
Q 007533 445 M-RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ--RMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 445 m-rLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~--~vE~iE~~~hpffvGvQ 521 (599)
. +....+..+... +.+... + . ..+.-|+|.++++... ...++++.|. .+-+++-. .++|+|
T Consensus 132 ~~~~~~~~~vFira-p~i~~~-~--~--~v~~l~sy~~~~~~~~-------~~~a~~~y~~~~~~~aV~qg---nvlatq 195 (248)
T PLN02832 132 EGGPETFRAVFIRA-PAILSV-G--P--GVEVLAEYPLPSEKAL-------YSSSTDAEGRDKVIVAVKQG---NLLATA 195 (248)
T ss_pred cccccccceEEecC-CceEeC-C--C--cEEEEEEecccccccc-------cccccccccCCceEEEEEeC---CEEEEE
Confidence 3 111222333332 122111 1 1 1356688876553211 1122333331 23333322 268999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 522 FHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 522 FHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
||||+++.. .++++|++.+..
T Consensus 196 FHPEls~d~----rih~~Fl~~~~~ 216 (248)
T PLN02832 196 FHPELTADT----RWHSYFVKMVSE 216 (248)
T ss_pred ccCccCCcc----HHHHHHHHHHHH
Confidence 999999876 788889888754
No 61
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.77 E-value=5.9e-18 Score=164.18 Aligned_cols=139 Identities=23% Similarity=0.286 Sum_probs=98.2
Q ss_pred hccCCCEEEeCCCCCCC---c---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCee
Q 007533 357 LLKGADGILVPGGFGNR---G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 430 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r---g---~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi 430 (599)
.+.++||||+|||+.+. . .......++++.++++|+||||+|||+++.++|++|...+.
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~--------------- 107 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPK--------------- 107 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCC---------------
Confidence 57899999999998754 1 25577889999999999999999999999999988753211
Q ss_pred eeCCCCCcCcCCCccccCceeeEEecCCchhhhccCC-ceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEE
Q 007533 431 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN-RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 509 (599)
Q Consensus 431 ~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~-~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~i 509 (599)
| ...|.+++.+.+. .....++.+ ...+...+.|+++|. .+ +.|++++|+++++. ++++
T Consensus 108 -----------~--~~~g~~~v~~~~~-~~~~~l~~~~~~~~~v~~~H~~~v~-----~l-p~~~~~la~~~~~~-v~~~ 166 (188)
T cd01741 108 -----------G--WEIGWFPVTLTEA-GKADPLFAGLPDEFPVFHWHGDTVV-----EL-PPGAVLLASSEACP-NQAF 166 (188)
T ss_pred -----------c--ceeEEEEEEeccc-cccCchhhcCCCcceEEEEeccChh-----hC-CCCCEEeecCCCCC-cceE
Confidence 1 1123456655543 111112211 123445677877664 34 78999999998887 9999
Q ss_pred EeCCCCeEEEEcccCCCcCCCCCchHHHHHHH
Q 007533 510 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLI 541 (599)
Q Consensus 510 E~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv 541 (599)
+.+ ..++|+||||| ..+|++|+
T Consensus 167 ~~~--~~~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 167 RYG--DRALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred Eec--CCEEEEccCch--------HHHHhhhC
Confidence 987 34689999999 56777763
No 62
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.77 E-value=9.9e-18 Score=165.07 Aligned_cols=191 Identities=17% Similarity=0.268 Sum_probs=113.6
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
||||++ -+....+.|. ++.++|+..|..+.+ .++... +.+.++|+|++|||++..
T Consensus 1 ~~i~vl-~~~~~~~e~~~~~~~~l~~~g~~~~~----~~~~~~------------------~~l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 1 MKIGVL-ALQGDVEEHIDALKRALDELGIDGEV----VEVRRP------------------GDLPDCDALIIPGGESTTI 57 (200)
T ss_pred CEEEEE-EECCccHHHHHHHHHHHHhcCCCeEE----EEeCCh------------------HHhccCCEEEECCCcHHHH
Confidence 467766 2333333443 677888888876543 333210 356789999999998764
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc-cccccCCCccccCCCCCCCeeeeCCCC-CcCcCCCcccc
Q 007533 374 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS-VLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRL 447 (599)
Q Consensus 374 ----g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~-Vlgl~dA~S~Ef~~~~~~~vi~~mpe~-~~~~~GgtmrL 447 (599)
...+....++.+.++++|+||||+|||+|+.++++. +.+ .. .+.+-.+|-. .....|+...
T Consensus 58 ~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~---~~---------~~~lG~~~~~v~~~~~g~~~~- 124 (200)
T PRK13527 58 GRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTK---TE---------QPLLGLMDVTVKRNAFGRQRD- 124 (200)
T ss_pred HHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCC---CC---------CceeeeeEEEEeeccccCccc-
Confidence 223467888888889999999999999999998763 211 10 0111111100 0001121100
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.+... .++..+ + ......+.|++.+ ..+ +++++++|.++++ +++++. .+ ++|+|||||++
T Consensus 125 -----~~~~~-~~~~~~-~--~~~~~~~~H~~~v-----~~l-p~~~~~la~~~~~--~~a~~~--~~-~~g~QfHPE~~ 184 (200)
T PRK13527 125 -----SFEAE-IDLSGL-D--GPFHAVFIRAPAI-----TKV-GGDVEVLAKLDDR--IVAVEQ--GN-VLATAFHPELT 184 (200)
T ss_pred -----cEEEe-Eecccc-C--CcceEEEEccccc-----ccc-CCCeEEEEEECCE--EEEEEE--CC-EEEEEeCCCCC
Confidence 00000 111112 1 1223345566554 334 7899999998876 346653 33 78999999987
Q ss_pred CCCCCchHHHHHHHHHHhc
Q 007533 528 SRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~~ 546 (599)
.. ..+|++|++++.+
T Consensus 185 ~~----~~l~~~f~~~~~~ 199 (200)
T PRK13527 185 DD----TRIHEYFLKKVKG 199 (200)
T ss_pred CC----CHHHHHHHHHHhc
Confidence 54 5899999998865
No 63
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.76 E-value=6.4e-18 Score=166.90 Aligned_cols=182 Identities=24% Similarity=0.214 Sum_probs=117.5
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcC-CcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG-~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
+|+|+ ++++. ...-|-+.|+..| ..+.+ |....+.+. ....++|||||+||+.+.-.
T Consensus 3 ~ilIl-d~g~q--~~~li~r~~re~g~v~~e~-----~~~~~~~~~--------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILIL-DFGGQ--YLGLIARRLRELGYVYSEI-----VPYTGDAEE--------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEE-eCCCc--HhHHHHHHHHHcCCceEEE-----EeCCCCccc--------------ccccCCCEEEEcCCCCCCcc
Confidence 68888 56642 3446778888888 44332 111111110 12346699999999965433
Q ss_pred hH-----HHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCce
Q 007533 376 QG-----KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 450 (599)
Q Consensus 376 eg-----~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~ 450 (599)
+. ....|+.+...++|+||||+|||+|+.++|++|..-. ..| +|..
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~---~~E--------------------------~G~~ 111 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGP---KRE--------------------------IGWT 111 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccC---CCc--------------------------cceE
Confidence 33 3444444444455699999999999999999985311 122 3455
Q ss_pred eeEEec-CCchhhhccCCce-eEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 451 RTYFQI-KDCKSAKLYGNRT-FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 451 ~v~l~~-~~s~l~~iyg~~~-~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
++.+.+ ...+++.+.. .. .++..|. +.+.++ +.|++++|.++... ++++++. .+ ++|+|||||++.
T Consensus 112 ~v~~~~~~~~l~~gl~~-~~~~v~~sH~-------D~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~-~~gvQFHpEv~~ 179 (198)
T COG0518 112 PVELTEGDDPLFAGLPD-LFTTVFMSHG-------DTVVEL-PEGAVVLASSETCP-NQAFRYG-KR-AYGVQFHPEVTH 179 (198)
T ss_pred EEEEecCccccccCCcc-ccCccccchh-------CccccC-CCCCEEEecCCCCh-hhheecC-Cc-EEEEeeeeEEeH
Confidence 666653 2124444432 22 2554444 677777 99999999987776 9999998 55 579999999988
Q ss_pred CCCCchHHHHHHHHH
Q 007533 529 RPGKPSPLFLGLIAA 543 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~a 543 (599)
.....++++|...
T Consensus 180 --~~~~~~l~nf~~~ 192 (198)
T COG0518 180 --EYGEALLENFAHE 192 (198)
T ss_pred --HHHHHHHHHhhhh
Confidence 2366788888753
No 64
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.76 E-value=3.6e-17 Score=165.89 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=120.2
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
.+++|.++-.|..- .-.++.+.|+..|.++.+. -...++. .| +.+.++||+||+||+++.
T Consensus 6 ~~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~----~~~~~~~-------~p-------~~l~~~dgvii~Ggp~~~ 65 (239)
T PRK06490 6 DKRPVLIVLHQERS--TPGRVGQLLQERGYPLDIR----RPRLGDP-------LP-------DTLEDHAGAVIFGGPMSA 65 (239)
T ss_pred CCceEEEEecCCCC--CChHHHHHHHHCCCceEEE----eccCCCC-------CC-------CcccccCEEEEECCCCCC
Confidence 46789988666522 3446788898888876542 1111110 11 347789999999998764
Q ss_pred c-----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 007533 374 G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 448 (599)
Q Consensus 374 g-----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG 448 (599)
. +...+..++.+.+.++|+||||+|||+|+.++|++|...+. |+ ...|
T Consensus 66 ~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~--------------------------G~-~e~G 118 (239)
T PRK06490 66 NDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPD--------------------------GR-VEIG 118 (239)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCC--------------------------CC-Cccc
Confidence 2 34456788888899999999999999999999999854211 10 1223
Q ss_pred ceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 449 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 449 ~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
.+++.+.+....+..+ .. ..+|.|++.+ .+ +.|+.++|.++++. ++++++.++ ++|+|||||++
T Consensus 119 ~~~i~~~~~~~~~~~~---~~--~~~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~~--v~g~QfHPE~~- 182 (239)
T PRK06490 119 YYPLRPTEAGRALMHW---PE--MVYHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGDN--AWGLQFHPEVT- 182 (239)
T ss_pred eEEeEECCCcccccCC---CC--EEEEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCCC--EEEEeeCccCC-
Confidence 3455554432222211 11 2456676542 34 78899999998887 999999764 67999999987
Q ss_pred CCCCchHHHHHHHH
Q 007533 529 RPGKPSPLFLGLIA 542 (599)
Q Consensus 529 ~p~~p~pLF~~Fv~ 542 (599)
..++..|+.
T Consensus 183 -----~~~~~~~i~ 191 (239)
T PRK06490 183 -----RAMMHRWVV 191 (239)
T ss_pred -----HHHHHHHHH
Confidence 355666665
No 65
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.76 E-value=2.1e-17 Score=161.88 Aligned_cols=179 Identities=17% Similarity=0.213 Sum_probs=114.1
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
++|+|+.- +.+|.|..++|+.+|+.+.. ++.. +.+.++|||++|||++..-
T Consensus 2 m~~~i~~~----~g~~~~~~~~l~~~g~~~~~------~~~~------------------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLAL----QGAVREHLAALEALGAEAVE------VRRP------------------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEc----ccCHHHHHHHHHHCCCEEEE------eCCh------------------hHhccCCEEEECCCChHHHH
Confidence 57888842 33788989999999987643 2210 3577899999999986531
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc---ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV---LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 447 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V---lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrL 447 (599)
......+++.+.++++|+||||+|+|+|+.++++.. +|+-++.. .. ...|+. .
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v------------~~------~~~g~~--~ 113 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITV------------RR------NAFGRQ--V 113 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEE------------EE------ccCCCc--e
Confidence 123457788888999999999999999998887631 11111100 00 011221 0
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
|..... .++..+ + .....++.|.++| ..+ ++++.++|.++ +. +++++.. .++|+|||||++
T Consensus 114 g~~~~~-----~~~~~~-~--~~~~~~~~H~d~v-----~~l-p~~~~vlA~~~-~~-~~~~~~~---~~~g~QfHPE~~ 174 (189)
T PRK13525 114 DSFEAE-----LDIKGL-G--EPFPAVFIRAPYI-----EEV-GPGVEVLATVG-GR-IVAVRQG---NILATSFHPELT 174 (189)
T ss_pred eeEEec-----ccccCC-C--CCeEEEEEeCcee-----ecc-CCCcEEEEEcC-CE-EEEEEeC---CEEEEEeCCccC
Confidence 111111 122222 1 1234567777554 345 78899999975 43 6676542 367999999997
Q ss_pred CCCCCchHHHHHHHHHHh
Q 007533 528 SRPGKPSPLFLGLIAAAC 545 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~aa~ 545 (599)
.. ..||++|++.|.
T Consensus 175 ~~----~~~~~~f~~~~~ 188 (189)
T PRK13525 175 DD----TRVHRYFLEMVK 188 (189)
T ss_pred CC----chHHHHHHHHhh
Confidence 64 589999999875
No 66
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.75 E-value=7.9e-18 Score=170.35 Aligned_cols=141 Identities=21% Similarity=0.278 Sum_probs=97.5
Q ss_pred hccCCCEEEeCCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeee
Q 007533 357 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 431 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~ 431 (599)
.+.++|||||+||+.+. ........++.+.+.++|+||||+|||+|+.++|++|..-+.
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~---------------- 114 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPA---------------- 114 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCC----------------
Confidence 35789999999998652 235567888999999999999999999999999998842110
Q ss_pred eCCCCCcCcCCCccccCceeeEEecC---CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEE
Q 007533 432 FMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEI 508 (599)
Q Consensus 432 ~mpe~~~~~~GgtmrLG~~~v~l~~~---~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~ 508 (599)
|+ ..|.+++.+.+. +.++..+. .. +...+.|+++| ..+ +.|++++|+++++. +++
T Consensus 115 ----------g~--e~G~~~v~~~~~~~~~~l~~~~~-~~--~~v~~~H~d~v-----~~l-p~~~~~la~s~~~~-iqa 172 (237)
T PRK09065 115 ----------GR--ESGTVTVELHPAAADDPLFAGLP-AQ--FPAHLTHLQSV-----LRL-PPGAVVLARSAQDP-HQA 172 (237)
T ss_pred ----------CC--ccceEEEEEccccccChhhhcCC-cc--CcEeeehhhhh-----hhC-CCCCEEEEcCCCCC-eeE
Confidence 11 123455655442 12333322 22 33345566543 345 78999999998887 999
Q ss_pred EEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 509 VELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 509 iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
++++++ ++|+|||||++. ..+..+++.
T Consensus 173 ~~~~~~--i~gvQfHPE~~~------~~~~~~~~~ 199 (237)
T PRK09065 173 FRYGPH--AWGVQFHPEFTA------HIMRAYLRA 199 (237)
T ss_pred EEeCCC--EEEEEeCCcCCH------HHHHHHHHh
Confidence 999864 679999999853 455666554
No 67
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.75 E-value=2.4e-17 Score=166.72 Aligned_cols=178 Identities=19% Similarity=0.185 Sum_probs=117.6
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC----
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN---- 372 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~---- 372 (599)
+|.++ ..... ..-.++.++|+..|..+.+. .....+... ..+.++|||||+||+..
T Consensus 4 ~ilvi-qh~~~-e~~g~i~~~L~~~g~~~~v~----~~~~~~~~~--------------~~~~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 4 TAVAI-RHVAF-EDLGSFEQVLGARGYRVRYV----DVGVDDLET--------------LDALEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred eEEEE-ECCCC-CCChHHHHHHHHCCCeEEEE----ecCCCccCC--------------CCccCCCEEEECCCCCCCCCC
Confidence 57777 34332 24567899999999776441 112222100 23568999999999753
Q ss_pred ---CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCc
Q 007533 373 ---RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 449 (599)
Q Consensus 373 ---rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~ 449 (599)
+.+...+..++.+.+.++|+||||+|||+|+.++|++|..- . ...+|.
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~---~--------------------------~~e~G~ 114 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPG---G--------------------------QKEIGW 114 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecC---C--------------------------CCeEeE
Confidence 23456788899999999999999999999999999988420 0 012334
Q ss_pred eeeEEecCC--chhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCc
Q 007533 450 RRTYFQIKD--CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 527 (599)
Q Consensus 450 ~~v~l~~~~--s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~s 527 (599)
.++.+.+.. ..+..+. ......|.|++.+ .+ +.|.+.+|.++.+. ++++...++ ++|+|||||++
T Consensus 115 ~~i~~t~~g~~~pl~~~~---~~~~~~~~H~d~~------~l-P~ga~~La~s~~~~-~qaf~~g~~--~~g~QfHpE~~ 181 (234)
T PRK07053 115 APLTLTDAGRASPLRHLG---AGTPVLHWHGDTF------DL-PEGATLLASTPACR-HQAFAWGNH--VLALQFHPEAR 181 (234)
T ss_pred EEEEEeccccCChhhcCC---CcceEEEEeCCEE------ec-CCCCEEEEcCCCCC-eeEEEeCCC--EEEEeeCccCC
Confidence 455554421 1222332 2234567777554 24 78999999988776 899998653 67999999987
Q ss_pred CCCCCchHHHHHHHH
Q 007533 528 SRPGKPSPLFLGLIA 542 (599)
Q Consensus 528 s~p~~p~pLF~~Fv~ 542 (599)
.. .+..++.
T Consensus 182 ~~------~~~~w~~ 190 (234)
T PRK07053 182 ED------RFEAWLI 190 (234)
T ss_pred HH------HHHHHHH
Confidence 53 5566554
No 68
>PRK05665 amidotransferase; Provisional
Probab=99.75 E-value=4.2e-17 Score=165.52 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=93.5
Q ss_pred hccCCCEEEeCCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeee
Q 007533 357 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 431 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~ 431 (599)
.+.++|||||+||+.+. .+......++.+.++++|+||||+|||+|+.++|++|..-+
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~----------------- 116 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERAS----------------- 116 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCC-----------------
Confidence 46789999999997653 33556778888888999999999999999999999984311
Q ss_pred eCCCCCcCcCCCccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEe
Q 007533 432 FMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVEL 511 (599)
Q Consensus 432 ~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~ 511 (599)
.|+ ..|.+++.+.+...++..+. ..+...+.|+ +.+..| +.|++++|.++.+. +++++.
T Consensus 117 ---------~G~--e~G~~~~~~~~~~~~~~~~~---~~~~~~~~H~-----D~V~~L-P~ga~~La~s~~~~-~q~~~~ 175 (240)
T PRK05665 117 ---------QGW--GVGIHRYQLAAHAPWMSPAV---TELTLLISHQ-----DQVTAL-PEGATVIASSDFCP-FAAYHI 175 (240)
T ss_pred ---------CCc--ccceEEEEecCCCccccCCC---CceEEEEEcC-----CeeeeC-CCCcEEEEeCCCCc-EEEEEe
Confidence 122 12334444443322222221 2233445565 445566 88999999988877 999998
Q ss_pred CCCCeEEEEcccCCCcCC
Q 007533 512 PNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 512 ~~hpffvGvQFHPE~ss~ 529 (599)
.++ ++|+|||||++..
T Consensus 176 ~~~--~~g~QfHPE~~~~ 191 (240)
T PRK05665 176 GDQ--VLCFQGHPEFVHD 191 (240)
T ss_pred CCC--EEEEecCCcCcHH
Confidence 764 6799999999764
No 69
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.75 E-value=2.6e-17 Score=161.83 Aligned_cols=185 Identities=21% Similarity=0.217 Sum_probs=110.0
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|+|| +|+.. +-.++.++|+..|+++.+. ..+ +.++++|+|++||+ |++..
T Consensus 1 ~~~~-~~~~g--n~~~l~~~l~~~g~~v~v~------~~~------------------~~l~~~d~lii~G~-~~~~~~~ 52 (196)
T TIGR01855 1 IVII-DYGVG--NLGSVKRALKRVGAEPVVV------KDS------------------KEAELADKLILPGV-GAFGAAM 52 (196)
T ss_pred CEEE-ecCCc--HHHHHHHHHHHCCCcEEEE------cCH------------------HHhccCCEEEECCC-CCHHHHH
Confidence 5778 68754 6779999999999876542 211 34678999999883 33221
Q ss_pred ---hHH-HHHH-HHHHHcCCCEEEEehhHHHHHHHh--cccc--ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 376 ---QGK-ILAA-KYAREHRIPYLGICLGMQVAVIEF--ARSV--LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 376 ---eg~-i~ai-k~are~~iP~LGICLGmQll~ief--gr~V--lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
... +..+ +.+.+.++|+||||+|||+|+.++ ++++ +|+-++. +..++....+++|++
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~------------v~~~~~~~~~~~g~~-- 118 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGN------------VVKLEARKVPHMGWN-- 118 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEE------------EEECCCCCCCcccCe--
Confidence 111 3344 777788999999999999998763 1111 1111111 111111122445553
Q ss_pred cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCC
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 526 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ 526 (599)
.+.....++++..+. + ....+++|+|++.+.. +. +++.++++..+.+ .....+ ++|+|||||+
T Consensus 119 ----~~~~~~~~~l~~~l~-~--~~~v~~~Hs~~v~~~~-------~~-~~a~~~~g~~~~~-~~~~~~-i~GvQFHPE~ 181 (196)
T TIGR01855 119 ----EVHPVKESPLLNGID-E--GAYFYFVHSYYAVCEE-------EA-VLAYADYGEKFPA-AVQKGN-IFGTQFHPEK 181 (196)
T ss_pred ----eeeeCCCChHHhCCC-C--CCEEEEECeeEecCCC-------Cc-EEEEEcCCcEEEE-EEecCC-EEEEECCCcc
Confidence 222233324444443 2 2345788999986421 22 5566666663443 444556 6799999997
Q ss_pred cCCCCCchHHHHHHHHH
Q 007533 527 KSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 527 ss~p~~p~pLF~~Fv~a 543 (599)
+. .....++++|+++
T Consensus 182 ~~--~~g~~ll~~f~~~ 196 (196)
T TIGR01855 182 SG--KTGLKLLENFLEL 196 (196)
T ss_pred Cc--HhHHHHHHHHHhC
Confidence 74 3578899999863
No 70
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.74 E-value=5.4e-17 Score=181.15 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=126.5
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
...+|+++ ||+.. +-.|+.++|+..|+++. |+... +.+.++|+||+|||....
T Consensus 5 ~~~~i~ii-DyG~G--N~~sl~~al~~~G~~v~------~v~~~------------------~~l~~~D~lIlpG~gs~~ 57 (538)
T PLN02617 5 ADSEVTLL-DYGAG--NVRSVRNAIRHLGFTIK------DVQTP------------------EDILNADRLIFPGVGAFG 57 (538)
T ss_pred CCCeEEEE-ECCCC--CHHHHHHHHHHCCCeEE------EECCh------------------hhhccCCEEEECCCCCHH
Confidence 35689999 69855 78899999999998763 33321 357899999999953221
Q ss_pred c-h-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhc--ccc--ccccCCCccccCCCCCCCeeeeCCCCCcCcCCC
Q 007533 374 G-V-----QGKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSV--LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 443 (599)
Q Consensus 374 g-~-----eg~i~aik~are~~iP~LGICLGmQll~iefg--r~V--lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Gg 443 (599)
. . .+....++.+.+.++|+||||+|||+|+..+. +.+ +|+-+.....+... ++...+|+||
T Consensus 58 ~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~---------~~~~vp~iGw 128 (538)
T PLN02617 58 SAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSS---------NGLRVPHIGW 128 (538)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCcc---------CCCCCCeecc
Confidence 1 1 24567888888899999999999999987641 112 22222211122100 0124578888
Q ss_pred ccccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCC-CeEEEEEeCCCCeEEEEcc
Q 007533 444 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS-QRMEIVELPNHPYFIGVQF 522 (599)
Q Consensus 444 tmrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg-~~vE~iE~~~hpffvGvQF 522 (599)
+ ++...++++++..+ + .. ..+|.|+|.+.+.. ..+..+.+.+..+ ..+++++.. +++|+||
T Consensus 129 ~------~V~~~~~spL~~~l-~-~~--~vy~vHSy~v~~~p-----~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQF 190 (538)
T PLN02617 129 N------ALQITKDSELLDGV-G-GR--HVYFVHSYRATPSD-----ENKDWVLATCNYGGEFIASVRKG---NVHAVQF 190 (538)
T ss_pred e------EEEecCCChhHhcC-C-Cc--EEEEEeEEEEEecC-----CCCcEEEEEEccCCCcEEEEEeC---CEEEEEc
Confidence 4 34444443455455 2 22 34678999864311 2233344554432 348899864 3789999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhcchh
Q 007533 523 HPEYKSRPGKPSPLFLGLIAAACGQLD 549 (599)
Q Consensus 523 HPE~ss~p~~p~pLF~~Fv~aa~~~~~ 549 (599)
|||++.. ....+|++|++.....+.
T Consensus 191 HPE~s~~--~G~~L~~nFl~~~~~~~~ 215 (538)
T PLN02617 191 HPEKSGA--TGLSILRRFLEPKSSATQ 215 (538)
T ss_pred CCccCch--hHHHHHHHHHHhhhhhhc
Confidence 9999862 467899999988875443
No 71
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.74 E-value=3.9e-17 Score=165.90 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=91.1
Q ss_pred hccCCCEEEeCCCCCCCch------h-------HHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCC
Q 007533 357 LLKGADGILVPGGFGNRGV------Q-------GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 423 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~rg~------e-------g~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~ 423 (599)
.++++|||||+||+++... . ....+++++.++++|+||||+|||+|+.++|++|.. . .
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~--~------ 118 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-T--Y------ 118 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-C--C------
Confidence 4678999999999865321 1 123567777789999999999999999999998843 1 0
Q ss_pred CCCCCeeeeCCCCCcCcCCCccccCceeeEEecC---CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEe
Q 007533 424 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD 500 (599)
Q Consensus 424 ~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~---~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s 500 (599)
|+ ..|.+++.+.+. +.++..+. ..+...|.|++.| ..+ +.|++++|.+
T Consensus 119 ------------------g~--e~G~~~v~l~~~g~~~~l~~~~~---~~~~~~~~H~d~V-----~~l-p~~~~vlA~s 169 (242)
T PRK07567 119 ------------------GE--PVGAVTVSLTDAGRADPLLAGLP---DTFTAFVGHKEAV-----SAL-PPGAVLLATS 169 (242)
T ss_pred ------------------CC--cCccEEEEECCccCCChhhcCCC---CceEEEeehhhhh-----hhC-CCCCEEEEeC
Confidence 11 123455655442 12333332 2234456676544 445 8899999999
Q ss_pred CCCCeEEEEEeCCCCeEEEEcccCCCcCC
Q 007533 501 ETSQRMEIVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 501 ~dg~~vE~iE~~~hpffvGvQFHPE~ss~ 529 (599)
+++. ++++++.++ ++|+|||||++..
T Consensus 170 ~~~~-vqa~~~~~~--~~gvQfHPE~~~~ 195 (242)
T PRK07567 170 PTCP-VQMFRVGEN--VYATQFHPELDAD 195 (242)
T ss_pred CCCC-EEEEEeCCC--EEEEEeCCcCCHH
Confidence 8776 999998764 6799999999653
No 72
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.71 E-value=2.2e-16 Score=158.79 Aligned_cols=192 Identities=24% Similarity=0.356 Sum_probs=120.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC--
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-- 373 (599)
+||+|+ +|... ..-.++.++|+.+|+.+.. .|.... .+.++|+|+||||+...
T Consensus 1 ~~v~Vl-~~~G~-n~~~~~~~al~~~G~~~~~----i~~~~~-------------------~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPGT-NCDRDTVYALRLLGVDAEI----VWYEDG-------------------SLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCCc-CcHHHHHHHHHHCCCeEEE----EecCCC-------------------CCCCCCEEEECCCCccccc
Confidence 479999 56432 1346788999999987643 243221 25689999999997431
Q ss_pred -------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 374 -------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 374 -------g~eg~i~aik~are~~iP~LGICLGmQll~ie--fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
........++.+.+.++|+||||.|+|+|+.+ +.+.+. ...+.+|
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~---~n~~~~~----------------------- 109 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALL---PNDSLRF----------------------- 109 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCcee---ecCCCce-----------------------
Confidence 01335677888888999999999999999763 222221 0011111
Q ss_pred cccCcee--eEEecCCchhhhccCCceeEEe--eee-eeeeeCchhhhhhccCCeEEEEE-e----------CCCC--eE
Q 007533 445 MRLGSRR--TYFQIKDCKSAKLYGNRTFIDE--RHR-HRYEVNPDMIARLENAGLSFTGK-D----------ETSQ--RM 506 (599)
Q Consensus 445 mrLG~~~--v~l~~~~s~l~~iyg~~~~I~e--rHr-HrYeVnp~~v~~le~~Gl~~sa~-s----------~dg~--~v 506 (599)
+... +.+.++.+.+.+-+.....+.. .|. |||.++++.+++|++.+..+.-. + ++|. .|
T Consensus 110 ---~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i 186 (227)
T TIGR01737 110 ---ICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNI 186 (227)
T ss_pred ---EEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHH
Confidence 1111 2222221333222221122222 344 59999999888897887644333 3 5552 38
Q ss_pred EEEEeCCCCeEEEEcccCCCcC----CCCCchHHHHHHHH
Q 007533 507 EIVELPNHPYFIGVQFHPEYKS----RPGKPSPLFLGLIA 542 (599)
Q Consensus 507 E~iE~~~hpffvGvQFHPE~ss----~p~~p~pLF~~Fv~ 542 (599)
+++.+++.+. +|+|||||... .+.++..+|++|++
T Consensus 187 ~~i~~~~~~~-~g~~~HpE~~~~~~~~~~~g~~~~~~~~~ 225 (227)
T TIGR01737 187 AGIVNERGNV-LGMMPHPERASEKLLGGDDGLKLFESLVE 225 (227)
T ss_pred cccCCCCCCE-EEEecCchhhcccccCCcccHHHHHHHHh
Confidence 8899999995 59999999984 33467899999975
No 73
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.70 E-value=2e-16 Score=154.44 Aligned_cols=175 Identities=20% Similarity=0.265 Sum_probs=106.6
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC---
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 373 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r--- 373 (599)
||+++. ++.+|.|..++|+++|+++.. +.+. +.++++|+|++|||++..
T Consensus 1 ~igvl~----~qg~~~e~~~~l~~~g~~~~~------v~~~------------------~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVLA----LQGAVREHARALEALGVEGVE------VKRP------------------EQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEEE----ccCCHHHHHHHHHHCCCEEEE------ECCh------------------HHhccCCEEEECCCCHHHHHH
Confidence 467663 445889999999999986643 3321 357899999999998663
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc---ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 007533 374 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV---LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 448 (599)
Q Consensus 374 --g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V---lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG 448 (599)
...+....++.+.++++|+||||+|||+|+-++.... +|+-++.. .. ...|+ ..+
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v------------~~------~~~g~--~~~ 112 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTV------------ER------NAYGR--QVD 112 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEE------------Ee------eccCC--ccc
Confidence 1234567788888999999999999999987762110 11111100 00 00111 112
Q ss_pred ceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcC
Q 007533 449 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 528 (599)
Q Consensus 449 ~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss 528 (599)
...+.+... .+ + ......-..|. +++..+ +.+++++|++++ . +++++.. + ++|+|||||++.
T Consensus 113 s~~~~l~~~-----~~-~-~~~~~~~~~h~-----~~v~~l-p~~~~vla~~~~-~-~~a~~~~--~-~~gvQfHPE~~~ 174 (184)
T TIGR03800 113 SFEAEVDIK-----GV-G-DDPITGVFIRA-----PKIVSV-GNGVEILAKVGN-R-IVAVRQG--N-ILVSSFHPELTD 174 (184)
T ss_pred cEEEEeecc-----cC-C-CCcceEEEEcC-----CCcccC-CCCeEEEEEeCC-e-eEEEEeC--C-EEEEEeCCccCC
Confidence 222222211 00 0 00011112232 556666 889999999654 4 7788644 3 679999999974
Q ss_pred CCCCchHHHHHHH
Q 007533 529 RPGKPSPLFLGLI 541 (599)
Q Consensus 529 ~p~~p~pLF~~Fv 541 (599)
. .++|+.|+
T Consensus 175 ~----~~~~~~f~ 183 (184)
T TIGR03800 175 D----HRVHEYFL 183 (184)
T ss_pred C----chHHHHhh
Confidence 3 37888887
No 74
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3e-16 Score=169.20 Aligned_cols=196 Identities=23% Similarity=0.276 Sum_probs=125.5
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccC---CCEEEeCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG---ADGILVPG 368 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~---~DGIlVPG 368 (599)
.++++.+++.|. +|. ++.++|..+ +..+.+.+...|+.+ ++|+.+.+ +|+|+|.+
T Consensus 13 ~rl~~LlID~YD----SyTfNiy~ll~~~~~vp~V~~vh~~~~~~----------------d~~~~l~q~~~FDaIVVgP 72 (767)
T KOG1224|consen 13 PRLRTLLIDNYD----SYTFNIYQLLSTINGVPPVVIVHDEWTWE----------------DAYHYLYQDVAFDAIVVGP 72 (767)
T ss_pred hheeEEEEeccc----chhhhHHHHHHHhcCCCcEEEEeccccCH----------------HHHHHHhhccccceEEecC
Confidence 458999999887 555 788888776 455544444445432 24455444 99999999
Q ss_pred CCCCCchhHHHHHHHHHHH--cCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccc
Q 007533 369 GFGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMR 446 (599)
Q Consensus 369 GfG~rg~eg~i~aik~are--~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggtmr 446 (599)
|||.|.-..-+..+....+ +.+|+||||||||.|+.+.|+.|.- +| + +..|.
T Consensus 73 GPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~---~n-------~-------------p~HGr--- 126 (767)
T KOG1224|consen 73 GPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVH---AN-------E-------------PVHGR--- 126 (767)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceec---CC-------C-------------cccce---
Confidence 9999933222222222222 2599999999999999998887731 11 0 11121
Q ss_pred cCceeeEEecCCchhhhccCCc--eeEEeeeeeeeeeCchhhhhhccCCeEEEEEe--CCCCeEEEEEeCCCCeEEEEcc
Q 007533 447 LGSRRTYFQIKDCKSAKLYGNR--TFIDERHRHRYEVNPDMIARLENAGLSFTGKD--ETSQRMEIVELPNHPYFIGVQF 522 (599)
Q Consensus 447 LG~~~v~l~~~~s~l~~iyg~~--~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s--~dg~~vE~iE~~~hpffvGvQF 522 (599)
...+.. +++-++.++..+. ..-..|+ |+..+|+.-++.+ .+..+. ++|-.++.+.+++.||| |+||
T Consensus 127 --vs~i~~-~~~~~f~gi~sg~~~~fK~~RY-HSL~in~~pid~l-----~il~t~~ddng~ilMsi~~~~fPhf-G~qy 196 (767)
T KOG1224|consen 127 --VSGIEH-DGNILFSGIPSGRNSDFKVVRY-HSLIINSLPIDLL-----PILWTIYDDNGHILMSIMHSSFPHF-GLQY 196 (767)
T ss_pred --eeeEEe-cCcEEEccCCCCCcccceeEEe-EEEEecCCchhhh-----cceeEeecCCceEEEEeeccCCCcc-ceee
Confidence 011111 1112333343221 1122566 8999998766654 234443 45558999999999997 9999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhc
Q 007533 523 HPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 523 HPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
|||.-... .+..||++|++.+..
T Consensus 197 HPES~~s~-~g~~lfkNFl~lt~~ 219 (767)
T KOG1224|consen 197 HPESIAST-YGSQLFKNFLDLTVN 219 (767)
T ss_pred ChHHhhhh-hhHHHHHHHHHhhcc
Confidence 99987665 478999999998854
No 75
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.67 E-value=5.9e-16 Score=146.37 Aligned_cols=197 Identities=18% Similarity=0.269 Sum_probs=129.1
Q ss_pred EEEEEeecCCCcchHHHHHHHH-HHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 297 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL-~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
-|.+++.|.++. .++.+.| -..|+...+ . ..++++-+. -.-.+++++++++|||.+..
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~V----y--RNDeiTV~E------------l~~~NP~~LliSPGPG~P~D 78 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEV----Y--RNDELTVEE------------LKRKNPRGLLISPGPGTPQD 78 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEE----E--ecCcccHHH------------HhhcCCCeEEecCCCCCCcc
Confidence 488888998652 3677777 444555433 1 223332111 12468999999999999986
Q ss_pred hHH-HHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEE
Q 007533 376 QGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 454 (599)
Q Consensus 376 eg~-i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l 454 (599)
.|. ..++++. .-++|+||||+|.|++.-+||++|.. .-|. ++ | |-+ .++..
T Consensus 79 sGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~------a~~~------i~---------H-GK~-----S~i~~ 130 (223)
T KOG0026|consen 79 SGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVR------SPFG------VM---------H-GKS-----SMVHY 130 (223)
T ss_pred ccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEec------cCcc------ee---------e-ccc-----ccccc
Confidence 553 3455554 35899999999999999999998842 1110 00 0 100 01111
Q ss_pred ec-C-CchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCC
Q 007533 455 QI-K-DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK 532 (599)
Q Consensus 455 ~~-~-~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~ 532 (599)
.. + ..+++.+. +..+..|+ |+.....+.++ ..-|.++++.++|- +++.+|+.+..+-|||||||.--.. .
T Consensus 131 D~~~~~G~f~g~~--q~~~V~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQfHPESIlte-e 202 (223)
T KOG0026|consen 131 DEKGEEGLFSGLS--NPFIVGRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQFHPESIITT-E 202 (223)
T ss_pred CCccccccccCCC--CCeEEEee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceeecchhhhhh-h
Confidence 10 0 02333343 33445676 88776655443 35789999999997 9999999998888999999976554 4
Q ss_pred chHHHHHHHHHHhcchhh
Q 007533 533 PSPLFLGLIAAACGQLDT 550 (599)
Q Consensus 533 p~pLF~~Fv~aa~~~~~~ 550 (599)
++-+.++|++...+...+
T Consensus 203 Gk~~irNflni~~~tWeE 220 (223)
T KOG0026|consen 203 GKTIVRNFIKIVEKKWSE 220 (223)
T ss_pred hHHHHHHHHHhcccchhc
Confidence 788999999988876554
No 76
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.66 E-value=3.4e-15 Score=151.04 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=94.5
Q ss_pred hccCCCEEEeCCCCCCCc--------h--hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCC
Q 007533 357 LLKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTK 426 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~rg--------~--eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~ 426 (599)
.+.++|||||+||+.... . ......++.+.++++|+||||+|+|+++.++|++|..-+.
T Consensus 42 ~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~----------- 110 (235)
T PRK08250 42 NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE----------- 110 (235)
T ss_pred CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCC-----------
Confidence 357899999999976521 1 2446778888899999999999999999999999842110
Q ss_pred CCeeeeCCCCCcCcCCCccccCceeeEEecCC---chhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCC
Q 007533 427 NPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKD---CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS 503 (599)
Q Consensus 427 ~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~---s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg 503 (599)
... |.+++.+.+.. .++..+. ....+ .|.|+..+ .+ +.|++++|.++.+
T Consensus 111 ------------~e~------G~~~v~lt~~g~~d~l~~~~~-~~~~v--~~~H~d~~------~l-P~~a~~LA~s~~~ 162 (235)
T PRK08250 111 ------------KEI------GYFPITLTEAGLKDPLLSHFG-STLTV--GHWHNDMP------GL-TDQAKVLATSEGC 162 (235)
T ss_pred ------------Cce------eEEEEEEccccccCchhhcCC-CCcEE--EEEeccee------cC-CCCCEEEECCCCC
Confidence 122 33455554421 2333332 23333 45565432 34 8899999998777
Q ss_pred CeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHH
Q 007533 504 QRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 543 (599)
Q Consensus 504 ~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~a 543 (599)
. ++++...++ ++|+|||||++. ..+..+++.
T Consensus 163 ~-~qa~~~~~~--~~g~QfHPE~~~------~~~~~~~~~ 193 (235)
T PRK08250 163 P-RQIVQYSNL--VYGFQCHMEFTV------EAVELLIAH 193 (235)
T ss_pred C-ceEEEeCCC--EEEEeecCcCCH------HHHHHHHHh
Confidence 6 999998765 679999999864 355555553
No 77
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.58 E-value=1.3e-14 Score=141.24 Aligned_cols=167 Identities=19% Similarity=0.326 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-----chhHHHHHHH
Q 007533 309 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAK 383 (599)
Q Consensus 309 DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-----g~eg~i~aik 383 (599)
.++.+..++|+..|+++.. +... +.+.++|||++|||+... ........++
T Consensus 8 g~~~e~~~~l~~~g~~v~~------v~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~ 63 (183)
T cd01749 8 GDFREHIRALERLGVEVIE------VRTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLR 63 (183)
T ss_pred CCcHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHH
Confidence 3556667999999987643 3321 347889999999986431 1134567788
Q ss_pred HHHHcCCCEEEEehhHHHHHHHhccc----cccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCc
Q 007533 384 YAREHRIPYLGICLGMQVAVIEFARS----VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDC 459 (599)
Q Consensus 384 ~are~~iP~LGICLGmQll~iefgr~----Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s 459 (599)
.+.++++|+||||+|||+|+.+++.. -+|+-+.. +. ....|+. .|.....+..
T Consensus 64 ~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~------------v~------~~~~g~~--~g~~~~~l~~--- 120 (183)
T cd01749 64 EFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDIT------------VR------RNAFGRQ--VDSFEADLDI--- 120 (183)
T ss_pred HHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEE------------EE------eeccccc--cceEEEcCCC---
Confidence 88889999999999999999888753 11111110 00 0011211 1111111111
Q ss_pred hhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHH
Q 007533 460 KSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLG 539 (599)
Q Consensus 460 ~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~ 539 (599)
..+ + .......+.|. +.+..+ +.+++++|.++ +. +++++.. + ++|+|||||++.. ..+|+.
T Consensus 121 --~~~-~-~~~~~~~~~h~-----~~v~~~-p~~~~~la~~~-~~-~~a~~~~--~-~~g~qfHPE~~~~----~~~~~~ 181 (183)
T cd01749 121 --PGL-G-LGPFPAVFIRA-----PVIEEV-GPGVEVLAEYD-GK-IVAVRQG--N-VLATSFHPELTDD----TRIHEY 181 (183)
T ss_pred --CcC-C-CCccEEEEEEC-----cEEEEc-CCCcEEEEecC-CE-EEEEEEC--C-EEEEEcCCccCCC----cchhhh
Confidence 011 0 11122334454 334444 77999999975 44 5677754 3 6799999999854 367777
Q ss_pred HH
Q 007533 540 LI 541 (599)
Q Consensus 540 Fv 541 (599)
|+
T Consensus 182 f~ 183 (183)
T cd01749 182 FL 183 (183)
T ss_pred hC
Confidence 64
No 78
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.56 E-value=1.8e-14 Score=149.03 Aligned_cols=190 Identities=22% Similarity=0.310 Sum_probs=123.5
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC-C-CCCC--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR-- 373 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG-G-fG~r-- 373 (599)
+-++ +|+.. +..|+.+||+|.|+.+.. +.+ | .++.++|-+|+|| | ||..
T Consensus 4 v~~l-d~~ag--n~~si~nal~hlg~~i~~------v~~-----------P-------~DI~~a~rLIfPGVGnfg~~~D 56 (541)
T KOG0623|consen 4 VTLL-DYGAG--NVRSIRNALRHLGFSIKD------VQT-----------P-------GDILNADRLIFPGVGNFGPAMD 56 (541)
T ss_pred EEEE-ecCCc--cHHHHHHHHHhcCceeee------ccC-----------c-------hhhccCceEeecCcccchHHHH
Confidence 4556 68754 789999999999998743 222 2 4578999999999 3 5542
Q ss_pred --chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc-------ccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 374 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV-------LNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 374 --g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V-------lgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
.-.|+.+.++...++++|++|||+|+|+| |.+.+ +|..+.-...||.. +..++|+||+
T Consensus 57 ~L~~~Gf~eplr~YiesgkPfmgicvGlQaL---F~gSvE~p~skGLgvipg~v~RFD~s----------~k~VPhIGWN 123 (541)
T KOG0623|consen 57 VLNRTGFAEPLRKYIESGKPFMGICVGLQAL---FDGSVENPPSKGLGVIPGIVGRFDAS----------AKIVPHIGWN 123 (541)
T ss_pred HHhhhhhHHHHHHHHhcCCCeEeehhhHHHH---hcccccCCCcCcccccccceecccCC----------CCcCCccccc
Confidence 23678889999999999999999999998 34433 11111112222221 1347899996
Q ss_pred cccCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcccC
Q 007533 445 MRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHP 524 (599)
Q Consensus 445 mrLG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQFHP 524 (599)
- |.+..+ +.+... ...-..++.|+| .|++--..+++.++++ ++...|. -+.|.......+.++||||
T Consensus 124 s------c~v~sd-~effg~---~p~~~~YFVHSy-l~~ek~~~len~~wki-at~kYG~-E~Fi~ai~knN~~AtQFHP 190 (541)
T KOG0623|consen 124 S------CQVGSD-SEFFGD---VPNRHVYFVHSY-LNREKPKSLENKDWKI-ATCKYGS-ESFISAIRKNNVHATQFHP 190 (541)
T ss_pred c------cccCCc-cccccc---CCCceEEEEeee-cccccccCCCCCCceE-eeeccCc-HHHHHHHhcCceeeEeccc
Confidence 2 333333 333322 222245788999 5666555677888876 4445554 2333333344577999999
Q ss_pred CCcCCCCCchHHHHHHHH
Q 007533 525 EYKSRPGKPSPLFLGLIA 542 (599)
Q Consensus 525 E~ss~p~~p~pLF~~Fv~ 542 (599)
|++... +....++|+.
T Consensus 191 EKSG~a--GL~vl~~FL~ 206 (541)
T KOG0623|consen 191 EKSGEA--GLSVLRRFLH 206 (541)
T ss_pred ccccch--hHHHHHHHHh
Confidence 998875 5678888887
No 79
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.43 E-value=1.5e-12 Score=126.63 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=60.1
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
+||+++.=++ +.....+||++.|+++.+ +.. | +.++++|+|++|||+++..
T Consensus 3 ~~igVLalqG----~~~Eh~~al~~lG~~v~~------v~~-----------~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQG----GYQKHADMFKSLGVEVKL------VKF-----------N-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECCc----cHHHHHHHHHHcCCcEEE------ECC-----------H-------HHHhCCCEEEECCChHHHHH
Confidence 7899995444 677789999999987432 221 1 4578999999999976641
Q ss_pred ----hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 375 ----VQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 375 ----~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++..+++...+ ++|+||||+|||+|+-
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 1456778887665 6799999999999964
No 80
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.41 E-value=2.4e-11 Score=133.95 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=66.0
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
.++|||+ +.-.+.-.|..-+++|+..|+++ .|++.-+ + +.+.++|+|++|||+...
T Consensus 245 ~~~iava-~d~af~f~y~e~~~~L~~~g~~~------~~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVA-RDAAFNFYYPENLELLRAAGAEL------VFFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEE-ecCcccccHHHHHHHHHHCCCEE------EEeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 4799999 55555556778889999887654 4565311 0 235689999999997532
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 374 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 374 -----g~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
...++...++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124578889999999999999999999997654
No 81
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.39 E-value=1.4e-11 Score=126.69 Aligned_cols=212 Identities=21% Similarity=0.252 Sum_probs=124.9
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC--C
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 372 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG--~ 372 (599)
++||||+ .+.... .=.+..++|+++|+.+.. .|+. ++.+. + ..++++|+|++||||+ +
T Consensus 3 ~~kvaVl-~~pG~n-~d~e~~~Al~~aG~~v~~----v~~~--~~~~~-----~-------~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVL-RMEGTN-CEDETVKAFRRLGVEPEY----VHIN--DLAAE-----R-------KSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEE-eCCCCC-CHHHHHHHHHHCCCcEEE----Eeec--ccccc-----c-------cchhhCCEEEECCCCCccc
Confidence 4789999 453332 224778999999988633 3432 22110 0 2478999999999974 3
Q ss_pred Cc---------h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCC
Q 007533 373 RG---------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 442 (599)
Q Consensus 373 rg---------~-eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~G 442 (599)
.- . ..+..+++.+.++++|+||||+|+|+|+- .| ++ +.. .... . .+.+.++....
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~-~G--lL--pg~--~~~~-~--~~~~~L~~N~s----- 127 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE-LG--LL--PGF--DEIA-E--KPEMALTVNES----- 127 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH-CC--CC--CCC--Cccc-c--CCcceEeecCC-----
Confidence 21 1 11336788889999999999999999964 22 22 110 0000 0 01112222211
Q ss_pred CccccCce--eeEEecCCchhhhccCCc-eeEEeeeee-eee-eCchhhhhhccCCeEEEEE------------eCCCCe
Q 007533 443 GTMRLGSR--RTYFQIKDCKSAKLYGNR-TFIDERHRH-RYE-VNPDMIARLENAGLSFTGK------------DETSQR 505 (599)
Q Consensus 443 gtmrLG~~--~v~l~~~~s~l~~iyg~~-~~I~erHrH-rYe-Vnp~~v~~le~~Gl~~sa~------------s~dg~~ 505 (599)
+ |+=.+ .+.+....|.+-.-+.+. -.+...|.- ||. .+++.+++|++.|..+.-+ +++|..
T Consensus 128 ~--~f~~~~~~~~v~~~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~ 205 (261)
T PRK01175 128 N--RFECRPTYLKKENRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSI 205 (261)
T ss_pred C--CeEEeeeEEEECCCCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCCh
Confidence 1 11111 122222223333333222 123334543 566 5777778888888776655 455652
Q ss_pred --EEEEEeCCCCeEEEEcccCCCcCCCC------------CchHHHHHHHHHH
Q 007533 506 --MEIVELPNHPYFIGVQFHPEYKSRPG------------KPSPLFLGLIAAA 544 (599)
Q Consensus 506 --vE~iE~~~hpffvGvQFHPE~ss~p~------------~p~pLF~~Fv~aa 544 (599)
|.+|-.++.. ++|...|||....|. ++..+|+++++..
T Consensus 206 ~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 206 YNIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred hhcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHH
Confidence 7888888877 579999999998877 7788999987644
No 82
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.36 E-value=9.8e-13 Score=140.49 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=101.5
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCc
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 438 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~ 438 (599)
.++-||+++|||-+--.+..-..=-...+-++|+||||.|||+|+-.+|+.|.+ ....|
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~if~~~vpvLGICYGmQ~i~~~~Gg~V~~---~~~RE------------------ 116 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPAIFELGVPVLGICYGMQLINKLNGGTVVK---GMVRE------------------ 116 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChhHhccCCcceeehhHHHHHHHHhCCcccc---ccccC------------------
Confidence 588999999998663211100000112344799999999999999999999853 11111
Q ss_pred CcCCCccccCceeeEEecCCchhhhccCCcee--EEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCe
Q 007533 439 THMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF--IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPY 516 (599)
Q Consensus 439 ~~~GgtmrLG~~~v~l~~~~s~l~~iyg~~~~--I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpf 516 (599)
.|...+...+...++.++.+ ... ++..|- +.+.++ ..|+++.|++.+.. +.++.....+
T Consensus 117 --------~G~~eI~v~~~~~lF~~~~~-~~~~~VlltHg-------dsl~~v-~~g~kv~a~s~n~~-va~i~~e~kk- 177 (552)
T KOG1622|consen 117 --------DGEDEIEVDDSVDLFSGLHK-TEFMTVLLTHG-------DSLSKV-PEGFKVVAFSGNKP-VAGILNELKK- 177 (552)
T ss_pred --------CCCceEEcCchhhhhhhhcc-cceeeeeeccc-------cchhhc-cccceeEEeecCcc-eeeehhhhhh-
Confidence 12233333333234555543 222 555554 667676 78899999986654 7788888888
Q ss_pred EEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhc
Q 007533 517 FIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQ 553 (599)
Q Consensus 517 fvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~ 553 (599)
++|+|||||....+. ...++.+|+-..+++...|..
T Consensus 178 iyglqfhpEV~~t~~-g~~ll~nFl~~vc~~~~n~tm 213 (552)
T KOG1622|consen 178 IYGLQFHPEVTLTPN-GKELLKNFLFDVCGCSGNFTM 213 (552)
T ss_pred hhcCCCCCcccccCc-hhHHHHHHHHHHcCCccCcch
Confidence 569999999999884 678999999766666555543
No 83
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.34 E-value=3.6e-11 Score=125.91 Aligned_cols=208 Identities=15% Similarity=0.149 Sum_probs=120.3
Q ss_pred CceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-ccCCchhhhHHHHhc--cCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKLL--KGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~~~~p~~y~~a~~~L--~~~DGIlVPGG 369 (599)
..++|+|+. --..+ +.=..+.+.|..... .+++.|+....-...+ ..+..++|..-++.+ ..+||+||+|.
T Consensus 34 rpl~i~ilN-lMp~k~~TE~q~~rll~~~~~----qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 34 RPLKILILN-LMPKKIETETQFLRLLGNTPL----QVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred CCccEEEEe-CCCCCchHHHHHHHHhcCCCc----eEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 358999993 33221 233466676643322 2345555443322211 111122222223333 58999999998
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCC
Q 007533 370 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 442 (599)
Q Consensus 370 fG~-------rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~G 442 (599)
+-. +-++.+...++|++++.+|+||||.|+|+++.++++-. +.. . +..+
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~-k~~------~-----------------~~K~ 164 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIP-KYT------L-----------------PEKL 164 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCc-cCC------C-----------------CCce
Confidence 743 12456889999999999999999999999998888631 100 0 0001
Q ss_pred CccccCceeeEEe-cCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEc
Q 007533 443 GTMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 443 gtmrLG~~~v~l~-~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQ 521 (599)
+|.++..+. ..+.+++++- +....-|-|--+|..+.+. ...|+.++|.|+... +.++..+++. ++++|
T Consensus 165 ----~Gv~~~~~~~~~~pL~~g~~---d~F~~phSr~~~V~~~~i~--~~~~l~vLA~S~~~g-v~~~~~~~~r-~~~vQ 233 (302)
T PRK05368 165 ----SGVFEHRVLDPHHPLLRGFD---DSFLVPHSRYTEVREEDIR--AATGLEILAESEEAG-VYLFASKDKR-EVFVT 233 (302)
T ss_pred ----eEEEEEEEcCCCChhhcCCC---CccccceeehhhccHHHhc--cCCCCEEEecCCCCC-eEEEEeCCCC-EEEEE
Confidence 222332222 1223444432 1222345444455444443 268999999987666 8899987776 56999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 007533 522 FHPEYKSRPGKPSPLFLGLIAAACG 546 (599)
Q Consensus 522 FHPE~ss~p~~p~pLF~~Fv~aa~~ 546 (599)
+||||... -|-..+.....+
T Consensus 234 gHPEYd~~-----tL~~EY~RD~~~ 253 (302)
T PRK05368 234 GHPEYDAD-----TLAQEYFRDLGA 253 (302)
T ss_pred CCCCCCHH-----HHHHHHHHHHhC
Confidence 99999754 344555544443
No 84
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.33 E-value=8e-12 Score=122.09 Aligned_cols=135 Identities=24% Similarity=0.373 Sum_probs=92.7
Q ss_pred HhccCCCEEEeCCC----CCCCc-hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCee
Q 007533 356 KLLKGADGILVPGG----FGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 430 (599)
Q Consensus 356 ~~L~~~DGIlVPGG----fG~rg-~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi 430 (599)
++|..+||++++|. |++.. +-.+...++.....++|++|||+|||+++.+.|+.|-.
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgr------------------ 116 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGR------------------ 116 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcccc------------------
Confidence 56888999999996 44332 34455667777778899999999999999998888732
Q ss_pred eeCCCCCcCcCCCccccCceeeEEecCCchhhhccCC---ceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEE
Q 007533 431 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGN---RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRME 507 (599)
Q Consensus 431 ~~mpe~~~~~~GgtmrLG~~~v~l~~~~s~l~~iyg~---~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE 507 (599)
...|-.|-+|+-.+ ++.. ....+.+|. .-.|..- |+ +.+-.+ +.|++++|.+++.+ +|
T Consensus 117 --------a~KG~~~~lg~iti-vk~~-~~~~~yFG~~~~~l~Iikc--Hq-----Devle~-PE~a~llasSe~ce-ve 177 (245)
T KOG3179|consen 117 --------APKGPDLGLGSITI-VKDA-EKPEKYFGEIPKSLNIIKC--HQ-----DEVLEL-PEGAELLASSEKCE-VE 177 (245)
T ss_pred --------CCCCCcccccceEE-EEec-ccchhhcccchhhhhHHhh--cc-----cceecC-Cchhhhhccccccc-eE
Confidence 11233343443322 2222 455666651 1123333 43 444445 78999999999988 99
Q ss_pred EEEeCCCCeEEEEcccCCCcCC
Q 007533 508 IVELPNHPYFIGVQFHPEYKSR 529 (599)
Q Consensus 508 ~iE~~~hpffvGvQFHPE~ss~ 529 (599)
++..++| ++.+|-||||+..
T Consensus 178 ~fs~~~~--~l~fQGHPEyn~e 197 (245)
T KOG3179|consen 178 MFSIEDH--LLCFQGHPEYNKE 197 (245)
T ss_pred EEEecce--EEEecCCchhhHH
Confidence 9999998 5799999999865
No 85
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.31 E-value=2.5e-10 Score=113.88 Aligned_cols=196 Identities=22% Similarity=0.310 Sum_probs=123.7
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc-CCCEEEeCCCCCC-
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGN- 372 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlVPGGfG~- 372 (599)
.+||||+ .+-.. .+...+..|++.+|.+... .|.... .+. ++|+|++||||..
T Consensus 2 ~~kvaVi-~fpGt-N~d~d~~~A~~~aG~~~~~----V~~~d~-------------------~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPGT-NCDYDMAAAFERAGFEAED----VWHSDL-------------------LLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCCc-CchHHHHHHHHHcCCCceE----EEeeec-------------------ccCCCccEEEEcCCCCcc
Confidence 4799999 67533 4677888999999998743 465432 234 7999999999854
Q ss_pred -C---c----hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc
Q 007533 373 -R---G----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 444 (599)
Q Consensus 373 -r---g----~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt 444 (599)
- | .+..+..++.+.+.++|+||||-|+|+|+ +.+ + |+.+ |..+.....+
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~-e~g--L--lPGa----l~~N~s~~F~-------------- 113 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS-EAG--L--LPGA----LTRNESLRFE-------------- 113 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH-HcC--c--CCcc----eecCCCCceE--------------
Confidence 1 2 23455667777778999999999999997 533 1 1221 2122111111
Q ss_pred cccCcee--eEEecCCchhhhccCCce--eEEeee-eeeeeeCchhhhhhccCCeEEEEE-----------eCCCCe--E
Q 007533 445 MRLGSRR--TYFQIKDCKSAKLYGNRT--FIDERH-RHRYEVNPDMIARLENAGLSFTGK-----------DETSQR--M 506 (599)
Q Consensus 445 mrLG~~~--v~l~~~~s~l~~iyg~~~--~I~erH-rHrYeVnp~~v~~le~~Gl~~sa~-----------s~dg~~--v 506 (599)
.+. +.+..++|.+-.-|.+.+ .|-..| --||.++.+.+.+|+..|..+.-+ +++|.. |
T Consensus 114 ----cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~I 189 (231)
T COG0047 114 ----CRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGI 189 (231)
T ss_pred ----EEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhc
Confidence 222 233344455555554322 233333 347888888888888887665544 345553 7
Q ss_pred EEEEeCCCCeEEEEcccCCCcCCCCC----chHHHHHHHHH
Q 007533 507 EIVELPNHPYFIGVQFHPEYKSRPGK----PSPLFLGLIAA 543 (599)
Q Consensus 507 E~iE~~~hpffvGvQFHPE~ss~p~~----p~pLF~~Fv~a 543 (599)
.+|-.++.. ++|..-|||..++... ...||++.++.
T Consensus 190 aGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~ 229 (231)
T COG0047 190 AGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKY 229 (231)
T ss_pred eeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHh
Confidence 777777777 6799999999886543 35567666543
No 86
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=3.8e-11 Score=116.14 Aligned_cols=82 Identities=24% Similarity=0.405 Sum_probs=63.9
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcC-CcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG-~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
++|++++ +|.+....+++|+.++ +++ .|+... ++|+++||+++|||-.+.
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e~------~~Vk~~------------------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAEV------VEVKRP------------------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCce------EEEcCH------------------HHhccCcEEEecCccHHHH
Confidence 4788884 5557788899999996 443 344321 578999999999987663
Q ss_pred ----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 374 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 374 ----g~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
...|+...++...++++|+||.|.||-+|+-+
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 12578889999999999999999999999644
No 87
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.28 E-value=5.9e-10 Score=122.92 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=64.4
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+++||++ +.-.+.--|..-+++|+..|++ +.|+.+-. + +.+.++|+|++|||+...-
T Consensus 244 ~~~Iava-~d~afnFy~~~~~~~L~~~g~~------~~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVA-QDQAFNFYYQDNLDALTHNAAE------LVPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEE-echhhceeHHHHHHHHHHCCCE------EEEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 4899999 4444433466788999987765 34565421 0 2356899999999985321
Q ss_pred ------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 375 ------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 375 ------~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
..++...++.+.+++.|+||+|-|||+|+-.+
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 24577889999999999999999999997553
No 88
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.28 E-value=9.7e-11 Score=118.85 Aligned_cols=178 Identities=21% Similarity=0.265 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---------hhH-HH
Q 007533 310 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------VQG-KI 379 (599)
Q Consensus 310 aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg---------~eg-~i 379 (599)
.-.++..+|+.+|+.+.+ .|+... .+. ...++++|||++||||.... ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~~----v~~~~~-~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAED----VWHNDL-LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEEE----EeccCC-ccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 566899999999988643 344321 110 02467899999999975311 111 56
Q ss_pred HHHHHHHHcCCCEEEEehhHHHHHHH--hccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecC
Q 007533 380 LAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 457 (599)
Q Consensus 380 ~aik~are~~iP~LGICLGmQll~ie--fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~ 457 (599)
..++.+.++++|+||||.|+|+|+-. +.+.+.. ..+.++... ..+ |. ....+..+
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~---~~~~~~~~~---------------~~~---~~--v~~~v~~~ 129 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVELGLLPGALIR---NKGLKFICR---------------WQN---RF--VTLRVENN 129 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHcCCCcccccc---CCCCceecc---------------ccC---ce--EEEEEcCC
Confidence 78888889999999999999999753 2222210 011111100 000 00 01111111
Q ss_pred Cch-hhhc-cCCceeEEeeeee-eeeeCchhhhhhccCCeEEEEE-------------eCCCCe--EEEEEeCCCCeEEE
Q 007533 458 DCK-SAKL-YGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DETSQR--MEIVELPNHPYFIG 519 (599)
Q Consensus 458 ~s~-l~~i-yg~~~~I~erHrH-rYeVnp~~v~~le~~Gl~~sa~-------------s~dg~~--vE~iE~~~hpffvG 519 (599)
.+. +..+ -+....++..|.+ ||.++++.+.+++..+..+ -+ +++|.. |.+|-.++.. ++|
T Consensus 130 ~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlg 207 (238)
T cd01740 130 DSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLG 207 (238)
T ss_pred CCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEE
Confidence 122 2221 2233457778875 7888888888887777654 22 356653 8888888887 569
Q ss_pred EcccCCCcCCC
Q 007533 520 VQFHPEYKSRP 530 (599)
Q Consensus 520 vQFHPE~ss~p 530 (599)
...|||....+
T Consensus 208 lMphPer~~~~ 218 (238)
T cd01740 208 MMPHPERAVEP 218 (238)
T ss_pred EcCChHHcccc
Confidence 99999998877
No 89
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.19 E-value=2.9e-10 Score=110.90 Aligned_cols=161 Identities=18% Similarity=0.330 Sum_probs=95.8
Q ss_pred CCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-----chhHHHH
Q 007533 306 GLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKIL 380 (599)
Q Consensus 306 ~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r-----g~eg~i~ 380 (599)
.++.++...+++|+.+|.+.. +|.. | ++|.++||+|+|||-.+. ...|+..
T Consensus 3 ALQG~~~EH~~~l~~lg~~~~------~Vr~-----------~-------~dL~~~dgLIiPGGESTti~~ll~~~gL~~ 58 (188)
T PF01174_consen 3 ALQGAFREHIRMLERLGAEVV------EVRT-----------P-------EDLEGLDGLIIPGGESTTIGKLLRRYGLFE 58 (188)
T ss_dssp SSSSSHHHHHHHHHHTTSEEE------EE-S-----------G-------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHH
T ss_pred ccccChHHHHHHHHHcCCCeE------EeCC-----------H-------HHHccCCEEEECCCcHHHHHHHHHHcCCHH
Confidence 356678888999999998762 2322 1 468899999999986552 1257888
Q ss_pred HHHHHHHcC-CCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCccccCceeeEEecCCc
Q 007533 381 AAKYAREHR-IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDC 459 (599)
Q Consensus 381 aik~are~~-iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~GgtmrLG~~~v~l~~~~s 459 (599)
.++.+..++ +|+||+|.||-+|+ .++.+ ++...||.-++.+..+
T Consensus 59 ~l~~~~~~g~~Pv~GTCAGlIlLa----~~v~~-----------------------------~~q~~Lg~ldi~V~RN-- 103 (188)
T PF01174_consen 59 PLREFIRSGSKPVWGTCAGLILLA----KEVEG-----------------------------QGQPLLGLLDITVRRN-- 103 (188)
T ss_dssp HHHHHHHTT--EEEEETHHHHHHE----EEECS-----------------------------SCCTSS--EEEEEETT--
T ss_pred HHHHHHHcCCCceeehhHHHHHhh----hhhhh-----------------------------cccccccceeEEEEcc--
Confidence 898888887 99999999999983 44421 0122344555555554
Q ss_pred hhhhccCCceeEEeeeeeeeeeCc----------------hhhhhh-ccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEcc
Q 007533 460 KSAKLYGNRTFIDERHRHRYEVNP----------------DMIARL-ENAGLSFTGKDETSQRMEIVELPNHPYFIGVQF 522 (599)
Q Consensus 460 ~l~~iyg~~~~I~erHrHrYeVnp----------------~~v~~l-e~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQF 522 (599)
.||. +..+|+..- .++..+ .+.+..+++..+ |. +-+++-. + ++|+-|
T Consensus 104 ----afGr-------Q~~SFe~~l~i~~~~~~~~avFIRAP~I~~v~~~~~v~vla~~~-g~-iVav~qg--n-~latsF 167 (188)
T PF01174_consen 104 ----AFGR-------QLDSFEADLDIPGLGEPFPAVFIRAPVIEEVGSPEGVEVLAELD-GK-IVAVRQG--N-ILATSF 167 (188)
T ss_dssp ----TTCS-------SSCEEEEEEEETTTESEEEEEESS--EEEEE--TTTEEEEEEET-TE-EEEEEET--T-EEEESS
T ss_pred ----cccc-------chhcEEEEEEeecCCCcEEEEEcCCcEEEEeecccccccccccc-cc-eEEEEec--C-EEEEEe
Confidence 3442 222222211 112222 125677777654 43 4455532 3 689999
Q ss_pred cCCCcCC-CCCchHHHHHHHHHHh
Q 007533 523 HPEYKSR-PGKPSPLFLGLIAAAC 545 (599)
Q Consensus 523 HPE~ss~-p~~p~pLF~~Fv~aa~ 545 (599)
|||.+.. . ++.+.|++.+.
T Consensus 168 HPELT~D~~----r~H~yFl~~v~ 187 (188)
T PF01174_consen 168 HPELTDDDT----RIHEYFLEMVV 187 (188)
T ss_dssp -GGGSSTHC----HHHHHHHHHHC
T ss_pred CCcccCchh----HHHHHHHHHhh
Confidence 9999986 4 67777877653
No 90
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.16 E-value=1.8e-09 Score=119.92 Aligned_cols=305 Identities=21% Similarity=0.265 Sum_probs=156.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCC---------Ccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDL---------GNY 74 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldl---------g~y 74 (599)
||||| .=|+.||=++++.|.+.|+.+|++|...|-= .|+= ..+|+.||+|.|-.. --+
T Consensus 1 ~~I~G-T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~--------~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVVG-TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ--------NMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc--------cccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 56775 5699999999999999999999999988832 1211 245666776654110 012
Q ss_pred ccccCCCCCCCCc-----ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCc
Q 007533 75 ERFMDIKLTRDNN-----ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGG 149 (599)
Q Consensus 75 erfl~~~l~~~~n-----~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~gg 149 (599)
++---+-|....+ +..|+.+.....++ |.... .+..-+.|++.+.+.+ .+.|++|||=.|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~~~a~~----~~~~~---~~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQE----YYKNK---VDFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCcCCHHH----Hhhhh---hHHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 2211111211101 11222111111111 11100 1234566777777775 368999999988
Q ss_pred ccccc----ccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcC-CCcccEEEEecCCCCCh
Q 007533 150 TIGDI----ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ-GLTPNILACRSTVALDD 224 (599)
Q Consensus 150 tvgdi----es~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~-Gi~pd~iv~R~~~~l~~ 224 (599)
..-|+ +.....+-++.+.. .+++| +. +...+-. --+-+.++.++.. ++...++|+-.-.+-.+
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~a-----pVILV----~d-~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANA-----DAILV----AD-IDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCC-----CEEEE----Ee-CCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 77664 12223344444322 24444 11 1111011 1222334444432 25566677654433221
Q ss_pred hhh---hccccCCCCCCCCeeeeCC-CCCccchhHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHhhhc-CCCCceEEE
Q 007533 225 NVK---GKLSQFCHVPEQNIITLYD-VPNIWHIPLLLRKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD-GLHEPVRIA 299 (599)
Q Consensus 225 ~~~---~Kislfc~v~~~~Vi~~~d-v~tiy~vPl~L~g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~-~~~~~v~Ia 299 (599)
..+ +.+.-++.++ |+++.= .++. +|. .++.++...+. .....++||
T Consensus 201 ~~~~~~~~l~e~~gip---vLG~ip~~~~l--l~~------------------------~e~~~~~~~~~~~~~~~~~Ia 251 (475)
T TIGR00313 201 VLKSGIEKLEELTGIP---VLGVLPYDENL--FPE------------------------EDSLVIQERRSRGNAKSIRIG 251 (475)
T ss_pred HHHHHHHHHHHhhCCC---EEEEecCCCcC--CCh------------------------HHhhhHHhhhccCCCCCcEEE
Confidence 122 2223333333 222210 0011 110 11111111111 112238999
Q ss_pred EEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-----
Q 007533 300 MVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----- 374 (599)
Q Consensus 300 iVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg----- 374 (599)
|+ +|.....-| =+++|++. + .+.|++.. +.|.++|+|++|||+-...
T Consensus 252 v~-~~~~~~nf~--~~~~L~~~--~-----~~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~~l 303 (475)
T TIGR00313 252 VV-RLPRISNFT--DFEPLRYE--A-----FVKFLDLD------------------DSLTGCDAVIIPGSKSTIADLYAL 303 (475)
T ss_pred EE-cCCcccCcc--ChHHHhhC--C-----CeEEeCCc------------------cccccCCEEEECCcchHHHHHHHH
Confidence 99 655443223 56788777 2 24566543 2366899999999984422
Q ss_pred -hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 375 -VQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 375 -~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
..++...++.+.+++.|+||||.|||+|.-.
T Consensus 304 ~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 304 KQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred HhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 1346788888888999999999999999644
No 91
>PRK00784 cobyric acid synthase; Provisional
Probab=99.13 E-value=2.2e-09 Score=119.64 Aligned_cols=86 Identities=26% Similarity=0.376 Sum_probs=61.4
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHH-cCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~h-aG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
.+++|||+ +|.... ++ .=+++|+. +|+++. ++++. +.+.++|||+||||+..
T Consensus 250 ~~~~i~v~-~~~~a~-~f-~nl~~l~~~~g~~v~------~~s~~------------------~~l~~~d~lilpGg~~~ 302 (488)
T PRK00784 250 GALRIAVI-RLPRIS-NF-TDFDPLRAEPGVDVR------YVRPG------------------EPLPDADLVILPGSKNT 302 (488)
T ss_pred CceEEEEE-eCCCcC-Cc-cChHHHhhcCCCeEE------EECCc------------------cccccCCEEEECCccch
Confidence 35899999 665332 33 55788887 887653 34431 23568999999999743
Q ss_pred Cch------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 373 RGV------QGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 373 rg~------eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
... .++...++.+.++++|+||||.|||+|+-.+
T Consensus 303 ~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 303 IADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 211 2467788888899999999999999997553
No 92
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.10 E-value=9.7e-11 Score=117.16 Aligned_cols=179 Identities=20% Similarity=0.288 Sum_probs=105.5
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhH--HHHHHHHHHHc--
Q 007533 313 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG--KILAAKYAREH-- 388 (599)
Q Consensus 313 SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg--~i~aik~are~-- 388 (599)
|.++.++.+|+++ +.+.+-.++++ ....|+.++||++|||.-.++.-. .......+.|.
T Consensus 81 SYVK~aEsgGARV---iPli~nepEe~--------------lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nD 143 (340)
T KOG1559|consen 81 SYVKLAESGGARV---IPLIYNEPEEI--------------LFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERND 143 (340)
T ss_pred HHHHHHHcCCceE---EEEecCCcHHH--------------HHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccC
Confidence 8899999999987 34444444322 235688999999999977776522 22233444444
Q ss_pred ---CCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCC--CcCcCCCccccCceeeEEecCCchhhh
Q 007533 389 ---RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG--SKTHMGGTMRLGSRRTYFQIKDCKSAK 463 (599)
Q Consensus 389 ---~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~--~~~~~GgtmrLG~~~v~l~~~~s~l~~ 463 (599)
..|++|||||+.+|.+-...+-.-+. .||... .-|+-+ ...+.-+||-- .+.+ .++.+
T Consensus 144 aGehFPvyg~CLGFE~lsmiISqnrdile-----~~d~vd-----~AssLqF~~nvn~~~t~FQ-----rFPp--ELLkk 206 (340)
T KOG1559|consen 144 AGEHFPVYGICLGFELLSMIISQNRDILE-----RFDAVD-----VASSLQFVGNVNIHGTMFQ-----RFPP--ELLKK 206 (340)
T ss_pred CccccchhhhhhhHHHHHHHHhcChhHHH-----hhcccc-----cccceeeecccceeehhHh-----hCCH--HHHHH
Confidence 38999999999999887664321111 121110 001110 11222334321 1111 35555
Q ss_pred ccCCceeEEeeeeeeeeeCchhhh---hhccCCeEEEEEeCCCC---eEEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 464 LYGNRTFIDERHRHRYEVNPDMIA---RLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 464 iyg~~~~I~erHrHrYeVnp~~v~---~le~~Gl~~sa~s~dg~---~vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
+-. ... ..++|+|.+.|+..+ .| ..-+.++-++.|++ .|..++.+.+| +.|+|||||+..-.
T Consensus 207 L~~-dcL--vmq~Hk~gisp~nF~~N~~L-s~FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafE 274 (340)
T KOG1559|consen 207 LST-DCL--VMQNHKFGISPKNFQGNPAL-SSFFNILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFE 274 (340)
T ss_pred hcc-chh--eeeccccccchhhccCCHHH-HHHHhheeeecCCCceEEEEeecceecc-ceeeeecCccCccc
Confidence 532 222 357799999886542 23 23355665655553 47888899999 56999999987643
No 93
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.97 E-value=4.5e-08 Score=107.51 Aligned_cols=291 Identities=18% Similarity=0.259 Sum_probs=154.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc-cccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp-yln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~ 79 (599)
|+=|||||- =||.||=.+++.|-+.|+.+|++|...|.-| |+ || ..|.. -.+
T Consensus 1 m~~~~i~~~-~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~-----~~~~~-------------------~~g 53 (433)
T PRK13896 1 MKGFVLGGT-SSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DP-----SHHEA-------------------VAG 53 (433)
T ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CH-----HHHHH-------------------HhC
Confidence 666788865 6999999999999999999999999999877 53 43 33332 222
Q ss_pred CCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccc
Q 007533 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM 157 (599)
Q Consensus 80 ~~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit--~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~ 157 (599)
... .| +=||.. +.|++...+ ...|++|||==|=+-|=+..
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~dg~~~ 95 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLYDGDVS 95 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccccCCCC
Confidence 211 01 113322 224333321 13799999953333353323
Q ss_pred hHHHHHHHhhhHcCCCCEEEEeeeeeeeecC-CCccccCCchhhhhhhhc---CCCcccEEEEecCCCC--C----hhhh
Q 007533 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRG---QGLTPNILACRSTVAL--D----DNVK 227 (599)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~-~~e~ktkptq~sv~~Lrs---~Gi~pd~iv~R~~~~l--~----~~~~ 227 (599)
-..+-++++... +++ +..+ .|-.=--+|=.++.++.. .|+...++|+-...+- . +...
T Consensus 96 s~adla~~l~~P-----viL-------Vv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~ 163 (433)
T PRK13896 96 STAMVAEALDLP-----VVL-------VVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDALP 163 (433)
T ss_pred CHHHHHHHHCCC-----EEE-------EEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhhh
Confidence 344445544322 111 2221 121111122233344433 4899999998876542 1 1122
Q ss_pred hccccCCCCCCCCeeeeCCCCCccchhHH-------HHHHHHHHHHHcCCCCCCCchhhHHHHHHHhh-------h-cCC
Q 007533 228 GKLSQFCHVPEQNIITLYDVPNIWHIPLL-------LRKAHEAIFKVLNLQGTTKEPLLKEWTSRAEI-------C-DGL 292 (599)
Q Consensus 228 ~Kislfc~v~~~~Vi~~~dv~tiy~vPl~-------L~g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~-------~-~~~ 292 (599)
+.+..+..++...-+.+ ++| |+-|. ++...+.+.+.++++ .-.++... . ...
T Consensus 164 ~~i~vlG~lP~~~~~~~---~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~---------~l~~~a~~~~~~~~~~~~~~ 230 (433)
T PRK13896 164 DELTYFGRIPPRDDLEI---PDR-HLGLHMGSEAPLDDDALDEAAEHIDAE---------RLAAVAREPPRPEPPEEAPA 230 (433)
T ss_pred hcCceeEecccCCCCCC---CCC-CcCCCcchhhccHHHHHHHHHHhCCHH---------HHHHHhhCCCCccccccccC
Confidence 22445555555443332 233 12111 001111122222221 00111100 0 011
Q ss_pred CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 293 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 293 ~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
...++|||.-| -.+.=-|..-+++|+.+ +++. .+++ +.+ +.+.++|+|++|||+-.
T Consensus 231 ~~~~~iavA~D-~AF~FyY~enl~~L~~~-aelv------~fSP--l~~--------------~~lp~~D~l~lpGG~~e 286 (433)
T PRK13896 231 TGDPTVAVARD-AAFCFRYPATIERLRER-ADVV------TFSP--VAG--------------DPLPDCDGVYLPGGYPE 286 (433)
T ss_pred CCCCeEEEEEc-CccceeCHHHHHHHHhc-CcEE------EEcC--CCC--------------CCCCCCCEEEeCCCchh
Confidence 22379999833 23433577888999998 6542 2222 211 23568999999999855
Q ss_pred Cch-----hHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 373 RGV-----QGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 373 rg~-----eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
-.. .+....++.+.+++.|++|||-|||+|+-.
T Consensus 287 ~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 287 LHADALADSPALDELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred hHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 321 223478888888999999999999999643
No 94
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.80 E-value=7.7e-08 Score=99.15 Aligned_cols=196 Identities=21% Similarity=0.277 Sum_probs=103.7
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC--C
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~--r 373 (599)
+||+|+= +- ....-.....||+.+|+++.. .|+ .++-... ..|+++|+|++||||+. .
T Consensus 2 pkV~Vl~-~p-GtNce~e~~~A~~~aG~~~~~----v~~--~dl~~~~------------~~l~~~~~lvipGGFS~gD~ 61 (259)
T PF13507_consen 2 PKVAVLR-FP-GTNCERETAAAFENAGFEPEI----VHI--NDLLSGE------------SDLDDFDGLVIPGGFSYGDY 61 (259)
T ss_dssp -EEEEEE--T-TEEEHHHHHHHHHCTT-EEEE----EEC--CHHHTTS--------------GCC-SEEEE-EE-GGGGT
T ss_pred CEEEEEE-CC-CCCCHHHHHHHHHHcCCCceE----EEE--Eeccccc------------CchhhCcEEEECCccCcccc
Confidence 6888883 32 233667889999999998754 233 2221110 36899999999999854 2
Q ss_pred chh------------HHHHHHHHHHHc-CCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCc
Q 007533 374 GVQ------------GKILAAKYAREH-RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH 440 (599)
Q Consensus 374 g~e------------g~i~aik~are~-~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~ 440 (599)
--. ....+++...+. +.|+||||-|+|+|+ +.| ++. .....+ ....+.+++...
T Consensus 62 l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~-~~G--llp--~~~~~~-----~~~~~~L~~N~s--- 128 (259)
T PF13507_consen 62 LRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV-ELG--LLP--GGEIKD-----SEQSPALTPNAS--- 128 (259)
T ss_dssp TSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC-CCC--CST--T-----------TT--EEE--TT---
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH-HhC--cCC--Cccccc-----cCCCcEEcCCCC---
Confidence 111 235667777777 999999999999994 333 221 100000 112223332211
Q ss_pred CCCccccCceeeEEe--cCC-ch-hhhccCCceeEEeeeee-eeee-CchhhhhhccCCeEEEEEeC-------------
Q 007533 441 MGGTMRLGSRRTYFQ--IKD-CK-SAKLYGNRTFIDERHRH-RYEV-NPDMIARLENAGLSFTGKDE------------- 501 (599)
Q Consensus 441 ~GgtmrLG~~~v~l~--~~~-s~-l~~iyg~~~~I~erHrH-rYeV-np~~v~~le~~Gl~~sa~s~------------- 501 (599)
+ |+=.+-+.+. +.+ +. ++.+ ....+...|.+ ||.+ +++..+.|++.|..+.-+..
T Consensus 129 --~--~fe~rwv~~~v~~~s~~~~~~~~--~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NP 202 (259)
T PF13507_consen 129 --G--RFESRWVNLVVNENSPSIFLRGL--EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNP 202 (259)
T ss_dssp --S--S-EEEEEEEEE--SSTTCCCTTT--TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSS
T ss_pred --C--CeEEEEEEEEEecCCcceecCCC--CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCC
Confidence 1 1111112221 221 11 1222 12234445554 5777 67788889888887766543
Q ss_pred CCC--eEEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 502 TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 502 dg~--~vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+|. -|.+|-.++.. ++|...|||....+.
T Consensus 203 NGS~~~IAGics~~Gr-vlglMpHPEr~~~~~ 233 (259)
T PF13507_consen 203 NGSVNNIAGICSPDGR-VLGLMPHPERAFEPW 233 (259)
T ss_dssp S--GGGEEEEE-TTSS-EEEESSBCCGTTCCC
T ss_pred CCCccceeEEEcCCCC-EEEEcCChHHhCchh
Confidence 332 38999998888 569999999887664
No 95
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.73 E-value=6.4e-07 Score=108.45 Aligned_cols=220 Identities=19% Similarity=0.228 Sum_probs=124.3
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
.++|++|+ .+-. ...-.....|++.+|+.+.. .|+. +|....+.+ ........|+++|+|++||||+.-
T Consensus 976 ~kpkvaIl-~~pG-tNce~d~a~Af~~aG~~~~~----v~~~--dl~~~~i~~---s~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIP-VFPG-TNSEYDSAKAFEKEGAEVNL----VIFR--NLNEEALVE---SVETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEE-ECCC-CCCHHHHHHHHHHcCCceEE----EEEe--cCccccccc---chhhhhcccccCcEEEEcCccCcc
Confidence 35899998 4432 34677889999999998533 3432 222211111 111112357999999999998542
Q ss_pred ----ch----------hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCC-CCCeeeeCCCCCc
Q 007533 374 ----GV----------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNT-KNPCVIFMPEGSK 438 (599)
Q Consensus 374 ----g~----------eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~-~~~vi~~mpe~~~ 438 (599)
+- .....+++...+.+.|+||||-|||+|+ ++| |-.. .++.+.+ ..| .++....
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~-~lG-----LlP~--~~~~~~~~~~p--~l~~N~s- 1113 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV-KSG-----LLPY--GNIEAANETSP--TLTYNDI- 1113 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH-HcC-----CCcC--ccccccccCCc--eeeecCC-
Confidence 11 2345566666678999999999999995 433 2110 0111100 111 1121110
Q ss_pred CcCCCccccCce--eeEEecCCchhhhcc--CCceeEEeeeee-eeeeCchhhhhhccCCeEEEEE-------------e
Q 007533 439 THMGGTMRLGSR--RTYFQIKDCKSAKLY--GNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------D 500 (599)
Q Consensus 439 ~~~GgtmrLG~~--~v~l~~~~s~l~~iy--g~~~~I~erHrH-rYeVnp~~v~~le~~Gl~~sa~-------------s 500 (599)
+ |+=.+ .+.+.++.|.+-.-+ |..-.|...|.- ||.++++.+++|+..|...+-+ +
T Consensus 1114 ---~---rf~~r~v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~N 1187 (1239)
T TIGR01857 1114 ---N---RHVSKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYN 1187 (1239)
T ss_pred ---C---CeEEeeeEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCC
Confidence 0 11111 122223223333333 222345556644 6888877788888888766554 4
Q ss_pred CCCCe--EEEEEeCCCCeEEEEcccCCCcCCCCC-------chHHHHHHHH
Q 007533 501 ETSQR--MEIVELPNHPYFIGVQFHPEYKSRPGK-------PSPLFLGLIA 542 (599)
Q Consensus 501 ~dg~~--vE~iE~~~hpffvGvQFHPE~ss~p~~-------p~pLF~~Fv~ 542 (599)
++|.. +++|-.++.. ++|..-|||....+.- ...+|.+.++
T Consensus 1188 PNGS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1188 PNGSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 55653 7888888887 5699999998765532 2567776653
No 96
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.71 E-value=5.8e-07 Score=110.14 Aligned_cols=197 Identities=18% Similarity=0.143 Sum_probs=116.9
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
.++|++|+ .+- ....-.....||+.+|+.+.. .|+. +|.... ..|.++++|++||||+.-
T Consensus 1034 ~~pkv~il-~~p-G~N~~~e~~~Af~~aG~~~~~----v~~~--dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAIL-REQ-GVNSHVEMAAAFDRAGFDAID----VHMS--DLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEE-ECC-CCCCHHHHHHHHHHcCCCeEE----EEee--cCcCCC------------CChhhCcEEEECCccCCc
Confidence 45789998 343 234677889999999998732 2332 443211 248899999999997552
Q ss_pred ch--h------------HHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCC-CccccCCCCCCCeeeeCCCCC
Q 007533 374 GV--Q------------GKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDA-NSTEFDPNTKNPCVIFMPEGS 437 (599)
Q Consensus 374 g~--e------------g~i~aik~ar-e~~iP~LGICLGmQll~iefgr~Vlgl~dA-~S~Ef~~~~~~~vi~~mpe~~ 437 (599)
.. . ....+++... +.+.++||||.|+|+|+ +++ .++ +.+ ++..+..+.....+..
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~-~lg-~l~--p~~~~~p~l~~N~s~rfesr----- 1164 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMS-NLK-EII--PGAEHWPRFVRNRSEQFEAR----- 1164 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHH-HhC-Ccc--CCCCCCCeEeecCCCCeEEe-----
Confidence 11 1 2234454433 56899999999999995 443 221 111 1111111111111110
Q ss_pred cCcCCCccccCceeeEEecCCch-hhhccCCceeEEeeeee-eeeeCchhhhhhccCCeEEEEE-------------eCC
Q 007533 438 KTHMGGTMRLGSRRTYFQIKDCK-SAKLYGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DET 502 (599)
Q Consensus 438 ~~~~GgtmrLG~~~v~l~~~~s~-l~~iyg~~~~I~erHrH-rYeVnp~~v~~le~~Gl~~sa~-------------s~d 502 (599)
| -.+.+.++.|. ++.+-|..-.++..|.+ ||.++++...+|++.|...+-+ +++
T Consensus 1165 -----~------~~~~v~~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPN 1233 (1290)
T PRK05297 1165 -----F------SLVEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPN 1233 (1290)
T ss_pred -----e------eEEEECCCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCC
Confidence 1 11222222233 33333333457778877 6777777777887888665544 456
Q ss_pred CCe--EEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 503 SQR--MEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 503 g~~--vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
|.. |++|-.++.. ++|...|||....+.
T Consensus 1234 GS~~~IaGi~s~dGr-vlglMpHPEr~~~~~ 1263 (1290)
T PRK05297 1234 GSPNGITGLTTADGR-VTIMMPHPERVFRTV 1263 (1290)
T ss_pred CChhcceEeECCCCC-EEEEcCChHHhcchh
Confidence 653 8888888888 569999999877654
No 97
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.60 E-value=1.9e-06 Score=105.21 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=115.5
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCC--C
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF--G 371 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGf--G 371 (599)
.++||||+ .+-. ...-.....||+.+|+.+.. .|+. +|.+.. ..|.+++||++|||| |
T Consensus 1036 ~~pkVaVl-~~pG-tN~~~e~~~Af~~aGf~~~~----V~~~--dl~~~~------------~~L~~~~glv~pGGFSyG 1095 (1307)
T PLN03206 1036 SKPKVAII-REEG-SNGDREMAAAFYAAGFEPWD----VTMS--DLLNGR------------ISLDDFRGIVFVGGFSYA 1095 (1307)
T ss_pred CCCeEEEE-ECCC-CCCHHHHHHHHHHcCCceEE----EEee--eccccc------------ccccceeEEEEcCcCCCc
Confidence 46899999 3432 33677889999999998732 3333 443211 248899999999998 4
Q ss_pred CCchh------------HHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccCCCccc---cCCCCCCCeeeeCCC
Q 007533 372 NRGVQ------------GKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTE---FDPNTKNPCVIFMPE 435 (599)
Q Consensus 372 ~rg~e------------g~i~aik~ar-e~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~E---f~~~~~~~vi~~mpe 435 (599)
|.--. ....+++... +.+.++||||.|+|+|+ ++| ++ +.+.... -..+...| .++..
T Consensus 1096 D~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~-~lg--ll--Pg~~~~~~~~~~~~e~~p--~l~~N 1168 (1307)
T PLN03206 1096 DVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMA-LLG--WV--PGPQVGGGLGAGGDPSQP--RFVHN 1168 (1307)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHH-HcC--CC--CCCccccccccccccCCc--eeeec
Confidence 43111 2334455555 45899999999999995 332 21 2111000 00001111 11111
Q ss_pred CCcCcCCCccccCce--eeEEecCCch-hhhccCCceeEEeeeee-eeeeC-chhhhhhccCCeEEEEE-----------
Q 007533 436 GSKTHMGGTMRLGSR--RTYFQIKDCK-SAKLYGNRTFIDERHRH-RYEVN-PDMIARLENAGLSFTGK----------- 499 (599)
Q Consensus 436 ~~~~~~GgtmrLG~~--~v~l~~~~s~-l~~iyg~~~~I~erHrH-rYeVn-p~~v~~le~~Gl~~sa~----------- 499 (599)
.-+ |+=.+ .+.+.+..|. ++.+-|..-.++..|.| ||.+. ++...+|+..|...+-+
T Consensus 1169 -----~s~--rfesr~v~v~V~~s~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~y 1241 (1307)
T PLN03206 1169 -----ESG--RFECRFTSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQY 1241 (1307)
T ss_pred -----CCC--CeEEeceEEEECCCCChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCC
Confidence 001 11111 2233232233 33333333457778877 44544 55677777777665544
Q ss_pred --eCCCCe--EEEEEeCCCCeEEEEcccCCCcCCCC
Q 007533 500 --DETSQR--MEIVELPNHPYFIGVQFHPEYKSRPG 531 (599)
Q Consensus 500 --s~dg~~--vE~iE~~~hpffvGvQFHPE~ss~p~ 531 (599)
+++|.. |++|-.++.. ++|...|||....+.
T Consensus 1242 P~NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~~~~ 1276 (1307)
T PLN03206 1242 PFNPNGSPLGIAALCSPDGR-HLAMMPHPERCFLMW 1276 (1307)
T ss_pred CCCCCCChhhceeeECCCCC-EEEEcCCHHHhhhhh
Confidence 456654 8888888888 469999999876654
No 98
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.59 E-value=7.1e-07 Score=85.47 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=64.3
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcc--eeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC-
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 373 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~--~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r- 373 (599)
.|+++ .++.++...++.++.+.++. .+++.+.-+... +++.++||+++|||....
T Consensus 13 VIGVL----ALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~------------------~D~aq~DaLIIPGGEST~m 70 (226)
T KOG3210|consen 13 VIGVL----ALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTK------------------NDLAQCDALIIPGGESTAM 70 (226)
T ss_pred EEeee----ehhhHHHHHHHHHHHhhccCcceEEEEEEeecCH------------------HHHhhCCEEEecCCchhHH
Confidence 36666 57779999999999887777 555555554431 578999999999987653
Q ss_pred ----chhHHHHHHHHHHHcC-CCEEEEehhHHHHHHHh
Q 007533 374 ----GVQGKILAAKYAREHR-IPYLGICLGMQVAVIEF 406 (599)
Q Consensus 374 ----g~eg~i~aik~are~~-iP~LGICLGmQll~ief 406 (599)
...|+...+.....+. +|+||.|.||.+|+-..
T Consensus 71 slia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql 108 (226)
T KOG3210|consen 71 SLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQL 108 (226)
T ss_pred HHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhh
Confidence 2245555566666666 99999999999997543
No 99
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.58 E-value=1.1e-07 Score=93.77 Aligned_cols=83 Identities=28% Similarity=0.335 Sum_probs=60.7
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc---
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 374 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg--- 374 (599)
|+|+ +|.... ++.|+.++++..|+++.. ++.. +.+.++|+|++|||+....
T Consensus 1 ~~~~-~y~~~g-N~~~l~~~~~~~G~~~~~------~~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPDIS-NFTDLDPLAREPGVDVRY------VEVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCCcc-CHHHHHHHHhcCCceEEE------EeCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 4566 686543 789999999999987633 3322 1256789999999974321
Q ss_pred ---hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 375 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 375 ---~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
..++...++.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 12466778888889999999999999996553
No 100
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.47 E-value=2.4e-06 Score=104.73 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=110.2
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
.++|+||+ .+-. ...-.....||+.+|+.+.. .|+. +|.... ..|++++||++||||+.-
T Consensus 1054 ~~p~vail-~~pG-~N~~~e~~~Af~~aGf~~~~----v~~~--dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAIL-REQG-VNGDREMAAAFDRAGFEAWD----VHMS--DLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEE-ECCC-CCCHHHHHHHHHHhCCCcEE----EEEe--ccccCC------------cchhheeEEEEcCCCCCc
Confidence 45899999 3432 33677889999999998533 3332 332211 147889999999998552
Q ss_pred ch--------------hHHHHHHHHHH-HcCCCEEEEehhHHHHHHHhccccccccC-CC-ccccCCCCCCCeeeeCCCC
Q 007533 374 GV--------------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRD-AN-STEFDPNTKNPCVIFMPEG 436 (599)
Q Consensus 374 g~--------------eg~i~aik~ar-e~~iP~LGICLGmQll~iefgr~Vlgl~d-A~-S~Ef~~~~~~~vi~~mpe~ 436 (599)
.. .....+++.+. +.+.++||||.|+|+|+-+. ||-. +. ..-|..+........
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~-----gllp~~~~~p~l~~N~s~~fe~r---- 1184 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLL-----EWIPGTENWPHFVRNNSERFEAR---- 1184 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHh-----CcCCCCCCCceeeecCCCCeEEe----
Confidence 11 12334454444 66899999999999997332 2221 10 000111111111110
Q ss_pred CcCcCCCccccCceeeEEecCCch-hhhccCCceeEEeeeee-eee-eCchhhhhhccCCeEEEEE-------------e
Q 007533 437 SKTHMGGTMRLGSRRTYFQIKDCK-SAKLYGNRTFIDERHRH-RYE-VNPDMIARLENAGLSFTGK-------------D 500 (599)
Q Consensus 437 ~~~~~GgtmrLG~~~v~l~~~~s~-l~~iyg~~~~I~erHrH-rYe-Vnp~~v~~le~~Gl~~sa~-------------s 500 (599)
| -.+.+.+..|. ++.+-|..-.++..|.+ ||. .+++...++++.|...+-+ +
T Consensus 1185 ------~------~~~~v~~s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~N 1252 (1310)
T TIGR01735 1185 ------V------ASVRVGESPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLN 1252 (1310)
T ss_pred ------e------eEEEECCCCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCC
Confidence 1 11222222233 33332333346667765 443 4556666777777655444 4
Q ss_pred CCCCe--EEEEEeCCCCeEEEEcccCCCcCCC
Q 007533 501 ETSQR--MEIVELPNHPYFIGVQFHPEYKSRP 530 (599)
Q Consensus 501 ~dg~~--vE~iE~~~hpffvGvQFHPE~ss~p 530 (599)
++|.. |.+|-.++.. ++|...|||...++
T Consensus 1253 PNGS~~~IaGi~s~dGr-vl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1253 PNGSPGGIAGITSCDGR-VTIMMPHPERVFRA 1283 (1310)
T ss_pred CCCChhcceEeECCCCC-EEEEcCCHHHhhhH
Confidence 56653 7788888877 46999999876654
No 101
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.45 E-value=3.4e-07 Score=101.75 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=54.0
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC-Cc
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~-rg 374 (599)
+||+|+ +..|+.+||++.+.. .+.+.|++.. +.+.++|+||+|||.-. .+
T Consensus 1 m~iGvl--------al~sv~~al~~lg~~---~~~vv~~~~~------------------~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 1 MEIGLL--------DIKGSLPCFENFGNL---PTKIIDENNI------------------KEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred CEEEEE--------ehhhHHHHHHHhcCC---CcEEEEeCCh------------------HHhccCCEEEECCCchhhcc
Confidence 478888 567899999998862 1234565431 46789999999998522 12
Q ss_pred --hhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 375 --VQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 375 --~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
.++...+++ +.++|+||||.|||+|+-.
T Consensus 52 ~l~~~l~~~i~---~~g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEIL---NFDGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHHH---HcCCeEEEEcHHHHhcccc
Confidence 134444443 3489999999999999644
No 102
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.41 E-value=6e-07 Score=88.80 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC---c---hhHHHHHHH
Q 007533 310 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---G---VQGKILAAK 383 (599)
Q Consensus 310 aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r---g---~eg~i~aik 383 (599)
-|...+++|+.+|+++. +++... + +.+.++|+|+||||+... . ..++..+++
T Consensus 12 ~y~e~~~~l~~~G~~v~------~~s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAELV------PFSPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEEE------EECCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 57788999999997653 344310 0 234569999999986442 1 135778899
Q ss_pred HHHHcCCCEEEEehhHHHHHHHh
Q 007533 384 YAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 384 ~are~~iP~LGICLGmQll~ief 406 (599)
.+.++++|++|||.|||+|.-..
T Consensus 70 ~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHHHh
Confidence 88899999999999999997554
No 103
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.20 E-value=0.00045 Score=75.60 Aligned_cols=195 Identities=22% Similarity=0.211 Sum_probs=109.3
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc-CCCEEEeCCCCCCC-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 373 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIlVPGGfG~r- 373 (599)
+|||+.-| ..+.=-|..-++.|+.+|+++.- .+ -|.+ +.+. ++|+|.|||||-.-
T Consensus 246 ~rIAVA~D-~AF~FyY~~nl~~Lr~~GAelv~------FS--PL~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARD-AAFNFYYPENLELLREAGAELVF------FS--PLAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEec-chhccccHHHHHHHHHCCCEEEE------eC--CcCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 78999833 23333577899999999998732 22 2322 2344 69999999987552
Q ss_pred -----chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCCc-ccc
Q 007533 374 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT-MRL 447 (599)
Q Consensus 374 -----g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Ggt-mrL 447 (599)
..+.+...|+.+.+.++|++|=|-|+--|+-. |.+++. ..++-+-++|- ...|+.. +.|
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~-------le~~~G------~~~~M~Gvlp~--~~~m~~Rl~~l 367 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES-------LEDADG------DTYEMVGVLPG--STRMTKRLQAL 367 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh-------eeccCC------ceeeeeeeecc--chhhhhhhhcc
Confidence 33568889999999999999999999777432 222211 12233333332 2334444 346
Q ss_pred CceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCe--EEEEEeCCCCeEEEEcccCC
Q 007533 448 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR--MEIVELPNHPYFIGVQFHPE 525 (599)
Q Consensus 448 G~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~--vE~iE~~~hpffvGvQFHPE 525 (599)
|=+......++.+... |.+..=.|.|+-+....++. ..-+-....+|.. -+++... ..+|.=.|-=
T Consensus 368 GY~~~~~~~d~~~~~~--G~~irGHEFHyS~~~~~~~~-------~~a~~~~~g~g~~~~~~G~~~g---nv~asY~H~H 435 (451)
T COG1797 368 GYREAEAVDDTLLLRA--GEKIRGHEFHYSRLITEEDA-------EPAFRVRRGDGIDNGRDGYRSG---NVLASYLHLH 435 (451)
T ss_pred ceeEEEecCCcccccC--CceeeeeeeeeeecccCCcC-------ceeeeeecccCccccccceeeC---CeEEEEEeee
Confidence 6666666555322222 11222246665443333221 1111111111210 1222222 3668888887
Q ss_pred CcCCCCCchHHHHHHHHHH
Q 007533 526 YKSRPGKPSPLFLGLIAAA 544 (599)
Q Consensus 526 ~ss~p~~p~pLF~~Fv~aa 544 (599)
+.|.| ..+.+|+++|
T Consensus 436 ~~s~~----~~~~~~v~~~ 450 (451)
T COG1797 436 FASNP----AFAARFVAAA 450 (451)
T ss_pred cccCH----HHHHHHHHhh
Confidence 77776 5778888876
No 104
>PHA03366 FGAM-synthase; Provisional
Probab=97.97 E-value=0.00022 Score=88.00 Aligned_cols=91 Identities=20% Similarity=0.155 Sum_probs=62.3
Q ss_pred CCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 292 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 292 ~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
+..++||||+ .+- ....-.....|+..+|+.+.. .|+ .||... ..|++++||++||||+
T Consensus 1025 ~~~~prVaIl-~~p-G~N~~~e~~~Af~~aGf~~~~----v~~--~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVL-LLP-GCPGPHALLAAFTNAGFDPYP----VSI--EELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEE-ECC-CCCCHHHHHHHHHHcCCceEE----EEe--ecCCCC-------------CccccceEEEEcCCCC
Confidence 3457899999 343 234677899999999998643 222 344321 1288999999999986
Q ss_pred CCc-------h-------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 007533 372 NRG-------V-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 403 (599)
Q Consensus 372 ~rg-------~-------eg~i~aik~ar-e~~iP~LGICL-GmQll~ 403 (599)
... + +....+++... +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 631 1 22334555555 45899999997 999995
No 105
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.90 E-value=0.00034 Score=85.90 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 293 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 293 ~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
..++||||+ .+- ....-.....|++.+|+.+.. +.-.+|... +.|++++||+++|||+.
T Consensus 927 ~~~p~VaIl-~~p-G~N~~~e~~~Af~~aGf~~~~------v~~~dl~~~-------------~~l~~f~glv~~Ggfsy 985 (1202)
T TIGR01739 927 DPRHQVAVL-LLP-GQSVPHGLLAALTNAGFDPRI------VSITELKKT-------------DFLDTFSGLIIGGASGT 985 (1202)
T ss_pred CCCCeEEEE-eCC-CCCCHHHHHHHHHHcCCceEE------EEeccCCCC-------------CchhheEEEEEcCcCCC
Confidence 346789998 343 234677889999999998633 222344221 23678899999999865
Q ss_pred Cch--------------hHHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 007533 373 RGV--------------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 403 (599)
Q Consensus 373 rg~--------------eg~i~aik~ar-e~~iP~LGICL-GmQll~ 403 (599)
... ....++++... +.+.+.||||- |+|+|+
T Consensus 986 ~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 986 LDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred CccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 321 12333454444 45899999997 999995
No 106
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.89 E-value=5.7e-05 Score=63.20 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch----hHHHHHHHHH
Q 007533 310 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYA 385 (599)
Q Consensus 310 aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~----eg~i~aik~a 385 (599)
.+.+..++|+.+++.+.+ +......... ......+|+|++|||+..+.. ..+++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEE------EcCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 467888999999855433 4433221100 024678999999999877543 5678888888
Q ss_pred HHcCCCEEEEehhHHHH
Q 007533 386 REHRIPYLGICLGMQVA 402 (599)
Q Consensus 386 re~~iP~LGICLGmQll 402 (599)
.++++|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 89999999999999999
No 107
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.88 E-value=0.00015 Score=76.09 Aligned_cols=208 Identities=17% Similarity=0.256 Sum_probs=105.0
Q ss_pred CceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-ccCCchhhhHHHHhc--cCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKLL--KGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~~~~p~~y~~a~~~L--~~~DGIlVPGG 369 (599)
..++|+|+ +--..+ +.=..+.+.|..... .|++.|+....-...+ ..+..++|..-++.+ ..+||+||+|.
T Consensus 33 rpL~I~Il-NLMP~K~~TE~Q~lrlL~~tpl----qv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 33 RPLKIGIL-NLMPDKEETERQFLRLLSNTPL----QVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp --EEEEEE----SSHHHHHHHHHHHCCSSSS-----EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred cceEEEEE-ecccchHHHHHHHHHHhcCCCC----ceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 46899999 333221 122244444444433 3455566433222111 111222333334444 58999999998
Q ss_pred CCCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHH-hccccccccCCCccccCCCCCCCeeeeCCCCCcCcC
Q 007533 370 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE-FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 441 (599)
Q Consensus 370 fG~r-------g~eg~i~aik~are~~iP~LGICLGmQll~ie-fgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~ 441 (599)
|=.. -++.+...+.|++++..+.|.||.|.|.+... +|-+...+ ++
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l--------------------~~------ 161 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPL--------------------PE------ 161 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEE--------------------EE------
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccC--------------------CC------
Confidence 6442 34678899999999999999999999996544 33221111 00
Q ss_pred CCccccCceeeEE-ecCCchhhhccCCceeEEeeeeeee-eeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEE
Q 007533 442 GGTMRLGSRRTYF-QIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 519 (599)
Q Consensus 442 GgtmrLG~~~v~l-~~~~s~l~~iyg~~~~I~erHrHrY-eVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvG 519 (599)
=.+|-++..+ .+.+++++++- . ....-| -|| +++.+.+. +..++.+++.+++.. +-++..+++.. +=
T Consensus 162 ---KlfGVf~~~~~~~~~pLl~Gfd-d--~f~~Ph-SR~t~i~~~~i~--~~~~L~vLa~s~~~G-~~l~~~~d~r~-vf 230 (298)
T PF04204_consen 162 ---KLFGVFEHRVLDPDHPLLRGFD-D--TFFAPH-SRYTEIDRDDIK--KAPGLEVLAESEEAG-VFLVASKDGRQ-VF 230 (298)
T ss_dssp ---EEEEEEEEEES-SS-GGGTT---S--EEEEEE-EEEEE--HHHHC--T-TTEEEEEEETTTE-EEEEEECCCTE-EE
T ss_pred ---cceeceeeeccCCCChhhcCCC-c--cccCCc-ccccCCCHHHHh--cCCCcEEEeccCCcc-eEEEEcCCCCE-EE
Confidence 0134455443 23336666653 1 222333 233 44444442 378999999987755 78888888874 57
Q ss_pred EcccCCCcCCCCCchHHHHHHHHHHhcch
Q 007533 520 VQFHPEYKSRPGKPSPLFLGLIAAACGQL 548 (599)
Q Consensus 520 vQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 548 (599)
+|.|||+... -|-..+.....+.+
T Consensus 231 i~GH~EYd~~-----TL~~EY~RD~~~gl 254 (298)
T PF04204_consen 231 ITGHPEYDAD-----TLAKEYRRDLAKGL 254 (298)
T ss_dssp E-S-TT--TT-----HHHHHHHHHHHCT-
T ss_pred EeCCCccChh-----HHHHHHHHHHhCCC
Confidence 9999999765 46667766666554
No 108
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.81 E-value=3.3e-05 Score=77.24 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=61.2
Q ss_pred CceEEEEEeecCCCcchHH-HHHHHHHHc-CCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYL-SILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 371 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~-SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG 371 (599)
...+|+++.-=....+.|. ++.++++.. |+++... .+.+ .+ . ..+.+.++|+|++|||--
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~----~~~~---~~-~----------~~~~l~~ad~I~l~GG~~ 91 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHL----HLFD---TE-D----------PLDALLEADVIYVGGGNT 91 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEE----eccC---cc-c----------HHHHHhcCCEEEECCchH
Confidence 4579999952222234444 788999999 8876432 1111 00 0 125789999999999621
Q ss_pred CC---ch--hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 372 NR---GV--QGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 372 ~r---g~--eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.+ .+ .++..+++.+.+++.|++|||.|||++.
T Consensus 92 ~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 92 FNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred HHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 11 11 2466778877788999999999999994
No 109
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.69 E-value=4.7e-05 Score=69.48 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=53.3
Q ss_pred EEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch--
Q 007533 298 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 375 (599)
Q Consensus 298 IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~-- 375 (599)
|++--..+....+...+.+.|+... . +.-+.++++... .|+ .++|.||+|||.-....
T Consensus 2 v~VY~g~g~~~~~~~~~~~~L~~~~-~------v~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~ 61 (114)
T cd03144 2 VLVYNGPGASPGSLKHLAELLRLYL-A------VSTVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRA 61 (114)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhhcc-c------eeeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHH
Confidence 3443333434456667788887754 2 223555554321 232 58999999996333221
Q ss_pred ---hHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007533 376 ---QGKILAAKYAREHRIPYLGICLGMQVA 402 (599)
Q Consensus 376 ---eg~i~aik~are~~iP~LGICLGmQll 402 (599)
.+ .++++...+++.|+||||+|.=++
T Consensus 62 L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 62 LNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 24 677888778899999999998877
No 110
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.63 E-value=0.00021 Score=69.85 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=43.9
Q ss_pred ccCCCEEEeCCCCCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccc
Q 007533 358 LKGADGILVPGGFGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 409 (599)
Q Consensus 358 L~~~DGIlVPGGfG~-------rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~ 409 (599)
...+||+||+|.+=. .-++.....+.|++++..|.||||.|+|++...+++-
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi 118 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGI 118 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCc
Confidence 578999999998643 1245688999999999999999999999998887764
No 111
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.62 E-value=5.8e-05 Score=72.10 Aligned_cols=51 Identities=31% Similarity=0.348 Sum_probs=42.4
Q ss_pred HhccCCCEEEeCCCCCCCc------hhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 356 KLLKGADGILVPGGFGNRG------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 356 ~~L~~~DGIlVPGGfG~rg------~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
+.+.++|+|+||||+-... ..++...|+.+.+++.|++|||-|||+|.-.+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 3578999999999976532 24678899999999999999999999997654
No 112
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.50 E-value=0.00028 Score=56.30 Aligned_cols=75 Identities=29% Similarity=0.364 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch----hHHHHHHHHHH
Q 007533 311 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYAR 386 (599)
Q Consensus 311 Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~----eg~i~aik~ar 386 (599)
+..+.++++..++.+.+ .+....... . .....++|+|++|||...... ...+..++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~----~~~~~~~~~--~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDV----VSPDGGPVE--S-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEE----EeCCCCccc--c-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 45678888888855433 222211110 0 024678999999999877543 45677787777
Q ss_pred HcCCCEEEEehhHHHH
Q 007533 387 EHRIPYLGICLGMQVA 402 (599)
Q Consensus 387 e~~iP~LGICLGmQll 402 (599)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
No 113
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.50 E-value=0.0016 Score=68.26 Aligned_cols=206 Identities=12% Similarity=0.166 Sum_probs=113.7
Q ss_pred CceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-ccCCchhhhHHHHh--ccCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKL--LKGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~~~~p~~y~~a~~~--L~~~DGIlVPGG 369 (599)
.+++|+|+ .--..+ +.=..+++.|...... +++.|+....-...+ ..+..++|-.-++. -..+||+||+|.
T Consensus 34 rpL~I~IL-NLMP~K~~TE~Q~lRlL~ntplq----v~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 34 RPLEILIL-NLMPKKIETENQFLRLLSNSPLQ----VNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred cceeEEEE-ecCCccHHHHHHHHHHhcCCCCc----eEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 46899999 343222 2333567777443333 344555433322211 11222233333333 368999999997
Q ss_pred CCC-------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCC
Q 007533 370 FGN-------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 442 (599)
Q Consensus 370 fG~-------rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~G 442 (599)
|=. .-++...+.+.|++++-...|.||.|.|.+...+- |++.- .++++
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~y----GI~K~---------------~l~~K------ 163 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFY----GIPKY---------------TLPEK------ 163 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHc----CCCcc---------------ccCCc------
Confidence 533 12567889999999999999999999999755432 22210 01110
Q ss_pred CccccCceeeEEecCCchhhhccCCcee-EEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEc
Q 007533 443 GTMRLGSRRTYFQIKDCKSAKLYGNRTF-IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 443 gtmrLG~~~v~l~~~~s~l~~iyg~~~~-I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQ 521 (599)
..|-++....+.+++++++- +... -..||. +++.+.+.. ..++.+++.+++.. +-++..+++..+ =+|
T Consensus 164 ---lfGVf~h~~~~~~pL~rGfd-d~f~~PhSR~t---~i~~~~i~~--~~~L~vla~s~e~G-~~l~~s~d~r~v-fi~ 232 (300)
T TIGR01001 164 ---LSGVYKHDIAPDSLLLRGFD-DFFLAPHSRYA---DFDAEDIDK--VTDLEILAESDEAG-VYLAANKDERNI-FVT 232 (300)
T ss_pred ---eEEeecCccCCCCccccCCC-CccccCCCCCC---CCCHHHHhc--CCCCeEEecCCCcc-eEEEEcCCCCEE-EEc
Confidence 01222211113324444442 1111 112332 355444432 47899999887655 778888887643 599
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHh
Q 007533 522 FHPEYKSRPGKPSPLFLGLIAAAC 545 (599)
Q Consensus 522 FHPE~ss~p~~p~pLF~~Fv~aa~ 545 (599)
-|||+.... |-..+.+...
T Consensus 233 GH~EYd~~T-----L~~EY~RD~~ 251 (300)
T TIGR01001 233 GHPEYDAYT-----LHQEYVRDIG 251 (300)
T ss_pred CCCccChhH-----HHHHHHHHHH
Confidence 999997653 4455554443
No 114
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=97.25 E-value=3.7e-05 Score=71.59 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=46.3
Q ss_pred EeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHH
Q 007533 178 IHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLL 257 (599)
Q Consensus 178 ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L 257 (599)
|-+---|.|..-|=-+ .+.+|..+++.++|||+..+.+++|+++.+|..|++.++|+++.++|||+ +.++|
T Consensus 50 IlvfTyP~IGNyGv~~--------~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTRa-Lt~~l 120 (131)
T PF00988_consen 50 ILVFTYPLIGNYGVNE--------EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTRA-LTRKL 120 (131)
T ss_dssp EEEESSSB--TT-B-G--------GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HHH-HHHHH
T ss_pred EEEEeccCCeEEcCCc--------ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHHH-HHHHH
Confidence 3333446665444332 45999999999999999999999999999999999999999999999995 66888
Q ss_pred H--HHHH
Q 007533 258 R--KAHE 262 (599)
Q Consensus 258 ~--g~~~ 262 (599)
| |.|+
T Consensus 121 R~~G~m~ 127 (131)
T PF00988_consen 121 REKGSMK 127 (131)
T ss_dssp HHH--EE
T ss_pred HhcCCce
Confidence 8 7654
No 115
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.71 E-value=0.0074 Score=57.11 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=38.0
Q ss_pred cCCCEEEeCCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg---~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|+|+||||.+... .......++++.++++|+.|||.|.++|+-
T Consensus 59 ~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 107 (166)
T TIGR01382 59 EEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLIS 107 (166)
T ss_pred HHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHh
Confidence 3689999999976422 245788899999999999999999999863
No 116
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.56 E-value=0.004 Score=62.80 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=43.8
Q ss_pred ccCCCEEEeCCCCCCC--------------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh--ccccccc
Q 007533 358 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNL 413 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r--------------g~eg~i~aik~are~~iP~LGICLGmQll~ief--gr~Vlgl 413 (599)
++++|+|++|||++.. ..+..+..++.+.++++|+.+||-|-++|+-+. |+++.+.
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~kGr~vT~~ 151 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTIG 151 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhccCCeEEcc
Confidence 5689999999998631 234678889999999999999999999987654 3455443
No 117
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.54 E-value=0.0042 Score=62.75 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=41.2
Q ss_pred ccCCCEEEeCCCCCC--------------CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh
Q 007533 358 LKGADGILVPGGFGN--------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 406 (599)
Q Consensus 358 L~~~DGIlVPGGfG~--------------rg~eg~i~aik~are~~iP~LGICLGmQll~ief 406 (599)
.+++|+|++|||+|. |..+....+++.+.++++|+..||-|-++|+-+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 568999999999874 2245688899999999999999999999986554
No 118
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.51 E-value=0.0075 Score=61.64 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=70.8
Q ss_pred hhhHHHHHHHhhhcCCCCceEEEEEeecCCCc---chHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhh
Q 007533 277 PLLKEWTSRAEICDGLHEPVRIAMVGKYTGLS---DAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK 352 (599)
Q Consensus 277 ~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~---DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~ 352 (599)
.-|..|..+...+-. ...||++| -+-+.. +.|. +..++++..|+++.. ++..+
T Consensus 15 ~~l~~~~~~~~~~~~--~~~~v~fI-PtAs~~~~~~~y~~~~~~af~~lG~~v~~------l~~~~-------------- 71 (233)
T PRK05282 15 GYLEHALPLIAELLA--GRRKAVFI-PYAGVTQSWDDYTAKVAEALAPLGIEVTG------IHRVA-------------- 71 (233)
T ss_pred chHHHHHHHHHHHHc--CCCeEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCEEEE------eccch--------------
Confidence 356777777776643 34689999 465432 3444 577888888887532 22110
Q ss_pred HHHHhccCCCEEEeCCCCCCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 353 AAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 353 ~a~~~L~~~DGIlVPGGfG~r-----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
+..+.+.++|+|+++||--.+ .-.++..+++.+.++++|+.|+|.|.-+++-
T Consensus 72 d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~ 128 (233)
T PRK05282 72 DPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGP 128 (233)
T ss_pred hhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhc
Confidence 012568999999999984332 1135677888888999999999999988753
No 119
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.45 E-value=0.26 Score=53.77 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=55.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 374 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg- 374 (599)
|+|.|--.=+....+-...+.+|+..-.. . ..+..|++..|..+ | | ..+++.+|+|||...+-
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p-~--y~V~~v~~~~l~~~-----p------w--~~~~~LlV~PGG~d~~y~ 64 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSP-H--YAVIPVTADELLNE-----P------W--QSKCALLVMPGGADLPYC 64 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCC-C--eEEEEeCHHHhhcC-----c------c--ccCCcEEEECCCcchHHH
Confidence 34555432232233444556666643211 1 23345666555321 1 3 46789999999875432
Q ss_pred --hhHH-HHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 375 --VQGK-ILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 375 --~eg~-i~aik~are~~iP~LGICLGmQll~ 403 (599)
..+. ...||...+++--+||||.|--.++
T Consensus 65 ~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 65 RSLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred HhhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 2333 6788888899999999999988764
No 120
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.33 E-value=0.014 Score=55.19 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=37.3
Q ss_pred cCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
..+|+|+||||++.. .....+..++.+.++++|+.|||-|-++|+
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La 108 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLI 108 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHH
Confidence 468999999998543 225577889999999999999999999985
No 121
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.09 E-value=0.0081 Score=58.02 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=37.7
Q ss_pred cCCCEEEeCCCCCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg---~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..+|+|+||||++... .......++.+.++++|+.|||.|.++|+-
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 3689999999976422 245778888899999999999999999864
No 122
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.00 E-value=0.021 Score=55.39 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=64.0
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc--ccCCc-hhhhHHHHhccCCCEEEeCCC-C
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDAT--EKENP-DAYKAAWKLLKGADGILVPGG-F 370 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~--~~~~p-~~y~~a~~~L~~~DGIlVPGG-f 370 (599)
.+|+++ -+....+. +..-.+.|+.+|..+.+. ..+.......... ....+ ..+..+ ..+++|+|++||| .
T Consensus 3 ~~i~i~-~~~g~e~~E~~~p~~~l~~ag~~v~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~ydal~ipGG~~ 77 (188)
T COG0693 3 KKIAIL-LADGFEDLELIVPYDVLRRAGFEVDVA--SPEGKGKSVTSKRGGLVVADDKAFDDA--DAADYDALVIPGGDH 77 (188)
T ss_pred ceeEEE-ecCcceehhHhHHHHHHHHCCCeEEEE--ecCCCcceeecccCcceEecccccccC--CHhHCCEEEECCCcc
Confidence 467766 45555544 667888999999876442 1111100111000 00000 011110 1358999999999 7
Q ss_pred CCCch---hHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 371 GNRGV---QGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 371 G~rg~---eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
|.... +..+..++++.++++|+..||-|-++|.
T Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 78 GPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred chhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 76532 5688999999999999999999999985
No 123
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.89 E-value=0.0086 Score=66.70 Aligned_cols=54 Identities=31% Similarity=0.447 Sum_probs=41.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~ 67 (599)
||.|.|- |..|..||=+.++-+=++|..+|++|..-|- =.||= -=|||.||+|.
T Consensus 1 ~~~iMv~-GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI 54 (486)
T COG1492 1 MKAIMVQ-GTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI 54 (486)
T ss_pred CCccEEE-eccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE
Confidence 4444443 6889999999999999999999999997763 23332 34888898885
No 124
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.83 E-value=0.04 Score=50.97 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred eEEEEEeecCCCcc-hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCc-cccCCch-hhhHHHHhccCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDA-TEKENPD-AYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~D-aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~-~~~~~p~-~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
.||+++- |..... .+.+..+.|+.+++++.+ ...+...+... ...-.++ .|+. .....+|+|+||||.+.
T Consensus 2 ~~v~ill-~~g~~~~e~~~~~~~~~~a~~~v~v----vs~~~~~v~s~~g~~i~~~~~l~~--~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 2 RKVGILV-ADGVDAAELSALKAALKAAGANVKV----VAPTLGGVVDSDGKTLEVDQTYAG--APSVLFDAVVVPGGAEA 74 (142)
T ss_pred CEEEEEE-cCCcCHHHHHHHHHHHHHCCCEEEE----EecCcCceecCCCcEEecceeecC--CChhhcCEEEECCCccC
Confidence 3577763 544432 366888999999876543 11111111000 0000000 1110 01235899999998764
Q ss_pred C----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 373 R----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 373 r----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
. .....+..++.+.++++|+.+||-|-.+|+-
T Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~ 110 (142)
T cd03132 75 AFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEA 110 (142)
T ss_pred HHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHH
Confidence 2 3456778888888899999999999998853
No 125
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.74 E-value=0.053 Score=51.69 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=80.3
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCC
Q 007533 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDN 86 (599)
Q Consensus 7 tggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l~~~~ 86 (599)
..+--.|.||=.+|+.++..|...|+||-.+-.||--.. .. +++
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~----~~------------------------~~~-------- 47 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS----IP------------------------KMW-------- 47 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC----ch------------------------HHH--------
Confidence 334457899999999999999999999999998885421 10 000
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHHHHHHh
Q 007533 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166 (599)
Q Consensus 87 n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ea~rq~ 166 (599)
+ -|...+.++++++... ...+|+|||-.++.++|. .+.+++
T Consensus 48 ----------------~----------~~~~~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~----~~~~~~-- 88 (169)
T cd02037 48 ----------------R----------GPMKMGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE----HLTLAQ-- 88 (169)
T ss_pred ----------------h----------CcchHHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH----HHHHHh--
Confidence 0 0122345666666553 257999999999998761 122221
Q ss_pred hhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecC
Q 007533 167 SYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRST 219 (599)
Q Consensus 167 ~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~ 219 (599)
....+..++|. ..+..--+-+...++.|++.|+...++|+.-.
T Consensus 89 --------~~~ad~viiV~--~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~ 131 (169)
T cd02037 89 --------SLPIDGAVIVT--TPQEVALDDVRKAIDMFKKVNIPILGVVENMS 131 (169)
T ss_pred --------ccCCCeEEEEE--CCchhhHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 01112333332 23444445566777888899998887776443
No 126
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.26 Score=58.19 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=59.5
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
..+|+||+-. +....+..+.-|+..||++..- |.-.||-... ..|+++-||..+|||.+.
T Consensus 1057 ~~PkVAilRE--eGvNg~rEMa~af~~AgF~~~D------VtmtDlL~G~------------~~ld~frGlaf~GGFSYa 1116 (1320)
T KOG1907|consen 1057 TAPKVAILRE--EGVNGDREMAAAFYAAGFETVD------VTMTDLLAGR------------HHLDDFRGLAFCGGFSYA 1116 (1320)
T ss_pred CCCceEEeec--cccccHHHHHHHHHHcCCceee------eeeehhhcCc------------eeHhHhcceeeecCcchH
Confidence 3569999943 3455799999999999998621 2223443221 247889999999999653
Q ss_pred -------ch-------hHHHHHHHHH-HHcCCCEEEEehhHHHHHH
Q 007533 374 -------GV-------QGKILAAKYA-REHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 374 -------g~-------eg~i~aik~a-re~~iP~LGICLGmQll~i 404 (599)
|+ +....-.... +..+.=-||||-|.|+|+.
T Consensus 1117 DvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1117 DVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred hhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence 22 2333323322 2345667999999999974
No 127
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=95.42 E-value=0.023 Score=57.91 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=40.2
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 405 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ie 405 (599)
.+++|+|++|||.|. +..+....+++.+.++++|+-.||-|-++|.-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 568999999999764 234567889999999999999999999988643
No 128
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=95.05 E-value=0.059 Score=53.57 Aligned_cols=166 Identities=18% Similarity=0.204 Sum_probs=91.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l~ 83 (599)
||||| .=++.||=.+++.|.+.|+.+|++|-..| |.++|--... .|=|.--..+++++...
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALREAGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHHcCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 56654 56999999999999999999999998865 5666531110 12233335555544322
Q ss_pred CCCcccchHhhHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--ccc
Q 007533 84 RDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ESM 157 (599)
Q Consensus 84 ~~~n~ttgkiy~~v----i~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdi--es~ 157 (599)
. ...++-.|+.. +..++.| . +--.+.|++.+++++ .++|+||||-.|.+.+- .++
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11122222111 1111121 1 123467888887764 46899999988766432 111
Q ss_pred hHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCC
Q 007533 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTV 220 (599)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~ 220 (599)
-..+-+++ .+ -.+..|.- + ..+. ..-+.-+++.++..|+...++|+....
T Consensus 124 ~~adl~~~----l~-~pvilV~~---~---~~~~--i~~~~~~i~~l~~~~~~i~gvIlN~~~ 173 (222)
T PRK00090 124 TLADLAKQ----LQ-LPVILVVG---V---KLGC--INHTLLTLEAIRARGLPLAGWVANGIP 173 (222)
T ss_pred cHHHHHHH----hC-CCEEEEEC---C---CCcH--HHHHHHHHHHHHHCCCCeEEEEEccCC
Confidence 12222333 32 12333321 1 1122 224677788888889988888876443
No 129
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=94.80 E-value=0.17 Score=49.49 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=58.8
Q ss_pred eEEEEEeecCCCcch-HHHHHHHHHHcCCcceeeeEEEEecCC---CCCC-ccccCCchhhhHHHHh--ccCCCEEEeCC
Q 007533 296 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPAC---DLED-ATEKENPDAYKAAWKL--LKGADGILVPG 368 (599)
Q Consensus 296 v~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~---~le~-~~~~~~p~~y~~a~~~--L~~~DGIlVPG 368 (599)
.||+|+ =|..+.+. +....+.|+.+|+++.+- -+... .+.. ....-.++ ...+. ..++|.|+|||
T Consensus 3 ~~~~il-~~~g~~~~e~~~p~~~l~~ag~~v~~~----s~~~~~~~~v~ss~G~~v~~d---~~l~~~~~~~~D~l~ipG 74 (196)
T PRK11574 3 ASALVC-LAPGSEETEAVTTIDLLVRGGIKVTTA----SVASDGNLEITCSRGVKLLAD---APLVEVADGDFDVIVLPG 74 (196)
T ss_pred ceEEEE-eCCCcchhhHhHHHHHHHHCCCeEEEE----EccCCCCceEEcCCCCEEeCC---CCHHHCCCCCCCEEEECC
Confidence 356666 35555443 667788888888765431 11110 0000 00000010 01122 25799999999
Q ss_pred CCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 369 GFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 369 GfG~r----g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
|++.. ..+..+..++.+.++++++.+||-|-.++.
T Consensus 75 G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 75 GIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 97432 234578889999999999999999998753
No 130
>PRK13768 GTPase; Provisional
Probab=94.78 E-value=0.18 Score=51.80 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=34.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|+|+|- +|.||-.++..+...|+..|.+|..+.+||-
T Consensus 3 ~~i~v~G~--~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT--AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC--CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 45556655 9999999999999999999999999999984
No 131
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=94.63 E-value=0.18 Score=50.92 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=98.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||-|||||- =.+.||=.+++.|.+.|+.+|++|..+| |.++|-.- + +++..|-|.--+.+..+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~~g~~v~~~K-------------Pi~~g~~~-~-~~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALASQGKTVAGYK-------------PVAKGSKE-T-PEGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEC-------------ccccCCcc-C-CCCCchHHHHHHHHhcCC
Confidence 467888874 4899999999999999999999998877 78888432 2 233445444445555555
Q ss_pred CCCCCC-c---ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--c
Q 007533 81 KLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--I 154 (599)
Q Consensus 81 ~l~~~~-n---~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgd--i 154 (599)
+.+-+. | ++.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+.. -
T Consensus 66 ~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~ 122 (231)
T PRK12374 66 ELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMN 122 (231)
T ss_pred CCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCcceecc
Confidence 433111 1 1111 1111211 111 2357888887764 4789999997762221 0
Q ss_pred ccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCC
Q 007533 155 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (599)
Q Consensus 155 es~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~ 221 (599)
+...+.+.++++ +.. +.+| + =...|. .--|.-+++.|++.|+..-++|+-...+
T Consensus 123 ~~~~~~d~~~~~----~~p-vilV--~----~~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 123 DLRPLSEWVVQE----QLP-VLMV--V----GIQEGC--INHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred CcccHHHHHHHh----CCC-EEEE--E----CCCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 112233444442 211 1111 1 001233 2355667788999999999999876544
No 132
>PRK04155 chaperone protein HchA; Provisional
Probab=94.48 E-value=0.054 Score=57.07 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=39.2
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.+++|+|++|||.|. +..+...++++++.++++|+..||-|-++|.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 468999999999765 3446688999999999999999999998764
No 133
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.40 E-value=0.11 Score=43.18 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=29.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
|+++|.- |.||-.+++.+...|+..|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5677666 99999999999999999999999888
No 134
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=94.30 E-value=0.03 Score=52.40 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=36.8
Q ss_pred ccCCCEEEeCCCCCC----Cch-hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~-eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|+|++|||.+. +.. +.....++++.++++|+.+||-|-.+|+.
T Consensus 35 ~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~ 86 (147)
T PF01965_consen 35 PSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAA 86 (147)
T ss_dssp GGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHH
T ss_pred hhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhc
Confidence 457999999999873 222 56888999999999999999999977753
No 135
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.30 E-value=0.28 Score=48.81 Aligned_cols=106 Identities=17% Similarity=0.055 Sum_probs=63.8
Q ss_pred HHHHHHhhhcCCCCceEEEEEeecCCC-cch-HHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc
Q 007533 281 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358 (599)
Q Consensus 281 ~W~~l~~~~~~~~~~v~IaiVGkY~~l-~Da-Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L 358 (599)
-++.+..... ....+|+++. .... .+. ...+.++++..|+.... +.+++. .. + ....+.+
T Consensus 17 ~~~~~~~~~~--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~---~~~~~~--~~------~----~~~~~~l 78 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVH---LLLIDT--AN------D----PDVVARL 78 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEE---EeccCC--CC------C----HHHHHHH
Confidence 3444444332 2357899994 4332 122 34678889999987643 222222 10 0 1234679
Q ss_pred cCCCEEEeCCCCCCCc---h--hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGNRG---V--QGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg---~--eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|+|+++||--.+- + .+...+++....++.|+.|+|.|..++.-
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~ 129 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGE 129 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhh
Confidence 9999999999732221 1 12444555555589999999999999853
No 136
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.05 E-value=0.31 Score=52.49 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=50.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-------CCCCCCc-cccceEEEccCCccc
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-------DAGTMSP-FEHGEVFVLDDGGEV 67 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~-------d~gtmsp-~~hgevfv~~dg~e~ 67 (599)
.|-|||- +|-||=.+...+...|+.+|++|..+.+||.-.+ |.-.|.. .+|..||+-..++..
T Consensus 58 ~igi~G~--~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~ 128 (332)
T PRK09435 58 RIGITGV--PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSG 128 (332)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcc
Confidence 4667775 8999999999999999999999999999998776 5555653 366667777766544
No 137
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.64 E-value=0.14 Score=49.29 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=39.8
Q ss_pred hccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 357 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.+.++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|-++|+-
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 35688999999997653 3466888899888899999999999998853
No 138
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=93.55 E-value=0.11 Score=52.94 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=38.8
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.+++|+|++|||.|. +..+...++++++.++++|+-.||-|-+++.
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 468999999999664 3346678899999999999999999998764
No 139
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=93.39 E-value=0.049 Score=55.05 Aligned_cols=154 Identities=24% Similarity=0.278 Sum_probs=81.8
Q ss_pred cCCCEEEeCCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHh----ccccc--cccCCCccccCCCCC
Q 007533 359 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF----ARSVL--NLRDANSTEFDPNTK 426 (599)
Q Consensus 359 ~~~DGIlVPGGfG~r------g~eg~i~aik~are~~iP~LGICLGmQll~ief----gr~Vl--gl~dA~S~Ef~~~~~ 426 (599)
+++|-+++.||-... ....+...++.+.++++|+|.||-|.|+|.-.| |.++- |+-|..+.. +
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY~~a~G~ri~GlGiLd~~T~~--~--- 125 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDGLGILDHYTEN--P--- 125 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccceeecCCCcEeecccceeeeecc--c---
Confidence 578988887764332 112355788999999999999999999997543 23332 222221110 0
Q ss_pred CCeeeeCCCCCcCcCCCccc-cCceeeEEecCCchhhhccCCceeEEeeeeeeeeeCchhhhhhccCCeEEEEEeCCCC-
Q 007533 427 NPCVIFMPEGSKTHMGGTMR-LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ- 504 (599)
Q Consensus 427 ~~vi~~mpe~~~~~~Ggtmr-LG~~~v~l~~~~s~l~~iyg~~~~I~erHrHrYeVnp~~v~~le~~Gl~~sa~s~dg~- 504 (599)
.+-| .|. +.+.+ ++....++.+-.=.|.|+-|=...|+ .++-|-.+.|.-.++.
T Consensus 126 ----------------~~~R~IGd--iv~~~--~~~~e~~~et~~GFENH~GrT~L~~d----~~pLG~Vv~G~GNn~eD 181 (250)
T COG3442 126 ----------------QTKRFIGD--IVIEN--TLAGEEFGETLVGFENHGGRTYLGPD----VKPLGKVVYGYGNNGED 181 (250)
T ss_pred ----------------cccceeee--EEeec--ccchHHhCCeeeeeecCCCceecCCC----CccceeEEEccCCCccc
Confidence 0111 111 22222 11112222121114566655333332 3355666666543221
Q ss_pred eEEEEEeCCCCeEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 007533 505 RMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 547 (599)
Q Consensus 505 ~vE~iE~~~hpffvGvQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 547 (599)
--|++-+++ .+|+=||==..|+- | .|=..|+..|++.
T Consensus 182 ~~eG~~ykn---~~aTY~HGP~L~rN--p-~LAd~Ll~tAl~~ 218 (250)
T COG3442 182 GTEGAHYKN---VIATYFHGPILSRN--P-ELADRLLTTALEK 218 (250)
T ss_pred cccceeeee---eEEEeecCccccCC--H-HHHHHHHHHHHHH
Confidence 146666654 67999996666553 1 3556677777663
No 140
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=93.26 E-value=0.12 Score=52.14 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.2
Q ss_pred ccCCCEEEeCCCCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
++++|+|+||||.+.. ..+.....++.+.++++|+.+||-|-++|+-
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ 138 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHh
Confidence 4579999999997642 3356888999999999999999999998864
No 141
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.12 E-value=0.15 Score=48.78 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=38.2
Q ss_pred cCCCEEEeCCCCCC--CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFGN--RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG~--rg~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|.|+||||+.. ...+...+.++.+.+++.++.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 57899999999753 23356788899999999999999999999864
No 142
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.84 E-value=0.2 Score=48.76 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=38.1
Q ss_pred ccCCCEEEeCCCCCCC------chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r------g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|.|+||||.+.. ..+..+..++.+.+++.++.+||-|..+|+-
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 119 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAE 119 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHH
Confidence 4678999999986542 2355778888888899999999999999853
No 143
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=92.68 E-value=0.17 Score=47.40 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=37.8
Q ss_pred cCCCEEEeCCCCC-CC---chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 359 KGADGILVPGGFG-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 359 ~~~DGIlVPGGfG-~r---g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
.++|.|+||||.+ .. ..+..+..++.+.++++++.+||-|-.+|+-
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 6899999999973 32 2355778888888999999999999999864
No 144
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=92.60 E-value=0.83 Score=53.68 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
||-|||+| .=++.||=.++..|...|+.+|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 57888884 56999999999999999999999999999
No 145
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=92.39 E-value=2.6 Score=42.28 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|-|.|+++ =-|.||=.+|+.++..|..+|+||-.+-.||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45666543 46899999999999999999999999999994
No 146
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.27 E-value=0.84 Score=48.07 Aligned_cols=46 Identities=33% Similarity=0.518 Sum_probs=39.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG 48 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~g 48 (599)
++.|.|+|. .|-||=.++..++..|..+|++|..+.+||+-+.-.|
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~ 79 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGG 79 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchh
Confidence 367888875 8999999999999999999999999999997544333
No 147
>PRK14974 cell division protein FtsY; Provisional
Probab=92.21 E-value=2.3 Score=45.95 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|.++| ..|.||=.+++.++..|+..|++|..+-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4678888 88999999999999999999999999888877
No 148
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=92.18 E-value=0.54 Score=48.33 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|+||++|. .|.||=.+|+.++..+...|.||-.+-.||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888886 9999999999999999999999999999994
No 149
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=91.44 E-value=0.3 Score=46.65 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=37.6
Q ss_pred ccCCCEEEeCCCCCC----CchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~----rg~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
..++|.|+||||.+. +..+..+..++.+.++++|+.+||-|-.+|+-
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 567999999998642 12345778888888899999999999999864
No 150
>PRK11249 katE hydroperoxidase II; Provisional
Probab=91.10 E-value=0.73 Score=54.52 Aligned_cols=104 Identities=18% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCC---ccccCCchhhhHHHHhccCCCEEEeCC
Q 007533 293 HEPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLED---ATEKENPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 293 ~~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~---~~~~~~p~~y~~a~~~L~~~DGIlVPG 368 (599)
-++.||||+- +.... ..+..+.++|+.+|+.+.+ .......+.. ..+..+ ..|..+ ....+|+|+|||
T Consensus 595 ~~gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~V----VSp~~G~V~~s~G~~I~aD-~t~~~~--~Sv~FDAVvVPG 666 (752)
T PRK11249 595 IKGRKVAILL-NDGVDAADLLAILKALKAKGVHAKL----LYPRMGEVTADDGTVLPIA-ATFAGA--PSLTFDAVIVPG 666 (752)
T ss_pred ccccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEE----EECCCCeEECCCCCEEecc-eeeccC--CccCCCEEEECC
Confidence 3567899884 44443 3477899999999986543 2211111100 000000 011100 012589999999
Q ss_pred CCCCC----chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 369 GFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 369 GfG~r----g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
|.... .....+..++.+.++.+|+..||-|.++|.-
T Consensus 667 G~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaa 706 (752)
T PRK11249 667 GKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAA 706 (752)
T ss_pred CchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHh
Confidence 86432 2235778888899999999999999999963
No 151
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=90.96 E-value=0.31 Score=46.67 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=36.9
Q ss_pred ccCCCEEEeCCCCCCC---chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r---g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
...+|+|+||||.+.. ..+..+..++.+.++++|+.+||-|.-+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4579999999997643 235577788888888999999999997774
No 152
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.94 E-value=1.3 Score=44.35 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=35.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
||.|.|+++ =.|.||=.+|+-++..|..+|+||-.|-.||.
T Consensus 1 m~iI~v~s~-KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV-KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC-CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 676766543 46889999999999999999999999999996
No 153
>PRK10867 signal recognition particle protein; Provisional
Probab=90.82 E-value=3.6 Score=45.93 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~-g~~v~~~k~dpy 42 (599)
+.|+++| ..|.||=.+++.++..|+.. |.+|..+-.|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4577887 89999999999999999998 999999999997
No 154
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.81 E-value=5 Score=41.93 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|.++| ..|.||=.+++.++..|+..|.+|.++-.|+|
T Consensus 73 ~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 6788885 89999999999999999999999999999996
No 155
>PHA02518 ParA-like protein; Provisional
Probab=90.40 E-value=1.1 Score=43.59 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.2
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 11 ~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
=-|.||=.+|+.++..|..+|++|.+|-+||.-
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 346799999999999999999999999999974
No 156
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=90.34 E-value=0.56 Score=45.22 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.4
Q ss_pred ccCCCEEEeCCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 358 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 358 L~~~DGIlVPGGfG~r--g~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
..++|.|+||||++.. ..+..+..++.+.+++..+.+||-|..+++
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 4578999999986643 345678889998899999999999999985
No 157
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=90.21 E-value=0.37 Score=45.62 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred hccCCCEEEeCCCCC---CCchhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 357 LLKGADGILVPGGFG---NRGVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG---~rg~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
....+|.|+||||++ ....+..+..++.+..++.++.+||-|..+++-
T Consensus 58 ~~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 108 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAE 108 (166)
T ss_dssp CCSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHH
T ss_pred hcccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhh
Confidence 356899999999998 123355677787777889999999999999964
No 158
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=89.54 E-value=2.1 Score=40.46 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
|.++|. +|-||=.++..++..|+.+|.+|..+..||..
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 455664 78999999999999999999999999999843
No 159
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=88.85 E-value=1.6 Score=43.54 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.7
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 9 gv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+-=.|.||=.+|+.++..|..+|++|-.+.+||.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3346789999999999999999999999999994
No 160
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=86.94 E-value=7.8 Score=39.43 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=35.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||.|-|+ +-==|.||=.+|..++..|..+|++|.++-.||--|.
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~ 44 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRPL 44 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Confidence 5655443 2334679999999999999999999999999998653
No 161
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.85 E-value=8 Score=43.08 Aligned_cols=143 Identities=19% Similarity=0.239 Sum_probs=87.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~ 81 (599)
+.|.+.|- .|.||=.+++.|+..|..+|++|..+-.|||- +|..+-..
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R---iaAvEQLk--------------------------- 289 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQLQ--------------------------- 289 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHHH---------------------------
Confidence 35666665 99999999999999999999999999999885 12111111
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHH
Q 007533 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (599)
Q Consensus 82 l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~e 161 (599)
.|. +-+|-.|-++. -.+++++.|..++. ..+.|+|||...|.-- -....++
T Consensus 290 -----------~ya---------e~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--kd~~lm~ 340 (436)
T PRK11889 290 -----------DYV---------KTIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--RASETVE 340 (436)
T ss_pred -----------HHh---------hhcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--cCHHHHH
Confidence 011 11332332222 24677788877752 2368999999988843 2344566
Q ss_pred HHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEE
Q 007533 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (599)
Q Consensus 162 a~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~ 216 (599)
.++++.....+..++++ +++ -.|.+-....++.++. +.+|.+|.
T Consensus 341 EL~~~lk~~~PdevlLV-------LsA--Ttk~~d~~~i~~~F~~--~~idglI~ 384 (436)
T PRK11889 341 EMIETMGQVEPDYICLT-------LSA--SMKSKDMIEIITNFKD--IHIDGIVF 384 (436)
T ss_pred HHHHHHhhcCCCeEEEE-------ECC--ccChHHHHHHHHHhcC--CCCCEEEE
Confidence 66666655544433222 433 2333344556666665 44566665
No 162
>PRK10818 cell division inhibitor MinD; Provisional
Probab=86.55 E-value=8.5 Score=39.29 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|-|-|+ +-=.|.||=.+|+.++..|..+|.+|-.+-+||.
T Consensus 3 kviav~-s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVT-SGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEE-eCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 555555 3457899999999999999999999999999996
No 163
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=86.36 E-value=2.8 Score=36.29 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=32.6
Q ss_pred EeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 6 VTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 6 vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+-.|-=.|.||=.+|+.++..|..+|.+|-.+-.||.
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3344556899999999999999999999999999998
No 164
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=86.15 E-value=3.1 Score=42.98 Aligned_cols=108 Identities=19% Similarity=0.097 Sum_probs=65.2
Q ss_pred HHHHHHhhhcCCCCceEEEEEeecCCC-cchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc
Q 007533 281 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358 (599)
Q Consensus 281 ~W~~l~~~~~~~~~~v~IaiVGkY~~l-~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L 358 (599)
-|+.+++..... ..||+++- ..+. .+.|. ...++|+..|+.....+ -+.+. +.. .+| +..+.+
T Consensus 16 i~~~~~~lag~~--~~rI~~ip-tAS~~~~~~~~~~~~~~~~lG~~~v~~l---~i~~r--~~a---~~~----~~~~~l 80 (250)
T TIGR02069 16 ILREFVSRAGGE--DAIIVIIT-SASEEPREVGERYITIFSRLGVKEVKIL---DVRER--EDA---SDE----NAIALL 80 (250)
T ss_pred HHHHHHHHhCCC--CceEEEEe-CCCCChHHHHHHHHHHHHHcCCceeEEE---ecCCh--HHc---cCH----HHHHHH
Confidence 455565554332 35899994 3221 22333 56778888998632222 22211 100 111 123568
Q ss_pred cCCCEEEeCCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg-----~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.++|+|++.||--.+- -.+...+++.+.+++.|+.|+-.|.-+|+
T Consensus 81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 9999999999843221 13456778888888999999999998774
No 165
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=86.09 E-value=1.3 Score=46.63 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=37.8
Q ss_pred hccCCCEEEeCCCCCCC--chhHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 357 LLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~r--g~eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
....+|.|+||||.+.. .....+..++.+.+++.++.|||-|--+|+-
T Consensus 72 ~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 121 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAA 121 (322)
T ss_pred ccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHh
Confidence 46689999999986532 2345777888888889999999999988753
No 166
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.98 E-value=5.9 Score=44.21 Aligned_cols=141 Identities=23% Similarity=0.338 Sum_probs=82.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~-~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~ 81 (599)
.|+++| ..|.||=.+++.++..|+ .+|.+|..+-+|+|--- .. +
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~---a~---~--------------------------- 145 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA---AI---E--------------------------- 145 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH---HH---H---------------------------
Confidence 455555 579999999999999987 68999999999995210 00 0
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHH-HHHHHHHhcccCCCCCCCCcEEEEeeCccccccccch
Q 007533 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 158 (599)
Q Consensus 82 l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit--~~i-~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~p 158 (599)
+-++.+...|-.+...+.-. .+| ++.++.+. ...+|+|||...|-.. +.. .
T Consensus 146 -----------------QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~-------~~~~DvVIIDTaGr~~-~d~-~ 199 (428)
T TIGR00959 146 -----------------QLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK-------ENGFDVVIVDTAGRLQ-IDE-E 199 (428)
T ss_pred -----------------HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH-------hcCCCEEEEeCCCccc-cCH-H
Confidence 11122223333333333211 133 34444442 3568999999999865 222 3
Q ss_pred HHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcC--CCcccEEEEe
Q 007533 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ--GLTPNILACR 217 (599)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~--Gi~pd~iv~R 217 (599)
-++.++++..-+.++.+++| +.+. | .|.+++..+.. .+..+.+|+-
T Consensus 200 l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEEEEe
Confidence 45777888877766655333 3322 2 25555444332 3455677653
No 167
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=85.00 E-value=6 Score=39.46 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=34.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
++++| -.|.||=.+++.++..+...|+||-.+-.||--+
T Consensus 2 ~~~~g--~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEeC--CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 34444 6899999999999999999999999999998765
No 168
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=84.90 E-value=4.4 Score=38.25 Aligned_cols=153 Identities=21% Similarity=0.282 Sum_probs=80.6
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCccc
Q 007533 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNIT 89 (599)
Q Consensus 10 v~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l~~~~n~t 89 (599)
.-.|.||=.+|+.+.+.|+.+|+||-.+| |.+||-- . .|-|.-.-.+++.... +.+..
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k-------------P~~~~~~-----~--~d~d~~~i~~~~~~~~--~~~~~ 62 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK-------------PVQTGIE-----K--TNSDALLLQNISGTAL--DWDEV 62 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE-------------eeeeCCC-----C--CchHHHHHHHHcCCCC--chhcc
Confidence 46789999999999999999999998854 5666520 0 1222111112221111 11111
Q ss_pred chHhhH-----HHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHH--H
Q 007533 90 TGKIYQ-----SVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE--A 162 (599)
Q Consensus 90 tgkiy~-----~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~e--a 162 (599)
.+-.|. ++....+ + + |....+|++.+++++ .+.|++|||-.|.+.. |+.+ .
T Consensus 63 ~~~~~~~~~~p~~~~~~~-~----~-----~~~~~~i~~~~~~l~--------~~~D~viid~~g~~~~----~~~~~~~ 120 (166)
T TIGR00347 63 NPYAFALPLSPHIAADQE-G----R-----PIDLEELSKHLRTLE--------QKYDFVLVEGAGGLCV----PITEEYT 120 (166)
T ss_pred CCeeeCCCCChHHHHHHh-C----C-----CCCHHHHHHHHHHHH--------hcCCEEEEEcCCcccc----CCCCCCc
Confidence 110010 1111110 0 0 223356777887764 3689999999885443 2111 1
Q ss_pred HHHhhhHcCCCCEEEEeeeeeeeecC-CCccccCCchhhhhhhhcCCCcccEEEE
Q 007533 163 LGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (599)
Q Consensus 163 ~rq~~~~~g~~n~~~ihv~~vp~~~~-~~e~ktkptq~sv~~Lrs~Gi~pd~iv~ 216 (599)
..++-..++-. +.+| ... .++ -.=++-+++.|++.|+..-++|+
T Consensus 121 ~~dl~~~~~~~-vilV-------~~~~~~~--~~~~~~~~~~l~~~~~~i~gvv~ 165 (166)
T TIGR00347 121 TADLIKLLQLP-VILV-------VRVKLGT--INHTLLTVEHARQTGLTLAGVIL 165 (166)
T ss_pred HHHHHHHhCCC-EEEE-------ECCCCcH--HHHHHHHHHHHHHCCCCeEEEEe
Confidence 23344444422 3222 111 122 23566677788899988888775
No 169
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=84.84 E-value=1.7 Score=44.45 Aligned_cols=37 Identities=32% Similarity=0.250 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
||.|.|+|- ||-||=.++..+-..|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 889999998 8999999999999999999999999993
No 170
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.57 E-value=12 Score=35.62 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=32.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.++| ..|-||=.+++.+...|...|.+|..+-.|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45555 36899999999999999999999999999985
No 171
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=84.25 E-value=2.2 Score=44.72 Aligned_cols=45 Identities=31% Similarity=0.319 Sum_probs=39.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc--ccCCCCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY--LNTDAGT 49 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy--ln~d~gt 49 (599)
||.|-|+|- ||-||=..+..|-..|+.+| +|..||.||- .. -+|+
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~-~~g~ 47 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLN-PDGT 47 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCC-CCCC
Confidence 788889998 89999999999999999999 9999999993 22 4663
No 172
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=83.63 E-value=11 Score=39.35 Aligned_cols=197 Identities=17% Similarity=0.259 Sum_probs=108.0
Q ss_pred CceEEEEEeecCCCc-chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCCCEEEeCCCC
Q 007533 294 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 370 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~-DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIlVPGGf 370 (599)
...+|+|+- --.-+ ..=..+++.|-. -...+.+.+..+++..- ..+..+...+|-.-|+.+ ..+||.||+|.|
T Consensus 34 RPL~IlilN-LMP~Ki~TE~Q~lRLL~n--sPLQV~itll~~~sh~~-KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGAP 109 (307)
T COG1897 34 RPLKILILN-LMPKKIETETQILRLLGN--SPLQVDITLLRIDSHES-KNTPAEHLNSFYCTFEEVKDQKFDGLIITGAP 109 (307)
T ss_pred ccceeeeee-cCchhHHHHHHHHHHhcC--CCceEEEEEEEecCcCC-CCCcHHHHHHHhhcHHHHhhcccCceEEeCCc
Confidence 457888882 32110 011134444422 33455556666665432 222223333444444443 579999999976
Q ss_pred CCC-------chhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhccccccccCCCccccCCCCCCCeeeeCCCCCcCcCCC
Q 007533 371 GNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 443 (599)
Q Consensus 371 G~r-------g~eg~i~aik~are~~iP~LGICLGmQll~iefgr~Vlgl~dA~S~Ef~~~~~~~vi~~mpe~~~~~~Gg 443 (599)
=.. -++.+...+.|...+=--.|=||-|.|.+...|= |++.-. ||+. .
T Consensus 110 ve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~y----Gv~K~~---------------l~~K----l-- 164 (307)
T COG1897 110 VELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFY----GVPKYT---------------LPEK----L-- 164 (307)
T ss_pred ccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHc----CCCccc---------------cchh----h--
Confidence 332 2466888899999888889999999999876542 322110 1110 0
Q ss_pred ccccCceeeE-EecCCchhhhccCCceeEEeeeeeee-eeCchhhhhhccCCeEEEEEeCCCCeEEEEEeCCCCeEEEEc
Q 007533 444 TMRLGSRRTY-FQIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 521 (599)
Q Consensus 444 tmrLG~~~v~-l~~~~s~l~~iyg~~~~I~erHrHrY-eVnp~~v~~le~~Gl~~sa~s~dg~~vE~iE~~~hpffvGvQ 521 (599)
.|-++-. +.+.+.+++++ . +....-| -|| +++.+.+.+ ..+|++++.+.... +-.+..+++..+ =+-
T Consensus 165 ---~GVy~h~~l~p~~~l~rGf-d--d~f~~Ph-SR~t~~~~e~i~~--~~~LeIL~es~e~G-~~l~a~k~~r~i-fv~ 233 (307)
T COG1897 165 ---SGVYKHDILSPHSLLTRGF-D--DSFLAPH-SRYTDVPKEDILA--VPDLEILAESKEAG-VYLLASKDGRNI-FVT 233 (307)
T ss_pred ---hceeeccccCccchhhccC-C--ccccCcc-cccccCCHHHHhh--CCCceeeecccccc-eEEEecCCCCeE-EEe
Confidence 1122211 22331222322 1 1112223 233 566666655 46799999886655 677777777753 567
Q ss_pred ccCCCcCCC
Q 007533 522 FHPEYKSRP 530 (599)
Q Consensus 522 FHPE~ss~p 530 (599)
-|||+....
T Consensus 234 gH~EYD~~t 242 (307)
T COG1897 234 GHPEYDATT 242 (307)
T ss_pred CCcchhhhH
Confidence 799998764
No 173
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.45 E-value=1.8 Score=45.27 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-C-CeeEEeeecccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-G-LRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~-g-~~v~~~k~dpyl 43 (599)
+.|.+.|. +|.||=.+++.++..|+.+ | ++|.++.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35667775 8999999999999999876 5 999999999874
No 174
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=82.04 E-value=2.1 Score=41.84 Aligned_cols=163 Identities=20% Similarity=0.279 Sum_probs=89.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l 82 (599)
=||||| .=.+.||=.+++.|.+.|+.+|.+|...| |.++|.. + |=|.-...++.+...
T Consensus 2 ~i~I~~-t~t~vGKT~vslgL~~~l~~~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~~~~~~ 59 (199)
T PF13500_consen 2 TIFITG-TDTGVGKTVVSLGLARALRRRGIKVGYFK-------------PIQTGPE---D-----DEDAELIRELFGLSE 59 (199)
T ss_dssp EEEEEE-SSSSSSHHHHHHHHHHHHHHTTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHHCCTCC
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHHHhCCCceEEEe-------------eeEecCC---C-----CchHHHHHHHhCCCc
Confidence 466664 45789999999999999999999998777 8888876 1 224444566666554
Q ss_pred CCC--CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 83 TRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 83 ~~~--~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+.. +-++-..-.+..+..++.|. .++ .++|. .++++ .+.|++|||=-|.+. .....-
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~--~~~~~~ 118 (199)
T PF13500_consen 60 PPDDPSPYTFDEPASPHLAAELEGV----DID-----LERII--YKELA--------EEYDVVLVEGAGGLM--VPIFSG 118 (199)
T ss_dssp CHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTT--SECCTT
T ss_pred ccccccccccCcccCHHHHhhccCC----ccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccC--cccccC
Confidence 322 22222222233344444331 111 22222 24443 477999999555444 222222
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCcccc-CCchhhhhhhhcCCCcccEEEEec
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT-KPTQHSVRGLRGQGLTPNILACRS 218 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~kt-kptq~sv~~Lrs~Gi~pd~iv~R~ 218 (599)
.-..++...++.. +++ +.+ ++..| -=+..+++.++..|+..-++|.-.
T Consensus 119 ~~n~dia~~L~a~-vIl-------V~~--~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 119 DLNADIAKALGAP-VIL-------VAS--GRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp EEHHHHHHHHT-E-EEE-------EEE--SSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred hHHHHHHHHcCCC-EEE-------EeC--CCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 3334555555422 222 221 22222 112446678888999999888776
No 175
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=81.67 E-value=2.6 Score=44.24 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
|| |.|+| =-|.||=.+|+.++..|..+|+||-.|-+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 78 77787 788999999999999999999999999999987753
No 176
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=81.60 E-value=2.3 Score=43.75 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||-|-|+ | =-|+||=.+|..|+..|..+|+||-.+-.||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 6778788 5 78999999999999999999999999999999885
No 177
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.94 E-value=2.5 Score=44.48 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=38.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCC
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGT 49 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gt 49 (599)
|-|||| ||-||=.++.++..+|+..|.+|..|..|.|--.|--+
T Consensus 2 IgItG~--SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~ 45 (277)
T cd02029 2 IAVTGS--SGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERME 45 (277)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchh
Confidence 678996 89999999999999999999999999999998755433
No 178
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=80.25 E-value=6.2 Score=39.71 Aligned_cols=108 Identities=15% Similarity=0.053 Sum_probs=64.7
Q ss_pred HHHHHHhhhcCCCCceEEEEEeecCCC-cchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc
Q 007533 281 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 358 (599)
Q Consensus 281 ~W~~l~~~~~~~~~~v~IaiVGkY~~l-~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L 358 (599)
-|+.+.+... ....+|+++. +... .+.|. .+.++++..|+..... +...+.+. ..+| ++.+.+
T Consensus 17 i~~~~~~~ag--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~v~~-----~~~~~~~~---a~~~----~~~~~l 81 (217)
T cd03145 17 ILQRFVARAG--GAGARIVVIP-AASEEPAEVGEEYRDVFERLGAREVEV-----LVIDSREA---ANDP----EVVARL 81 (217)
T ss_pred HHHHHHHHcC--CCCCcEEEEe-CCCcChhHHHHHHHHHHHHcCCceeEE-----eccCChHH---cCCH----HHHHHH
Confidence 3444554443 2357899994 4322 22333 5677788888764221 22111110 0111 133568
Q ss_pred cCCCEEEeCCCCCCCc-----hhHHHHHHHHHHHcCCCEEEEehhHHHHH
Q 007533 359 KGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAV 403 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg-----~eg~i~aik~are~~iP~LGICLGmQll~ 403 (599)
.++|+|++.||--.+- -.+...+++.+.+++.|+.|+-.|.-++.
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~ 131 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMS 131 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhh
Confidence 9999999999732221 13566788888889999999999998874
No 179
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=79.84 E-value=3.4 Score=42.67 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=40.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~ 47 (599)
||-|.++ | =.|.||=.+|..|+..|..+|+||-.+-.||-.|.=.
T Consensus 1 ~~~i~~~-g-KGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~ 45 (279)
T PRK13230 1 MRKFCFY-G-KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTR 45 (279)
T ss_pred CcEEEEE-C-CCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccc
Confidence 7778888 4 8899999999999999999999999999999877633
No 180
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=79.70 E-value=3.4 Score=41.98 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=40.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
||-|.|. | =-|.||=.+++-++..|..+|+||-.|-+||-.|.-
T Consensus 1 m~~iav~-~-KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 1 MRQIAIY-G-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred CcEEEEE-e-CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 7878888 5 899999999999999999999999999999998853
No 181
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=79.23 E-value=3.5 Score=42.12 Aligned_cols=184 Identities=21% Similarity=0.274 Sum_probs=114.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~ 80 (599)
||-+|||| .=-++||=++++.+-..|+.+|++|...| |.|=|. +....+=|.=.+.|+.++
T Consensus 2 ~~~~fVtG-TDT~VGKTv~S~aL~~~l~~~g~~~~~~K-------------PVqsG~-----~~~~~~~D~~~l~~~~~~ 62 (223)
T COG0132 2 MKRFFVTG-TDTGVGKTVVSAALAQALKQQGYSVAGYK-------------PVQTGS-----EETAENSDALVLQRLSGL 62 (223)
T ss_pred CceEEEEe-CCCCccHHHHHHHHHHHHHhCCCeeEEEC-------------ceeeCC-----CCCCCCchHHHHHHhcCC
Confidence 68899997 45789999999999999999999998777 667664 111114577778888888
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--cccch
Q 007533 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--IESMP 158 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgd--ies~p 158 (599)
.++.+ .++--.|+.-..--..-+.-|+++. .++|.++..+. ..+.|.++||=-|=+.= -|...
T Consensus 63 ~~~~~--~~~py~f~~P~sPhlAa~~eg~~I~-----~~~l~~~l~~l--------~~~~d~vlVEGAGGl~vPl~~~~~ 127 (223)
T COG0132 63 DLSYE--LINPYRFKEPLSPHLAAELEGRTID-----LEKLSQGLRQL--------LKKYDLVLVEGAGGLLVPLTEEYT 127 (223)
T ss_pred Ccccc--cccceecCCCCCcHHHHhhcCCccc-----HHHHHHHHHhh--------hcccCEEEEeCCCceeeecCCccc
Confidence 76621 2222233322221111222244422 23444444444 34889999996554310 12367
Q ss_pred HHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccc
Q 007533 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLS 231 (599)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kis 231 (599)
|..=++|++..+ .+|=-+ .+ |-.- -|=-|++.||+.||..-++|.-+..+.+......+.
T Consensus 128 ~~D~~~~~~lpv-----ILV~~~---~L---GtIN--HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~~ 187 (223)
T COG0132 128 FADLAVQLQLPV-----ILVVGI---KL---GTIN--HTLLTVEALRARGLPLAGWVANGINPELDHYAEINA 187 (223)
T ss_pred HHHHHHHcCCCE-----EEEecC---Cc---cHHH--HHHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHHH
Confidence 778888887542 222111 12 2222 455688999999999999999998887777655543
No 182
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.22 E-value=3.4 Score=44.46 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=43.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtms 51 (599)
|++||+|| =.|+||=.+||+++..|-+.|.||-.+-.||=-|...-...
T Consensus 2 ~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEec--CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 58999998 47899999999999999999999999999998887655444
No 183
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=78.74 E-value=2.9 Score=44.42 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=36.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
||+||++|= =|+||=.+||+++..+..+|.||-.+-+||-=|
T Consensus 1 ~r~~~~~GK--GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGK--GGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEES--TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 899999983 377999999999999999999999999999543
No 184
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=78.26 E-value=4.6 Score=38.88 Aligned_cols=40 Identities=40% Similarity=0.387 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|+-|-|+|- ||-||-..+.-+-..|+.+|++|..+|.|+.
T Consensus 1 m~vi~i~G~--~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY--SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 788888887 8999999999999999999999999999875
No 185
>PLN02929 NADH kinase
Probab=76.92 E-value=3.1 Score=44.30 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHH
Q 007533 308 SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 387 (599)
Q Consensus 308 ~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are 387 (599)
.++...+.+.|+..|+++.. +...++ . +.+.++|.||+-||-|+ ++.+++.+ .
T Consensus 33 ~~~~~~~~~~L~~~gi~~~~------v~r~~~-~--------------~~~~~~Dlvi~lGGDGT-----~L~aa~~~-~ 85 (301)
T PLN02929 33 KDTVNFCKDILQQKSVDWEC------VLRNEL-S--------------QPIRDVDLVVAVGGDGT-----LLQASHFL-D 85 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEE------eecccc-c--------------cccCCCCEEEEECCcHH-----HHHHHHHc-C
Confidence 34566778889999987632 111222 0 24578899999998763 67788888 7
Q ss_pred cCCCEEEEehh
Q 007533 388 HRIPYLGICLG 398 (599)
Q Consensus 388 ~~iP~LGICLG 398 (599)
.++|+|||=.|
T Consensus 86 ~~iPvlGIN~G 96 (301)
T PLN02929 86 DSIPVLGVNSD 96 (301)
T ss_pred CCCcEEEEECC
Confidence 78999999988
No 186
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.87 E-value=4.9 Score=42.56 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=52.2
Q ss_pred eEEEEEeecCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccc-cCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE-KENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~--DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~-~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
|+|+++.+...-. .....+.+.|+..|+.+.+. ...+..+..... ......+....+....+|-|++-||-|+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIE----EKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhhccccccccccccccchhhcccCCCEEEEECCcHH
Confidence 5799997654321 11235666787778766331 001111110000 0000000000122346899999998764
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 373 RGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
++.+++.+...++|+|||=+|.
T Consensus 77 -----~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 77 -----FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred -----HHHHHHHhcCCCCCEEEEecCC
Confidence 6778888877899999999886
No 187
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=76.78 E-value=4.3 Score=38.72 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=31.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
|.|+|- +|-||-.++..+-..|+.+|++|..+|-|
T Consensus 2 i~i~G~--~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGP--KNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 455664 79999999999999999999999999977
No 188
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=76.61 E-value=5 Score=36.49 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=33.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
|.++|. +|.||=.+++.++..|..+|.+|-.+-.||
T Consensus 2 i~~~Gk--gG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGK--GGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 677885 899999999999999999999999999999
No 189
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=76.45 E-value=3.8 Score=42.16 Aligned_cols=38 Identities=37% Similarity=0.626 Sum_probs=33.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
|.|+||-|= -|+||=.++|+||.-|..+|.||..|-+|
T Consensus 3 ~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCC-CCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 789999774 58899999999999999999999988665
No 190
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=76.35 E-value=4.2 Score=41.76 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=35.0
Q ss_pred cCCCEEEeCCC-CCCCc---hhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007533 359 KGADGILVPGG-FGNRG---VQGKILAAKYAREHRIPYLGICLGMQVA 402 (599)
Q Consensus 359 ~~~DGIlVPGG-fG~rg---~eg~i~aik~are~~iP~LGICLGmQll 402 (599)
+.+|.|+|||| +|... .+-.-..++..-+.+.++..||.|=-++
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~a 113 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTA 113 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHH
Confidence 78999999998 77643 3445677888888899999999986444
No 191
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=75.69 E-value=7 Score=36.16 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=33.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
-+|+|| .|.||=.+++-+-+.|+.+|++|...|-.+.
T Consensus 2 ~~~~~~---~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~ 38 (134)
T cd03109 2 MGFGTG---TDIGKTVATAILARALKEKGYRVAPLKPVQT 38 (134)
T ss_pred EEEeCC---CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 378998 6699999999999999999999999998876
No 192
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=75.32 E-value=4.4 Score=38.53 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=31.3
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 10 v~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
.-.|.||=.+|+.++..|..+|++|-.+..||..+.
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~ 41 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPN 41 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHH
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCccccc
Confidence 357899999999999999999999999999996543
No 193
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.19 E-value=8.3 Score=40.96 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=51.5
Q ss_pred EEEEEeecCCCc--chHHHHHHHHHHcCCcceeeeEEEEec-CCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 297 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIP-ACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 297 ~IaiVGkY~~l~--DaY~SIi~AL~haG~~~~v~v~i~wi~-s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
+|+++.+...-. .....+.+.|+..|+.+.+. -.... ...+..... ........+....+|-+++-||-|+
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~D~vi~lGGDGT- 80 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLD--EVGIKEGCIYTQDTV---GCHIVNKTELGQYCDLVAVLGGDGT- 80 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--cccccccchhccccc---cccccchhhcCcCCCEEEEECCcHH-
Confidence 699997765321 12335666788888766431 00000 000000000 0000001122346899999998763
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 374 GVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGICLGm 399 (599)
++.+++.+...++|+|||=+|.
T Consensus 81 ----~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 81 ----FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ----HHHHHHHhcccCCCEEEEecCC
Confidence 6778887777899999999886
No 194
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=74.62 E-value=29 Score=36.72 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=36.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
|-|-|+| .=-|.||=.+|+.++..|..+|.+|-.+-.||..+
T Consensus 94 ~vIav~~-~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 94 VVVAVIG-GRGGAGASTLAAALALAAARHGLRTLLVDADPWGG 135 (322)
T ss_pred eEEEEEc-CCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 4556655 45789999999999999999999999999999865
No 195
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=73.71 E-value=39 Score=31.20 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=33.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|-++++ -+|-||=.+++.++..|..+|.+|..+-.||+
T Consensus 2 i~~~~~-kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 2 IAVTSG-KGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 445555 78999999999999999999999999999983
No 196
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=72.55 E-value=6.7 Score=42.30 Aligned_cols=41 Identities=27% Similarity=0.479 Sum_probs=37.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
|-|.||| -.|.||=.+++.++..|..+|+||-.|-.||+-+
T Consensus 32 ~ii~v~g--kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~ 72 (329)
T cd02033 32 QIIAIYG--KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72 (329)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccc
Confidence 6788885 7999999999999999999999999999999964
No 197
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=72.30 E-value=7.3 Score=38.07 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=37.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
||-|.||++ -.|.||=.+++.++..|..+|.+|-.|-.||+-.
T Consensus 17 ~kvI~v~s~-kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 17 IKVLLITSV-KPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNS 59 (204)
T ss_pred CcEEEEecC-CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCh
Confidence 577888754 4688999999999999999999999999999853
No 198
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=72.28 E-value=7.2 Score=37.92 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
|.|+| .||-||-..|..|...|+..|.+|..+.+|=|..-.
T Consensus 2 i~i~G--~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 2 VGIAG--PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 67888 588899999999999999999999999999998755
No 199
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.95 E-value=7.9 Score=41.33 Aligned_cols=94 Identities=28% Similarity=0.315 Sum_probs=52.6
Q ss_pred EEEEEeecCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccC----CchhhhHHHHhccCCCEEEeCCCC
Q 007533 297 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKE----NPDAYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 297 ~IaiVGkY~~l~--DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~----~p~~y~~a~~~L~~~DGIlVPGGf 370 (599)
+|+++.+...-. .....+.+.|+..|+++.+. ...+..+....... +-..|........++|.|++-||-
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD 82 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVL----DAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGD 82 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe----echhhhhcccccccccccccccccchhhcccCCCEEEEEcCC
Confidence 599997754321 12345667788888776432 11111111000000 000000001223468999999987
Q ss_pred CCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 371 GNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 371 G~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
|+ ++.+++.+...++|+|||=+|.
T Consensus 83 GT-----~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 83 GT-----ILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred HH-----HHHHHHHhccCCCcEEEEecCC
Confidence 74 6788888888899999999875
No 200
>PRK07667 uridine kinase; Provisional
Probab=71.48 E-value=8 Score=37.93 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=36.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
.|.++|+ ||-||-.+|..|...|+..|.+|..+.+|.|+.
T Consensus 19 iIgI~G~--~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 19 ILGIDGL--SRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 5778886 788999999999999999999999999999874
No 201
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.42 E-value=6.2 Score=44.09 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=36.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
+.|.++| ..|.||=.+++.++..|+.+|++|.++-.|||-
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4677777 799999999999999999999999999999985
No 202
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.30 E-value=6.2 Score=44.07 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHH-HHHCCCeeEEeeeccccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVL-LKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~l-l~~~g~~v~~~k~dpyln 44 (599)
+.|+++| .+|.||..+++.++.. +..+|.+|.++-+|+|-.
T Consensus 224 ~vi~lvG--ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVG--PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4577887 6899999999999974 478899999999999763
No 203
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=71.09 E-value=3.1 Score=39.39 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-----hhHHHHHHHHHHH
Q 007533 313 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-----VQGKILAAKYARE 387 (599)
Q Consensus 313 SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg-----~eg~i~aik~are 387 (599)
.+.++++..|+++. +++..+.+. ....+.+.++|+|++.||--.+- ..++..+++.+..
T Consensus 4 ~~~~~f~~~g~~v~------~l~~~~~~~----------~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~ 67 (154)
T PF03575_consen 4 KFRKAFRKLGFEVD------QLDLSDRND----------ADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYR 67 (154)
T ss_dssp HHHHHHHHCT-EEE------ECCCTSCGH----------HHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEE------EEeccCCCh----------HHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 46778888897642 344332111 12445688999999999732221 1357788999888
Q ss_pred cCCCEEEEehhHHH
Q 007533 388 HRIPYLGICLGMQV 401 (599)
Q Consensus 388 ~~iP~LGICLGmQl 401 (599)
++.|+.|+-.|.-+
T Consensus 68 ~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 68 KGGVIIGTSAGAMI 81 (154)
T ss_dssp TTSEEEEETHHHHC
T ss_pred CCCEEEEEChHHhh
Confidence 99999999999855
No 204
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=70.87 E-value=7.3 Score=40.01 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=38.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~-~g~~v~~~k~dpyln~ 45 (599)
||.|-|+ | =.|+||=.+|..++..|.. +|+||-.|-+||-.|.
T Consensus 2 ~~vIav~-~-KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 2 TRKIAIY-G-KGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred ceEEEEE-c-CCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 3778888 6 8999999999999999997 6999999999999874
No 205
>CHL00175 minD septum-site determining protein; Validated
Probab=70.57 E-value=8.4 Score=39.69 Aligned_cols=45 Identities=31% Similarity=0.512 Sum_probs=38.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDA 47 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy-ln~d~ 47 (599)
|.|.|++| --|.||=.+|+.++..|..+|++|-.+-+||- -|++.
T Consensus 16 ~vi~v~s~-KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 16 RIIVITSG-KGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred eEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhh
Confidence 56777765 47899999999999999999999999999996 45553
No 206
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=69.98 E-value=24 Score=35.10 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=44.8
Q ss_pred EEEEEeecCCCcchHH-HHHHHHHHcCCcc---eeeeEEEEecCCCCCCccccCCchhhhHHHHh--ccCCCEEEeCCCC
Q 007533 297 RIAMVGKYTGLSDAYL-SILKALLHASVDL---RKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGF 370 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~-SIi~AL~haG~~~---~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIlVPGGf 370 (599)
|||++-. ...+.|. ++.+.++++.-+. ...+++...++.. +++...++.+. -.++|||++.+.
T Consensus 1 ~Ig~i~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~--------~~~~~~~~~~~~~~~~vdgiIi~~~- 69 (272)
T cd06300 1 KIGLSNS--YAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADG--------DVAQQIADIRNLIAQGVDAIIINPA- 69 (272)
T ss_pred CeEEecc--ccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC--------CHHHHHHHHHHHHHcCCCEEEEeCC-
Confidence 5777732 3344444 5777777666555 4433333444331 11111122222 258999999763
Q ss_pred CCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 371 GNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 371 G~rg~eg~i~aik~are~~iP~LGI 395 (599)
+. ......++.+.+.++|+..+
T Consensus 70 -~~--~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 70 -SP--TALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred -Ch--hhhHHHHHHHHHCCCeEEEE
Confidence 11 11123456677789998875
No 207
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=69.84 E-value=8.1 Score=39.77 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=39.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||-|-|. | =-|.||=.+|..++..|..+|+||-.|-+||=.|.
T Consensus 1 m~~iav~-~-KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 1 MRKVAIY-G-KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CCEEEEe-C-CCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 6777777 6 88999999999999999999999999999998874
No 208
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=69.65 E-value=8 Score=40.03 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc------cccCCC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP------YLNTDA 47 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp------yln~d~ 47 (599)
||-|.|.| +=-|.||=.++|.++..|+..|.+|..|-+|| .+|+|.
T Consensus 1 M~~iai~s-~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~ 52 (243)
T PF06564_consen 1 MKVIAIVS-PKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPL 52 (243)
T ss_pred CcEEEEec-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCC
Confidence 78888774 56688999999999999999999999999999 566653
No 209
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=69.18 E-value=10 Score=37.72 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.3
Q ss_pred HhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 356 ~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+.|+++|.||+...+++.-.....++++...+++.+++|+.-+
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 4689999999999876554556677888888899999999843
No 210
>PRK10037 cell division protein; Provisional
Probab=68.89 E-value=7.6 Score=39.44 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=34.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
||. +-...-=-|.||=.+|+.++..|..+|+||-.|-+||=-
T Consensus 1 ~~~-iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 1 MAI-LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred CcE-EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence 663 333344467899999999999999999999999999943
No 211
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=68.64 E-value=11 Score=37.26 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=35.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYL 43 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~-~g~~v~~~k~dpyl 43 (599)
+|-|.||| .-+|.||=.+|+.++..|-. .|.||-.|-.||.-
T Consensus 35 ~~vi~v~s-~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 35 NNLIMVTS-SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CeEEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 35566664 45899999999999999975 79999999999975
No 212
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=68.60 E-value=15 Score=35.91 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=53.4
Q ss_pred HhhHHHHhhhhcCCCCCCeeEEccc------ch-----HHHHHHHH-HHhcccCCCCCCCCcEEEEeeCccccccccc--
Q 007533 92 KIYQSVIDKERKGDYLGKTVQVVPH------IT-----DEIQDWIE-RVAMIPVDGKEGPVDVCVIELGGTIGDIESM-- 157 (599)
Q Consensus 92 kiy~~vi~ker~g~ylg~tvqviph------it-----~~i~~~i~-~~~~~p~d~~~~~~dv~i~e~ggtvgdies~-- 157 (599)
..|...++....-.+.+..++|+.. ++ ....+++. .+.. ..+||+|+|.+|.- |+-..
T Consensus 21 ~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~------~~~p~~vii~~G~N--D~~~~~~ 92 (204)
T cd01830 21 NRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS------QPGVRTVIILEGVN--DIGASGT 92 (204)
T ss_pred CcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc------CCCCCEEEEecccc--ccccccc
Confidence 5677777655554555666666653 11 23444443 4432 34799999998854 75332
Q ss_pred ----------hHHHHHHHhhhHcCCCCEEEEeeeeeeee
Q 007533 158 ----------PFIEALGQFSYRVGPGNFCLIHVSLVPVL 186 (599)
Q Consensus 158 ----------pf~ea~rq~~~~~g~~n~~~ihv~~vp~~ 186 (599)
-|.+.+++|-.+..+.+.-.|..|+-|+-
T Consensus 93 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P~~ 131 (204)
T cd01830 93 DFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITPFE 131 (204)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 27777888877776666666666666643
No 213
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.13 E-value=10 Score=39.61 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=28.4
Q ss_pred CCCEEEeCCCCCCCchhHHHHHHHHHHH--cCCCEEEEehhH
Q 007533 360 GADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICLGM 399 (599)
Q Consensus 360 ~~DGIlVPGGfG~rg~eg~i~aik~are--~~iP~LGICLGm 399 (599)
++|.+++=||-|+ ++.+++.+.. .++|++||=+|.
T Consensus 35 ~~Dlvi~iGGDGT-----~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDGT-----LLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcHH-----HHHHHHHhcccCCCCeEEEEeCCC
Confidence 5699999998663 6777887776 689999999885
No 214
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=68.04 E-value=9.9 Score=39.96 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=37.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||-|-|. | =.|+||=.+++.++..|...|+||-.|-.||-.|-
T Consensus 4 ~~~iai~-~-KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 4 LRQIAFY-G-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred ceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 5555554 3 67899999999999999999999999999998765
No 215
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=67.90 E-value=9.4 Score=40.87 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|.++| .+|.||=.+++.|+.+|+..|.+|..+-.|+|
T Consensus 115 ~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4577787 89999999999999999999999999999985
No 216
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=67.77 E-value=9.1 Score=36.35 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
++|++.| +.|-||+..+..|...|..+|++|..+..
T Consensus 1 ~~I~ieG--~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 1 MFIVFEG--IDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5788888 68999999999999999999999976554
No 217
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=67.55 E-value=13 Score=39.44 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=51.3
Q ss_pred EEEEEeecCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 297 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 297 ~IaiVGkY~~l~--DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+|+++.+...-. .....+.++|+..++.+.+. . ..+..+.... .+ .+ ...+....+|.||+-||-|+
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~--~--~~~~~~~~~~---~~-~~-~~~~~~~~~d~vi~~GGDGt-- 75 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFE--A--DTARNIGLTG---YP-AL-TPEEIGARADLAVVLGGDGT-- 75 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--c--chhhhcCccc---cc-cc-ChhHhccCCCEEEEECCcHH--
Confidence 599997765422 12346777788887765331 0 0011110000 00 00 01122347899999998663
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGm 399 (599)
++.+++.....++|+|||=+|.
T Consensus 76 ---~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 76 ---MLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ---HHHHHHHhcCCCCCEEEEcCCC
Confidence 6677777666789999998886
No 218
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=67.42 E-value=12 Score=36.87 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=33.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
+.|-|+|. ||-||=..+-.|-.+|+.+|++|..||.|.
T Consensus 7 ~ii~ivG~--sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 7 PLLAIAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred eEEEEECC--CCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 45667774 999999999999999999999999999753
No 219
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.38 E-value=83 Score=33.05 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=83.8
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l 82 (599)
.|.+.|- +|.||=.++..+...|..+|.+|..+-.|+|- .| -+++
T Consensus 77 ~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r---i~------------------------~~~q------ 121 (270)
T PRK06731 77 TIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IG------------------------TVQQ------ 121 (270)
T ss_pred EEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC---HH------------------------HHHH------
Confidence 5667776 89999999999999999899999999888762 11 0110
Q ss_pred CCCCcccchHhhHHHHhhhhcCCCCCCeeEEcc-cchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccc-ccccchHH
Q 007533 83 TRDNNITTGKIYQSVIDKERKGDYLGKTVQVVP-HITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG-DIESMPFI 160 (599)
Q Consensus 83 ~~~~n~ttgkiy~~vi~ker~g~ylg~tvqvip-hit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvg-dies~pf~ 160 (599)
.. + .++-+| +.+++ .=.+++.+.++++++ ..+.|++||...|..- | ..-+
T Consensus 122 --------------l~--~-~~~~~~--~~~~~~~~~~~l~~~l~~l~~------~~~~D~ViIDt~Gr~~~~---~~~l 173 (270)
T PRK06731 122 --------------LQ--D-YVKTIG--FEVIAVRDEAAMTRALTYFKE------EARVDYILIDTAGKNYRA---SETV 173 (270)
T ss_pred --------------HH--H-HhhhcC--ceEEecCCHHHHHHHHHHHHh------cCCCCEEEEECCCCCcCC---HHHH
Confidence 00 0 111123 22222 224567777777753 3468999999999963 2 3456
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEE
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~ 216 (599)
+.++++.....++. +|+ +++++ .|..=.+.-++..++ +.+|.+|.
T Consensus 174 ~el~~~~~~~~~~~---~~L----Vl~a~--~~~~d~~~~~~~f~~--~~~~~~I~ 218 (270)
T PRK06731 174 EEMIETMGQVEPDY---ICL----TLSAS--MKSKDMIEIITNFKD--IHIDGIVF 218 (270)
T ss_pred HHHHHHHhhhCCCe---EEE----EEcCc--cCHHHHHHHHHHhCC--CCCCEEEE
Confidence 77777765554432 333 34331 121123345555655 56677766
No 220
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=67.18 E-value=19 Score=36.89 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC---chhHHH-HHHHHHHHcC
Q 007533 314 ILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---GVQGKI-LAAKYAREHR 389 (599)
Q Consensus 314 Ii~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r---g~eg~i-~aik~are~~ 389 (599)
-+++|+.-.... ..+..|+...|+.+. |+ +.-..+++|||-.-+ ...+++ +.|+....++
T Consensus 19 tv~sLr~~~~p~---y~v~~V~~~~Li~Ep-----------W~--~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~G 82 (253)
T COG4285 19 TVRSLRLFAPPY---YAVDRVDAQFLIKEP-----------WE--ETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEG 82 (253)
T ss_pred HHHHHHhhccch---heEEEeeeheeecCc-----------ch--hceEEEEecCCCCchHHHHhcchhhhhHHHHHhcC
Confidence 455565554443 356678888776432 42 455678999985543 234443 3355556667
Q ss_pred CCEEEEehhH
Q 007533 390 IPYLGICLGM 399 (599)
Q Consensus 390 iP~LGICLGm 399 (599)
=-+||||.|-
T Consensus 83 G~fLGiCAG~ 92 (253)
T COG4285 83 GNFLGICAGG 92 (253)
T ss_pred CeEEEEeccc
Confidence 8999999984
No 221
>PRK13236 nitrogenase reductase; Reviewed
Probab=66.97 E-value=9.8 Score=39.98 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
+-|-| .| =-|+||=.+|..|+..|..+|+||-.+-.||..|-
T Consensus 7 ~~~~~-~G-KGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAF-YG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEE-EC-CCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 44445 44 77899999999999999999999999999998864
No 222
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.62 E-value=12 Score=39.86 Aligned_cols=37 Identities=30% Similarity=0.280 Sum_probs=30.1
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
..++|-+++-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 66 ~~~~Dlvi~iGGDGT-----lL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 66 DSSMKFAIVLGGDGT-----VLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred ccCcCEEEEEeCcHH-----HHHHHHHhcCCCCcEEEEeCCC
Confidence 346899999998773 6778888777899999998873
No 223
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.45 E-value=15 Score=39.01 Aligned_cols=88 Identities=23% Similarity=0.147 Sum_probs=50.7
Q ss_pred EEEEEeecCCCcch---HHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCC
Q 007533 297 RIAMVGKYTGLSDA---YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 373 (599)
Q Consensus 297 ~IaiVGkY~~l~Da---Y~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~r 373 (599)
+|+++.+...- .+ ...+.+.|+..|+.+.+. ...+..+.... .. .....+...++|.+++-||-|+
T Consensus 7 ~i~iv~~~~~~-~~~~~~~~i~~~l~~~g~~v~~~----~~~~~~~~~~~----~~-~~~~~~~~~~~d~vi~lGGDGT- 75 (292)
T PRK03378 7 CIGIVGHPRHP-TALTTHEMLYHWLTSKGYEVIVE----QQIAHELQLKN----VK-TGTLAEIGQQADLAIVVGGDGN- 75 (292)
T ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCccc----cc-ccchhhcCCCCCEEEEECCcHH-
Confidence 59999775432 12 235666787777765331 00011110000 00 0001122347899999998764
Q ss_pred chhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 374 GVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGICLGm 399 (599)
++.+++.+...++|+|||=+|.
T Consensus 76 ----~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 76 ----MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ----HHHHHHHhcCCCCeEEEEECCC
Confidence 6677777767789999999887
No 224
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=66.36 E-value=12 Score=38.35 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
|-|-|+ | =-|.||=.+++.|+..|..+|+||-.|-.||=.|.
T Consensus 3 ~iIav~-~-KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~ 44 (270)
T PRK13185 3 LVLAVY-G-KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDS 44 (270)
T ss_pred eEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Confidence 677777 6 89999999999999999999999999999995443
No 225
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.24 E-value=14 Score=39.09 Aligned_cols=85 Identities=27% Similarity=0.212 Sum_probs=51.3
Q ss_pred eEEEEEeecCCCcchH---HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLSDAY---LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY---~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~ 372 (599)
.+|+++.+... ++. ..+.+.|+..|+++.+. ...+..+.. + .+. ..+...++|-+++=||-|+
T Consensus 11 ~~i~ii~~~~~--~~~~~~~~i~~~l~~~g~~~~~~----~~~~~~~~~------~-~~~-~~~~~~~~Dlvi~iGGDGT 76 (287)
T PRK14077 11 KKIGLVTRPNV--SLDKEILKLQKILSIYKVEILLE----KESAEILDL------P-GYG-LDELFKISDFLISLGGDGT 76 (287)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHHCCCEEEEe----cchhhhhcc------c-ccc-hhhcccCCCEEEEECCCHH
Confidence 36999976543 332 35666677777766432 111111110 0 000 0122347899999998663
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 373 RGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
++.+++.+...++|+|||=+|.
T Consensus 77 -----~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 77 -----LISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred -----HHHHHHHhcCCCCcEEEEeCCC
Confidence 6778888877899999999886
No 226
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.26 E-value=11 Score=41.80 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+.|.++|- +|.||=.+++.++..+..+|.+|..+-.|||
T Consensus 207 ~ii~lvGp--tGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQ--TGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 56788884 6999999999999999999999999999998
No 227
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=64.84 E-value=29 Score=37.22 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=63.8
Q ss_pred cccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCCC
Q 007533 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNLQ 271 (599)
Q Consensus 192 ~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l~ 271 (599)
.|=---.-.++.|.+.| +|+||+|....=.. ..+|-|..+. -||+.-|=..- |=+.-|
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~egaa---~~~a~~~~~~--pvINaGDG~~q-HPTQ~L-------------- 143 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEEGAA---RLLAEFSGVN--PVINAGDGSHQ-HPTQAL-------------- 143 (316)
T ss_pred cccccHHHHHHHHHhhC--CCEEEEeCccccHH---HHHHHhcCCC--ceEECCCCCCC-CccHHH--------------
Confidence 44445677889999888 99999998765443 3455555554 28888776554 222111
Q ss_pred CCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCccee
Q 007533 272 GTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 327 (599)
Q Consensus 272 ~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v 327 (599)
|+-|+ +.+.+- ..+..+||+|||--. .-.-.|.+++|...|+++..
T Consensus 144 -------LDl~T-I~~~~G-~~~gl~iaivGDlkh-sRva~S~~~~L~~~ga~v~l 189 (316)
T COG0540 144 -------LDLYT-IREEFG-RLDGLKIAIVGDLKH-SRVAHSNIQALKRFGAEVYL 189 (316)
T ss_pred -------HHHHH-HHHHhC-CcCCcEEEEEccccc-hHHHHHHHHHHHHcCCEEEE
Confidence 11111 011111 134689999997542 22567999999999977655
No 228
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=64.76 E-value=9.7 Score=35.72 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 9 gv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+-=+|.||=.+|+.++..|..+|++|-.+-.||-
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3457899999999999999999999999998885
No 229
>PLN02727 NAD kinase
Probab=64.40 E-value=11 Score=45.68 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=53.5
Q ss_pred eEEEEEeecCCC-cchHHHHHHHHHHc-CCcceeeeEEEEecCCCCCCc-cccC--Cchh-hhHHH-HhccCCCEEEeCC
Q 007533 296 VRIAMVGKYTGL-SDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDA-TEKE--NPDA-YKAAW-KLLKGADGILVPG 368 (599)
Q Consensus 296 v~IaiVGkY~~l-~DaY~SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~-~~~~--~p~~-y~~a~-~~L~~~DGIlVPG 368 (599)
-+|+||+|+..- .+....+.+.|.+. |+.+.+ +.+..+.. .... .+.. |...+ +....+|.||+-|
T Consensus 679 rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~V-------E~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLG 751 (986)
T PLN02727 679 KTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLV-------EPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLG 751 (986)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEE-------ecchHHHhhccccccccceecccchhhcccCCCEEEEEC
Confidence 589999988641 11233577788876 766533 22111000 0000 0000 00011 2234689999999
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 369 GFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 369 GfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
|-|+ ++.+++.+...++|+|||=+|.
T Consensus 752 GDGT-----lLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 752 GDGV-----ILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred CcHH-----HHHHHHHhcCCCCCEEEEeCCC
Confidence 8764 6788888888899999999885
No 230
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.03 E-value=12 Score=39.35 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=50.1
Q ss_pred eEEEEEeecCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh-ccCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~--DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIlVPGGfG~ 372 (599)
|||+++.+.+... .....+.+.|+..++++.+.- ..++...... .. . .... ..++|.|++-||-|+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~----~~~~~~~~~~---~~---~-~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDS----ETYEHLPEFS---EE---D-VLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhcCccc---cc---c-cccccccCCCEEEEEeCcHH
Confidence 5899997665422 113367777888887764310 0011110000 00 0 0011 237899999998663
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 373 RGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
++.+++ ....++|++||=.|.
T Consensus 70 -----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 -----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -----HHHHHH-hcCCCCeEEEEeCCC
Confidence 556777 666789999998875
No 231
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=63.29 E-value=18 Score=36.97 Aligned_cols=42 Identities=36% Similarity=0.504 Sum_probs=35.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
|+ |.|+ | =.|.||=.+|+.++..|..+|+||-.+-.||=.|.
T Consensus 1 ~~-i~v~-g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~ 42 (267)
T cd02032 1 MV-LAVY-G-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDS 42 (267)
T ss_pred CE-EEEe-c-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 44 4555 4 88999999999999999999999999999995543
No 232
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.27 E-value=30 Score=30.20 Aligned_cols=79 Identities=18% Similarity=0.067 Sum_probs=47.0
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCC-CCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPAC-DLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~-~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
+|++||- ..+....+.+.++..|.... |.... ..+... ..+...+.++|.||++=++-+-..
T Consensus 1 ~vliVGG---~~~~~~~~~~~~~~~G~~~~------~hg~~~~~~~~~--------~~l~~~i~~aD~VIv~t~~vsH~~ 63 (97)
T PF10087_consen 1 SVLIVGG---REDRERRYKRILEKYGGKLI------HHGRDGGDEKKA--------SRLPSKIKKADLVIVFTDYVSHNA 63 (97)
T ss_pred CEEEEcC---CcccHHHHHHHHHHcCCEEE------EEecCCCCccch--------hHHHHhcCCCCEEEEEeCCcChHH
Confidence 4788983 33345566677777887653 33111 011000 013467899999999886654332
Q ss_pred hHHHHHHHHHHHcCCCEEE
Q 007533 376 QGKILAAKYAREHRIPYLG 394 (599)
Q Consensus 376 eg~i~aik~are~~iP~LG 394 (599)
+..+-+.|.+.++|+.=
T Consensus 64 --~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 64 --MWKVKKAAKKYGIPIIY 80 (97)
T ss_pred --HHHHHHHHHHcCCcEEE
Confidence 45566778888999763
No 233
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=62.44 E-value=8.4 Score=40.40 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=39.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
|||||-|= -|+||=..++|++.-|..-+-+|-+|-.||--|+-
T Consensus 20 KwifVGGK--GGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 20 KWIFVGGK--GGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eEEEEcCc--CCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 99999763 58899999999999999999999999999998873
No 234
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.29 E-value=12 Score=41.60 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~--~~g~~v~~~k~dpy 42 (599)
+.|++.|- +|.||=.+++.|+..+. ..|.+|..+..|||
T Consensus 222 ~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35666665 89999999999998886 67899999999998
No 235
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=60.17 E-value=16 Score=36.06 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=37.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
-|.|+| =-|.||=.+++.++..|..+|+||-.|-.||-.|.=
T Consensus 2 ~iav~g--KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~ 43 (212)
T cd02117 2 QIAIYG--KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADST 43 (212)
T ss_pred EEEEEC--CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence 367774 889999999999999999999999999999998753
No 236
>PRK06696 uridine kinase; Validated
Probab=60.09 E-value=19 Score=36.02 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
.|.|+| .||-||-.+|..|...|...|..|..+-+|=|..-
T Consensus 24 iI~I~G--~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 24 RVAIDG--ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 566777 58899999999999999999999999999999864
No 237
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=60.01 E-value=9.1 Score=39.04 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=37.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
||-|-|. | =.|.||=.+|+.|+..|..+| ||-.|-.||=.|.
T Consensus 2 ~~~iav~-~-KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~ 43 (264)
T PRK13231 2 MKKIAIY-G-KGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADT 43 (264)
T ss_pred ceEEEEE-C-CCCCcHHHHHHHHhcccCCCC-EEEEEeEccCccc
Confidence 6777777 6 899999999999999999999 9999999998664
No 238
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=59.62 E-value=68 Score=30.41 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.0
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 11 ~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
--|.||=.+|+.++..| .+|-.+-.||..
T Consensus 8 kgG~GKSt~a~nLA~~l----~~vlliD~D~~~ 36 (179)
T cd03110 8 KGGTGKTTVTAALAALL----KNVVLADCDVDA 36 (179)
T ss_pred CCCCCHHHHHHHHHHHH----hCcEEEECCCCC
Confidence 36889999999999999 899999999874
No 239
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=59.36 E-value=14 Score=40.86 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d 46 (599)
|-|.|+ .-=-|.||=.+|.-++..|..+|+||-+|-+||--|..
T Consensus 122 ~vIav~-n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt 165 (405)
T PRK13869 122 QVIAVT-NFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLS 165 (405)
T ss_pred eEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHH
Confidence 444444 22346799999999999999999999999999975543
No 240
>PRK11670 antiporter inner membrane protein; Provisional
Probab=58.85 E-value=17 Score=39.80 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=36.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
|.|-|+.| =-|.||=.+|+.|+..|...|+||-.+-.|||.+-
T Consensus 108 ~vIaV~S~-KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps 150 (369)
T PRK11670 108 NIIAVSSG-KGGVGKSSTAVNLALALAAEGAKVGILDADIYGPS 150 (369)
T ss_pred EEEEEeCC-CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 44555444 46889999999999999999999999999999874
No 241
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=56.73 E-value=13 Score=39.01 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=28.0
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 12 SGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 12 s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
-||||=.++|.+...|..+|+||-.|=+||--
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred CCcccChhhhHHHHHHHhccceeeEecccCCC
Confidence 38999999999999999999999999999964
No 242
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=56.62 E-value=32 Score=36.28 Aligned_cols=95 Identities=22% Similarity=0.341 Sum_probs=52.6
Q ss_pred EEEEEeecCCCcch-HHHHHHHHHHcCCcceee-------eEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC
Q 007533 297 RIAMVGKYTGLSDA-YLSILKALLHASVDLRKK-------LVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 297 ~IaiVGkY~~l~Da-Y~SIi~AL~haG~~~~v~-------v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG 368 (599)
||+++|-.-+...| |.+-+.|+.-. +..... ..|+-. +.|+--......+..-+...+.|...++|+|.+
T Consensus 32 rvgViGGc~eYTGAPYFaa~sa~~~G-aDL~HiFCe~~Aa~vIKsY-sPdLIVHP~l~~~~av~~i~k~L~RlhavVIGP 109 (306)
T KOG3974|consen 32 RVGVIGGCLEYTGAPYFAAISALRVG-ADLSHIFCEPEAAVVIKSY-SPDLIVHPVLDQENAVDIIEKLLQRLHAVVIGP 109 (306)
T ss_pred ceEEEcccccccCccHHHHHHHHHhc-cceeeeeechhHHHHHhhc-CCceeecccccCCchHhHHHHHHhheeEEEECC
Confidence 89999854444334 88777776543 222110 001111 111111111111111222334588999999999
Q ss_pred CCCCCc-h-hHHHHHHHHHHHcCCCEE
Q 007533 369 GFGNRG-V-QGKILAAKYAREHRIPYL 393 (599)
Q Consensus 369 GfG~rg-~-eg~i~aik~are~~iP~L 393 (599)
|-|... + ..+-..++|++++++|+.
T Consensus 110 GLGRdp~~~k~i~~iley~~~~dvP~V 136 (306)
T KOG3974|consen 110 GLGRDPAILKEIAKILEYLRGKDVPLV 136 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCcEE
Confidence 988743 2 456678999999999975
No 243
>PRK01184 hypothetical protein; Provisional
Probab=56.47 E-value=13 Score=35.58 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=22.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeE
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~ 35 (599)
|+.|++||+.-| ||+.+| ++++..|+.+-
T Consensus 1 ~~~i~l~G~~Gs--GKsT~a----~~~~~~g~~~i 29 (184)
T PRK01184 1 MKIIGVVGMPGS--GKGEFS----KIAREMGIPVV 29 (184)
T ss_pred CcEEEEECCCCC--CHHHHH----HHHHHcCCcEE
Confidence 789999998755 598854 36888887653
No 244
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.43 E-value=24 Score=36.61 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=45.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCch
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 375 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~ 375 (599)
|++++.+ .......+..+.+.|...|..+. |..... ....++|.|++-||-|+
T Consensus 1 m~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-----------------~~~~~~d~vi~iGGDGT--- 53 (256)
T PRK14075 1 MKLGIFY-REEKEKEAKFLKEKISKEHEVVE------FCEASA-----------------SGKVTADLIIVVGGDGT--- 53 (256)
T ss_pred CEEEEEe-CccHHHHHHHHHHHHHHcCCeeE------eecccc-----------------cccCCCCEEEEECCcHH---
Confidence 4677773 33333455667777877776442 332211 12357899999998663
Q ss_pred hHHHHHHHHHHHcCCCEEEEehhH
Q 007533 376 QGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 376 eg~i~aik~are~~iP~LGICLGm 399 (599)
++.+++.+ ++|+|||=.|.
T Consensus 54 --~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 54 --VLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred --HHHHHHHc---CCCEEEEeCCC
Confidence 45555554 89999999885
No 245
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.41 E-value=31 Score=39.95 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=57.2
Q ss_pred HHHHHhhhcC--CCCceEEEEEeecCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh
Q 007533 282 WTSRAEICDG--LHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 357 (599)
Q Consensus 282 W~~l~~~~~~--~~~~v~IaiVGkY~~l~--DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~ 357 (599)
++++.+.+.. ..+..+|+|+.+...-. +....+.+.|+..++.+.+. ...+..+... .+..+. ....
T Consensus 275 ~~~l~~~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~----~~~~~~~~~~----~~~~~~-~~~~ 345 (569)
T PRK14076 275 HKKLVGIFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELE----SFLYNKLKNR----LNEECN-LIDD 345 (569)
T ss_pred HHHHHHhhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEe----chhhhhhccc----cccccc-cccc
Confidence 4444444332 23457899997654221 12335667777777665331 0011111100 000000 0012
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
+.++|.||+-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 346 ~~~~dlvi~lGGDGT-----~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 346 IEEISHIISIGGDGT-----VLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred ccCCCEEEEECCcHH-----HHHHHHHhcCCCCCEEEEcCCC
Confidence 347899999998763 6778888777899999998875
No 246
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=55.27 E-value=11 Score=37.13 Aligned_cols=29 Identities=38% Similarity=0.728 Sum_probs=21.4
Q ss_pred cCCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 007533 11 VSGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (599)
Q Consensus 11 ~s~~gkgi~~~s~g~ll~~~--g~~v~~~k~ 39 (599)
.-|=|||-|+|++|..|++. |+||.++.+
T Consensus 9 ytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 9 YTGDGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EESSSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EeCCCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 45679999999999999986 567877654
No 247
>PF02424 ApbE: ApbE family; InterPro: IPR003374 This prokaryotic family of lipoproteins are related to ApbE, from Salmonella typhimurium. ApbE is involved in thiamine synthesis []. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) during the biosynthesis of the pyrimidine moiety of thiamine.; PDB: 2O34_B 2O18_C 1VRM_A 3PND_D.
Probab=55.23 E-value=9.9 Score=39.20 Aligned_cols=90 Identities=26% Similarity=0.421 Sum_probs=50.6
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeec--ccccCCC--------CCCCc---cccceEEEccCCccccCCCCccccc
Q 007533 11 VSGLGKGVTASSIGVLLKACGLRVTCIKID--PYLNTDA--------GTMSP---FEHGEVFVLDDGGEVDLDLGNYERF 77 (599)
Q Consensus 11 ~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d--pyln~d~--------gtmsp---~~hgevfv~~dg~e~dldlg~yerf 77 (599)
+.|++||-++--+..+|+..|.+=.++-+= =+.-=.+ |--+| -+.-.+.-+.|++=+= =|+||||
T Consensus 110 lggiaKGyavD~~~~~L~~~gi~~~lVn~GGdi~~~G~~~~g~~W~IgI~~P~~~~~~~~~~~l~~~avaT--Sg~y~r~ 187 (254)
T PF02424_consen 110 LGGIAKGYAVDRAAELLREAGITNALVNAGGDIRAIGSKPDGQPWRIGIEDPRDPGRILGVLELSNGAVAT--SGDYERY 187 (254)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTTSCEEEEETTEEEEESBCTTSSBEEEEEEETCTTCCEEEEEECCTSEEEE--EETTCCC
T ss_pred cchhHHHHHHHHHHHHHHHcCCCeEEEeCCCcEEEeccCCCCCeEEEEecccCCCCceeEEEEeCCcEEEe--ccCceee
Confidence 468999999999999999998754433221 0000000 11122 2222344444442110 2899999
Q ss_pred cCCCCCCCCcccchHhhHHHHhhhhcCCCC-CCeeE
Q 007533 78 MDIKLTRDNNITTGKIYQSVIDKERKGDYL-GKTVQ 112 (599)
Q Consensus 78 l~~~l~~~~n~ttgkiy~~vi~ker~g~yl-g~tvq 112 (599)
...+ |+.|+++|+- |.|.-. ....|
T Consensus 188 ~~~~---------g~~~~HIidP-~tG~p~~~~~~s 213 (254)
T PF02424_consen 188 FEID---------GKRYHHIIDP-RTGYPAESGIAS 213 (254)
T ss_dssp CCCT---------SCECES-BET-TTSSB-SSSEEE
T ss_pred EEEC---------CEEeeeeECC-CCCcCccCCcEE
Confidence 9654 8888888887 555544 44444
No 248
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=55.10 E-value=26 Score=35.79 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=58.0
Q ss_pred ceEEEEEeecCCCc---chHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCC
Q 007533 295 PVRIAMVGKYTGLS---DAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 370 (599)
Q Consensus 295 ~v~IaiVGkY~~l~---DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGf 370 (599)
..+|+.+ -+-+.. |-|. -..++|+..|+.+.- ++-.. .| -+.+...|..+|.|.|.||-
T Consensus 32 ~~~i~FI-PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~------L~l~~--------~~--~~~Ie~~l~~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFI-PTASVDSEDDFYVEKVRNALAKLGLEVSE------LHLSK--------PP--LAAIENKLMKADIIYVGGGN 94 (224)
T ss_pred CceEEEE-ecCccccchHHHHHHHHHHHHHcCCeeee------eeccC--------CC--HHHHHHhhhhccEEEECCch
Confidence 4589998 453322 2244 578889999988632 11111 01 01123457789999999972
Q ss_pred CCC-----chhHHHHHHHHHHHcCCCEEEEehhHHHH
Q 007533 371 GNR-----GVQGKILAAKYAREHRIPYLGICLGMQVA 402 (599)
Q Consensus 371 G~r-----g~eg~i~aik~are~~iP~LGICLGmQll 402 (599)
=-- .-.|....|+.+..+++|+.|+-.|.-+.
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceee
Confidence 110 11467788999999999999998886654
No 249
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=54.91 E-value=20 Score=40.23 Aligned_cols=39 Identities=31% Similarity=0.574 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
..|+++| .-|.||=.+++-++..|+..|++|..+-+|+|
T Consensus 96 ~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 96 QTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3577887 68999999999999999999999999999986
No 250
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=54.72 E-value=21 Score=37.68 Aligned_cols=40 Identities=25% Similarity=0.447 Sum_probs=34.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
.|.|. | =-|.||=.+|+.++..|..+|+||-.|-+||=.|
T Consensus 2 vIav~-g-KGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 2 IIAIY-G-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred EEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCC
Confidence 45666 4 6899999999999999999999999999999554
No 251
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=54.21 E-value=24 Score=40.23 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=29.3
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
.++|.||+-||-|+ ++.+++.+....+|+|||=+|.
T Consensus 261 ~~~DlVIsiGGDGT-----lL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 261 TKVDLVITLGGDGT-----VLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 47899999998774 6777887777789999998763
No 252
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=54.08 E-value=22 Score=38.62 Aligned_cols=39 Identities=31% Similarity=0.227 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
||.|-|+|. ||-||=.....+-..|+.+||+|..||-|.
T Consensus 205 ~~~~~~~g~--~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 205 PPLLGVVGY--SGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred ccEEEEecC--CCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 467888884 999999999999999999999999999764
No 253
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=54.02 E-value=22 Score=36.42 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=37.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
-|.|.| =-|.||=.+|..++..|..+|+||-.|-+||=.|.
T Consensus 2 ~ia~~g--KGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIYG--KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEeC--CCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 467774 78999999999999999999999999999998875
No 254
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=53.23 E-value=21 Score=40.22 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=35.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
||.|=|+|= |+-||-....-|=..|+.+||||..||=|.
T Consensus 1 MkVi~IvG~--sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGW--KDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEec--CCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 777778884 999999999999999999999999999653
No 255
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=52.73 E-value=22 Score=36.06 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=30.2
Q ss_pred CccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 007533 9 GVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (599)
Q Consensus 9 gv~s~~gkgi~~~s~g~ll~-~~g~~v~~~k~dpyln 44 (599)
..==|.||..+|.-++..|. .+|+||-.|-+||=-|
T Consensus 9 n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 9 NQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred ecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 33446799999999999999 6779999999999544
No 256
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.44 E-value=23 Score=34.75 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=37.7
Q ss_pred ccCCCEEEeCCCCCCCc-------------h-hHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcc
Q 007533 358 LKGADGILVPGGFGNRG-------------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 408 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg-------------~-eg~i~aik~are~~iP~LGICLGmQll~iefgr 408 (599)
...+|++++|||||... + .....+++..-+.++|+==||.-=-++..-||.
T Consensus 83 ~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~ 147 (217)
T COG3155 83 AEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF 147 (217)
T ss_pred HHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC
Confidence 35679999999999742 1 235667777778899998899887777665553
No 257
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=50.67 E-value=79 Score=31.15 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=55.7
Q ss_pred cchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc---ccc----------c
Q 007533 89 TTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI---GDI----------E 155 (599)
Q Consensus 89 ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtv---gdi----------e 155 (599)
++|++-.+.++. .|..+ -..++||-=-+.|+..+..++. .. .|++|+ .|||= .|+ -
T Consensus 27 ~sG~~l~~~L~~--ag~~~-~~~~iV~D~~~~I~~~l~~~~~------~~-~Dvvlt-tGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 27 KSGPLLVELLEE--AGHNV-AAYTIVPDDKEQIRATLIALID------ED-VDVVLT-TGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred cchhHHHHHHHH--cCCcc-ceEEEeCCCHHHHHHHHHHHhc------CC-CCEEEE-cCCccCCCCcCCHHHHHHHHhc
Confidence 499998888865 57777 7889999999999999999873 33 677665 89982 222 1
Q ss_pred cch-HHHHHHHhhhHc-CCC
Q 007533 156 SMP-FIEALGQFSYRV-GPG 173 (599)
Q Consensus 156 s~p-f~ea~rq~~~~~-g~~ 173 (599)
-+| |-|+||++.++. |..
T Consensus 96 eipGFgE~fR~~S~~~~g~~ 115 (169)
T COG0521 96 EIPGFGELFRRLSLEEIGPT 115 (169)
T ss_pred cCCcHHHHHHHhhhhcCCCc
Confidence 244 899999999998 543
No 258
>PRK15453 phosphoribulokinase; Provisional
Probab=50.20 E-value=21 Score=37.94 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=40.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtms 51 (599)
..|.|||| ||-||=.+|.++..+|+..|.++..+..|=|--.|-..|.
T Consensus 6 piI~ItG~--SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~ 53 (290)
T PRK15453 6 PIIAVTGS--SGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMK 53 (290)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHh
Confidence 36889997 8999999999999999999988888888877666655553
No 259
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.19 E-value=69 Score=31.95 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=44.4
Q ss_pred EEEEEeecCCC-cchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh--ccCCCEEEeCCCCCC
Q 007533 297 RIAMVGKYTGL-SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFGN 372 (599)
Q Consensus 297 ~IaiVGkY~~l-~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIlVPGGfG~ 372 (599)
|||++ +... .+.|. ++++.++.+..+....+.+ ..++.. +++.-..+.+. -.++|||++.+...
T Consensus 1 ~i~~i--~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~--~~~~~~-------~~~~~~~~i~~l~~~~vdgiii~~~~~- 68 (271)
T cd06312 1 KIAFV--THGPAGDPFWTVVKNGAEDAAKDLGVDVEY--RGPETF-------DVADMARLIEAAIAAKPDGIVVTIPDP- 68 (271)
T ss_pred CEEEe--cCCCCCCcHHHHHHHHHHHHHHHhCCEEEE--ECCCCC-------CHHHHHHHHHHHHHhCCCEEEEeCCCh-
Confidence 46776 2334 44544 5776666665555443332 233210 11111122222 25899999976321
Q ss_pred CchhHHHHHHHHHHHcCCCEEEEe
Q 007533 373 RGVQGKILAAKYAREHRIPYLGIC 396 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LGIC 396 (599)
......++.++++++|+.-+.
T Consensus 69 ---~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 69 ---DALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred ---HHhHHHHHHHHHCCCeEEEeC
Confidence 122345677788899988774
No 260
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=49.67 E-value=20 Score=34.96 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=32.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCe----eEEeeecccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLR----VTCIKIDPYL 43 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~----v~~~k~dpyl 43 (599)
|.|+|+ ||-||-.+|..|..+|...|.. +..+-+|-|.
T Consensus 2 IgI~G~--sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 2 IGIAGP--SGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEES--TTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred EEEECC--CCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 778886 7779999999999999999998 7777777664
No 261
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=49.65 E-value=12 Score=39.06 Aligned_cols=38 Identities=42% Similarity=0.555 Sum_probs=28.7
Q ss_pred hccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 357 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
...++|.|++-||-|+ ++.+++.+...++|+|||=.|.
T Consensus 73 ~~~~~D~ii~lGGDGT-----~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 73 LEEGVDLIIVLGGDGT-----FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp HCCCSSEEEEEESHHH-----HHHHHHHCTTST-EEEEEESSS
T ss_pred cccCCCEEEEECCCHH-----HHHHHHHhccCCCcEEeecCCC
Confidence 3589999999998553 5667777666789999998763
No 262
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=49.57 E-value=15 Score=39.61 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHH
Q 007533 308 SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 387 (599)
Q Consensus 308 ~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are 387 (599)
+++-.-+.+.|..+|++... +.-+++. +.+..+|.|+=.||-|+ ++.|+...+.
T Consensus 74 kn~~~~~~~~l~k~gieskl------v~R~~ls---------------q~i~waD~VisvGGDGT-----fL~Aasrv~~ 127 (395)
T KOG4180|consen 74 KNAIKFCQEELSKAGIESKL------VSRNDLS---------------QPIRWADMVISVGGDGT-----FLLAASRVID 127 (395)
T ss_pred HHHHHHHHHHHhhCCcceee------eehhhcc---------------CcCchhhEEEEecCccc-----eeehhhhhhc
Confidence 44556788999999998644 3334442 24788999999998775 3445555788
Q ss_pred cCCCEEEE
Q 007533 388 HRIPYLGI 395 (599)
Q Consensus 388 ~~iP~LGI 395 (599)
.++|++||
T Consensus 128 ~~~PViGv 135 (395)
T KOG4180|consen 128 DSKPVIGV 135 (395)
T ss_pred cCCceeee
Confidence 89999998
No 263
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=49.51 E-value=15 Score=36.33 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 007533 12 SGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (599)
Q Consensus 12 s~~gkgi~~~s~g~ll~~~--g~~v~~~k~ 39 (599)
-|=|||-|+|++|..|++. |+||.++.|
T Consensus 28 tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 28 TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 4669999999999999985 678888765
No 264
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=49.16 E-value=34 Score=34.90 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=32.1
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 007533 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 11 ~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~ 45 (599)
=-|.||=.+|+.|+..|..+|+||-.|-+||=.|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~ 42 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDS 42 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccc
Confidence 67899999999999999999999999999996554
No 265
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=49.11 E-value=21 Score=38.33 Aligned_cols=139 Identities=26% Similarity=0.412 Sum_probs=89.9
Q ss_pred EEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCC
Q 007533 5 LVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTR 84 (599)
Q Consensus 5 ~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l~~ 84 (599)
=+|| +=|.||-....-+|+.|..+|+||.+|-+||= |||-=|-+ ||+==|+-......
T Consensus 55 GITG--~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS--------Sp~TGGsi------------LGDRiRM~~~~~~~ 112 (323)
T COG1703 55 GITG--VPGAGKSTLIEALGRELRERGHRVAVLAVDPS--------SPFTGGSI------------LGDRIRMQRLAVDP 112 (323)
T ss_pred EecC--CCCCchHHHHHHHHHHHHHCCcEEEEEEECCC--------CCCCCccc------------cccHhhHHhhccCC
Confidence 3555 46889999999999999999999999999994 78776665 78777776655322
Q ss_pred C----CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHH
Q 007533 85 D----NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (599)
Q Consensus 85 ~----~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ 160 (599)
+ +..|.| +|| -++.+..+.|.-+- ..++|++||| |||==-|--
T Consensus 113 ~vFiRs~~srG--------------~lG-------GlS~at~~~i~~ld-------AaG~DvIIVE---TVGvGQsev-- 159 (323)
T COG1703 113 GVFIRSSPSRG--------------TLG-------GLSRATREAIKLLD-------AAGYDVIIVE---TVGVGQSEV-- 159 (323)
T ss_pred CeEEeecCCCc--------------cch-------hhhHHHHHHHHHHH-------hcCCCEEEEE---ecCCCcchh--
Confidence 2 222222 333 36677777776653 4689999999 555211111
Q ss_pred HHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEe
Q 007533 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (599)
Q Consensus 161 ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R 217 (599)
++ +-.+|.++|-.+...|. +.|-==+.+.+++ |++++.
T Consensus 160 -~I-----------~~~aDt~~~v~~pg~GD----~~Q~iK~GimEia---Di~vIN 197 (323)
T COG1703 160 -DI-----------ANMADTFLVVMIPGAGD----DLQGIKAGIMEIA---DIIVIN 197 (323)
T ss_pred -HH-----------hhhcceEEEEecCCCCc----HHHHHHhhhhhhh---heeeEe
Confidence 11 12245555555655565 4455445666665 877775
No 266
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=48.62 E-value=31 Score=35.76 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=34.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|+=|.+..+-=.|.||=.+|+.++..|..+|.+|.++-.||=
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 333444444568999999999999999999999999999985
No 267
>PRK06953 short chain dehydrogenase; Provisional
Probab=47.99 E-value=24 Score=34.53 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=25.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
||.++||||. ++||.-++. .|...|++|..+-.+
T Consensus 1 ~~~vlvtG~s-g~iG~~la~-----~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGAS-RGIGREFVR-----QYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcCC-CchhHHHHH-----HHHhCCCEEEEEECC
Confidence 7899999996 888876554 455679999887443
No 268
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.93 E-value=23 Score=33.58 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=27.5
Q ss_pred hccCCCEEEeCCCCCCCchhHHHHHHHHHHH--cCCCEEEEeh
Q 007533 357 LLKGADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICL 397 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~rg~eg~i~aik~are--~~iP~LGICL 397 (599)
.+.++|.|++-||-.-|.+--...-+|...| .+.|+.|+|+
T Consensus 82 ~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 82 ELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred ccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH
Confidence 4677999999999766654222333333333 3579999996
No 269
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=47.85 E-value=81 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=21.7
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+...+ .....++.+++.++|+..+
T Consensus 56 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDV----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChH----HhHHHHHHHHHCCCeEEEE
Confidence 57999988653221 1223467778889998755
No 270
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.83 E-value=15 Score=38.31 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=29.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
.++|.|++-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 32 ~~~D~vi~iGGDGT-----~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDGF-----FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHhcCCCCcEEEEecCC
Confidence 46799999998663 6778888777899999999884
No 271
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=47.67 E-value=29 Score=33.54 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=31.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
-|++|| .||-||=.+|..+-.-|+++|.+|..+--|
T Consensus 4 vIwltG--lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTG--LSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEES--STTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 578888 799999999999999999999998877655
No 272
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=47.63 E-value=2.2e+02 Score=30.30 Aligned_cols=130 Identities=20% Similarity=0.241 Sum_probs=70.6
Q ss_pred CchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCCCCCCC
Q 007533 196 PTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNLQGTTK 275 (599)
Q Consensus 196 ptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l~~~~~ 275 (599)
-.+.+++-|.+. .|+|++|.... ..-+.++-.+.++ ||+.-| .-+|=...| .+.. -+
T Consensus 87 sl~Dt~~~l~~~---~D~iv~R~~~~---~~~~~~a~~~~vP---VINag~--~~~HPtQaL---~Dl~----Ti----- 143 (304)
T PRK00779 87 PIEDTARVLSRY---VDAIMIRTFEH---ETLEELAEYSTVP---VINGLT--DLSHPCQIL---ADLL----TI----- 143 (304)
T ss_pred CHHHHHHHHHHh---CCEEEEcCCCh---hHHHHHHHhCCCC---EEeCCC--CCCChHHHH---HHHH----HH-----
Confidence 444455555444 89999997643 3445555555554 888854 345444333 1111 00
Q ss_pred chhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-c-----c---C
Q 007533 276 EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-E-----K---E 346 (599)
Q Consensus 276 ~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-~-----~---~ 346 (599)
+ +... .-+.++|+++|+.. ..-.|.+++|...|+++.+ +.++.+.... . + .
T Consensus 144 ------~----e~~g-~l~gl~i~~vGd~~---~v~~Sl~~~l~~~g~~v~~------~~P~~~~~~~~~~~~~~~~~g~ 203 (304)
T PRK00779 144 ------Y----EHRG-SLKGLKVAWVGDGN---NVANSLLLAAALLGFDLRV------ATPKGYEPDPEIVEKIAKETGA 203 (304)
T ss_pred ------H----HHhC-CcCCcEEEEEeCCC---ccHHHHHHHHHHcCCEEEE------ECCcccCCCHHHHHHHHHHcCC
Confidence 0 1111 12357999999832 2678999999999987655 3333332210 0 0 0
Q ss_pred CchhhhHHHHhccCCCEEEeCC
Q 007533 347 NPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 347 ~p~~y~~a~~~L~~~DGIlVPG 368 (599)
.-..++...+.++++|-|....
T Consensus 204 ~~~~~~d~~~a~~~aDvvy~~~ 225 (304)
T PRK00779 204 SIEVTHDPKEAVKGADVVYTDV 225 (304)
T ss_pred eEEEEcCHHHHhCCCCEEEecC
Confidence 0112334456688999887753
No 273
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=47.01 E-value=42 Score=30.79 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|.|-|+| ..+|.||-.+|..++..|..+|.+|-.+-+|++
T Consensus 1 k~i~v~s-~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 4455553 567999999999999999999999999988874
No 274
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=46.72 E-value=34 Score=32.05 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=29.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
+-|.|+|. |+-||=..+..|-..|+.+|++|..+|=+
T Consensus 1 pvv~VvG~--~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGP--KNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 35778885 89999999999999999999999988754
No 275
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=46.52 E-value=16 Score=37.83 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.7
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
+.++|.|++=||-|+ ++.+++.+...++|+|||=+|.
T Consensus 23 ~~~~Dlvi~iGGDGT-----lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDGF-----MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCHH-----HHHHHHHhcCCCCeEEEEeCCC
Confidence 467899999998663 6778888777889999999885
No 276
>PRK08267 short chain dehydrogenase; Provisional
Probab=46.24 E-value=23 Score=35.32 Aligned_cols=31 Identities=39% Similarity=0.698 Sum_probs=24.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
||-++||||. +|||+-+ .+.|-.+|++|..+
T Consensus 1 mk~vlItGas-g~iG~~l-----a~~l~~~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAA-SGIGRAT-----ALLFAAEGWRVGAY 31 (260)
T ss_pred CcEEEEeCCC-chHHHHH-----HHHHHHCCCeEEEE
Confidence 7899999987 6777654 45566789999876
No 277
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.14 E-value=48 Score=35.24 Aligned_cols=89 Identities=24% Similarity=0.237 Sum_probs=49.5
Q ss_pred EEEEEeecCCCc--chHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc
Q 007533 297 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 374 (599)
Q Consensus 297 ~IaiVGkY~~l~--DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg 374 (599)
+|+++.+-..-. +....+.+.|+..++++.+. ...++.+..... .+.......+.+|-|++-||-|+
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~----~~~~~~~~~~~~-----~~~~~~~~~~~~d~vi~~GGDGt-- 74 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILD----EETAEVLPGHGL-----QTVSRKLLGEVCDLVIVVGGDGS-- 74 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCcccc-----cccchhhcccCCCEEEEEeCcHH--
Confidence 599996544321 23446667777777665331 111111110000 00000112346899999997663
Q ss_pred hhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 375 VQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGICLGm 399 (599)
.+.+++.+...++|+|||=.|.
T Consensus 75 ---~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 75 ---LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred ---HHHHHHHhcCCCCCEEEEeCCc
Confidence 5566777767799999999875
No 278
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=45.53 E-value=65 Score=30.61 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=22.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++++.... ...+.+.+.+.++|++.+
T Consensus 57 ~~~d~ii~~~~~~~-----~~~~~~~~~~~~ip~v~~ 88 (269)
T cd01391 57 QGVDGIIGPPSSSS-----ALAVVELAAAAGIPVVSL 88 (269)
T ss_pred cCCCEEEecCCCHH-----HHHHHHHHHHcCCcEEEe
Confidence 47999998875321 112667778889999776
No 279
>PRK05693 short chain dehydrogenase; Provisional
Probab=45.53 E-value=23 Score=35.80 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=24.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
||-++|||| -||||+.++ ..|..+|++|...-
T Consensus 1 mk~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGC-SSGIGRALA-----DAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 789999998 478887655 45567899887653
No 280
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=45.31 E-value=80 Score=31.11 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=20.2
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 393 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~L 393 (599)
.++||||+.+.... ...++.++++++|+.
T Consensus 54 ~~vdgiIi~~~~~~------~~~~~~l~~~~ipvV 82 (265)
T cd06299 54 QRVDGIIVVPHEQS------AEQLEDLLKRGIPVV 82 (265)
T ss_pred cCCCEEEEcCCCCC------hHHHHHHHhCCCCEE
Confidence 47999999875322 124677788888974
No 281
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.05 E-value=44 Score=31.77 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcccCCCCCCCCcEEEEeeCcc--ccccccchHHHHHHHhhhHcCC--CCEEEEeeeeee
Q 007533 119 DEIQDWIERVAMIPVDGKEGPVDVCVIELGGT--IGDIESMPFIEALGQFSYRVGP--GNFCLIHVSLVP 184 (599)
Q Consensus 119 ~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggt--vgdies~pf~ea~rq~~~~~g~--~n~~~ihv~~vp 184 (599)
.++.+++..+. ..+||+|+|.+|+- .......-|.+.+++|-..+.. .+.-.+=+++.|
T Consensus 54 ~~~~~~l~~~~-------~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~ 116 (191)
T cd01836 54 ADLLRQLAPLP-------ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHhcc-------cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 44556666532 46899999999983 1112234577888887777654 344444445433
No 282
>PRK07102 short chain dehydrogenase; Provisional
Probab=44.56 E-value=24 Score=34.90 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=25.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
||-|+||||- +|||+.++- .|-++|++|..+=.++
T Consensus 1 ~~~vlItGas-~giG~~~a~-----~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGAT-SDIARACAR-----RYAAAGARLYLAARDV 35 (243)
T ss_pred CcEEEEEcCC-cHHHHHHHH-----HHHhcCCEEEEEeCCH
Confidence 7889999986 788876554 4456799888775443
No 283
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=44.24 E-value=2.8e+02 Score=29.67 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=81.0
Q ss_pred chHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCC
Q 007533 157 MPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHV 236 (599)
Q Consensus 157 ~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v 236 (599)
.-|--|++|| | .++.++... .+.--|--+.+-+++-|.+.| .|+|++|... ..+-...+..+.|
T Consensus 61 ~SFe~A~~~L----G-g~~i~l~~~------~~~~~kgEs~~Dta~vls~y~--~D~iv~R~~~---~~~~~~~a~~~~v 124 (305)
T PRK00856 61 LSFELAAKRL----G-ADVINFSAS------TSSVSKGETLADTIRTLSAMG--ADAIVIRHPQ---SGAARLLAESSDV 124 (305)
T ss_pred HHHHHHHHHc----C-CcEEEeCCC------cccCCCCcCHHHHHHHHHhcC--CCEEEEeCCC---hHHHHHHHHHCCC
Confidence 3466777776 4 234433221 111222224444445454443 8999999653 3455556666555
Q ss_pred CCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCCCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHH
Q 007533 237 PEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILK 316 (599)
Q Consensus 237 ~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~ 316 (599)
| ||+.-| +..+|=...|--+.. |.++++ .-+.+||++||+... ...-.|.+.
T Consensus 125 P---VINa~~-g~~~HPtQ~LaDl~T-i~e~~G----------------------~l~g~kv~~vGD~~~-~~v~~Sl~~ 176 (305)
T PRK00856 125 P---VINAGD-GSHQHPTQALLDLLT-IREEFG----------------------RLEGLKVAIVGDIKH-SRVARSNIQ 176 (305)
T ss_pred C---EEECCC-CCCCCcHHHHHHHHH-HHHHhC----------------------CCCCCEEEEECCCCC-CcHHHHHHH
Confidence 3 666643 123343332211111 111111 123579999986421 125678888
Q ss_pred HHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC
Q 007533 317 ALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 317 AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG 368 (599)
++...|+++.+ +.++.+++... .+-..++...+.++++|-|....
T Consensus 177 ~~~~~g~~~~~------~~P~~~~~~~~-~~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 177 ALTRLGAEVRL------IAPPTLLPEGM-PEYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred HHHHcCCEEEE------ECCcccCcccc-cceEEECCHHHHhCCCCEEEECC
Confidence 99888887654 33333322111 00123344456789999776644
No 284
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.22 E-value=48 Score=34.74 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=26.1
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHc-CCCEEEEeh-h
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREH-RIPYLGICL-G 398 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~-~iP~LGICL-G 398 (599)
.++|.+++-||-|+ ++.+++.+... ++|+|||=+ |
T Consensus 38 ~~~D~vi~lGGDGT-----~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 38 KNANIIVSIGGDGT-----FLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CCccEEEEECCcHH-----HHHHHHHhcccCCCeEEeEecCC
Confidence 35789999998663 56666665443 789999998 6
No 285
>PRK06179 short chain dehydrogenase; Provisional
Probab=44.16 E-value=26 Score=35.23 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=26.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
|.|+||||- ||||+ ++.+.|..+|++|..+--||
T Consensus 5 ~~vlVtGas-g~iG~-----~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGAS-SGIGR-----ATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEecCC-CHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 679999985 77775 44566778899999877665
No 286
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=44.09 E-value=29 Score=35.57 Aligned_cols=46 Identities=30% Similarity=0.559 Sum_probs=35.0
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhHHHHHHHhcccc
Q 007533 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 410 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGmQll~iefgr~V 410 (599)
..++||++|+= |+|++.+ ++|.. ..+|+.|||----+.+...||++
T Consensus 67 ~~GvdaiiIaC-f~DPgl~----~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 67 EQGVDAIIIAC-FSDPGLA----AARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred ccCCcEEEEEe-cCChHHH----HHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 35799999987 8887663 33332 37999999998888888888875
No 287
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=43.90 E-value=89 Score=30.21 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=22.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+..... .. ++.+.++++|+..+
T Consensus 54 ~~~d~iii~~~~~~~-----~~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 54 RRVDGIILAPSRLDD-----EL-LEELAALGIPVVLV 84 (264)
T ss_pred cCcCEEEEecCCcch-----HH-HHHHHHcCCCEEEe
Confidence 589999998754321 12 67778889998765
No 288
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=43.85 E-value=2.5e+02 Score=30.37 Aligned_cols=101 Identities=13% Similarity=0.185 Sum_probs=58.3
Q ss_pred cccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCCC
Q 007533 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNLQ 271 (599)
Q Consensus 192 ~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l~ 271 (599)
.|--....+++-|.+ ..|+|++|... ...-+.+|-++.+| ||+.-+ ..+|=...|--++. |.++++
T Consensus 86 ~kgEsl~DTarvls~---y~D~iv~R~~~---~~~~~~~a~~~~vP---VINa~~--~~~HPtQaL~Dl~T-i~e~~g-- 151 (334)
T PRK01713 86 GHKESMKDTARVLGR---MYDAIEYRGFK---QSIVNELAEYAGVP---VFNGLT--DEFHPTQMLADVLT-MIENCD-- 151 (334)
T ss_pred CCCcCHHHHHHHHHH---hCCEEEEEcCc---hHHHHHHHHhCCCC---EEECCC--CCCChHHHHHHHHH-HHHHcC--
Confidence 343355555555544 48999999763 45566666666663 788744 44554433311111 111111
Q ss_pred CCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCccee
Q 007533 272 GTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 327 (599)
Q Consensus 272 ~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v 327 (599)
..-+.++|++||+-. . ..-.|.+.++...|+++.+
T Consensus 152 -------------------~~l~gl~ia~vGD~~-~-~v~~Sl~~~~~~~g~~v~~ 186 (334)
T PRK01713 152 -------------------KPLSEISYVYIGDAR-N-NMGNSLLLIGAKLGMDVRI 186 (334)
T ss_pred -------------------CCcCCcEEEEECCCc-c-CHHHHHHHHHHHcCCEEEE
Confidence 011357999999731 1 2567888888888887654
No 289
>PRK08727 hypothetical protein; Validated
Probab=43.78 E-value=17 Score=36.86 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=43.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDD 63 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~d 63 (599)
.++++|+ ||.||==.+.+++.-+...|++|..+-.+-+...=+..++-++.=.+.|+||
T Consensus 43 ~l~l~G~--~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGP--AGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeC
Confidence 5899998 9999999999999999999999988766543322122333444446888886
No 290
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=43.63 E-value=29 Score=31.44 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=50.5
Q ss_pred CcccchHhhHHHHhhhhcCCCCCCeeEEccc-----chHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccc---
Q 007533 86 NNITTGKIYQSVIDKERKGDYLGKTVQVVPH-----ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM--- 157 (599)
Q Consensus 86 ~n~ttgkiy~~vi~ker~g~ylg~tvqviph-----it~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~--- 157 (599)
.+.+++.-|...+.++ .+..+.|... -+..+..++.+... ++ ....||++||++|+ .|+-..
T Consensus 11 ~~~~~~~~~~~~l~~~-----~~~~~~~~n~~~~G~~~~~~~~~~~~~~~-~~--~~~~~d~vvi~~G~--ND~~~~~~~ 80 (179)
T PF13472_consen 11 YGAPNNGSYPDRLAER-----PGRGIEVYNLGVSGATSSDFLARLQRDVL-RF--KDPKPDLVVISFGT--NDVLNGDEN 80 (179)
T ss_dssp TTTSSCTSHHHHHHHH-----HTCCEEEEEEE-TT-BHHHHHHHHHHHCH-HH--CGTTCSEEEEE--H--HHHCTCTTC
T ss_pred CCCCCCCCHHHHHHHh-----hCCCcEEEEEeecCccHhHHHHHHHHHHh-hh--ccCCCCEEEEEccc--ccccccccc
Confidence 3444557788888885 4444444422 12222222332110 00 25689999999995 555442
Q ss_pred -----hHHHHHHHhhhHcCCCCEEEEeeeeeeeecC
Q 007533 158 -----PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV 188 (599)
Q Consensus 158 -----pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~ 188 (599)
-|.++++++...+.+.. -.+.+++.|+...
T Consensus 81 ~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~ 115 (179)
T PF13472_consen 81 DTSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPD 115 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSS
T ss_pred cccHHHHHHHHHHHHHhhcccC-cEEEecCCCcccc
Confidence 27888899888886666 5555555566544
No 291
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=43.36 E-value=43 Score=32.13 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
++|+|+|. .|-||...+..|-.-|...|++|...
T Consensus 4 ~~IvieG~--~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGI--DGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 78999995 78899999999999999999998643
No 292
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=42.72 E-value=83 Score=35.13 Aligned_cols=37 Identities=19% Similarity=0.471 Sum_probs=26.4
Q ss_pred CCcEEEEe-eCccccccc-cchHHHHHHHhhhHcCCCCEEEE
Q 007533 139 PVDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLI 178 (599)
Q Consensus 139 ~~dv~i~e-~ggtvgdie-s~pf~ea~rq~~~~~g~~n~~~i 178 (599)
+.=.+|+| +-|.-|++. +.-|++++|++..+.| +++|
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g---~llI 256 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHG---ILLI 256 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcC---CEEE
Confidence 34568888 556667764 4569999999999875 4554
No 293
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=42.64 E-value=49 Score=32.82 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
|.|++-| .+|.||=.|+|=|+..++.+|.+|..+-+|.|-
T Consensus 2 ~vi~lvG--ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVG--PTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEEC--CCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 5667777 489999999999999999999999999999985
No 294
>PRK09271 flavodoxin; Provisional
Probab=42.11 E-value=1.2e+02 Score=28.72 Aligned_cols=55 Identities=18% Similarity=0.029 Sum_probs=28.3
Q ss_pred eEEEEEeecCCCcchHH----HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC
Q 007533 296 VRIAMVGKYTGLSDAYL----SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~----SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG 368 (599)
+||.|+ |.+...+=. .+.+.|+..|.++.+ .-++..++.+. ...+.++|+|+|.-
T Consensus 1 mkv~Iv--Y~S~tGnTe~~A~~ia~~l~~~g~~v~~----~~~~~~~~~~~------------~~~~~~~d~vilgt 59 (160)
T PRK09271 1 MRILLA--YASLSGNTREVAREIEERCEEAGHEVDW----VETDVQTLAEY------------PLDPEDYDLYLLGT 59 (160)
T ss_pred CeEEEE--EEcCCchHHHHHHHHHHHHHhCCCeeEE----Eeccccccccc------------ccCcccCCEEEEEC
Confidence 467777 665544433 345556666665432 22222222110 02356789998876
No 295
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=42.07 E-value=37 Score=35.20 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=27.9
Q ss_pred CEEEEEeCCccCCcchHHHHH-HHHHHHHHCCCeeEEee
Q 007533 1 MKYVLVTGGVVSGLGKGVTAS-SIGVLLKACGLRVTCIK 38 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~-s~g~ll~~~g~~v~~~k 38 (599)
||.+|++||+ |-.+..+ .+..-|+.+|+.|+.+-
T Consensus 1 ~~i~~~~g~~----~g~~~~~~~La~~L~~~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGT----GGHIFPALAVAEELIKRGVEVLWLG 35 (348)
T ss_pred CeEEEEeCcc----HHHHhHHHHHHHHHHhCCCEEEEEe
Confidence 7989999988 4456554 89999999999998874
No 296
>PRK14528 adenylate kinase; Provisional
Probab=41.35 E-value=35 Score=33.25 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll 27 (599)
||-|+|+|+ +|-||+..|.-|+.-+
T Consensus 1 ~~~i~i~G~--pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 1 MKNIIFMGP--PGAGKGTQAKILCERL 25 (186)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 788999998 9999999988876543
No 297
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=41.20 E-value=42 Score=33.60 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=28.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
-|..|| +||-||-.+|..+-..|.++|++|..
T Consensus 25 viW~TG--LSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 25 VIWFTG--LSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred EEEeec--CCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 467787 89999999999999999999997543
No 298
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=40.82 E-value=28 Score=38.28 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=30.4
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeee-cccccCC
Q 007533 13 GLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNTD 46 (599)
Q Consensus 13 ~~gkgi~~~s~g~ll~~~g~~v~~~k~-dpyln~d 46 (599)
|.||=.+++.++..|..+|+||-+|-+ ||=-|.-
T Consensus 117 GVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt 151 (387)
T PHA02519 117 GVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTAS 151 (387)
T ss_pred CCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcc
Confidence 569999999999999999999999996 9976643
No 299
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.81 E-value=1.1e+02 Score=30.15 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=21.2
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.++. .. .....++.+.+.++|+..+
T Consensus 54 ~~vdgii~~~~~--~~--~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 54 QKVDAIIIQHGR--AE--VLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred cCCCEEEEecCC--hh--hhHHHHHHHHHcCCCEEEe
Confidence 489999997632 11 1234466777888997654
No 300
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.48 E-value=1.3e+02 Score=29.89 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=21.2
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+. +. +.....++.+++.++|+.-+
T Consensus 56 ~~~dgiIi~~~--~~--~~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 56 AKVDLILLNAV--DS--KGIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred hCCCEEEEeCC--Ch--hHhHHHHHHHHHCCCeEEEe
Confidence 58999999652 21 11234567777788887665
No 301
>PRK08177 short chain dehydrogenase; Provisional
Probab=40.34 E-value=42 Score=32.80 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=26.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
||-++||||. +|||+. +.+.|..+|++|..+-.+|
T Consensus 1 ~k~vlItG~s-g~iG~~-----la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 1 KRTALIIGAS-RGLGLG-----LVDRLLERGWQVTATVRGP 35 (225)
T ss_pred CCEEEEeCCC-chHHHH-----HHHHHHhCCCEEEEEeCCC
Confidence 7889999994 666654 5566778899998775543
No 302
>PRK03846 adenylylsulfate kinase; Provisional
Probab=40.27 E-value=44 Score=32.65 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=32.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
+.|.++|. ||-||=.+|..|..+|..+|..+-.+.-|++-
T Consensus 25 ~~i~i~G~--~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 25 VVLWFTGL--SGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 56788886 79999999999999998888877776666643
No 303
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=40.26 E-value=46 Score=34.11 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|-|.||++ -.|.||-.+|..++..|...|.||-.|-.|+-
T Consensus 104 ~vi~vts~-~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 104 KALAVVSA-KSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 45666654 68999999999999999999999999999864
No 304
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.17 E-value=1.2e+02 Score=26.85 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=28.3
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+..-|-+|+-.-.| .....+.+++.|++++.|+++||-.
T Consensus 45 ~~~~d~vi~iS~sG--~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 45 VTPGDVVIAISNSG--ETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34446666655344 3455789999999999999999864
No 305
>PRK06940 short chain dehydrogenase; Provisional
Probab=40.12 E-value=40 Score=34.48 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
|.++|||+ ||||+.++- .|. .|.+|...=.|
T Consensus 3 k~~lItGa--~gIG~~la~-----~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIAR-----RVG-AGKKVLLADYN 33 (275)
T ss_pred CEEEEECC--ChHHHHHHH-----HHh-CCCEEEEEeCC
Confidence 78899997 899987754 343 69999886443
No 306
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=39.63 E-value=27 Score=36.42 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=21.7
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 13 GLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 13 ~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
||||-.|+|-+..-|...|.||-.+=+||
T Consensus 11 GIGKSTts~N~aAAla~~GkkVl~vGCDP 39 (278)
T COG1348 11 GIGKSTTSQNLAAALAELGKKVLIVGCDP 39 (278)
T ss_pred CcCcchhHHHHHHHHHHcCCeEEEEcCCC
Confidence 67777777777777777777777777777
No 307
>PRK07890 short chain dehydrogenase; Provisional
Probab=39.52 E-value=36 Score=33.77 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=24.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
|.|||||| -+|||+- +...|-++|++|.+.-.+
T Consensus 6 k~vlItGa-~~~IG~~-----la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 6 KVVVVSGV-GPGLGRT-----LAVRAARAGADVVLAART 38 (258)
T ss_pred CEEEEECC-CCcHHHH-----HHHHHHHcCCEEEEEeCC
Confidence 78999998 5677764 455666889988877543
No 308
>PRK06924 short chain dehydrogenase; Provisional
Probab=39.49 E-value=45 Score=32.97 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=23.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
||.|+||||- +|||+.+ .+-|-++|++|..+
T Consensus 1 ~k~vlItGas-ggiG~~i-----a~~l~~~g~~V~~~ 31 (251)
T PRK06924 1 MRYVIITGTS-QGLGEAI-----ANQLLEKGTHVISI 31 (251)
T ss_pred CcEEEEecCC-chHHHHH-----HHHHHhcCCEEEEE
Confidence 7999999975 6777655 45566789988765
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.30 E-value=48 Score=36.66 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=33.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHH----CCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKA----CGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~----~g~~v~~~k~dpy 42 (599)
+.|++.|-. |.||=.|++.++..|+. .|.+|..+-+|+|
T Consensus 175 ~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 175 RVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred eEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 356666765 99999999999998873 5899999999988
No 310
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=39.25 E-value=79 Score=30.75 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=42.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCCCCCCccccce
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDAGTMSPFEHGE 57 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy-ln~d~gtmsp~~hge 57 (599)
||.+=|+| .|+-||=...-.|=+.|+++||+|..||-++= +.+|.--=..|.|.+
T Consensus 2 ~~Il~ivG--~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~ 57 (161)
T COG1763 2 MKILGIVG--YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRK 57 (161)
T ss_pred CcEEEEEe--cCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhc
Confidence 45566666 57888999999999999999999999998765 366665556665553
No 311
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=39.14 E-value=1.2e+02 Score=30.21 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=21.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 54 ~~vdgiIi~~~~~~----~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 54 QGVDVIILAPVVET----GWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred cCCCEEEEcCCccc----cchHHHHHHHHCCCCEEEE
Confidence 57999999764321 1123456777888997765
No 312
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.03 E-value=47 Score=37.40 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=27.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|.|-||| +=||..|++=|..+|+..|+++.+
T Consensus 122 ~~I~VTG----TnGKTTTt~ml~~iL~~~g~~~~~ 152 (498)
T PRK02006 122 KVLAITG----TNGKTTTTALTGLLCERAGKKVAV 152 (498)
T ss_pred CEEEEEC----CCcHHHHHHHHHHHHHHcCCCEEE
Confidence 4688888 469999999999999999999987
No 313
>PRK06101 short chain dehydrogenase; Provisional
Probab=39.03 E-value=34 Score=33.92 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=25.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
||-++||||- +|||+.++ +.|.++|++|...=-
T Consensus 1 ~~~vlItGas-~giG~~la-----~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITGAT-SGIGKQLA-----LDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEcCC-cHHHHHHH-----HHHHhCCCEEEEEEC
Confidence 6789999995 88887654 556678999887633
No 314
>PRK04148 hypothetical protein; Provisional
Probab=38.97 E-value=33 Score=32.44 Aligned_cols=91 Identities=26% Similarity=0.337 Sum_probs=63.1
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCcccchH
Q 007533 13 GLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNITTGK 92 (599)
Q Consensus 13 ~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~~~l~~~~n~ttgk 92 (599)
|+|-| .++...|+..|+.|+.+-+||..--++ -+.|--+|.+|--+.|+++ |+=+ + -
T Consensus 24 G~GfG---~~vA~~L~~~G~~ViaIDi~~~aV~~a-----~~~~~~~v~dDlf~p~~~~--y~~a---~----------l 80 (134)
T PRK04148 24 GIGFY---FKVAKKLKESGFDVIVIDINEKAVEKA-----KKLGLNAFVDDLFNPNLEI--YKNA---K----------L 80 (134)
T ss_pred EecCC---HHHHHHHHHCCCEEEEEECCHHHHHHH-----HHhCCeEEECcCCCCCHHH--HhcC---C----------E
Confidence 55544 455678889999999999999843223 2346778888888776642 2211 1 1
Q ss_pred hhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc
Q 007533 93 IYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI 151 (599)
Q Consensus 93 iy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtv 151 (599)
|| -+=| +-|+|.-|.++|+ .-++|++|.=+||-.
T Consensus 81 iy-----------------sirp--p~el~~~~~~la~------~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 81 IY-----------------SIRP--PRDLQPFILELAK------KINVPLIIKPLSGEE 114 (134)
T ss_pred EE-----------------EeCC--CHHHHHHHHHHHH------HcCCCEEEEcCCCCC
Confidence 22 1223 5799999999996 788999999999853
No 315
>PRK06851 hypothetical protein; Provisional
Probab=38.96 E-value=51 Score=36.23 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=33.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee--ecc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK--IDP 41 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k--~dp 41 (599)
|.+++||| +|.||-.+...|+..|..+|+.|..+. .||
T Consensus 31 ~~~il~G~--pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 31 RIFILKGG--PGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 56899998 799999999999999999999998773 455
No 316
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=38.87 E-value=57 Score=34.25 Aligned_cols=35 Identities=46% Similarity=0.589 Sum_probs=29.3
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehh
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 398 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLG 398 (599)
+.+|.|++-||-|. ++.+++++...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDGt-----lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGT-----LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHH-----HHHHHHHhccCCCCEEEEeCC
Confidence 67888888887663 677888888888999999999
No 317
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=38.83 E-value=3.3e+02 Score=30.69 Aligned_cols=142 Identities=17% Similarity=0.129 Sum_probs=72.9
Q ss_pred cccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCCC
Q 007533 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNLQ 271 (599)
Q Consensus 192 ~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l~ 271 (599)
.|--+..-.++-|-+. .|+|++|... ...-++.|-.+.|| ||+.-|- ..+|=...|--++. |.++++-
T Consensus 167 ~kGESi~DTarvLs~y---~D~IviR~~~---~~~~~e~A~~s~vP---VINAgdg-~~~HPtQaLaDl~T-i~E~~g~- 234 (429)
T PRK11891 167 AKGESIYDTSRVMSGY---VDALVIRHPE---QGSVAEFARATNLP---VINGGDG-PGEHPSQALLDLYT-IQREFSR- 234 (429)
T ss_pred CCCCCHHHHHHHHHHh---CCEEEEeCCc---hhHHHHHHHhCCCC---EEECCCC-CCCCcHHHHHHHHH-HHHHhCc-
Confidence 3433566666666555 8999999743 34566666667665 7777542 23333332211111 1122210
Q ss_pred CCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHc-CCcceeeeEEEEecCCCCCCcc-c-----
Q 007533 272 GTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDAT-E----- 344 (599)
Q Consensus 272 ~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~ha-G~~~~v~v~i~wi~s~~le~~~-~----- 344 (599)
..+..+.+||++||++. ....-.|.+.+|... |+++.+ +.++.++... .
T Consensus 235 -----------------~g~~l~G~kIa~vGD~~-~~rv~~Sl~~~la~~~G~~v~l------~~P~~~~~~~~~~~~~~ 290 (429)
T PRK11891 235 -----------------LGKIVDGAHIALVGDLK-YGRTVHSLVKLLALYRGLKFTL------VSPPTLEMPAYIVEQIS 290 (429)
T ss_pred -----------------cCCCcCCCEEEEECcCC-CChHHHHHHHHHHHhcCCEEEE------ECCCccccCHHHHHHHH
Confidence 00012358999999873 223557877777654 776644 3333332100 0
Q ss_pred --cCCchhhhHHHHhccCCCEEEeCCC
Q 007533 345 --KENPDAYKAAWKLLKGADGILVPGG 369 (599)
Q Consensus 345 --~~~p~~y~~a~~~L~~~DGIlVPGG 369 (599)
...-..++...+.++++|-|....+
T Consensus 291 ~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 291 RNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred hcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 0001113334466788887777443
No 318
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=38.67 E-value=1.4e+02 Score=29.63 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=21.3
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+... . .....++.+.+.++|+.-+
T Consensus 55 ~~vdgiii~~~~~-~---~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 55 QGVDAIIVVPVDT-A---ATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred cCCCEEEEecCch-h---hhHHHHHHHHHCCCeEEEe
Confidence 4899999976321 1 1224566677888998754
No 319
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=38.60 E-value=1.5e+02 Score=33.17 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=23.1
Q ss_pred eEEEEEeecCCC--c-ch-HHHHHHHHHHcCCcceee
Q 007533 296 VRIAMVGKYTGL--S-DA-YLSILKALLHASVDLRKK 328 (599)
Q Consensus 296 v~IaiVGkY~~l--~-Da-Y~SIi~AL~haG~~~~v~ 328 (599)
+||+|+|-|+.. . +| -.+++++|+...-.+.+.
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~ 37 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVD 37 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEE
Confidence 579999988643 2 33 448999999887666554
No 320
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=38.47 E-value=1.7e+02 Score=28.58 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.7
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+.... ...++.+.+.++|+..+
T Consensus 54 ~~vdgiii~~~~~~------~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 54 RRPAGLILTGLEHT------ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred cCCCEEEEeCCCCC------HHHHHHHHhcCCCEEEE
Confidence 57999999874322 13445566678998865
No 321
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=38.38 E-value=97 Score=32.29 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=31.3
Q ss_pred cCCCEEEeCCCCCCCc--hhHHHHHHHHHHHcCCCEEEE--ehhHHHHHHHhcccccc
Q 007533 359 KGADGILVPGGFGNRG--VQGKILAAKYAREHRIPYLGI--CLGMQVAVIEFARSVLN 412 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg--~eg~i~aik~are~~iP~LGI--CLGmQll~iefgr~Vlg 412 (599)
++.|-|..+-|||--. ....+.+=....--++|+.|+ |.|| ||.||.+.|
T Consensus 69 ~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigH----IEMGR~iTg 122 (336)
T KOG2708|consen 69 DDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGH----IEMGREITG 122 (336)
T ss_pred hhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhh----hhhcceecc
Confidence 5778999998887633 222222222223348999998 7777 566777754
No 322
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=38.15 E-value=1.4e+02 Score=33.83 Aligned_cols=83 Identities=12% Similarity=0.080 Sum_probs=45.2
Q ss_pred ceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCC---------ccccCCchhhhHHHHhccCCCEEE
Q 007533 295 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED---------ATEKENPDAYKAAWKLLKGADGIL 365 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~---------~~~~~~p~~y~~a~~~L~~~DGIl 365 (599)
..||+++| .+. +=.|..+.|...|+.+.+ .|...... +..+ ...-.|.. +.+.++|-|+
T Consensus 7 ~~kv~V~G-LG~---sG~a~a~~L~~~G~~v~v------~D~~~~~~~~~~~~~~~~~i~-~~~g~~~~-~~~~~~d~vV 74 (448)
T COG0771 7 GKKVLVLG-LGK---SGLAAARFLLKLGAEVTV------SDDRPAPEGLAAQPLLLEGIE-VELGSHDD-EDLAEFDLVV 74 (448)
T ss_pred CCEEEEEe-ccc---ccHHHHHHHHHCCCeEEE------EcCCCCccchhhhhhhccCce-eecCccch-hccccCCEEE
Confidence 46899998 553 338999999999987654 23221110 0100 00001111 3467799999
Q ss_pred eCCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 007533 366 VPGGFGNRGVQGKILAAKYAREHRIPYLG 394 (599)
Q Consensus 366 VPGGfG~rg~eg~i~aik~are~~iP~LG 394 (599)
+++|.-... ..++.|+..++|++|
T Consensus 75 ~SPGi~~~~-----p~v~~A~~~gi~i~~ 98 (448)
T COG0771 75 KSPGIPPTH-----PLVEAAKAAGIEIIG 98 (448)
T ss_pred ECCCCCCCC-----HHHHHHHHcCCcEEe
Confidence 999843221 134445555556555
No 323
>PRK05642 DNA replication initiation factor; Validated
Probab=38.11 E-value=23 Score=35.93 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=45.8
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG 64 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg 64 (599)
.+++.|. +|.||==.+.+++.-+..+|.+|..+..+=+.+-.+..+..++...+.+.||=
T Consensus 47 ~l~l~G~--~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGK--DGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDL 106 (234)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEech
Confidence 3677886 79999999999999888899999888776655543444555666678888874
No 324
>PRK05854 short chain dehydrogenase; Provisional
Probab=38.02 E-value=33 Score=35.95 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=23.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++||||- ||||+.++ +.|..+|++|.+.
T Consensus 15 k~~lITGas-~GIG~~~a-----~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTGAS-DGLGLGLA-----RRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 89998665 4466789888755
No 325
>PRK07933 thymidylate kinase; Validated
Probab=37.98 E-value=59 Score=32.56 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
+||.+-| +.|-||-..+..|...|+.+|++|..++.-
T Consensus 1 ~~IviEG--~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 1 MLIAIEG--VDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred CEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4788887 578899999999999999999999999874
No 326
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=37.81 E-value=39 Score=33.32 Aligned_cols=30 Identities=40% Similarity=0.578 Sum_probs=21.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
||-|+||||- +|||+.++ +.|-.+|++|..
T Consensus 2 ~k~ilItGas-~giG~~la-----~~l~~~g~~v~~ 31 (248)
T PRK06947 2 RKVVLITGAS-RGIGRATA-----VLAAARGWSVGI 31 (248)
T ss_pred CcEEEEeCCC-CcHHHHHH-----HHHHHCCCEEEE
Confidence 5789999985 88887644 456667877643
No 327
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=37.70 E-value=48 Score=33.65 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=31.7
Q ss_pred CEEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 1 MKYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 1 ~k~i~vtgg----------v~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
|| |+||+| .+|.-.-|-+.++|...|..+|++|+.+-
T Consensus 1 ~~-vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 1 MK-ILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred CE-EEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 44 678888 68888999999999999999999999873
No 328
>PRK05439 pantothenate kinase; Provisional
Probab=37.13 E-value=54 Score=35.18 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=35.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeecccccCC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPYLNTD 46 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~--g~~v~~~k~dpyln~d 46 (599)
.|.|+|+ +|-||=.+|..|-.+|+.. |.+|..+-+|-|+.-+
T Consensus 88 iIgIaG~--~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~ 131 (311)
T PRK05439 88 IIGIAGS--VAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN 131 (311)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH
Confidence 5789998 4778999999999999874 7899999999998643
No 329
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=36.92 E-value=4.4e+02 Score=28.58 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=58.4
Q ss_pred ccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCC
Q 007533 191 EQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNL 270 (599)
Q Consensus 191 e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l 270 (599)
-.|--....+++-| +=..|+|++|.. ....-+.+|-.+.+| ||+.-| ..+|=...|--++. |.++++
T Consensus 85 ~~kgEsl~Dt~rvl---s~y~D~iviR~~---~~~~~~~~a~~~~vP---VINa~~--~~~HPtQaLaDl~T-i~e~~g- 151 (331)
T PRK02102 85 LGKKESIEDTARVL---GRMYDGIEYRGF---KQEIVEELAKYSGVP---VWNGLT--DEWHPTQMLADFMT-MKEHFG- 151 (331)
T ss_pred CCCCcCHHHHHHHH---hhcCCEEEEECC---chHHHHHHHHhCCCC---EEECCC--CCCChHHHHHHHHH-HHHHhC-
Confidence 33433444444444 444899999975 455666777777776 888866 34554433311110 111111
Q ss_pred CCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCccee
Q 007533 271 QGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 327 (599)
Q Consensus 271 ~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v 327 (599)
.-+.+||++||+-. ...-.|.+.++...|+.+.+
T Consensus 152 ---------------------~l~g~~va~vGd~~--~~v~~Sl~~~~~~~g~~v~~ 185 (331)
T PRK02102 152 ---------------------PLKGLKLAYVGDGR--NNMANSLMVGGAKLGMDVRI 185 (331)
T ss_pred ---------------------CCCCCEEEEECCCc--ccHHHHHHHHHHHcCCEEEE
Confidence 12357999999631 12567888888888876654
No 330
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=36.58 E-value=1.4e+02 Score=31.16 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=50.2
Q ss_pred EeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 007533 301 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 380 (599)
Q Consensus 301 VGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~ 380 (599)
.|||. +..-+.++|+.+|+++ +.|-++-++..+-. ....|+.+..-+--++|+=.|-+..+..+.
T Consensus 16 tgky~----s~~~~~~ai~aSg~~i-vTva~rR~~~~~~~----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~ 80 (248)
T cd04728 16 TGKYP----SPAIMKEAIEASGAEI-VTVALRRVNIGDPG----------GESFLDLLDKSGYTLLPNTAGCRTAEEAVR 80 (248)
T ss_pred cCCCC----CHHHHHHHHHHhCCCE-EEEEEEecccCCCC----------cchHHhhccccCCEECCCCCCCCCHHHHHH
Confidence 36776 5677889999999998 44667666642211 123566666555678899888887777777
Q ss_pred HHHHHHH
Q 007533 381 AAKYARE 387 (599)
Q Consensus 381 aik~are 387 (599)
.++-|||
T Consensus 81 ~a~lare 87 (248)
T cd04728 81 TARLARE 87 (248)
T ss_pred HHHHHHH
Confidence 7777776
No 331
>PRK13973 thymidylate kinase; Provisional
Probab=36.57 E-value=68 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
+||++-| +.|-||...+..|-.-|+++|++|....
T Consensus 4 ~~IviEG--~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEG--GEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7999988 5899999999999999999999986554
No 332
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.43 E-value=33 Score=34.47 Aligned_cols=29 Identities=45% Similarity=0.786 Sum_probs=22.2
Q ss_pred ccCCcchHHHHHHHHHHHHHC--CCeeEEee
Q 007533 10 VVSGLGKGVTASSIGVLLKAC--GLRVTCIK 38 (599)
Q Consensus 10 v~s~~gkgi~~~s~g~ll~~~--g~~v~~~k 38 (599)
|..|=|||-+.|.+|+.|++. |++|-++.
T Consensus 33 V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 33 VFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred EEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 456779999999999999985 56665543
No 333
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=36.24 E-value=52 Score=34.55 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=29.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
+|+|.|.==-|.||=.+|.-++.-|...|+||-++-+|-|
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3555555556889999999999999999999999999986
No 334
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=36.16 E-value=1.9e+02 Score=28.05 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=40.4
Q ss_pred EEEEEeecCCCcc-hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh--ccCCCEEEeCCCCCCC
Q 007533 297 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFGNR 373 (599)
Q Consensus 297 ~IaiVGkY~~l~D-aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIlVPGGfG~r 373 (599)
+|+++= ....+ .|..+.++++.+..+...++. +.+... +++....+.+. -.++|||++.+...
T Consensus 1 ~ig~i~--p~~~~~~~~~~~~~~~~~a~~~g~~~~--~~~~~~--------~~~~~~~~~~~l~~~~vdgvi~~~~~~-- 66 (267)
T cd01536 1 KIGLVV--PSLNNPFWQAMNKGAEAAAKELGVELI--VLDAQN--------DVSKQIQQIEDLIAQGVDGIIISPVDS-- 66 (267)
T ss_pred CEEEEe--ccccCHHHHHHHHHHHHHHHhcCceEE--EECCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCCc--
Confidence 356662 22223 345577776666555444333 333321 11111222222 24899999876321
Q ss_pred chhHHHHHHHHHHHcCCCEEEE
Q 007533 374 GVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 374 g~eg~i~aik~are~~iP~LGI 395 (599)
...-..++++++.++|+..+
T Consensus 67 --~~~~~~~~~l~~~~ip~V~~ 86 (267)
T cd01536 67 --AALTPALKKANAAGIPVVTV 86 (267)
T ss_pred --hhHHHHHHHHHHCCCcEEEe
Confidence 11112456666777887654
No 335
>PLN02564 6-phosphofructokinase
Probab=35.99 E-value=1.2e+02 Score=34.56 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=40.4
Q ss_pred hhhHHHHhcc--CCCEEEeCCCCCCCchhHHHHHHHHHHHcCCC--EEEE-------------ehhHHHHHHHhcccc
Q 007533 350 AYKAAWKLLK--GADGILVPGGFGNRGVQGKILAAKYAREHRIP--YLGI-------------CLGMQVAVIEFARSV 410 (599)
Q Consensus 350 ~y~~a~~~L~--~~DGIlVPGGfG~rg~eg~i~aik~are~~iP--~LGI-------------CLGmQll~iefgr~V 410 (599)
.+.++.+.|+ +.|++++=||.|+ ..+...+.+++++.+.| +.|| |+||+-++-.....+
T Consensus 164 ~~~~iv~~L~~~~Id~LivIGGDGS--~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI 239 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYIIGGDGT--QKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAI 239 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEECCchH--HHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHH
Confidence 4555556554 8999999998875 33444556666666655 7776 999999865554433
No 336
>PRK05993 short chain dehydrogenase; Provisional
Probab=35.82 E-value=39 Score=34.42 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=25.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
+|.|+|||| -+|||+.+ .+.|..+|++|...--+
T Consensus 4 ~k~vlItGa-sggiG~~l-----a~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGC-SSGIGAYC-----ARALQSDGWRVFATCRK 37 (277)
T ss_pred CCEEEEeCC-CcHHHHHH-----HHHHHHCCCEEEEEECC
Confidence 378999998 58888654 56677889998876443
No 337
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=35.71 E-value=1.8e+02 Score=28.46 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=22.1
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 396 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGIC 396 (599)
.++|||++.++... . ...++.++++++|++-+.
T Consensus 54 ~~vdgiii~~~~~~--~---~~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 54 QRVDGLILTVADAA--T---SPALDLLDAERVPYVLAY 86 (266)
T ss_pred cCCCEEEEecCCCC--c---hHHHHHHhhCCCCEEEEe
Confidence 47999999664321 1 125677788899986663
No 338
>PRK12742 oxidoreductase; Provisional
Probab=35.67 E-value=45 Score=32.58 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=22.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|.|+|||| -+|||+-++ +.|.++|.+|..
T Consensus 7 k~vlItGa-sggIG~~~a-----~~l~~~G~~v~~ 35 (237)
T PRK12742 7 KKVLVLGG-SRGIGAAIV-----RRFVTDGANVRF 35 (237)
T ss_pred CEEEEECC-CChHHHHHH-----HHHHHCCCEEEE
Confidence 78999988 678887654 667788888764
No 339
>PRK06398 aldose dehydrogenase; Validated
Probab=35.63 E-value=40 Score=33.93 Aligned_cols=30 Identities=43% Similarity=0.589 Sum_probs=23.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++|||| -+|||+-++ +.|..+|++|...
T Consensus 7 k~vlItGa-s~gIG~~ia-----~~l~~~G~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGG-SQGIGKAVV-----NRLKEEGSNVINF 36 (258)
T ss_pred CEEEEECC-CchHHHHHH-----HHHHHCCCeEEEE
Confidence 78999998 478887654 6777899998865
No 340
>PRK09701 D-allose transporter subunit; Provisional
Probab=35.61 E-value=1.9e+02 Score=29.90 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=42.4
Q ss_pred eEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh--ccCCCEEEeCCCCCC
Q 007533 296 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFGN 372 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIlVPGGfG~ 372 (599)
-+|+++-. .+.+.|. ++.+.++.+.-.....+.+...++++ +++...+..+. -.++||||+.+...+
T Consensus 25 ~~Igvi~~--~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~--------~~~~~~~~i~~l~~~~vDgiIi~~~~~~ 94 (311)
T PRK09701 25 AEYAVVLK--TLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG--------DFQSQLQLFEDLSNKNYKGIAFAPLSSV 94 (311)
T ss_pred CeEEEEeC--CCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCChH
Confidence 47998853 3445544 57766666544443332221112111 11111111122 247999999874321
Q ss_pred CchhHHHHHHHHHHHcCCCEEEE
Q 007533 373 RGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 373 rg~eg~i~aik~are~~iP~LGI 395 (599)
. ....+..+.++++|+.-+
T Consensus 95 -~---~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 95 -N---LVMPVARAWKKGIYLVNL 113 (311)
T ss_pred -H---HHHHHHHHHHCCCcEEEe
Confidence 1 123355667788997654
No 341
>PRK08303 short chain dehydrogenase; Provisional
Probab=35.56 E-value=38 Score=35.52 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++||||- ||||+.++ +.|...|++|.+.
T Consensus 9 k~~lITGgs-~GIG~aia-----~~la~~G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAGAT-RGAGRGIA-----VELGAAGATVYVT 38 (305)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEE
Confidence 789999986 88887655 5566789998765
No 342
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=35.36 E-value=59 Score=31.51 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=31.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
|.++|+ ||-||=.+|..|-.+| .+.+|..+-.|.|..
T Consensus 2 igi~G~--~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 2 IGIAGG--SGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 778998 8999999999998888 566888888887753
No 343
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.08 E-value=2.5e+02 Score=31.13 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=105.8
Q ss_pred HhhHHHHhhhhcCCCCCCeeEEcccchHHH-HHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHHHHHHhhhHc
Q 007533 92 KIYQSVIDKERKGDYLGKTVQVVPHITDEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRV 170 (599)
Q Consensus 92 kiy~~vi~ker~g~ylg~tvqviphit~~i-~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ea~rq~~~~~ 170 (599)
|+.+.+.+--++ |-.+.+-|++--+.|+ -+=|+.+++- . ...+.+|+.+...|-.|+-. .=|-.|++++-..+
T Consensus 73 kL~~~I~~~~~~--~~p~~I~V~ttC~~~~IGdDi~~v~~~-~--~~~~~~vi~v~t~gf~g~~~-~G~~~a~~al~~~~ 146 (427)
T cd01971 73 RLRELIKSTLSI--IDADLFVVLTGCIAEIIGDDVGAVVSE-F--QEGGAPIVYLETGGFKGNNY-AGHEIVLKAIIDQY 146 (427)
T ss_pred HHHHHHHHHHHh--CCCCEEEEEcCCcHHHhhcCHHHHHHH-h--hhcCCCEEEEECCCcCcccc-cHHHHHHHHHHHHh
Confidence 666666654433 6688999988766554 3333333321 0 12357899999999999754 45544555443221
Q ss_pred ------CCCCEEEEeeeeeeeecC--CCccccCCchhhhhhhhcCCCcccEEEEecCC--CCChhhhhccccCCCCCCC-
Q 007533 171 ------GPGNFCLIHVSLVPVLNV--VGEQKTKPTQHSVRGLRGQGLTPNILACRSTV--ALDDNVKGKLSQFCHVPEQ- 239 (599)
Q Consensus 171 ------g~~n~~~ihv~~vp~~~~--~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~--~l~~~~~~Kislfc~v~~~- 239 (599)
...+...| +...|.+.. .|+ ...--+-|+.+|+.+..++..+.. .+.+--+++..+-.. ++
T Consensus 147 ~~~~~~~~~~~VNi-iG~~~~~~~~~~~d-----~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~~A~~niv~~--~~~ 218 (427)
T cd01971 147 VGQSEEKEPGLVNL-WGPVPYQDPFWRGD-----LEEIKRVLEGIGLKVNILFGPESNGEELRSIPKAQFNLVLS--PWV 218 (427)
T ss_pred ccCCCCCCCCeEEE-EeccCCcccccccc-----HHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEEc--Hhh
Confidence 12233332 111122211 011 122335678899999988764322 222222222211110 00
Q ss_pred Cee------eeCCCCCccc--hhHHHH---HHHHHHHHHcCCCCCCC-chhhHHHHH--------HHhhhcCCCCceEEE
Q 007533 240 NII------TLYDVPNIWH--IPLLLR---KAHEAIFKVLNLQGTTK-EPLLKEWTS--------RAEICDGLHEPVRIA 299 (599)
Q Consensus 240 ~Vi------~~~dv~tiy~--vPl~L~---g~~~~i~~~l~l~~~~~-~~~l~~W~~--------l~~~~~~~~~~v~Ia 299 (599)
..- .-.+++-++. +|.-++ ...+.|.+.++++. .. ++.+.+++. +.+.+.......|++
T Consensus 219 g~~~a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~~-~~~~~~i~~e~~~~~~~l~~~~d~l~~~~~~k~va 297 (427)
T cd01971 219 GLEFAQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIEK-AKVEAFIKAEEKRYYHYLERFSDFMARWGLPRRFA 297 (427)
T ss_pred HHHHHHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 000 0112222221 344444 35556677777752 11 122233332 222222122346889
Q ss_pred EEeecCCCcchHHHHHHHHH-HcCCccee
Q 007533 300 MVGKYTGLSDAYLSILKALL-HASVDLRK 327 (599)
Q Consensus 300 iVGkY~~l~DaY~SIi~AL~-haG~~~~v 327 (599)
|+|+.. -=.++.+.|. ..|+.+..
T Consensus 298 i~~~~~----~~~~l~~~L~~elGm~~~~ 322 (427)
T cd01971 298 VIADST----YALGLARFLVNELGWVPAK 322 (427)
T ss_pred EECChH----HHHHHHHHHHHhcCCceEE
Confidence 987543 3358899995 89998754
No 344
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=34.97 E-value=67 Score=30.80 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=29.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
+.|.++|. ||-||..+|..|...|+..|..+..+--|
T Consensus 19 ~~i~i~G~--~GsGKstla~~l~~~l~~~~~~~~~l~~d 55 (184)
T TIGR00455 19 VVIWLTGL--SGSGKSTIANALEKKLESKGYRVYVLDGD 55 (184)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEECCh
Confidence 56788884 69999999999999999888766544333
No 345
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.90 E-value=1.6e+02 Score=29.79 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=22.3
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+...+. ....++.++++++|+..+
T Consensus 54 ~~vdgiii~~~~~~~----~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 54 KGVDVLVIAPVDGEA----LASAVEKAADAGIPVIAY 86 (288)
T ss_pred cCCCEEEEecCChhh----HHHHHHHHHHCCCCEEEE
Confidence 589999997633221 234566777889998755
No 346
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=34.61 E-value=1e+02 Score=29.42 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 13 GLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 13 ~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
+=||..|++=|..+|+..|..|..+-
T Consensus 4 T~GKTTTt~ml~~iL~~~g~~~~~~~ 29 (188)
T PF08245_consen 4 TNGKTTTTRMLAHILSAAGKVVGTIG 29 (188)
T ss_dssp SSSHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CCCHHHHHHHHHHHHHhcCCcccccc
Confidence 45999999999999999999888876
No 347
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=34.60 E-value=24 Score=38.31 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=35.8
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc--CCCCCCCc
Q 007533 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN--TDAGTMSP 52 (599)
Q Consensus 10 v~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln--~d~gtmsp 52 (599)
+|.|.|-|=|.+++|+-||.++..+.++=.||+-. .|++.-+|
T Consensus 216 ~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~ 260 (362)
T KOG1252|consen 216 FVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP 260 (362)
T ss_pred EEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC
Confidence 45678888888899999999999999999999854 46666666
No 348
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=34.49 E-value=50 Score=32.69 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=21.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v 34 (599)
|+-|.+|||.-| || |+++.+|++.|+.|
T Consensus 1 m~~igitG~igs--GK----st~~~~l~~~g~~v 28 (200)
T PRK14734 1 MLRIGLTGGIGS--GK----STVADLLSSEGFLI 28 (200)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 788999999655 67 57778888888864
No 349
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.28 E-value=37 Score=35.71 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=29.6
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
..++|-+++-||-|+ ++.+++.+...++|+|||=+|.
T Consensus 40 ~~~~d~vi~iGGDGT-----~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 40 GQRAQLAIVIGGDGN-----MLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred CcCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 347899999998663 6677777777789999998874
No 350
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.26 E-value=1.9e+02 Score=29.71 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=22.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+.. . .....+++.+++.++|+.-+
T Consensus 56 ~~vdgiii~~~~--~--~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 56 KGVDLLAVNLVD--P--TAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred cCCCEEEEecCc--h--hhHHHHHHHHHHCCCCEEEe
Confidence 589999996532 1 12235667778889997654
No 351
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=34.08 E-value=48 Score=33.61 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=30.3
Q ss_pred ccCCCEEEeCCCCCC-Cch-hHHHHHHHHHHHcCCCEEEEeh
Q 007533 358 LKGADGILVPGGFGN-RGV-QGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 358 L~~~DGIlVPGGfG~-rg~-eg~i~aik~are~~iP~LGICL 397 (599)
+.+.|.|.++=|||+ .|+ -|+.-+--.|...++|++|||-
T Consensus 56 ~~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 56 LQDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HHHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 357899999999998 354 3444444567778999999994
No 352
>PRK00208 thiG thiazole synthase; Reviewed
Probab=34.08 E-value=1.7e+02 Score=30.71 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=51.0
Q ss_pred EeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 007533 301 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 380 (599)
Q Consensus 301 VGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~ 380 (599)
.|||. ++.-+.++|+.+|+++ +.|-++-++..+- ....|+.+..-.--++|+=.|-+..+..+.
T Consensus 17 tgky~----s~~~~~~ai~asg~~i-vTvalrR~~~~~~-----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~ 80 (250)
T PRK00208 17 TGKYP----SPQVMQEAIEASGAEI-VTVALRRVNLGQG-----------GDNLLDLLPPLGVTLLPNTAGCRTAEEAVR 80 (250)
T ss_pred cCCCC----CHHHHHHHHHHhCCCe-EEEEEEeecCCCC-----------cchHHhhccccCCEECCCCCCCCCHHHHHH
Confidence 36787 6678899999999998 4467777665321 123566676555678899888888888888
Q ss_pred HHHHHHH
Q 007533 381 AAKYARE 387 (599)
Q Consensus 381 aik~are 387 (599)
.++-|||
T Consensus 81 ~a~lare 87 (250)
T PRK00208 81 TARLARE 87 (250)
T ss_pred HHHHHHH
Confidence 8887777
No 353
>PLN02422 dephospho-CoA kinase
Probab=34.04 E-value=50 Score=33.91 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=50.2
Q ss_pred EcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCcc
Q 007533 113 VVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQ 192 (599)
Q Consensus 113 viphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ 192 (599)
+=|+|..+++.++.+... .+..++++|+ |-+ ++.|.++.| ..|-++.+
T Consensus 87 lHP~V~~~~~~~~~~~~~-------~~~~~vv~ei----------pLL-------~E~~~~~~~----D~vI~V~a---- 134 (232)
T PLN02422 87 LAPYISSGIFWEILKLWL-------KGCKVIVLDI----------PLL-------FETKMDKWT----KPVVVVWV---- 134 (232)
T ss_pred hhHHHHHHHHHHHHHHHh-------cCCCEEEEEe----------hhh-------hhcchhhhC----CEEEEEEC----
Confidence 458999999988876532 1235888886 422 333433322 33444433
Q ss_pred ccCCchhhhhhhhcC-CCcccEEEEecCCCCChhhhhcc
Q 007533 193 KTKPTQHSVRGLRGQ-GLTPNILACRSTVALDDNVKGKL 230 (599)
Q Consensus 193 ktkptq~sv~~Lrs~-Gi~pd~iv~R~~~~l~~~~~~Ki 230 (599)
|..-.++.|.+. |++.+-+.-|-...++.+.+.+.
T Consensus 135 ---~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~eek~~~ 170 (232)
T PLN02422 135 ---DPETQLERLMARDGLSEEQARNRINAQMPLDWKRSK 170 (232)
T ss_pred ---CHHHHHHHHHHcCCCCHHHHHHHHHHcCChhHHHhh
Confidence 555666777664 78888777777777766655333
No 354
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=33.92 E-value=2.1e+02 Score=28.03 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=36.4
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~ 67 (599)
|.++| ..|-||=.....+-..+. .+.+|..++-|++.++|+-.+.... -+|..+.+|..+
T Consensus 25 i~~~G--~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~~-~~~~~l~~gcic 84 (207)
T TIGR00073 25 LNFMS--SPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKYG-APAIQINTGKEC 84 (207)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHcC-CcEEEEcCCCcc
Confidence 44444 345566444455444333 4589999999998888877665322 256666666544
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=33.82 E-value=74 Score=31.17 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
..|.++| .||-||=.++..|..+| .+.+|..+-.|.|.
T Consensus 7 ~iI~I~G--~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 7 IIIGIAG--GSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 3678888 68999999999999988 45577888888775
No 356
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=33.81 E-value=55 Score=28.85 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.8
Q ss_pred cCCcchHHHHHHHHHHHHHC-CCeeEEeeeccccc
Q 007533 11 VSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPYLN 44 (599)
Q Consensus 11 ~s~~gkgi~~~s~g~ll~~~-g~~v~~~k~dpyln 44 (599)
=.|.||=.++..++..|.+. |.+|-.+-+||...
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~ 42 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG 42 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC
Confidence 36899999999999999998 99999999999843
No 357
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=33.65 E-value=44 Score=33.51 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++|||| -+|||+.++ ..|-.+|++|...
T Consensus 9 k~~lItGa-s~gIG~aia-----~~l~~~G~~vv~~ 38 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMA-----IGLAKAGADIVGV 38 (251)
T ss_pred CEEEEeCC-CchHHHHHH-----HHHHHCCCEEEEe
Confidence 78999998 478887654 5566789988753
No 358
>PLN02342 ornithine carbamoyltransferase
Probab=33.49 E-value=4.2e+02 Score=29.00 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=72.4
Q ss_pred ccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCCCC
Q 007533 193 KTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNLQG 272 (599)
Q Consensus 193 ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l~~ 272 (599)
|--..+-.++-|... .|+|++|.. ....-..++-.+.+| ||+.-| ..+|=...|--+.. |.++++
T Consensus 126 kGESl~DTarvLs~y---~D~IviR~~---~~~~~~~la~~~~vP---VINA~~--~~~HPtQaLaDl~T-i~e~~G--- 190 (348)
T PLN02342 126 KREETRDIARVLSRY---NDIIMARVF---AHQDVLDLAEYSSVP---VINGLT--DYNHPCQIMADALT-IIEHIG--- 190 (348)
T ss_pred CCcCHHHHHHHHHHh---CCEEEEeCC---ChHHHHHHHHhCCCC---EEECCC--CCCChHHHHHHHHH-HHHHhC---
Confidence 433566666666555 799999975 344456666666664 777743 34544333311110 111111
Q ss_pred CCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCcc-----c---
Q 007533 273 TTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-----E--- 344 (599)
Q Consensus 273 ~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~-----~--- 344 (599)
.-+.+||++||+- ...-.|.+.++...|+++.+ +.++.++... .
T Consensus 191 -------------------~l~glkva~vGD~---~nva~Sli~~~~~~G~~v~~------~~P~~~~~~~~~~~~a~~~ 242 (348)
T PLN02342 191 -------------------RLEGTKVVYVGDG---NNIVHSWLLLAAVLPFHFVC------ACPKGYEPDAKTVEKARAA 242 (348)
T ss_pred -------------------CcCCCEEEEECCC---chhHHHHHHHHHHcCCEEEE------ECCcccccCHHHHHHHHHh
Confidence 1235899999973 23567888899888887654 3333332210 0
Q ss_pred c-CCchhhhHHHHhccCCCEEEeC
Q 007533 345 K-ENPDAYKAAWKLLKGADGILVP 367 (599)
Q Consensus 345 ~-~~p~~y~~a~~~L~~~DGIlVP 367 (599)
. ..-..++...+.++++|-|...
T Consensus 243 g~~~~~~~~d~~eav~~aDVvy~~ 266 (348)
T PLN02342 243 GISKIEITNDPAEAVKGADVVYTD 266 (348)
T ss_pred CCCcEEEEcCHHHHhCCCCEEEEC
Confidence 0 0111233445668888877765
No 359
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.26 E-value=1.4e+02 Score=31.46 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=23.8
Q ss_pred CCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEehhH
Q 007533 360 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 399 (599)
Q Consensus 360 ~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICLGm 399 (599)
++|.+++-||-|+ ++.+++ ....|+|||=+|.
T Consensus 52 ~~D~vi~lGGDGT-----~L~a~~---~~~~PilGIN~G~ 83 (271)
T PRK01185 52 NADVIITIGGDGT-----ILRTLQ---RAKGPILGINMGG 83 (271)
T ss_pred CCCEEEEEcCcHH-----HHHHHH---HcCCCEEEEECCC
Confidence 7899999998774 344444 3457999998874
No 360
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=33.15 E-value=42 Score=41.20 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=64.2
Q ss_pred CCCeeEEcccc-------------------hHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccccchHHHHHHHhh
Q 007533 107 LGKTVQVVPHI-------------------TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFS 167 (599)
Q Consensus 107 lg~tvqviphi-------------------t~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ea~rq~~ 167 (599)
||||.|||-.. -|-+.+|.....+--++ ....-++=|-|| |||-++|---| ++...+
T Consensus 707 LGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekWm~~-~e~~~~leV~eL-~~vkr~e~R~~--~L~~W~ 782 (1567)
T KOG1015|consen 707 LGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKWMEG-LEDDEKLEVSEL-ATVKRPEERSY--MLQRWQ 782 (1567)
T ss_pred ccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHhccc-ccccccceeehh-hhccChHHHHH--HHHHHH
Confidence 89999998642 36677887776643232 112224556677 69999886553 344444
Q ss_pred hHcCCCCEEEEeeeeeeeecCCCccccCC-chhhhhhhhcCCCcccEEEEecCCCC
Q 007533 168 YRVGPGNFCLIHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVAL 222 (599)
Q Consensus 168 ~~~g~~n~~~ihv~~vp~~~~~~e~ktkp-tq~sv~~Lrs~Gi~pd~iv~R~~~~l 222 (599)
.+ .-+|.|--++.-.|...--.|.+- --.-.+.| ...-||++||-.-.-|
T Consensus 783 ~~---ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~l--vdpGPD~vVCDE~HiL 833 (1567)
T KOG1015|consen 783 ED---GGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKAL--VDPGPDFVVCDEGHIL 833 (1567)
T ss_pred hc---CCEEEEehHHHHHHhcccchhhhHHHHHHHHhc--cCCCCCeEEecchhhh
Confidence 44 358888877776665433333322 22233444 3455999999876544
No 361
>PRK07035 short chain dehydrogenase; Provisional
Probab=33.13 E-value=47 Score=32.90 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|-++||||- |||| +++.+.|..+|++|..+
T Consensus 9 k~vlItGas-~gIG-----~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVTGAS-RGIG-----EAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEECCC-cHHH-----HHHHHHHHHCCCEEEEE
Confidence 679999886 6776 46667777889988765
No 362
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=33.05 E-value=2.3e+02 Score=27.30 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=22.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCC
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIP 391 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP 391 (599)
.++|-||.+||-|-...+-..++++...+..+|
T Consensus 62 ~~~DlVIttGGtg~g~~D~t~eal~~l~~~~l~ 94 (163)
T TIGR02667 62 PDVQVILITGGTGFTGRDVTPEALEPLFDKTVE 94 (163)
T ss_pred CCCCEEEECCCcCCCCCCCcHHHHHHHHCCcCC
Confidence 579999999986554444455666666665555
No 363
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=33.04 E-value=1.8e+02 Score=30.72 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=52.0
Q ss_pred EeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 007533 301 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 380 (599)
Q Consensus 301 VGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~ 380 (599)
.|||. ++.-+.++|+.+|+++ +.|-++-++......+ ...|+.+..-.--++|+=.|-+..+..+.
T Consensus 23 Tgky~----s~~~~~~ai~aSg~ev-vTvalRR~~~~~~~~~---------~~~l~~i~~~~~~~LPNTaGc~tA~EAv~ 88 (267)
T CHL00162 23 TGKYK----SLKDAIQSIEASGCEI-VTVAIRRLNNNLLNDN---------SNLLNGLDWNKLWLLPNTAGCQTAEEAIR 88 (267)
T ss_pred cCCCC----CHHHHHHHHHHhCCcE-EEEEEEEeccCcCCCc---------chHHHhhchhccEECCcCcCCCCHHHHHH
Confidence 36776 6678899999999998 4466777664211110 12567776556678999888888888888
Q ss_pred HHHHHHH
Q 007533 381 AAKYARE 387 (599)
Q Consensus 381 aik~are 387 (599)
.++.|||
T Consensus 89 ~A~laRe 95 (267)
T CHL00162 89 MAFLGRE 95 (267)
T ss_pred HHHHHHH
Confidence 8888887
No 364
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.84 E-value=1.6e+02 Score=29.57 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=47.5
Q ss_pred EEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchh
Q 007533 297 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 376 (599)
Q Consensus 297 ~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~e 376 (599)
+|.+||- -..+...|.++-+..|+... .=+|+.-. |+.-.. +....+|.|+|.+ ..
T Consensus 63 ~ILfVgt---k~~~~~~V~~~A~~~g~~~v---~~RWlgGt-LTN~~~-----------~~~~~Pdlliv~d------p~ 118 (196)
T TIGR01012 63 DILVVSA---RIYGQKPVLKFAKVTGARAI---AGRFTPGT-FTNPMQ-----------KAFREPEVVVVTD------PR 118 (196)
T ss_pred eEEEEec---CHHHHHHHHHHHHHhCCceE---CCeeCCCC-CCCccc-----------cccCCCCEEEEEC------Cc
Confidence 6999972 22244456666666666542 33687643 322110 1246788888864 12
Q ss_pred HHHHHHHHHHHcCCCEEEEe
Q 007533 377 GKILAAKYAREHRIPYLGIC 396 (599)
Q Consensus 377 g~i~aik~are~~iP~LGIC 396 (599)
....|+++|..-+||+.|||
T Consensus 119 ~~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 119 ADHQALKEASEVGIPIVALC 138 (196)
T ss_pred cccHHHHHHHHcCCCEEEEe
Confidence 24578999999999999998
No 365
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.77 E-value=54 Score=32.71 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=25.0
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 2 k~i~vtggv-~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
|-|+||||. .||||+. +.+.|..+|++|.+.=
T Consensus 6 k~vlItGas~~~giG~~-----la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 6 KIALVTGASRLNGIGAA-----VCRRLAAKGIDIFFTY 38 (256)
T ss_pred cEEEEeCCCCCCCHHHH-----HHHHHHHcCCcEEEEc
Confidence 689999998 5899986 4566677899887763
No 366
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=32.64 E-value=72 Score=33.64 Aligned_cols=93 Identities=28% Similarity=0.361 Sum_probs=64.5
Q ss_pred CCccccCCCCccccccCCCCCCCCcccchHh--hHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhccc-C----CC
Q 007533 63 DGGEVDLDLGNYERFMDIKLTRDNNITTGKI--YQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIP-V----DG 135 (599)
Q Consensus 63 dg~e~dldlg~yerfl~~~l~~~~n~ttgki--y~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~~~~p-~----d~ 135 (599)
-|.+++| |.--|.|=|.-+|+|..+++|+. -.+.-..+|+|+ +.++++|.++.+- | + ++
T Consensus 50 ~gv~V~l-l~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE------------~~~~~~~~~~lgi-~i~~~~~~~ 115 (267)
T COG1834 50 NGVEVHL-LPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGE------------EEAIKETLESLGI-PIYPRVEAG 115 (267)
T ss_pred CCCEEEE-cCcccCCCcceEeccceeEecccEEEeccCChhhccC------------HHHHHHHHHHcCC-cccccccCC
Confidence 3444444 44667888999999999999864 355567899998 7899999999873 4 2 22
Q ss_pred CCCC-CcEEEEeeCccc--cccccchHHHHHHHhhhHcC
Q 007533 136 KEGP-VDVCVIELGGTI--GDIESMPFIEALGQFSYRVG 171 (599)
Q Consensus 136 ~~~~-~dv~i~e~ggtv--gdies~pf~ea~rq~~~~~g 171 (599)
..++ =|+++.+ |.|| |+= .--=+|+++||+.-++
T Consensus 116 ~~eG~GD~l~~~-~~~v~iG~s-~RTn~egi~~l~~~L~ 152 (267)
T COG1834 116 VFEGAGDVLMDG-GDTVYIGYS-FRTNLEGIEQLQAWLE 152 (267)
T ss_pred CccccccEEEeC-CcEEEEEec-cccchHHHHHHHHHhc
Confidence 2233 5888887 7776 221 1223588899998887
No 367
>PRK09072 short chain dehydrogenase; Provisional
Probab=32.63 E-value=49 Score=33.14 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=24.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
|.|+||||. +|||+.+ .+.|.++|++|..+-.+
T Consensus 6 ~~vlItG~s-~~iG~~i-----a~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGAS-GGIGQAL-----AEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHCCCEEEEEECC
Confidence 579999987 8888654 45667789998876544
No 368
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=32.59 E-value=5.4e+02 Score=27.98 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=60.6
Q ss_pred ccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCC
Q 007533 191 EQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNL 270 (599)
Q Consensus 191 e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l 270 (599)
-.|--+...+++-|.+. .|+|++|.. ....-..+|-.+.+| ||+.-+ ..+|=...|--+.. |.++++-
T Consensus 84 ~~kgEsl~Dtarvls~y---~D~iviR~~---~~~~~~~~a~~~~vP---VINa~~--~~~HPtQaLaDl~T-i~e~~g~ 151 (334)
T PRK12562 84 IGHKESIKDTARVLGRM---YDGIQYRGH---GQEVVETLAEYAGVP---VWNGLT--NEFHPTQLLADLLT-MQEHLPG 151 (334)
T ss_pred CCCCcCHHHHHHHHHHh---CCEEEEECC---chHHHHHHHHhCCCC---EEECCC--CCCChHHHHHHHHH-HHHHhCC
Confidence 33444566666666555 899999975 345677777777775 787743 44554433311110 1121110
Q ss_pred CCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCccee
Q 007533 271 QGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 327 (599)
Q Consensus 271 ~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v 327 (599)
..-+.++|++||+-. . ..-.|.+.++...|+.+.+
T Consensus 152 --------------------~~l~gl~va~vGD~~-~-~v~~S~~~~~~~~G~~v~~ 186 (334)
T PRK12562 152 --------------------KAFNEMTLVYAGDAR-N-NMGNSMLEAAALTGLDLRL 186 (334)
T ss_pred --------------------CCcCCcEEEEECCCC-C-CHHHHHHHHHHHcCCEEEE
Confidence 011357999999632 1 2567888888888877654
No 369
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=32.35 E-value=88 Score=32.85 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=54.0
Q ss_pred HHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCc-----hhHHHHHHHHHHHc
Q 007533 314 ILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-----VQGKILAAKYAREH 388 (599)
Q Consensus 314 Ii~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg-----~eg~i~aik~are~ 388 (599)
+++..+..|++....+++.|-+-.+.. .+...+.+++||++.||--.|- .....++++.-..+
T Consensus 72 y~rife~~gv~~v~ildir~R~~a~~s------------~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~ 139 (293)
T COG4242 72 YIRIFEMMGVEEVQILDIRNREDASSS------------DIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRR 139 (293)
T ss_pred hhhHHHHhccceeEEEeeecccccchH------------HHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhc
Confidence 344667788877666677775433321 1335689999999999855442 23466777776677
Q ss_pred CCCEEEEehhHHHHH
Q 007533 389 RIPYLGICLGMQVAV 403 (599)
Q Consensus 389 ~iP~LGICLGmQll~ 403 (599)
++-+-|.-.|.-+|.
T Consensus 140 G~avgGTSAGAavM~ 154 (293)
T COG4242 140 GIAVGGTSAGAAVMS 154 (293)
T ss_pred CceecccccchhhcC
Confidence 899999999988874
No 370
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=32.17 E-value=52 Score=36.26 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=23.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v 34 (599)
|+.|.||||.-| || |+++.+|+..|+.|
T Consensus 1 m~~IgltG~igs--GK----Stv~~~L~~~G~~v 28 (395)
T PRK03333 1 MLRIGLTGGIGA--GK----STVAARLAELGAVV 28 (395)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 789999999866 56 68888999988876
No 371
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=31.58 E-value=66 Score=35.09 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=32.0
Q ss_pred CCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 007533 8 GGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (599)
Q Consensus 8 ggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln 44 (599)
..-=-|.||=.+|..++..|..+|+||-+|-+||--|
T Consensus 110 ~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 110 TNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred EccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 3344588999999999999999999999999999543
No 372
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=31.53 E-value=3e+02 Score=27.96 Aligned_cols=85 Identities=21% Similarity=0.279 Sum_probs=42.9
Q ss_pred ceEEEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh--ccCCCEEEeCCCCC
Q 007533 295 PVRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFG 371 (599)
Q Consensus 295 ~v~IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIlVPGGfG 371 (599)
+-+|+++= ..+.+.|. .+++.++.+..+....+.+ .++.. +++......+. -.++|||++.+.
T Consensus 26 ~~~I~vi~--~~~~~~f~~~~~~~i~~~~~~~G~~~~~--~~~~~--------d~~~~~~~~~~l~~~~~dgiii~~~-- 91 (295)
T PRK10653 26 KDTIALVV--STLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQN--------NPAKELANVQDLTVRGTKILLINPT-- 91 (295)
T ss_pred CCeEEEEe--cCCCChHHHHHHHHHHHHHHHcCCeEEE--ecCCC--------CHHHHHHHHHHHHHcCCCEEEEcCC--
Confidence 45788773 34455544 5665555555444443322 22211 11111222222 247999999752
Q ss_pred CCchhHHHHHHHHHHHcCCCEEEE
Q 007533 372 NRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 372 ~rg~eg~i~aik~are~~iP~LGI 395 (599)
+.. .....++.+.+.++|+.-+
T Consensus 92 ~~~--~~~~~l~~~~~~~ipvV~~ 113 (295)
T PRK10653 92 DSD--AVGNAVKMANQANIPVITL 113 (295)
T ss_pred ChH--HHHHHHHHHHHCCCCEEEE
Confidence 211 1224566777788897755
No 373
>PRK12829 short chain dehydrogenase; Provisional
Probab=31.42 E-value=57 Score=32.37 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=25.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
|.++||||- ++|| +++...|.++|++|..+-.|
T Consensus 12 ~~vlItGa~-g~iG-----~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 12 LRVLVTGGA-SGIG-----RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEeCCC-CcHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 679999995 5555 67788888999998876533
No 374
>PRK08339 short chain dehydrogenase; Provisional
Probab=31.36 E-value=52 Score=33.29 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++||||- ||||+-+ ...|-++|++|.+.
T Consensus 9 k~~lItGas-~gIG~ai-----a~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTTASS-KGIGFGV-----ARVLARAGADVILL 38 (263)
T ss_pred CEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEEE
Confidence 789999986 7888754 45577789988764
No 375
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.24 E-value=2.5e+02 Score=27.75 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=21.3
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++||||+.+.. . ......++.+++.++|+..+
T Consensus 56 ~~vdgvii~~~~-~---~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 56 RGPDAILLAPTD-A---KALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred hCCCEEEEcCCC-h---hhhHHHHHHHHHCCCCEEEe
Confidence 479999997532 1 11224556667788998765
No 376
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=31.23 E-value=38 Score=36.79 Aligned_cols=80 Identities=21% Similarity=0.431 Sum_probs=48.7
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-----C-----CCCCCcccc-c---eEEEccCCccccCCCCcccc
Q 007533 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-----D-----AGTMSPFEH-G---EVFVLDDGGEVDLDLGNYER 76 (599)
Q Consensus 11 ~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~-----d-----~gtmsp~~h-g---evfv~~dg~e~dldlg~yer 76 (599)
+.|++||-++--+..+|+..|.+=.+|-+=-=+-+ | -|-=+|+.. + .++-+.|++=+ ==|+|||
T Consensus 183 LggIaKGyavD~a~~~L~~~Gv~~~lV~~GGdi~~~G~~~~g~~W~VgI~~P~~~~~~~~~~~~l~~~ava--TSG~Yer 260 (350)
T PRK10461 183 LSTVGEGYAADHLARLMEQEGISRYLVSVGGALSSRGMNGEGQPWRVAIQKPTDKENAVQAVVDINGHGIS--TSGSYRN 260 (350)
T ss_pred cchhHHHHHHHHHHHHHHHCCCCEEEEEcCCcEEEECCCCCCCCCEEEEcCCCCCCCCceEEEEeCCCEEE--ecCccee
Confidence 57999999999999999999986555543211111 0 122344321 1 23334444311 1589999
Q ss_pred ccCCCCCCCCcccchHhhHHHHhhh
Q 007533 77 FMDIKLTRDNNITTGKIYQSVIDKE 101 (599)
Q Consensus 77 fl~~~l~~~~n~ttgkiy~~vi~ke 101 (599)
|... .||-|+++|+--
T Consensus 261 ~~~~---------~g~ry~HIidP~ 276 (350)
T PRK10461 261 YYEL---------DGKRLSHVIDPQ 276 (350)
T ss_pred EEEe---------CCeEEEEeecCC
Confidence 9754 377788888764
No 377
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=31.18 E-value=92 Score=25.26 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=23.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
|+++|+ +|-||...+..+...| .|.++..+.-
T Consensus 2 i~i~G~--~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGG--SGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 678886 5667988888888777 5777777653
No 378
>PRK12828 short chain dehydrogenase; Provisional
Probab=31.01 E-value=62 Score=31.32 Aligned_cols=34 Identities=41% Similarity=0.572 Sum_probs=26.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
|.|+||||- ++|| .++.+.|.++|++|..+--||
T Consensus 8 k~vlItGat-g~iG-----~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 8 KVVAITGGF-GGLG-----RATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CEEEEECCC-CcHh-----HHHHHHHHHCCCeEEEEeCCh
Confidence 679999986 6666 566677888899988776654
No 379
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=30.82 E-value=6.1e+02 Score=27.45 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=59.6
Q ss_pred cccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcCCC
Q 007533 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLNLQ 271 (599)
Q Consensus 192 ~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~l~ 271 (599)
.|--..+.+++-|.+. .|+|++|... ...-..+|-.+.+| ||+.-+ ..+|=...|--+.. |.++
T Consensus 85 ~kgEsl~DTarvls~y---~D~iviR~~~---~~~~~~~a~~s~vP---VINa~~--~~~HPtQaL~Dl~T-i~e~---- 148 (332)
T PRK04284 85 GKKESTKDTARVLGGM---YDGIEYRGFS---QRTVETLAEYSGVP---VWNGLT--DEDHPTQVLADFLT-AKEH---- 148 (332)
T ss_pred CCCcCHHHHHHHHHHh---CCEEEEecCc---hHHHHHHHHhCCCC---EEECCC--CCCChHHHHHHHHH-HHHH----
Confidence 3444666666767555 8999999764 44556666667665 777633 44554433311110 1111
Q ss_pred CCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHcCCccee
Q 007533 272 GTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 327 (599)
Q Consensus 272 ~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v 327 (599)
+ ...-+.+||++||+-. ...-.|.+.++...|+++.+
T Consensus 149 -------------~----~g~l~g~kia~vGD~~--~~v~~Sl~~~~~~~g~~v~~ 185 (332)
T PRK04284 149 -------------L----KKPYKDIKFTYVGDGR--NNVANALMQGAAIMGMDFHL 185 (332)
T ss_pred -------------h----cCCcCCcEEEEecCCC--cchHHHHHHHHHHcCCEEEE
Confidence 0 0012357999999731 22567888999888887755
No 380
>PRK00698 tmk thymidylate kinase; Validated
Probab=30.78 E-value=88 Score=30.05 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
++|+|.| ++|-||...+..+...|...|+.|...
T Consensus 4 ~~I~ieG--~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 4 MFITIEG--IDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 7999998 588899999999999999888765543
No 381
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=30.61 E-value=68 Score=34.76 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=37.2
Q ss_pred ccCCCEEEeCCCCCCCch---hHHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 007533 358 LKGADGILVPGGFGNRGV---QGKILAAKYAREHRIPYLGICLGMQVAVI 404 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~---eg~i~aik~are~~iP~LGICLGmQll~i 404 (599)
...+|-|++.+|.+.... .....+++.+...+.++-|||.|-=+|+-
T Consensus 74 ~~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~ 123 (328)
T COG4977 74 APPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAE 123 (328)
T ss_pred cCcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHH
Confidence 445888888788776433 44788899988999999999999998863
No 382
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=30.57 E-value=52 Score=33.00 Aligned_cols=29 Identities=24% Similarity=0.649 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|-++||||- +|||+.++-. |-..|.+|..
T Consensus 9 k~vlItGas-~gIG~~ia~~-----l~~~G~~v~~ 37 (260)
T PRK08416 9 KTLVISGGT-RGIGKAIVYE-----FAQSGVNIAF 37 (260)
T ss_pred CEEEEeCCC-chHHHHHHHH-----HHHCCCEEEE
Confidence 789999886 8999876644 5567887754
No 383
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=30.51 E-value=66 Score=27.20 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEE-EccCCccccCCC
Q 007533 17 GVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVF-VLDDGGEVDLDL 71 (599)
Q Consensus 17 gi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevf-v~~dg~e~dldl 71 (599)
.+..+.+=..|+..||+|.-+|+|- |.+ =||. ...||..+++.+
T Consensus 28 ~~~~~~~~~~l~~~G~~v~~ve~~~----~g~-------yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 28 WLSIEQAVAKLEAQGYQVREVEFDD----DGC-------YEVEARDKDGKKVEVYV 72 (83)
T ss_pred cCCHHHHHHHHHhcCCceEEEEEcC----CCE-------EEEEEEECCCCEEEEEE
Confidence 3456667778899999999999941 111 2788 777888877754
No 384
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.47 E-value=1.9e+02 Score=28.38 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=44.9
Q ss_pred EEEEeecCCCcchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh--ccCCCEEEeCCCCCCCc
Q 007533 298 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFGNRG 374 (599)
Q Consensus 298 IaiVGkY~~l~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIlVPGGfG~rg 374 (599)
||++-. ...+.|. .+.+.++.+.-+....+.+. .++. .+++...+..+. -.++|||++.....+.
T Consensus 1 I~vi~~--~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~--------~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~- 68 (257)
T PF13407_consen 1 IGVIVP--SMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQ--------NDPEEQIEQIEQAISQGVDGIIVSPVDPDS- 68 (257)
T ss_dssp EEEEES--SSSSHHHHHHHHHHHHHHHHHTCEEEEE-EEST--------TTHHHHHHHHHHHHHTTESEEEEESSSTTT-
T ss_pred cEEEeC--CCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCC--------CCHHHHHHHHHHHHHhcCCEEEecCCCHHH-
Confidence 566633 2333455 46666666655554443332 1222 112222222222 3689999988744322
Q ss_pred hhHHHHHHHHHHHcCCCEEEE
Q 007533 375 VQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 375 ~eg~i~aik~are~~iP~LGI 395 (599)
....++.+.++++|+.-+
T Consensus 69 ---~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 69 ---LAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp ---THHHHHHHHHTTSEEEEE
T ss_pred ---HHHHHHHHhhcCceEEEE
Confidence 235677888999998875
No 385
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=30.42 E-value=61 Score=29.72 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhh-HHHHhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCC
Q 007533 312 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK-AAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRI 390 (599)
Q Consensus 312 ~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~-~a~~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~i 390 (599)
..+.+.|+..|+++... .+.. ++. +.-. .+.+.++++|-||..||-|--..+-..++++.+....+
T Consensus 21 ~~l~~~l~~~G~~~~~~-~~v~---Dd~---------~~I~~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~~~~ 87 (135)
T smart00852 21 PALAELLTELGIEVTRY-VIVP---DDK---------EAIKEALREALERADLVITTGGTGPGPDDVTPEAVAEALGKEL 87 (135)
T ss_pred HHHHHHHHHCCCeEEEE-EEeC---CCH---------HHHHHHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhCCcC
Confidence 35777799999876432 1111 221 1111 12233467999999998663333334455554433344
Q ss_pred CEE
Q 007533 391 PYL 393 (599)
Q Consensus 391 P~L 393 (599)
|+.
T Consensus 88 ~~~ 90 (135)
T smart00852 88 PGF 90 (135)
T ss_pred CCh
Confidence 433
No 386
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=30.41 E-value=1.6e+02 Score=25.91 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHcCCcceeeeEEEEe-cCCCCCCccccCCchhhh-HHHHhccCCCEEEeCCCCC-CCchhHHHHHHHHH
Q 007533 309 DAYLSILKALLHASVDLRKKLVIDWI-PACDLEDATEKENPDAYK-AAWKLLKGADGILVPGGFG-NRGVQGKILAAKYA 385 (599)
Q Consensus 309 DaY~SIi~AL~haG~~~~v~v~i~wi-~s~~le~~~~~~~p~~y~-~a~~~L~~~DGIlVPGGfG-~rg~eg~i~aik~a 385 (599)
.++....+.|+..|..+ +++.+. ..+.+ +.+.|= .....|..||+|++-+|-. ++|. ..-...|
T Consensus 16 ~~f~~~a~~L~~~G~~v---vnPa~~~~~~~~-------~~~~ym~~~l~~L~~cD~i~~l~gWe~S~GA---~~E~~~A 82 (92)
T PF14359_consen 16 PAFNAAAKRLRAKGYEV---VNPAELGIPEGL-------SWEEYMRICLAMLSDCDAIYMLPGWENSRGA---RLEHELA 82 (92)
T ss_pred HHHHHHHHHHHHCCCEE---eCchhhCCCCCC-------CHHHHHHHHHHHHHhCCEEEEcCCcccCcch---HHHHHHH
Confidence 35667888899999654 233333 11111 111221 2234578999999987632 3443 3444556
Q ss_pred HHcCCCEE
Q 007533 386 REHRIPYL 393 (599)
Q Consensus 386 re~~iP~L 393 (599)
+..++|++
T Consensus 83 ~~lGl~V~ 90 (92)
T PF14359_consen 83 KKLGLPVI 90 (92)
T ss_pred HHCCCeEe
Confidence 77777764
No 387
>PRK07024 short chain dehydrogenase; Provisional
Probab=30.34 E-value=54 Score=32.78 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=24.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
+|-|+|||| -+|||+.++ ..|..+|++|..+-.+
T Consensus 2 ~~~vlItGa-s~gIG~~la-----~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALA-----REYARQGATLGLVARR 35 (257)
T ss_pred CCEEEEEcC-CcHHHHHHH-----HHHHHCCCEEEEEeCC
Confidence 467999998 578887665 4466679988775443
No 388
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.28 E-value=2.1e+02 Score=27.45 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=21.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++||||+.+.... .. . .++.+.++++|++.+
T Consensus 54 ~~~d~ii~~~~~~~-~~---~-~~~~l~~~~ip~v~~ 85 (264)
T cd01537 54 RGVDGIIIAPSDLT-AP---T-IVKLARKAGIPVVLV 85 (264)
T ss_pred cCCCEEEEecCCCc-ch---h-HHHHhhhcCCCEEEe
Confidence 47999999764322 11 1 466677788998765
No 389
>PRK06197 short chain dehydrogenase; Provisional
Probab=30.26 E-value=52 Score=33.98 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.|+||||- +|||+.++ +.|..+|++|...
T Consensus 17 k~vlItGas-~gIG~~~a-----~~l~~~G~~vi~~ 46 (306)
T PRK06197 17 RVAVVTGAN-TGLGYETA-----AALAAKGAHVVLA 46 (306)
T ss_pred CEEEEcCCC-CcHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 88888664 4466678877554
No 390
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=30.26 E-value=53 Score=36.10 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.4
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeee-cccccC
Q 007533 12 SGLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNT 45 (599)
Q Consensus 12 s~~gkgi~~~s~g~ll~~~g~~v~~~k~-dpyln~ 45 (599)
-|.||=.+|+.++..|..+|+||-+|-+ ||--|.
T Consensus 116 GGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 3569999999999999999999999995 997664
No 391
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.15 E-value=67 Score=32.62 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=26.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
|+|||| .|-+-+.+..-|.++|+.|..+.-.+
T Consensus 3 ILVtG~------tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 3 ILVTGG------AGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEEEcC------cccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999998 56777899999999999988776433
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.08 E-value=75 Score=36.84 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~--g~~v~~~k~dpy 42 (599)
+.|.++|. +|.||=.+++.|+..+..+ |.+|..+-.|+|
T Consensus 351 ~vIaLVGP--tGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 351 GVIALVGP--TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 35667775 7999999999999887665 579999999988
No 393
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=29.97 E-value=2.3e+02 Score=29.00 Aligned_cols=32 Identities=28% Similarity=0.174 Sum_probs=20.6
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 394 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LG 394 (599)
.++|||++.+.. ......+++.+.++++|+.-
T Consensus 55 ~~~DgiIi~~~~----~~~~~~~~~~~~~~~iPvV~ 86 (298)
T cd06302 55 QGVDAIAVVPND----PDALEPVLKKAREAGIKVVT 86 (298)
T ss_pred cCCCEEEEecCC----HHHHHHHHHHHHHCCCeEEE
Confidence 579999997521 22234556667778888654
No 394
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.87 E-value=60 Score=31.68 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|.|+||||- ++||. .+.+.|.+.|++|..
T Consensus 6 ~~vlItGa~-g~iG~-----~~a~~l~~~G~~V~~ 34 (238)
T PRK05786 6 KKVAIIGVS-EGLGY-----AVAYFALKEGAQVCI 34 (238)
T ss_pred cEEEEECCC-chHHH-----HHHHHHHHCCCEEEE
Confidence 689999995 66664 555677788988765
No 395
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=29.84 E-value=1.7e+02 Score=28.07 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=55.4
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCC-CEEEeCC-CCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGA-DGILVPG-GFG 371 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~-DGIlVPG-GfG 371 (599)
+||+|=-|...+ +-+..+.+.|+..|.++.= .-+.+.+ ....-|+.-+.+.+.+ ..+ -||++.| |-|
T Consensus 1 MkI~igsDhaG~-~lK~~l~~~L~~~g~eV~D------~G~~~~~--~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG 71 (148)
T TIGR02133 1 MRVVLGHDHAGF-EYKEALWLDLAAHEPEVCD------VGVYDAD--DDDDYPCFCIAAAEAVARDAADLGIVIGGSGNG 71 (148)
T ss_pred CEEEEEeCchhH-HHHHHHHHHHHHCCCEEEE------CCCCCCC--CCCCchHHHHHHHHHHhcCCCceEEEEcCCChh
Confidence 467765554433 2345788899999876511 1111111 0111232222222222 233 4999999 544
Q ss_pred C-------Cch----hHHHHHHHHHHH-cCCCEEEEehhHHHHHHHhccccc
Q 007533 372 N-------RGV----QGKILAAKYARE-HRIPYLGICLGMQVAVIEFARSVL 411 (599)
Q Consensus 372 ~-------rg~----eg~i~aik~are-~~iP~LGICLGmQll~iefgr~Vl 411 (599)
- +|+ -.-...++.+|+ |+--+ +|+|..++..+.+.+++
T Consensus 72 ~siaANK~~GiRAA~~~d~~sA~~ar~hNnaNV--l~lG~r~ig~~~a~~iv 121 (148)
T TIGR02133 72 EAIAANKVKGARAALAWDTASAGRARLHNNANV--VGAGMRMHGLEEAFRLV 121 (148)
T ss_pred heeeecccCCeEEEEECCHHHHHHHHHHcCCcE--EEECCcccCHHHHHHHH
Confidence 3 122 112344555665 44554 68999999988887764
No 396
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=29.81 E-value=2.2e+02 Score=31.70 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=44.7
Q ss_pred eEEEEEeecCCCcchHHH-HHHHHHHcCCcceeeeEEEEecCCC------CCCccccCCchhhhHHHHhccCCCEEEeCC
Q 007533 296 VRIAMVGKYTGLSDAYLS-ILKALLHASVDLRKKLVIDWIPACD------LEDATEKENPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~S-Ii~AL~haG~~~~v~v~i~wi~s~~------le~~~~~~~p~~y~~a~~~L~~~DGIlVPG 368 (599)
.+|.++| .+. +=.| +.+.|.+.|+++.. .|... |+.....-.. .+ ..+.+.++|-||+++
T Consensus 8 ~~v~viG-~G~---sG~s~~a~~L~~~G~~V~~------~D~~~~~~~~~l~~~gi~~~~-~~--~~~~~~~~d~vv~sp 74 (461)
T PRK00421 8 KRIHFVG-IGG---IGMSGLAEVLLNLGYKVSG------SDLKESAVTQRLLELGAIIFI-GH--DAENIKDADVVVYSS 74 (461)
T ss_pred CEEEEEE-Ech---hhHHHHHHHHHhCCCeEEE------ECCCCChHHHHHHHCCCEEeC-CC--CHHHCCCCCEEEECC
Confidence 4788988 442 3366 79999999998754 22211 1100000000 00 013456899999999
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCEEE
Q 007533 369 GFGNRGVQGKILAAKYAREHRIPYLG 394 (599)
Q Consensus 369 GfG~rg~eg~i~aik~are~~iP~LG 394 (599)
|.-... ..++.|++.++|+++
T Consensus 75 gi~~~~-----~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 75 AIPDDN-----PELVAARELGIPVVR 95 (461)
T ss_pred CCCCCC-----HHHHHHHHCCCcEEe
Confidence 854321 235556666777665
No 397
>PRK00889 adenylylsulfate kinase; Provisional
Probab=29.79 E-value=1e+02 Score=29.25 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
+.|+++| .+|-||=.+|..+...|+..|.+|..+-.|.
T Consensus 5 ~~i~~~G--~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTG--LSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 3566666 6899999999999999999998888775553
No 398
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=29.74 E-value=1.8e+02 Score=32.76 Aligned_cols=93 Identities=27% Similarity=0.504 Sum_probs=68.0
Q ss_pred CccccCCCCccccccCCCCCCC---------------CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHH
Q 007533 64 GGEVDLDLGNYERFMDIKLTRD---------------NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERV 128 (599)
Q Consensus 64 g~e~dldlg~yerfl~~~l~~~---------------~n~ttgkiy~~vi~ker~g~ylg~tvqviphit~~i~~~i~~~ 128 (599)
-.|+-|||-|+=||=--++.++ .----|+|-+..|+|||.+- .|--+||+..
T Consensus 119 ~veVPlDlDHFG~yGpMRfPkeIt~C~G~CY~~GpPf~gCPR~RIHkRLidKEk~~~-------------~e~eeWikLs 185 (505)
T PF10113_consen 119 NVEVPLDLDHFGKYGPMRFPKEITHCGGDCYNEGPPFKGCPRGRIHKRLIDKEKEYL-------------EEFEEWIKLS 185 (505)
T ss_pred hcCCCcchhhhcccCCccCChHHhCCchhhhccCCCCCCCchHHHHHHHHHHHHhhh-------------hhHHHHHHHh
Confidence 4578899999999877777664 22345789999999999864 4778999988
Q ss_pred hcccCCCCCCCCcEEEEeeCccccccccchHHHHH--HHhhhHcCCCCEEEEee
Q 007533 129 AMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEAL--GQFSYRVGPGNFCLIHV 180 (599)
Q Consensus 129 ~~~p~d~~~~~~dv~i~e~ggtvgdies~pf~ea~--rq~~~~~g~~n~~~ihv 180 (599)
+. .-|=++|..| |+--..|.=||. .++..+.|+.==..+||
T Consensus 186 ss---------V~VNl~~eQg--~e~HaApldE~~~Va~~Akk~gkGveaI~~v 228 (505)
T PF10113_consen 186 SS---------VCVNLTEEQG--GEEHAAPLDEMEEVAELAKKYGKGVEAIMHV 228 (505)
T ss_pred hh---------heEEeeeccC--CcccCCCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 74 2455677777 666677877764 56777788775566665
No 399
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=29.72 E-value=60 Score=32.57 Aligned_cols=30 Identities=47% Similarity=0.674 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++||||- +|||+.+ .+.|...|++|..+
T Consensus 6 k~vlItGas-~gIG~~i-----a~~l~~~G~~V~~~ 35 (262)
T TIGR03325 6 EVVLVTGGA-SGLGRAI-----VDRFVAEGARVAVL 35 (262)
T ss_pred cEEEEECCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 789999984 7888654 45667789988764
No 400
>PRK08703 short chain dehydrogenase; Provisional
Probab=29.70 E-value=63 Score=31.78 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++|||| -+|||+.+ .+.|.++|++|...
T Consensus 7 k~vlItG~-sggiG~~l-----a~~l~~~g~~V~~~ 36 (239)
T PRK08703 7 KTILVTGA-SQGLGEQV-----AKAYAAAGATVILV 36 (239)
T ss_pred CEEEEECC-CCcHHHHH-----HHHHHHcCCEEEEE
Confidence 78999987 68888865 44566789988753
No 401
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.70 E-value=1.5e+02 Score=33.30 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccC----------CchhhhHHHHhccC
Q 007533 291 GLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKE----------NPDAYKAAWKLLKG 360 (599)
Q Consensus 291 ~~~~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~----------~p~~y~~a~~~L~~ 360 (599)
+.....+|+|+| ++... .+..+.|.. |+++.+ .|..........+ .+ +.+.+
T Consensus 2 ~~~~~~~v~v~G-~G~sG---~a~~~~L~~-g~~v~v------~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 63 (454)
T PRK01368 2 NSHTKQKIGVFG-LGKTG---ISVYEELQN-KYDVIV------YDDLKANRDIFEELYSKNAIAALSD-------SRWQN 63 (454)
T ss_pred cCCCCCEEEEEe-ecHHH---HHHHHHHhC-CCEEEE------ECCCCCchHHHHhhhcCceeccCCh-------hHhhC
Q ss_pred CCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEE
Q 007533 361 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 394 (599)
Q Consensus 361 ~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LG 394 (599)
+|-||+++|.-... ..+++|+++++|+++
T Consensus 64 ~d~vV~SPgI~~~~-----p~~~~a~~~gi~v~~ 92 (454)
T PRK01368 64 LDKIVLSPGIPLTH-----EIVKIAKNFNIPITS 92 (454)
T ss_pred CCEEEECCCCCCCC-----HHHHHHHHCCCceec
No 402
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.68 E-value=63 Score=33.69 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=27.1
Q ss_pred EEEeCCccCCcchHHHHHH-HHHHHHHCCCeeEEeeecc
Q 007533 4 VLVTGGVVSGLGKGVTASS-IGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s-~g~ll~~~g~~v~~~k~dp 41 (599)
|-|||= -|.||=.+||. +-++++..|++|..+--||
T Consensus 3 IaI~GK--GG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 3 IAITGK--GGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred EEEecC--CCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 445542 36799999999 5555555569999999999
No 403
>PRK11519 tyrosine kinase; Provisional
Probab=29.63 E-value=85 Score=37.34 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=36.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|.|.||+. .+|-||-.+|+.++..|...|.||-.|-.|+.
T Consensus 527 kvi~vts~-~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 527 NVLMMTGV-SPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 56777764 67999999999999999999999999999986
No 404
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=29.57 E-value=64 Score=35.75 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=32.4
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 2 k~i~vtgg----------v~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
|-|+|||| .+|--.-|.+..++...|..+|.+|+.+--
T Consensus 189 k~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~ 236 (399)
T PRK05579 189 KRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSG 236 (399)
T ss_pred CEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCC
Confidence 57899999 677777788888999999999999998743
No 405
>PRK08017 oxidoreductase; Provisional
Probab=29.53 E-value=63 Score=31.92 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
|-|+|||| -++||+ ++.+.|..+|++|..+-.
T Consensus 3 k~vlVtGa-sg~IG~-----~la~~l~~~g~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGC-SSGIGL-----EAALELKRRGYRVLAACR 34 (256)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeC
Confidence 67999998 466776 455667788999877543
No 406
>PRK05876 short chain dehydrogenase; Provisional
Probab=29.51 E-value=62 Score=33.11 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|-++||||- ||||+.+ ...|.++|++|...
T Consensus 7 k~vlVTGas-~gIG~al-----a~~La~~G~~Vv~~ 36 (275)
T PRK05876 7 RGAVITGGA-SGIGLAT-----GTEFARRGARVVLG 36 (275)
T ss_pred CEEEEeCCC-chHHHHH-----HHHHHHCCCEEEEE
Confidence 679999995 8998754 55667789988764
No 407
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.44 E-value=2.1e+02 Score=32.14 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=45.3
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCc----cccCCc---hhhhHHHHhccCCCEEEeCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDA----TEKENP---DAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~----~~~~~p---~~y~~a~~~L~~~DGIlVPG 368 (599)
.+|+|+| ++. +=.+..+.|.+.|+.+.+ .|..+..+. ...+.. ...|. .+.+.++|-||+++
T Consensus 9 ~~v~v~G-~G~---sG~~~~~~l~~~g~~v~~------~d~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~d~vV~Sp 77 (468)
T PRK04690 9 RRVALWG-WGR---EGRAAYRALRAHLPAQAL------TLFCNAVEAREVGALADAALLVETEAS-AQRLAAFDVVVKSP 77 (468)
T ss_pred CEEEEEc-cch---hhHHHHHHHHHcCCEEEE------EcCCCcccchHHHHHhhcCEEEeCCCC-hHHccCCCEEEECC
Confidence 3789998 553 447899999999998754 222111100 000000 00011 12356789999988
Q ss_pred CCCCCchhHHHHHHHHHHHcCCCEEE
Q 007533 369 GFGNRGVQGKILAAKYAREHRIPYLG 394 (599)
Q Consensus 369 GfG~rg~eg~i~aik~are~~iP~LG 394 (599)
|--... ..++.|++.++|+.+
T Consensus 78 gI~~~~-----p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 78 GISPYR-----PEALAAAARGTPFIG 98 (468)
T ss_pred CCCCCC-----HHHHHHHHcCCcEEE
Confidence 744321 235556666677666
No 408
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=29.41 E-value=84 Score=32.61 Aligned_cols=34 Identities=41% Similarity=0.400 Sum_probs=27.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
|.|+||||- |-+.+.+-..|.++|++|...-.|+
T Consensus 6 k~vlVtG~~------G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 6 KVVCVTGAS------GYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CEEEEECCc------hHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 789999974 6677888888888999998765555
No 409
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.39 E-value=70 Score=31.15 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
-++++|. +|.||=-.|++||.-+-.+|++|..+..+-.+
T Consensus 49 ~l~l~G~--~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 49 NLILYGP--PGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred EEEEEhh--HhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 4678886 79999999999999888899999998876443
No 410
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=29.26 E-value=68 Score=30.33 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll 27 (599)
++.|+|+|+ +|-||...|..|..-+
T Consensus 3 ~~ii~i~G~--~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG--PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 468999998 9999999998887643
No 411
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.22 E-value=2.8e+02 Score=27.40 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=21.0
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++||||+.+... . .....++.+.+.++|+.-+
T Consensus 54 ~~~dgiii~~~~~-~---~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 54 KGVSGIIISPTNS-S---AAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred cCCCEEEEcCCch-h---hhHHHHHHHHHCCCCEEEE
Confidence 6899999865321 1 1224556677788998643
No 412
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=29.09 E-value=65 Score=33.95 Aligned_cols=54 Identities=33% Similarity=0.567 Sum_probs=36.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg~e~dldlg~yerfl~ 79 (599)
|=+|| .-|.||=.....+++.|..+|.+|.++-+||= ||+-.|-. ||.=-|.-.
T Consensus 32 iGiTG--~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS--------Sp~tGGAl------------LGDRiRM~~ 85 (266)
T PF03308_consen 32 IGITG--PPGAGKSTLIDALIRELRERGKRVAVLAVDPS--------SPFTGGAL------------LGDRIRMQE 85 (266)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG--------GGCC---S------------S--GGGCHH
T ss_pred EEeeC--CCCCcHHHHHHHHHHHHhhcCCceEEEEECCC--------CCCCCCcc------------cccHHHhcC
Confidence 33555 35889999999999999999999999999995 78877764 666666543
No 413
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=28.96 E-value=75 Score=30.19 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=32.3
Q ss_pred CceEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCC
Q 007533 294 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 369 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGG 369 (599)
...+|++||-+. -+++.|+..+.++.+- -.+++....... .-+.. ++.+.|..+|.++++|-
T Consensus 10 ~~~~V~~VG~f~-------P~~~~l~~~~~~v~v~----d~~~~~~~~~~~-~~~~~--~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 10 PGDKVGMVGYFQ-------PLVEKLKERGAEVRVF----DLNPDNIGEEPG-DVPDE--DAEEILPWADVVIITGS 71 (147)
T ss_dssp TTSEEEEES--H-------CCHHHHCCCCSEEEEE----ESSGGG--SSCT--EEGG--GHHHHGGG-SEEEEECH
T ss_pred CCCEEEEEcCcH-------HHHHHHhcCCCCEEEE----ECCCCCCCCCCC-cCCHH--HHHHHHccCCEEEEEee
Confidence 457999999332 3578887666665441 111111110000 00111 24467999999999994
No 414
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.96 E-value=1.4e+02 Score=31.83 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=27.3
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICL 397 (599)
..+|.+++-||-|+ +..+++.....++|++||=.
T Consensus 56 ~~~d~vi~~GGDGT-----~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGDGT-----VLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCcHH-----HHHHHHHhccCCCCEEEEec
Confidence 46899999998663 56677776677999999987
No 415
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.89 E-value=2e+02 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=20.2
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 393 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~L 393 (599)
.++|||++.+.. . +.....++.+.+.++|+.
T Consensus 54 ~~~Dgiii~~~~--~--~~~~~~i~~~~~~~iPvV 84 (282)
T cd06318 54 RGVNVLIINPVD--P--EGLVPAVAAAKAAGVPVV 84 (282)
T ss_pred cCCCEEEEecCC--c--cchHHHHHHHHHCCCCEE
Confidence 589999997632 1 122345677778888864
No 416
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.80 E-value=56 Score=33.86 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.|+|||| -||||+.++ ..|..+|++|..+
T Consensus 41 k~vlItGa-sggIG~~la-----~~La~~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGA-SSGIGEAAA-----EQFARRGATVVAV 70 (293)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCEEEEE
Confidence 67999998 478887654 4456679887654
No 417
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=28.69 E-value=3.3e+02 Score=27.95 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=40.6
Q ss_pred CceEEEEEeecCCCcchH-HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHh--ccCCCEEEeCCCC
Q 007533 294 EPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGF 370 (599)
Q Consensus 294 ~~v~IaiVGkY~~l~DaY-~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIlVPGGf 370 (599)
++..|+++-. .+.+.| ..+++.++.+..+....+.+.+ +.+ +++.-..+.+. -.++||||+.+..
T Consensus 60 ~~~~Igvv~~--~~~~~~~~~l~~gi~~~~~~~g~~~~~~~--~~~--------~~~~~~~~~~~l~~~~vdgiIi~~~~ 127 (328)
T PRK11303 60 RTRSIGLIIP--DLENTSYARIAKYLERQARQRGYQLLIAC--SDD--------QPDNEMRCAEHLLQRQVDALIVSTSL 127 (328)
T ss_pred CCceEEEEeC--CCCCchHHHHHHHHHHHHHHcCCEEEEEe--CCC--------CHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3457888732 333444 4566666655444433333322 211 11111112222 2579999997643
Q ss_pred CCCchhHHHHHHHHHHHcCCCEEE
Q 007533 371 GNRGVQGKILAAKYAREHRIPYLG 394 (599)
Q Consensus 371 G~rg~eg~i~aik~are~~iP~LG 394 (599)
.. .. ..++.+.+.++|+.-
T Consensus 128 ~~--~~---~~~~~l~~~~iPvV~ 146 (328)
T PRK11303 128 PP--EH---PFYQRLQNDGLPIIA 146 (328)
T ss_pred CC--Ch---HHHHHHHhcCCCEEE
Confidence 21 11 234555667888753
No 418
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=28.66 E-value=73 Score=34.66 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=28.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
|.|=|||- =|||-|++=|..+|++.|+||-..-
T Consensus 19 ~vI~VtGT----NGKgSt~~~l~~iL~~~g~~vg~~t 51 (397)
T TIGR01499 19 PVIHVAGT----NGKGSTCAFLESILRAAGYKVGLFT 51 (397)
T ss_pred CEEEEeCC----CChHHHHHHHHHHHHHcCCCeeEEe
Confidence 56777774 5999999999999999999996653
No 419
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=28.64 E-value=63 Score=34.37 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=17.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v 34 (599)
|+.|+||| +||-||-.+. ..|+..||-+
T Consensus 1 m~~vIiTG--lSGaGKs~Al----~~lED~Gy~c 28 (284)
T PF03668_consen 1 MELVIITG--LSGAGKSTAL----RALEDLGYYC 28 (284)
T ss_pred CeEEEEeC--CCcCCHHHHH----HHHHhcCeeE
Confidence 66777777 6777774433 4566666654
No 420
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.52 E-value=78 Score=25.84 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccc
Q 007533 14 LGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFE 54 (599)
Q Consensus 14 ~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~ 54 (599)
+|=|++.-+.+..|+..|++|+++--.+++- |.+..+.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G---G~~~~~~ 39 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDRLG---GRARSFR 39 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSSSS---GGGCEEE
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcccC---cceeEEE
Confidence 5778999999999999999999999888863 4444443
No 421
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=28.50 E-value=1.1e+02 Score=28.65 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCCcEEEEeeCcccccccc-----chHHHHHHHhhhHcCCCCEEEEeeeeeee
Q 007533 138 GPVDVCVIELGGTIGDIES-----MPFIEALGQFSYRVGPGNFCLIHVSLVPV 185 (599)
Q Consensus 138 ~~~dv~i~e~ggtvgdies-----~pf~ea~rq~~~~~g~~n~~~ihv~~vp~ 185 (599)
.+||+|||++|+ .|+.. .-|.+.+++|-.++...+.-.|=++.-|.
T Consensus 66 ~~~d~vii~~G~--ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~ 116 (185)
T cd01832 66 LRPDLVTLLAGG--NDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDP 116 (185)
T ss_pred cCCCEEEEeccc--cccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 489999999995 45532 23677777777777544554444554443
No 422
>PF12846 AAA_10: AAA-like domain
Probab=28.28 E-value=91 Score=31.40 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
-++|+|. +|-||=.++.++-.-+-.+|..|-++ ||
T Consensus 3 h~~i~G~--tGsGKT~~~~~l~~~~~~~g~~~~i~--D~ 37 (304)
T PF12846_consen 3 HTLILGK--TGSGKTTLLKNLLEQLIRRGPRVVIF--DP 37 (304)
T ss_pred eEEEECC--CCCcHHHHHHHHHHHHHHcCCCEEEE--cC
Confidence 4678885 79999999999999899999888777 66
No 423
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.25 E-value=2.5e+02 Score=28.34 Aligned_cols=33 Identities=18% Similarity=-0.039 Sum_probs=21.1
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+.. . ......++.+++.++|+.-+
T Consensus 55 ~~~dgiii~~~~--~--~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 55 QKPDIIISIPVD--P--VSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred hCCCEEEEcCCC--c--hhhhHHHHHHHHcCCcEEEe
Confidence 589999996522 1 11224567777889997643
No 424
>PRK05717 oxidoreductase; Validated
Probab=28.10 E-value=64 Score=32.15 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++||||- +|||+.++ +.|-++|.+|.++
T Consensus 11 k~vlItG~s-g~IG~~~a-----~~l~~~g~~v~~~ 40 (255)
T PRK05717 11 RVALVTGAA-RGIGLGIA-----AWLIAEGWQVVLA 40 (255)
T ss_pred CEEEEeCCc-chHHHHHH-----HHHHHcCCEEEEE
Confidence 789999995 67776554 6666778888765
No 425
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.09 E-value=1.1e+02 Score=33.93 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=42.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC-C-CCccccceEEEccCCccccCCCCc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG-T-MSPFEHGEVFVLDDGGEVDLDLGN 73 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~g-t-msp~~hgevfv~~dg~e~dldlg~ 73 (599)
|.|-||| +-||-.|++=|+.+|+..|+++..-. |+-.. + +.+..-.+++|++=+ |-+||+-|
T Consensus 115 ~vI~VTG----T~GKTTTt~ll~~iL~~~g~~~~~~g-----nig~~~~~~~~~~~~~~~V~E~~-~~~ld~t~ 178 (460)
T PRK01390 115 PFIAITG----TNGKSTTTALIAHILREAGRDVQMGG-----NIGTAVLTLEPPPAGRVYVLELS-SYQIDLAP 178 (460)
T ss_pred CEEEEeC----CCcHHHHHHHHHHHHHhcCCCeEEcC-----ccchhhhhcccCCCCCEEEEEcC-cccccccc
Confidence 5678888 57999999999999999999875432 32221 1 112123489999877 44666654
No 426
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=28.09 E-value=2.4e+02 Score=27.80 Aligned_cols=31 Identities=13% Similarity=0.375 Sum_probs=19.9
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+...+. . .++.+++.++|+.-+
T Consensus 54 ~~vdgiii~~~~~~~----~--~~~~~~~~~ipvV~~ 84 (264)
T cd06274 54 RQVDALIVAGSLPPD----D--PYYLCQKAGLPVVAL 84 (264)
T ss_pred cCCCEEEEcCCCCch----H--HHHHHHhcCCCEEEe
Confidence 589999998753211 1 155667778886544
No 427
>PRK07831 short chain dehydrogenase; Provisional
Probab=28.08 E-value=72 Score=31.92 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=23.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|-++||||-=||||..++ +.|.++|++|.+.
T Consensus 18 k~vlItG~sg~gIG~~ia-----~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATA-----RRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHHHH-----HHHHHcCCEEEEE
Confidence 679999997568987555 6677889987653
No 428
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=28.08 E-value=84 Score=27.26 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCC
Q 007533 310 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 368 (599)
Q Consensus 310 aY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPG 368 (599)
+...|.++|+..|+++.- ++. +..+.++|+++++|
T Consensus 9 ~Ls~v~~~L~~~GyeVv~-----------l~~-------------~~~~~~~daiVvtG 43 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVD-----------LEN-------------EQDLQNVDAIVVTG 43 (80)
T ss_pred CchHHHHHHHHCCCEEEe-----------cCC-------------ccccCCcCEEEEEC
Confidence 456899999999999732 211 02478999999999
No 429
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.00 E-value=94 Score=32.37 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=96.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC-ccccCCCCccccccCC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG-GEVDLDLGNYERFMDI 80 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln~d~gtmsp~~hgevfv~~dg-~e~dldlg~yerfl~~ 80 (599)
+.|.||.| ..|.||-.+|+.++..|...|+||-.+-.|=| .|..|-..=+ ++. +-+++--|.+
T Consensus 58 ~~I~V~S~-kgGvGKStva~nLA~alA~~G~rVlliDaD~~--------gps~~~~l~~-~~~~g~~~~~~g~~------ 121 (265)
T COG0489 58 NVIAVTSG-KGGVGKSTVAVNLAAALAQLGKRVLLLDADLR--------GPSIPRMLGL-ENLPGLTELLAGEA------ 121 (265)
T ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCC--------CCchHHHhCC-CCCCCcccccCCCc------
Confidence 45666665 47999999999999999999999999877754 3333322111 110 2233333332
Q ss_pred CCCCCCcccchHhhHHHHhhh-hcCCCCCCeeEEccc------chHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc
Q 007533 81 KLTRDNNITTGKIYQSVIDKE-RKGDYLGKTVQVVPH------ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD 153 (599)
Q Consensus 81 ~l~~~~n~ttgkiy~~vi~ke-r~g~ylg~tvqviph------it~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtvgd 153 (599)
++.++..- .++=..+-.+. .|+ .+..+++.|..+. +..+|++||+..==.||
T Consensus 122 -------------~~~~~~~~~~~~lsi~~~~~-~p~~~r~~l~s~~~~qll~~~~-------~~~~D~vIID~PP~~g~ 180 (265)
T COG0489 122 -------------LEPVIQHDGIKVLSILPLGP-VPVIPRGLLGSKAMLQLLEDVL-------WGEYDYVIIDTPPGTGD 180 (265)
T ss_pred -------------cccceecCccceEEEEecCC-CCCCChHhhhhHHHHHHHHHHh-------ccCCCEEEEeCCCCchH
Confidence 22222222 11111111111 334 4567888888885 45699999999987888
Q ss_pred cccchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEe
Q 007533 154 IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (599)
Q Consensus 154 ies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R 217 (599)
.... =++.-.. ..| ...+-++-...=.+.++..|+..++..-++|.-
T Consensus 181 ~d~~-------i~~~~~~----g~v------iVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~N 227 (265)
T COG0489 181 ADAT-------VLQRIPD----GVV------IVTTPGKTALEDVKKAIDMLEKAGIPVLGVVEN 227 (265)
T ss_pred HHHH-------HHhccCC----eEE------EEeCCccchHHHHHHHHHHHHhcCCceEEEEec
Confidence 3322 2222211 111 122346666666777888999999888888765
No 430
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.97 E-value=4.1e+02 Score=23.21 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=25.9
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007533 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICL 397 (599)
+..-|.+|+-.-.|.. ...+.+++.|++++.|+++|+-
T Consensus 58 ~~~~~~~i~iS~~g~~--~~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 58 LTPGDVVIAISFSGET--KETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred CCCCCEEEEEeCCCCC--HHHHHHHHHHHHcCCeEEEEcC
Confidence 4444555544434443 4578899999999999999874
No 431
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=27.94 E-value=49 Score=34.97 Aligned_cols=20 Identities=50% Similarity=0.782 Sum_probs=13.5
Q ss_pred CEEEEEeCCccCCcchHHHHHH
Q 007533 1 MKYVLVTGGVVSGLGKGVTASS 22 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s 22 (599)
|+.|+||| +||-||.++.-|
T Consensus 1 m~lvIVTG--lSGAGKsvAl~~ 20 (286)
T COG1660 1 MRLVIVTG--LSGAGKSVALRV 20 (286)
T ss_pred CcEEEEec--CCCCcHHHHHHH
Confidence 56677777 677777766644
No 432
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=27.89 E-value=2.7e+02 Score=27.35 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=20.5
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+.... ..+++.++++++|++.+
T Consensus 54 ~~vdgiii~~~~~~------~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 54 RGVDGLALIGLDHS------PALLDLLARRGVPYVAT 84 (268)
T ss_pred cCCCEEEEeCCCCC------HHHHHHHHhCCCCEEEE
Confidence 36999998753221 23456677789998765
No 433
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.83 E-value=1.1e+02 Score=26.84 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=31.0
Q ss_pred EEEEEeCCccCCcchHHH-HHHHHHHHHHCCCeeEEeeeccc
Q 007533 2 KYVLVTGGVVSGLGKGVT-ASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~-~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
|.++||| ||+|-... +..+=.+|+.+|+.+.....+.+
T Consensus 4 kILvvCg---sG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 4 KIIVACG---GAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred eEEEECC---CchhHHHHHHHHHHHHHHHCCCeEEEEEecHH
Confidence 4678888 68888887 68888999999999988886554
No 434
>PRK09620 hypothetical protein; Provisional
Probab=27.75 E-value=80 Score=32.24 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=31.6
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtgg----------v~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|-|+||+| .+|--=-|-+.+.|...|..+|++|+.+
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEE
Confidence 55889988 6777777999999999999999999986
No 435
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=27.65 E-value=3e+02 Score=26.70 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=21.6
Q ss_pred hccCCCEEEeCCC--CCCCchhHHHHHHHHH--HHcCCCEEEEehh
Q 007533 357 LLKGADGILVPGG--FGNRGVQGKILAAKYA--REHRIPYLGICLG 398 (599)
Q Consensus 357 ~L~~~DGIlVPGG--fG~rg~eg~i~aik~a--re~~iP~LGICLG 398 (599)
.+.++|.|++.++ .|... ..+...++.. .-+++|+.=.|.|
T Consensus 43 ~l~~yD~vIlGspi~~G~~~-~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 43 DLSDYDRVVIGASIRYGHFH-SALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred CHHHCCEEEEECccccCCcC-HHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4778999988775 23321 2222233221 1245676666666
No 436
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.60 E-value=67 Score=32.46 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=22.9
Q ss_pred EEEEEeCC-ccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGG-VVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtgg-v~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|.++|||| --+|||+.++ +.|-..|.+|..
T Consensus 7 k~~lITGa~~~~GIG~a~a-----~~l~~~G~~v~~ 37 (261)
T PRK08690 7 KKILITGMISERSIAYGIA-----KACREQGAELAF 37 (261)
T ss_pred cEEEEECCCCCCcHHHHHH-----HHHHHCCCEEEE
Confidence 68999998 4689998755 446678988853
No 437
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.52 E-value=3.3e+02 Score=26.75 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=20.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+. .... ....++.+++.++|+.-+
T Consensus 54 ~~vdgiii~~~-~~~~---~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 54 KKVDAIVLSPV-DSKG---IRAAIAKAKKAGIPVITV 86 (267)
T ss_pred cCCCEEEEcCC-Chhh---hHHHHHHHHHCCCCEEEE
Confidence 58999999652 1111 123456677778998765
No 438
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=27.41 E-value=61 Score=32.41 Aligned_cols=29 Identities=38% Similarity=0.383 Sum_probs=22.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
-++||||- +|||+.++ +.|..+|++|.+.
T Consensus 2 ~vlItGas-~gIG~aia-----~~l~~~G~~V~~~ 30 (259)
T PRK08340 2 NVLVTASS-RGIGFNVA-----RELLKKGARVVIS 30 (259)
T ss_pred eEEEEcCC-cHHHHHHH-----HHHHHcCCEEEEE
Confidence 38899985 88887654 5677889988765
No 439
>PRK07814 short chain dehydrogenase; Provisional
Probab=27.24 E-value=69 Score=32.17 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
|.++|||| -+|||+ ++.+.|.++|++|...-.+|
T Consensus 11 ~~vlItGa-sggIG~-----~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 11 QVAVVTGA-GRGLGA-----AIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 67899998 456665 45567778999987765444
No 440
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.20 E-value=72 Score=31.78 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|.++||||- ||||+. +.+.|-++|++|..
T Consensus 8 k~~lItGas-~gIG~~-----~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGGT-RGIGRA-----IAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCEEEE
Confidence 789999995 888875 45667778988864
No 441
>PRK07806 short chain dehydrogenase; Provisional
Probab=27.19 E-value=77 Score=31.19 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=21.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|-|+||||- +|||+.++. .|.+.|++|..
T Consensus 7 k~vlItGas-ggiG~~l~~-----~l~~~G~~V~~ 35 (248)
T PRK07806 7 KTALVTGSS-RGIGADTAK-----ILAGAGAHVVV 35 (248)
T ss_pred cEEEEECCC-CcHHHHHHH-----HHHHCCCEEEE
Confidence 789999984 889987754 34567887765
No 442
>PRK08309 short chain dehydrogenase; Provisional
Probab=27.17 E-value=98 Score=30.19 Aligned_cols=29 Identities=38% Similarity=0.639 Sum_probs=20.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|+ ++|||| ||+|+ + +-..|..+|++|.+.
T Consensus 1 m~-vlVtGG--tG~gg----~-la~~L~~~G~~V~v~ 29 (177)
T PRK08309 1 MH-ALVIGG--TGMLK----R-VSLWLCEKGFHVSVI 29 (177)
T ss_pred CE-EEEECc--CHHHH----H-HHHHHHHCcCEEEEE
Confidence 44 789999 45553 3 666777899999864
No 443
>PRK04296 thymidine kinase; Provisional
Probab=27.06 E-value=1.4e+02 Score=29.16 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=27.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeecccccC
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPYLNT 45 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~--~~g~~v~~~k~dpyln~ 45 (599)
+.+++||.+ |+|-|++.++.+.. .+|.+|-++| |.+..
T Consensus 3 ~i~litG~~----GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~ 42 (190)
T PRK04296 3 KLEFIYGAM----NSGKSTELLQRAYNYEERGMKVLVFK--PAIDD 42 (190)
T ss_pred EEEEEECCC----CCHHHHHHHHHHHHHHHcCCeEEEEe--ccccc
Confidence 456777753 78888888888755 4799998885 54433
No 444
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=27.03 E-value=44 Score=34.75 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=20.4
Q ss_pred hccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007533 357 LLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 357 ~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICL 397 (599)
...+.|+++++....- ....-..++.+.+.++|++|..-
T Consensus 181 l~~~~da~~~~~~~~~--~~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 181 LAEKVDALYLLPDNLV--DSNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp HCTT-SEEEE-S-HHH--HHTHHHHHHHCCCTT--EEESSH
T ss_pred hhccCCEEEEECCcch--HhHHHHHHHHHHhcCCCEEECCH
Confidence 3468899999763211 12222355566778999999763
No 445
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=26.91 E-value=2.6e+02 Score=29.19 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=52.0
Q ss_pred EeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEEeCCCCCCCchhHHHH
Q 007533 301 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKIL 380 (599)
Q Consensus 301 VGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIlVPGGfG~rg~eg~i~ 380 (599)
.|||. +..-+.++++.+|.++. .|-++-++...-.. ..+|+.+..-+--++|+-.|-+..+..+.
T Consensus 23 Tgky~----s~~~~~~av~asg~~iv-TvAlRR~~~~~~~~----------~~~l~~l~~~~~~~LPNTaGc~taeEAv~ 87 (262)
T COG2022 23 TGKYP----SPAVLAEAVRASGSEIV-TVALRRVNATRPGG----------DGILDLLIPLGVTLLPNTAGCRTAEEAVR 87 (262)
T ss_pred cCCCC----CHHHHHHHHHhcCCceE-EEEEEeecccCCCc----------chHHHHhhhcCcEeCCCccccCCHHHHHH
Confidence 46777 56778899999999873 45666665321111 12566676767779999889998888888
Q ss_pred HHHHHHH
Q 007533 381 AAKYARE 387 (599)
Q Consensus 381 aik~are 387 (599)
.++-|||
T Consensus 88 tArlARE 94 (262)
T COG2022 88 TARLARE 94 (262)
T ss_pred HHHHHHH
Confidence 8888887
No 446
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.89 E-value=74 Score=32.51 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.3
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~-s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++||||-= ||||+.++ +.|-..|++|.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA-----~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIA-----KQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHH-----HHHHhCCCEEEEe
Confidence 7899999986 69998765 4566789988653
No 447
>PRK06720 hypothetical protein; Provisional
Probab=26.82 E-value=73 Score=30.72 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=21.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++|||| -+|||..+.. .|...|++|.+.
T Consensus 17 k~~lVTGa-~~GIG~aia~-----~l~~~G~~V~l~ 46 (169)
T PRK06720 17 KVAIVTGG-GIGIGRNTAL-----LLAKQGAKVIVT 46 (169)
T ss_pred CEEEEecC-CChHHHHHHH-----HHHHCCCEEEEE
Confidence 68999999 4688887654 355678776644
No 448
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=26.82 E-value=2e+02 Score=28.18 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=20.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+...+ . ..++.+.+.++|+..+
T Consensus 54 ~~~dgiii~~~~~~--~----~~l~~~~~~~ipvV~~ 84 (267)
T cd06283 54 YQVDGLIVNPTGNN--K----ELYQRLAKNGKPVVLV 84 (267)
T ss_pred cCcCEEEEeCCCCC--h----HHHHHHhcCCCCEEEE
Confidence 47999999764221 1 2356677788887665
No 449
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=26.70 E-value=73 Score=33.52 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=10.3
Q ss_pred CCCEEEeCCCCCCCc
Q 007533 360 GADGILVPGGFGNRG 374 (599)
Q Consensus 360 ~~DGIlVPGGfG~rg 374 (599)
.+|.+|=.-|||..+
T Consensus 84 ~IdvLVNNAG~g~~g 98 (265)
T COG0300 84 PIDVLVNNAGFGTFG 98 (265)
T ss_pred cccEEEECCCcCCcc
Confidence 467766666887765
No 450
>PRK06523 short chain dehydrogenase; Provisional
Probab=26.70 E-value=83 Score=31.28 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=25.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
|.|+||||- +|||+ ++...|..+|++|..+-.+
T Consensus 10 k~vlItGas-~gIG~-----~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 10 KRALVTGGT-KGIGA-----ATVARLLEAGARVVTTARS 42 (260)
T ss_pred CEEEEECCC-CchhH-----HHHHHHHHCCCEEEEEeCC
Confidence 689999984 57775 5666777889999877554
No 451
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=26.62 E-value=4.3e+02 Score=27.78 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=23.7
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPA 336 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s 336 (599)
=+|.+|| +. .-+...|.++-+++|+.. +.=.|+.-
T Consensus 65 g~ILfVg--TK-~~a~~~V~~~A~r~g~~y---V~~RwLgG 99 (252)
T COG0052 65 GKILFVG--TK-KQAQEPVKEFAERTGAYY---VNGRWLGG 99 (252)
T ss_pred CEEEEEe--ch-HHHHHHHHHHHHHhCCce---ecCcccCc
Confidence 4799998 22 236667888888888775 34468754
No 452
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=26.61 E-value=1.2e+02 Score=28.88 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=38.3
Q ss_pred EEEeCCCCCCCch---hHH-HHHHHHHHHcCCCEEEEehh--------HHHHHHHhccccccccCCCcccc
Q 007533 363 GILVPGGFGNRGV---QGK-ILAAKYAREHRIPYLGICLG--------MQVAVIEFARSVLNLRDANSTEF 421 (599)
Q Consensus 363 GIlVPGGfG~rg~---eg~-i~aik~are~~iP~LGICLG--------mQll~iefgr~Vlgl~dA~S~Ef 421 (599)
-||++=|....+. ... ..+++.+++.+++++.|+.| |+-++-.-|++.+.+.++++.+|
T Consensus 102 ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~ 172 (178)
T cd01451 102 IVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAI 172 (178)
T ss_pred EEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHH
Confidence 5666767544332 222 56678888999999999987 46666666666666666555443
No 453
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=26.58 E-value=70 Score=31.93 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++|||| -+|||+ ++.+.|...|++|..+
T Consensus 11 k~~lItG~-~~gIG~-----a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 11 KVAVVTGC-DTGLGQ-----GMALGLAEAGCDIVGI 40 (253)
T ss_pred CEEEEECC-CchHHH-----HHHHHHHHCCCEEEEe
Confidence 78999998 467776 5667777889988643
No 454
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=26.57 E-value=2.8e+02 Score=28.19 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=23.3
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 396 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGIC 396 (599)
.++|||++.+- + .+.....++.+++.++|+.-+-
T Consensus 55 ~~vdgiIi~~~--~--~~~~~~~l~~~~~~giPvV~~~ 88 (302)
T TIGR02637 55 QKVDAIAISAN--D--PDALVPALKKAMKRGIKVVTWD 88 (302)
T ss_pred cCCCEEEEeCC--C--hHHHHHHHHHHHHCCCEEEEeC
Confidence 68999999762 1 2333456777888899976543
No 455
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=26.46 E-value=6.6e+02 Score=25.11 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=29.6
Q ss_pred EEEEEeCCccCC-cchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 007533 2 KYVLVTGGVVSG-LGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (599)
Q Consensus 2 k~i~vtggv~s~-~gkgi~~~s~g~ll~~~g~~v~~~k~dpyl 43 (599)
|.+|||...... -|=+..+..+..-|+.+|++|+++=.++..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 456777655431 345667778889999999999998655543
No 456
>PLN02913 dihydrofolate synthetase
Probab=26.31 E-value=46 Score=37.99 Aligned_cols=32 Identities=44% Similarity=0.610 Sum_probs=26.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.|=|+|= =|||-|++-|..+|++.||||-..
T Consensus 76 ~vIhVaGT----NGKGSt~a~l~~iL~~aG~~vG~f 107 (510)
T PLN02913 76 KAVHVAGT----KGKGSTAAFLSNILRAQGYSVGCY 107 (510)
T ss_pred cEEEEeCC----CchHHHHHHHHHHHHhcCCCeEEE
Confidence 45666663 599999999999999999999764
No 457
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.27 E-value=77 Score=33.86 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=38.1
Q ss_pred chhhhHHHHhcc--CCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE-------------ehhHHHHHHHhcccccc
Q 007533 348 PDAYKAAWKLLK--GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI-------------CLGMQVAVIEFARSVLN 412 (599)
Q Consensus 348 p~~y~~a~~~L~--~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI-------------CLGmQll~iefgr~Vlg 412 (599)
++.+..+.+.|+ +.|++++-||.|+- .+...+ +.+.++|+.|| |+|++-++-.....+-.
T Consensus 77 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~--~~a~~L---~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~ 151 (301)
T TIGR02482 77 EEGRQKAVENLKKLGIEGLVVIGGDGSY--TGAQKL---YEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDK 151 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHH--HHHHHH---HHhhCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHH
Confidence 344556666664 89999999998752 222222 22246777775 99999986555544444
Q ss_pred c
Q 007533 413 L 413 (599)
Q Consensus 413 l 413 (599)
+
T Consensus 152 i 152 (301)
T TIGR02482 152 I 152 (301)
T ss_pred H
Confidence 4
No 458
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=25.92 E-value=1.2e+02 Score=29.74 Aligned_cols=105 Identities=21% Similarity=0.178 Sum_probs=64.4
Q ss_pred cCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCc--EEEEeeCccccccccchHHHHHHHhhhHcCCCCEEEEee
Q 007533 103 KGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVD--VCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180 (599)
Q Consensus 103 ~g~ylg~tvqviphit~~i~~~i~~~~~~p~d~~~~~~d--v~i~e~ggtvgdies~pf~ea~rq~~~~~g~~n~~~ihv 180 (599)
+|.|-|...++=..+-+++.++|++..+ +.| +++-.+||-=|===+...+|.+|++ +. .+ +-.
T Consensus 54 ~G~~~~~~~~~g~~~~~~~~~~ir~~le--------~~d~~~i~~slgGGTGsG~~~~i~~~~~~~----~~--~~-~~~ 118 (192)
T smart00864 54 RGLGAGADPEVGREAAEESLDEIREELE--------GADGVFITAGMGGGTGTGAAPVIAEIAKEY----GI--LT-VAV 118 (192)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHhc--------CCCEEEEeccCCCCccccHHHHHHHHHHHc----CC--cE-EEE
Confidence 6888888888888888999999998864 235 4555788755544444556777743 32 22 455
Q ss_pred eeeeeecCCCccccCCchhhhhhhhcCCCcccEEEEecCCCCChhh
Q 007533 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNV 226 (599)
Q Consensus 181 ~~vp~~~~~~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~ 226 (599)
...|.. .|-.++| +.++..|+.+-=..|.+++=+...|....
T Consensus 119 ~v~P~~---~e~~~~~-~Na~~~l~~l~~~~d~~i~~dN~~l~~~~ 160 (192)
T smart00864 119 VTKPFV---FEGVVRP-YNAELGLEELREHVDSLIVIDNDALLDIC 160 (192)
T ss_pred EEEeEe---ecchhHH-HHHHHHHHHHHHhCCEEEEEEhHHHHHHH
Confidence 666733 3333323 34444444444467888887666555443
No 459
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=25.90 E-value=3.5e+02 Score=26.79 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=21.1
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 395 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGI 395 (599)
.++|||++.+...+.... ....++.+.+.++|+.-+
T Consensus 54 ~~vdgii~~~~~~~~~~~-~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 54 QGIDGLIIEPTKSALPNP-NIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred cCCCEEEEeccccccccc-cHHHHHHHHHCCCCEEEE
Confidence 589999987653322110 113456667778886543
No 460
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=25.76 E-value=86 Score=31.36 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=23.7
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
+++||||- +|||+.++- .+...++..|++|...-
T Consensus 2 ~vlItGas-~GIG~~~a~-~la~~~~~~g~~V~~~~ 35 (256)
T TIGR01500 2 VCLVTGAS-RGFGRTIAQ-ELAKCLKSPGSVLVLSA 35 (256)
T ss_pred EEEEecCC-CchHHHHHH-HHHHhhccCCcEEEEEE
Confidence 68999986 999987654 23333445799887653
No 461
>PRK12377 putative replication protein; Provisional
Probab=25.75 E-value=62 Score=33.50 Aligned_cols=59 Identities=27% Similarity=0.419 Sum_probs=45.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc-----CCCC-----CCCccccceEEEccC
Q 007533 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN-----TDAG-----TMSPFEHGEVFVLDD 63 (599)
Q Consensus 3 ~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpyln-----~d~g-----tmsp~~hgevfv~~d 63 (599)
-++++|. +|.||=-+|++|+..|...|++|..+...=.+. .+.+ .++.+..-+|-|+||
T Consensus 103 ~l~l~G~--~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDD 171 (248)
T PRK12377 103 NFVFSGK--PGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDE 171 (248)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcC
Confidence 4778886 499999999999999999999998887644333 1222 356667778888887
No 462
>PRK07677 short chain dehydrogenase; Provisional
Probab=25.41 E-value=82 Score=31.28 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k 38 (599)
|.++|||| -+|||+.+ ...|.++|.+|...=
T Consensus 2 k~~lItG~-s~giG~~i-----a~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGG-SSGMGKAM-----AKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCC-CChHHHHH-----HHHHHHCCCEEEEEe
Confidence 77999999 67777654 556667899887653
No 463
>PRK09186 flagellin modification protein A; Provisional
Probab=25.31 E-value=83 Score=31.07 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.|+||||- +|||+.+ ...|..+|++|...
T Consensus 5 k~vlItGas-~giG~~~-----a~~l~~~g~~v~~~ 34 (256)
T PRK09186 5 KTILITGAG-GLIGSAL-----VKAILEAGGIVIAA 34 (256)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHCCCEEEEE
Confidence 789999984 6777654 55667789988766
No 464
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=25.24 E-value=96 Score=30.32 Aligned_cols=30 Identities=40% Similarity=0.677 Sum_probs=22.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
||.++|||| -++||.. +.+.|-++|++|..
T Consensus 1 ~~~~lItGa-~g~iG~~-----l~~~l~~~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGG-SRGIGRA-----TALLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEeCC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 789999999 4667765 45556678988865
No 465
>PRK06217 hypothetical protein; Validated
Probab=25.19 E-value=72 Score=30.71 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll 27 (599)
|+-|+|+| .||-||...|..|+..|
T Consensus 1 ~~~I~i~G--~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 1 MMRIHITG--ASGSGTTTLGAALAERL 25 (183)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHc
Confidence 66799999 68999999999888765
No 466
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=25.07 E-value=2.6e+02 Score=27.69 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=57.0
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhc--cCC-CEEEeCC-CCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGA-DGILVPG-GFG 371 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~-DGIlVPG-GfG 371 (599)
+||+|-.|...+ +-+..+.+.|+..|+++.- +-+.+.+ . ..-|+.-..+.+.+ ..+ -||++.| |-|
T Consensus 1 MkI~igsDhaG~-~lK~~l~~~L~~~G~eV~D------~G~~~~~--~-~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 70 (171)
T PRK12615 1 MKIAIGCDHIVT-NEKMAVSDFLKSKGYDVID------CGTYDHT--R-THYPIFGKKVGEAVVNGQADLGVCICGTGVG 70 (171)
T ss_pred CEEEEEeCchhH-HHHHHHHHHHHHCCCEEEE------cCCCCCC--C-CChHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 467776555433 2345789999999987621 1221111 1 12233222233333 233 4899988 433
Q ss_pred C-------Cch----hHHHHHHHHHHH-cCCCEEEEehhHHHHHHHhccccc
Q 007533 372 N-------RGV----QGKILAAKYARE-HRIPYLGICLGMQVAVIEFARSVL 411 (599)
Q Consensus 372 ~-------rg~----eg~i~aik~are-~~iP~LGICLGmQll~iefgr~Vl 411 (599)
- +|+ -.-...++.+|+ |+--+| |+|-.++..+.+..++
T Consensus 71 ~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL--~lG~r~ig~~~a~~Iv 120 (171)
T PRK12615 71 INNAVNKVPGIRSALVRDMTTALYAKEELNANVI--GFGGKITGELLMCDII 120 (171)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEE--EEChhhcCHHHHHHHH
Confidence 2 222 112334555655 567777 9999999888887764
No 467
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=25.03 E-value=9.1e+02 Score=26.23 Aligned_cols=108 Identities=20% Similarity=0.161 Sum_probs=56.7
Q ss_pred CccccCCchhhhhhhhcCCCcccEEEEecCCCCChhhhhccccCCCCCCCCeeeeCCCCCccchhHHHHHHHHHHHHHcC
Q 007533 190 GEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRKAHEAIFKVLN 269 (599)
Q Consensus 190 ~e~ktkptq~sv~~Lrs~Gi~pd~iv~R~~~~l~~~~~~Kislfc~v~~~~Vi~~~dv~tiy~vPl~L~g~~~~i~~~l~ 269 (599)
+-.|--+.+-+++-|.+. .|+|++|... ....++++-.+.|| ||+.-|= +.+|=...|--++. |.++++
T Consensus 83 ~~~kgEsl~Dtarvls~y---~D~IviR~~~---~~~~~~~a~~~~vP---VINa~~g-~~~HPtQaLaDl~T-i~e~~~ 151 (338)
T PRK08192 83 SLSKGESLYDTARVLSTY---SDVIAMRHPD---AGSVKEFAEGSRVP---VINGGDG-SNEHPTQALLDLFT-IQKELA 151 (338)
T ss_pred cCCCCCCHHHHHHHHHHc---CCEEEEeCCc---hhHHHHHHHhCCCC---EEECCCC-CCCCcHHHHHHHHH-HHHHhh
Confidence 333444566666666444 8999999753 34556667777776 7777551 34444333311111 111110
Q ss_pred CCCCCCchhhHHHHHHHhhhcCCCCceEEEEEeecCCCcchHHHHHHHHHHc-CCccee
Q 007533 270 LQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRK 327 (599)
Q Consensus 270 l~~~~~~~~l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~SIi~AL~ha-G~~~~v 327 (599)
. ....-+.+||++||+.. ....-.|.+.+|... |+.+.+
T Consensus 152 -----------------~-~g~~l~g~kia~vGD~~-~~rv~~Sl~~~l~~~~g~~v~~ 191 (338)
T PRK08192 152 -----------------H-AGRGIDGMHIAMVGDLK-FGRTVHSLSRLLCMYKNVSFTL 191 (338)
T ss_pred -----------------c-cCCCcCCCEEEEECcCC-CCchHHHHHHHHHHhcCCEEEE
Confidence 0 00012358999999763 122456777666533 665543
No 468
>PRK07985 oxidoreductase; Provisional
Probab=24.99 E-value=82 Score=32.60 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|.++||||- +|||+. +.+.|.++|++|.+
T Consensus 50 k~vlITGas-~gIG~a-----ia~~L~~~G~~Vi~ 78 (294)
T PRK07985 50 RKALVTGGD-SGIGRA-----AAIAYAREGADVAI 78 (294)
T ss_pred CEEEEECCC-CcHHHH-----HHHHHHHCCCEEEE
Confidence 689999985 788864 55667778998765
No 469
>PRK06182 short chain dehydrogenase; Validated
Probab=24.99 E-value=84 Score=31.69 Aligned_cols=33 Identities=39% Similarity=0.415 Sum_probs=24.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
+|.|+|||| -||||+.++ +.|..+|++|..+--
T Consensus 3 ~k~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~r 35 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATA-----RRLAAQGYTVYGAAR 35 (273)
T ss_pred CCEEEEECC-CChHHHHHH-----HHHHHCCCEEEEEeC
Confidence 378999997 578887654 556678999886533
No 470
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=24.96 E-value=2e+02 Score=27.92 Aligned_cols=105 Identities=30% Similarity=0.439 Sum_probs=56.6
Q ss_pred eEEEEEeecCCCcchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHH-hcc-CCC-EEEeCC-CCC
Q 007533 296 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLK-GAD-GILVPG-GFG 371 (599)
Q Consensus 296 v~IaiVGkY~~l~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~-~~D-GIlVPG-GfG 371 (599)
+||+|-.|.... .-...|.+.|+..|+++ ++.-....+....-|+.-..+.+ .+. .+| ||++.| |-|
T Consensus 1 MkIaig~Dhag~-~lK~~I~~~Lk~~g~~v--------~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG 71 (151)
T COG0698 1 MKIAIGSDHAGY-ELKEIIIDHLKSKGYEV--------IDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIG 71 (151)
T ss_pred CcEEEEcCcccH-HHHHHHHHHHHHCCCEE--------EeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChh
Confidence 578887665533 23557899999998876 22111111110112222222222 233 455 788888 544
Q ss_pred C-------Cch----hHHHHHHHHHHHcC-CCEEEEehhHHHHHHHhccccc
Q 007533 372 N-------RGV----QGKILAAKYAREHR-IPYLGICLGMQVAVIEFARSVL 411 (599)
Q Consensus 372 ~-------rg~----eg~i~aik~are~~-iP~LGICLGmQll~iefgr~Vl 411 (599)
. +|+ -.-...++.+|++| -- =||+|..+...+.|..++
T Consensus 72 ~~iaANKv~GiraAl~~D~~sA~~ar~hNnaN--vl~~G~riig~~lA~~iv 121 (151)
T COG0698 72 MSIAANKVPGIRAALVSDPTSAKLAREHNNAN--VLCLGARIIGPELAEDIV 121 (151)
T ss_pred HHHHhhccCCeEEEEecCHHHHHHHHhcCCCc--EEEechhhccHHHHHHHH
Confidence 3 222 11234456677653 33 368899999888887654
No 471
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=24.94 E-value=91 Score=32.24 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=23.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRV 34 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~-~g~~v 34 (599)
|+.|-+|||.-|| | |++..+|++ .|+.|
T Consensus 1 M~iIGlTGgIgSG--K----StVs~~L~~~~G~~v 29 (244)
T PTZ00451 1 MILIGLTGGIACG--K----STVSRILREEHHIEV 29 (244)
T ss_pred CeEEEEECCCCCC--H----HHHHHHHHHHcCCeE
Confidence 7889999998774 6 788899998 59877
No 472
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=24.86 E-value=77 Score=33.07 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|-|+||||- +|||.-+ .+.|..+|++|.+.
T Consensus 7 k~vlVTGas-~gIG~~~-----a~~L~~~G~~V~~~ 36 (322)
T PRK07453 7 GTVIITGAS-SGVGLYA-----AKALAKRGWHVIMA 36 (322)
T ss_pred CEEEEEcCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 779999995 7888754 45556678877654
No 473
>PRK07063 short chain dehydrogenase; Provisional
Probab=24.85 E-value=84 Score=31.31 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|-++||||- +|||+. +.+.|-++|++|...
T Consensus 8 k~vlVtGas-~gIG~~-----~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 8 KVALVTGAA-QGIGAA-----IARAFAREGAAVALA 37 (260)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 888865 446677889988754
No 474
>PRK02496 adk adenylate kinase; Provisional
Probab=24.85 E-value=83 Score=30.08 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll 27 (599)
|+-|+|+|+ +|-||+..|.-|...+
T Consensus 1 ~~~i~i~G~--pGsGKst~a~~la~~~ 25 (184)
T PRK02496 1 MTRLIFLGP--PGAGKGTQAVVLAEHL 25 (184)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHh
Confidence 566899998 8999988888877644
No 475
>PRK05599 hypothetical protein; Provisional
Probab=24.82 E-value=66 Score=32.16 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=21.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++|||| -+|||+.++.. |. .|.+|.+.
T Consensus 1 ~~vlItGa-s~GIG~aia~~-----l~-~g~~Vil~ 29 (246)
T PRK05599 1 MSILILGG-TSDIAGEIATL-----LC-HGEDVVLA 29 (246)
T ss_pred CeEEEEeC-ccHHHHHHHHH-----Hh-CCCEEEEE
Confidence 46899999 59999988764 33 38777543
No 476
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=24.71 E-value=1e+02 Score=33.52 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=33.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~-~~g~~v~~~k~dpyln 44 (599)
++++| ++|-||=..+..+...|. .+|++|..+-+|=++.
T Consensus 2 ~~l~G--l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCG--LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEEC--CCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 45666 689999999999998886 7999999999998874
No 477
>PRK07478 short chain dehydrogenase; Provisional
Probab=24.68 E-value=84 Score=31.20 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++||||- +|||+.++ +.|-.+|++|...
T Consensus 7 k~~lItGas-~giG~~ia-----~~l~~~G~~v~~~ 36 (254)
T PRK07478 7 KVAIITGAS-SGIGRAAA-----KLFAREGAKVVVG 36 (254)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 689999986 78887654 4566788887654
No 478
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=24.68 E-value=97 Score=30.33 Aligned_cols=28 Identities=39% Similarity=0.555 Sum_probs=20.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v 34 (599)
|+-|.||||.-| || |+++.+|+++|+.|
T Consensus 2 ~~~i~ltG~~gs--GK----st~~~~l~~~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGIGS--GK----STVANLFAELGAPV 29 (194)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHcCCEE
Confidence 578999999655 67 46666777778653
No 479
>PRK07023 short chain dehydrogenase; Provisional
Probab=24.65 E-value=1e+02 Score=30.43 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=22.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|+-|+|||| -+|||+- +.+.|.++|++|..+
T Consensus 1 ~~~vlItGa-sggiG~~-----ia~~l~~~G~~v~~~ 31 (243)
T PRK07023 1 AVRAIVTGH-SRGLGAA-----LAEQLLQPGIAVLGV 31 (243)
T ss_pred CceEEEecC-CcchHHH-----HHHHHHhCCCEEEEE
Confidence 567899998 5677764 445566789998776
No 480
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.60 E-value=94 Score=31.12 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=23.8
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv-~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|-|+||||- .+|||+. +.+.|.++|.+|...
T Consensus 7 k~vlVtGas~~~giG~~-----~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAA-----ICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHH-----HHHHHHHCCCeEEEE
Confidence 789999998 4899965 456677788887653
No 481
>PLN00198 anthocyanidin reductase; Provisional
Probab=24.53 E-value=1.1e+02 Score=31.89 Aligned_cols=35 Identities=37% Similarity=0.372 Sum_probs=26.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
+|.|+||||- |-+.+.+-..|..+|++|..+-.|+
T Consensus 9 ~~~vlItG~~------GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 9 KKTACVIGGT------GFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCeEEEECCc------hHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3679999985 5666777777888999997765554
No 482
>PRK06761 hypothetical protein; Provisional
Probab=24.50 E-value=82 Score=33.36 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=29.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
+.|+|+|- +|-||-.++..+...|..+|++|..
T Consensus 4 ~lIvI~G~--~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGL--PGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHhcCcCceEEEE
Confidence 67899985 8999999999999999999998875
No 483
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.45 E-value=5.9e+02 Score=24.27 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=49.2
Q ss_pred hHHHHHHHhhhcCCCCceEEEEEeecCCCcchHH---HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHH
Q 007533 279 LKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYL---SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW 355 (599)
Q Consensus 279 l~~W~~l~~~~~~~~~~v~IaiVGkY~~l~DaY~---SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~ 355 (599)
.+.|.++++.+.+. -+|-++| .+. ++. .....|...|..+.. +.. ...
T Consensus 20 ~~~l~~~~~~i~~a---~~I~i~G-~G~---S~~~A~~~~~~l~~~g~~~~~------~~~-~~~--------------- 70 (179)
T cd05005 20 EEELDKLISAILNA---KRIFVYG-AGR---SGLVAKAFAMRLMHLGLNVYV------VGE-TTT--------------- 70 (179)
T ss_pred HHHHHHHHHHHHhC---CeEEEEe-cCh---hHHHHHHHHHHHHhCCCeEEE------eCC-CCC---------------
Confidence 34567777777654 3688887 332 222 223345555554432 211 110
Q ss_pred HhccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEeh
Q 007533 356 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 397 (599)
Q Consensus 356 ~~L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGICL 397 (599)
..+..=|-+|+-.-.|. ....+.+++.|++++.|+++|+-
T Consensus 71 ~~~~~~D~vI~iS~sG~--t~~~i~~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 71 PAIGPGDLLIAISGSGE--TSSVVNAAEKAKKAGAKVVLITS 110 (179)
T ss_pred CCCCCCCEEEEEcCCCC--cHHHHHHHHHHHHCCCeEEEEEC
Confidence 12344455554432232 34568899999999999999974
No 484
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=24.38 E-value=2.7e+02 Score=31.23 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=39.8
Q ss_pred CCCcEEEEe--eCccccccc-cchHHHHHHHhhhHcCCCCEEEEeeeeeeeecCCCcccc---CCchhhhhhhhcCCCcc
Q 007533 138 GPVDVCVIE--LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT---KPTQHSVRGLRGQGLTP 211 (599)
Q Consensus 138 ~~~dv~i~e--~ggtvgdie-s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~kt---kptq~sv~~Lrs~Gi~p 211 (599)
.+.=-+|+| +-|.-|.+. +.-|++++|++..+.| +++|- .|..| ..=.-. ..+..|+.|
T Consensus 220 ~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~g---illI~----------DEV~TG~GRtG~~f--a~~~~gv~P 284 (453)
T PRK06943 220 GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYG---VHLIA----------DEIAVGCGRTGTFF--ACEQAGVWP 284 (453)
T ss_pred CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcC---CEEEe----------echhhCCCCCcchh--HHHhCCCCC
Confidence 345678999 456656543 5669999999999976 55542 33332 110011 112369999
Q ss_pred cEEEE
Q 007533 212 NILAC 216 (599)
Q Consensus 212 d~iv~ 216 (599)
|++++
T Consensus 285 Divt~ 289 (453)
T PRK06943 285 DFLCL 289 (453)
T ss_pred CeEee
Confidence 99887
No 485
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=24.35 E-value=75 Score=29.47 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=26.7
Q ss_pred ccCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEE
Q 007533 358 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 393 (599)
Q Consensus 358 L~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~L 393 (599)
|+.+|++|++-=+|...-.|+..-++.|.+.++|++
T Consensus 77 L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~ 112 (116)
T PF09152_consen 77 LDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVF 112 (116)
T ss_dssp HHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEE
T ss_pred HHhcceeEEecCCCccccccHHHHHHHHHHcCCeEE
Confidence 678999999998888777898899999999999986
No 486
>PLN02778 3,5-epimerase/4-reductase
Probab=24.34 E-value=95 Score=32.41 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=24.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~ 36 (599)
|+|||| -|-+-+.+-+.|.++|++|+.
T Consensus 12 iLVtG~------tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 12 FLIYGK------TGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred EEEECC------CCHHHHHHHHHHHhCCCEEEE
Confidence 899996 599999999999999999874
No 487
>PRK07062 short chain dehydrogenase; Provisional
Probab=24.33 E-value=85 Score=31.37 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~d 40 (599)
|.++||||- +|||+- +.+.|.++|.+|...-.+
T Consensus 9 k~~lItGas-~giG~~-----ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGS-SGIGLA-----TVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCeEEEEeCC
Confidence 679999975 778864 556667889998776444
No 488
>PLN02780 ketoreductase/ oxidoreductase
Probab=24.27 E-value=71 Score=33.80 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~ 39 (599)
|.++|||| -||||+.++ ..|..+|++|..+=.
T Consensus 54 ~~~lITGA-s~GIG~alA-----~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVTGP-TDGIGKGFA-----FQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCCEEEEEC
Confidence 68999998 589998654 567778999877643
No 489
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.14 E-value=4e+02 Score=26.77 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=21.4
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 396 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGIC 396 (599)
.++|||++.+.. .. .....++.+++.++|+.-+-
T Consensus 55 ~~vdgiil~~~~--~~--~~~~~~~~~~~~~iPvV~~d 88 (280)
T cd06315 55 LKPDGIVLGGVD--AA--ELQAELELAQKAGIPVVGWH 88 (280)
T ss_pred cCCCEEEEcCCC--HH--HHHHHHHHHHHCCCCEEEec
Confidence 689999998621 11 11234566667789987653
No 490
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=24.04 E-value=3.6e+02 Score=28.23 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHH--hccCCCEEEeCC-CCCCCchhHHHHHHHHHHHcC
Q 007533 313 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK--LLKGADGILVPG-GFGNRGVQGKILAAKYAREHR 389 (599)
Q Consensus 313 SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~--~L~~~DGIlVPG-GfG~rg~eg~i~aik~are~~ 389 (599)
.+++.-+..+..+.+--++.--.+..+.... .+. .++. ....+|||+++| ..|.+....++..+|.+..
T Consensus 129 e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~----~~~--~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-- 200 (254)
T PF03437_consen 129 ELLRYRKRLGADVKILADVHVKHSSPLATRD----LEE--AAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP-- 200 (254)
T ss_pred HHHHHHHHcCCCeEEEeeechhhcccCCCCC----HHH--HHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC--
Confidence 4566656666665443333333333332211 111 1222 246799999999 4677666566666666554
Q ss_pred CCEEEEehh
Q 007533 390 IPYLGICLG 398 (599)
Q Consensus 390 iP~LGICLG 398 (599)
+|+| +--|
T Consensus 201 ~PVl-vGSG 208 (254)
T PF03437_consen 201 VPVL-VGSG 208 (254)
T ss_pred CCEE-EecC
Confidence 8987 4434
No 491
>PRK09242 tropinone reductase; Provisional
Probab=24.03 E-value=84 Score=31.26 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 007533 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (599)
Q Consensus 2 k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~ 37 (599)
|.++|||| -+|||+.+ .+.|.++|++|.++
T Consensus 10 k~~lItGa-~~gIG~~~-----a~~l~~~G~~v~~~ 39 (257)
T PRK09242 10 QTALITGA-SKGIGLAI-----AREFLGLGADVLIV 39 (257)
T ss_pred CEEEEeCC-CchHHHHH-----HHHHHHcCCEEEEE
Confidence 78999988 57888654 45566788877665
No 492
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=23.97 E-value=1.4e+02 Score=26.65 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=30.4
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 007533 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (599)
Q Consensus 4 i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dpy 42 (599)
++|+|. +|.||-.++..+...+...|.+|..+-.+..
T Consensus 2 ~~i~G~--~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGP--TGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCC--CCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 577887 8999999999999999888888876655444
No 493
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=23.94 E-value=1.7e+02 Score=29.34 Aligned_cols=69 Identities=20% Similarity=0.144 Sum_probs=43.3
Q ss_pred chHhhHHHHhhhhcCCCCCC--eeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc--------------cc
Q 007533 90 TGKIYQSVIDKERKGDYLGK--TVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI--------------GD 153 (599)
Q Consensus 90 tgkiy~~vi~ker~g~ylg~--tvqviphit~~i~~~i~~~~~~p~d~~~~~~dv~i~e~ggtv--------------gd 153 (599)
+|..-...+++ .| +.|- ...+||.=-++|++.|++... ..+.|++|+= |||- +|
T Consensus 24 ng~~L~~~L~~--~G-~~g~~v~~~iVpDd~~~I~~aL~~a~~------~~~~DlIITT-GGtg~g~rDvTpeAv~~l~~ 93 (193)
T PRK09417 24 GIPALEEWLAS--AL-TSPFEIETRLIPDEQDLIEQTLIELVD------EMGCDLVLTT-GGTGPARRDVTPEATLAVAD 93 (193)
T ss_pred hHHHHHHHHHH--cC-CCCceEEEEECCCCHHHHHHHHHHHhh------cCCCCEEEEC-CCCCCCCCCcHHHHHHHHhC
Confidence 45555555543 23 2232 227999999999999998862 3468988887 9884 33
Q ss_pred cccchHHHHHHHhhh
Q 007533 154 IESMPFIEALGQFSY 168 (599)
Q Consensus 154 ies~pf~ea~rq~~~ 168 (599)
-|=--|-||+|++.+
T Consensus 94 keipG~~e~~r~~s~ 108 (193)
T PRK09417 94 KEMPGFGEQMRQISL 108 (193)
T ss_pred CcCCcHHHHHHHHhc
Confidence 444445566665544
No 494
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.91 E-value=3.6e+02 Score=26.29 Aligned_cols=31 Identities=32% Similarity=0.345 Sum_probs=18.3
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEEEEe
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 396 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~LGIC 396 (599)
.++|||++.+... ... .. .+.++++|+..++
T Consensus 54 ~~vdgiii~~~~~--~~~----~~-~~~~~~ipvv~~~ 84 (267)
T cd06284 54 KQADGIILLDGSL--PPT----AL-TALAKLPPIVQAC 84 (267)
T ss_pred cCCCEEEEecCCC--CHH----HH-HHHhcCCCEEEEe
Confidence 4799999965321 111 12 2335689998764
No 495
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=23.86 E-value=1.2e+02 Score=35.60 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 007533 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (599)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~~s~g~ll~~~g~~v~~~k~dp 41 (599)
||.|=|+|= ||-||-....-|=..|+.+||||..||=|.
T Consensus 10 ~~vi~ivG~--s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAY--SGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcC--CCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 466667774 999999999999999999999999999754
No 496
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=23.84 E-value=7.9e+02 Score=25.10 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=45.6
Q ss_pred ceEEEEEeecCCC---------cchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccCCCEEE
Q 007533 295 PVRIAMVGKYTGL---------SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGIL 365 (599)
Q Consensus 295 ~v~IaiVGkY~~l---------~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIl 365 (599)
+.+|+++--.++. ...|..+.+.|+.. +.+.- ++ +... +.-.++|.+|
T Consensus 146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~------~~---l~~~-------------~IP~~~d~Lv 202 (271)
T PF09822_consen 146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEE------LN---LANE-------------EIPDDADVLV 202 (271)
T ss_pred CceEEEEccccccccccccccCcchHHHHHHHHHhc-Cceee------cC---Cccc-------------ccCCCCCEEE
Confidence 4678877656655 35788899999998 76532 11 2110 2347899999
Q ss_pred eCCCCCCCchhHHHHHHHHHHHcC
Q 007533 366 VPGGFGNRGVQGKILAAKYAREHR 389 (599)
Q Consensus 366 VPGGfG~rg~eg~i~aik~are~~ 389 (599)
|.| |-.+=.+....+++...+++
T Consensus 203 i~~-P~~~ls~~e~~~l~~yl~~G 225 (271)
T PF09822_consen 203 IAG-PKTDLSEEELYALDQYLMNG 225 (271)
T ss_pred EEC-CCCCCCHHHHHHHHHHHHcC
Confidence 988 44444566677777766654
No 497
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=23.83 E-value=8.6e+02 Score=25.51 Aligned_cols=131 Identities=21% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCeeeeCCCCCccchhHHHH-HHHHHHHHHcCCCC-----CCCchhhHHHHHHHhhhcCCCCceEEEEE---eecCC---
Q 007533 239 QNIITLYDVPNIWHIPLLLR-KAHEAIFKVLNLQG-----TTKEPLLKEWTSRAEICDGLHEPVRIAMV---GKYTG--- 306 (599)
Q Consensus 239 ~~Vi~~~dv~tiy~vPl~L~-g~~~~i~~~l~l~~-----~~~~~~l~~W~~l~~~~~~~~~~v~IaiV---GkY~~--- 306 (599)
+.++-.-+.+++-.||+.=. ..++++-++++|.. ...+.++ +| ++. .-+.|+.. ||-.-
T Consensus 57 ~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~inaHvGfvdE~~~-ek------lk~--~~vdvvsLDfvgDn~vIk~ 127 (275)
T COG1856 57 EGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINAHVGFVDESDL-EK------LKE--ELVDVVSLDFVGDNDVIKR 127 (275)
T ss_pred eeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEEEEeeeccHHHH-HH------HHH--hcCcEEEEeecCChHHHHH
Confidence 45666678999999997666 99999999977742 1112122 23 221 12445544 32111
Q ss_pred ---C---cchHHHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhcc--CCCEEEeCC-----C--CC
Q 007533 307 ---L---SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPG-----G--FG 371 (599)
Q Consensus 307 ---l---~DaY~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIlVPG-----G--fG 371 (599)
+ .+-|...++.|.+.|+++.-.+. .=++--.++-+ | +|.+.|. ..|++++-+ | |+
T Consensus 128 vy~l~ksv~dyl~~l~~L~e~~irvvpHit-iGL~~gki~~e--------~-kaIdiL~~~~~DalVl~vliPtpGtkm~ 197 (275)
T COG1856 128 VYKLPKSVEDYLRSLLLLKENGIRVVPHIT-IGLDFGKIHGE--------F-KAIDILVNYEPDALVLVVLIPTPGTKMG 197 (275)
T ss_pred HHcCCccHHHHHHHHHHHHHcCceeceeEE-EEeccCcccch--------H-HHHHHHhcCCCCeEEEEEEecCCchhcc
Confidence 1 23566778889999988743322 12222223211 1 1334554 678877633 2 22
Q ss_pred C---CchhHHHHHHHHHHHc
Q 007533 372 N---RGVQGKILAAKYAREH 388 (599)
Q Consensus 372 ~---rg~eg~i~aik~are~ 388 (599)
. +..+..+.+++|||+.
T Consensus 198 ~~~pp~~eE~i~v~~~AR~~ 217 (275)
T COG1856 198 NSPPPPVEEAIKVVKYARKK 217 (275)
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 2 2457889999999984
No 498
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=23.75 E-value=2.2e+02 Score=26.84 Aligned_cols=71 Identities=23% Similarity=0.206 Sum_probs=39.4
Q ss_pred cchHH-HHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHH-HHhcc--CCCEEEeCCCCCCCchhHHHHHHH
Q 007533 308 SDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA-WKLLK--GADGILVPGGFGNRGVQGKILAAK 383 (599)
Q Consensus 308 ~DaY~-SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a-~~~L~--~~DGIlVPGGfG~rg~eg~i~aik 383 (599)
.|+-. .+.+.|+..|+++... .+-+++ ++.-.++ .+.++ .+|-||.+||-|-...+-...+++
T Consensus 18 ~d~n~~~l~~~l~~~G~~v~~~----~~v~Dd---------~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~ 84 (152)
T cd00886 18 EDRSGPALVELLEEAGHEVVAY----EIVPDD---------KDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATR 84 (152)
T ss_pred ccchHHHHHHHHHHcCCeeeeE----EEcCCC---------HHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHH
Confidence 34433 4566699999875431 122222 2212221 12344 799999999866554444556777
Q ss_pred HHHHcCCC
Q 007533 384 YAREHRIP 391 (599)
Q Consensus 384 ~are~~iP 391 (599)
.+.+...|
T Consensus 85 ~~~~~~l~ 92 (152)
T cd00886 85 PLLDKELP 92 (152)
T ss_pred HHhCCcCc
Confidence 66665555
No 499
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=23.69 E-value=53 Score=32.33 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCCCCccccCCchhhhHHHHhccC-CCEEEeCCCCCCCchhHHHHHHHHHHHcCC
Q 007533 312 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG-ADGILVPGGFGNRGVQGKILAAKYAREHRI 390 (599)
Q Consensus 312 ~SIi~AL~haG~~~~v~v~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~-~DGIlVPGGfG~rg~eg~i~aik~are~~i 390 (599)
.-+.+.|+.+|..+.. ..+ |+ ++.+. -.....+...+ +|.||..||-|-..-+-..+|++...++.+
T Consensus 30 ~~l~~~L~~ag~~~~~-~~i--V~-D~~~~--------I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dKei 97 (169)
T COG0521 30 PLLVELLEEAGHNVAA-YTI--VP-DDKEQ--------IRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKEI 97 (169)
T ss_pred hHHHHHHHHcCCccce-EEE--eC-CCHHH--------HHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhccC
Confidence 4578889999988722 111 22 21110 00111122233 899999998665444446678888888888
Q ss_pred C
Q 007533 391 P 391 (599)
Q Consensus 391 P 391 (599)
|
T Consensus 98 p 98 (169)
T COG0521 98 P 98 (169)
T ss_pred C
Confidence 8
No 500
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=23.68 E-value=3.7e+02 Score=27.82 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=19.8
Q ss_pred cCCCEEEeCCCCCCCchhHHHHHHHHHHHcCCCEE
Q 007533 359 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 393 (599)
Q Consensus 359 ~~~DGIlVPGGfG~rg~eg~i~aik~are~~iP~L 393 (599)
.++||||+.+.... . ...++.+++.++|+.
T Consensus 119 ~~vdgiIi~~~~~~--~---~~~~~~l~~~~iPvV 148 (342)
T PRK10014 119 QGVDGVVIAGAAGS--S---DDLREMAEEKGIPVV 148 (342)
T ss_pred CCCCEEEEeCCCCC--c---HHHHHHHhhcCCCEE
Confidence 57999999874321 1 234566677788875
Done!