Query 007535
Match_columns 599
No_of_seqs 356 out of 2670
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wfu_A Probable insulin-like p 5.6 1.7E+02 0.0059 18.8 0.6 8 589-596 18-25 (26)
2 2lat_A Dolichyl-diphosphooligo 3.6 1.1E+03 0.039 16.2 3.7 28 562-590 7-34 (37)
3 4gc0_A D-xylose-proton symport 3.4 2.7E+03 0.094 20.4 23.7 51 272-322 133-186 (491)
4 2lht_A Cellophane-induced prot 4.1 2.9E+02 0.01 23.2 0.0 32 25-61 21-52 (122)
5 2knc_A Integrin alpha-IIB; tra 2.8 1.6E+03 0.056 16.6 4.2 17 561-577 13-29 (54)
6 3mp7_B Preprotein translocase 2.8 1.7E+03 0.057 16.8 4.2 25 561-585 31-55 (61)
7 3j1r_A Archaeal adhesion filam 2.7 1.1E+03 0.038 15.0 2.5 15 271-285 9-23 (26)
8 1rkl_A Dolichyl-diphosphooligo 2.7 1.5E+03 0.05 15.6 4.5 29 561-590 6-34 (36)
9 1ddb_A Protein (BID); apoptosi 2.6 6.4E+02 0.022 23.7 1.9 16 575-590 150-165 (195)
10 3h3g_B Parathyroid hormone-rel 2.5 7.3E+02 0.025 15.6 1.4 10 451-460 11-20 (24)
No 1
>2wfu_A Probable insulin-like peptide 5 A chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster}
Probab=5.59 E-value=1.7e+02 Score=18.82 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=3.4
Q ss_pred CCCCCCCc
Q 007535 589 PYCNSAPE 596 (599)
Q Consensus 589 ~~~~~~~~ 596 (599)
.||++.||
T Consensus 18 ~YC~~~~~ 25 (26)
T 2wfu_A 18 AYCDSXXX 25 (26)
T ss_dssp HTSCC---
T ss_pred Hhcccccc
Confidence 47777776
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=3.61 E-value=1.1e+03 Score=16.20 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhccCCC
Q 007535 562 KGSCGLIFGVGFATLCLTCTKLVCLHTPY 590 (599)
Q Consensus 562 ~~~~~~~~G~~lm~l~l~~~~~~~~~~~~ 590 (599)
...++..+|...|.+ .++.+|++...++
T Consensus 7 L~~lan~lG~~~~~L-IVlYH~v~~n~~~ 34 (37)
T 2lat_A 7 LAIFANMLGVSLFLL-VVLYHYVAVNNPK 34 (37)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCccc
Confidence 456788888877655 6677888766554
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=3.40 E-value=2.7e+03 Score=20.38 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHH---HHhhchhhhhccCCcchHHHHHHHHHHHHHHHHHHh
Q 007535 272 PFCTGFAAGCMIWMV---IAEVLPDAFKEASPTPVASAATISVAFMEALSTLFQ 322 (599)
Q Consensus 272 ~~lla~AAG~mlyva---~~eLLPea~~~~~~~~~~~~~l~G~~lm~~L~~ll~ 322 (599)
-++.|++.|....++ ..|..|+..+.........+...|..+...+.....
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 355677777654333 467777655543222334455666666666655554
No 4
>2lht_A Cellophane-induced protein 1; secreted repeat domain, cell adhesion; NMR {Venturia inaequalis}
Probab=4.13 E-value=2.9e+02 Score=23.19 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=22.3
Q ss_pred hhhhhhhccCccchhccccCCcCCcccccCCCccccc
Q 007535 25 GCVAAETEGGISQKIRAAPHKNVGRSVIDGTGAENEI 61 (599)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (599)
+|-.+-+.+.+|.+.--+|.++ .|.+|||.+-
T Consensus 21 fcrs~g~~e~~crkdv~acdkk-----~d~~gresac 52 (122)
T 2lht_A 21 FCRTAGSREKDCRKDVQACDKK-----YDDQGRETAC 52 (122)
Confidence 3445556667787777788888 6778887653
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=2.84 E-value=1.6e+03 Score=16.59 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHH
Q 007535 561 RKGSCGLIFGVGFATLC 577 (599)
Q Consensus 561 ~~~~~~~~~G~~lm~l~ 577 (599)
+....+++.|+++..+.
T Consensus 13 wiIi~svl~GLllL~li 29 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667778888776653
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=2.80 E-value=1.7e+03 Score=16.85 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhh
Q 007535 561 RKGSCGLIFGVGFATLCLTCTKLVC 585 (599)
Q Consensus 561 ~~~~~~~~~G~~lm~l~l~~~~~~~ 585 (599)
....-...+|+++|.+.-++.+++=
T Consensus 31 ~~iak~~~iG~~i~G~iGf~Ikli~ 55 (61)
T 3mp7_B 31 KRAAKITGLGIILIGLIGMLIRIVG 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688899999999888888763
No 7
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=2.70 E-value=1.1e+03 Score=14.97 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHH
Q 007535 271 LPFCTGFAAGCMIWM 285 (599)
Q Consensus 271 ~~~lla~AAG~mlyv 285 (599)
+-++.+.++++++|.
T Consensus 9 lLIviav~aaVllyl 23 (26)
T 3j1r_A 9 LLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455668888888886
No 8
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=2.65 E-value=1.5e+03 Score=15.57 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhhccCCC
Q 007535 561 RKGSCGLIFGVGFATLCLTCTKLVCLHTPY 590 (599)
Q Consensus 561 ~~~~~~~~~G~~lm~l~l~~~~~~~~~~~~ 590 (599)
....++..+|...|.+ .++-+|++...+.
T Consensus 6 qL~~lan~lG~~~~~L-IvlYH~v~~n~~~ 34 (36)
T 1rkl_A 6 QLNSLAITFGIVMMTL-IVIYHAVDSTMSP 34 (36)
T ss_dssp GGGHHHHHHHHHHHHH-HHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhccccC
Confidence 4567788899887755 6778888766553
No 9
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=2.57 E-value=6.4e+02 Score=23.72 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.4
Q ss_pred HHHHHHHhHhhccCCC
Q 007535 575 TLCLTCTKLVCLHTPY 590 (599)
Q Consensus 575 ~l~l~~~~~~~~~~~~ 590 (599)
.+.++++|=||-|||.
T Consensus 150 ~lamLLaKKVa~htPs 165 (195)
T 1ddb_A 150 IMTMLLAKKVASHAPS 165 (195)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhChH
Confidence 4567788999999883
No 10
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=2.47 E-value=7.3e+02 Score=15.59 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHhhhhHHH
Q 007535 451 VALHALAEGL 460 (599)
Q Consensus 451 i~lHn~pEGl 460 (599)
+.+||+.|++
T Consensus 11 ~wL~~ll~~v 20 (24)
T 3h3g_B 11 FFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Done!