Query 007535
Match_columns 599
No_of_seqs 356 out of 2670
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 04:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007535.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007535hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 3.5 3.8E+02 0.027 22.0 3.6 40 544-583 56-98 (144)
2 d2e74d2 f.23.12.1 (D:12-45) IS 2.3 6E+02 0.044 15.4 2.5 20 534-553 14-33 (34)
3 d2j5la1 g.61.1.1 (A:479-512) A 1.8 3.2E+02 0.023 16.8 0.6 9 590-598 11-19 (34)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 1.8 8.8E+02 0.064 17.6 3.5 17 579-595 46-62 (100)
5 d1xn7a_ a.4.5.62 (A:) Hypothet 1.7 4.1E+02 0.03 19.5 1.2 7 590-596 60-66 (78)
6 d1vf5c3 f.23.23.1 (C:250-286) 1.7 6.5E+02 0.047 15.8 2.0 16 111-126 6-21 (37)
7 d1luaa2 c.58.1.4 (A:2-97) Meth 1.6 2.2E+02 0.016 22.0 -0.7 11 588-598 31-41 (96)
8 d1ddba_ f.1.4.1 (A:) Proapopto 1.6 5.4E+02 0.04 21.9 1.9 16 575-590 150-165 (195)
9 d1mvja_ g.3.6.1 (A:) Conotoxin 1.5 3.7E+02 0.027 15.2 0.5 6 585-590 8-13 (26)
10 d1zoqc1 a.153.1.1 (C:2065-2111 1.5 3.4E+02 0.025 17.8 0.3 9 588-596 9-17 (47)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.50 E-value=3.8e+02 Score=22.02 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=23.2
Q ss_pred HH-HhHHhHHHhhhccCC--chHHHHHHHHHHHHHHHHHHHhH
Q 007535 544 LL-PSFGRIVKRAASLDT--RKGSCGLIFGVGFATLCLTCTKL 583 (599)
Q Consensus 544 ~y-v~~~ellPea~~~~~--~~~~~~~~~G~~lm~l~l~~~~~ 583 (599)
+| +++.+-.||...... ...+.+.++|+.+..++.++++.
T Consensus 56 lYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 56 LYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp HHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 888888898875533 33444455555555554444443
No 2
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.31 E-value=6e+02 Score=15.36 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=11.2
Q ss_pred HHHHHHHHhhHHHhHHhHHH
Q 007535 534 DHVMVFACGGLLPSFGRIVK 553 (599)
Q Consensus 534 ~~lla~aaG~~yv~~~ellP 553 (599)
+-+.+.+.|++|.+..-.+|
T Consensus 14 gt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 14 GTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHhhhhhHHhhcCC
Confidence 34455666667655554444
No 3
>d2j5la1 g.61.1.1 (A:479-512) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=1.83 E-value=3.2e+02 Score=16.77 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=5.5
Q ss_pred CCCCCCccc
Q 007535 590 YCNSAPEAV 598 (599)
Q Consensus 590 ~~~~~~~~~ 598 (599)
.||-.||-+
T Consensus 11 kCPCeP~~~ 19 (34)
T d2j5la1 11 KCPCDPEMV 19 (34)
T ss_dssp CCSSCCEEC
T ss_pred cCCCChhhh
Confidence 466666654
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=1.75 E-value=8.8e+02 Score=17.65 Aligned_cols=17 Identities=18% Similarity=-0.005 Sum_probs=6.2
Q ss_pred HHHhHhhccCCCCCCCC
Q 007535 579 TCTKLVCLHTPYCNSAP 595 (599)
Q Consensus 579 ~~~~~~~~~~~~~~~~~ 595 (599)
.+..+++++-..+|.-|
T Consensus 46 ~l~~~~~~~r~~~~~~~ 62 (100)
T d3dtub2 46 LILYAVWRFHEKRNKVP 62 (100)
T ss_dssp HHHHHHHHHBTTTCCSC
T ss_pred HHHHHhhhhhccCCCCC
Confidence 33333333333333333
No 5
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=1.73 E-value=4.1e+02 Score=19.48 Aligned_cols=7 Identities=57% Similarity=1.156 Sum_probs=3.4
Q ss_pred CCCCCCc
Q 007535 590 YCNSAPE 596 (599)
Q Consensus 590 ~~~~~~~ 596 (599)
+|.|-||
T Consensus 60 sCKsCPE 66 (78)
T d1xn7a_ 60 SCKSCPE 66 (78)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 4444444
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.69 E-value=6.5e+02 Score=15.78 Aligned_cols=16 Identities=25% Similarity=0.059 Sum_probs=9.1
Q ss_pred hhHhhhhhHHHHHHHH
Q 007535 111 AGICNGMAAGVMLAAS 126 (599)
Q Consensus 111 l~~l~afAaGVmLa~a 126 (599)
...+++|.+.|+++-.
T Consensus 6 v~gl~~F~~~v~laQi 21 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445566666666643
No 7
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Probab=1.56 E-value=2.2e+02 Score=21.95 Aligned_cols=11 Identities=45% Similarity=0.712 Sum_probs=5.9
Q ss_pred CCCCCCCCccc
Q 007535 588 TPYCNSAPEAV 598 (599)
Q Consensus 588 ~~~~~~~~~~~ 598 (599)
+||+|-.||.|
T Consensus 31 ~~y~~V~~~~V 41 (96)
T d1luaa2 31 TGYGNVTPDNV 41 (96)
T ss_dssp EEESSCCTTTH
T ss_pred eccCCcCHHHh
Confidence 45555555544
No 8
>d1ddba_ f.1.4.1 (A:) Proapoptotic molecule Bid {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.55 E-value=5.4e+02 Score=21.89 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.0
Q ss_pred HHHHHHHhHhhccCCC
Q 007535 575 TLCLTCTKLVCLHTPY 590 (599)
Q Consensus 575 ~l~l~~~~~~~~~~~~ 590 (599)
.+.++++|=||-|||.
T Consensus 150 ~lamlLaKkV~~h~Ps 165 (195)
T d1ddba_ 150 IMTMLLAKKVASHAPS 165 (195)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhCcH
Confidence 4567788888888873
No 9
>d1mvja_ g.3.6.1 (A:) Conotoxin {Conus striatus, S VIb [TaxId: 6493]}
Probab=1.54 E-value=3.7e+02 Score=15.23 Aligned_cols=6 Identities=50% Similarity=1.143 Sum_probs=0.0
Q ss_pred hccCCC
Q 007535 585 CLHTPY 590 (599)
Q Consensus 585 ~~~~~~ 590 (599)
|++|.|
T Consensus 8 crktsy 13 (26)
T d1mvja_ 8 CRKTSY 13 (26)
T ss_dssp CCTTTC
T ss_pred cccccc
No 10
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.52 E-value=3.4e+02 Score=17.75 Aligned_cols=9 Identities=33% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCCCCCCc
Q 007535 588 TPYCNSAPE 596 (599)
Q Consensus 588 ~~~~~~~~~ 596 (599)
|-.+||+||
T Consensus 9 tLrsP~sP~ 17 (47)
T d1zoqc1 9 TLKSPSSPQ 17 (47)
T ss_dssp TCCSCCCHH
T ss_pred HhcCCCCHH
Done!