Query 007537
Match_columns 599
No_of_seqs 374 out of 2589
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 11:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1461 Translation initiation 100.0 2E-112 4E-117 901.0 39.7 548 1-595 1-554 (673)
2 COG1208 GCD1 Nucleoside-diphos 100.0 4.7E-47 1E-51 401.5 36.9 347 28-424 1-352 (358)
3 PLN02241 glucose-1-phosphate a 100.0 9.1E-47 2E-51 411.0 31.5 366 27-419 2-407 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 1.2E-45 2.7E-50 401.2 33.5 356 27-412 2-393 (429)
5 KOG1462 Translation initiation 100.0 3.4E-46 7.4E-51 376.9 21.5 372 26-424 7-412 (433)
6 PRK05293 glgC glucose-1-phosph 100.0 1.2E-44 2.7E-49 388.2 33.7 354 27-425 2-375 (380)
7 PRK00844 glgC glucose-1-phosph 100.0 4E-44 8.6E-49 387.3 32.7 347 25-413 2-382 (407)
8 KOG1322 GDP-mannose pyrophosph 100.0 2.5E-44 5.4E-49 357.2 27.4 334 27-426 8-346 (371)
9 TIGR02092 glgD glucose-1-phosp 100.0 2.5E-44 5.5E-49 384.4 27.8 344 27-413 1-355 (369)
10 PRK00725 glgC glucose-1-phosph 100.0 2.9E-43 6.2E-48 382.2 31.7 349 27-415 14-396 (425)
11 COG0448 GlgC ADP-glucose pyrop 100.0 1.4E-43 3E-48 364.8 25.4 345 27-414 4-363 (393)
12 KOG1460 GDP-mannose pyrophosph 100.0 5.5E-43 1.2E-47 341.7 22.8 355 27-421 1-395 (407)
13 TIGR02091 glgC glucose-1-phosp 100.0 4.4E-42 9.5E-47 366.0 29.5 344 31-412 1-360 (361)
14 TIGR01208 rmlA_long glucose-1- 100.0 1.8E-40 4E-45 352.5 35.3 343 30-423 1-351 (353)
15 PRK14358 glmU bifunctional N-a 100.0 5.7E-37 1.2E-41 338.0 31.1 340 25-411 4-355 (481)
16 PRK14355 glmU bifunctional N-a 100.0 2.3E-36 5E-41 332.0 33.0 349 27-420 2-361 (459)
17 PRK14352 glmU bifunctional N-a 100.0 4.8E-35 1E-39 323.4 33.5 335 27-408 3-352 (482)
18 cd04197 eIF-2B_epsilon_N The N 100.0 7.5E-36 1.6E-40 295.8 23.1 214 29-245 1-217 (217)
19 TIGR01173 glmU UDP-N-acetylglu 100.0 1E-34 2.2E-39 318.2 32.9 348 29-424 1-358 (451)
20 PRK14356 glmU bifunctional N-a 100.0 1.5E-34 3.3E-39 317.4 30.0 351 28-423 5-365 (456)
21 PRK09451 glmU bifunctional N-a 100.0 7.1E-34 1.5E-38 312.1 32.1 344 26-424 3-362 (456)
22 COG1207 GlmU N-acetylglucosami 100.0 6.9E-34 1.5E-38 292.6 29.4 346 28-420 2-361 (460)
23 PRK14353 glmU bifunctional N-a 100.0 9.6E-33 2.1E-37 302.4 33.1 352 25-421 2-362 (446)
24 PRK14359 glmU bifunctional N-a 100.0 3.1E-32 6.8E-37 296.9 34.0 333 27-409 1-355 (430)
25 PRK14354 glmU bifunctional N-a 100.0 3.2E-32 6.9E-37 299.2 31.3 348 27-422 1-359 (458)
26 cd04198 eIF-2B_gamma_N The N-t 100.0 3.3E-33 7.1E-38 276.4 19.1 209 29-245 1-214 (214)
27 PRK14357 glmU bifunctional N-a 100.0 1.1E-31 2.4E-36 294.1 30.3 340 29-422 1-349 (448)
28 PRK14360 glmU bifunctional N-a 100.0 5.1E-31 1.1E-35 289.1 31.2 343 29-423 2-357 (450)
29 COG1209 RfbA dTDP-glucose pyro 100.0 2.8E-32 6.2E-37 267.1 18.8 231 29-303 1-237 (286)
30 cd02507 eIF-2B_gamma_N_like Th 100.0 9E-32 2E-36 266.4 21.5 211 29-245 1-216 (216)
31 TIGR01105 galF UTP-glucose-1-p 100.0 6E-31 1.3E-35 271.7 23.1 240 27-301 2-276 (297)
32 PF00483 NTP_transferase: Nucl 100.0 1.6E-30 3.6E-35 262.1 22.9 237 30-303 1-247 (248)
33 cd06425 M1P_guanylylT_B_like_N 100.0 2E-30 4.3E-35 259.7 22.7 230 29-302 1-233 (233)
34 PRK10122 GalU regulator GalF; 100.0 2.4E-30 5.2E-35 267.7 23.0 242 27-303 2-279 (297)
35 cd06428 M1P_guanylylT_A_like_N 100.0 2.3E-30 4.9E-35 263.1 22.0 235 31-301 1-257 (257)
36 PRK15480 glucose-1-phosphate t 100.0 6.4E-29 1.4E-33 256.0 22.8 231 27-302 2-241 (292)
37 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.5E-28 3.2E-33 247.2 22.5 232 29-301 1-237 (240)
38 TIGR02623 G1P_cyt_trans glucos 100.0 2.1E-28 4.6E-33 248.3 22.3 228 30-304 1-247 (254)
39 TIGR01207 rmlA glucose-1-phosp 100.0 2.2E-28 4.8E-33 251.6 21.1 232 30-302 1-237 (286)
40 cd06422 NTP_transferase_like_1 100.0 5E-28 1.1E-32 240.2 20.9 219 30-297 1-221 (221)
41 cd02541 UGPase_prokaryotic Pro 100.0 6.6E-28 1.4E-32 246.3 21.2 239 29-302 1-265 (267)
42 PRK13389 UTP--glucose-1-phosph 100.0 1.1E-27 2.3E-32 248.4 22.5 239 27-301 7-279 (302)
43 TIGR01099 galU UTP-glucose-1-p 100.0 1.1E-27 2.3E-32 243.8 21.0 234 29-297 1-260 (260)
44 cd04189 G1P_TT_long G1P_TT_lon 100.0 3.3E-27 7.2E-32 236.5 23.0 229 29-303 1-235 (236)
45 cd02524 G1P_cytidylyltransfera 100.0 5.4E-27 1.2E-31 237.9 21.4 225 31-301 1-245 (253)
46 cd06426 NTP_transferase_like_2 99.9 2.3E-26 5.1E-31 227.7 22.9 219 31-298 1-220 (220)
47 cd04181 NTP_transferase NTP_tr 99.9 1.1E-26 2.4E-31 229.0 20.3 215 31-289 1-217 (217)
48 cd06915 NTP_transferase_WcbM_l 99.9 9.6E-26 2.1E-30 223.1 22.2 220 31-297 1-222 (223)
49 COG1210 GalU UDP-glucose pyrop 99.9 3.4E-24 7.4E-29 210.5 18.6 244 27-304 3-272 (291)
50 cd02523 PC_cytidylyltransferas 99.9 2.5E-23 5.4E-28 207.6 17.8 223 31-297 1-228 (229)
51 cd02508 ADP_Glucose_PP ADP-glu 99.9 1.4E-23 3.1E-28 205.3 14.6 186 31-288 1-200 (200)
52 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 6.8E-22 1.5E-26 197.4 19.0 218 31-294 1-230 (231)
53 cd02509 GDP-M1P_Guanylyltransf 99.9 1.4E-21 3.1E-26 200.3 15.6 187 29-245 1-202 (274)
54 cd02540 GT2_GlmU_N_bac N-termi 99.8 3.1E-19 6.8E-24 177.7 19.0 218 31-292 1-227 (229)
55 TIGR01479 GMP_PMI mannose-1-ph 99.8 2E-19 4.4E-24 197.3 17.4 238 29-297 1-280 (468)
56 PRK05450 3-deoxy-manno-octulos 99.8 9.4E-18 2E-22 169.1 22.9 237 28-301 2-244 (245)
57 COG1213 Predicted sugar nucleo 99.8 4.7E-18 1E-22 164.6 14.7 222 27-305 2-232 (239)
58 cd02517 CMP-KDO-Synthetase CMP 99.8 4.9E-17 1.1E-21 163.3 22.1 227 29-299 2-238 (239)
59 PRK13368 3-deoxy-manno-octulos 99.7 1E-15 2.3E-20 153.5 21.8 225 28-299 2-236 (238)
60 PRK11132 cysE serine acetyltra 99.6 8.8E-17 1.9E-21 162.2 5.2 120 257-378 36-183 (273)
61 PRK15460 cpsB mannose-1-phosph 99.6 9.5E-16 2.1E-20 167.2 13.4 167 26-208 3-187 (478)
62 COG0836 {ManC} Mannose-1-phosp 99.6 2.4E-15 5.2E-20 151.5 13.1 164 28-207 1-179 (333)
63 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 6E-15 1.3E-19 147.0 12.4 136 277-424 42-188 (231)
64 COG4750 LicC CTP:phosphocholin 99.5 2E-14 4.3E-19 133.9 8.7 107 29-144 1-107 (231)
65 TIGR00454 conserved hypothetic 99.5 6.6E-13 1.4E-17 128.0 15.4 116 29-157 1-118 (183)
66 cd05636 LbH_G1P_TT_C_like Puta 99.5 6.7E-13 1.4E-17 125.6 14.1 100 325-424 33-157 (163)
67 KOG1461 Translation initiation 99.5 1.3E-13 2.9E-18 148.5 9.5 104 324-429 330-434 (673)
68 cd05636 LbH_G1P_TT_C_like Puta 99.4 1.9E-12 4.2E-17 122.5 13.7 90 323-412 13-103 (163)
69 TIGR02287 PaaY phenylacetic ac 99.4 1E-12 2.3E-17 127.2 11.3 98 328-425 9-115 (192)
70 COG1044 LpxD UDP-3-O-[3-hydrox 99.4 1E-12 2.2E-17 134.0 10.3 65 330-394 114-180 (338)
71 PLN02917 CMP-KDO synthetase 99.4 3.4E-11 7.3E-16 124.6 21.6 236 27-302 46-288 (293)
72 cd04745 LbH_paaY_like paaY-lik 99.4 3.3E-12 7.2E-17 119.9 12.6 95 330-424 3-106 (155)
73 cd03356 LbH_G1P_AT_C_like Left 99.4 2.2E-12 4.7E-17 106.7 10.0 77 348-424 2-78 (79)
74 PRK13627 carnitine operon prot 99.4 3.7E-12 8E-17 123.8 12.7 98 328-425 11-117 (196)
75 cd05787 LbH_eIF2B_epsilon eIF- 99.4 2.8E-12 6.1E-17 105.8 10.1 77 348-424 2-78 (79)
76 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 4E-12 8.6E-17 105.8 10.8 78 330-408 2-79 (81)
77 PF12804 NTP_transf_3: MobA-li 99.4 6.3E-12 1.4E-16 118.1 13.3 109 31-156 1-114 (160)
78 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 1.1E-11 2.3E-16 126.5 14.1 96 327-422 129-250 (338)
79 cd04745 LbH_paaY_like paaY-lik 99.3 1.7E-11 3.7E-16 115.1 14.5 99 323-421 14-121 (155)
80 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 6.2E-12 1.3E-16 104.7 10.2 78 347-425 1-78 (81)
81 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.3 1.1E-11 2.3E-16 126.0 13.6 44 549-596 205-248 (254)
82 cd04646 LbH_Dynactin_6 Dynacti 99.3 1.2E-11 2.5E-16 117.3 12.7 95 330-424 2-111 (164)
83 PLN02472 uncharacterized prote 99.3 1.1E-11 2.4E-16 124.2 13.0 97 329-425 61-172 (246)
84 cd03356 LbH_G1P_AT_C_like Left 99.3 1E-11 2.2E-16 102.7 10.5 77 329-406 1-78 (79)
85 PRK05289 UDP-N-acetylglucosami 99.3 1.3E-11 2.9E-16 125.7 13.1 102 323-424 10-133 (262)
86 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.3 1.2E-11 2.6E-16 125.6 12.5 100 322-421 24-145 (254)
87 cd05824 LbH_M1P_guanylylT_C Ma 99.3 1.7E-11 3.6E-16 101.8 10.8 75 331-405 3-78 (80)
88 PLN02296 carbonate dehydratase 99.3 1.4E-11 2.9E-16 125.2 12.3 95 330-424 55-164 (269)
89 cd04650 LbH_FBP Ferripyochelin 99.3 2E-11 4.4E-16 114.4 12.3 95 330-424 3-106 (154)
90 TIGR02287 PaaY phenylacetic ac 99.3 3E-11 6.4E-16 117.1 13.8 98 323-420 22-128 (192)
91 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 3E-11 6.5E-16 117.5 13.6 101 323-424 11-112 (193)
92 TIGR01852 lipid_A_lpxA acyl-[a 99.3 3.4E-11 7.4E-16 122.3 14.1 99 323-421 24-144 (254)
93 cd04651 LbH_G1P_AT_C Glucose-1 99.3 2.2E-11 4.8E-16 106.4 10.8 80 334-415 2-81 (104)
94 TIGR01852 lipid_A_lpxA acyl-[a 99.3 2.7E-11 5.8E-16 123.1 13.1 101 323-423 6-128 (254)
95 cd04650 LbH_FBP Ferripyochelin 99.3 6.5E-11 1.4E-15 111.0 14.4 111 309-421 2-121 (154)
96 TIGR01853 lipid_A_lpxD UDP-3-O 99.3 7.1E-11 1.5E-15 123.8 16.1 70 325-394 101-172 (324)
97 TIGR03308 phn_thr-fam phosphon 99.3 3.5E-11 7.5E-16 117.9 12.7 94 330-424 5-136 (204)
98 PLN02472 uncharacterized prote 99.3 4.9E-11 1.1E-15 119.6 13.9 98 323-420 73-185 (246)
99 cd04645 LbH_gamma_CA_like Gamm 99.3 3.5E-11 7.5E-16 112.7 12.0 95 330-424 2-105 (153)
100 COG0663 PaaY Carbonic anhydras 99.3 2.7E-11 5.9E-16 113.3 11.0 95 330-424 14-117 (176)
101 PLN02296 carbonate dehydratase 99.3 5.4E-11 1.2E-15 120.9 14.2 98 323-420 66-178 (269)
102 cd04182 GT_2_like_f GT_2_like_ 99.3 8.8E-11 1.9E-15 112.6 14.8 112 29-155 1-118 (186)
103 TIGR03310 matur_ygfJ molybdenu 99.3 9.2E-11 2E-15 113.0 14.8 113 31-156 2-118 (188)
104 TIGR00965 dapD 2,3,4,5-tetrahy 99.3 4.1E-11 8.9E-16 120.2 12.5 97 323-425 108-214 (269)
105 cd05824 LbH_M1P_guanylylT_C Ma 99.3 2.9E-11 6.2E-16 100.4 9.6 76 349-424 3-79 (80)
106 COG0663 PaaY Carbonic anhydras 99.2 7.4E-11 1.6E-15 110.4 12.6 113 305-424 9-129 (176)
107 cd04646 LbH_Dynactin_6 Dynacti 99.2 1E-10 2.2E-15 110.9 13.7 94 324-417 14-122 (164)
108 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 9.1E-11 2E-15 124.3 14.6 89 332-420 135-249 (343)
109 cd05635 LbH_unknown Uncharacte 99.2 1E-10 2.2E-15 101.7 11.9 86 325-412 9-95 (101)
110 TIGR01853 lipid_A_lpxD UDP-3-O 99.2 7.2E-11 1.6E-15 123.7 12.8 104 321-424 115-245 (324)
111 PRK12461 UDP-N-acetylglucosami 99.2 1.1E-10 2.3E-15 118.3 13.5 73 323-395 7-93 (255)
112 cd03350 LbH_THP_succinylT 2,3, 99.2 1.6E-10 3.5E-15 106.4 13.5 95 325-424 11-115 (139)
113 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.2 8.2E-11 1.8E-15 117.4 12.3 99 323-421 94-207 (231)
114 cd03359 LbH_Dynactin_5 Dynacti 99.2 1.6E-10 3.4E-15 109.3 13.5 96 325-420 19-131 (161)
115 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 9.4E-11 2E-15 124.3 13.2 103 322-424 107-235 (343)
116 TIGR00466 kdsB 3-deoxy-D-manno 99.2 1E-09 2.2E-14 110.4 19.5 228 31-294 2-237 (238)
117 cd03350 LbH_THP_succinylT 2,3, 99.2 2E-10 4.3E-15 105.8 13.0 61 364-424 33-103 (139)
118 PRK05289 UDP-N-acetylglucosami 99.2 1.1E-10 2.4E-15 119.0 12.0 101 320-420 25-147 (262)
119 cd05787 LbH_eIF2B_epsilon eIF- 99.2 1.5E-10 3.2E-15 95.4 10.6 77 329-411 1-77 (79)
120 TIGR00965 dapD 2,3,4,5-tetrahy 99.2 1.5E-10 3.3E-15 116.1 12.5 92 332-423 99-200 (269)
121 COG2266 GTP:adenosylcobinamide 99.2 2E-10 4.4E-15 106.7 12.2 110 29-154 1-112 (177)
122 cd03360 LbH_AT_putative Putati 99.2 5.1E-10 1.1E-14 107.8 15.3 91 329-419 92-185 (197)
123 cd03358 LbH_WxcM_N_like WcxM-l 99.2 1.3E-10 2.7E-15 103.7 10.1 94 330-424 1-95 (119)
124 cd04645 LbH_gamma_CA_like Gamm 99.2 5.1E-10 1.1E-14 104.8 13.9 99 323-421 13-120 (153)
125 PRK14355 glmU bifunctional N-a 99.2 2.4E-10 5.3E-15 125.9 13.6 92 334-425 256-349 (459)
126 cd00710 LbH_gamma_CA Gamma car 99.2 5.1E-10 1.1E-14 106.4 13.9 95 326-421 19-123 (167)
127 cd02513 CMP-NeuAc_Synthase CMP 99.2 1.9E-09 4.1E-14 106.8 18.3 209 28-298 1-220 (223)
128 TIGR00453 ispD 2-C-methyl-D-er 99.2 2.4E-09 5.3E-14 105.9 19.0 111 31-155 2-118 (217)
129 cd00710 LbH_gamma_CA Gamma car 99.1 4.8E-10 1E-14 106.6 13.0 95 329-424 4-109 (167)
130 TIGR03570 NeuD_NnaD sugar O-ac 99.1 1.3E-09 2.9E-14 105.8 16.3 48 329-376 95-143 (201)
131 cd03360 LbH_AT_putative Putati 99.1 6.5E-10 1.4E-14 107.0 13.9 84 328-411 97-183 (197)
132 PRK11830 dapD 2,3,4,5-tetrahyd 99.1 3.1E-10 6.6E-15 114.9 11.5 95 326-420 108-218 (272)
133 cd03359 LbH_Dynactin_5 Dynacti 99.1 5.5E-10 1.2E-14 105.5 12.6 95 331-425 5-118 (161)
134 PRK13627 carnitine operon prot 99.1 8.8E-10 1.9E-14 107.2 14.1 92 325-421 26-125 (196)
135 cd03353 LbH_GlmU_C N-acetyl-gl 99.1 4.2E-10 9E-15 109.5 11.6 76 347-423 52-128 (193)
136 TIGR03570 NeuD_NnaD sugar O-ac 99.1 8.1E-10 1.8E-14 107.3 13.6 70 325-394 97-168 (201)
137 COG1207 GlmU N-acetylglucosami 99.1 1.4E-10 3.1E-15 121.0 8.4 89 337-425 260-349 (460)
138 KOG1462 Translation initiation 99.1 1.8E-10 3.9E-15 118.3 9.0 85 327-412 334-418 (433)
139 PRK14353 glmU bifunctional N-a 99.1 5.2E-10 1.1E-14 122.9 12.9 86 325-410 278-369 (446)
140 PRK11830 dapD 2,3,4,5-tetrahyd 99.1 5.4E-10 1.2E-14 113.2 11.9 99 326-424 102-216 (272)
141 PRK12461 UDP-N-acetylglucosami 99.1 5.2E-10 1.1E-14 113.3 11.3 58 321-378 23-93 (255)
142 cd03352 LbH_LpxD UDP-3-O-acyl- 99.1 2E-09 4.3E-14 105.6 13.8 101 324-424 16-142 (205)
143 PRK09382 ispDF bifunctional 2- 99.1 1.3E-08 2.9E-13 108.6 21.1 117 26-155 3-123 (378)
144 cd02503 MobA MobA catalyzes th 99.0 1.1E-09 2.4E-14 105.0 10.9 105 29-153 1-109 (181)
145 cd04651 LbH_G1P_AT_C Glucose-1 99.0 8E-10 1.7E-14 96.6 8.9 72 352-425 2-73 (104)
146 TIGR01173 glmU UDP-N-acetylglu 99.0 8.7E-10 1.9E-14 121.1 11.2 97 323-420 275-377 (451)
147 COG2068 Uncharacterized MobA-r 99.0 3.7E-09 8.1E-14 101.1 12.6 118 26-156 3-125 (199)
148 PRK14356 glmU bifunctional N-a 99.0 1.1E-09 2.4E-14 120.6 10.4 99 325-425 285-384 (456)
149 cd04649 LbH_THP_succinylT_puta 99.0 3.4E-09 7.5E-14 96.7 11.6 94 330-426 10-113 (147)
150 COG1043 LpxA Acyl-[acyl carrie 99.0 9.6E-10 2.1E-14 106.6 8.4 100 322-421 10-131 (260)
151 TIGR03308 phn_thr-fam phosphon 99.0 3.9E-09 8.5E-14 103.5 12.7 51 327-378 19-69 (204)
152 PRK09677 putative lipopolysacc 99.0 7E-09 1.5E-13 100.9 14.1 59 321-379 37-102 (192)
153 PRK09451 glmU bifunctional N-a 99.0 1.9E-09 4.1E-14 118.8 11.2 98 323-421 279-382 (456)
154 TIGR03202 pucB xanthine dehydr 99.0 6.8E-09 1.5E-13 100.6 13.4 115 29-155 1-123 (190)
155 cd03352 LbH_LpxD UDP-3-O-acyl- 99.0 6.6E-09 1.4E-13 102.0 13.2 83 330-412 4-108 (205)
156 PRK00317 mobA molybdopterin-gu 99.0 7.4E-09 1.6E-13 100.6 13.2 110 27-155 2-116 (193)
157 TIGR02665 molyb_mobA molybdopt 99.0 7.4E-09 1.6E-13 99.8 13.1 110 29-155 1-115 (186)
158 PRK14358 glmU bifunctional N-a 99.0 2E-09 4.3E-14 119.3 10.3 102 322-424 283-390 (481)
159 PRK10502 putative acyl transfe 99.0 4.7E-09 1E-13 101.2 11.3 92 327-418 51-158 (182)
160 cd02516 CDP-ME_synthetase CDP- 99.0 8.6E-09 1.9E-13 101.8 13.5 116 30-156 2-124 (218)
161 TIGR01172 cysE serine O-acetyl 98.9 8E-09 1.7E-13 97.7 12.1 82 328-419 56-148 (162)
162 PRK00155 ispD 2-C-methyl-D-ery 98.9 1.2E-08 2.5E-13 101.8 13.9 117 27-156 2-124 (227)
163 PRK05293 glgC glucose-1-phosph 98.9 3.9E-09 8.4E-14 113.5 11.2 79 333-411 293-379 (380)
164 cd04649 LbH_THP_succinylT_puta 98.9 9.4E-09 2E-13 93.9 11.6 90 327-419 13-112 (147)
165 PRK14360 glmU bifunctional N-a 98.9 3.3E-09 7.2E-14 116.6 10.3 10 211-220 172-181 (450)
166 PLN02728 2-C-methyl-D-erythrit 98.9 1.1E-08 2.3E-13 103.6 13.0 120 24-156 20-146 (252)
167 PRK14359 glmU bifunctional N-a 98.9 4.7E-09 1E-13 114.7 10.8 80 345-424 298-395 (430)
168 PRK09527 lacA galactoside O-ac 98.9 1.4E-08 3.1E-13 99.0 12.5 91 330-420 58-167 (203)
169 PRK02726 molybdopterin-guanine 98.9 1.7E-08 3.6E-13 98.9 12.3 111 26-154 5-119 (200)
170 COG1208 GCD1 Nucleoside-diphos 98.9 8.8E-09 1.9E-13 109.7 10.7 83 336-420 253-336 (358)
171 PRK14352 glmU bifunctional N-a 98.9 1.4E-08 3E-13 112.8 12.1 68 323-392 285-353 (482)
172 cd03358 LbH_WxcM_N_like WcxM-l 98.9 2.5E-08 5.5E-13 88.8 11.6 39 373-411 61-100 (119)
173 PRK02862 glgC glucose-1-phosph 98.9 7.3E-09 1.6E-13 113.2 9.5 67 327-395 308-393 (429)
174 TIGR03536 DapD_gpp 2,3,4,5-tet 98.8 2.8E-08 6E-13 100.9 12.7 91 330-423 187-287 (341)
175 TIGR03535 DapD_actino 2,3,4,5- 98.8 3.1E-08 6.8E-13 100.0 12.8 89 323-421 161-260 (319)
176 PRK13385 2-C-methyl-D-erythrit 98.8 3.8E-08 8.3E-13 98.4 13.2 119 28-156 2-126 (230)
177 PRK14357 glmU bifunctional N-a 98.8 1.4E-08 2.9E-13 111.7 9.9 74 326-401 272-346 (448)
178 PRK14489 putative bifunctional 98.8 5.6E-08 1.2E-12 103.9 14.3 115 26-155 3-120 (366)
179 cd05635 LbH_unknown Uncharacte 98.8 4.1E-08 8.9E-13 85.3 10.6 78 344-424 10-89 (101)
180 PLN02694 serine O-acetyltransf 98.8 2.7E-08 5.8E-13 101.1 10.7 35 377-411 210-245 (294)
181 cd02518 GT2_SpsF SpsF is a gly 98.8 5.4E-08 1.2E-12 97.4 12.8 109 31-156 2-116 (233)
182 cd00208 LbetaH Left-handed par 98.8 4.3E-08 9.3E-13 80.0 10.0 71 347-417 2-77 (78)
183 COG2171 DapD Tetrahydrodipicol 98.8 2.4E-08 5.1E-13 98.9 9.7 99 322-425 115-223 (271)
184 cd04647 LbH_MAT_like Maltose O 98.8 4.2E-08 9.1E-13 85.8 10.2 86 328-418 2-92 (109)
185 cd03357 LbH_MAT_GAT Maltose O- 98.8 4.2E-08 9.2E-13 93.4 11.0 75 345-419 62-153 (169)
186 cd03354 LbH_SAT Serine acetylt 98.8 5.8E-08 1.2E-12 84.2 10.8 79 336-419 5-89 (101)
187 PRK10191 putative acyl transfe 98.8 4.1E-08 8.9E-13 90.9 10.0 13 381-393 94-106 (146)
188 PRK10092 maltose O-acetyltrans 98.8 8.1E-08 1.8E-12 92.5 12.4 81 337-420 71-165 (183)
189 PRK14354 glmU bifunctional N-a 98.8 3.6E-08 7.8E-13 108.7 11.4 81 325-407 281-362 (458)
190 PLN02241 glucose-1-phosphate a 98.8 3E-08 6.6E-13 108.6 10.4 93 328-422 316-429 (436)
191 cd03357 LbH_MAT_GAT Maltose O- 98.7 7.7E-08 1.7E-12 91.6 11.5 35 326-360 61-97 (169)
192 PRK11132 cysE serine acetyltra 98.7 5.2E-08 1.1E-12 98.9 10.1 84 327-419 141-228 (273)
193 cd04180 UGPase_euk_like Eukary 98.7 4.2E-08 9.2E-13 100.1 9.4 120 30-157 2-134 (266)
194 TIGR03584 PseF pseudaminic aci 98.7 8.3E-07 1.8E-11 88.4 17.8 206 31-298 2-217 (222)
195 cd05825 LbH_wcaF_like wcaF-lik 98.7 1.4E-07 3.1E-12 82.7 10.9 20 399-418 71-90 (107)
196 PLN02357 serine acetyltransfer 98.7 6.8E-08 1.5E-12 100.8 10.2 43 379-421 278-325 (360)
197 TIGR03536 DapD_gpp 2,3,4,5-tet 98.7 9.8E-08 2.1E-12 96.9 11.0 91 330-424 175-276 (341)
198 PLN02739 serine acetyltransfer 98.7 5.7E-08 1.2E-12 100.5 9.4 50 364-418 233-291 (355)
199 cd00208 LbetaH Left-handed par 98.7 1.1E-07 2.4E-12 77.5 9.1 63 329-391 2-74 (78)
200 PRK09527 lacA galactoside O-ac 98.7 1.6E-07 3.5E-12 91.7 11.8 91 325-422 73-179 (203)
201 PLN02357 serine acetyltransfer 98.7 9.5E-08 2.1E-12 99.7 10.5 47 363-409 279-326 (360)
202 PRK10502 putative acyl transfe 98.7 9.5E-08 2.1E-12 92.1 9.9 63 362-424 71-152 (182)
203 PRK10092 maltose O-acetyltrans 98.7 1.9E-07 4.1E-12 89.9 11.6 92 324-422 70-177 (183)
204 COG1043 LpxA Acyl-[acyl carrie 98.6 9.3E-08 2E-12 93.0 8.6 59 320-378 26-97 (260)
205 TIGR01208 rmlA_long glucose-1- 98.6 1.2E-07 2.6E-12 101.0 10.4 84 337-424 246-332 (353)
206 PRK10191 putative acyl transfe 98.6 1.8E-07 3.9E-12 86.6 9.9 10 385-394 92-101 (146)
207 COG1212 KdsB CMP-2-keto-3-deox 98.6 3.8E-06 8.3E-11 81.3 19.1 233 27-301 2-242 (247)
208 KOG1322 GDP-mannose pyrophosph 98.6 3E-08 6.4E-13 100.4 5.0 92 324-415 261-353 (371)
209 TIGR01172 cysE serine O-acetyl 98.6 1.5E-07 3.3E-12 88.9 9.4 81 328-421 68-160 (162)
210 cd05825 LbH_wcaF_like wcaF-lik 98.6 3E-07 6.6E-12 80.7 10.4 25 399-423 65-89 (107)
211 PLN02694 serine O-acetyltransf 98.6 1.4E-07 3.1E-12 95.8 9.4 10 412-421 250-259 (294)
212 PRK00844 glgC glucose-1-phosph 98.6 1.9E-07 4.1E-12 101.5 11.0 70 325-396 313-382 (407)
213 KOG3121 Dynactin, subunit p25 98.6 5.6E-08 1.2E-12 86.5 5.5 86 326-411 32-134 (184)
214 KOG1460 GDP-mannose pyrophosph 98.6 1E-07 2.2E-12 95.0 7.9 81 340-421 283-364 (407)
215 TIGR02092 glgD glucose-1-phosp 98.6 1.1E-07 2.4E-12 101.8 8.8 73 350-425 277-349 (369)
216 PLN02739 serine acetyltransfer 98.6 1.7E-07 3.6E-12 97.1 9.5 81 329-421 213-304 (355)
217 PF01128 IspD: 2-C-methyl-D-er 98.6 3.4E-07 7.4E-12 90.7 11.4 112 29-155 1-119 (221)
218 TIGR02091 glgC glucose-1-phosp 98.6 1.7E-07 3.6E-12 100.1 9.9 73 350-424 282-354 (361)
219 cd04193 UDPGlcNAc_PPase UDPGlc 98.6 1.7E-06 3.6E-11 90.7 16.0 165 26-207 13-222 (323)
220 PRK00560 molybdopterin-guanine 98.6 3.7E-07 8E-12 89.1 10.4 52 26-83 6-58 (196)
221 COG0746 MobA Molybdopterin-gua 98.5 3.7E-07 8.1E-12 88.5 9.9 108 27-155 3-114 (192)
222 cd03354 LbH_SAT Serine acetylt 98.5 5.5E-07 1.2E-11 78.0 9.7 54 364-422 24-80 (101)
223 TIGR03535 DapD_actino 2,3,4,5- 98.5 5.5E-07 1.2E-11 91.2 10.7 89 331-424 151-251 (319)
224 PRK14490 putative bifunctional 98.5 6.9E-07 1.5E-11 95.7 11.2 108 26-152 172-283 (369)
225 cd04647 LbH_MAT_like Maltose O 98.5 1E-06 2.2E-11 77.0 10.0 75 346-420 2-82 (109)
226 COG2171 DapD Tetrahydrodipicol 98.5 4E-07 8.6E-12 90.3 8.1 92 332-423 107-209 (271)
227 PRK09677 putative lipopolysacc 98.5 9.5E-07 2.1E-11 85.9 10.6 34 327-360 65-100 (192)
228 PRK00725 glgC glucose-1-phosph 98.5 6E-07 1.3E-11 98.1 10.3 67 327-395 327-393 (425)
229 PRK14500 putative bifunctional 98.4 1.7E-06 3.7E-11 91.5 11.8 110 26-153 158-270 (346)
230 COG1211 IspD 4-diphosphocytidy 98.4 2.9E-06 6.4E-11 83.9 11.4 114 27-151 3-123 (230)
231 COG1045 CysE Serine acetyltran 98.4 1.8E-06 3.8E-11 82.1 9.4 79 333-420 67-155 (194)
232 KOG3121 Dynactin, subunit p25 98.4 5.4E-07 1.2E-11 80.3 5.1 82 342-425 36-130 (184)
233 PTZ00339 UDP-N-acetylglucosami 98.3 1.2E-05 2.6E-10 88.1 15.8 166 26-207 104-316 (482)
234 COG0448 GlgC ADP-glucose pyrop 98.3 1.7E-06 3.6E-11 90.8 8.5 66 332-397 295-363 (393)
235 COG1045 CysE Serine acetyltran 98.3 3.2E-06 6.9E-11 80.4 8.5 86 326-411 72-169 (194)
236 cd03349 LbH_XAT Xenobiotic acy 98.3 7E-06 1.5E-10 76.1 10.6 31 330-360 4-36 (145)
237 cd03349 LbH_XAT Xenobiotic acy 98.2 8.5E-06 1.8E-10 75.6 9.7 19 339-357 21-39 (145)
238 KOG4042 Dynactin subunit p27/W 98.0 5.1E-06 1.1E-10 74.9 3.6 96 328-423 9-128 (190)
239 COG0110 WbbJ Acetyltransferase 97.8 0.00013 2.8E-09 70.5 10.4 16 362-377 87-102 (190)
240 PF02348 CTP_transf_3: Cytidyl 97.8 0.00054 1.2E-08 67.5 14.6 113 31-157 2-118 (217)
241 KOG4750 Serine O-acetyltransfe 97.8 3.7E-05 8E-10 74.1 5.9 77 335-420 150-236 (269)
242 TIGR02353 NRPS_term_dom non-ri 97.8 9.5E-05 2.1E-09 85.4 10.2 57 363-419 617-680 (695)
243 TIGR02353 NRPS_term_dom non-ri 97.8 7.8E-05 1.7E-09 86.1 9.4 15 346-360 132-146 (695)
244 COG0110 WbbJ Acetyltransferase 97.8 0.00014 3E-09 70.3 9.7 34 327-360 67-102 (190)
245 PLN02474 UTP--glucose-1-phosph 97.6 0.014 3.1E-07 63.8 23.9 162 27-207 78-277 (469)
246 KOG4042 Dynactin subunit p27/W 97.6 7.7E-05 1.7E-09 67.4 4.5 98 323-425 22-136 (190)
247 KOG4750 Serine O-acetyltransfe 97.4 0.00021 4.5E-09 69.1 5.5 62 334-395 169-234 (269)
248 COG1083 NeuA CMP-N-acetylneura 97.3 0.013 2.7E-07 56.9 16.2 213 27-301 2-222 (228)
249 PF00132 Hexapep: Bacterial tr 97.3 0.00017 3.7E-09 49.9 2.4 31 347-377 3-34 (36)
250 PF14602 Hexapep_2: Hexapeptid 97.2 0.00039 8.6E-09 47.6 3.7 14 364-377 3-16 (34)
251 cd00897 UGPase_euk Eukaryotic 97.2 0.01 2.2E-07 61.6 15.2 161 27-207 2-201 (300)
252 COG4801 Predicted acyltransfer 97.0 0.0022 4.7E-08 62.4 7.9 88 326-414 15-104 (277)
253 PF14602 Hexapep_2: Hexapeptid 97.0 0.00079 1.7E-08 46.1 3.3 15 363-377 18-32 (34)
254 PLN02435 probable UDP-N-acetyl 96.9 0.019 4.1E-07 63.2 15.1 164 26-206 114-328 (493)
255 PRK00576 molybdopterin-guanine 96.9 0.0028 6.1E-08 60.6 7.4 91 49-154 3-101 (178)
256 COG4801 Predicted acyltransfer 96.9 0.0026 5.7E-08 61.9 6.9 58 355-412 26-84 (277)
257 PRK13412 fkp bifunctional fuco 96.7 0.007 1.5E-07 71.5 10.5 97 189-296 195-306 (974)
258 COG1861 SpsF Spore coat polysa 96.5 0.041 8.9E-07 53.7 12.4 110 30-157 4-121 (241)
259 PLN02830 UDP-sugar pyrophospho 96.5 0.089 1.9E-06 59.7 16.9 137 27-171 127-311 (615)
260 cd06424 UGGPase UGGPase cataly 96.5 0.0082 1.8E-07 62.5 8.1 66 30-98 2-80 (315)
261 COG4284 UDP-glucose pyrophosph 96.5 0.053 1.2E-06 58.7 14.0 164 26-207 103-304 (472)
262 PF01704 UDPGP: UTP--glucose-1 96.0 0.2 4.3E-06 54.6 15.8 163 25-207 53-256 (420)
263 TIGR03552 F420_cofC 2-phospho- 95.6 0.067 1.4E-06 51.8 9.4 86 58-154 29-117 (195)
264 PF07959 Fucokinase: L-fucokin 95.6 0.021 4.6E-07 62.2 6.4 66 351-417 273-338 (414)
265 PF07959 Fucokinase: L-fucokin 93.3 0.14 3.1E-06 55.7 6.0 54 366-420 271-324 (414)
266 cd00761 Glyco_tranf_GTA_type G 91.9 1.2 2.5E-05 39.4 9.2 97 53-154 2-103 (156)
267 PF00535 Glycos_transf_2: Glyc 82.4 11 0.00023 33.9 9.5 99 53-156 3-106 (169)
268 cd06439 CESA_like_1 CESA_like_ 71.5 46 0.00099 32.8 11.3 105 43-154 22-135 (251)
269 cd04186 GT_2_like_c Subfamily 71.0 45 0.00097 29.9 10.4 95 53-155 2-101 (166)
270 cd04195 GT2_AmsE_like GT2_AmsE 69.5 51 0.0011 31.1 10.7 97 53-155 3-107 (201)
271 cd04188 DPG_synthase DPG_synth 67.7 43 0.00092 32.1 9.9 98 53-154 2-108 (211)
272 cd06423 CESA_like CESA_like is 67.6 47 0.001 29.5 9.7 99 53-155 2-105 (180)
273 cd02510 pp-GalNAc-T pp-GalNAc- 63.3 54 0.0012 33.6 10.2 101 53-156 3-111 (299)
274 KOG2388 UDP-N-acetylglucosamin 62.9 8.2 0.00018 42.2 4.0 70 22-94 91-175 (477)
275 PRK13412 fkp bifunctional fuco 62.0 16 0.00035 43.9 6.5 41 358-398 332-373 (974)
276 cd06427 CESA_like_2 CESA_like_ 58.7 1.1E+02 0.0023 30.1 11.1 99 53-155 6-111 (241)
277 cd06434 GT2_HAS Hyaluronan syn 58.3 77 0.0017 30.7 9.9 96 52-154 4-103 (235)
278 cd06438 EpsO_like EpsO protein 58.1 1.3E+02 0.0028 28.0 11.1 97 53-155 2-108 (183)
279 cd04179 DPM_DPG-synthase_like 56.6 94 0.002 28.6 9.8 98 53-155 2-106 (185)
280 cd06433 GT_2_WfgS_like WfgS an 50.1 1.2E+02 0.0027 27.9 9.5 96 53-156 3-103 (202)
281 PF04519 Bactofilin: Polymer-f 49.3 30 0.00064 29.5 4.6 28 384-411 68-95 (101)
282 cd02511 Beta4Glucosyltransfera 47.6 1.3E+02 0.0028 29.4 9.6 90 52-153 4-96 (229)
283 COG1664 CcmA Integral membrane 44.5 79 0.0017 29.3 6.8 32 381-412 86-117 (146)
284 PF04519 Bactofilin: Polymer-f 44.0 39 0.00084 28.8 4.4 74 335-412 4-79 (101)
285 cd02525 Succinoglycan_BP_ExoA 43.9 1.5E+02 0.0032 28.7 9.4 97 53-155 5-108 (249)
286 cd06435 CESA_NdvC_like NdvC_li 43.3 2.7E+02 0.0058 26.9 11.0 96 53-154 3-110 (236)
287 cd06442 DPM1_like DPM1_like re 41.7 1.5E+02 0.0032 28.3 8.8 97 53-154 2-104 (224)
288 KOG2638 UDP-glucose pyrophosph 40.2 5.3E+02 0.012 28.2 21.7 65 27-94 102-173 (498)
289 COG2179 Predicted hydrolase of 39.8 2E+02 0.0043 27.4 8.6 101 52-173 38-141 (175)
290 PLN02726 dolichyl-phosphate be 39.7 2.7E+02 0.006 27.3 10.6 100 53-155 14-120 (243)
291 PRK10714 undecaprenyl phosphat 39.2 2.1E+02 0.0046 30.0 10.0 99 52-154 10-116 (325)
292 PRK11204 N-glycosyltransferase 39.0 1.8E+02 0.0039 31.4 9.8 99 52-155 58-161 (420)
293 PRK10018 putative glycosyl tra 38.1 3.6E+02 0.0078 27.6 11.3 96 53-155 10-112 (279)
294 cd04184 GT2_RfbC_Mx_like Myxoc 38.0 3.2E+02 0.007 25.4 10.4 98 53-155 6-110 (202)
295 PTZ00260 dolichyl-phosphate be 37.9 3.4E+02 0.0075 28.5 11.4 98 53-155 75-189 (333)
296 cd04187 DPM1_like_bac Bacteria 37.3 1.5E+02 0.0033 27.3 7.8 95 53-152 2-104 (181)
297 cd04185 GT_2_like_b Subfamily 37.3 3.5E+02 0.0075 25.3 10.5 98 53-154 2-105 (202)
298 COG1664 CcmA Integral membrane 37.1 92 0.002 28.9 6.0 75 332-409 22-97 (146)
299 cd04196 GT_2_like_d Subfamily 36.8 2.7E+02 0.0058 26.1 9.7 96 53-152 3-103 (214)
300 cd04192 GT_2_like_e Subfamily 35.7 2.9E+02 0.0063 26.2 9.8 98 53-155 2-109 (229)
301 cd06420 GT2_Chondriotin_Pol_N 34.7 3.5E+02 0.0077 24.6 10.2 97 53-153 2-104 (182)
302 cd02526 GT2_RfbF_like RfbF is 34.2 3E+02 0.0065 26.4 9.8 90 54-150 3-97 (237)
303 cd02520 Glucosylceramide_synth 33.7 2.8E+02 0.006 26.1 9.2 97 52-152 5-110 (196)
304 cd06421 CESA_CelA_like CESA_Ce 30.2 4.2E+02 0.0092 25.2 10.0 98 52-155 5-111 (234)
305 PRK14583 hmsR N-glycosyltransf 29.8 3.1E+02 0.0067 30.1 9.8 99 52-155 79-182 (444)
306 cd06913 beta3GnTL1_like Beta 1 29.3 4.8E+02 0.01 24.8 10.2 98 53-155 2-111 (219)
307 cd02522 GT_2_like_a GT_2_like_ 25.9 5.6E+02 0.012 24.1 11.1 90 53-154 4-98 (221)
308 PRK10073 putative glycosyl tra 25.5 6.1E+02 0.013 26.5 10.8 98 52-155 10-112 (328)
309 TIGR00285 DNA-binding protein 25.2 85 0.0018 26.4 3.2 29 54-82 4-34 (87)
310 cd07038 TPP_PYR_PDC_IPDC_like 24.8 5.6E+02 0.012 23.7 10.0 84 63-156 1-85 (162)
311 PF01983 CofC: Guanylyl transf 24.7 80 0.0017 31.3 3.6 107 29-153 1-113 (217)
312 PF05060 MGAT2: N-acetylglucos 23.8 2E+02 0.0044 30.7 6.6 58 40-97 23-84 (356)
313 PF07125 DUF1378: Protein of u 23.7 76 0.0017 24.1 2.4 26 4-29 33-58 (59)
314 COG0381 WecB UDP-N-acetylgluco 23.3 2.8E+02 0.006 30.0 7.5 87 65-155 22-115 (383)
315 TIGR03469 HonB hopene-associat 23.2 4.8E+02 0.01 27.9 9.6 105 52-156 44-161 (384)
316 TIGR03111 glyc2_xrt_Gpos1 puta 21.8 6E+02 0.013 27.8 10.2 99 52-155 53-158 (439)
317 PRK11498 bcsA cellulose syntha 21.2 7E+02 0.015 30.1 11.0 94 52-155 264-366 (852)
318 cd06437 CESA_CaSu_A2 Cellulose 20.8 6.4E+02 0.014 24.2 9.3 93 53-150 6-109 (232)
319 TIGR03472 HpnI hopanoid biosyn 20.1 6E+02 0.013 27.0 9.6 95 52-153 45-151 (373)
No 1
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-112 Score=901.03 Aligned_cols=548 Identities=50% Similarity=0.825 Sum_probs=467.9
Q ss_pred CchhhhHHHHHHHHhccCCCCCcccCCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEE
Q 007537 1 MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVF 80 (599)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv 80 (599)
|++++|++ ||...-++. +...++++|||+||++|.+||+|+|..+|++||||+|.|||+|+|+||..+||++|||+
T Consensus 1 M~~~k~~~--~~~~~~~~~--~~~~~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvf 76 (673)
T KOG1461|consen 1 MAKKKKRP--AALGETGKE--ENFREHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVF 76 (673)
T ss_pred CCcccCcc--cccccCccc--ccccccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEE
Confidence 67777662 222222222 22228999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcccCCCEEEEcCCeechhhHHHHHHHHHHhhccC
Q 007537 81 CCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKD 160 (599)
Q Consensus 81 ~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d 160 (599)
|+.|..||.+|+++++|.....+.+..|....++++|||||++++++++.+||+|++||+++|++|.++|++||+|++.|
T Consensus 77 c~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~D 156 (673)
T KOG1461|consen 77 CSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKED 156 (673)
T ss_pred ecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhC
Confidence 99999999999999999988777788888888999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEee
Q 007537 161 NNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240 (599)
Q Consensus 161 ~~a~mT~~~~~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyic 240 (599)
|+++|||++++.+ +|.+.+..++++|+.|.||++|++.. ..++.+.+++++|..++.+.+|+||+||+|+||
T Consensus 157 k~~iMTmv~k~~s-------t~~~~~~~~~avd~~T~~ll~yq~~~-~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIc 228 (673)
T KOG1461|consen 157 KDAIMTMVFKESS-------TRETTEQVVIAVDSRTSRLLHYQKCV-REKHDIQLDLSLFDSNDEVEVRNDLLDCQIDIC 228 (673)
T ss_pred ccceEEEEEeccc-------cccCCcceEEEEcCCcceEEeehhhc-ccccccccCHHHhcCCCcEEEEccCCCceeeEe
Confidence 9999999999975 36667788999999999999999732 345689999999999999999999999999999
Q ss_pred ChhhHhhhccccchhhHHHhhhhccccccccCCeeEEEecccc-ceeeccChhHHHHHHHHhhhccccccCCCCccCCCC
Q 007537 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNR 319 (599)
Q Consensus 241 sp~vl~lf~dnfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~-y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~ 319 (599)
||+|+.+|+|||||| +|.||++|+|..+++|++||+|.+.+. |+.||.+|++|..+|+|+|+||+||++|+.+|.+++
T Consensus 229 S~~V~sLF~dNFDyq-~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q 307 (673)
T KOG1461|consen 229 SPEVLSLFTDNFDYQ-TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQ 307 (673)
T ss_pred cHhHHHHhhhcccce-ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 999999999999999 799999999999999999999999865 999999999999999999999999999999999989
Q ss_pred cceeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEE
Q 007537 320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIV 399 (599)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI 399 (599)
++++.|.++|+++.+++.++|.++.+++||.+|.||.|++|.||+||.||.||.||+|.+|+||+||+||+||+|.+|+|
T Consensus 308 ~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii 387 (673)
T KOG1461|consen 308 TFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAII 387 (673)
T ss_pred eeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEECCCCEECCCCEECCCCCcCCChhhhhhccCCCCccccccccCcccCCCC---ccccC-CccCCCCCcCCCCcee
Q 007537 400 CDGVIMKAGAVLKPGVVLSFKPTVHDSDEELEYADNSSGTVEFSSIQGTADQSNG---EMTSE-SSEAHKPKLGTGGVGY 475 (599)
Q Consensus 400 ~~~~~Ig~~~~I~~g~vig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~g~~g~g~ 475 (599)
|++|+|+++|+|.+|||||+++.+++. ..+|.++++... +.+.+ .-....+-+|+.|.||
T Consensus 388 ~d~v~i~~~~~l~~g~vl~~~VVv~~~----------------~~l~~ns~~~~p~~eesdee~~~~~~l~siG~~G~gy 451 (673)
T KOG1461|consen 388 CDDVKIGEGAILKPGSVLGFGVVVGRN----------------FVLPKNSKVRQPTTEESDEEGLDDVKLKSIGPDGAGY 451 (673)
T ss_pred ecCcEeCCCcccCCCcEEeeeeEeCCC----------------ccccccccccCCcccccchhhccchheeeccCCccee
Confidence 999999999999999999999887753 134444333211 11000 0001112289999999
Q ss_pred eeeccCCCchhhhcccCCCCCcchhhhccccCcchhhhhccccccccCCCccccCCCCCCCCCCC-CCCCchhhHHHHHH
Q 007537 476 IWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNE-DSKDDSVYFEKEVE 554 (599)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~-~~~~~~~~F~~e~~ 554 (599)
+|.. ++.+||+|.+...+.++.++...+.++++++ + .|.++++++.+ +.++|+..|++||.
T Consensus 452 i~~~-~~~~dee~~~~~~~~~~~k~n~~~~~Dd~~s------e-----------~s~~~~edd~~~~in~d~~~F~~Ev~ 513 (673)
T KOG1461|consen 452 IWET-EDADDEEWKPLVPPSPNDKTNEAIEDDDSES------E-----------SSVSEEEDDASTDINDDTKDFEKEVL 513 (673)
T ss_pred eecc-cCcccccccccccCCcccccccccccccchh------h-----------ccccccccccccccCchhHHHHHHHH
Confidence 9975 3345667777666666655442222222110 0 11112222222 33457889999999
Q ss_pred HHHHHHHHcCCCCCceeeeecccccccCCChhHhhcccccC
Q 007537 555 ATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFF 595 (599)
Q Consensus 555 ~~~~r~~~~~~~~d~~~le~~~~r~a~n~~~~~~~~~~~~~ 595 (599)
+||+||+|||+++|+++||||||||||||+++||+++.-++
T Consensus 514 ~s~~ra~Een~~~D~~vlEINslRla~N~s~~ev~~av~~a 554 (673)
T KOG1461|consen 514 GSLQRAFEENSDMDNLVLEINSLRLAYNVSLKEVAGAVFMA 554 (673)
T ss_pred HHHHHHHHhccchHHHHHHHhhhHHhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986443
No 2
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-47 Score=401.55 Aligned_cols=347 Identities=24% Similarity=0.402 Sum_probs=282.8
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEE
Q 007537 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 28 ~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
.|+|||||+|+||||+|||..+|||||||+|+|||+|+|++|+.+|+++++|.++++.++|++|+.+..+ .++.+.+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~---~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEG---LGVRITY 77 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccc---cCCceEE
Confidence 4899999999999999999999999999999999999999999999999999999999999999998522 2578999
Q ss_pred EecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCC
Q 007537 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~ 186 (599)
+.+..++||+++|+.+ ..++. ++|++++||++++.++..++++|+++. +.+|+...... .+.+||
T Consensus 78 ~~e~~~lGTag~l~~a--~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~~-----~~~~~~~~~~~-----~~~~~G-- 143 (358)
T COG1208 78 VVEKEPLGTAGALKNA--LDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKG-----ALATIALTRVL-----DPSEFG-- 143 (358)
T ss_pred EecCCcCccHHHHHHH--HHhcCCCcEEEEECCeeeccCHHHHHHHHHhcc-----CccEEEEEecC-----CCCcCc--
Confidence 9999999999999966 55566 579999999999999999999999863 77788777765 235677
Q ss_pred ceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccc--cchhhHHHhhhhc
Q 007537 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRRHFVKG 264 (599)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dn--fd~q~ir~dfv~~ 264 (599)
++.++..++++..|.+||.... ..++++++|+|+|+|++++++... +++. .++++.
T Consensus 144 --vv~~~~~~~~v~~f~ekp~~~~-----------------~~~~~in~Giyi~~~~v~~~i~~~~~~~~~---~~~~~~ 201 (358)
T COG1208 144 --VVETDDGDGRVVEFREKPGPEE-----------------PPSNLINAGIYIFDPEVFDYIEKGERFDFE---EELLPA 201 (358)
T ss_pred --eEEecCCCceEEEEEecCCCCC-----------------CCCceEEeEEEEECHHHhhhcccCCcccch---hhHHHH
Confidence 7777754579999999983100 126789999999999999955432 3322 244444
Q ss_pred cccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhccc-cccCCCCc-cCCCCcceeeecceEECCCcEECCCCEE
Q 007537 265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWT-YPYVPDVK-FCGNRATKLERRGMYRALEIEQSRSAQV 342 (599)
Q Consensus 265 vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~-~p~~p~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~I 342 (599)
++. .+..++++... +||.+|+++++|.+++..+++++. ++..+... ...... ....+++|++.++.|++++.|
T Consensus 202 l~~---~~~~v~~~~~~-g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i 276 (358)
T COG1208 202 LAA---KGEDVYGYVFE-GYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALI 276 (358)
T ss_pred HHh---CCCcEEEEEeC-CeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEE
Confidence 443 23359999997 799999999999999999997442 22211110 000112 567789999999999999999
Q ss_pred CCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCC
Q 007537 343 GSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPT 422 (599)
Q Consensus 343 ~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~ 422 (599)
++.++||++|.|+.++.|.+|+|+++|.||+++.|.+|+|+.|++||+++ . |++ +.+|.++.|.+|.+++.+..
T Consensus 277 ~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~----i~d-~~~g~~~~i~~g~~~~~~~~ 350 (358)
T COG1208 277 GPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I----IGD-VVIGINSEILPGVVVGPGSV 350 (358)
T ss_pred CCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-e----ecc-eEecCceEEcCceEeCCCcc
Confidence 99999999999999999999999999999999999999999999999922 2 888 88888888888888888766
Q ss_pred cC
Q 007537 423 VH 424 (599)
Q Consensus 423 ~~ 424 (599)
++
T Consensus 351 ~~ 352 (358)
T COG1208 351 VE 352 (358)
T ss_pred cc
Confidence 55
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=9.1e-47 Score=411.03 Aligned_cols=366 Identities=19% Similarity=0.239 Sum_probs=274.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCc-chHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCC-----C
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS-----Q 100 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~-PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~-----~ 100 (599)
++|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|++...|.. .
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 81 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFG 81 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccC
Confidence 579999999999999999999999999999995 9999999999999999999999999999999998643221 1
Q ss_pred -CCceEEEEecC-----CcCCHHHHHHHHHHh--cc---cCCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEE
Q 007537 101 -PNFTVKTIESH-----NIISAGDALRLIYEQ--NV---IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMII 169 (599)
Q Consensus 101 -~~~~i~~v~~~-----~~~~~g~alr~~~~~--~~---i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~ 169 (599)
.++.+.+..+. .++|+|+|++..... .. +.++|+|++||++++.++.++++.|+++ ++.||+++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~-----~a~~ti~~ 156 (436)
T PLN02241 82 DGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRES-----GADITIAC 156 (436)
T ss_pred CCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHc-----CCCEEEEE
Confidence 12333332221 368999999865211 11 2467999999999999999999999886 48899999
Q ss_pred eecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCC-CCceEeeHHhHhcCC-ceEEEcCCccceeEeeChhhH-h
Q 007537 170 KKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEVL-S 246 (599)
Q Consensus 170 ~~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~-~~~~~i~~~~~~~~~-~~~ir~dL~d~gIyicsp~vl-~ 246 (599)
++.... +..+|| ++.+|. +++|++|.|+|..+ ...+.++.++|..++ .+..+.+++++|||+|+|+++ .
T Consensus 157 ~~v~~~---~~~~yg----vv~~d~-~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ 228 (436)
T PLN02241 157 LPVDES---RASDFG----LMKIDD-TGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLK 228 (436)
T ss_pred Eecchh---hcCcce----EEEECC-CCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHH
Confidence 887533 345777 788875 78999999998532 345777877776554 345567899999999999999 4
Q ss_pred hhccccchhhHHHhhhhccccccc-cCCeeEEEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeee
Q 007537 247 LFTDNFDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLER 325 (599)
Q Consensus 247 lf~dnfd~q~ir~dfv~~vl~~~~-~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~ 325 (599)
++.+.++. +.+|..++++..+ .|.+|++|.++ +||.+|+++++|+++++++|... |. ...+.... ..+..
T Consensus 229 ll~~~~~~---~~~~~~dil~~l~~~g~~v~~~~~~-gyw~dIg~~~~y~~a~~~~l~~~--~~--~~~~~~~~-~i~~~ 299 (436)
T PLN02241 229 LLRWRFPT---ANDFGSEIIPGAIKEGYNVQAYLFD-GYWEDIGTIKSFYEANLALTKQP--PK--FSFYDPDA-PIYTS 299 (436)
T ss_pred HHHhhccc---ccchhHHHHHHHhhcCCeEEEEeeC-CEEEECCCHHHHHHHHHHHhcCC--ch--hhccCCCC-ccccc
Confidence 66766543 2366666666644 45799999997 89999999999999999999842 11 00111110 00000
Q ss_pred cceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCC-------------------C
Q 007537 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDN-------------------V 386 (599)
Q Consensus 326 ~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~-------------------v 386 (599)
.. ..+++.+ .++.|.+ ++|+++|.|+ ++.|++|+||++|.||++|+|.+|+|+.+ +
T Consensus 300 -~~-~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~ 374 (436)
T PLN02241 300 -PR-FLPPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPI 374 (436)
T ss_pred -CC-CCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcce
Confidence 00 1122333 3556644 8899999998 88888999999999999999988888763 3
Q ss_pred EECCCcEEeceEECCCCEECCCCEECCCCEECC
Q 007537 387 IIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSF 419 (599)
Q Consensus 387 ~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~ 419 (599)
+||++|.|.+++|+++|.||++++|..+.-+..
T Consensus 375 ~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~ 407 (436)
T PLN02241 375 GIGENTKIRNAIIDKNARIGKNVVIINKDGVQE 407 (436)
T ss_pred EECCCCEEcceEecCCCEECCCcEEecccccCC
Confidence 799999998888888888888888764433333
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.2e-45 Score=401.18 Aligned_cols=356 Identities=19% Similarity=0.278 Sum_probs=269.4
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCc-chHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCC---CC
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ---PN 102 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~-PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~---~~ 102 (599)
++++|||||||+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+... |... .+
T Consensus 2 ~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~-~~~~~~~~g 80 (429)
T PRK02862 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQT-YNFDGFSGG 80 (429)
T ss_pred CcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcC-cCccccCCC
Confidence 478999999999999999999999999999998 999999999999999999999999999999999863 4211 12
Q ss_pred c-eEEEEecC----C-cCCHHHHHHHHHHhcccC----CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeec
Q 007537 103 F-TVKTIESH----N-IISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172 (599)
Q Consensus 103 ~-~i~~v~~~----~-~~~~g~alr~~~~~~~i~----~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~ 172 (599)
+ .+.+..+. . .+|+|+|++.. +.++. ++|+|++||+++++++..+++.|++.+ +.+|+++.+.
T Consensus 81 ~~~i~~~~~~~~~~~~~lGTa~al~~a--~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~-----a~~tl~~~~~ 153 (429)
T PRK02862 81 FVEVLAAQQTPENPSWFQGTADAVRKY--LWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETG-----ADITLAVLPV 153 (429)
T ss_pred EEEEeCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcC-----CCEEEEEEec
Confidence 1 22221121 1 27999999965 44453 459999999999999999999997753 7788888765
Q ss_pred CCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCC-CCceEeeHHhHhcCC-ceEEEcCCccceeEeeChhhHh-hhc
Q 007537 173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEVLS-LFT 249 (599)
Q Consensus 173 ~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~-~~~~~i~~~~~~~~~-~~~ir~dL~d~gIyicsp~vl~-lf~ 249 (599)
... +..+|| ++.+|+ +++|+.|.|+|... ...+.++.++|..++ +...+..++++|+|+|++++|. ++.
T Consensus 154 ~~~---~~~~yG----~i~~d~-~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~ 225 (429)
T PRK02862 154 DEK---DASGFG----LMKTDD-DGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN 225 (429)
T ss_pred Chh---hcccce----EEEECC-CCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHH
Confidence 432 355777 788885 68999999998632 345777887776554 3444567899999999999995 656
Q ss_pred cccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceE
Q 007537 250 DNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMY 329 (599)
Q Consensus 250 dnfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~ 329 (599)
..+.+.++..|+++.+ +.+.++++|.++ +||.+|+++++|.+++++++.. ..|...+.......+.+ ..
T Consensus 226 ~~~~~~~~~~dil~~l----~~~~~v~~~~~~-g~w~digt~~~y~~an~~l~~~----~~~~~~~~~~~~~i~~~--~~ 294 (429)
T PRK02862 226 KNPEYTDFGKEIIPEA----IRDYKVQSYLFD-GYWEDIGTIEAFYEANLALTQQ----PNPPFSFYDEKAPIYTR--AR 294 (429)
T ss_pred HCCChhhhHHHHHHHH----hccCcEEEEEeC-CEEEeCCCHHHHHHHHHHHHcC----CCCcccccCCCCceecc--CC
Confidence 5443333344555443 467789999986 8999999999999999998732 22322111111111111 11
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECC-------------------CCEECC
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWD-------------------NVIIED 390 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~-------------------~v~Ig~ 390 (599)
..+.+.+ .++.|. +++||++|.| +++.|++|+||++|.||++|+|.+|+|+. ++.||+
T Consensus 295 ~~~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~ 371 (429)
T PRK02862 295 YLPPSKL-LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGE 371 (429)
T ss_pred CCCCccc-cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECC
Confidence 2223333 256663 6899999999 89999999999999999999999999987 699999
Q ss_pred CcEEeceEECCCCEECCCCEEC
Q 007537 391 GCELRHVIVCDGVIMKAGAVLK 412 (599)
Q Consensus 391 ~~~I~~siI~~~~~Ig~~~~I~ 412 (599)
+|.|.+|+|+++|.||++++|.
T Consensus 372 ~~~i~~~ii~~~~~i~~~~~~~ 393 (429)
T PRK02862 372 GTTIKRAIIDKNARIGNNVRIV 393 (429)
T ss_pred CCEEEEEEECCCcEECCCcEEe
Confidence 9999999999998888877774
No 5
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-46 Score=376.93 Aligned_cols=372 Identities=26% Similarity=0.392 Sum_probs=288.9
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCc-hHHHHHHHHhcccCCCCCce
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~-~~~i~~~l~~~~w~~~~~~~ 104 (599)
...|||||+|+|.||||--++...|||||||+|+|||+|+|.+|.++|+++++|++... ...|+..|....-....+.-
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~ 86 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDY 86 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccE
Confidence 45799999999999999999999999999999999999999999999999999999874 56788888653211111122
Q ss_pred EEEE-ecCCcCCHHHHHHHHHHhcccCC-CEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecC-CCCCccCc
Q 007537 105 VKTI-ESHNIISAGDALRLIYEQNVIHG-DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSK-PSPITHQS 181 (599)
Q Consensus 105 i~~v-~~~~~~~~g~alr~~~~~~~i~~-dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~-~~~~~~~~ 181 (599)
+.+- ......|++++||.+. ..|+. ||++++||.|+++++..+++.+|.. |+...|++.-.... +-|. .+.
T Consensus 87 v~ip~~~~~d~gtadsLr~Iy--~kikS~DflvlsCD~Vtdv~l~~lvd~FR~~---d~slamli~~~~s~~~~pg-qk~ 160 (433)
T KOG1462|consen 87 VEIPTDDNSDFGTADSLRYIY--SKIKSEDFLVLSCDFVTDVPLQPLVDKFRAT---DASLAMLIGNALSEVPIPG-QKG 160 (433)
T ss_pred EEeecccccccCCHHHHhhhh--hhhccCCEEEEecccccCCCcHHHHHHHhcc---ChhHhHHhccccccccccC-ccc
Confidence 2221 1223679999999874 45776 9999999999999999999999964 34445544411111 1111 222
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhh
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHF 261 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~df 261 (599)
+-.....++.++++|+|+++.....+ ....+.|...+|+.+|.+.+.++|.|+|||.|+.++++++.++--..++|.+|
T Consensus 161 k~k~~~d~igi~e~t~rl~y~~~~~d-~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f 239 (433)
T KOG1462|consen 161 KKKQARDVIGINEDTERLAYSSDSAD-EEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADF 239 (433)
T ss_pred ccccccceeeeccccceeEEeecCCc-CCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccc
Confidence 22234458889998999877665433 35678999999999999999999999999999999999999887777778888
Q ss_pred hhccccccc----------------------c-------CCeeEEEecccc-ceeeccChhHHHHHHHHhhhccccccCC
Q 007537 262 VKGLLLDDI----------------------M-------GYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVP 311 (599)
Q Consensus 262 v~~vl~~~~----------------------~-------g~~I~~~~~~~~-y~~~V~s~~sY~~as~dil~rw~~p~~p 311 (599)
++.+..... . .-++|+|.++.+ ...|++|+-+|.++|++-+ | --++|
T Consensus 240 ~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~--~-~~l~~ 316 (433)
T KOG1462|consen 240 LPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKK--L-KKLCS 316 (433)
T ss_pred cchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHH--H-HHhcc
Confidence 887764322 1 146788888654 6779999999999997321 1 12445
Q ss_pred CCccCCCCcceeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCC
Q 007537 312 DVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG 391 (599)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~ 391 (599)
+..|..+ .....+.++..++||++|.|++++.|..|+||.+|.||++++|.+|+|++||+||+|
T Consensus 317 e~~~~k~----------------~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G 380 (433)
T KOG1462|consen 317 EAKFVKN----------------YVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDG 380 (433)
T ss_pred ccccccc----------------hhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCC
Confidence 5544322 011125667789999999999999999999999999999999999999999999999
Q ss_pred cEEeceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 392 CELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 392 ~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
|.|++||||.||.||+++.|. +|.||.+-.++
T Consensus 381 ~~IensIIg~gA~Ig~gs~L~-nC~Ig~~yvVe 412 (433)
T KOG1462|consen 381 VNIENSIIGMGAQIGSGSKLK-NCIIGPGYVVE 412 (433)
T ss_pred cceecceecccceecCCCeee-eeEecCCcEEc
Confidence 999999999999999999998 89999997655
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.2e-44 Score=388.24 Aligned_cols=354 Identities=18% Similarity=0.216 Sum_probs=267.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCc-chHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHh-cccCCC---C
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLEN-SEWFSQ---P 101 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~-PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~-~~w~~~---~ 101 (599)
+.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+++ .+|... .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRING 81 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCCC
Confidence 579999999999999999999999999999999 89999999999999999999999999999999975 456422 1
Q ss_pred CceEE--EEecCC---cCCHHHHHHHHHHhcccC----CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeec
Q 007537 102 NFTVK--TIESHN---IISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172 (599)
Q Consensus 102 ~~~i~--~v~~~~---~~~~g~alr~~~~~~~i~----~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~ 172 (599)
++.+. ++.+.. +.|+++|++.. +.++. ++|+|++||++++.++.++++.|++.. +.+|+++...
T Consensus 82 ~~~i~~~~~~~~~~~~~~Gta~al~~a--~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~-----~~~tl~~~~~ 154 (380)
T PRK05293 82 GVTILPPYSESEGGKWYKGTAHAIYQN--IDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKE-----ADVTIAVIEV 154 (380)
T ss_pred CEEEeCCcccCCCCcccCCcHHHHHHH--HHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcC-----CCEEEEEEEc
Confidence 23333 333332 47999999854 44453 348999999999999999999998753 5677776554
Q ss_pred CCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHh-hhccc
Q 007537 173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDN 251 (599)
Q Consensus 173 ~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~-lf~dn 251 (599)
... +..+|| ++.+|. +++|+.+.|||... ..++.++|+|+++++++. ++.+.
T Consensus 155 ~~~---~~~~yG----~v~~d~-~g~V~~~~eKp~~~-------------------~~~~~~~Giyi~~~~~l~~~l~~~ 207 (380)
T PRK05293 155 PWE---EASRFG----IMNTDE-NMRIVEFEEKPKNP-------------------KSNLASMGIYIFNWKRLKEYLIED 207 (380)
T ss_pred chh---hccccC----EEEECC-CCcEEEEEeCCCCC-------------------CcceeeeEEEEEcHHHHHHHHHHH
Confidence 322 456788 778885 58999999997421 145678999999999885 33321
Q ss_pred cchhhHHHhhhhccccccc-cCCeeEEEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceEE
Q 007537 252 FDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYR 330 (599)
Q Consensus 252 fd~q~ir~dfv~~vl~~~~-~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~ 330 (599)
........+|..++++..+ .+.++++|..+ +||.+++++++|.+++++++.+-.. ...+... . .......+
T Consensus 208 ~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~-g~w~digt~~~~~~a~~~~l~~~~~----~~~~~~~-~--~~~~~~~~ 279 (380)
T PRK05293 208 EKNPNSSHDFGKNVIPLYLEEGEKLYAYPFK-GYWKDVGTIESLWEANMELLRPENP----LNLFDRN-W--RIYSVNPN 279 (380)
T ss_pred hhcCCchhhhHHHHHHHHhhcCCeEEEEEeC-CEEEeCCCHHHHHHHHHHHcCCCch----hhhcCCC-C--ceecCCcC
Confidence 1000012244444444433 45789999987 7999999999999999999865311 1111110 0 00011223
Q ss_pred CCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCE
Q 007537 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV 410 (599)
Q Consensus 331 ~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~ 410 (599)
...+.|++++.| .++.||++|+|+ ..+.+|+||++|.||++|+|.+|+|+++++|+++|+|.+|+|+++++|+++++
T Consensus 280 ~~~~~i~~~~~i-~~~~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 280 LPPQYIAENAKV-KNSLVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred CCCCEECCCCEE-ecCEECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCE
Confidence 445667777777 477888888886 35779999999999999999999999999999999999999999999999999
Q ss_pred ECCC----CEECCCCCcCC
Q 007537 411 LKPG----VVLSFKPTVHD 425 (599)
Q Consensus 411 I~~g----~vig~~~~~~~ 425 (599)
|.++ .+||.++.+..
T Consensus 357 i~~~~~~~~~ig~~~~~~~ 375 (380)
T PRK05293 357 IGGGKEVITVIGENEVIGV 375 (380)
T ss_pred EcCCCceeEEEeCCCCCCC
Confidence 9876 77888887664
No 7
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4e-44 Score=387.27 Aligned_cols=347 Identities=17% Similarity=0.225 Sum_probs=255.0
Q ss_pred cCCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCc-chHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCc
Q 007537 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNF 103 (599)
Q Consensus 25 ~~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~-PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~ 103 (599)
.+++|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+.. .|... ++
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~-~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQ-TWRLS-GL 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHh-CcCcc-cc
Confidence 35789999999999999999999999999999998 99999999999999999999999999999999974 46422 12
Q ss_pred eEEEE---ecC------CcCCHHHHHHHHHHhcccCC---C-EEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEe
Q 007537 104 TVKTI---ESH------NIISAGDALRLIYEQNVIHG---D-FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK 170 (599)
Q Consensus 104 ~i~~v---~~~------~~~~~g~alr~~~~~~~i~~---d-fllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~ 170 (599)
.+.++ .++ ..+|+|+|++.. +.++.+ + |+|++||++++.+|.++++.|++.+ +.+|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lGta~al~~a--~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~-----~~~ti~~~ 152 (407)
T PRK00844 80 LGNYITPVPAQQRLGKRWYLGSADAIYQS--LNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESG-----AGVTVAAI 152 (407)
T ss_pred CCCeEEECCcccCCCCCcccCCHHHHHHH--HHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcC-----CcEEEEEE
Confidence 22222 111 158999999854 445532 3 8999999999999999999998753 67888887
Q ss_pred ecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhc
Q 007537 171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFT 249 (599)
Q Consensus 171 ~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~ 249 (599)
+.... +..+|| ++.+|+ +++|..|.+||....... ..-.+.++.+|+|++++++| +++.
T Consensus 153 ~~~~~---~~~~~G----vv~~d~-~g~v~~~~eKp~~~~~~~------------~~~~~~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 153 RVPRE---EASAFG----VIEVDP-DGRIRGFLEKPADPPGLP------------DDPDEALASMGNYVFTTDALVDALR 212 (407)
T ss_pred ecchH---HcccCC----EEEECC-CCCEEEEEECCCCccccc------------CCCCCcEEEeEEEEEeHHHHHHHHH
Confidence 64322 455778 888886 689999999975321100 00124678999999999996 5554
Q ss_pred ccc----chhhHHHhhhhccccccccCCeeEEEecc-----------ccceeeccChhHHHHHHHHhhhccccccCCCCc
Q 007537 250 DNF----DYQHLRRHFVKGLLLDDIMGYKIFTHEIH-----------SSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVK 314 (599)
Q Consensus 250 dnf----d~q~ir~dfv~~vl~~~~~g~~I~~~~~~-----------~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~ 314 (599)
... ...++..|+++.++ ...++++|... .+||.+|+++++|.++++++|.+-.. ...
T Consensus 213 ~~~~~~~~~~~~~~dii~~l~----~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~----~~~ 284 (407)
T PRK00844 213 RDAADEDSSHDMGGDIIPRLV----ERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV----FNL 284 (407)
T ss_pred HhhcCCcccccchhhHHHHHh----ccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCc----ccc
Confidence 311 11112234544444 34578888652 48999999999999999999975311 011
Q ss_pred cCCCC-cce---eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECC
Q 007537 315 FCGNR-ATK---LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIED 390 (599)
Q Consensus 315 ~~~~~-~~~---~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~ 390 (599)
+.... .+. ...+..+++.... ..+.++++||++|.|+ ++.|.+|+||++|.||++|+|.+|+|+++++|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~ 359 (407)
T PRK00844 285 YNREWPIYTSSPNLPPAKFVDGGGR----VGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGR 359 (407)
T ss_pred CCCCCcccccCCCCCCceEecCCCc----cceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECC
Confidence 11100 000 0111222222111 2234679999999998 9999999999999999999999999999999999
Q ss_pred CcEEeceEECCCCEECCCCEECC
Q 007537 391 GCELRHVIVCDGVIMKAGAVLKP 413 (599)
Q Consensus 391 ~~~I~~siI~~~~~Ig~~~~I~~ 413 (599)
+|+|.+|+|+++++|+++++|+.
T Consensus 360 ~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 360 GAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred CCEEEeeEECCCCEECCCCEECC
Confidence 99999999998888888877764
No 8
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.5e-44 Score=357.24 Aligned_cols=334 Identities=21% Similarity=0.291 Sum_probs=260.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
+.|+|+||.||+||||+|||..+||||+|++|+|||++.+++|.++||++|++.+++..+++..|+.+.+ ...-|++|.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y-~~~lgVei~ 86 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY-GKELGVEIL 86 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh-hhccceEEE
Confidence 6899999999999999999999999999999999999999999999999999999999887777775522 222356666
Q ss_pred EEecCCcCCHHHHHHHHHHhccc--CC--CEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcc
Q 007537 107 TIESHNIISAGDALRLIYEQNVI--HG--DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i--~~--dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (599)
+-.+.++.++++-+..+ |+++ .. +|++++||+++.+++.+|+++|++++ +..|+++.++. .+++
T Consensus 87 ~s~eteplgtaGpl~la--R~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~g-----ae~TI~~t~vd-----epSk 154 (371)
T KOG1322|consen 87 ASTETEPLGTAGPLALA--RDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHG-----AEITIVVTKVD-----EPSK 154 (371)
T ss_pred EEeccCCCcccchHHHH--HHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcC-----CceEEEEEecc-----Cccc
Confidence 66666666544443322 2222 23 59999999999999999999999985 89999999887 4679
Q ss_pred cCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhh
Q 007537 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFV 262 (599)
Q Consensus 183 ~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv 262 (599)
|| ++.+|+++|+|.+|.|||.. +.++.++.|||+++|+|+..+. .+.- -|-
T Consensus 155 yG----vv~~d~~~grV~~F~EKPkd-------------------~vsnkinaGiYi~~~~vL~ri~-~~pt-----Sie 205 (371)
T KOG1322|consen 155 YG----VVVIDEDTGRVIRFVEKPKD-------------------LVSNKINAGIYILNPEVLDRIL-LRPT-----SIE 205 (371)
T ss_pred cc----eEEEecCCCceeEehhCchh-------------------hhhccccceEEEECHHHHhHhh-hccc-----chh
Confidence 99 99999889999999999852 1245677999999999998766 2211 144
Q ss_pred hccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceEECCCcEECCCCEE
Q 007537 263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQV 342 (599)
Q Consensus 263 ~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I 342 (599)
+.+++....++++++|.++ +||.||+++++|+.+-.-+++.. |.. ...++.+++.|
T Consensus 206 kEifP~~a~~~~l~a~~l~-gfWmDIGqpkdf~~g~~~Yl~s~-----~~~------------------t~~r~~p~~~i 261 (371)
T KOG1322|consen 206 KEIFPAMAEEHQLYAFDLP-GFWMDIGQPKDFLTGFSFYLRSL-----PKY------------------TSPRLLPGSKI 261 (371)
T ss_pred hhhhhhhhhcCceEEEecC-chhhhcCCHHHHHHHHHHHHhhC-----ccc------------------CCccccCCccc
Confidence 5666666788999999998 99999999999999855444421 110 01111222333
Q ss_pred CCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCC
Q 007537 343 GSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 343 ~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
.+++.+.+-..||.+|.|+ +++||.+|+|+.||+|.+|.|+.++.++..+.|..++++.++.||-+++|...|+||.++
T Consensus 262 ~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 262 VGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred cccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 3444444444455555553 368899999999999999999999999999999999999999999999999999999998
Q ss_pred CcCCC
Q 007537 422 TVHDS 426 (599)
Q Consensus 422 ~~~~~ 426 (599)
.+.+.
T Consensus 342 ~V~d~ 346 (371)
T KOG1322|consen 342 IVADE 346 (371)
T ss_pred EEecc
Confidence 87753
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2.5e-44 Score=384.37 Aligned_cols=344 Identities=19% Similarity=0.327 Sum_probs=250.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCc-chHHHHHHHHHHCCCcEEEEEccCchH-HHHHHHHh-cccCCCC--
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSK-QVIDYLEN-SEWFSQP-- 101 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~-PlI~y~Le~L~~~gv~eV~vv~~~~~~-~i~~~l~~-~~w~~~~-- 101 (599)
+.|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+ +|++|+.+ .+|....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 468999999999999999999999999999999 999999999999999999999999876 99999976 3564321
Q ss_pred -CceEEEEecCCcCCHHHHHHHHHHhcccC----CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCC
Q 007537 102 -NFTVKTIESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (599)
Q Consensus 102 -~~~i~~v~~~~~~~~g~alr~~~~~~~i~----~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~ 176 (599)
++.+.+..+...+++|++.....++.++. ++|+|++||++++++|.+++++|++++ +.+|+++.+....
T Consensus 81 ~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~-----a~~tl~~~~v~~~- 154 (369)
T TIGR02092 81 DGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETG-----KDITVVYKKVKPA- 154 (369)
T ss_pred CcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcC-----CCEEEEEEecCHH-
Confidence 11122333344555555433334455552 459999999999999999999998764 7899998775421
Q ss_pred CccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhccccchh
Q 007537 177 ITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQ 255 (599)
Q Consensus 177 ~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~dnfd~q 255 (599)
.+.+|| .++.+|. ++++..+.+++.... ..++.+|||+++++++ .++.+.+...
T Consensus 155 --~~~~~g---~vv~~~~-~g~v~~~~~~~~~~~-------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 155 --DASEYD---TILRFDE-SGKVKSIGQNLNPEE-------------------EENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred --HccccC---cEEEEcC-CCCEEeccccCCCCC-------------------cceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 234554 1455654 567777654322110 1235689999999976 4443322111
Q ss_pred hHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceEECCCcE
Q 007537 256 HLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIE 335 (599)
Q Consensus 256 ~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~ 335 (599)
..+++.++++..+.+..+++|..+ +||.+|+++++|.++++++|++|.++... .......+. .+.....+.
T Consensus 210 --~~~~~~d~i~~~~~~~~v~~~~~~-g~w~dIgt~~~l~~a~~~~l~~~~~~~~~----~~~~~~~~~--~~~~~~p~~ 280 (369)
T TIGR02092 210 --KLTSLEELIRENLKELNINAYEYT-GYLANINSVKSYYKANMDLLDPQNFQSLF----YSSQGPIYT--KVKDEPPTY 280 (369)
T ss_pred --ccccHHHHHHHHhccCcEEEEecC-CceeEcCCHHHHHHHHHHHhCCcchhhhc----CCCCCceee--ccCCCCCcE
Confidence 112233344433345689999887 89999999999999999999999764311 000000001 111224566
Q ss_pred ECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECC
Q 007537 336 QSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP 413 (599)
Q Consensus 336 i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~ 413 (599)
|++++.| ++++||++|+|+ +.|.+|+||++|.||++|+|.+|+|++++.|+++|.|.+|+|+++++|+++++|..
T Consensus 281 i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 281 YAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAG 355 (369)
T ss_pred EcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCC
Confidence 7777777 788999999997 46899999999999999999999999999999999999999999999998888853
No 10
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.9e-43 Score=382.17 Aligned_cols=349 Identities=17% Similarity=0.239 Sum_probs=254.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcc-hHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCC---CC
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVP-MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ---PN 102 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~P-lI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~---~~ 102 (599)
+.++|||||||+||||+|||..+||||+||+|+| ||+|+|++|.++|+++|+|+++++.+++.+|+.+ .|... .+
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~-~~~~~~~~~~ 92 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQR-GWSFFREELG 92 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHh-hhcccccCCC
Confidence 5689999999999999999999999999999997 9999999999999999999999999999999975 35321 11
Q ss_pred ceEEEEe-------cCCcCCHHHHHHHHHHhcccC----CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEee
Q 007537 103 FTVKTIE-------SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKK 171 (599)
Q Consensus 103 ~~i~~v~-------~~~~~~~g~alr~~~~~~~i~----~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~ 171 (599)
..+.++. ++.++|+|+|++.. +.++. ++|+|++||++++.+|.++++.|++++ +.+|+++.+
T Consensus 93 ~~i~i~~~~~~~~~e~~~lGTa~al~~a--~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~-----~~~tl~~~~ 165 (425)
T PRK00725 93 EFVDLLPAQQRVDEENWYRGTADAVYQN--LDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESG-----ADCTVACLE 165 (425)
T ss_pred CeEEEeCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcC-----CCEEEEEEe
Confidence 1222221 22358999999865 44453 349999999999999999999998763 778888766
Q ss_pred cCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhcc
Q 007537 172 SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTD 250 (599)
Q Consensus 172 ~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~d 250 (599)
.... ...+|| ++.+|+ +++|..|.|||..+.. + ... -.+.++++|||+|+++++ .++.+
T Consensus 166 ~~~~---~~~~yG----~v~~d~-~~~V~~~~EKp~~~~~-~-------~~~----~~~~l~n~GIYi~~~~~L~~~L~~ 225 (425)
T PRK00725 166 VPRE---EASAFG----VMAVDE-NDRITAFVEKPANPPA-M-------PGD----PDKSLASMGIYVFNADYLYELLEE 225 (425)
T ss_pred cchh---hcccce----EEEECC-CCCEEEEEECCCCccc-c-------ccC----ccceEEEeeEEEEeHHHHHHHHHH
Confidence 5322 456777 888886 5899999999752211 0 000 114578999999999987 44432
Q ss_pred -ccchhhHHHhhhhccccccccCCeeEEEeccc----------cceeeccChhHHHHHHHHhhhccccccCCCCc-cCCC
Q 007537 251 -NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHS----------SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVK-FCGN 318 (599)
Q Consensus 251 -nfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~----------~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~-~~~~ 318 (599)
.++.+. ..+|..++++..+...++++|.++. +||.+|+++++|.+++++++... |... +...
T Consensus 226 ~~~~~~~-~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-----~~~~~~~~~ 299 (425)
T PRK00725 226 DAEDPNS-SHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-----PELDLYDRN 299 (425)
T ss_pred hhcCCCc-cchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-----chhhccCCC
Confidence 111111 1244444444444556899998853 69999999999999999999743 2211 1111
Q ss_pred C-cce---eeecceEECCCcEECCC--CEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCc
Q 007537 319 R-ATK---LERRGMYRALEIEQSRS--AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC 392 (599)
Q Consensus 319 ~-~~~---~~~~~~~~~~~~~i~~~--~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~ 392 (599)
. -++ ...+..|+. .+.+ +.+ .+++||.+|.| +++.|.+|+||++|.||++|+|.+|+||++|+||++|
T Consensus 300 ~~i~t~~~~~~~~~~~~----~~~~~~~~~-~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~ 373 (425)
T PRK00725 300 WPIWTYQEQLPPAKFVF----DRSGRRGMA-INSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSC 373 (425)
T ss_pred CccccCCCCCCCCeEec----cCCCCcceE-EeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCC
Confidence 0 000 111122211 1122 223 48999999999 7899999999999999999999999999999999999
Q ss_pred EEeceEECCCCEECCCCEECCCC
Q 007537 393 ELRHVIVCDGVIMKAGAVLKPGV 415 (599)
Q Consensus 393 ~I~~siI~~~~~Ig~~~~I~~g~ 415 (599)
+|.+|+|+++++|+++++|+.++
T Consensus 374 ~i~~~ii~~~~~i~~~~~i~~~~ 396 (425)
T PRK00725 374 RLRRCVIDRGCVIPEGMVIGEDP 396 (425)
T ss_pred EEeeEEECCCCEECCCCEECCCC
Confidence 99999988888777665555443
No 11
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=364.81 Aligned_cols=345 Identities=21% Similarity=0.326 Sum_probs=270.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCC-cchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhc-ccCCC-CCc
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQ-PNF 103 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n-~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~-~w~~~-~~~ 103 (599)
..+-|+|||+|.|+||.|||..++||-+|++| +.|||++|.++.++|+..|+|++.+....+.+||+.. .|... .+=
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~ 83 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNG 83 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccC
Confidence 46789999999999999999999999999999 8999999999999999999999999999999999873 57432 211
Q ss_pred eEEEEec-----C--CcCCHHHHHHHHHHhcccC---CC-EEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeec
Q 007537 104 TVKTIES-----H--NIISAGDALRLIYEQNVIH---GD-FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172 (599)
Q Consensus 104 ~i~~v~~-----~--~~~~~g~alr~~~~~~~i~---~d-fllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~ 172 (599)
.+.++.. . ...|+++|+++ +..++. .+ +++++||+|+++|++++++.|.+. +|.+|+++.++
T Consensus 84 ~v~ilp~~~~~~~~~wy~Gtadai~Q--nl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~-----gadiTv~~~~V 156 (393)
T COG0448 84 GVFILPAQQREGGERWYEGTADAIYQ--NLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIES-----GADVTVAVKEV 156 (393)
T ss_pred cEEEeCchhccCCCcceeccHHHHHH--hHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEEEC
Confidence 2333331 1 23678888874 333332 23 899999999999999999999997 49999999999
Q ss_pred CCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHh-hhccc
Q 007537 173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDN 251 (599)
Q Consensus 173 ~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~-lf~dn 251 (599)
+.. ..+++| ++.+|+ +++|+.|.|||.... + -+.|..+||||++.++|. ++.+.
T Consensus 157 p~~---eas~fG----im~~D~-~~~i~~F~eKp~~~~-------------~----~~~laSMgiYIf~~~~L~~~L~~~ 211 (393)
T COG0448 157 PRE---EASRFG----VMNVDE-NGRIIEFVEKPADGP-------------P----SNSLASMGIYIFNTDLLKELLEED 211 (393)
T ss_pred ChH---hhhhcC----ceEECC-CCCEEeeeeccCcCC-------------c----ccceeeeeeEEEcHHHHHHHHHHH
Confidence 866 678899 899996 899999999986310 0 023788999999999887 34332
Q ss_pred cchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceEEC
Q 007537 252 FDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRA 331 (599)
Q Consensus 252 fd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~~ 331 (599)
-.-..-..||.+.+++..+..+.+++|+++ +||.+|+|.++|+++|+|+++- .|+..+.......+++.. ..
T Consensus 212 ~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~-gYw~dVgTi~syy~aNmdLl~~-----~~~~~lyd~~w~IyT~~~--~~ 283 (393)
T COG0448 212 AKDPNSSHDFGKDIIPKLLERGKVYAYEFS-GYWRDVGTIDSYYEANMDLLSP-----QPELNLYDRNWPIYTKNK--NL 283 (393)
T ss_pred hcccCccccchHHHHHHHHhcCCEEEEecc-chhhhcccHHHHHHhhHHhcCC-----CCcccccCCCCceeecCC--CC
Confidence 211122468999998876666669999998 8999999999999999999982 233322222111111111 12
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEE
Q 007537 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411 (599)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I 411 (599)
+.+.+..++.+ .++.|+.||.|.. .|.+|+|+++++|+.+++|.+|+|+++|.||+||+|+++||..+|+|++|++|
T Consensus 284 pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i 360 (393)
T COG0448 284 PPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVI 360 (393)
T ss_pred CCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEE
Confidence 33445555555 6899999999974 89999999999999999999999999999999999999999999888887777
Q ss_pred CCC
Q 007537 412 KPG 414 (599)
Q Consensus 412 ~~g 414 (599)
+.+
T Consensus 361 ~~~ 363 (393)
T COG0448 361 GGD 363 (393)
T ss_pred cCC
Confidence 644
No 12
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-43 Score=341.69 Aligned_cols=355 Identities=18% Similarity=0.325 Sum_probs=284.1
Q ss_pred CCcEEEEEeCC--CCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHC-CCcEEEEEccCchHHHHHHHHhcccCCCCCc
Q 007537 27 QPLQAILLADS--FTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNF 103 (599)
Q Consensus 27 ~~l~aVILA~g--~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~-gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~ 103 (599)
++++||||.+| +||||+||+.+.||||+||+|+|||.|.++.+.+. |..+|+++.-+..+.+.+|+....... .+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~--~~ 78 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEF--KV 78 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhc--cc
Confidence 46799999998 79999999999999999999999999999999996 899999998888888999987632111 35
Q ss_pred eEEEEecCCcCCHHHHHHHHHHhcccCC---CEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccC
Q 007537 104 TVKTIESHNIISAGDALRLIYEQNVIHG---DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (599)
Q Consensus 104 ~i~~v~~~~~~~~g~alr~~~~~~~i~~---dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~ 180 (599)
.|.|..+..+.|+|+.|..+.. +.+.+ .|+|+++|+-++++|++|++.|+..+ +.+||+..++.+. ..
T Consensus 79 pvrYL~E~~plGtaGgLyhFrd-qIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g-----~~~tll~tkvs~e---~a 149 (407)
T KOG1460|consen 79 PVRYLREDNPLGTAGGLYHFRD-QILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYG-----GIGTLLVTKVSRE---QA 149 (407)
T ss_pred chhhhccCCCCCcccceeehhh-HHhcCCCceEEEEecceecCCcHHHHHHHHhhcC-----CceEEEEEEecHh---Hh
Confidence 6888999999999999987632 33333 39999999999999999999998764 8999999998866 66
Q ss_pred cccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccch------
Q 007537 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY------ 254 (599)
Q Consensus 181 ~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~------ 254 (599)
+.|| .++-||.|++|+||.+||.. +-+|.++||||+++|+++..+.+-|.-
T Consensus 150 snfG----~lV~dP~t~evlHYveKPsT-------------------fvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~ 206 (407)
T KOG1460|consen 150 SNFG----CLVEDPSTGEVLHYVEKPST-------------------FVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLE 206 (407)
T ss_pred hccC----eeeecCCcCceEEeecCcch-------------------hhhcccceeEEEecHHHHHHHHHHHHHHHhhhh
Confidence 7888 78899999999999999862 237899999999999999987764321
Q ss_pred --------hhHHHhhhh---ccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhcc--ccccCCCCccC-CCCc
Q 007537 255 --------QHLRRHFVK---GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW--TYPYVPDVKFC-GNRA 320 (599)
Q Consensus 255 --------q~ir~dfv~---~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw--~~p~~p~~~~~-~~~~ 320 (599)
+..-.||++ ++|......+++|+|..+ ++|..+.++.+-..+|+-+|+++ ++|. .+. ++-.
T Consensus 207 ~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~-~fW~QiKtagsal~as~lYLs~yk~t~p~----~Lak~pgt 281 (407)
T KOG1460|consen 207 VEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETT-DFWSQIKTAGSALYASRLYLSQYKRTHPA----RLAKGPGT 281 (407)
T ss_pred hhhcccccCCCccceEEeechhhhhhcCCCceEEEecc-cHHHHhccccceeehhhhHHHHHhhcCch----hhcCCCCC
Confidence 111123432 344444567899999997 89999999999999999999954 4432 121 1112
Q ss_pred ceeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec----
Q 007537 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH---- 396 (599)
Q Consensus 321 ~~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~---- 396 (599)
-....+++||++++.++++++||+|+.||++++||+|++|.+|+|-++|.|.+|+.+-+|+|+-.+.||.-++++.
T Consensus 282 ~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~ 361 (407)
T KOG1460|consen 282 QAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVE 361 (407)
T ss_pred CceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccc
Confidence 2467889999999999999999999999999999999999999999999999998888888888888888777742
Q ss_pred ----------eEECCCCEECCCCEECCCCEECCCC
Q 007537 397 ----------VIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 397 ----------siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
++.|..|.+++.+.|- +|++-.+-
T Consensus 362 ~s~~~~~~a~Tilga~v~v~dev~v~-~s~vlp~k 395 (407)
T KOG1460|consen 362 PSPNLPFAALTILGADVSVEDEVIVL-NSIVLPNK 395 (407)
T ss_pred cCCCCCcceeEEecccceecceeEEe-eeeEecCC
Confidence 5666666666666665 45544443
No 13
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=4.4e-42 Score=366.05 Aligned_cols=344 Identities=20% Similarity=0.245 Sum_probs=254.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCc-chHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCC--CceEEE
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQP--NFTVKT 107 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~-PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~--~~~i~~ 107 (599)
|||||||+|+||+|||..+|||||||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.. .|.... ...+.+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 79 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQR-GWDFDGFIDGFVTL 79 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHh-ccCccCccCCCEEE
Confidence 69999999999999999999999999999 89999999999999999999999999999999985 454221 112333
Q ss_pred Ee-------cCCcCCHHHHHHHHHHhcccC----CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCC
Q 007537 108 IE-------SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (599)
Q Consensus 108 v~-------~~~~~~~g~alr~~~~~~~i~----~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~ 176 (599)
+. ++...|++++++.. ..++. ++|+|++||++++.++.++++.|++. ++.+|+++.+....
T Consensus 80 ~~~~~~~~~~~~~~Gt~~al~~a--~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~-----~~~~ti~~~~~~~~- 151 (361)
T TIGR02091 80 LPAQQRESGTDWYQGTADAVYQN--LDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIES-----GADVTIACIPVPRK- 151 (361)
T ss_pred eCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHc-----CCCEEEEEEecChH-
Confidence 21 12247999999854 33332 34999999999999999999999765 35677776654311
Q ss_pred CccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhccc-cch
Q 007537 177 ITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDN-FDY 254 (599)
Q Consensus 177 ~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~dn-fd~ 254 (599)
....|| ++.+|. +++|..|.+||..+...... + ...+.++|||+++|+++ .++... .+.
T Consensus 152 --~~~~~g----~v~~d~-~~~v~~~~ekp~~~~~~~~~--------~----~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 212 (361)
T TIGR02091 152 --EASRFG----VMQVDE-DGRIVDFEEKPANPPSIPGM--------P----DFALASMGIYIFDKDVLKELLEEDADDP 212 (361)
T ss_pred --hccccc----EEEECC-CCCEEEEEECCCCccccccc--------c----cccEEeeeEEEEcHHHHHHHHHHHhhcC
Confidence 344666 788885 67899999987422111000 0 12478999999999997 344321 111
Q ss_pred hhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceEECCCc
Q 007537 255 QHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEI 334 (599)
Q Consensus 255 q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~~~~~ 334 (599)
+. ..+|..++++..+..+++++|.++ +||.+|+++++|..++++++.++... ..+... .. ......++.+.+
T Consensus 213 ~~-~~~~~~d~l~~l~~~~~v~~~~~~-~~w~digt~~~~~~a~~~~l~~~~~~----~~~~~~-~~-~~~~~~~~~~~~ 284 (361)
T TIGR02091 213 ES-SHDFGKDIIPRALEEGSVQAYLFS-GYWRDVGTIDSFWEANMDLVSVVPPF----DLYDRK-WP-IYTYNEFLPPAK 284 (361)
T ss_pred Cc-ccccHHHHHHHHhhcCceEEEeeC-CEEEECCCHHHHHHHHHHHhCCCchh----hccccC-Cc-eecCCCCCCCce
Confidence 11 123334444444455689999997 89999999999999999999875211 011110 00 001122445566
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEEC
Q 007537 335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK 412 (599)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~ 412 (599)
.+++++.| +++.||++|+|+++ .|.+|+||++|+||++|+|.+|+|++++.|+.+|+|.+|+|+++++|+++++|+
T Consensus 285 ~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 285 FVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 67777765 67899999999987 889999999999999999999999999999999999999999998888888876
No 14
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=1.8e-40 Score=352.51 Aligned_cols=343 Identities=17% Similarity=0.245 Sum_probs=260.3
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccC-chHHHHHHHHh-cccCCCCCceEEE
Q 007537 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLEN-SEWFSQPNFTVKT 107 (599)
Q Consensus 30 ~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~-~~~~i~~~l~~-~~w~~~~~~~i~~ 107 (599)
+|||||+|.|+||+|+|..+||+|+|++|+|||+|+|++|.++|+++|+|++++ +.+++.+|+.. ..| ++.+.+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~----~~~~~~ 76 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERF----GAKITY 76 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhccccc----CceEEE
Confidence 589999999999999999999999999999999999999999999999999999 89999999986 345 356777
Q ss_pred EecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCC
Q 007537 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~ 186 (599)
+.+....|++++++.. +.++. ++|++++||++++.++.++++.|++.. +.+|+++.+.. ++.+|+
T Consensus 77 ~~~~~~~G~~~al~~a--~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~~-----~d~ti~~~~~~-----~~~~~g-- 142 (353)
T TIGR01208 77 IVQGEPLGLAHAVYTA--RDFLGDDDFVVYLGDNLIQDGISRFVKSFEEKD-----YDALILLTKVR-----DPTAFG-- 142 (353)
T ss_pred EECCCCCCHHHHHHHH--HHhcCCCCEEEEECCeecCccHHHHHHHHHhcC-----CCcEEEEEECC-----ChhhCe--
Confidence 7777788999999965 45554 469999999999999999999998753 67788876643 334566
Q ss_pred ceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhhhccc
Q 007537 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLL 266 (599)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~vl 266 (599)
++.++ +.++|..+.++|... .+++..+|+|++++.+++++.+-..... ...++.+++
T Consensus 143 --~~~~~-~~~~v~~~~ekp~~~-------------------~~~~~~~Giy~~~~~l~~~l~~~~~~~~-~e~~l~d~l 199 (353)
T TIGR01208 143 --VAVLE-DGKRILKLVEKPKEP-------------------PSNLAVVGLYMFRPLIFEAIKNIKPSWR-GELEITDAI 199 (353)
T ss_pred --EEEEc-CCCcEEEEEECCCCC-------------------CccceEEEEEEECHHHHHHHHhcCCCCC-CcEEHHHHH
Confidence 66665 357899999987421 1356789999999998887753221000 011223333
Q ss_pred cccc-cCCeeEEEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceEECCCcEECCCCEECCC
Q 007537 267 LDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSF 345 (599)
Q Consensus 267 ~~~~-~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~ 345 (599)
+..+ .|.+|++|.++ +||.+|+++++|.++++.++.+....+.+ . .+.....+++++++++.| .++.|+++
T Consensus 200 ~~l~~~g~~v~~~~~~-g~w~digt~~dl~~a~~~ll~~~~~~~~~---i---~~~~~i~~~~~i~~~~~i-~~~~i~~~ 271 (353)
T TIGR01208 200 QWLIEKGYKVGGSKVT-GWWKDTGKPEDLLDANRLILDEVEREVQG---V---DDESKIRGRVVVGEGAKI-VNSVIRGP 271 (353)
T ss_pred HHHHHcCCeEEEEEeC-cEEEeCCCHHHHHHHHHHHHhhcccccCC---c---CCCCEEcCCEEECCCCEE-eCCEEECC
Confidence 3322 46789999997 89999999999999999999863211100 0 111233456777777777 66677677
Q ss_pred cEECCCCEECCCCEE-eceEECCCCEECCCcEEeceEECCCCEECCC-cEEeceEECCCCEECCCCEECC--CCEECCCC
Q 007537 346 TVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG-CELRHVIVCDGVIMKAGAVLKP--GVVLSFKP 421 (599)
Q Consensus 346 ~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~-~~I~~siI~~~~~Ig~~~~I~~--g~vig~~~ 421 (599)
+.||++|.|+ ++.| .+|+||++|.|+ ++.|.+|+|+++++|+.+ +.+.+++|++++.|+++++|.. +.++|..+
T Consensus 272 ~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~ 349 (353)
T TIGR01208 272 AVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYS 349 (353)
T ss_pred cEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCc
Confidence 7777777776 3444 567777777776 677789999999999988 4889999999999999998874 46777766
Q ss_pred Cc
Q 007537 422 TV 423 (599)
Q Consensus 422 ~~ 423 (599)
.+
T Consensus 350 ~~ 351 (353)
T TIGR01208 350 QV 351 (353)
T ss_pred ee
Confidence 54
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.7e-37 Score=337.96 Aligned_cols=340 Identities=16% Similarity=0.204 Sum_probs=253.3
Q ss_pred cCCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCce
Q 007537 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 25 ~~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~ 104 (599)
+.++|+|||||+|+|+||+| .+||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++++|+.. ..
T Consensus 4 ~~~~~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~~ 72 (481)
T PRK14358 4 QTRPLDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------SG 72 (481)
T ss_pred ccCCceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------CC
Confidence 34689999999999999997 58999999999999999999999999999999999988899999863 23
Q ss_pred EEEEecCCcCCHHHHHHHHHHhcccC---CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCcc
Q 007537 105 VKTIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITH 179 (599)
Q Consensus 105 i~~v~~~~~~~~g~alr~~~~~~~i~---~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~ 179 (599)
+.++.++...|++++++... ..+. .+|++++||+ +.+.+|..+++.|++.. +.+|+++.+.. .
T Consensus 73 i~~v~~~~~~Gt~~al~~~~--~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~-----~~~ti~~~~~~-----~ 140 (481)
T PRK14358 73 VAFARQEQQLGTGDAFLSGA--SALTEGDADILVLYGDTPLLRPDTLRALVADHRAQG-----SAMTILTGELP-----D 140 (481)
T ss_pred cEEecCCCcCCcHHHHHHHH--HHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcC-----CeEEEEEEEcC-----C
Confidence 56666777789999988553 3342 4599999998 77889999999998753 67888877654 2
Q ss_pred CcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhh---Hhhhccccchhh
Q 007537 180 QSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEV---LSLFTDNFDYQH 256 (599)
Q Consensus 180 ~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~v---l~lf~dnfd~q~ 256 (599)
..+|| ++.+|+ +++|..|.|||+..... ...+++.+|+|++++++ ++.+..... .
T Consensus 141 ~~~yG----~v~~d~-~g~v~~~~Ek~~~~~~~---------------~~~~~~n~Giyi~~~~~~~~~~~i~~~~~--~ 198 (481)
T PRK14358 141 ATGYG----RIVRGA-DGAVERIVEQKDATDAE---------------KAIGEFNSGVYVFDARAPELARRIGNDNK--A 198 (481)
T ss_pred CCCce----EEEECC-CCCEEEEEECCCCChhH---------------hhCCeEEEEEEEEchHHHHHHHhcCCCcc--C
Confidence 34688 788885 57999999987532100 01245679999999655 444432111 0
Q ss_pred HHHhhhhccccccc-cCCeeEEEeccccceeeccChhHHHHHHHH-hhhcccc-ccCCCCccCCCCcceeeecceEECCC
Q 007537 257 LRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKD-IIQRWTY-PYVPDVKFCGNRATKLERRGMYRALE 333 (599)
Q Consensus 257 ir~dfv~~vl~~~~-~g~~I~~~~~~~~y~~~V~s~~sY~~as~d-il~rw~~-p~~p~~~~~~~~~~~~~~~~~~~~~~ 333 (599)
...++.++++..+ .|.++++|.+. +||.-++....|+.++++ ++++-.+ ...............+..++++++++
T Consensus 199 -ge~~l~d~i~~~~~~g~~i~~~~~~-~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~ 276 (481)
T PRK14358 199 -GEYYLTDLLGLYRAGGAQVRAFKLS-DPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRD 276 (481)
T ss_pred -CeEEHHHHHHHHHHCCCeEEEEecC-CHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCC
Confidence 0122233333322 45689999887 788888888888776654 5543211 00000000001122233577889999
Q ss_pred cEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEE
Q 007537 334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVL 411 (599)
Q Consensus 334 ~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I 411 (599)
+.|+++|.|.+++.||++|.|+++|.|++|+||++|.|+++++|.+++|++++.|+.++.|. +++||+++.|++++.|
T Consensus 277 ~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 277 VTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999986 6888888888886554
No 16
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-36 Score=332.00 Aligned_cols=349 Identities=17% Similarity=0.215 Sum_probs=244.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
++++|||||+|.|+||++ .+||+|+|++|+|||+|+|++|.++|++++++++++..+++.+|+.+. ..+.
T Consensus 2 ~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-------~~i~ 71 (459)
T PRK14355 2 NNLAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-------GDVS 71 (459)
T ss_pred CcceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-------CceE
Confidence 468999999999999985 789999999999999999999999999999999999989999999752 1355
Q ss_pred EEecCCcCCHHHHHHHHHHhcccC---CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCc
Q 007537 107 TIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~---~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (599)
++.+...+|++++++.. +..+. +.|++++||+ +.+.+|..+++.|+.. ++.+|++..+.. ++.
T Consensus 72 ~~~~~~~~Gt~~al~~a--~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-----~~~~~v~~~~~~-----~~~ 139 (459)
T PRK14355 72 FALQEEQLGTGHAVACA--APALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-----GAAVTVLTARLE-----NPF 139 (459)
T ss_pred EEecCCCCCHHHHHHHH--HHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-----CCcEEEEEEEcC-----CCC
Confidence 66667778999998865 44453 3499999998 6788999999999764 367777776643 344
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhccccchhhHHHh
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRH 260 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~dnfd~q~ir~d 260 (599)
+|+ .+.+|+ +++|..+.|+|...... -.+++..+|+|+++++++ +++..-.....-...
T Consensus 140 ~~g----~v~~d~-~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~ 199 (459)
T PRK14355 140 GYG----RIVRDA-DGRVLRIVEEKDATPEE---------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEY 199 (459)
T ss_pred cCC----EEEEcC-CCCEEEEEEcCCCChhH---------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCce
Confidence 667 666775 67899999876311000 013567899999999864 444321100000112
Q ss_pred hhhccccccc-cCCeeEEEeccccc--eeeccChhHHHHHHHHhhhccccccC-CCCccCCCCcceeeecceEECCCcEE
Q 007537 261 FVKGLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQ 336 (599)
Q Consensus 261 fv~~vl~~~~-~g~~I~~~~~~~~y--~~~V~s~~sY~~as~dil~rw~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~i 336 (599)
++..+++..+ .|.++++|.++ +| |.+++++++|+++++.++.+-...+. +...+... ......++++++.++.|
T Consensus 200 ~~~d~i~~l~~~g~~v~~~~~~-~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~-~~~~i~~~v~ig~~~~I 277 (459)
T PRK14355 200 YLTDIVAMAAAEGLRCLAFPVA-DPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDP-ETTYIDRGVVIGRDTTI 277 (459)
T ss_pred eHHHHHHHHHHCCCeEEEEEcC-CHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECC-CceEECCCeEEcCCCEE
Confidence 2334444333 46789999987 56 89999999999997755543211010 00001111 11234456677777777
Q ss_pred CCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEECCCC
Q 007537 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGV 415 (599)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~ 415 (599)
+++|.|++++.||++|.|+++++|.+|+||++|+|+.+++|.+++|++++.||++|+|. +++|+++++||.++.++ .+
T Consensus 278 ~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~-~~ 356 (459)
T PRK14355 278 YPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK-KI 356 (459)
T ss_pred eCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc-CC
Confidence 77777777788888888888888878888888888888888888888888888777774 56777777777665443 33
Q ss_pred EECCC
Q 007537 416 VLSFK 420 (599)
Q Consensus 416 vig~~ 420 (599)
+||.+
T Consensus 357 ~ig~~ 361 (459)
T PRK14355 357 VMGEG 361 (459)
T ss_pred EECCC
Confidence 34443
No 17
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.8e-35 Score=323.37 Aligned_cols=335 Identities=16% Similarity=0.176 Sum_probs=243.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
..+.|||||+|.|+||+| .+||+|+|++|+|||+|+|++|.++|+++++|++++..+++.+++.... ..+.
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~------~~~~ 73 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA------PEVD 73 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC------CccE
Confidence 467899999999999997 6899999999999999999999999999999999988889999886521 1345
Q ss_pred EEecCCcCCHHHHHHHHHHhcccC----CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccC
Q 007537 107 TIESHNIISAGDALRLIYEQNVIH----GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~----~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~ 180 (599)
++.++...|++++++... ..+. ++|++++||+ +...+|.++++.|++.+ +.+|++..+.. ++
T Consensus 74 ~~~~~~~~Gt~~si~~al--~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~-----~~~~v~~~~~~-----~p 141 (482)
T PRK14352 74 IAVQDEQPGTGHAVQCAL--EALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEG-----NAVTVLTTTLD-----DP 141 (482)
T ss_pred EEeCCCCCCcHHHHHHHH--HHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcC-----CeEEEEEeecC-----CC
Confidence 566677789999888553 3343 3499999998 56789999999998753 56676665543 44
Q ss_pred cccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhh-hccccchhhHHH
Q 007537 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSL-FTDNFDYQHLRR 259 (599)
Q Consensus 181 ~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~l-f~dnfd~q~ir~ 259 (599)
.+|+ ++..|+ +++|..+.|||...... ...+++.+|+|++++++|.. +..-+....-..
T Consensus 142 ~~yg----~~~~~~-~g~V~~~~EKp~~~~~~---------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e 201 (482)
T PRK14352 142 TGYG----RILRDQ-DGEVTAIVEQKDATPSQ---------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGE 201 (482)
T ss_pred CCCC----EEEECC-CCCEEEEEECCCCCHHH---------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCc
Confidence 5777 666664 67999999987532110 01345789999999999853 322111000011
Q ss_pred hhhhccccccc-cCCeeEEEeccccceeeccChhHH------HHHHHHhhhccccccCCCCccCCCCcceeeecceEECC
Q 007537 260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSY------DIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRAL 332 (599)
Q Consensus 260 dfv~~vl~~~~-~g~~I~~~~~~~~y~~~V~s~~sY------~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~~~ 332 (599)
.++.++++..+ .|.+|++|.++ +||.+++.+..| ..++++++..|..+.. . +.. ....+..+++++++
T Consensus 202 ~~l~d~i~~l~~~g~~V~~~~~~-g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~--~-~~~-~~~~~i~~~v~ig~ 276 (482)
T PRK14352 202 LYLTDVLAIAREAGHRVGAHHAD-DSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGV--T-IVD-PATTWIDVDVTIGR 276 (482)
T ss_pred EeHHHHHHHHHHCCCeEEEEecC-CcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCC--E-EEC-CCeEEEeCCEEECC
Confidence 22344444333 45689999987 899999988887 5566777777643210 0 000 11245668899999
Q ss_pred CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCC
Q 007537 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAG 408 (599)
Q Consensus 333 ~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~ 408 (599)
++.|++++.|+++++||++|.|++++.|.+++||++|.|+. +.+.+++|++++.||++|.|. +++|++++.||.+
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~ 352 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAF 352 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCc
Confidence 99999999999999999999999999999888888888864 667777777777777777775 6666666655543
No 18
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=7.5e-36 Score=295.82 Aligned_cols=214 Identities=49% Similarity=0.854 Sum_probs=184.0
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccC-CCC-CceEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWF-SQP-NFTVK 106 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~-~~~-~~~i~ 106 (599)
|+|||||+|+|+||+|||..+|||||||+|+|||+|+|++|.++|+++|+|+++++.+++++|+++..|. ... ++.+.
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999875432 211 24677
Q ss_pred EEecCCcCCHHHHHHHHHHhcccCCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCC
Q 007537 107 TIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~ 186 (599)
++.+++..++|+|++.+.++..+.++|++++||++++.++.++++.|+++++.++++.||+++++..+. .+++++..
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~---~~~~~~~~ 157 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPP---HRTRRTGE 157 (217)
T ss_pred EEeCCCcCccchHHHHHhhccccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCc---cccccCCC
Confidence 777778889999999887777778889999999999999999999999976666789999999887633 22345544
Q ss_pred ceEEEEeCCCCeEEEeeccCCCCC-CceEeeHHhHhcCCceEEEcCCccceeEeeChhhH
Q 007537 187 ELFMAIDPNTKQLLYYEDKADHSK-GTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (599)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~~~-~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl 245 (599)
..++.+|+++++|+.+.++|..+. ..+.+++.++..++.+.+++||+|+|||||+|+|+
T Consensus 158 ~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 158 EFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 557888877799999999987433 34678999999999999999999999999999875
No 19
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=1e-34 Score=318.22 Aligned_cols=348 Identities=17% Similarity=0.211 Sum_probs=252.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
|+|||||+|+|+||+| .+||+|+|++|+|||+|+|+.|.++|+++++|++++..+.+++++.+ | .+.++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--~------~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--R------DVNWV 69 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--C------CcEEE
Confidence 7899999999999997 78999999999999999999999999999999999988899999875 2 24445
Q ss_pred ecCCcCCHHHHHHHHHHhcccC--CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccC
Q 007537 109 ESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i~--~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g 184 (599)
.+....|++++++.. ...+. +.|+++.||. +...++..+++.|++. .+|++..+.. +..+|+
T Consensus 70 ~~~~~~G~~~ai~~a--~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~-------~~~~~~~~~~-----~~~~~g 135 (451)
T TIGR01173 70 LQAEQLGTGHAVLQA--LPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN-------GITLLTAKLP-----DPTGYG 135 (451)
T ss_pred EcCCCCchHHHHHHH--HHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC-------CEEEEEEecC-----CCCCCC
Confidence 556667888888865 44553 3499999998 6677899999998653 2445554443 334566
Q ss_pred CCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhccccchhhHHHhhhh
Q 007537 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVK 263 (599)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~dnfd~q~ir~dfv~ 263 (599)
++.+|+ +++|..+.|+|...... . ...++.+|+|+++++++ .++.+.++-..-...++.
T Consensus 136 ----~v~~d~-~g~v~~~~ek~~~~~~~------~---------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~ 195 (451)
T TIGR01173 136 ----RIIREN-DGKVTAIVEDKDANAEQ------K---------AIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLT 195 (451)
T ss_pred ----EEEEcC-CCCEEEEEEcCCCChHH------h---------cCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHH
Confidence 667775 67899999886421100 0 02356789999999985 444332110000011222
Q ss_pred ccccccc-cCCeeEEEeccccc--eeeccChhHHHHHHHHhhhccccccC-CCCccCCCCcceeeecceEECCCcEECCC
Q 007537 264 GLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQSRS 339 (599)
Q Consensus 264 ~vl~~~~-~g~~I~~~~~~~~y--~~~V~s~~sY~~as~dil~rw~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 339 (599)
.+++..+ .|.++++|... +| |.+++++..|..+...+..+-...+. +...+. ........+++.+++++.|+++
T Consensus 196 ~~~~~l~~~g~~v~~~~~~-~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ig~~~~i~~~ 273 (451)
T TIGR01173 196 DVIALAVADGETVRAVQVD-DSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLR-DPARFDIRGTVEIGRDVEIDPN 273 (451)
T ss_pred HHHHHHHHCCCeEEEEEcC-ChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEe-cCCeEEECCccEECCCCEEcCC
Confidence 3333322 46789999886 66 89999999988776544432111110 111111 1223355677889999999999
Q ss_pred CEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEECCCCEEC
Q 007537 340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLS 418 (599)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~vig 418 (599)
+.|++++.||++|.|++++.|.+++||++|.|+++++|.+++|++++.||++|.|. +++|+++|+|++++.+. +++||
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~-~~~ig 352 (451)
T TIGR01173 274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETK-NARIG 352 (451)
T ss_pred eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeec-CcEEC
Confidence 99999999999999999999999999999999999999999999999999999997 68899898888887665 55666
Q ss_pred CCCCcC
Q 007537 419 FKPTVH 424 (599)
Q Consensus 419 ~~~~~~ 424 (599)
.++.+.
T Consensus 353 ~~~~i~ 358 (451)
T TIGR01173 353 KGSKAG 358 (451)
T ss_pred CCcEec
Confidence 555443
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.5e-34 Score=317.44 Aligned_cols=351 Identities=15% Similarity=0.153 Sum_probs=243.8
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEE
Q 007537 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 28 ~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
.+.|||||||.|+||++ .+||+|+|++|+|||+|+++.|...++++++|++++..+.+++++.. ..+.+
T Consensus 5 ~~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~--------~~~~~ 73 (456)
T PRK14356 5 TTGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD--------EDARF 73 (456)
T ss_pred ceeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc--------cCceE
Confidence 58999999999999983 78999999999999999999999999999999999888888888754 23455
Q ss_pred EecCCcCCHHHHHHHHHHhcccC----CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCc
Q 007537 108 IESHNIISAGDALRLIYEQNVIH----GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~----~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (599)
+.++...|++++++.. ...+. +.|++++||+ +...++..+++.|+. +.+|++..+.. .+.
T Consensus 74 v~~~~~~Gt~~al~~a--~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-------~~~~l~~~~~~-----~~~ 139 (456)
T PRK14356 74 VLQEQQLGTGHALQCA--WPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAAG-------ADLAFMTLTLP-----DPG 139 (456)
T ss_pred EEcCCCCCcHHHHHHH--HHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHhc-------CCEEEEEEEcC-----CCC
Confidence 6666778999988865 33342 3499999998 667789999988752 45566665543 334
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhcccc-chhhHHHh
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF-DYQHLRRH 260 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnf-d~q~ir~d 260 (599)
.|| ++.. +.++|..+.|+++.... . ..+ ..+++.+|||+++++++..+.+.. +...-...
T Consensus 140 ~~g----~v~~--~~g~V~~~~ek~~~~~~-------~--~~~----~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~ 200 (456)
T PRK14356 140 AYG----RVVR--RNGHVAAIVEAKDYDEA-------L--HGP----ETGEVNAGIYYLRLDAVESLLPRLTNANKSGEY 200 (456)
T ss_pred Cce----EEEE--cCCeEEEEEECCCCChH-------H--hhh----hcCeEEEEEEEEEHHHHHHHHHhccCcccCCcE
Confidence 666 5444 36899999988652100 0 000 145678999999999875432211 10000011
Q ss_pred hhhcccccc-ccCCeeEEEecccc-ceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceEECCCcEECC
Q 007537 261 FVKGLLLDD-IMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSR 338 (599)
Q Consensus 261 fv~~vl~~~-~~g~~I~~~~~~~~-y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~ 338 (599)
++..+++.. ..|.+++++...+. +|.+|+++++|..+...+..+....+.+..............+++++++++.|..
T Consensus 201 ~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~ 280 (456)
T PRK14356 201 YITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYG 280 (456)
T ss_pred EHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeC
Confidence 222333322 15678999988632 5799999999998776555442211111110000001122334455555666666
Q ss_pred CCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEECCCCEE
Q 007537 339 SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVL 417 (599)
Q Consensus 339 ~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~vi 417 (599)
.+.|++++.||++|.|+++++|.+++||++|.|+++++|.+++|++++.||++|+|. +++|+++++||.++.|. +++|
T Consensus 281 ~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~-~~~i 359 (456)
T PRK14356 281 PCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMK-KAVL 359 (456)
T ss_pred CcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceee-eeEe
Confidence 666667788999999999999999999999999999999999999999999999986 78888888888887664 3555
Q ss_pred CCCCCc
Q 007537 418 SFKPTV 423 (599)
Q Consensus 418 g~~~~~ 423 (599)
+.++.+
T Consensus 360 ~~~~~i 365 (456)
T PRK14356 360 GKGAKA 365 (456)
T ss_pred cCCcEe
Confidence 555443
No 21
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.1e-34 Score=312.14 Aligned_cols=344 Identities=13% Similarity=0.180 Sum_probs=244.1
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceE
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i 105 (599)
++.|+|||||+|.|+||++ .+||+|+|++|+|||+|++++|..+|+++++|++++..+++++++.. ..+
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~--------~~~ 71 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD--------EPL 71 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc--------CCc
Confidence 3469999999999999984 68999999999999999999999999999999999888899999864 134
Q ss_pred EEEecCCcCCHHHHHHHHHHhcccC--CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCc
Q 007537 106 KTIESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (599)
Q Consensus 106 ~~v~~~~~~~~g~alr~~~~~~~i~--~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (599)
.++.++...|++++++.. ..++. +.|++++||. +.+.++..+++.|++. . ++++..+.. ++.
T Consensus 72 ~~i~~~~~~Gt~~al~~a--~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~------~-~~i~~~~~~-----~~~ 137 (456)
T PRK09451 72 NWVLQAEQLGTGHAMQQA--APFFADDEDILMLYGDVPLISVETLQRLRDAKPQG------G-IGLLTVKLD-----NPT 137 (456)
T ss_pred EEEECCCCCCcHHHHHHH--HHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcC------C-EEEEEEEcC-----CCC
Confidence 556666778999999865 33443 3499999998 7788999999887543 1 233333332 334
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHh-hhccccchhhHHHh
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQHLRRH 260 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~-lf~dnfd~q~ir~d 260 (599)
+|| ++ .+. +++|..+.|||...... ...++..+|+|+++++++. ++........-..+
T Consensus 138 ~yG----~v-~~~-~g~V~~~~EKp~~~~~~---------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~ 196 (456)
T PRK09451 138 GYG----RI-TRE-NGKVVGIVEQKDATDEQ---------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGEY 196 (456)
T ss_pred Cce----EE-Eec-CCeEEEEEECCCCChHH---------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCce
Confidence 677 54 443 67999999997521110 1135678999999998775 44322111000123
Q ss_pred hhhccccccc-cCCeeEEEecc-----ccc--eeeccChhHHHHHHH--HhhhccccccCCCCccCCCCcceeeecceEE
Q 007537 261 FVKGLLLDDI-MGYKIFTHEIH-----SSY--AARIDNYRSYDIVSK--DIIQRWTYPYVPDVKFCGNRATKLERRGMYR 330 (599)
Q Consensus 261 fv~~vl~~~~-~g~~I~~~~~~-----~~y--~~~V~s~~sY~~as~--dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~ 330 (599)
++.++++..+ .|.++++|... .+| |.+++++++|+++++ .+|..-.....|. .....+++.+
T Consensus 197 ~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~--------~~~~~~~~~i 268 (456)
T PRK09451 197 YITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPA--------RFDLRGTLTH 268 (456)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCC--------EEEECCcEEE
Confidence 3444444433 45789998632 256 566999999999874 2332111001111 1112346778
Q ss_pred CCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCC
Q 007537 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGA 409 (599)
Q Consensus 331 ~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~ 409 (599)
+.++.|+++|.|.+++.||++|.|++++.|.+|+||++|.|++++.|.+|+|+++++|+++|.|. +++|+++++||+++
T Consensus 269 g~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~ 348 (456)
T PRK09451 269 GRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFV 348 (456)
T ss_pred CCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccce
Confidence 88888888888888888888888888888888888888888888888888888888888888886 78888888888877
Q ss_pred EECCCCEECCCCCcC
Q 007537 410 VLKPGVVLSFKPTVH 424 (599)
Q Consensus 410 ~I~~g~vig~~~~~~ 424 (599)
.|. +++|+.++.+.
T Consensus 349 ~i~-~~~i~~~~~~~ 362 (456)
T PRK09451 349 EMK-KARLGKGSKAG 362 (456)
T ss_pred eee-ceeeCCCCccC
Confidence 665 45555555443
No 22
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.9e-34 Score=292.59 Aligned_cols=346 Identities=19% Similarity=0.232 Sum_probs=221.7
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEE
Q 007537 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 28 ~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
.+.+||||+|.||||+. .+||.|.||+|+||++|+++.....+.+++.++.++.++++++.+.+. .++.+
T Consensus 2 ~~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~~v~~ 71 (460)
T COG1207 2 SLSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------DDVEF 71 (460)
T ss_pred CceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------cCceE
Confidence 57899999999999997 899999999999999999999999999999999999999999999751 25788
Q ss_pred EecCCcCCHHHHHHHHHHhccc----CCCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCc
Q 007537 108 IESHNIISAGDALRLIYEQNVI----HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i----~~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (599)
+.|.+++|||+|+... +..+ .+++|+++||+ ++...|+.|++.|.... +.+|++..+.. +++
T Consensus 72 v~Q~eqlGTgHAV~~a--~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~-----~~~tvLt~~~~-----dP~ 139 (460)
T COG1207 72 VLQEEQLGTGHAVLQA--LPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHG-----AAATVLTAELD-----DPT 139 (460)
T ss_pred EEecccCChHHHHHhh--hhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcC-----CceEEEEEEcC-----CCC
Confidence 8899999999999965 5555 24599999999 77788999999998764 67777776654 456
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhh-HHHh
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQH-LRRH 260 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~-ir~d 260 (599)
.|| -++.+. +++|..+.|..+.+... -.-..+++|+|+|....|.-+-....-.+ -...
T Consensus 140 GYG----RIvr~~-~g~V~~IVE~KDA~~ee---------------k~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY 199 (460)
T COG1207 140 GYG----RIVRDG-NGEVTAIVEEKDASEEE---------------KQIKEINTGIYAFDGAALLRALPKLSNNNAQGEY 199 (460)
T ss_pred Ccc----eEEEcC-CCcEEEEEEcCCCCHHH---------------hcCcEEeeeEEEEcHHHHHHHHHHhccccccCcE
Confidence 777 455664 67888888876522110 01123567777777665443222111000 0122
Q ss_pred hhhccccc-cccCCeeEEEeccc-cceeeccChhHHHHHHHHhhhc----cccccCCCCccCCCCcceeeecceEECCCc
Q 007537 261 FVKGLLLD-DIMGYKIFTHEIHS-SYAARIDNYRSYDIVSKDIIQR----WTYPYVPDVKFCGNRATKLERRGMYRALEI 334 (599)
Q Consensus 261 fv~~vl~~-~~~g~~I~~~~~~~-~y~~~V~s~~sY~~as~dil~r----w~~p~~p~~~~~~~~~~~~~~~~~~~~~~~ 334 (599)
++.+++.- ...|.++.++...+ .-...|++-..+.++.+-+.+| |+-- ...+. ++...+.+..+.+++++
T Consensus 200 YLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~---GVtl~-dP~t~~i~~dv~ig~Dv 275 (460)
T COG1207 200 YLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLA---GVTLI-DPATTYIRGDVEIGRDV 275 (460)
T ss_pred eHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHc---CcEEe-CCCeEEEcCcEEECCce
Confidence 33444332 22578999998873 2456777777666665544443 3211 00010 11223344445555555
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEECC
Q 007537 335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKP 413 (599)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~ 413 (599)
.|.+++.|.+++.||.+|+||++|+|.+|.||+++.|-..++|++|.|++++.||+.++|+ ++.|++++.||..+-+.
T Consensus 276 vI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK- 354 (460)
T COG1207 276 VIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVK- 354 (460)
T ss_pred EEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEe-
Confidence 5555555555555555555555555555555555555555555555555555555555554 45555555555544444
Q ss_pred CCEECCC
Q 007537 414 GVVLSFK 420 (599)
Q Consensus 414 g~vig~~ 420 (599)
++.||.+
T Consensus 355 ~a~ig~g 361 (460)
T COG1207 355 KATIGKG 361 (460)
T ss_pred cccccCC
Confidence 3334444
No 23
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.6e-33 Score=302.38 Aligned_cols=352 Identities=14% Similarity=0.157 Sum_probs=238.7
Q ss_pred cCCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCce
Q 007537 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 25 ~~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~ 104 (599)
.++.+.|||||+|.|+||++ .+||+|+|++|+|||+|+|++|..+|+++|+|++++..+.+.+++... +..
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~------~~~ 72 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI------APD 72 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc------CCC
Confidence 45678999999999999985 689999999999999999999999999999999999888899888642 123
Q ss_pred EEEEecCCcCCHHHHHHHHHHhccc---CCCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCcc
Q 007537 105 VKTIESHNIISAGDALRLIYEQNVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITH 179 (599)
Q Consensus 105 i~~v~~~~~~~~g~alr~~~~~~~i---~~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~ 179 (599)
+.++.+....|++++++.. ...+ .++|++++||. +....+..+++.+.. ++.++++..+.. +
T Consensus 73 ~~~~~~~~~~G~~~sl~~a--~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~------~~~~~i~~~~~~-----~ 139 (446)
T PRK14353 73 AEIFVQKERLGTAHAVLAA--REALAGGYGDVLVLYGDTPLITAETLARLRERLAD------GADVVVLGFRAA-----D 139 (446)
T ss_pred ceEEEcCCCCCcHHHHHHH--HHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc------CCcEEEEEEEeC-----C
Confidence 4445556677888888754 3334 34599999998 556678888874432 244555554433 3
Q ss_pred CcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhccccchhhHH
Q 007537 180 QSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLR 258 (599)
Q Consensus 180 ~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~dnfd~q~ir 258 (599)
..+|+ ++.++ +++|..+.|||...... ....+...|+|+++++.+ +++....+-+.-.
T Consensus 140 ~~~~g----~~~~~--~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 198 (446)
T PRK14353 140 PTGYG----RLIVK--GGRLVAIVEEKDASDEE---------------RAITLCNSGVMAADGADALALLDRVGNDNAKG 198 (446)
T ss_pred CCcce----EEEEC--CCeEEEEEECCCCChHH---------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCC
Confidence 34666 55553 67999999987421100 012355689999998765 4433211100001
Q ss_pred Hhhhhccccccc-cCCeeEEEeccccceeeccChhHHHHHHHHhhhcc-ccccCCCCccCCCCcceeeecceEECCCcEE
Q 007537 259 RHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW-TYPYVPDVKFCGNRATKLERRGMYRALEIEQ 336 (599)
Q Consensus 259 ~dfv~~vl~~~~-~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~i 336 (599)
..++..+++..+ .|.+++++..+..+|.+|+++++|..+..-+..+- ...+.-...+... ...+......+++++.|
T Consensus 199 ~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I~~~~~i 277 (446)
T PRK14353 199 EYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAP-ETVFFSYDTVIGRDVVI 277 (446)
T ss_pred cEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCC-CeEEECCceEECCCCEE
Confidence 122333333322 56789999887568999999999988875443321 0000000001110 11233456677778888
Q ss_pred CCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCCEECCCC
Q 007537 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV 415 (599)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~ 415 (599)
++++.|++++.||++|.|++++.|.+++||++|+||+++.|. +++|+++++||++|.|.+++|++++.|+..+.++ ++
T Consensus 278 ~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~-~~ 356 (446)
T PRK14353 278 EPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIG-DA 356 (446)
T ss_pred CCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEc-Cc
Confidence 888888888888888888888888889999999999999995 8999999999999998888888887776655443 33
Q ss_pred EECCCC
Q 007537 416 VLSFKP 421 (599)
Q Consensus 416 vig~~~ 421 (599)
+||.++
T Consensus 357 ~ig~~~ 362 (446)
T PRK14353 357 TIGAGA 362 (446)
T ss_pred EEcCCc
Confidence 344333
No 24
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.1e-32 Score=296.89 Aligned_cols=333 Identities=16% Similarity=0.145 Sum_probs=212.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
+.++|||||+|.|+||+| .+||+|+|++|+|||+|++++|..+ +++++|++++..+++++|+.+. + ..+.
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~-~-----~~v~ 70 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEY-F-----PGVI 70 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhc-C-----CceE
Confidence 357899999999999997 7999999999999999999999987 7899999999999999999752 1 1244
Q ss_pred EEec--CCcCCHHHHHHHHHHhcccCCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccC
Q 007537 107 TIES--HNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (599)
Q Consensus 107 ~v~~--~~~~~~g~alr~~~~~~~i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g 184 (599)
++.+ +...|++++++.+ + ...+.|++++||...- ....++.|.+. ++.+|+.+.+.. ++.+|+
T Consensus 71 ~~~~~~~~~~gt~~al~~~--~-~~~d~vlv~~gD~p~~--~~~~l~~l~~~-----~~~~~v~~~~~~-----~~~~~g 135 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGI--E-PKHERVLILNGDMPLV--EKDELEKLLEN-----DADIVMSVFHLA-----DPKGYG 135 (430)
T ss_pred EEEecCccCCCcHHHHhhc--c-cCCCeEEEEECCccCC--CHHHHHHHHhC-----CCCEEEEEEEcC-----CCccCc
Confidence 4433 3457889998763 2 1234599999998321 12334444432 245666666543 234566
Q ss_pred CCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccc-hhhHHHhhhh
Q 007537 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD-YQHLRRHFVK 263 (599)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd-~q~ir~dfv~ 263 (599)
.+..| ++++..+.+++..... . ....+..+|+|+++++++..+..... ...-...++.
T Consensus 136 ----~v~~d--~g~v~~i~e~~~~~~~-------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~ 194 (430)
T PRK14359 136 ----RVVIE--NGQVKKIVEQKDANEE-------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLT 194 (430)
T ss_pred ----EEEEc--CCeEEEEEECCCCCcc-------------c--ccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehh
Confidence 45554 5799999887642110 0 01346789999999999885532110 0000112233
Q ss_pred ccccccc-cCCeeEEEeccccceeeccChhHHHHHHHHhhhccccc--------cCCCCccCCCCcceeeecceEECCCc
Q 007537 264 GLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYP--------YVPDVKFCGNRATKLERRGMYRALEI 334 (599)
Q Consensus 264 ~vl~~~~-~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p--------~~p~~~~~~~~~~~~~~~~~~~~~~~ 334 (599)
++++..+ .|.+++++..+.++|.+|+++++|..+.+.+..+-... ..|...+.. .-....++++++.++
T Consensus 195 d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~--~~~~i~g~~~ig~~~ 272 (430)
T PRK14359 195 DIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIE--SGVEFEGECELEEGV 272 (430)
T ss_pred hHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEEC--CCcEEcCceEECCCC
Confidence 3333322 46889999987679999999999999975544431100 011111111 111223445566666
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCE----------ECCCcEEeceEECCCCE
Q 007537 335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVI----------IEDGCELRHVIVCDGVI 404 (599)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~----------Ig~~~~I~~siI~~~~~ 404 (599)
.|+++|.|+ ++.||++|.|++ ++|.+|+||++|.|+++++|.+|+|+++|. ||+++.|.+|+||++|.
T Consensus 273 ~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ 350 (430)
T PRK14359 273 RILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTN 350 (430)
T ss_pred EECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCE
Confidence 666666664 666677777655 555677888888888888777777777764 34444455566666666
Q ss_pred ECCCC
Q 007537 405 MKAGA 409 (599)
Q Consensus 405 Ig~~~ 409 (599)
||.++
T Consensus 351 ig~~~ 355 (430)
T PRK14359 351 IGAGT 355 (430)
T ss_pred ECCCc
Confidence 66543
No 25
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.2e-32 Score=299.24 Aligned_cols=348 Identities=18% Similarity=0.209 Sum_probs=237.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
+.++|||||+|.|+||++ .+||+|+|++|+|||+|+|++|.++|+++++|+++++.+++++|+.. + +.
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-------~--~~ 68 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-------R--SE 68 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-------C--cE
Confidence 367899999999999985 78999999999999999999999999999999999998999998864 1 23
Q ss_pred EEecCCcCCHHHHHHHHHHhcccC---CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCc
Q 007537 107 TIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~---~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (599)
++.+....|++++++.. ..++. +.|+++.||. +...+|..+++.|++.. +..|+++.... ++.
T Consensus 69 ~~~~~~~~g~~~al~~a--~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~-----~~~t~~~~~~~-----~~~ 136 (458)
T PRK14354 69 FALQEEQLGTGHAVMQA--EEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHK-----AAATILTAIAE-----NPT 136 (458)
T ss_pred EEEcCCCCCHHHHHHHH--HHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcC-----CceEEEEEEcC-----CCC
Confidence 44456678889988865 34443 3499999996 66889999999997642 56677666543 334
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhh-HhhhccccchhhHHHh
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEV-LSLFTDNFDYQHLRRH 260 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~v-l~lf~dnfd~q~ir~d 260 (599)
+|+ ++.+|+ +++|..+.+++... +.- -...+..+|+|+++++. ++.+..-..-..-...
T Consensus 137 ~~g----~v~~d~-~~~V~~~~ek~~~~-------~~~--------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 137 GYG----RIIRNE-NGEVEKIVEQKDAT-------EEE--------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred Cce----EEEEcC-CCCEEEEEECCCCC-------hHH--------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 566 556664 67899999876311 000 01235678999999874 4444221000000001
Q ss_pred hhhccccccc-cCCeeEEEeccccce--eeccChhHHHHHHHHhhhcccccc-CCCCccCCCCcceeeecceEECCCcEE
Q 007537 261 FVKGLLLDDI-MGYKIFTHEIHSSYA--ARIDNYRSYDIVSKDIIQRWTYPY-VPDVKFCGNRATKLERRGMYRALEIEQ 336 (599)
Q Consensus 261 fv~~vl~~~~-~g~~I~~~~~~~~y~--~~V~s~~sY~~as~dil~rw~~p~-~p~~~~~~~~~~~~~~~~~~~~~~~~i 336 (599)
++..++...+ .+.++++|.++ ++| .++.++.+|..++.-+..++.... -+...+.. ....+..+++.++.++.|
T Consensus 197 ~~~d~~~~l~~~g~~v~~~~~~-g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~-~~~~~i~~~~~ig~~~~i 274 (458)
T PRK14354 197 YLTDVIEILKNEGEKVGAYQTE-DFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIID-PESTYIDADVEIGSDTVI 274 (458)
T ss_pred eHHHHHHHHHHCCCeEEEEecC-CcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeC-CCeEEECCCcEECCCCEE
Confidence 1222222222 46789999886 554 567788888887654433321100 01111111 112244556677777778
Q ss_pred CCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEECCCC
Q 007537 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGV 415 (599)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~ 415 (599)
++++.|++++.||++|.|++++.|.+++||++|.|+ ++.+.+++|+++++||.+|.|. +++||++++|+.++.|. ++
T Consensus 275 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~-~~ 352 (458)
T PRK14354 275 EPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIK-KS 352 (458)
T ss_pred eCCeEEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEe-ee
Confidence 888888888888999999999888888888888887 4667788888888888888886 67788888887777664 44
Q ss_pred EECCCCC
Q 007537 416 VLSFKPT 422 (599)
Q Consensus 416 vig~~~~ 422 (599)
+|+.++.
T Consensus 353 ~i~~~~~ 359 (458)
T PRK14354 353 TIGEGTK 359 (458)
T ss_pred EECCCCE
Confidence 5555443
No 26
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=3.3e-33 Score=276.37 Aligned_cols=209 Identities=27% Similarity=0.433 Sum_probs=173.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCc-hHHHHHHHHhcccCCCCCceEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~-~~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
|||||||||+|+||+|+|...||+|||++|+|||+|+|++|..+|+++|+|++++. .+++++++....|....+..+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 69999999999999999999999999999999999999999999999999999964 46799998765453332344555
Q ss_pred EecCCcCCHHHHHHHHHHhcccCCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCC----ccCccc
Q 007537 108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI----THQSRL 183 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~----~~~~r~ 183 (599)
+.+....|+|++++.+. ..+.++|+|++||++++.++..+++.|++. ++.|||++.+..+... +.+.+.
T Consensus 81 ~~~~~~~gt~~al~~~~--~~i~~d~lv~~~D~i~~~~l~~~l~~h~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~ 153 (214)
T cd04198 81 IVLDEDMGTADSLRHIR--KKIKKDFLVLSCDLITDLPLIELVDLHRSH-----DASLTVLLYPPPVSSEQKGGKGKSKK 153 (214)
T ss_pred ecCCCCcChHHHHHHHH--hhcCCCEEEEeCccccccCHHHHHHHHhcc-----CCcEEEEEeccCCcccccCCcccccC
Confidence 55677899999999764 446788999999999999999999999875 4889999988663311 013455
Q ss_pred CCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH
Q 007537 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (599)
Q Consensus 184 g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl 245 (599)
..+..++++|++++||++|.+..+ ....+.++..+|..+|++.+++||+|||||||+++|+
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~-~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEED-LDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHH-hhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 556679999999999999997543 2345677999999999999999999999999999875
No 27
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-31 Score=294.09 Aligned_cols=340 Identities=17% Similarity=0.195 Sum_probs=227.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
|+|||||+|.|+||++ .+||+|+|++|+|||+|+|++|...+ ++|+|++++..+.+++|+.. + +.++
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-------~--~~~~ 67 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-------W--VKIF 67 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-------c--cEEE
Confidence 6899999999999985 78999999999999999999999975 89999999888889888864 1 2345
Q ss_pred ecCCcCCHHHHHHHHHHhcccC--CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccC
Q 007537 109 ESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i~--~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g 184 (599)
.++..+|++++++.. ..++. +.|++++||. +.+.++.++++.|+++ ++.+|+++.+.. ++.+||
T Consensus 68 ~~~~~~g~~~ai~~a--~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-----~~d~ti~~~~~~-----~~~~~g 135 (448)
T PRK14357 68 LQEEQLGTAHAVMCA--RDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRK-----GADVTILVADLE-----DPTGYG 135 (448)
T ss_pred ecCCCCChHHHHHHH--HHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhc-----CCeEEEEEEEcC-----CCCCcE
Confidence 566778999999865 44453 3499999997 7788999999999775 377888887764 345677
Q ss_pred CCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhccccchhhHHHhhhh
Q 007537 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVK 263 (599)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~dnfd~q~ir~dfv~ 263 (599)
++.+| ++++ .+.|++..+.. . -...+..+|+|+++++++ +++.+-+....-...++.
T Consensus 136 ----~v~~d--~g~v-~~~e~~~~~~~-----~----------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (448)
T PRK14357 136 ----RIIRD--GGKY-RIVEDKDAPEE-----E----------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLT 193 (448)
T ss_pred ----EEEEc--CCeE-EEEECCCCChH-----H----------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHH
Confidence 66665 4677 66665431100 0 002357899999999985 444421100000001122
Q ss_pred ccccccccCCeeEEEeccccc--eeeccChhHHHHHHHHhhhccccccC-CCCccCCCCcceeeecceEECCCcEECCCC
Q 007537 264 GLLLDDIMGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQSRSA 340 (599)
Q Consensus 264 ~vl~~~~~g~~I~~~~~~~~y--~~~V~s~~sY~~as~dil~rw~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 340 (599)
++++.. .++++|... +| |..++++..|..+...+-.+-...+. +...+.. ....+..+++.++.++.|.+++
T Consensus 194 d~i~~~---~~v~~~~~~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~Ig~~~~i~~~~ 268 (448)
T PRK14357 194 DAVNFA---EKVRVVKTE-DLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILD-PNTTYIHYDVEIGMDTIIYPMT 268 (448)
T ss_pred HHHHhh---hheeEEecC-CHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeC-CCcEEEccceEECCCcEEcCCc
Confidence 233221 357888776 67 55667888877654433221100000 1111110 0112344567777777777777
Q ss_pred EECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEECCCCEECC
Q 007537 341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSF 419 (599)
Q Consensus 341 ~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~vig~ 419 (599)
.|++++.||++|.|++++.|.+|+||++|.|. .+.+.+|+|++++.|+++|+|. +++|+++++||+++.+. +++||.
T Consensus 269 ~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~-~~~ig~ 346 (448)
T PRK14357 269 FIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIK-KSTIGE 346 (448)
T ss_pred EEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeee-ccEEcC
Confidence 78778888888888888888888888888884 4566777777777777777774 47777777777766554 355555
Q ss_pred CCC
Q 007537 420 KPT 422 (599)
Q Consensus 420 ~~~ 422 (599)
++.
T Consensus 347 ~~~ 349 (448)
T PRK14357 347 NTK 349 (448)
T ss_pred CcC
Confidence 543
No 28
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.1e-31 Score=289.07 Aligned_cols=343 Identities=19% Similarity=0.236 Sum_probs=237.9
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
+.+||||||.|+||++ .+||+|+|++|+|||+|+|++|..+|+.+++|++++..+++++|+... ..+.++
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~-------~~i~~v 71 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL-------PGLEFV 71 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc-------CCeEEE
Confidence 6799999999999986 789999999999999999999999999999999998888899988641 135556
Q ss_pred ecCCcCCHHHHHHHHHHhccc---CCCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCccc
Q 007537 109 ESHNIISAGDALRLIYEQNVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i---~~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~ 183 (599)
.+....|++++++... ..+ .++|+++.||. +...++..+++.|++.. +.+|++..+.. ++.+|
T Consensus 72 ~~~~~~G~~~sv~~~~--~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~-----~~~~~~~~~~~-----~~~~~ 139 (450)
T PRK14360 72 EQQPQLGTGHAVQQLL--PVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSN-----ADVTLLTARLP-----NPKGY 139 (450)
T ss_pred EeCCcCCcHHHHHHHH--HHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcC-----CcEEEEEEecC-----CCCCc
Confidence 6666778888887553 233 34599999998 77889999999998753 56676665543 34467
Q ss_pred CCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccc-cchhhHHHhhh
Q 007537 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN-FDYQHLRRHFV 262 (599)
Q Consensus 184 g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dn-fd~q~ir~dfv 262 (599)
| ++.+|+ +++|..+.|+|...... -.+++..+|+|+++++++..+.+. .....-...++
T Consensus 140 g----~~~~d~-~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~ 199 (450)
T PRK14360 140 G----RVFCDG-NNLVEQIVEDRDCTPAQ---------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL 199 (450)
T ss_pred c----EEEECC-CCCEEEEEECCCCChhH---------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH
Confidence 7 666775 68999999987521000 014577899999999776543221 10000011223
Q ss_pred hccccccccCCeeEEEeccccc--eeeccChhHHHHHHHH----hhhccccccCCCCccCCCCcceeeecceEECCCcEE
Q 007537 263 KGLLLDDIMGYKIFTHEIHSSY--AARIDNYRSYDIVSKD----IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQ 336 (599)
Q Consensus 263 ~~vl~~~~~g~~I~~~~~~~~y--~~~V~s~~sY~~as~d----il~rw~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~i 336 (599)
..+++.. ..++.+.+. ++ +..++++..+..+..- +...|..+-+| +... ......++++++.++.|
T Consensus 200 td~i~~~---~~~~~~~v~-~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~---~i~~-~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 200 TDTVSLL---DPVMAVEVE-DYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVT---FIDP-ASCTISETVELGPDVII 271 (450)
T ss_pred HHHHHHH---hhceEEecC-CHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcE---EecC-CeEEEeCCEEECCCCEE
Confidence 3333221 124555565 34 3458888888776433 33346554333 1111 11234456778888888
Q ss_pred CCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEECCCC
Q 007537 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGV 415 (599)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~ 415 (599)
++++.|++++.||++|.|++++.|.+++||++|+|+ ++++.+|+|++++.|+++|.|. +++|+++|+|+.++.|. ++
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~ 349 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK-KS 349 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe-cc
Confidence 888888888999999999999988888888888885 4567777888888888888776 57777777777777664 34
Q ss_pred EECCCCCc
Q 007537 416 VLSFKPTV 423 (599)
Q Consensus 416 vig~~~~~ 423 (599)
+|+.+..+
T Consensus 350 ~i~~~~~i 357 (450)
T PRK14360 350 QLGEGSKV 357 (450)
T ss_pred ccCCCcEe
Confidence 55554433
No 29
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-32 Score=267.13 Aligned_cols=231 Identities=19% Similarity=0.279 Sum_probs=191.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccC-chHHHHHHHHh-cccCCCCCceEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLEN-SEWFSQPNFTVK 106 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~-~~~~i~~~l~~-~~w~~~~~~~i~ 106 (599)
|+|||||+|.|||++|+|...||+|||+.+||||+|.|+.|..+|+++|.|++++ +...+++++.+ +.| +++++
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~----gv~it 76 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDF----GVDIT 76 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCcccc----CcceE
Confidence 7899999999999999999999999999999999999999999999999999987 57889999988 566 68999
Q ss_pred EEecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCC
Q 007537 107 TIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~ 185 (599)
++.|+++.|.++|+. .+++++. ++|+|+.||.++.-+|.++++.+.++. ...++++.++. +++|||
T Consensus 77 Y~~Q~~p~GlA~Av~--~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~-----~ga~i~~~~V~-----dP~rfG- 143 (286)
T COG1209 77 YAVQPEPDGLAHAVL--IAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEG-----SGATILLYEVD-----DPSRYG- 143 (286)
T ss_pred EEecCCCCcHHHHHH--HHHhhcCCCceEEEecCceeccChHHHHHHHhccC-----CCcEEEEEEcC-----Ccccce-
Confidence 999999999999998 5688998 569999999976669999999888764 66788888887 567999
Q ss_pred CceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhh---HHHhhh
Q 007537 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQH---LRRHFV 262 (599)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~---ir~dfv 262 (599)
|+.+|. +++++..+|||..+. ++|.-+|+|+++|.|++.+..--.-.. --.|.+
T Consensus 144 ---V~e~d~-~~~v~~l~EKP~~P~-------------------SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i 200 (286)
T COG1209 144 ---VVEFDE-DGKVIGLEEKPKEPK-------------------SNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAI 200 (286)
T ss_pred ---EEEEcC-CCcEEEeEECCCCCC-------------------CceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHH
Confidence 999996 559999999997442 677889999999999987653211000 011333
Q ss_pred hccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhh
Q 007537 263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (599)
Q Consensus 263 ~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~ 303 (599)
+..+. .|..+...... ++|.+++++++|.+|++-++.
T Consensus 201 ~~~i~---~G~~~~~~~~~-G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 201 DLYIE---KGYLVVAILIR-GWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred HHHHH---cCcEEEEEEcc-ceEEecCChhhHHHHHHHHHH
Confidence 33333 56777776666 799999999999999987765
No 30
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=9e-32 Score=266.45 Aligned_cols=211 Identities=42% Similarity=0.708 Sum_probs=164.8
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccC-CCCCceEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWF-SQPNFTVKT 107 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~-~~~~~~i~~ 107 (599)
|||||||||+|+||.|+|...||+|+|++|+|||+|+|++|..+|+++|+|+++++.+.+.+|+.+..|. ...+..+.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999999876653 112233433
Q ss_pred E--ecCCcCCHHHHHHHHHHhcccCCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCC
Q 007537 108 I--ESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (599)
Q Consensus 108 v--~~~~~~~~g~alr~~~~~~~i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~ 185 (599)
+ .+....|++++++ .++..+.++|+|++||+++++++..++++++ ...+++.|||++....+.......+...
T Consensus 81 ~~~~~~~~~Gta~~l~--~~~~~i~~dflv~~gD~i~~~~l~~~l~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
T cd02507 81 ITSDLCESAGDALRLR--DIRGLIRSDFLLLSCDLVSNIPLSELLEERR---KKDKNAIATLTVLLASPPVSTEQSKKTE 155 (216)
T ss_pred EEccCCCCCccHHHHH--HHhhcCCCCEEEEeCCEeecCCHHHHHHHHH---hhCcccceEEEEEeccCCCCccccccCC
Confidence 3 3334556666555 5577888899999999999999999998722 2234566676666654331111013344
Q ss_pred CceEEEEeCCC--CeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH
Q 007537 186 DELFMAIDPNT--KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (599)
Q Consensus 186 ~~~vv~~d~~~--~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl 245 (599)
+..++++|+++ .++++|.+++.. .....++..+|..++.+.+++||+||||||||++|+
T Consensus 156 ~~~~i~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 156 EEDVIAVDSKTQRLLLLHYEEDLDE-DLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCcEEEEcCCCCceEEEechhhcCc-CcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 55689999877 788899988753 334457999999999999999999999999999975
No 31
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.97 E-value=6e-31 Score=271.70 Aligned_cols=240 Identities=15% Similarity=0.212 Sum_probs=184.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccC--------
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWF-------- 98 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~-------- 98 (599)
..|+|||||||+||||+|+|..+||||+||+|+|||+|+|++|..+|+++|+|++++..+++++|+.. .|.
T Consensus 2 ~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~-~~~~~~~~~~~ 80 (297)
T TIGR01105 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDT-SYELESLLEQR 80 (297)
T ss_pred CceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhc-hHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999999999999999999964 221
Q ss_pred ------------CCCCceEEEEecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeech--------hhHHHHHHHHHHhh
Q 007537 99 ------------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERK 157 (599)
Q Consensus 99 ------------~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~--------~~l~~ll~~h~~~~ 157 (599)
...++++.++.+..+.|+|+|++.. +.++. ++|+|+.||++++ +++.++++.|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a--~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~ 158 (297)
T TIGR01105 81 VKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCA--RPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETG 158 (297)
T ss_pred cchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHH--HHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhC
Confidence 0125678888889999999999955 56675 4599999999886 69999999997643
Q ss_pred ccCCCceEEEEEeecCCCCCccCcccCCCceEEEEeC---CCC---eEEEeeccCCCCCCceEeeHHhHhcCCceEEEcC
Q 007537 158 KKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHND 231 (599)
Q Consensus 158 ~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~vv~~d~---~~~---rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~d 231 (599)
+.++++..... ...+|| ++.+|. ..+ +|..+.|||..+.. ..++
T Consensus 159 -----~~~~~~~~~~~-----~~~~yG----vv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------~~s~ 208 (297)
T TIGR01105 159 -----RSQVLAKRMPG-----DLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------LDSD 208 (297)
T ss_pred -----CcEEEEEEcCC-----CCccce----EEEecccccCCCCeeeEeEEEECCCCccc----------------CCcC
Confidence 44444444322 346888 888742 134 46899999852211 1257
Q ss_pred CccceeEeeChhhHhhhccccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHh
Q 007537 232 KQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (599)
Q Consensus 232 L~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~di 301 (599)
++.+|+|++++++++.+...-.... ....+.++++..+.+.+++++.+. ++|.+|+++++|.+++.++
T Consensus 209 ~~~~GiYi~~~~i~~~l~~~~~~~~-ge~~ltd~i~~l~~~~~v~~~~~~-g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 209 LMAVGRYVLSADIWAELERTEPGAW-GRIQLTDAIAELAKKQSVDAMLMT-GDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EEEEEEEEECHHHHHHHhcCCCCCC-CeeeHHHHHHHHHhcCCEEEEEec-cEEECCCCHHHHHHHHHHH
Confidence 8999999999999998865311100 111122333333445689999986 8999999999999998886
No 32
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.97 E-value=1.6e-30 Score=262.12 Aligned_cols=237 Identities=22% Similarity=0.388 Sum_probs=186.4
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCc-chHHHHHHHHHHCCCcEEEEEc-cCchHHHHHHHHhcc-cCCCCCceEE
Q 007537 30 QAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFC-CAHSKQVIDYLENSE-WFSQPNFTVK 106 (599)
Q Consensus 30 ~aVILA~g~gtR~~PlT~~~PK~LLpi~n~-PlI~y~Le~L~~~gv~eV~vv~-~~~~~~i~~~l~~~~-w~~~~~~~i~ 106 (599)
+|||||||+||||+|+|..+||||||++|+ |||+|+|++|..+|++++++++ +++.+++.+|++... | ++++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~----~~~i~ 76 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKF----GVKIE 76 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGG----TEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccc----cccce
Confidence 699999999999999999999999999999 9999999999999999955554 577899999998753 4 36788
Q ss_pred EEecCCcCCHHHHHHHHHHhcccCC-----CEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCc
Q 007537 107 TIESHNIISAGDALRLIYEQNVIHG-----DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~~-----dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (599)
++.++...|+++|++.+ +..+.. +|++++||++++.++..+++.|++++. ...+++...+.. +..
T Consensus 77 ~i~~~~~~Gta~al~~a--~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~-----~~~ 146 (248)
T PF00483_consen 77 YIVQPEPLGTAGALLQA--LDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNA---DGTVTLLVVPVE-----DPS 146 (248)
T ss_dssp EEEESSSSCHHHHHHHT--HHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSS---CESEEEEEEESS-----GGG
T ss_pred eeecccccchhHHHHHH--HHHhhhccccceEEEEeccccccchhhhHHHhhhcccc---cccccccccccc-----ccc
Confidence 99999999999999965 444443 289999999999999999999999862 124556555544 456
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhh
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHF 261 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~df 261 (599)
+|| ++.+|. +++|+.+.|||.... .+.++.+|+|+++++++..+.+...-..-..++
T Consensus 147 ~~g----~v~~d~-~~~V~~~~EKP~~~~------------------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 147 RYG----VVEVDE-DGRVIRIVEKPDNPN------------------ASNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GSE----EEEEET-TSEEEEEEESCSSHS------------------HSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred cce----eeeecc-ceeEEEEeccCcccc------------------cceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 888 889994 789999999986321 056788999999999999884310000113355
Q ss_pred hhccccccc-cCCeeEEEecccc-ceeeccChhHHHHHHHHhhh
Q 007537 262 VKGLLLDDI-MGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQ 303 (599)
Q Consensus 262 v~~vl~~~~-~g~~I~~~~~~~~-y~~~V~s~~sY~~as~dil~ 303 (599)
+.++++..+ .+..+.++..++. +|.+|++|++|.+|++++++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 556655544 4557778888744 89999999999999999875
No 33
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.97 E-value=2e-30 Score=259.65 Aligned_cols=230 Identities=20% Similarity=0.334 Sum_probs=186.1
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
|+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++.+|+.+ |....++.+.+.
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~--~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE--YEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc--ccccCCeEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999999974 422234566655
Q ss_pred ecCCcCCHHHHHHHHHHhcccC---CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCC
Q 007537 109 ESHNIISAGDALRLIYEQNVIH---GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i~---~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~ 185 (599)
.+....|+++++... +..+. ++|++++||++++.++.++++.|++++ +.+|+++.+.. +..++|
T Consensus 79 ~~~~~~G~~~al~~a--~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~g- 145 (233)
T cd06425 79 IETEPLGTAGPLALA--RDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHG-----AEGTILVTKVE-----DPSKYG- 145 (233)
T ss_pred cCCCCCccHHHHHHH--HHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcC-----CCEEEEEEEcC-----CccccC-
Confidence 566678999998855 44554 469999999999999999999998864 67788887654 345777
Q ss_pred CceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhhhcc
Q 007537 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265 (599)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~v 265 (599)
++.+|+++++|+.+.|||.... ++++++|+|++++++++.+.+.+ .++..++++.+
T Consensus 146 ---~v~~d~~~~~v~~~~ekp~~~~-------------------~~~~~~Giyi~~~~~l~~l~~~~--~~~~~~~~~~l 201 (233)
T cd06425 146 ---VVVHDENTGRIERFVEKPKVFV-------------------GNKINAGIYILNPSVLDRIPLRP--TSIEKEIFPKM 201 (233)
T ss_pred ---eEEEcCCCCEEEEEEECCCCCC-------------------CCEEEEEEEEECHHHHHhcccCc--ccchhhhHHHH
Confidence 7888865689999999875211 45678999999999999887643 22334555544
Q ss_pred ccccccCCeeEEEeccccceeeccChhHHHHHHHHhh
Q 007537 266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDII 302 (599)
Q Consensus 266 l~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil 302 (599)
+ ...+|++|.++ +||.+|+++.+|.++++.+|
T Consensus 202 ~----~~~~v~~~~~~-g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 202 A----SEGQLYAYELP-GFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred H----hcCCEEEEeeC-CEEEcCCCHHHHHHHHHHhC
Confidence 3 34689999997 89999999999999987654
No 34
>PRK10122 GalU regulator GalF; Provisional
Probab=99.97 E-value=2.4e-30 Score=267.72 Aligned_cols=242 Identities=15% Similarity=0.208 Sum_probs=188.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCC-------
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS------- 99 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~------- 99 (599)
..|+|||||||+||||+|+|..+||||+||+|+|||+|+|++|..+|+++|+|++++..+++++|+.. .|..
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~l~~~~~~~ 80 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDT-SYELESLLEQR 80 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhc-chhHHHHHhhc
Confidence 47999999999999999999999999999999999999999999999999999999999999999974 4421
Q ss_pred -------------CCCceEEEEecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeech--------hhHHHHHHHHHHhh
Q 007537 100 -------------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERK 157 (599)
Q Consensus 100 -------------~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~--------~~l~~ll~~h~~~~ 157 (599)
.+++++.++.++++.|+|+|+... +.++. .+|+|+.||++++ +++.++++.|.+.+
T Consensus 81 ~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a--~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~ 158 (297)
T PRK10122 81 VKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCA--RPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETG 158 (297)
T ss_pred chhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHH--HHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhC
Confidence 135678888888999999999854 66675 4599999999875 68999999997653
Q ss_pred ccCCCceEEEEEeecCCCCCccCcccCCCceEEEEeC---CCC---eEEEeeccCCCCCCceEeeHHhHhcCCceEEEcC
Q 007537 158 KKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHND 231 (599)
Q Consensus 158 ~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~vv~~d~---~~~---rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~d 231 (599)
+.++++..... ...+|| ++.+|. .++ +|..+.|||..+.. ..++
T Consensus 159 -----~~~~~~~~~~~-----~~~~yG----vv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------~~s~ 208 (297)
T PRK10122 159 -----RSQVLAKRMPG-----DLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------LDSD 208 (297)
T ss_pred -----CcEEEEEECCC-----CCCCce----EEEecCcccCCCCeeeEEEEEECCCCccc----------------CCcc
Confidence 34444444322 345788 788862 234 78899999752110 1256
Q ss_pred CccceeEeeChhhHhhhccccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHh-hh
Q 007537 232 KQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI-IQ 303 (599)
Q Consensus 232 L~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~di-l~ 303 (599)
++.+|+|+++++++..+.+.... .....++.++++..+.+.++++|.++ ++|.+|+++++|.+++.++ ++
T Consensus 209 ~~~~GiYi~~~~i~~~l~~~~~~-~~~e~~ltd~i~~l~~~~~v~~~~~~-G~w~DiG~p~~~~~a~~~~~~~ 279 (297)
T PRK10122 209 LMAVGRYVLSADIWPELERTEPG-AWGRIQLTDAIAELAKKQSVDAMLMT-GDSYDCGKKMGYMQAFVKYGLR 279 (297)
T ss_pred EEEEEEEEECHHHHHHHHhCCCC-CCCeeeHHHHHHHHHhCCCEEEEEeC-CEEEcCCCHHHHHHHHHHHHhc
Confidence 78999999999999988653211 11123344445554556789999997 8999999999999999987 44
No 35
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.97 E-value=2.3e-30 Score=263.15 Aligned_cols=235 Identities=20% Similarity=0.327 Sum_probs=184.3
Q ss_pred EEEEeCC--CCCCCCCCCCCCCcccceeCCcchHHHHHHHHHH-CCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEE
Q 007537 31 AILLADS--FTTKFRPITLERPKVLLPLVNVPMINYTLAWLEA-AGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 31 aVILA~g--~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~-~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
|||||+| +|+||+|+|..+||||+||+|+|||+|+|++|.. +|+++|+|++++..+++++|+.+... ..++.+.+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~--~~~~~i~~ 78 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ--EFNVPIRY 78 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc--ccCceEEE
Confidence 6899999 8999999999999999999999999999999999 69999999999999999999986321 12466777
Q ss_pred EecCCcCCHHHHHHHHHHhcccC----CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCccc
Q 007537 108 IESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~----~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~ 183 (599)
+.+....|+++|+..+ +.++. ++|+|++||++++.++.++++.|+++. +.+|+++.+.... ...+|
T Consensus 79 ~~~~~~~Gt~~al~~a--~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~-----~~~tl~~~~~~~~---~~~~y 148 (257)
T cd06428 79 LQEYKPLGTAGGLYHF--RDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHG-----ASGTILGTEASRE---QASNY 148 (257)
T ss_pred ecCCccCCcHHHHHHH--HHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcC-----CCEEEEEEEcccc---ccccc
Confidence 7777788999998864 44552 459999999999999999999998764 6788888775322 34567
Q ss_pred CCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccch-----h---
Q 007537 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY-----Q--- 255 (599)
Q Consensus 184 g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~-----q--- 255 (599)
| ++.+|+.+++|+.+.|||... .++++.+|+|+++++++..+.+...- +
T Consensus 149 g----~v~~d~~~g~v~~~~Ekp~~~-------------------~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~ 205 (257)
T cd06428 149 G----CIVEDPSTGEVLHYVEKPETF-------------------VSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGD 205 (257)
T ss_pred c----EEEEeCCCCeEEEEEeCCCCc-------------------ccceEEEEEEEECHHHHHHHhhhcccccccccccc
Confidence 7 777885478999999997521 13578899999999999877632110 0
Q ss_pred -------hHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHh
Q 007537 256 -------HLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (599)
Q Consensus 256 -------~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~di 301 (599)
....++..++++..+...+|++|.++ +||.+|+|+++|.++++.+
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~-g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 206 DNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTD-DFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccceeeehhhhhhHHhccCCEEEecCC-CeeecCCCHHHHHhHhhcC
Confidence 00112334555554455689999997 8999999999999998753
No 36
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.97 E-value=6.4e-29 Score=256.03 Aligned_cols=231 Identities=17% Similarity=0.234 Sum_probs=179.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccC-chHHHHHHHHh-cccCCCCCce
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLEN-SEWFSQPNFT 104 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~-~~~~i~~~l~~-~~w~~~~~~~ 104 (599)
..|+|||||||+||||+|+|..+||+|+||+|+|||+|+|++|..+|+++|+|++++ ..+++++|+++ ..| +++
T Consensus 2 ~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~----g~~ 77 (292)
T PRK15480 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQW----GLN 77 (292)
T ss_pred CceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCcccc----Cce
Confidence 469999999999999999999999999999999999999999999999999987765 46889999986 345 577
Q ss_pred EEEEecCCcCCHHHHHHHHHHhcccCC-CEEEEcCCe-echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcc
Q 007537 105 VKTIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (599)
Q Consensus 105 i~~v~~~~~~~~g~alr~~~~~~~i~~-dfllv~gD~-v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (599)
+.++.++.+.|+++|+... +.++.+ +|+|+.||. +++.+|..+++.|.+.+ +.+|++..+.. ++.+
T Consensus 78 i~y~~q~~~~Gta~Al~~a--~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~-----~~~tv~~~~v~-----~p~~ 145 (292)
T PRK15480 78 LQYKVQPSPDGLAQAFIIG--EEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKE-----SGATVFAYHVN-----DPER 145 (292)
T ss_pred eEEEECCCCCCHHHHHHHH--HHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCC-----CCeEEEEEEcC-----Cccc
Confidence 8888888899999999854 666754 599999997 45899999999997653 56777766654 4568
Q ss_pred cCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchh----hHH
Q 007537 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQ----HLR 258 (599)
Q Consensus 183 ~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q----~ir 258 (599)
|| ++.+|+ +++|+.++|||..+ .+++..+|+|++++++++.+..-.... .+
T Consensus 146 yG----vv~~d~-~g~v~~i~EKP~~p-------------------~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i- 200 (292)
T PRK15480 146 YG----VVEFDQ-NGTAISLEEKPLQP-------------------KSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI- 200 (292)
T ss_pred Cc----EEEECC-CCcEEEEEECCCCC-------------------CCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-
Confidence 88 888885 68999999998522 256788999999999999875321100 11
Q ss_pred HhhhhccccccccCCeeEEEecccc-ceeeccChhHHHHHHHHhh
Q 007537 259 RHFVKGLLLDDIMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDII 302 (599)
Q Consensus 259 ~dfv~~vl~~~~~g~~I~~~~~~~~-y~~~V~s~~sY~~as~dil 302 (599)
.|+++.++. .|.....+... + +|.+++|+++|.++++.+-
T Consensus 201 td~~~~~l~---~g~~~~~~~~~-g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 201 TDINRIYME---QGRLSVAMMGR-GYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred HHHHHHHHh---cCCeEEEEecC-CcEEECCCCHHHHHHHHHHHH
Confidence 234433332 23333334444 6 5999999999999987664
No 37
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.96 E-value=1.5e-28 Score=247.22 Aligned_cols=232 Identities=18% Similarity=0.185 Sum_probs=175.2
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCc-hHHHHHHHHhc-ccCCCCCceEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENS-EWFSQPNFTVK 106 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~-~~~i~~~l~~~-~w~~~~~~~i~ 106 (599)
|+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|+++++ .+++.+|+... .| ++.+.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~----~~~i~ 76 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDL----GIRIT 76 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhccccc----CceEE
Confidence 68999999999999999999999999999999999999999999999999988754 68899999763 45 46677
Q ss_pred EEecCCcCCHHHHHHHHHHhcccCC-CEEEEcCCe-echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccC
Q 007537 107 TIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~~-dfllv~gD~-v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g 184 (599)
++.+....|+++|++.. +.++.+ +|+|++||. +.+.++.++++.|++.+ +.+|+++.+.. ++.+||
T Consensus 77 ~~~~~~~~G~~~al~~a--~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~g 144 (240)
T cd02538 77 YAVQPKPGGLAQAFIIG--EEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQK-----EGATVFGYEVN-----DPERYG 144 (240)
T ss_pred EeeCCCCCCHHHHHHHH--HHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcC-----CCcEEEEEECC-----chhcCc
Confidence 77666778999999844 556654 499999997 56788999999997643 56777777654 345677
Q ss_pred CCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhhhc
Q 007537 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG 264 (599)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~ 264 (599)
++.+|. +++|..+.|||.... .+++.+|+|++++++++++.+...... ....+..
T Consensus 145 ----~v~~d~-~g~v~~~~ekp~~~~-------------------~~~~~~Giyi~~~~~l~~l~~~~~~~~-~~~~l~d 199 (240)
T cd02538 145 ----VVEFDE-NGRVLSIEEKPKKPK-------------------SNYAVTGLYFYDNDVFEIAKQLKPSAR-GELEITD 199 (240)
T ss_pred ----eEEecC-CCcEEEEEECCCCCC-------------------CCeEEEEEEEECHHHHHHHHhcCCCCC-CeEEhHH
Confidence 788885 679999999875211 346789999999999988753211000 0111223
Q ss_pred cccccccCCeeEEEecc-ccceeeccChhHHHHHHHHh
Q 007537 265 LLLDDIMGYKIFTHEIH-SSYAARIDNYRSYDIVSKDI 301 (599)
Q Consensus 265 vl~~~~~g~~I~~~~~~-~~y~~~V~s~~sY~~as~di 301 (599)
+++..+...++.++.++ .+||.+|+++++|.++++.+
T Consensus 200 ~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 200 VNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred HHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 33333333455555553 38999999999999998753
No 38
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.96 E-value=2.1e-28 Score=248.31 Aligned_cols=228 Identities=15% Similarity=0.237 Sum_probs=177.1
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcc-----cCC-----
Q 007537 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-----WFS----- 99 (599)
Q Consensus 30 ~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~-----w~~----- 99 (599)
+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|++|..+|+++|+|++++..+++++|+.+.. |..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 5899999999999999999999999999999999999999999999999999999999999997521 110
Q ss_pred --------CCCceEEEEecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEe
Q 007537 100 --------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK 170 (599)
Q Consensus 100 --------~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~ 170 (599)
.++..+.+..+....|+|+|++.. +.++. ++|++++||+++++++.++++.|++.. +.+|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~--~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~~-----~d~tl~~~ 153 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRV--REYLDDEAFCFTYGDGVADIDIKALIAFHRKHG-----KKATVTAV 153 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHH--HHhcCCCeEEEEeCCeEecCCHHHHHHHHHHcC-----CCEEEEEe
Confidence 001123344445668999999854 56676 469999999999999999999998753 66777654
Q ss_pred ecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhcc
Q 007537 171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD 250 (599)
Q Consensus 171 ~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~d 250 (599)
+ ...+|| ++.+|. ++|..+.|+|... ++++++|+|+++|++++++.+
T Consensus 154 ~-------~~~~yG----~v~~d~--~~V~~~~Ekp~~~--------------------~~~i~~Giyi~~~~il~~l~~ 200 (254)
T TIGR02623 154 Q-------PPGRFG----ALDLEG--EQVTSFQEKPLGD--------------------GGWINGGFFVLNPSVLDLIDG 200 (254)
T ss_pred c-------CCCccc----EEEECC--CeEEEEEeCCCCC--------------------CCeEEEEEEEEcHHHHhhccc
Confidence 3 234677 677773 5899999987421 246789999999999988865
Q ss_pred ccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhc
Q 007537 251 NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQR 304 (599)
Q Consensus 251 nfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~r 304 (599)
... ++..|+++.++ ...++++|.++ +||.+|+++++|.++++...+.
T Consensus 201 ~~~--~~~~d~i~~l~----~~~~v~~~~~~-g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 201 DAT--VWEQEPLETLA----QRGELSAYEHS-GFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred cCc--hhhhhHHHHHH----hCCCEEEEeCC-CEEecCCchHHHHHHHHHHHcC
Confidence 321 22345555444 34579999997 8999999999999988776553
No 39
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.96 E-value=2.2e-28 Score=251.62 Aligned_cols=232 Identities=18% Similarity=0.223 Sum_probs=177.4
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEcc-CchHHHHHHHHhc-ccCCCCCceEEE
Q 007537 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQVIDYLENS-EWFSQPNFTVKT 107 (599)
Q Consensus 30 ~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~-~~~~~i~~~l~~~-~w~~~~~~~i~~ 107 (599)
+|||||+|.||||+|+|..+||+|+||+|+|||+|+|++|..+|+++|+|+++ ++.+.+++|+.+. .| ++++.+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~----g~~i~~ 76 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQW----GVNLSY 76 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcccccc----CceEEE
Confidence 58999999999999999999999999999999999999999999999998886 4568899999763 45 578888
Q ss_pred EecCCcCCHHHHHHHHHHhcccCC-CEEEEcCCe-echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCC
Q 007537 108 IESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~~-dfllv~gD~-v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~ 185 (599)
+.++.+.|+++|+... +.++.+ +|+|+.||. +++.+|..+++.|.+.. +.+|++..+.. ++.+||
T Consensus 77 ~~q~~~~Gta~al~~a--~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~-----~~~ti~~~~v~-----~p~~yG- 143 (286)
T TIGR01207 77 AVQPSPDGLAQAFIIG--EDFIGGDPSALVLGDNIFYGHDLSDLLKRAAARE-----SGATVFAYQVS-----DPERYG- 143 (286)
T ss_pred EEccCCCCHHHHHHHH--HHHhCCCCEEEEECCEeccccCHHHHHHHHHhcC-----CCcEEEEEEcc-----CHHHCc-
Confidence 8888899999999854 566764 599999997 56889999999997643 56677776654 456888
Q ss_pred CceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhhhcc
Q 007537 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265 (599)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~v 265 (599)
++.+|+ +++|+.+.|||..+ .+++..+|+|++++++++++.....-.. ..-.+.++
T Consensus 144 ---vv~~d~-~g~V~~i~EKp~~~-------------------~s~~~~~GiYi~~~~i~~~l~~~~~~~~-ge~eitdv 199 (286)
T TIGR01207 144 ---VVEFDS-NGRAISIEEKPAQP-------------------KSNYAVTGLYFYDNRVVEIARQLKPSAR-GELEITDL 199 (286)
T ss_pred ---eEEECC-CCeEEEEEECCCCC-------------------CCCEEEEEEEEEchHHHHHHhhcCCCCC-CcEeHHHH
Confidence 888885 68999999997521 1456789999999999987743211000 01122333
Q ss_pred ccccccCCeeEEEeccccc-eeeccChhHHHHHHHHhh
Q 007537 266 LLDDIMGYKIFTHEIHSSY-AARIDNYRSYDIVSKDII 302 (599)
Q Consensus 266 l~~~~~g~~I~~~~~~~~y-~~~V~s~~sY~~as~dil 302 (599)
++..+..+++..+.+..++ |.+++++++|.+++..+-
T Consensus 200 ~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 200 NRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred HHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 3333333345555554476 999999999999986553
No 40
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.96 E-value=5e-28 Score=240.15 Aligned_cols=219 Identities=19% Similarity=0.274 Sum_probs=173.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEe
Q 007537 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (599)
Q Consensus 30 ~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~ 109 (599)
+|||||+|.|+||+|+|..+||||+|++|+|||+|+|++|.++|+++|+|+++++.+++.+|+.+..| ++.+.++.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~----~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSRF----GLRITISD 76 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcccC----CceEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999986345 46677666
Q ss_pred cC-CcCCHHHHHHHHHHhcccC-CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCCc
Q 007537 110 SH-NIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDE 187 (599)
Q Consensus 110 ~~-~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~ 187 (599)
+. ...|++++++.. +..+. ++|++++||++++.++..+++.|+++. .++.+|+...+.. +..++|
T Consensus 77 ~~~~~~g~~~~l~~~--~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~g--- 143 (221)
T cd06422 77 EPDELLETGGGIKKA--LPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRM---DALLLLLPLVRNP-----GHNGVG--- 143 (221)
T ss_pred CCCcccccHHHHHHH--HHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhcc---CCCceEEEEEEcC-----CCCCcc---
Confidence 65 567889988854 45565 469999999999999999999998521 3467777765543 334666
Q ss_pred eEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhhhcccc
Q 007537 188 LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLL 267 (599)
Q Consensus 188 ~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~vl~ 267 (599)
++.+|. +++|..+.++|. ..++.+|+|+++++++..+.+.. + . -.|+++.+
T Consensus 144 -~v~~d~-~~~v~~~~~~~~----------------------~~~~~~Giyi~~~~~l~~l~~~~-~-~-~~d~~~~l-- 194 (221)
T cd06422 144 -DFSLDA-DGRLRRGGGGAV----------------------APFTFTGIQILSPELFAGIPPGK-F-S-LNPLWDRA-- 194 (221)
T ss_pred -eEEECC-CCcEeecccCCC----------------------CceEEEEEEEEcHHHHhhCCcCc-c-c-HHHHHHHH--
Confidence 677885 578888887753 14578999999999998776541 1 1 12444433
Q ss_pred ccccCCeeEEEeccccceeeccChhHHHHH
Q 007537 268 DDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (599)
Q Consensus 268 ~~~~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (599)
+..+++++|..+ +||.+|+++++|.++
T Consensus 195 --~~~~~~~~~~~~-g~w~di~t~~~~~~a 221 (221)
T cd06422 195 --IAAGRLFGLVYD-GLWFDVGTPERLLAA 221 (221)
T ss_pred --HHcCCeEEEecC-CEEEcCCCHHHHhhC
Confidence 344578888875 899999999999864
No 41
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.96 E-value=6.6e-28 Score=246.34 Aligned_cols=239 Identities=14% Similarity=0.221 Sum_probs=179.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCC---------
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS--------- 99 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~--------- 99 (599)
|+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|.++|+++|+|+++++.+++.+|+.. .|..
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDR-SYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCC-cHHHHHHHHhccc
Confidence 689999999999999999999999999999999999999999999999999999999999999965 2210
Q ss_pred ----------CCCceEEEEecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeechh---hHHHHHHHHHHhhccCCCceE
Q 007537 100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM---LLTQALQEHKERKKKDNNAVM 165 (599)
Q Consensus 100 ----------~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~---~l~~ll~~h~~~~~~d~~a~m 165 (599)
..++.+.++.++..+|++++++.. +.++. ++|+|++||++... ++.++++.|++.. +.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~--~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~-----~~- 151 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCA--KPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTG-----AS- 151 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcCCCCChHHHHHHH--HHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhC-----CC-
Confidence 014567777777889999999855 45565 45999999997654 5999999998743 32
Q ss_pred EEEEeecCCCCCccCcccCCCceEEEEeCC---CCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeCh
Q 007537 166 TMIIKKSKPSPITHQSRLGTDELFMAIDPN---TKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSP 242 (599)
Q Consensus 166 T~~~~~~~~~~~~~~~r~g~~~~vv~~d~~---~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp 242 (599)
++++....+. ...+|| ++.+|++ +++|..+.|||..... .+.++.+|+|++++
T Consensus 152 ~~~~~~~~~~---~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~~~-----------------~~~~~~~Giyi~~~ 207 (267)
T cd02541 152 VIAVEEVPPE---DVSKYG----IVKGEKIDGDVFKVKGLVEKPKPEEA-----------------PSNLAIVGRYVLTP 207 (267)
T ss_pred EEEEEEcChh---cCccce----EEEeecCCCCceEEeEEEECCCCCCC-----------------CCceEEEEEEEcCH
Confidence 3444443322 345677 7888852 4589999999752110 13567799999999
Q ss_pred hhHhhhccccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhh
Q 007537 243 EVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDII 302 (599)
Q Consensus 243 ~vl~lf~dnfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil 302 (599)
+++..+.+... ..-...++..+++..+..++|++|.++ +||.+|+|+++|.++++++.
T Consensus 208 ~~~~~l~~~~~-~~~~e~~~~d~i~~l~~~~~v~~~~~~-g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 208 DIFDILENTKP-GKGGEIQLTDAIAKLLEEEPVYAYVFE-GKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHhCCC-CCCCcEEHHHHHHHHHhcCCEEEEEee-eEEEeCCCHHHHHHHHHHHh
Confidence 99987754110 000112233444444444589999998 89999999999999999863
No 42
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.96 E-value=1.1e-27 Score=248.45 Aligned_cols=239 Identities=15% Similarity=0.169 Sum_probs=183.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhc-ccC-------
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWF------- 98 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~-~w~------- 98 (599)
..++|||+|+|.|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|++++..+++.+|+... .|.
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~ 86 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRV 86 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhh
Confidence 368999999999999999999999999999999999999999999999999999999999999999752 231
Q ss_pred -----------CCCCceEEEEecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeech--------hhHHHHHHHHHHhhc
Q 007537 99 -----------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERKK 158 (599)
Q Consensus 99 -----------~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~--------~~l~~ll~~h~~~~~ 158 (599)
..++..+.++.+....|+|+|++.. +.++. ++|+|++||++++ .++.++++.|++..
T Consensus 87 ~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a--~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~- 163 (302)
T PRK13389 87 KRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCA--HPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETG- 163 (302)
T ss_pred hhHHHHhhhhccccCceEEEeecCCCCChHHHHHHH--HHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcC-
Confidence 0123466677777789999999864 44564 4599999999764 79999999997653
Q ss_pred cCCCceEEEEEeecCCCCCccCcccCCCceEEEEeC------CCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCC
Q 007537 159 KDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP------NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK 232 (599)
Q Consensus 159 ~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~vv~~d~------~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL 232 (599)
+. |+++.+.. ...+|| ++.+|. ++++|..+.|||..... .+++
T Consensus 164 ----~~-tl~~~~~~-----~~~~yG----vv~~~~~~~~~~~~~~V~~~~EKp~~~~~-----------------~s~~ 212 (302)
T PRK13389 164 ----HS-QIMVEPVA-----DVTAYG----VVDCKGVELAPGESVPMVGVVEKPKADVA-----------------PSNL 212 (302)
T ss_pred ----CC-EEEEEEcc-----cCCcce----EEEecCcccccCCcceEEEEEECCCCCCC-----------------CccE
Confidence 33 55555543 345788 777763 24589999999852110 1356
Q ss_pred ccceeEeeChhhHhhhccccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHh
Q 007537 233 QDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (599)
Q Consensus 233 ~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~di 301 (599)
+.+|+|++++++++++.....-. -...++.++++..+.+.+|++|.++ +||.+|+++++|.+++.++
T Consensus 213 ~~~GiYi~~~~il~~l~~~~~~~-~~e~~l~d~i~~l~~~~~v~~~~~~-G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 213 AIVGRYVLSADIWPLLAKTPPGA-GDEIQLTDAIDMLIEKETVEAYHMK-GKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEEEEEEECHHHHHHHHhCCCCC-CCeeeHHHHHHHHHHcCCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence 88999999999999885432111 0123344455444445689999987 8999999999999998875
No 43
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.96 E-value=1.1e-27 Score=243.76 Aligned_cols=234 Identities=15% Similarity=0.212 Sum_probs=174.0
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCC---------
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS--------- 99 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~--------- 99 (599)
|+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|++++..+++.+|+.. .|..
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDT-SYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcc-cHHHHHHHHhhhh
Confidence 689999999999999999999999999999999999999999999999999999999999999974 2210
Q ss_pred ----------CCCceEEEEecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeechh---hHHHHHHHHHHhhccCCCceE
Q 007537 100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM---LLTQALQEHKERKKKDNNAVM 165 (599)
Q Consensus 100 ----------~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~---~l~~ll~~h~~~~~~d~~a~m 165 (599)
.+++.+.++.+....|++++++.. +.++. ++|+|++||++... ++.++++.|++.+ +.+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~--~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~-----~~i 152 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQKEQKGLGHAVLCA--EPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYG-----CSI 152 (260)
T ss_pred HHHHHHhhhccccceEEEEecCCCCCHHHHHHHH--HHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhC-----CCE
Confidence 012456666667788999999855 55564 45999999996543 7999999998753 443
Q ss_pred EEEEeecCCCCCccCcccCCCceEEEEe---CCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeCh
Q 007537 166 TMIIKKSKPSPITHQSRLGTDELFMAID---PNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSP 242 (599)
Q Consensus 166 T~~~~~~~~~~~~~~~r~g~~~~vv~~d---~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp 242 (599)
+++...... ...+|| ++.+| .++++|..+.|||..... .++++.+|+|++++
T Consensus 153 -i~~~~~~~~---~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~~~-----------------~~~~~~~Giyi~~~ 207 (260)
T TIGR01099 153 -IAVEEVPKE---EVSKYG----VIDGEGVEEGLYEIKDMVEKPKPEEA-----------------PSNLAIVGRYVLTP 207 (260)
T ss_pred -EEEEECChh---hcccCc----eEEeccccCCceeEEEEEECCCCCCC-----------------CCceEEEEEEECCH
Confidence 334333322 345777 77776 234799999999742110 13567899999999
Q ss_pred hhHhhhccccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHH
Q 007537 243 EVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (599)
Q Consensus 243 ~vl~lf~dnfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (599)
+++..+.+...-. -...++.++++..+...+|++|.++ +||.+|+++++|+++
T Consensus 208 ~~~~~l~~~~~~~-~~~~~l~d~i~~l~~~~~v~~~~~~-g~w~digs~~~y~~a 260 (260)
T TIGR01099 208 DIFDLLEETPPGA-GGEIQLTDALRKLLEKETVYAYKFK-GKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHhCCCCC-CCceeHHHHHHHHHhcCCEEEEEcc-eEEEeCCCHHHHhhC
Confidence 9998875421100 0112233444444445689999997 899999999999864
No 44
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.95 E-value=3.3e-27 Score=236.48 Aligned_cols=229 Identities=14% Similarity=0.281 Sum_probs=181.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhc-ccCCCCCceEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKT 107 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~-~w~~~~~~~i~~ 107 (599)
|+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|++|..+|+++|+|++++..+++++|+.+. +| ++.+.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~----~~~i~~ 76 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRF----GVRITY 76 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhc----CCeEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999763 34 466777
Q ss_pred EecCCcCCHHHHHHHHHHhcccC-CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCC
Q 007537 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~ 186 (599)
+.+....|++++++.. +..+. ++|++++||++++.++.++++.|.+.+ +.+|+++.+.. +..+++
T Consensus 77 ~~~~~~~g~~~sl~~a--~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~g-- 142 (236)
T cd04189 77 ILQEEPLGLAHAVLAA--RDFLGDEPFVVYLGDNLIQEGISPLVRDFLEED-----ADASILLAEVE-----DPRRFG-- 142 (236)
T ss_pred EECCCCCChHHHHHHH--HHhcCCCCEEEEECCeecCcCHHHHHHHHHhcC-----CceEEEEEECC-----Ccccce--
Confidence 7777788999999855 45565 569999999999999999999998753 56777776653 334566
Q ss_pred ceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchh----hHHHhhh
Q 007537 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQ----HLRRHFV 262 (599)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q----~ir~dfv 262 (599)
++.+| +++|..+.++|... .+.+..+|+|++++++++.+....... .+ .|++
T Consensus 143 --~~~~d--~~~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~ 198 (236)
T cd04189 143 --VAVVD--DGRIVRLVEKPKEP-------------------PSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAI 198 (236)
T ss_pred --EEEEc--CCeEEEEEECCCCC-------------------CCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHH
Confidence 66677 35999998886421 134567999999999998764311100 01 2444
Q ss_pred hccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhh
Q 007537 263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (599)
Q Consensus 263 ~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~ 303 (599)
..++. .|.+|+++.++ +||.+|+++++|..+++.+|+
T Consensus 199 ~~~i~---~g~~v~~~~~~-~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 199 QWLID---RGRRVGYSIVT-GWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHH---cCCcEEEEEcC-ceEEeCCCHHHHHHHHHHHHh
Confidence 43332 56789999997 899999999999999998875
No 45
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.95 E-value=5.4e-27 Score=237.87 Aligned_cols=225 Identities=15% Similarity=0.218 Sum_probs=172.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcc-----cCCC-----
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-----WFSQ----- 100 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~-----w~~~----- 100 (599)
|||||||+|+||+|+|..+||||+||+|+|||+|+++.+..+|+++|+|++++..+++++|+.+.. |...
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 699999999999999999999999999999999999999999999999999999999999997632 2100
Q ss_pred --------CCceEEEEecCCcCCHHHHHHHHHHhcccC--CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEe
Q 007537 101 --------PNFTVKTIESHNIISAGDALRLIYEQNVIH--GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK 170 (599)
Q Consensus 101 --------~~~~i~~v~~~~~~~~g~alr~~~~~~~i~--~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~ 170 (599)
.++.++++.+....+++++++.. +..+. ++|+|++||++++.++..+++.|+.. ++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a--~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~-----~~~~tl~~~ 153 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRV--RRYLGDDETFMLTYGDGVSDVNINALIEFHRSH-----GKLATVTAV 153 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHHH--HHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHc-----CCCEEEEEe
Confidence 01112222222346688888854 55665 45999999999999999999999775 367787765
Q ss_pred ecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhcc
Q 007537 171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD 250 (599)
Q Consensus 171 ~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~d 250 (599)
+. ..+|| ++.+|. +++|..+.++|... +.++.+|+|+++|++++.+..
T Consensus 154 ~~-------~~~~g----~v~~d~-~g~V~~~~ekp~~~--------------------~~~i~~Giyi~~~~l~~~l~~ 201 (253)
T cd02524 154 HP-------PGRFG----ELDLDD-DGQVTSFTEKPQGD--------------------GGWINGGFFVLEPEVFDYIDG 201 (253)
T ss_pred cC-------CCccc----EEEECC-CCCEEEEEECCCCC--------------------CceEEEEEEEECHHHHHhhcc
Confidence 41 23566 678886 58999999987521 235678999999999987765
Q ss_pred ccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHh
Q 007537 251 NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (599)
Q Consensus 251 nfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~di 301 (599)
. ..++..++++..+...++++|.++ +||.+|+|+.+|..+.+.+
T Consensus 202 ~------~~~~~~d~l~~li~~~~v~~~~~~-g~w~~I~t~~~~~~~~~~~ 245 (253)
T cd02524 202 D------DTVFEREPLERLAKDGELMAYKHT-GFWQCMDTLRDKQTLEELW 245 (253)
T ss_pred c------cchhhHHHHHHHHhcCCEEEEecC-CEEEeCcCHHHHHHHHHHH
Confidence 3 122333344444444588999987 7999999999999987554
No 46
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.95 E-value=2.3e-26 Score=227.74 Aligned_cols=219 Identities=21% Similarity=0.368 Sum_probs=174.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhc-ccCCCCCceEEEEe
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKTIE 109 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~-~w~~~~~~~i~~v~ 109 (599)
|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++++|+.+. +| ++.+.++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~----~~~i~~~~ 76 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKF----GVNISYVR 76 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCcccc----CccEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999763 34 35677776
Q ss_pred cCCcCCHHHHHHHHHHhcccCCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCCceE
Q 007537 110 SHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELF 189 (599)
Q Consensus 110 ~~~~~~~g~alr~~~~~~~i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~v 189 (599)
+..+.|++++++.+. ..+.++|+|++||.+++.++..+++.|++. ++.+|+++.+..+ ...++ +
T Consensus 77 ~~~~~g~~~~l~~~~--~~~~~~~lv~~~D~i~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~-----~~~~g----~ 140 (220)
T cd06426 77 EDKPLGTAGALSLLP--EKPTDPFLVMNGDILTNLNYEHLLDFHKEN-----NADATVCVREYEV-----QVPYG----V 140 (220)
T ss_pred CCCCCcchHHHHHHH--hhCCCCEEEEcCCEeeccCHHHHHHHHHhc-----CCCEEEEEEEcCC-----CCcce----E
Confidence 667789999988653 344667999999999999999999999875 3667777766432 23455 6
Q ss_pred EEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhhhcccccc
Q 007537 190 MAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDD 269 (599)
Q Consensus 190 v~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~vl~~~ 269 (599)
+.+| .++|+.+.++|.. +.++.+|+|+++++++..+.++-.| .+ .++++.++.
T Consensus 141 ~~~d--~~~v~~~~ek~~~---------------------~~~~~~Giy~~~~~~~~~i~~~~~~-~l-~~~~~~~i~-- 193 (220)
T cd06426 141 VETE--GGRITSIEEKPTH---------------------SFLVNAGIYVLEPEVLDLIPKNEFF-DM-PDLIEKLIK-- 193 (220)
T ss_pred EEEC--CCEEEEEEECCCC---------------------CCeEEEEEEEEcHHHHhhcCCCCCc-CH-HHHHHHHHH--
Confidence 6676 3899999988642 2356799999999999988765322 12 245554443
Q ss_pred ccCCeeEEEeccccceeeccChhHHHHHH
Q 007537 270 IMGYKIFTHEIHSSYAARIDNYRSYDIVS 298 (599)
Q Consensus 270 ~~g~~I~~~~~~~~y~~~V~s~~sY~~as 298 (599)
.+.+|++|.++ ++|.+|+|+.+|.+++
T Consensus 194 -~~~~i~~~~~~-~~w~~igt~~dl~~a~ 220 (220)
T cd06426 194 -EGKKVGVFPIH-EYWLDIGRPEDYEKAN 220 (220)
T ss_pred -CCCcEEEEEeC-CeEEeCCCHHHHHhhC
Confidence 45679999998 8999999999998864
No 47
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.95 E-value=1.1e-26 Score=228.99 Aligned_cols=215 Identities=22% Similarity=0.424 Sum_probs=174.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcc-cCCCCCceEEEEe
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQPNFTVKTIE 109 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~-w~~~~~~~i~~v~ 109 (599)
|||||+|.|+||+|+|..+||+|+|++|+|||+|++++|..+|+++|+|+++++.+++++|+.... | ++.+.++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~----~~~i~~~~ 76 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKF----GVNIEYVV 76 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhc----CceEEEEe
Confidence 699999999999999999999999999999999999999999999999999998899999997632 3 35677777
Q ss_pred cCCcCCHHHHHHHHHHhccc-CCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCCce
Q 007537 110 SHNIISAGDALRLIYEQNVI-HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (599)
Q Consensus 110 ~~~~~~~g~alr~~~~~~~i-~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~ 188 (599)
+....|++++++.. ...+ .++|+|++||++++.++.++++.|++. ++.+|+++.+.. +..+++
T Consensus 77 ~~~~~g~~~al~~~--~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~---- 140 (217)
T cd04181 77 QEEPLGTAGAVRNA--EDFLGDDDFLVVNGDVLTDLDLSELLRFHREK-----GADATIAVKEVE-----DPSRYG---- 140 (217)
T ss_pred CCCCCccHHHHHHh--hhhcCCCCEEEEECCeecCcCHHHHHHHHHhc-----CCCEEEEEEEcC-----CCCcce----
Confidence 76778999999865 4455 456999999999999999999988875 367888887754 334666
Q ss_pred EEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhhhccccc
Q 007537 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD 268 (599)
Q Consensus 189 vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~vl~~ 268 (599)
++.+|+ +++|..+.++|.... .++..+|+|++++++++++.+++. -..+++..+++.
T Consensus 141 ~v~~d~-~~~v~~~~ek~~~~~-------------------~~~~~~Giy~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 197 (217)
T cd04181 141 VVELDD-DGRVTRFVEKPTLPE-------------------SNLANAGIYIFEPEILDYIPEILP---RGEDELTDAIPL 197 (217)
T ss_pred EEEEcC-CCcEEEEEECCCCCC-------------------CCEEEEEEEEECHHHHHhhhhcCC---cccccHHHHHHH
Confidence 777885 589999999875321 356789999999999998877643 123455555555
Q ss_pred cccCCeeEEEeccccceeecc
Q 007537 269 DIMGYKIFTHEIHSSYAARID 289 (599)
Q Consensus 269 ~~~g~~I~~~~~~~~y~~~V~ 289 (599)
.+...+|++|.++ +||.+|+
T Consensus 198 l~~~~~v~~~~~~-g~w~dig 217 (217)
T cd04181 198 LIEEGKVYGYPVD-GYWLDIG 217 (217)
T ss_pred HHhcCCEEEEEcC-CEEecCC
Confidence 5555789999998 8999885
No 48
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.94 E-value=9.6e-26 Score=223.13 Aligned_cols=220 Identities=18% Similarity=0.340 Sum_probs=173.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcc-cCCCCCceEEEEe
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQPNFTVKTIE 109 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~-w~~~~~~~i~~v~ 109 (599)
|||||||.|+||+|+|..+||+|+|++|+|||+|++++|.++|+++|+|+++++.+.+.+|+.... | ++.+.+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~----~~~~~~~~ 76 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRG----GIRIYYVI 76 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcccc----CceEEEEE
Confidence 699999999999999999999999999999999999999999999999999988889999997533 3 34555666
Q ss_pred cCCcCCHHHHHHHHHHhccc-CCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCCce
Q 007537 110 SHNIISAGDALRLIYEQNVI-HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (599)
Q Consensus 110 ~~~~~~~g~alr~~~~~~~i-~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~ 188 (599)
+....|+++++... +..+ .++|++++||++.+.++.++++.|++. ++.+++++.+.. ...+++
T Consensus 77 ~~~~~G~~~~l~~a--~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~-----~~~~~~---- 140 (223)
T cd06915 77 EPEPLGTGGAIKNA--LPKLPEDQFLVLNGDTYFDVDLLALLAALRAS-----GADATMALRRVP-----DASRYG---- 140 (223)
T ss_pred CCCCCcchHHHHHH--HhhcCCCCEEEEECCcccCCCHHHHHHHHHhC-----CCcEEEEEEECC-----CCCcce----
Confidence 66778899888854 4455 456999999999899999999999864 366677776643 223555
Q ss_pred EEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHhhhhccccc
Q 007537 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD 268 (599)
Q Consensus 189 vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~dfv~~vl~~ 268 (599)
++.+|+ +++|+.+.+++... ++.+..+|||+++|+++..+.+. .+ ....|+++.++.
T Consensus 141 ~v~~d~-~~~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~l~~~~~~-~~-~~~~~~~~~l~~- 197 (223)
T cd06915 141 NVTVDG-DGRVIAFVEKGPGA-------------------APGLINGGVYLLRKEILAEIPAD-AF-SLEADVLPALVK- 197 (223)
T ss_pred eEEECC-CCeEEEEEeCCCCC-------------------CCCcEEEEEEEECHHHHhhCCcc-CC-ChHHHHHHHHHh-
Confidence 677875 58999999876421 24577899999999999887653 11 123355554433
Q ss_pred cccCCeeEEEeccccceeeccChhHHHHH
Q 007537 269 DIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (599)
Q Consensus 269 ~~~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (599)
..++++|+++ ++|.+|+++.+|..+
T Consensus 198 ---~~~v~~~~~~-~~~~dI~t~~dl~~a 222 (223)
T cd06915 198 ---RGRLYGFEVD-GYFIDIGIPEDYARA 222 (223)
T ss_pred ---cCcEEEEecC-CeEEecCCHHHHHhh
Confidence 3489999998 899999999999876
No 49
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=3.4e-24 Score=210.47 Aligned_cols=244 Identities=15% Similarity=0.226 Sum_probs=188.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcc----------
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE---------- 96 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~---------- 96 (599)
...+|||+|+|+||||.|.|...||-||||.++|+|+|+++.+..+|+++++++++++...|.+|+..+.
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~ 82 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRG 82 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhC
Confidence 4679999999999999999999999999999999999999999999999999999999999999986521
Q ss_pred --------cCCCCCceEEEEecCCcCCHHHHHHHHHHhcccCCC-EEEEcCCeechh---hHHHHHHHHHHhhccCCCce
Q 007537 97 --------WFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDTVSNM---LLTQALQEHKERKKKDNNAV 164 (599)
Q Consensus 97 --------w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~~d-fllv~gD~v~~~---~l~~ll~~h~~~~~~d~~a~ 164 (599)
.......++.++.|..+.|+|+|+.+ ++.++.++ |.|+.+|.+... .+.+|++.|.+.+ ..
T Consensus 83 K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~--A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g-----~s 155 (291)
T COG1210 83 KRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLC--AKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETG-----GS 155 (291)
T ss_pred HHHHHHHHHhcccCceEEEEecCCCCcchhHHHh--hhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhC-----Cc
Confidence 00123568899999999999999995 58888776 999999996553 6889999998875 22
Q ss_pred EEEEEeecCCCCCccCcccCCCceEEE----EeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEee
Q 007537 165 MTMIIKKSKPSPITHQSRLGTDELFMA----IDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240 (599)
Q Consensus 165 mT~~~~~~~~~~~~~~~r~g~~~~vv~----~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyic 240 (599)
.+.+.++.+. ..++|| ++. ++....+|..+.|||.+.. -.++|.-.|-|++
T Consensus 156 -vi~v~ev~~e---~v~kYG----vi~~g~~~~~~~~~v~~~VEKP~~~~-----------------APSnlai~GRYil 210 (291)
T COG1210 156 -VIGVEEVPPE---DVSKYG----VIDPGEPVEKGVYKVKGMVEKPKPEE-----------------APSNLAIVGRYVL 210 (291)
T ss_pred -EEEEEECCHH---HCcccc----eEecCccccCCeEEEEEEEECCCCCC-----------------CCcceeeeeeeec
Confidence 3456666544 667899 665 4433368999999996432 1367888899999
Q ss_pred ChhhHhhhccccchhhHHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhc
Q 007537 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQR 304 (599)
Q Consensus 241 sp~vl~lf~dnfd~q~ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~r 304 (599)
+|+++++++....-.- ..--+.+.+...+....+++|.+. |-..|+++...|.+++.++.-+
T Consensus 211 ~p~IFd~L~~~~~G~g-gEiQLTDai~~L~~~~~v~a~~~~-GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 211 TPEIFDILEETKPGAG-GEIQLTDAIKKLLKKEPVLAYVFE-GKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred CHHHHHHHhhCCCCCC-CEeeHHHHHHHHHhhCcEEEEEec-ccEEccCCcccHHHHHHHHHhh
Confidence 9999998876321000 000112223333345789999997 8889999999999999887654
No 50
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.91 E-value=2.5e-23 Score=207.64 Aligned_cols=223 Identities=20% Similarity=0.276 Sum_probs=155.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEec
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~ 110 (599)
|||||+|.|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++++|+... ..+.++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~-------~~~~~~~~ 73 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY-------PNIKFVYN 73 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc-------CCeEEEeC
Confidence 69999999999999999999999999999999999999999999999999999999999998752 13444444
Q ss_pred CC--cCCHHHHHHHHHHhcccCCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCCce
Q 007537 111 HN--IISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (599)
Q Consensus 111 ~~--~~~~g~alr~~~~~~~i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~ 188 (599)
+. ..|+++++... +.++.++|++++||++++. ++++.|.++ ++.+|+++.+.... ...+++
T Consensus 74 ~~~~~~g~~~s~~~~--~~~~~~~~lv~~~D~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~---- 136 (229)
T cd02523 74 PDYAETNNIYSLYLA--RDFLDEDFLLLEGDVVFDP---SILERLLSS-----PADNAILVDKKTKE---WEDEYV---- 136 (229)
T ss_pred cchhhhCcHHHHHHH--HHHcCCCEEEEeCCEecCH---HHHHHHHcC-----CCCCeEEEccCccc---ccccce----
Confidence 33 56788887754 5556667999999998866 466667654 35677777763211 111222
Q ss_pred EEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccc-hhh--HHHhhhhcc
Q 007537 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD-YQH--LRRHFVKGL 265 (599)
Q Consensus 189 vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd-~q~--ir~dfv~~v 265 (599)
+..+. .++++.+.+++.... ...++.+|+|+++++++..+.+... +.. ...+++..+
T Consensus 137 -~~~~~-~~~v~~~~~k~~~~~------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 196 (229)
T cd02523 137 -KDLDD-AGVLLGIISKAKNLE------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDA 196 (229)
T ss_pred -eeecC-ccceEeecccCCCcc------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 22221 267888888764211 1346789999999999887654221 000 122344444
Q ss_pred ccccccCCeeEEEeccccceeeccChhHHHHH
Q 007537 266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (599)
Q Consensus 266 l~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (599)
++..+...++.++.+..+||.+|+++++|..+
T Consensus 197 i~~l~~~~~~~v~~~~~~~w~dI~~~ed~~~a 228 (229)
T cd02523 197 LQRLISEEGVKVKDISDGFWYEIDDLEDLERA 228 (229)
T ss_pred HHHHHhhcCeeEEEcCCCCEEEeCCHHHHHhh
Confidence 44433323344444444899999999999876
No 51
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.90 E-value=1.4e-23 Score=205.26 Aligned_cols=186 Identities=25% Similarity=0.321 Sum_probs=136.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCc-chHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhc-ccCCC---CCceE
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQ---PNFTV 105 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~-PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~-~w~~~---~~~~i 105 (599)
|||||||+|+||+|+|..+||+|+|++|+ |||+|+|++|..+|+++|+|+++++.+++.+|+.+. .|... .++.+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLFI 80 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEEE
Confidence 69999999999999999999999999998 999999999999999999999999999999999763 35321 12223
Q ss_pred EEE----ecCCcCCHHHHHHHHHHhcccC----CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCC
Q 007537 106 KTI----ESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (599)
Q Consensus 106 ~~v----~~~~~~~~g~alr~~~~~~~i~----~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~ 177 (599)
.+. .++...|+++|++.. +..+. ++|+|++||++++.++.++++.|++++ +.+|+++.
T Consensus 81 ~~~~~~~~~~~~~Gta~al~~a--~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~-----~~~t~~~~------- 146 (200)
T cd02508 81 LPPQQRKGGDWYRGTADAIYQN--LDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESG-----ADITVVYK------- 146 (200)
T ss_pred eCcccCCCCCcccCcHHHHHHH--HHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcC-----CCEEEEEh-------
Confidence 221 124578999999865 44453 349999999999999999999998753 55554332
Q ss_pred ccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHh-hhccccchhh
Q 007537 178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQH 256 (599)
Q Consensus 178 ~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~-lf~dnfd~q~ 256 (599)
+++|+|+++++++. ++.... ..
T Consensus 147 -------------------------------------------------------~~~g~yi~~~~~~~~~l~~~~-~~- 169 (200)
T cd02508 147 -------------------------------------------------------ASMGIYIFSKDLLIELLEEDA-AD- 169 (200)
T ss_pred -------------------------------------------------------hcCEEEEEEHHHHHHHHHHHh-cc-
Confidence 45778888888774 333210 00
Q ss_pred HHHhhhhccccccccCCeeEEEeccccceeec
Q 007537 257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARI 288 (599)
Q Consensus 257 ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V 288 (599)
-..+++.++++..+...++++|.++ +||.+|
T Consensus 170 ~~~~~~~d~i~~l~~~~~v~~~~~~-g~w~di 200 (200)
T cd02508 170 GSHDFGKDIIPAMLKKLKIYAYEFN-GYWADI 200 (200)
T ss_pred CcchhHHHHHHHHhccCcEEEEEeC-CeEecC
Confidence 0123333444443344689999987 899875
No 52
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.88 E-value=6.8e-22 Score=197.44 Aligned_cols=218 Identities=15% Similarity=0.167 Sum_probs=150.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCch---HHHHHHHHhcccCCCCCceEEE
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS---KQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~---~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
+||||||+|+||+|+|..+||||+|++|+|||+|+|+.|..+|+++++|++++.. ..+..++... ..++.+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~----~~~~~i~- 75 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL----APNATVV- 75 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh----CCCCEEE-
Confidence 4899999999999999999999999999999999999999999999999886421 2233333221 1134553
Q ss_pred EecCCcCCHHHHHHHHHHhcccC--CCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCC
Q 007537 108 IESHNIISAGDALRLIYEQNVIH--GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~--~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~ 185 (599)
+.+....|+++++... +..+. ++|++++||++++.++..++..|.+.. ...++++.... ..+++
T Consensus 76 ~~~~~~~g~~~~l~~a--~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~~------~~~~~- 141 (231)
T cd04183 76 ELDGETLGAACTVLLA--ADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERD-----LDGGVLTFFSS------HPRWS- 141 (231)
T ss_pred EeCCCCCcHHHHHHHH--HhhcCCCCCEEEEecceeeccCHHHHHHHhhccC-----CceEEEEEeCC------CCCeE-
Confidence 3345678899888854 45563 459999999999999999999886542 33344333322 12455
Q ss_pred CceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChh-hH-hhhcc----ccchhhHHH
Q 007537 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPE-VL-SLFTD----NFDYQHLRR 259 (599)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~-vl-~lf~d----nfd~q~ir~ 259 (599)
++.+|+ +++|..+.+++.. +.+..+|+|+++++ ++ .++.+ ... ....
T Consensus 142 ---~v~~d~-~~~v~~~~ek~~~---------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~--~~~~ 194 (231)
T cd04183 142 ---YVKLDE-NGRVIETAEKEPI---------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDS--VNGE 194 (231)
T ss_pred ---EEEECC-CCCEEEeEEcCCC---------------------CCccEeEEEEECcHHHHHHHHHHHHhhccc--ccCc
Confidence 677775 6788888776421 34577899999987 32 33321 100 0011
Q ss_pred hhhhccccccc-cCCeeEEEeccccceeeccChhHH
Q 007537 260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSY 294 (599)
Q Consensus 260 dfv~~vl~~~~-~g~~I~~~~~~~~y~~~V~s~~sY 294 (599)
.++..+++..+ .|.+|+++.+++++|.+|+++++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 12334444433 456899999966899999999876
No 53
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.87 E-value=1.4e-21 Score=200.30 Aligned_cols=187 Identities=16% Similarity=0.207 Sum_probs=138.0
Q ss_pred cEEEEEeCCCCCCCCCCCC-CCCcccceeCC-cchHHHHHHHHHHC-CCcEEEEEccCc-hHHHHHHHHhcccCCCCCce
Q 007537 29 LQAILLADSFTTKFRPITL-ERPKVLLPLVN-VPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~-~~PK~LLpi~n-~PlI~y~Le~L~~~-gv~eV~vv~~~~-~~~i~~~l~~~~w~~~~~~~ 104 (599)
|++||||||.||||+|+|. .+||+|+|++| +|||+|++++|... ++++|+|++++. ...+++++.. + ...
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~--~----~~~ 74 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE--G----LPE 74 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh--c----CCC
Confidence 6899999999999999996 79999999999 99999999999998 599999999974 5667777764 1 124
Q ss_pred EEEEecCCcCCHHHHHHHHHHhcccC----CC-EEEEcCCeech--hhHHHHHHHHHHhhccCCCceEEEEEeecCCCCC
Q 007537 105 VKTIESHNIISAGDALRLIYEQNVIH----GD-FVLISGDTVSN--MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (599)
Q Consensus 105 i~~v~~~~~~~~g~alr~~~~~~~i~----~d-fllv~gD~v~~--~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~ 177 (599)
+.++.++..+|+++|+.... ..+. ++ ++|++||++.. .+|.++++.|.+..+ .++++|+.+++..+
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~--~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~--~~~~vt~gi~p~~~--- 147 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAA--LYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAE--EGYLVTFGIKPTRP--- 147 (274)
T ss_pred ceEEECCCCCCcHHHHHHHH--HHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHH--cCCEEEEEeeecCC---
Confidence 56677788899999988653 2222 23 88999999665 678888887765332 35789998887653
Q ss_pred ccCcccCCCceEEEEeCCC-C---eEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH
Q 007537 178 THQSRLGTDELFMAIDPNT-K---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (599)
Q Consensus 178 ~~~~r~g~~~~vv~~d~~~-~---rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl 245 (599)
.++|| ++..++.. + +|..|.|||+..... ..+.. ...+.++|||+++++++
T Consensus 148 --~t~yG----yI~~~~~~~~~~~~V~~f~EKP~~~~a~-----~~~~~------g~~~wNsGiyi~~~~~l 202 (274)
T cd02509 148 --ETGYG----YIEAGEKLGGGVYRVKRFVEKPDLETAK-----EYLES------GNYLWNSGIFLFRAKTF 202 (274)
T ss_pred --CCCeE----EEEeCCcCCCCceEEeEEEECcChHHHH-----HHhhc------CCeEEECceeeeeHHHH
Confidence 36788 88887532 3 899999998632110 01110 12356789999985443
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.82 E-value=3.1e-19 Score=177.69 Aligned_cols=218 Identities=19% Similarity=0.273 Sum_probs=152.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEec
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~ 110 (599)
|||||+|+|+||+| .+||+|+|++|+|||+|+|++|..+|+++|+|++++..+++.+++.. +.+.++.+
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~~~~~~~ 69 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PNVEFVLQ 69 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CCcEEEEC
Confidence 69999999999996 68999999999999999999999999999999999888899988864 23455666
Q ss_pred CCcCCHHHHHHHHHHhcccC---CCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCC
Q 007537 111 HNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (599)
Q Consensus 111 ~~~~~~g~alr~~~~~~~i~---~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~ 185 (599)
....|++++++.. ...+. +.|+++.||. +...++..+++.|++.. +.+++...+.. ++.+++
T Consensus 70 ~~~~g~~~ai~~a--~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~-----~~~~~~~~~~~-----~p~~~~- 136 (229)
T cd02540 70 EEQLGTGHAVKQA--LPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAG-----ADVTVLTAELE-----DPTGYG- 136 (229)
T ss_pred CCCCCCHHHHHHH--HHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcC-----CcEEEEEEEcC-----CCCCcc-
Confidence 6778899998865 44454 3499999998 56789999999987642 44455544433 344566
Q ss_pred CceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhH-hhhccccchhhHHHhhhhc
Q 007537 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVKG 264 (599)
Q Consensus 186 ~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl-~lf~dnfd~q~ir~dfv~~ 264 (599)
.+..|+ +++|..+.+++...... + ...+..+|+|+++++.+ .++........-..+++..
T Consensus 137 ---~~~~~~-~~~v~~~~ek~~~~~~~-----------~----~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 137 ---RIIRDG-NGKVLRIVEEKDATEEE-----------K----AIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred ---EEEEcC-CCCEEEEEECCCCChHH-----------H----hhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 555664 57899998876421000 0 02467899999997754 4443311100001233444
Q ss_pred cccccc-cCCeeEEEeccccce--eeccChh
Q 007537 265 LLLDDI-MGYKIFTHEIHSSYA--ARIDNYR 292 (599)
Q Consensus 265 vl~~~~-~g~~I~~~~~~~~y~--~~V~s~~ 292 (599)
+++..+ .|.+|+++..+ +|| ..|+++.
T Consensus 198 ~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~ 227 (229)
T cd02540 198 IIALAVADGLKVAAVLAD-DEEEVLGVNDRV 227 (229)
T ss_pred HHHHHHHCCCEEEEEEcC-CcceEecCCChH
Confidence 444433 46789999986 664 4566654
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.82 E-value=2e-19 Score=197.29 Aligned_cols=238 Identities=14% Similarity=0.173 Sum_probs=159.6
Q ss_pred cEEEEEeCCCCCCCCCCCCC-CCcccceeCC-cchHHHHHHHHHHCCCcEEEEEccCc-hHHHHHHHHhcccCCCCCce-
Q 007537 29 LQAILLADSFTTKFRPITLE-RPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFT- 104 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~-~PK~LLpi~n-~PlI~y~Le~L~~~gv~eV~vv~~~~-~~~i~~~l~~~~w~~~~~~~- 104 (599)
|.+||||||.||||+|||.. +||+|+|++| +|||+|+++.|...++++++|+++.. ...+++.+... +++
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~------~~~~ 74 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI------GKLA 74 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc------CCCc
Confidence 57999999999999999986 8999999987 89999999999999999999988753 34556666541 122
Q ss_pred EEEEecCCcCCHHHHHHHHHHhccc----C-CC-EEEEcCCee-ch-hhHHHHHHHHHHhhccCCCceEEEEEeecCCCC
Q 007537 105 VKTIESHNIISAGDALRLIYEQNVI----H-GD-FVLISGDTV-SN-MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (599)
Q Consensus 105 i~~v~~~~~~~~g~alr~~~~~~~i----~-~d-fllv~gD~v-~~-~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~ 176 (599)
..++.++..++||.|+.... .++ . ++ |+|++||++ .+ ..|.++++.+.+..+ .++++|+.+++..|
T Consensus 75 ~~~i~Ep~~~gTa~ai~~aa--~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~--~~~lvtlgi~p~~p-- 148 (468)
T TIGR01479 75 SNIILEPVGRNTAPAIALAA--LLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAA--EGKLVTFGIVPTHP-- 148 (468)
T ss_pred ceEEecccccCchHHHHHHH--HHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHh--cCCEEEEEecCCCC--
Confidence 34677788899999887532 222 2 34 889999974 44 568999888754322 24688888877553
Q ss_pred CccCcccCCCceEEEEeCC-----CCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeC----------
Q 007537 177 ITHQSRLGTDELFMAIDPN-----TKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICS---------- 241 (599)
Q Consensus 177 ~~~~~r~g~~~~vv~~d~~-----~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyics---------- 241 (599)
.++|| ++..++. .++|..|.|||+.... ...+. -.+-+.++|||+++
T Consensus 149 ---~t~YG----yI~~~~~~~~~~~~~V~~f~EKP~~~~a-----~~~l~------~g~~~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 149 ---ETGYG----YIRRGEPLAGEDVYQVQRFVEKPDLATA-----QAYLE------SGDYYWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred ---CCCce----EEEeCCccCCCCceEEeEEEECCChHHH-----HHHHh------cCCeEEEeeEEEEEHHHHHHHHHH
Confidence 36788 8888742 3689999999863211 01111 11246789999999
Q ss_pred --hhhHhhhccccch-------hhHHHhhhh---cc-ccc--cccCCeeEEEeccccceeeccChhHHHHH
Q 007537 242 --PEVLSLFTDNFDY-------QHLRRHFVK---GL-LLD--DIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (599)
Q Consensus 242 --p~vl~lf~dnfd~-------q~ir~dfv~---~v-l~~--~~~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (599)
|+++..+..-++- ..+..+..+ .+ +.. +....++++.... .+|.|+++|.++.++
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~-~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 211 HAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMD-AGWSDVGSWSALWEI 280 (468)
T ss_pred HCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCC-CCccccCCHHHHHHh
Confidence 5555544321110 000001111 00 000 1234567777665 789999999999876
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.79 E-value=9.4e-18 Score=169.13 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=155.0
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEE
Q 007537 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 28 ~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
++-+||||+|.++||. +|+|+|++|+|||+|+++.|..+|+++|+|++++ +.+.+++.. + ++.+.+
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~--~----~~~v~~ 67 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEA--F----GGEVVM 67 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH--c----CCEEEE
Confidence 5789999999999994 6999999999999999999999999999988753 667777754 1 345544
Q ss_pred EecCCcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccC
Q 007537 108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g 184 (599)
..+....|++.+...+........+ |+++.||+ +....+..+++.|+.+. ....++++....+........++
T Consensus 68 ~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T PRK05450 68 TSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPE----ADMATLAVPIHDAEEAFNPNVVK 143 (245)
T ss_pred CCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCC----CCeEeeeeecCCHHHhcCcCCCE
Confidence 4445556777655543322222335 78899998 56778999999887542 23333333331211000112222
Q ss_pred CCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhcccc--chhhH-HHhh
Q 007537 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF--DYQHL-RRHF 261 (599)
Q Consensus 185 ~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnf--d~q~i-r~df 261 (599)
+.+|. +|+|++|.++|.+..... .. .-.-.+++..+|||++++++++.+.+.. .+... ..++
T Consensus 144 -----v~~d~-~g~v~~~~e~~~~~~~~~------~~---~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (245)
T PRK05450 144 -----VVLDA-DGRALYFSRAPIPYGRDA------FA---DSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQ 208 (245)
T ss_pred -----EEeCC-CCcEEEecCCCCCCCCCc------cc---cccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHH
Confidence 34774 789999999874221100 00 0001257889999999999998776421 11111 1122
Q ss_pred hhccccccccCCeeEEEeccccceeeccChhHHHHHHHHh
Q 007537 262 VKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (599)
Q Consensus 262 v~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~di 301 (599)
++ ++. .|.+|+++.+++.+|.+|+++++|..+++.+
T Consensus 209 ~~-~~~---~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 209 LR-ALE---NGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred HH-HHH---CCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 21 222 5778999988745999999999999998643
No 57
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=4.7e-18 Score=164.58 Aligned_cols=222 Identities=19% Similarity=0.297 Sum_probs=146.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEc-cCchHHHHHHHHhcccCCCCCceE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFC-CAHSKQVIDYLENSEWFSQPNFTV 105 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~-~~~~~~i~~~l~~~~w~~~~~~~i 105 (599)
+.|+|||||||+|+||+| +.||||+.++|+|+|+|++++|.++|+++++||| ++..+.++.++.+. ++..
T Consensus 2 ~~~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~------~~~~ 72 (239)
T COG1213 2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKY------PFNA 72 (239)
T ss_pred CceeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcC------Ccce
Confidence 579999999999999999 8999999999999999999999999999999999 88899999999863 3456
Q ss_pred EEEecCCcC--CHHHHHHHHHHhcccCCCEEEEcCCeechhhH-HHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcc
Q 007537 106 KTIESHNII--SAGDALRLIYEQNVIHGDFVLISGDTVSNMLL-TQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (599)
Q Consensus 106 ~~v~~~~~~--~~g~alr~~~~~~~i~~dfllv~gD~v~~~~l-~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (599)
.++.++.+. .++..|. .++....++|+++.||+++.-.+ +.+++.- +. ++++...+ +
T Consensus 73 ~iv~N~~y~ktN~~~Sl~--~akd~~~~~fii~~sD~vye~~~~e~l~~a~---------~~-~li~d~~~--------~ 132 (239)
T COG1213 73 KIVINSDYEKTNTGYSLL--LAKDYMDGRFILVMSDHVYEPSILERLLEAP---------GE-GLIVDRRP--------R 132 (239)
T ss_pred EEEeCCCcccCCceeEEe--eehhhhcCcEEEEeCCEeecHHHHHHHHhCc---------CC-cEEEeccc--------c
Confidence 777766543 3445444 45677788899999999886643 4444321 11 22222211 2
Q ss_pred cCC-CceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhc----cccchhhH
Q 007537 183 LGT-DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFT----DNFDYQHL 257 (599)
Q Consensus 183 ~g~-~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~----dnfd~q~i 257 (599)
+.. ++...+.+ +.|++.....+-. ..+-.++||.+++++++..+. ++-.++.
T Consensus 133 ~~~~~ea~kv~~-e~G~i~~igK~l~---------------------e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~- 189 (239)
T COG1213 133 YVGVEEATKVKD-EGGRIVEIGKDLT---------------------EYDGEDIGIFILSDSIFEDTYELLVERSEYDY- 189 (239)
T ss_pred ccccCceeEEEe-cCCEEehhcCCcc---------------------cccceeeeeEEechHHHHHHHHHHhhhhhHHH-
Confidence 221 22223333 2678776654422 145577889889888665433 2222211
Q ss_pred HHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhhhcc
Q 007537 258 RRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW 305 (599)
Q Consensus 258 r~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil~rw 305 (599)
+.+.+... ...+.+-..+...+|..|++++.+..+.+.+...|
T Consensus 190 -~~~~~~~~----~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 190 -REVEKEAG----LPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred -HHHHHHhC----CceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 12222111 11111111122468999999999999988887765
No 58
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.77 E-value=4.9e-17 Score=163.30 Aligned_cols=227 Identities=16% Similarity=0.147 Sum_probs=149.9
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHC-CCcEEEEEccCchHHHHHHHHhcccCCCCCceEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~-gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
+.|||||+|.++||. ||+|+|++|+|||+|+++.|..+ |+++|+|++++ +.+.+++.. + ++++.+
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--~----~~~~~~ 67 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--F----GGKVVM 67 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--c----CCEEEE
Confidence 579999999999996 69999999999999999999999 99999998764 678888764 1 244443
Q ss_pred EecCCcCCHHHHHHHHHHhcccCC--C-EEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcc
Q 007537 108 IESHNIISAGDALRLIYEQNVIHG--D-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~~--d-fllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r 182 (599)
..+....|++.+...+. .+.. + |+++.||+ +...+|..+++.|+.. .++.+|+++.+.... . ...+
T Consensus 68 ~~~~~~~gt~~~~~~~~---~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~ 138 (239)
T cd02517 68 TSPDHPSGTDRIAEVAE---KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD----PGVDMATLATPISDE-E-ELFN 138 (239)
T ss_pred cCcccCchhHHHHHHHH---hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC----CCCCEEEEEEEcCCH-H-HccC
Confidence 33344567776444331 2332 4 89999997 6678999999988653 135667666554311 0 0002
Q ss_pred cCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccc--cchhhHHHh
Q 007537 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRRH 260 (599)
Q Consensus 183 ~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dn--fd~q~ir~d 260 (599)
++ ..-|.+|. +++|+.|.+++.+..... . .....+..+|||++++++++.+... +.+.. .+
T Consensus 139 ~~--~~~v~~~~-~~~v~~~~~~~~~~~~~~-----------~-~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~--~~ 201 (239)
T cd02517 139 PN--VVKVVLDK-DGYALYFSRSPIPYPRDS-----------S-EDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQ--IE 201 (239)
T ss_pred CC--CCEEEECC-CCCEEEecCCCCCCCCCC-----------C-CCCceeEEEEEEEECHHHHHHHHhCCCchhhh--hh
Confidence 22 11255664 578988887542110000 0 0013478899999999999976542 11111 11
Q ss_pred hhh--ccccccccCCeeEEEeccccceeeccChhHHHHHHH
Q 007537 261 FVK--GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK 299 (599)
Q Consensus 261 fv~--~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~ 299 (599)
.+. .++. .|.+|+++..+ ++|.+|+++++|..+.+
T Consensus 202 ~~~~~~~~~---~g~~v~~~~~~-~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 202 SLEQLRALE---NGYKIKVVETD-HESIGVDTPEDLERVEA 238 (239)
T ss_pred hHHHHHHHH---CCCceEEEEeC-CCCCCCCCHHHHHHHHh
Confidence 111 1121 56789999886 68999999999998763
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.71 E-value=1e-15 Score=153.55 Aligned_cols=225 Identities=16% Similarity=0.193 Sum_probs=147.4
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHC-CCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 28 ~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~-gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
++.|||||+|.++||. +|+|+|++|+|||+|+++.|.++ ++++|+|++++ +++++++.. + ++++.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~--~----~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA--F----GGKVV 67 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH--c----CCeEE
Confidence 4789999999999995 59999999999999999999999 89999998864 678888864 2 34444
Q ss_pred EEecCCcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcc-
Q 007537 107 TIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR- 182 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r- 182 (599)
+..+....+++.. ... ...+..+ |+++.||+ +...++..+++.|+... .+.+++++.+... ..+
T Consensus 68 ~~~~~~~~g~~~~-~~a--~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~----~~~~~~~~~~~~~-----~~~~ 135 (238)
T PRK13368 68 MTSDDHLSGTDRL-AEV--MLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDP----SINVATLCAPIST-----EEEF 135 (238)
T ss_pred ecCccCCCccHHH-HHH--HHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCC----CccceeEEEEcCC-----HHHh
Confidence 3333334455542 222 2223434 99999996 77889999999887532 2345555544321 011
Q ss_pred --cCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccc--cchhhHH
Q 007537 183 --LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLR 258 (599)
Q Consensus 183 --~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dn--fd~q~ir 258 (599)
++ ...+.+++ +|+++.+.++|....+. .. ....+.++|||+++++++..+.+. ++.+.+.
T Consensus 136 ~~p~--~~~~~~~~-~g~v~~~~~~~~~~~~~------------~~-~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~ 199 (238)
T PRK13368 136 ESPN--VVKVVVDK-NGDALYFSRSPIPSRRD------------GE-SARYLKHVGIYAFRRDVLQQFSQLPETPLEQIE 199 (238)
T ss_pred cCcC--CCEEEECC-CCCEEEeeCCCCCCCCC------------CC-CCceeEEEEEEEeCHHHHHHHHcCCCChhhhhh
Confidence 12 11135553 58898888653211000 00 012357899999999999987542 2211122
Q ss_pred H-hhhhccccccccCCeeEEEeccccceeeccChhHHHHHHH
Q 007537 259 R-HFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK 299 (599)
Q Consensus 259 ~-dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~ 299 (599)
. +++ .++. .|.+++++.. +++|.+|+++.+|..+..
T Consensus 200 ~~~~~-~~~~---~g~~v~~~~~-~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 200 SLEQL-RALE---HGEKIRMVEV-AATSIGVDTPEDLERVRA 236 (238)
T ss_pred hHHHH-HHHH---CCCceEEEEe-CCCCCCCCCHHHHHHHHH
Confidence 1 333 2322 5778999985 489999999999998754
No 60
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.65 E-value=8.8e-17 Score=162.25 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=86.0
Q ss_pred HHHhhhhccccccccCCeeEEEeccccceee-------ccChhHHHHHHHHhh---------hccccccCCCCccCCCCc
Q 007537 257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAAR-------IDNYRSYDIVSKDII---------QRWTYPYVPDVKFCGNRA 320 (599)
Q Consensus 257 ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~-------V~s~~sY~~as~dil---------~rw~~p~~p~~~~~~~~~ 320 (599)
+..+|+.++| .++++++++.+.++ .|..+ +.+|+.|..+++|++ .||++|++|+..|...+.
T Consensus 36 l~~~~~~~~L-~~~l~~~l~~~~~~-~~~~r~~~~~~~~~~~~~~~~i~~Di~~~~~~dpa~~~~~~pll~~~gf~a~~~ 113 (273)
T PRK11132 36 LKHENLGSAL-SYMLANKLASPIMP-AIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQA 113 (273)
T ss_pred cCCccHHHHH-HHHHHHHhccccCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCccccceeEEEEECCChHHHHH
Confidence 4679999999 77889999999998 78888 999999999999999 899999999887654434
Q ss_pred ceeee---------cceEECCCcEECCCCEECCCcEECCCCEECCCC--EEe-ceEECCCCEECCCcEEe
Q 007537 321 TKLER---------RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNS--KIS-DSVIGEGCTIGSNVLIE 378 (599)
Q Consensus 321 ~~~~~---------~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~--~I~-~svIG~~~~Ig~~~~I~ 378 (599)
|++.+ ...|+...+.+..++.|++++.||+++.|+.++ +|+ +++||++|.|..+++|.
T Consensus 114 yR~a~~l~~~~~~~la~~~~~~~~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiG 183 (273)
T PRK11132 114 YRIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLG 183 (273)
T ss_pred HHHHHHHHHCCCchhhhhhhhcceeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEe
Confidence 43333 345566666666677777777777777776543 332 34444444444444443
No 61
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.64 E-value=9.5e-16 Score=167.18 Aligned_cols=167 Identities=16% Similarity=0.244 Sum_probs=121.5
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCC-CCcccceeCC-cchHHHHHHHHHHCCCcEEEEEccC-chHHHHHHHHhcccCCCCC
Q 007537 26 RQPLQAILLADSFTTKFRPITLE-RPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENSEWFSQPN 102 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~-~PK~LLpi~n-~PlI~y~Le~L~~~gv~eV~vv~~~-~~~~i~~~l~~~~w~~~~~ 102 (599)
.++|.+||||||+||||+|+|.. +||+|+|++| +|||+++++.+...++.+.+|+++. +...+++.+.... .
T Consensus 3 ~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~-----~ 77 (478)
T PRK15460 3 QSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLN-----K 77 (478)
T ss_pred CCceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcC-----C
Confidence 34589999999999999999987 7999999976 7999999999999988888788875 4567777775421 0
Q ss_pred ceEEEEecCCcCCHHHHHHHHHH--hccc-C-CC-EEEEcCCee-chh-hHHHHHHHHHHhhccCCCceEEEEEeecCCC
Q 007537 103 FTVKTIESHNIISAGDALRLIYE--QNVI-H-GD-FVLISGDTV-SNM-LLTQALQEHKERKKKDNNAVMTMIIKKSKPS 175 (599)
Q Consensus 103 ~~i~~v~~~~~~~~g~alr~~~~--~~~i-~-~d-fllv~gD~v-~~~-~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~ 175 (599)
....++.++..+.|+.|+..... +..- . +. ++++++|++ .+. .|.+.++.-.+..+ .+.++|+.+++..|.
T Consensus 78 ~~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~--~~~lvt~GI~Pt~Pe 155 (478)
T PRK15460 78 LTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAE--AGKLVTFGIVPDLPE 155 (478)
T ss_pred ccccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHh--cCCEEEEecCCCCCC
Confidence 12356778888899988765421 1111 1 23 788999994 543 46666665544332 267999999987765
Q ss_pred CCccCcccCCCceEEEEeCC--------CCeEEEeeccCCC
Q 007537 176 PITHQSRLGTDELFMAIDPN--------TKQLLYYEDKADH 208 (599)
Q Consensus 176 ~~~~~~r~g~~~~vv~~d~~--------~~rvl~~~ekp~~ 208 (599)
+.|| ++...+. -.+|..|.|||+.
T Consensus 156 -----TgyG----YI~~g~~~~~~~~~~~~~V~~F~EKPd~ 187 (478)
T PRK15460 156 -----TGYG----YIRRGEVSAGEQDTVAFEVAQFVEKPNL 187 (478)
T ss_pred -----CCCC----eEEeCCccccccccCceEeeEEEeCCCH
Confidence 6788 6665532 1379999999973
No 62
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.4e-15 Score=151.54 Aligned_cols=164 Identities=16% Similarity=0.276 Sum_probs=118.8
Q ss_pred CcEEEEEeCCCCCCCCCCCC-CCCcccceeCC-cchHHHHHHHHHH-CCCcEEEEEccC-chHHHHHHHHhcccCCCCCc
Q 007537 28 PLQAILLADSFTTKFRPITL-ERPKVLLPLVN-VPMINYTLAWLEA-AGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNF 103 (599)
Q Consensus 28 ~l~aVILA~g~gtR~~PlT~-~~PK~LLpi~n-~PlI~y~Le~L~~-~gv~eV~vv~~~-~~~~i~~~l~~~~w~~~~~~ 103 (599)
.|.+||||||.|+||+||+. .+||++|++.+ +.|++.|++.+.. .++++++|+|+. |...+++.+...... ..
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~---~~ 77 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE---NA 77 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc---cc
Confidence 47899999999999999975 69999999965 9999999999999 678999999986 456677777651110 01
Q ss_pred eEEEEecCCcCCHHHHHHHHHHhccc--CCC--EEEEcCCe-echh-hHHHHHHHHHHhhccCCCceEEEEEeecCCCCC
Q 007537 104 TVKTIESHNIISAGDALRLIYEQNVI--HGD--FVLISGDT-VSNM-LLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (599)
Q Consensus 104 ~i~~v~~~~~~~~g~alr~~~~~~~i--~~d--fllv~gD~-v~~~-~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~ 177 (599)
.- ++.++..+.|+.|+.... .... .+| ++|++.|+ |.+. -|.+.++.-.+.. .++.++|+.+.+..|.
T Consensus 78 ~~-illEP~gRnTApAIA~aa-~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A--~~g~lVTfGI~Pt~Pe-- 151 (333)
T COG0836 78 AG-IILEPEGRNTAPAIALAA-LSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAA--EEGGIVTFGIPPTRPE-- 151 (333)
T ss_pred cc-eEeccCCCCcHHHHHHHH-HHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHH--HcCCEEEEecCCCCCc--
Confidence 11 677788888998887542 1111 124 89999999 4443 4666666554433 2458999999887754
Q ss_pred ccCcccCCCceEEEEeC-----CCCeEEEeeccCC
Q 007537 178 THQSRLGTDELFMAIDP-----NTKQLLYYEDKAD 207 (599)
Q Consensus 178 ~~~~r~g~~~~vv~~d~-----~~~rvl~~~ekp~ 207 (599)
+.|| ++...+ ...+|-.|.|||+
T Consensus 152 ---TGYG----YIe~G~~~~~~~~~~V~~FvEKPd 179 (333)
T COG0836 152 ---TGYG----YIETGESIAENGVYKVDRFVEKPD 179 (333)
T ss_pred ---cCcc----eeecCcccccCCceEeeeeeeCCC
Confidence 6777 554422 2457899999998
No 63
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.60 E-value=6e-15 Score=147.02 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=103.8
Q ss_pred EEeccccceeeccChhHHHHHHHHhhhccccccCCCCccCCCCcceeeecceEECCCcEECCCCEECCCcEECCCCEECC
Q 007537 277 THEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGS 356 (599)
Q Consensus 277 ~~~~~~~y~~~V~s~~sY~~as~dil~rw~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~ 356 (599)
++... +||.+| ++|.++++++|..+. +..+..... .....+++.++.|++++.|.+++.||.+|.|++
T Consensus 42 ~~~~~-gyW~Di---~~yl~an~diL~~~~-~~~~~~~~~-------~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~ 109 (231)
T TIGR03532 42 SGVLF-GEWEDI---EPFIEANKDKIKDYR-IENDRRNSA-------IPLLDLKNINARIEPGAIIRDQVIIGDNAVIMM 109 (231)
T ss_pred cEEEE-EeHHHH---HHHHHHhHhhhcceE-Eeecccccc-------cccccccccccEECCCCEEeCCeEECCCCEEec
Confidence 56665 899999 999999999999864 111100000 011123567788888888888888888888888
Q ss_pred CCEE-eceEECCCCEECCCcEE-eceEECCCCEECCCcEEec---------eEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 357 NSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRH---------VIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 357 ~~~I-~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~---------siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
++.| .+++||++|.|++++.| .+++||++++|+.+|+|.+ ++|+++|.||.+++|.+|++||.+..+.
T Consensus 110 ~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Ig 188 (231)
T TIGR03532 110 GAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVA 188 (231)
T ss_pred CcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEEC
Confidence 8888 57889999999999988 5888999999999998863 7888888888888888888888877665
No 64
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=2e-14 Score=133.86 Aligned_cols=107 Identities=21% Similarity=0.407 Sum_probs=86.3
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
|.|||||||+|+||.|||..+||+||.|.|+|||++++++|.++|+.+|+||+|+..+++ +||++. ..++.+
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdK-------y~vtLv 72 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDK-------YDVTLV 72 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHh-------cCeEEE
Confidence 579999999999999999999999999999999999999999999999999999988776 567662 467778
Q ss_pred ecCCcCCHHHHHHHHHHhcccCCCEEEEcCCeechh
Q 007537 109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNM 144 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i~~dfllv~gD~v~~~ 144 (599)
..++.......-....+++++.+ -.++.+|.+..-
T Consensus 73 yN~kY~~yNn~ySlyla~d~l~n-tYiidsDnyl~k 107 (231)
T COG4750 73 YNPKYREYNNIYSLYLARDFLNN-TYIIDSDNYLTK 107 (231)
T ss_pred eCchHHhhhhHHHHHHHHHHhcc-cEEeccchHhhh
Confidence 87776544444444455666654 456788876543
No 65
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.48 E-value=6.6e-13 Score=128.04 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=89.0
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
|.|||||||+|+||++ .||+|+|++|+|||+|+++.|..+++++|+|+++++.+.++.|+.... . .++
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~------~--~~~ 68 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY------K--DYK 68 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC------c--EEE
Confidence 6899999999999985 799999999999999999999999999999999988888999987521 1 112
Q ss_pred ecCCcCCHHHHHHHHHHhcccCCCEEEEcCCe--echhhHHHHHHHHHHhh
Q 007537 109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHKERK 157 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i~~dfllv~gD~--v~~~~l~~ll~~h~~~~ 157 (599)
.....|....+..........++|++++||+ +....+..+++.|....
T Consensus 69 -~~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 1233454444443322111245699999998 67889999999887653
No 66
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.47 E-value=6.7e-13 Score=125.62 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=54.7
Q ss_pred ecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe---------
Q 007537 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR--------- 395 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~--------- 395 (599)
.+++++++++.|++++.|+++++||++|.|++++.|.+++||++|.|+.++.+.+++||+++.|++++++.
T Consensus 33 ~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~ 112 (163)
T cd05636 33 EGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPV 112 (163)
T ss_pred eCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCcce
Confidence 44455555555555555555555555555555555555555555555555555555555555555555552
Q ss_pred ----------------ceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 396 ----------------HVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 396 ----------------~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+++|++++.||.++.|.+|++||.+..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ 157 (163)
T cd05636 113 KVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVY 157 (163)
T ss_pred EEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEEC
Confidence 24555555555555555555555554433
No 67
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.3e-13 Score=148.49 Aligned_cols=104 Identities=31% Similarity=0.404 Sum_probs=90.6
Q ss_pred eecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEE-eceEECCC
Q 007537 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDG 402 (599)
Q Consensus 324 ~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siI~~~ 402 (599)
...++.+|.++.|+.++.| .|++||+||.||.+++|.+|.||++|+||+||+|++|+||++|.|++||++ .+||||.+
T Consensus 330 v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~ 408 (673)
T KOG1461|consen 330 VGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFG 408 (673)
T ss_pred ccceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeee
Confidence 3456677778888888888 699999999999999999999999999999999999999999999999999 48999999
Q ss_pred CEECCCCEECCCCEECCCCCcCCChhh
Q 007537 403 VIMKAGAVLKPGVVLSFKPTVHDSDEE 429 (599)
Q Consensus 403 ~~Ig~~~~I~~g~vig~~~~~~~~~~~ 429 (599)
|+||++-+|..+++| ..|...+++||
T Consensus 409 VVv~~~~~l~~ns~~-~~p~~eesdee 434 (673)
T KOG1461|consen 409 VVVGRNFVLPKNSKV-RQPTTEESDEE 434 (673)
T ss_pred eEeCCCccccccccc-cCCcccccchh
Confidence 999999999999888 44555555444
No 68
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.43 E-value=1.9e-12 Score=122.48 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=84.5
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCD 401 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~ 401 (599)
...+++++++++.|++++.|.++++||++|.|++++.|+ +++||++|.|+++++|.+|+|++++.|+.++.+.+++|++
T Consensus 13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~ 92 (163)
T cd05636 13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE 92 (163)
T ss_pred EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECC
Confidence 445679999999999999999999999999999999995 7999999999999999999999999999999999999999
Q ss_pred CCEECCCCEEC
Q 007537 402 GVIMKAGAVLK 412 (599)
Q Consensus 402 ~~~Ig~~~~I~ 412 (599)
++.|++++++.
T Consensus 93 ~~~I~~~~~i~ 103 (163)
T cd05636 93 NVNLGAGTITA 103 (163)
T ss_pred CCEECCCcEEc
Confidence 99999998774
No 69
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.42 E-value=1e-12 Score=127.23 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=83.1
Q ss_pred eEECCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceE
Q 007537 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI-----EGSYIWDNVIIEDGCELRHVI 398 (599)
Q Consensus 328 ~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I-----~~s~I~~~v~Ig~~~~I~~si 398 (599)
..+++++.|++++.|.+++.||++|.|+++++|. .++||++|.||++|+| .+|+|+++++|+++|+|.+|+
T Consensus 9 p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~si 88 (192)
T TIGR02287 9 PVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCI 88 (192)
T ss_pred CcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCE
Confidence 3467888888888888889999999999999884 4789999999999998 368999999999999999999
Q ss_pred ECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 399 VCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 399 I~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
|++++.||.+++|.++++||.++.+..
T Consensus 89 Ig~~~~IG~ga~I~~g~~IG~~s~Vga 115 (192)
T TIGR02287 89 VGRNALVGMNAVVMDGAVIGENSIVAA 115 (192)
T ss_pred ECCCCEECCCcccCCCeEECCCCEEcC
Confidence 999999998888888888888876653
No 70
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.40 E-value=1e-12 Score=134.03 Aligned_cols=65 Identities=31% Similarity=0.439 Sum_probs=29.4
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEE-eceEECCCCEECCCcEE
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCEL 394 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I 394 (599)
+++++.|+++++|++++.||++|+|+++++| .++.||++|.|++||+| +++.|+++|.|+.|++|
T Consensus 114 i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 114 IGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred cCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence 3344444444444444444444444444444 24444444444444444 23445555555555444
No 71
>PLN02917 CMP-KDO synthetase
Probab=99.39 E-value=3.4e-11 Score=124.60 Aligned_cols=236 Identities=14% Similarity=0.126 Sum_probs=143.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
+++.+||+|+|.++||. +|+|+|++|+|||+|+++.+..++..+.+|+ +.+.+.+.+++... ++.+.
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~------~v~vi 112 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF------GADVI 112 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc------CCEEE
Confidence 57889999999999995 5999999999999999999998865444333 35567888887641 23332
Q ss_pred EEecCCcCCHHHHHHHHHHhcccC--CC-EEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCc
Q 007537 107 TIESHNIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (599)
Q Consensus 107 ~v~~~~~~~~g~alr~~~~~~~i~--~d-fllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (599)
...+....|++.+... ...+. .| ++++.||. +....+..+++.+++.. .....|+++. ..+. .+.
T Consensus 113 ~~~~~~~~GT~~~~~a---~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~---~~iv~t~~~~-~~~~---~~~ 182 (293)
T PLN02917 113 MTSESCRNGTERCNEA---LKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP---DAVFSTAVTS-LKPE---DAS 182 (293)
T ss_pred eCCcccCCchHHHHHH---HHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcC---CceEEEEeee-cCHH---Hhc
Confidence 2222345577776432 22333 34 88899999 77779999999885421 1223333332 2221 334
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccc--cchhhHHH
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRR 259 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dn--fd~q~ir~ 259 (599)
.|| ...++.|. +|++++|...+-+..+.. .. . .. .-.+...|||.+..+.|..|..- -..| +.
T Consensus 183 ~yg--rv~vv~~~-~g~alyfsr~~Ipe~kd~--~~----~--~~--~i~~~n~Giy~f~~~~L~~l~~l~~~n~e--~e 247 (293)
T PLN02917 183 DPN--RVKCVVDN-QGYAIYFSRGLIPYNKSG--KV----N--PQ--FPYLLHLGIQSYDAKFLKIYPELPPTPLQ--LE 247 (293)
T ss_pred CCC--ceEEEECC-CCeEEEeecCcCCcCCCc--cc----c--cc--cceEEEEEEEEeCHHHHHHHHcCCCCccc--ch
Confidence 455 22224664 678776664321111100 00 0 00 01356899999999999876531 1111 11
Q ss_pred hhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHhh
Q 007537 260 HFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDII 302 (599)
Q Consensus 260 dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~dil 302 (599)
.++..+. ....|.+|.+.... .-...|+|+..+..+.+-+-
T Consensus 248 ~yLtdl~-~le~G~~i~~~~~~-~~~~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 248 EDLEQLK-VLENGYKMKVIKVD-HEAHGVDTPEDVEKIEALMR 288 (293)
T ss_pred hccHHHH-HHhCCCceEEEEeC-CCCCCCCCHHHHHHHHHHHH
Confidence 2233332 11367889888775 34569999999998877543
No 72
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.39 E-value=3.3e-12 Score=119.89 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=72.2
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceEEC
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI-----EGSYIWDNVIIEDGCELRHVIVC 400 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I-----~~s~I~~~v~Ig~~~~I~~siI~ 400 (599)
++.++.+.+++.|.+++.||++|.|+++++|. .++||++|.|+++|+| .+++|+++++|+.+++|.+++|+
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig 82 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIG 82 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEEC
Confidence 34566677777777777777777777777774 3778888888888888 45788888888888888888888
Q ss_pred CCCEECCCCEECCCCEECCCCCcC
Q 007537 401 DGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 401 ~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+++.|+.+++|.++++|+.+..+.
T Consensus 83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig 106 (155)
T cd04745 83 RNALVGMNAVVMDGAVIGEESIVG 106 (155)
T ss_pred CCCEECCCCEEeCCCEECCCCEEC
Confidence 888888887777777777776655
No 73
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.39 E-value=2.2e-12 Score=106.67 Aligned_cols=77 Identities=30% Similarity=0.411 Sum_probs=48.7
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 348 Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
||+++.|++++.|.+++||++|.||++++|.+++|+++++|+++|.|.+++|++++.|+++++|.++++|+.+..++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 45555555555555566666666666666666666666666666666666666666666666666666666655443
No 74
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.38 E-value=3.7e-12 Score=123.83 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=85.8
Q ss_pred eEECCCcEECCCCEECCCcEECCCCEECCCCEEec----eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceE
Q 007537 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVI 398 (599)
Q Consensus 328 ~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----svIG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~si 398 (599)
..+++++.|++++.|.+++.||++|.|+++++|+. ++||++|.||++|+|+ +++|+++++||.+|.|.+|+
T Consensus 11 p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~v 90 (196)
T PRK13627 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCV 90 (196)
T ss_pred CccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEE
Confidence 34678888899998888899999999999999953 5899999999999995 47899999999999999999
Q ss_pred ECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 399 VCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 399 I~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
|+++|.||.+++|.+|++||.++.+..
T Consensus 91 IG~~v~IG~ga~V~~g~~IG~~s~Vga 117 (196)
T PRK13627 91 IGRDALVGMNSVIMDGAVIGEESIVAA 117 (196)
T ss_pred ECCCCEECcCCccCCCcEECCCCEEcC
Confidence 999999999999988899888876653
No 75
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.38 E-value=2.8e-12 Score=105.78 Aligned_cols=77 Identities=49% Similarity=0.985 Sum_probs=66.6
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 348 Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
||+++.|++++.|.+++||++|.||++++|.++.|++++.|+++++|.+++|++++.|+++++|+++++|+.+..+.
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 67777777788887888999999999999999999999999999999999999999999999999889888876543
No 76
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.38 E-value=4e-12 Score=105.82 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=50.5
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCC
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAG 408 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~ 408 (599)
+++++.|++++.|. ++.||++|.|++++.|.+++|+++|.||.+++|.+|+|++++.|++++.|.+|+|+++++|+++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~ 79 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAG 79 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCC
Confidence 34556666666663 5666666666666666666666666666666666666666666666666666666666666554
No 77
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.37 E-value=6.3e-12 Score=118.08 Aligned_cols=109 Identities=24% Similarity=0.391 Sum_probs=85.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEec
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~ 110 (599)
|||||||.|+||+ .||+|+|++|+|||+|+++.+..+++++|+|++++ +++..++.. ..+.++..
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~--------~~~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER--------YGIKVVVD 65 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT--------TTSEEEE-
T ss_pred CEEECCcCcccCC-----CCccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc--------cCceEEEe
Confidence 7999999999997 39999999999999999999999999999999987 566666643 12444544
Q ss_pred C-CcCCHHHHHHHHHHhccc--CCCEEEEcCCe--echhhHHHHHHHHHHh
Q 007537 111 H-NIISAGDALRLIYEQNVI--HGDFVLISGDT--VSNMLLTQALQEHKER 156 (599)
Q Consensus 111 ~-~~~~~g~alr~~~~~~~i--~~dfllv~gD~--v~~~~l~~ll~~h~~~ 156 (599)
+ ...|...+++.... .+ .+.|++++||+ +....+..+++.+.+.
T Consensus 66 ~~~~~G~~~sl~~a~~--~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~ 114 (160)
T PF12804_consen 66 PEPGQGPLASLLAALS--QLPSSEPVLVLPCDQPFLSPELLRRLLEALEKS 114 (160)
T ss_dssp STSSCSHHHHHHHHHH--TSTTSSEEEEEETTETTS-HHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHHHHH--hcccCCCcEEEeCCccccCHHHHHHHHHHHhcc
Confidence 3 24788888886643 34 34599999999 4567899999988764
No 78
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.35 E-value=1.1e-11 Score=126.54 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=51.6
Q ss_pred ceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe--------------------ceEECCC
Q 007537 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE--------------------GSYIWDN 385 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~--------------------~s~I~~~ 385 (599)
++.+++++.|+++|+|++++.||++|.|+++++| .+++||++|.|++|++|. +++|+++
T Consensus 129 ~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~ 208 (338)
T COG1044 129 GVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDD 208 (338)
T ss_pred CCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCc
Confidence 3344444444444444445555555555555555 246666666666666663 2456666
Q ss_pred CEECCCcEEe-----ceEECCCCEECCCCEECCCCEECCCCC
Q 007537 386 VIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKPT 422 (599)
Q Consensus 386 v~Ig~~~~I~-----~siI~~~~~Ig~~~~I~~g~vig~~~~ 422 (599)
|.||.|++|. +++|++++.|...+.|+.+|.||.++.
T Consensus 209 VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~ 250 (338)
T COG1044 209 VEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCI 250 (338)
T ss_pred eEEcccceeccccccCceecCCcEEcceeEEccccEECCCcE
Confidence 6666666663 255555555555555555555555543
No 79
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.35 E-value=1.7e-11 Score=115.08 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=82.9
Q ss_pred eeecceEECCCcEECCCCEECC---CcEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007537 323 LERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I-----~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (599)
...+++++++++.|+++|.|.+ ++.||++|.|++++.| .+++||++|.|+.+++|.+++|++++.|+.+|.|
T Consensus 14 ~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I 93 (155)
T cd04745 14 VLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVV 93 (155)
T ss_pred EEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEE
Confidence 3456788999999999998865 5899999999999999 5799999999999999999999999999999988
Q ss_pred e-ceEECCCCEECCCCEECCCCEECCCC
Q 007537 395 R-HVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 395 ~-~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
. +++|+++++|++++.|.++..|..+.
T Consensus 94 ~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~ 121 (155)
T cd04745 94 MDGAVIGEESIVGAMAFVKAGTVIPPRS 121 (155)
T ss_pred eCCCEECCCCEECCCCEeCCCCEeCCCC
Confidence 5 47777777777777666666665554
No 80
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.34 E-value=6.2e-12 Score=104.66 Aligned_cols=78 Identities=36% Similarity=0.629 Sum_probs=72.8
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 347 ~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
.||+++.|++++.|.+++||++|.|+++++|.+++|++++.|+.+|.|.+|+|++++.|+++++|. +|+|+.+..++.
T Consensus 1 ~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~-~~ii~~~~~i~~ 78 (81)
T cd04652 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK-DCLVGSGYRVEA 78 (81)
T ss_pred CccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-cCEECCCcEeCC
Confidence 378888888899998999999999999999999999999999999999999999999999999996 899999987764
No 81
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.34 E-value=1.1e-11 Score=125.97 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCceeeeecccccccCCChhHhhcccccCC
Q 007537 549 FEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGFFL 596 (599)
Q Consensus 549 F~~e~~~~~~r~~~~~~~~d~~~le~~~~r~a~n~~~~~~~~~~~~~~ 596 (599)
+..+....+...|+.+.+++..+.+|...-. ...++++...||.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~ 248 (254)
T cd03351 205 EIRALKRAYRILYRSGLTLEEALEELEEEAP----DSPEVEELVDFIR 248 (254)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhcC----CCHHHHHHHHHHH
Confidence 3366666666666666666665555443311 2445555666653
No 82
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=1.2e-11 Score=117.26 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=66.2
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCcEEec-----------eEECCCCEECCCcEE
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----------SYIWDNVIIEDGCEL 394 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~~-----------s~I~~~v~Ig~~~~I 394 (599)
+++++.|++++.|.+++.||++|.|++++.|. .++||++|.|+++|+|.+ +.|++++.|..++.|
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 45666677777777777777777777777773 357777777777777743 346667777777777
Q ss_pred eceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 395 RHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 395 ~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
.+++||++|.||.+++|.+|++||.++.+.
T Consensus 82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~Ig 111 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIG 111 (164)
T ss_pred EeeEECCCCEEeCCCEECCCCEECCCCEEe
Confidence 777777777777777777677777666555
No 83
>PLN02472 uncharacterized protein
Probab=99.33 E-value=1.1e-11 Score=124.21 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=87.6
Q ss_pred EECCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCcEEe-----------ceEECCCCEECCCcE
Q 007537 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------GSYIWDNVIIEDGCE 393 (599)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~-----------~s~I~~~v~Ig~~~~ 393 (599)
.++.++.|.+++.|.+++.||.++.|+++++|. ..+||++|.||++|+|+ +++||++|+||.+|.
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~ 140 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSL 140 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcE
Confidence 467888999999999999999999999999884 37999999999999994 589999999999999
Q ss_pred EeceEECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 394 LRHVIVCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 394 I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
|.+|+|+++|.||.+++|.+|++|+.++.+..
T Consensus 141 L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~ 172 (246)
T PLN02472 141 LRSCTIEPECIIGQHSILMEGSLVETHSILEA 172 (246)
T ss_pred ECCeEEcCCCEECCCCEECCCCEECCCCEECC
Confidence 99999999999999999999999999987764
No 84
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=1e-11 Score=102.68 Aligned_cols=77 Identities=27% Similarity=0.430 Sum_probs=70.0
Q ss_pred EECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-eEECCCCEEC
Q 007537 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIMK 406 (599)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siI~~~~~Ig 406 (599)
|++.++.|++++.|.+ +.||++|.|++++.|.+++||++|.|+++++|.+++|++++.|++++.|.+ ++|+++++|+
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 5778899999999976 999999999999999999999999999999999999999999999999876 7777776665
No 85
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.32 E-value=1.3e-11 Score=125.75 Aligned_cols=102 Identities=23% Similarity=0.208 Sum_probs=77.3
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe-------------ceEECCCCEE
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-------------GSYIWDNVII 388 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~-------------~s~I~~~v~I 388 (599)
+..+...+++++.|++.|.|++++.||++|.|+++++| ++++||++|.|++++.|. .+.|+++++|
T Consensus 10 ~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I 89 (262)
T PRK05289 10 IVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTI 89 (262)
T ss_pred EECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEE
Confidence 44556677777777888888888888888888888887 478888888888888885 3788888888
Q ss_pred CCCcEEec--------eEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 389 EDGCELRH--------VIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 389 g~~~~I~~--------siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+++|+|.+ ++||+++.|+.++.|+.+|+||.++.+.
T Consensus 90 ~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~ 133 (262)
T PRK05289 90 REFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILA 133 (262)
T ss_pred CCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEEC
Confidence 88888854 4677777777777777667766665443
No 86
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.32 E-value=1.2e-11 Score=125.60 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=61.5
Q ss_pred eeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEe--------ce
Q 007537 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE--------GS 380 (599)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~--------~s 380 (599)
....++++++.++.|+++|.|++++.||++|.|++++.|+ +++||++|.|+++|+|. .+
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~ 103 (254)
T cd03351 24 CVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVT 103 (254)
T ss_pred cEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCce
Confidence 3444556666666666666666667777777777777664 46677777777777774 25
Q ss_pred EECCCCEECCCcEE-eceEECCCCEECCCCEECCCCEECCCC
Q 007537 381 YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 381 ~I~~~v~Ig~~~~I-~~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
+||+++.|+.+++| .+|+||+++.|+.++.|..+|+||.++
T Consensus 104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~ 145 (254)
T cd03351 104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYA 145 (254)
T ss_pred EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCc
Confidence 66666666666666 355566655555554444444444443
No 87
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=1.7e-11 Score=101.79 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=46.4
Q ss_pred CCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-eEECCCCEE
Q 007537 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIM 405 (599)
Q Consensus 331 ~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siI~~~~~I 405 (599)
++++.|++++.|+++++||++|+|++++.|.+++|+++|.|+++++|.++++++++.|++++.+.. ++|+++++|
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i 78 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTI 78 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEE
Confidence 455566666666666666666666666666666666666666666666666666666666666543 444444443
No 88
>PLN02296 carbonate dehydratase
Probab=99.31 E-value=1.4e-11 Score=125.24 Aligned_cols=95 Identities=27% Similarity=0.283 Sum_probs=62.0
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEE
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------GSYIWDNVIIEDGCEL 394 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~-----------~s~I~~~v~Ig~~~~I 394 (599)
++.++.|.+++.|.+++.||++|.|+++++|. +++||++|.|+++|+|+ +++|+++|+|+.+|+|
T Consensus 55 I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI 134 (269)
T PLN02296 55 VDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL 134 (269)
T ss_pred cCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence 45556666666666666666666666666663 23677777777777663 4567777777777777
Q ss_pred eceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 395 RHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 395 ~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
.+|+|+++|.||.+++|.+|++|+.++.+.
T Consensus 135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~Ig 164 (269)
T PLN02296 135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVA 164 (269)
T ss_pred cCCEECCCcEECCCcEECCCeEECCCCEEC
Confidence 666666666666666666666666665544
No 89
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.30 E-value=2e-11 Score=114.43 Aligned_cols=95 Identities=23% Similarity=0.155 Sum_probs=73.6
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEec----eEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEEC
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRHVIVC 400 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----svIG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~siI~ 400 (599)
+++++.|.+++.|.+++.||++|.|++++.|.. .+||++|.|+++|.|.. ++||++++|+.+|.+.+++|+
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 82 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVG 82 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEEC
Confidence 456677777777777788888888888887754 48888888888888854 788888888888888888888
Q ss_pred CCCEECCCCEECCCCEECCCCCcC
Q 007537 401 DGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 401 ~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+++.|+.++.|.++++|+.+..+.
T Consensus 83 ~~~~Ig~~~~i~~~~~Ig~~~~vg 106 (154)
T cd04650 83 NYVIVGMGAILLNGAKIGDHVIIG 106 (154)
T ss_pred CCCEEcCCCEEeCCCEECCCCEEC
Confidence 888888888777777777776554
No 90
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.30 E-value=3e-11 Score=117.12 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=80.2
Q ss_pred eeecceEECCCcEECCCCEECC---CcEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007537 323 LERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I-----~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (599)
...++++++.++.|.++|+|.+ .++||.+|.|+++|+| .+|+||++|+||++++|++|+|++++.||.+++|
T Consensus 22 ~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I 101 (192)
T TIGR02287 22 VLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVV 101 (192)
T ss_pred EEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCccc
Confidence 4557889999999999999864 5899999999999999 4799999999999999999999999999999887
Q ss_pred e-ceEECCCCEECCCCEECCCCEECCC
Q 007537 395 R-HVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 395 ~-~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
. +++|++++.|++++.|.++..|..+
T Consensus 102 ~~g~~IG~~s~Vgags~V~~~~~ip~~ 128 (192)
T TIGR02287 102 MDGAVIGENSIVAASAFVKAGAEMPAQ 128 (192)
T ss_pred CCCeEECCCCEEcCCCEECCCCEECCC
Confidence 4 4666666666666666555554443
No 91
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.30 E-value=3e-11 Score=117.52 Aligned_cols=101 Identities=23% Similarity=0.289 Sum_probs=89.3
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECC
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCD 401 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~ 401 (599)
+..+++++++++.|++++.|++++.||++|.|++++.|.++.||++|.|+++++|.+++|+++++|++++.|. +++|++
T Consensus 11 ~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~ 90 (193)
T cd03353 11 YIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGE 90 (193)
T ss_pred EEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999996 789999
Q ss_pred CCEECCCCEECCCCEECCCCCcC
Q 007537 402 GVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 402 ~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
++.|++++.+. +++|+.++.+.
T Consensus 91 ~~~Ig~~~~i~-~s~ig~~~~i~ 112 (193)
T cd03353 91 GVHIGNFVEIK-KSTIGEGSKAN 112 (193)
T ss_pred CCEECCcEEEe-cceEcCCCEec
Confidence 99998888775 56666665544
No 92
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.29 E-value=3.4e-11 Score=122.27 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=54.3
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEe--------ceE
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE--------GSY 381 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~--------~s~ 381 (599)
...+++.+++++.|+++|.|.+++.||++|.|+++++|+ +++||++|.|+++|+|. .++
T Consensus 24 ~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~ 103 (254)
T TIGR01852 24 IVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTR 103 (254)
T ss_pred EECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEE
Confidence 334445555555555555555556666666666666664 35666666666666664 235
Q ss_pred ECCCCEECCCcEE-eceEECCCCEECCCCEECCCCEECCCC
Q 007537 382 IWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 382 I~~~v~Ig~~~~I-~~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
|+++++|+.+++| .+|+|++++.|+.++.|..+|+||.++
T Consensus 104 IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~ 144 (254)
T TIGR01852 104 IGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYA 144 (254)
T ss_pred ECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCc
Confidence 5555555555555 345555555555544444444444443
No 93
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.29 E-value=2.2e-11 Score=106.41 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=70.6
Q ss_pred cEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECC
Q 007537 334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP 413 (599)
Q Consensus 334 ~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~ 413 (599)
++|++++.| .+++||.+|.|+ ++.|.+|+||++|.||++++|.+|+|++++.|+++|.|.+|+|++++.|+++++|.+
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence 456778888 578999999999 899999999999999999999999999999999999999999988888888877765
Q ss_pred CC
Q 007537 414 GV 415 (599)
Q Consensus 414 g~ 415 (599)
+.
T Consensus 80 ~~ 81 (104)
T cd04651 80 DP 81 (104)
T ss_pred Cc
Confidence 43
No 94
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.29 E-value=2.7e-11 Score=123.09 Aligned_cols=101 Identities=21% Similarity=0.205 Sum_probs=71.4
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe-------------ceEECCCCEE
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-------------GSYIWDNVII 388 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~-------------~s~I~~~v~I 388 (599)
+..+.+++++++.|++++.|++++.||+++.|++++.| ++++||++|.|+++++|. +++|+++++|
T Consensus 6 ~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I 85 (254)
T TIGR01852 6 IIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTI 85 (254)
T ss_pred EeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEE
Confidence 34456667777777777777777777777777777777 467888888888888885 4778888888
Q ss_pred CCCcEEe--------ceEECCCCEECCCCEECCCCEECCCCCc
Q 007537 389 EDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKPTV 423 (599)
Q Consensus 389 g~~~~I~--------~siI~~~~~Ig~~~~I~~g~vig~~~~~ 423 (599)
+++|+|. .++||+++.|+.++.|..+|+||.++.+
T Consensus 86 ~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i 128 (254)
T TIGR01852 86 REFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVIL 128 (254)
T ss_pred CCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEE
Confidence 8887774 3466776666666666555555555443
No 95
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.28 E-value=6.5e-11 Score=111.00 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=87.1
Q ss_pred cCCCCccCCCCcceeeecceEECCCcEECCCCEECCC---cEECCCCEECCCCEEec-----eEECCCCEECCCcEEece
Q 007537 309 YVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-----SVIGEGCTIGSNVLIEGS 380 (599)
Q Consensus 309 ~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-----svIG~~~~Ig~~~~I~~s 380 (599)
.+++..+... .....+++.+++++.|.+++.|.+. +.||++|.|++++.|.. ++||++|.|+.+++|.++
T Consensus 2 ~~~~~~~i~~--~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~ 79 (154)
T cd04650 2 RISPKAYVHP--TSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGA 79 (154)
T ss_pred ccCCCeEECC--CCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECc
Confidence 3444444332 2335577889999999999988765 79999999999999953 899999999999999999
Q ss_pred EECCCCEECCCcEEe-ceEECCCCEECCCCEECCCCEECCCC
Q 007537 381 YIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 381 ~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
.|+++++|+.+|.+. +++|+++++|++++.|.++..++.+.
T Consensus 80 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~ 121 (154)
T cd04650 80 KVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYS 121 (154)
T ss_pred EECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCC
Confidence 999999999999874 57777777777777666665555543
No 96
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.28 E-value=7.1e-11 Score=123.79 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=35.8
Q ss_pred ecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe-ceEECCCCEECCCcEE
Q 007537 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL 394 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I 394 (599)
.+...+++++.|+++++|++++.||.+|.|++++.| .+++||++|.|+++++|. ++.|+++++|+++|+|
T Consensus 101 ~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 101 DPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred CCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 344444555555555555555555555555555555 345555555555555552 4555555555555555
No 97
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.28 E-value=3.5e-11 Score=117.93 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=73.5
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe--------------
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-------------- 395 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-------------- 395 (599)
+++++.|+++|.|. ++.||++++|++++.|.+++||++|.|+.++.|.+++|++++.|++++.|.
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~ 83 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHF 83 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccc
Confidence 56677888888884 688888888888888888889999999988888888888888888888773
Q ss_pred ------------------------ceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 396 ------------------------HVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 396 ------------------------~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+++||++|.||.+++|.+|++||.+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~ 136 (204)
T TIGR03308 84 TYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIA 136 (204)
T ss_pred ccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEEC
Confidence 45666777777666666666666666554
No 98
>PLN02472 uncharacterized protein
Probab=99.27 E-value=4.9e-11 Score=119.62 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=74.1
Q ss_pred eeecceEECCCcEECCCCEECCC---cEECCCCEECCCCEEe-----------ceEECCCCEECCCcEEeceEECCCCEE
Q 007537 323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----------DSVIGEGCTIGSNVLIEGSYIWDNVII 388 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----------~svIG~~~~Ig~~~~I~~s~I~~~v~I 388 (599)
...++++++.++.|..+++|.++ +.||.+|.|+++|+|+ +++||++|.||++|.|++|+|++++.|
T Consensus 73 ~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~I 152 (246)
T PLN02472 73 VLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECII 152 (246)
T ss_pred EEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEE
Confidence 44557888888888888887654 7889999999999883 589999999999999999999999999
Q ss_pred CCCcEE-eceEECCCCEECCCCEECCCCEECCC
Q 007537 389 EDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 389 g~~~~I-~~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
|.+|+| .+++|+++++|++++.|.+|..|..+
T Consensus 153 G~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g 185 (246)
T PLN02472 153 GQHSILMEGSLVETHSILEAGSVLPPGRRIPTG 185 (246)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEeCCC
Confidence 999875 24555555555555444444444433
No 99
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.27 E-value=3.5e-11 Score=112.68 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=77.3
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEEC
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRHVIVC 400 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~siI~ 400 (599)
++++++|+++++|.+++.||.+|.|+++++|. .++||++|.|+++++|.. ++|++++.|+.+|+|.+++|+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 81 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIG 81 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEEC
Confidence 35667777788887788888888888888774 358999999999999976 589999999999999888888
Q ss_pred CCCEECCCCEECCCCEECCCCCcC
Q 007537 401 DGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 401 ~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+++.|+.++.|..+++|+.++.+.
T Consensus 82 ~~~~Ig~~~~v~~~~~ig~~~~ig 105 (153)
T cd04645 82 DNCLIGMGAIILDGAVIGKGSIVA 105 (153)
T ss_pred CCCEECCCCEEcCCCEECCCCEEC
Confidence 888888888887777777776655
No 100
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.27 E-value=2.7e-11 Score=113.26 Aligned_cols=95 Identities=25% Similarity=0.240 Sum_probs=80.8
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceEEC
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVIVC 400 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~siI~ 400 (599)
+++.++|+++|.|-+++.||+++.|+++++|+ ...||++|.|.+||+|+ .+.|+++++||.+|.|.+|.|+
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig 93 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIG 93 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEEC
Confidence 56677888888888899999999999999884 56899999999999996 3689999999999999999999
Q ss_pred CCCEECCCCEECCCCEECCCCCcC
Q 007537 401 DGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 401 ~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
++|.||.|++|-+||+||.++.+.
T Consensus 94 ~~~lIGmgA~vldga~IG~~~iVg 117 (176)
T COG0663 94 DNVLIGMGATVLDGAVIGDGSIVG 117 (176)
T ss_pred CCcEEecCceEeCCcEECCCcEEc
Confidence 999999988888888888877554
No 101
>PLN02296 carbonate dehydratase
Probab=99.27 E-value=5.4e-11 Score=120.85 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=78.2
Q ss_pred eeecceEECCCcEECCCCEECCC---cEECCCCEECCCCEEe-----------ceEECCCCEECCCcEEeceEECCCCEE
Q 007537 323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----------DSVIGEGCTIGSNVLIEGSYIWDNVII 388 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----------~svIG~~~~Ig~~~~I~~s~I~~~v~I 388 (599)
...++++++.++.|.++|+|.+. +.||++|.|+++++|. +++||++|+||.+|+|++|+|++++.|
T Consensus 66 ~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~I 145 (269)
T PLN02296 66 SVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFV 145 (269)
T ss_pred EEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEE
Confidence 34567889999999999998765 4999999999999994 689999999999999999999999999
Q ss_pred CCCcEEe-ceEECCCCEECCCCEECCCCEECCC
Q 007537 389 EDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 389 g~~~~I~-~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
|.+|+|. +++|+++++|++++.|.+++.|..+
T Consensus 146 G~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~ 178 (269)
T PLN02296 146 GMGATLLDGVVVEKHAMVAAGALVRQNTRIPSG 178 (269)
T ss_pred CCCcEECCCeEECCCCEECCCCEEecCCEeCCC
Confidence 9998863 5666666666665555555444444
No 102
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.27 E-value=8.8e-11 Score=112.59 Aligned_cols=112 Identities=23% Similarity=0.299 Sum_probs=85.2
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
+.+||||+|.|+||++ ||+|+|++|+|||+|+++.+...++++|+|+++.....+..++.. ..+.++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~--------~~~~~~ 67 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG--------LPVVVV 67 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC--------CCeEEE
Confidence 4589999999999986 999999999999999999999999999999998776666555432 123333
Q ss_pred ecC-CcCCHHHHHHHHHHhcccC--CC-EEEEcCCe--echhhHHHHHHHHHH
Q 007537 109 ESH-NIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKE 155 (599)
Q Consensus 109 ~~~-~~~~~g~alr~~~~~~~i~--~d-fllv~gD~--v~~~~l~~ll~~h~~ 155 (599)
..+ ...|.+.+++... ..+. .+ +++++||+ +....+..+++.+..
T Consensus 68 ~~~~~~~G~~~~i~~al--~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 68 INPDWEEGMSSSLAAGL--EALPADADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred eCCChhhCHHHHHHHHH--HhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 332 2357777777543 2333 34 89999999 667788888887764
No 103
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.26 E-value=9.2e-11 Score=113.04 Aligned_cols=113 Identities=17% Similarity=0.295 Sum_probs=84.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEec
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~ 110 (599)
+||||+|.|+||++ ||+|+|++|+|||+|+++.+.++++++|+|++++....+..++.. .+.+.++..
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSNITLVHN 69 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCCeEEEEC
Confidence 79999999999974 999999999999999999999999999999999876665544432 123455544
Q ss_pred CC-cCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHh
Q 007537 111 HN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (599)
Q Consensus 111 ~~-~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~ 156 (599)
.. ..|.+.+++.... .....+ |+++.||+ +....+..+++.+...
T Consensus 70 ~~~~~g~~~si~~~l~-~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 118 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLE-LPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALK 118 (188)
T ss_pred cChhcCHHHHHHHHhc-CCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhC
Confidence 33 2477777775432 122334 99999999 5667889999887654
No 104
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.26 E-value=4.1e-11 Score=120.16 Aligned_cols=97 Identities=26% Similarity=0.352 Sum_probs=61.6
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe---------ceEECCCCEECCCc
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE---------GSYIWDNVIIEDGC 392 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~---------~s~I~~~v~Ig~~~ 392 (599)
..+.+.+++++++|.++ .|..++.||.+|.|+.++.| .+++||++|+|+.++.|. +++|+++|.||.+|
T Consensus 108 ~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a 186 (269)
T TIGR00965 108 AVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARS 186 (269)
T ss_pred EECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCC
Confidence 44555666666666553 45556677777777777777 357777777777777763 36777777777777
Q ss_pred EEeceEECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 393 ~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
. |..|++||++|+|+.|++|+.+.++.+
T Consensus 187 ~-----I~~GV~IG~gavIGaGavI~~~~~I~~ 214 (269)
T TIGR00965 187 E-----IVEGVIVEEGSVISMGVFIGQSTKIYD 214 (269)
T ss_pred E-----EcCCCEECCCCEEeCCCEECCCCEEec
Confidence 6 455555555555555555555554443
No 105
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.26 E-value=2.9e-11 Score=100.40 Aligned_cols=76 Identities=28% Similarity=0.302 Sum_probs=65.4
Q ss_pred CCCCEECCCCEE-eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 349 GYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 349 g~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
++++.|++++.| .+++||++|.||++++|.+++|+++++|++++.|.+|++++++.|++++++..+++||.++.++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 444555555555 3568899999999999999999999999999999999999999999999999889999887654
No 106
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.25 E-value=7.4e-11 Score=110.38 Aligned_cols=113 Identities=21% Similarity=0.296 Sum_probs=83.5
Q ss_pred cccccCCCCccCCCCcceeeecceEECCCcEECCCCEECC---CcEECCCCEECCCCEEe-----ceEECCCCEECCCcE
Q 007537 305 WTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVL 376 (599)
Q Consensus 305 w~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~-----~svIG~~~~Ig~~~~ 376 (599)
|..|.+.+..|.. +.....+.+.++.++.|.++++|.+ ...||++|.|.+|++|+ .+.||++|+||.++.
T Consensus 9 ~~~P~i~~~a~Va--~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~ai 86 (176)
T COG0663 9 GLSPKIDPTAFVA--PSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAV 86 (176)
T ss_pred CCCCCCCCceEEC--CCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccE
Confidence 4455555554443 2345567788888899999988865 47899999999999994 589999999999999
Q ss_pred EeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 377 IEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 377 I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
|++|+|++++.||-|++| -+||+||++|.|+.|++|..+-.++
T Consensus 87 vHGc~Ig~~~lIGmgA~v-----ldga~IG~~~iVgAgalV~~~k~~p 129 (176)
T COG0663 87 VHGCTIGDNVLIGMGATV-----LDGAVIGDGSIVGAGALVTPGKEIP 129 (176)
T ss_pred EEEeEECCCcEEecCceE-----eCCcEECCCcEEccCCcccCCcCCC
Confidence 999999999999999884 4444455555555555554444333
No 107
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=1e-10 Score=110.86 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=71.3
Q ss_pred eecceEECCCcEECCCCEEC---CCcEECCCCEECCCCEEec-----------eEECCCCEECCCcEEeceEECCCCEEC
Q 007537 324 ERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKISD-----------SVIGEGCTIGSNVLIEGSYIWDNVIIE 389 (599)
Q Consensus 324 ~~~~~~~~~~~~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~~-----------svIG~~~~Ig~~~~I~~s~I~~~v~Ig 389 (599)
..+++++++++.|++++.|. +.+.||++|.|++++.|.+ +.||++|.|+.++.|.++.|+++++||
T Consensus 14 i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig 93 (164)
T cd04646 14 IRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFE 93 (164)
T ss_pred EcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEe
Confidence 45788999999999999995 5689999999999999964 468888888888999889999999999
Q ss_pred CCcEEe-ceEECCCCEECCCCEECCCCEE
Q 007537 390 DGCELR-HVIVCDGVIMKAGAVLKPGVVL 417 (599)
Q Consensus 390 ~~~~I~-~siI~~~~~Ig~~~~I~~g~vi 417 (599)
.+|+|. ++.|+++++||+++.|.++..|
T Consensus 94 ~~a~I~~gv~Ig~~~~IgagsvV~~~~~i 122 (164)
T cd04646 94 SKSFVGKNVIITDGCIIGAGCKLPSSEIL 122 (164)
T ss_pred CCCEECCCCEECCCCEEeCCeEECCCcEE
Confidence 888852 4445555544444444444333
No 108
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.24 E-value=9.1e-11 Score=124.34 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=40.2
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEe--------------------ceEECCCCEECC
Q 007537 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSYIWDNVIIED 390 (599)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~--------------------~s~I~~~v~Ig~ 390 (599)
.++.|.+++.|++++.||++|.|+++++|. ++.||++|+|+++++|. +++|+++|.||.
T Consensus 135 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa 214 (343)
T PRK00892 135 DGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGA 214 (343)
T ss_pred CCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECC
Confidence 333333333333344444444444444442 33455555555555552 345555555555
Q ss_pred CcEEe-----ceEECCCCEECCCCEECCCCEECCC
Q 007537 391 GCELR-----HVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 391 ~~~I~-----~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
+++|. +++||++++|+.++.|+.+|+||.+
T Consensus 215 ~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~ 249 (343)
T PRK00892 215 NTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRH 249 (343)
T ss_pred CcEEecCccccceeCCCCEEeCCeEEccCCEECCC
Confidence 55552 2444444444444444444444444
No 109
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.23 E-value=1e-10 Score=101.66 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=76.7
Q ss_pred ecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCC
Q 007537 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGV 403 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~ 403 (599)
.+++++++++.|++++.+.++++||+++.|++++.|. +++||++|.||. .|.+|+||++++|++++.|.+++|++++
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v 86 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWC 86 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCC
Confidence 4578999999999999999999999999999999995 799999999975 6899999999999999998888888888
Q ss_pred EECCCCEEC
Q 007537 404 IMKAGAVLK 412 (599)
Q Consensus 404 ~Ig~~~~I~ 412 (599)
.||+++.+.
T Consensus 87 ~ig~~~~~~ 95 (101)
T cd05635 87 NLGAGTNNS 95 (101)
T ss_pred EECCCceec
Confidence 888776654
No 110
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.23 E-value=7.2e-11 Score=123.74 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=76.3
Q ss_pred ceeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEe---------------------
Q 007537 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------- 378 (599)
Q Consensus 321 ~~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~--------------------- 378 (599)
+.....+++++.++.|+++++|++++.||++|.|+++++|. +++||++|.|+++|+|.
T Consensus 115 ~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G 194 (324)
T TIGR01853 115 NVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIG 194 (324)
T ss_pred CcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccc
Confidence 34445566677777777777777778888888888888884 88888888888888883
Q ss_pred ceEECCCCEECCCcEEe-----ceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 379 GSYIWDNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 379 ~s~I~~~v~Ig~~~~I~-----~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+++|+++|.||.+++|. +++|++++.|+..+.|+.+|.||.++.+.
T Consensus 195 ~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~ 245 (324)
T TIGR01853 195 RVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIV 245 (324)
T ss_pred eEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEEC
Confidence 37888888888888873 46667777666666666666666665443
No 111
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=118.34 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=53.3
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe-------------ceEECCCCEE
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-------------GSYIWDNVII 388 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~-------------~s~I~~~v~I 388 (599)
+..++..++.++.|++.|.|++++.||++|.|+++++| +++.||++|.|++++.|. ...|+++++|
T Consensus 7 ~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I 86 (255)
T PRK12461 7 VIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVI 86 (255)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEE
Confidence 34455666777777777777777777777777777777 477888888888888774 3567777777
Q ss_pred CCCcEEe
Q 007537 389 EDGCELR 395 (599)
Q Consensus 389 g~~~~I~ 395 (599)
+++|+|.
T Consensus 87 ~e~vtI~ 93 (255)
T PRK12461 87 REGVTIH 93 (255)
T ss_pred CCccEEe
Confidence 7777774
No 112
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.22 E-value=1.6e-10 Score=106.42 Aligned_cols=95 Identities=31% Similarity=0.429 Sum_probs=58.4
Q ss_pred ecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEec---------eEECCCCEECCCcEE
Q 007537 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCEL 394 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I 394 (599)
..++++++++.|.+.+.|..++.||++|.|++++.| .+++||++|.|+.++.|.+ ++|+++++|+.+++
T Consensus 11 ~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~- 89 (139)
T cd03350 11 RDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCE- 89 (139)
T ss_pred CCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCE-
Confidence 345566666666666666666677777777777777 4677777777777777743 55666666666655
Q ss_pred eceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 395 RHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 395 ~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
|..+++|++++.|+++++|..+.++.
T Consensus 90 ----I~~gv~Ig~~~~Ig~g~~V~~~~~I~ 115 (139)
T cd03350 90 ----VVEGVIVGKGAVLAAGVVLTQSTPIY 115 (139)
T ss_pred ----ECCCCEECCCCEEcCCCEEcCCeEec
Confidence 44444444444444455444444443
No 113
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.22 E-value=8.2e-11 Score=117.42 Aligned_cols=99 Identities=26% Similarity=0.367 Sum_probs=80.8
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEec---------eEECCCCEECCCc
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGC 392 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~ 392 (599)
...++++++.++.|++++.|++++.||++|.|++++.| ++++||++|+||.+++|.+ +.|+++++||.++
T Consensus 94 ~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gs 173 (231)
T TIGR03532 94 IIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANA 173 (231)
T ss_pred EEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCC
Confidence 44568899999999999999999999999999999999 5999999999999999964 7888888888888
Q ss_pred EE-eceEECCCCEECCCCEE----CCCCEECCCC
Q 007537 393 EL-RHVIVCDGVIMKAGAVL----KPGVVLSFKP 421 (599)
Q Consensus 393 ~I-~~siI~~~~~Ig~~~~I----~~g~vig~~~ 421 (599)
+| .+++|+++++|+++++| ++++++..+|
T Consensus 174 vI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~P 207 (231)
T TIGR03532 174 VILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVP 207 (231)
T ss_pred EEcCCCEECCCCEECCCCEEccccCCCcEEEecC
Confidence 76 36666666666666654 4455555555
No 114
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=1.6e-10 Score=109.25 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=70.0
Q ss_pred ecceEECCCcEECCCCEECCC---cEECCCCEECCCCEEec-------------eEECCCCEECCCcEEeceEECCCCEE
Q 007537 325 RRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-------------SVIGEGCTIGSNVLIEGSYIWDNVII 388 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-------------svIG~~~~Ig~~~~I~~s~I~~~v~I 388 (599)
.++++++.++.|+++|.|.++ +.||++|.|+++++|.. ++||++|.|+++++|.++.|+++++|
T Consensus 19 ~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~I 98 (161)
T cd03359 19 SQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHI 98 (161)
T ss_pred CCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEE
Confidence 346788888888888888664 58888888888888853 47888888888888888888888888
Q ss_pred CCCcEEe-ceEECCCCEECCCCEECCCCEECCC
Q 007537 389 EDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 389 g~~~~I~-~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
+++|.|. +++|++++.|+++++|.++++|+.+
T Consensus 99 g~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~ 131 (161)
T cd03359 99 GKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPY 131 (161)
T ss_pred CCCCEEcCCCEECCCcEECCCCEECCCCEeCCC
Confidence 8887763 4556666655555555555555444
No 115
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.22 E-value=9.4e-11 Score=124.26 Aligned_cols=103 Identities=25% Similarity=0.348 Sum_probs=83.3
Q ss_pred eeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEE-eceEECCCCEECCCcEEe----
Q 007537 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR---- 395 (599)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~---- 395 (599)
....+.++++.++.|+++++|++++.||++|+|++++.| .++.||++|.|+++|+| .++.|+++++|+++|+|.
T Consensus 107 a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f 186 (343)
T PRK00892 107 AVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGF 186 (343)
T ss_pred cEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCc
Confidence 445566778888888888888888889999999999988 57889999999999999 567799999999999994
Q ss_pred ----------------ceEECCCCEECCCCEECC----CCEECCCCCcC
Q 007537 396 ----------------HVIVCDGVIMKAGAVLKP----GVVLSFKPTVH 424 (599)
Q Consensus 396 ----------------~siI~~~~~Ig~~~~I~~----g~vig~~~~~~ 424 (599)
+++|++++.||++++|.. +++||.++.++
T Consensus 187 ~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~ 235 (343)
T PRK00892 187 GFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKID 235 (343)
T ss_pred CcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEe
Confidence 478999999998887743 46666665554
No 116
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.21 E-value=1e-09 Score=110.43 Aligned_cols=228 Identities=13% Similarity=0.132 Sum_probs=131.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEec
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~ 110 (599)
+||+|+|.|+||. +|+|+||+|+|||.|+++.+..+++++|+|++.. +.+.+++... ++++.....
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~~------g~~~v~~~~ 67 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQKF------GIEVCMTSK 67 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHHc------CCEEEEeCC
Confidence 7999999999994 7999999999999999999999999999988753 5577766541 233221112
Q ss_pred CCcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeec-CCCCCccCcccCCC
Q 007537 111 HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKS-KPSPITHQSRLGTD 186 (599)
Q Consensus 111 ~~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~-~~~~~~~~~r~g~~ 186 (599)
....|+......+.....-..+ ++++.||. +....+..+++.+++. .+.++.+..+. .+. ..+.++
T Consensus 68 ~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~-----~~~~a~~~~~~~d~~-----~~~~p~ 137 (238)
T TIGR00466 68 HHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK-----NVPMAALAVKIHDAE-----EAFNPN 137 (238)
T ss_pred CCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-----CCCEEEEeeecCCHH-----HccCCC
Confidence 2233444333322211111335 67789999 7777899999987542 13333333332 211 112122
Q ss_pred ceEEEEeCCCCeEEEeeccCCC-CCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccc--hhhHHH-hhh
Q 007537 187 ELFMAIDPNTKQLLYYEDKADH-SKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD--YQHLRR-HFV 262 (599)
Q Consensus 187 ~~vv~~d~~~~rvl~~~ekp~~-~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd--~q~ir~-dfv 262 (599)
..-++.| .+|+.++|...+-+ ....+. ....|.. ..-+...|||-++.++|..|..-.. ++.++. +-+
T Consensus 138 ~vk~v~~-~~g~alyfsr~~ip~~R~~~~-----~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leql 209 (238)
T TIGR00466 138 AVKVVLD-SQGYALYFSRSLIPFDRDFFA-----KRQTPVG--DNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQL 209 (238)
T ss_pred ceEEEeC-CCCeEEEecCCCCCCCCCccc-----ccccccc--cceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHH
Confidence 2223335 36788888665321 111100 0111221 0123468999999999998764211 111110 111
Q ss_pred hccccccccCCeeEEEeccccceeeccChhHH
Q 007537 263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSY 294 (599)
Q Consensus 263 ~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY 294 (599)
.-..+|.+|++.......-..|+|++++
T Consensus 210 ----r~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 210 ----RVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ----hhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1123688999888753213488888764
No 117
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.20 E-value=2e-10 Score=105.79 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=27.9
Q ss_pred EECCCCEECCCcEE-eceEECCCCEECCCcEEe---------ceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 364 VIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR---------HVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 364 vIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~---------~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
.||++|.|+.++.| .++.|++++.|+.+|.|. .++|++++.|+++++|.++++|+.+..+.
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig 103 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLA 103 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEc
Confidence 33444444444444 234444444444444442 24555555555555555555555554443
No 118
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.19 E-value=1.1e-10 Score=118.98 Aligned_cols=101 Identities=21% Similarity=0.150 Sum_probs=76.4
Q ss_pred cceeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEec-------
Q 007537 320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG------- 379 (599)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~~------- 379 (599)
++....++++++.++.|.+++.|.+++.||++|.|++++.|+ .++||++|.|+++|+|+.
T Consensus 25 p~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~ 104 (262)
T PRK05289 25 PFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGG 104 (262)
T ss_pred CCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCC
Confidence 355566778888888888888888889999999999999995 488999999999999964
Q ss_pred -eEECCCCEECCCcEEe-ceEECCCCEECCCCEECCCCEECCC
Q 007537 380 -SYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 380 -s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
+.||+++.|+.++.|. +|+||++++|+.++.+..+++||.+
T Consensus 105 ~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~ 147 (262)
T PRK05289 105 VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDY 147 (262)
T ss_pred eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCc
Confidence 4688888888888775 5667776666655544444444433
No 119
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.19 E-value=1.5e-10 Score=95.39 Aligned_cols=77 Identities=27% Similarity=0.397 Sum_probs=65.0
Q ss_pred EECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCC
Q 007537 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAG 408 (599)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~ 408 (599)
|+++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|+++++|.++.|++++.|++++.| +.+++|+++
T Consensus 1 ~ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i-----~~~~~v~~~ 74 (79)
T cd05787 1 VIGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTI-----PPGSLISFG 74 (79)
T ss_pred CccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEE-----CCCCEEeCC
Confidence 467889999999995 79999999999999999999999999999999999999999999988774 344444444
Q ss_pred CEE
Q 007537 409 AVL 411 (599)
Q Consensus 409 ~~I 411 (599)
++|
T Consensus 75 ~~i 77 (79)
T cd05787 75 VVI 77 (79)
T ss_pred cEe
Confidence 444
No 120
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.19 E-value=1.5e-10 Score=116.12 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=43.5
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCCCEECCCcEE---------eceEECC
Q 007537 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCEL---------RHVIVCD 401 (599)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I---------~~siI~~ 401 (599)
.++++.+++.|++++.||+++.|.++.+-.++.||++|.|+.+++| .++.|++||+|+.++.| ..++|++
T Consensus 99 ~~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgD 178 (269)
T TIGR00965 99 AGFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 178 (269)
T ss_pred CCEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECC
Confidence 3444444444444555555555544311123445555555555555 34555555555555544 2244555
Q ss_pred CCEECCCCEECCCCEECCCCCc
Q 007537 402 GVIMKAGAVLKPGVVLSFKPTV 423 (599)
Q Consensus 402 ~~~Ig~~~~I~~g~vig~~~~~ 423 (599)
+|.||++|.|.+|++||.+..+
T Consensus 179 nv~IGa~a~I~~GV~IG~gavI 200 (269)
T TIGR00965 179 NCFIGARSEIVEGVIVEEGSVI 200 (269)
T ss_pred CCEECCCCEEcCCCEECCCCEE
Confidence 5555554444444444444433
No 121
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.19 E-value=2e-10 Score=106.73 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=84.4
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
|.+||+|||+|+||. ..-|||++++|+|||+|+++.|.+ .+++|++.++.|...++.|+.. | + +.++
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~--~----g--v~vi 67 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLES--V----G--VKVI 67 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHh--c----C--ceEE
Confidence 568999999999999 247999999999999999999999 7999999999999999999986 2 2 4455
Q ss_pred ecCCcCCHHHHHHHHHHhcccCCCEEEEcCCe--echhhHHHHHHHHH
Q 007537 109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHK 154 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i~~dfllv~gD~--v~~~~l~~ll~~h~ 154 (599)
..+..--..| ++.+ .+.+..+||++++|+ +.+..+..+++.+.
T Consensus 68 ~tpG~GYv~D-l~~a--l~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 ETPGEGYVED-LRFA--LESLGTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EcCCCChHHH-HHHH--HHhcCCceEEEecccccCCHHHHHHHHHHHh
Confidence 4443322333 3322 344566899999999 44456677666655
No 122
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.18 E-value=5.1e-10 Score=107.76 Aligned_cols=91 Identities=27% Similarity=0.403 Sum_probs=44.5
Q ss_pred EECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCCEE
Q 007537 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR-HVIVCDGVIM 405 (599)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~-~siI~~~~~I 405 (599)
++..++.+++++.|+++++|++++.||+++.| .+++|+++|.||++|.| .++.|..+++||++|.|. +|+|..+++|
T Consensus 92 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i 171 (197)
T cd03360 92 VVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTI 171 (197)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEE
Confidence 44444444444555444555555555555444 24445555555555544 344444444555544432 3445555555
Q ss_pred CCCCEECCCCEECC
Q 007537 406 KAGAVLKPGVVLSF 419 (599)
Q Consensus 406 g~~~~I~~g~vig~ 419 (599)
+++++|+++++|..
T Consensus 172 g~~~~v~~~~~v~~ 185 (197)
T cd03360 172 GAGAIIGAGAVVTK 185 (197)
T ss_pred CCCCEECCCCEEcC
Confidence 55555555555544
No 123
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.18 E-value=1.3e-10 Score=103.73 Aligned_cols=94 Identities=24% Similarity=0.231 Sum_probs=73.6
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCC
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAG 408 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~ 408 (599)
+++++.|++++.|++++.||++|.|++++.| .+++||++|.|++++.|.++.+ .+..+..++.+.+++|++++.|+.+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~ 79 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGAN 79 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcC
Confidence 3577888888999889999999999999999 5899999999999999987544 4444455677777777777777777
Q ss_pred CEECCCCEECCCCCcC
Q 007537 409 AVLKPGVVLSFKPTVH 424 (599)
Q Consensus 409 ~~I~~g~vig~~~~~~ 424 (599)
++|.++++|+.+..+.
T Consensus 80 ~~v~~~~~ig~~~~i~ 95 (119)
T cd03358 80 ATILPGVTIGEYALVG 95 (119)
T ss_pred CEEeCCcEECCCCEEc
Confidence 7777777777766554
No 124
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.16 E-value=5.1e-10 Score=104.78 Aligned_cols=99 Identities=23% Similarity=0.294 Sum_probs=81.5
Q ss_pred eeecceEECCCcEECCCCEECCC---cEECCCCEECCCCEEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEE
Q 007537 323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-----SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-----svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (599)
...++++++.++.|++++.|.++ ++||++|.|+++++|.. ++||++|.|+.+++|.+++|++++.|+.++.|
T Consensus 13 ~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v 92 (153)
T cd04645 13 TVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAII 92 (153)
T ss_pred EEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEE
Confidence 34467889999999999988754 69999999999999965 69999999999999999999999999999988
Q ss_pred e-ceEECCCCEECCCCEECCCCEECCCC
Q 007537 395 R-HVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 395 ~-~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
. +++|++++.|+.++.|.++..+..+.
T Consensus 93 ~~~~~ig~~~~ig~~~~v~~~~~i~~~~ 120 (153)
T cd04645 93 LDGAVIGKGSIVAAGSLVPPGKVIPPGS 120 (153)
T ss_pred cCCCEECCCCEECCCCEECCCCEeCCCC
Confidence 5 66677777776666666655555543
No 125
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.16 E-value=2.4e-10 Score=125.95 Aligned_cols=92 Identities=34% Similarity=0.451 Sum_probs=80.6
Q ss_pred cEECCCC-EECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEE
Q 007537 334 IEQSRSA-QVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411 (599)
Q Consensus 334 ~~i~~~~-~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I 411 (599)
..+++++ .|++++.||.+|.|++++.| ++++||++|.|+++|+|.+|+|+++++|+.+|+|.+++|++++.||++++|
T Consensus 256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i 335 (459)
T PRK14355 256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHL 335 (459)
T ss_pred EEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEE
Confidence 3555553 57778888888888888888 478999999999999999999999999999999999999999999999999
Q ss_pred CCCCEECCCCCcCC
Q 007537 412 KPGVVLSFKPTVHD 425 (599)
Q Consensus 412 ~~g~vig~~~~~~~ 425 (599)
.++++|+.++.+.+
T Consensus 336 ~~~~~i~~~~~ig~ 349 (459)
T PRK14355 336 RPGTELSAHVKIGN 349 (459)
T ss_pred CCCCEeCCCCEECC
Confidence 99999998887775
No 126
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.16 E-value=5.1e-10 Score=106.38 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=51.0
Q ss_pred cceEECCCcEECCCCEECC----CcEECCCCEECCCCEEe-----ceEECCCCEECCCcEEec-eEECCCCEECCCcEEe
Q 007537 326 RGMYRALEIEQSRSAQVGS----FTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELR 395 (599)
Q Consensus 326 ~~~~~~~~~~i~~~~~I~~----~~~Ig~~~~Ig~~~~I~-----~svIG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~ 395 (599)
+++.+++++.|++++.|+. ++.||++|.|++++.|. .+.||++|.|+.++.|.+ +.|++++.||.+|.|.
T Consensus 19 ~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~ 98 (167)
T cd00710 19 GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF 98 (167)
T ss_pred eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE
Confidence 3445555555555555543 24555555555555552 345566666666665543 5566666666666655
Q ss_pred ceEECCCCEECCCCEECCCCEECCCC
Q 007537 396 HVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 396 ~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
++.||+++.|+.++.|. ++.|+.+.
T Consensus 99 ~~~Ig~~~~Ig~~s~i~-~~~i~~~~ 123 (167)
T cd00710 99 NAKVGDNCVIGHNAVVD-GVEIPPGR 123 (167)
T ss_pred CCEECCCCEEcCCCEEe-CCEeCCCC
Confidence 55555555555555553 34444443
No 127
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.15 E-value=1.9e-09 Score=106.78 Aligned_cols=209 Identities=16% Similarity=0.171 Sum_probs=122.0
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCC-CcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 28 ~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~g-v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
++.|||||+|.++||. +|+|+|++|+|||+|+++.+..++ +++|+|.+. .+.+.+++... +..+.
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~------~~~~~ 66 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY------GAEVP 66 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh------CCCce
Confidence 3679999999999995 599999999999999999999987 778777653 35566665431 12122
Q ss_pred EEec----CCcCCHHHHHHHHHHh-ccc---CCCEEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCC
Q 007537 107 TIES----HNIISAGDALRLIYEQ-NVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (599)
Q Consensus 107 ~v~~----~~~~~~g~alr~~~~~-~~i---~~dfllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~ 176 (599)
++.. ....++.++++..... ... .+.|+++.||. +....+..+++.|+... +..++.+.+....+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~-----~~~~~~~~~~~~~~ 141 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEG-----ADSVFSVTEFHRFP 141 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCC-----CCEEEEEEecCcCc
Confidence 2221 2223556666654321 100 12389999999 78889999999987642 33334444433221
Q ss_pred CccCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhh
Q 007537 177 ITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQH 256 (599)
Q Consensus 177 ~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ 256 (599)
.++ . ..+.+...++.+.+....... ..+. --....++|+++.+.+.-.
T Consensus 142 -----~~~----~-~~~~~~~~~~~~~~~~~~~~q----------~~~~----~~~~n~~~y~~~~~~~~~~-------- 189 (223)
T cd02513 142 -----WRA----L-GLDDNGLEPVNYPEDKRTRRQ----------DLPP----AYHENGAIYIAKREALLES-------- 189 (223)
T ss_pred -----HHh----e-eeccCCceeccCcccccCCcC----------CChh----HeeECCEEEEEEHHHHHhc--------
Confidence 111 1 111111122222111000000 0011 1124567888887643110
Q ss_pred HHHhhhhccccccccCCeeEEEeccccceeeccChhHHHHHH
Q 007537 257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS 298 (599)
Q Consensus 257 ir~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as 298 (599)
....|.+++.+++++....+|+++.++..+.
T Consensus 190 -----------~~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae 220 (223)
T cd02513 190 -----------NSFFGGKTGPYEMPRERSIDIDTEEDFELAE 220 (223)
T ss_pred -----------CCccCCCeEEEEeCccceeCCCCHHHHHHHH
Confidence 0114788888888766789999999987664
No 128
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.15 E-value=2.4e-09 Score=105.86 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=81.0
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHC-CCcEEEEEccCch-HHHHHHHHhcccCCCCCceEEEE
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHS-KQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~-gv~eV~vv~~~~~-~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
|||||+|.|+||+. ..||+|+|++|+|||+|+++.+..+ ++++|+|++++.. +.+..++... ..+.++
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-------~~~~~~ 71 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-------AVPKIV 71 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-------CcEEEe
Confidence 79999999999974 4699999999999999999999998 7999999998753 5555555421 123333
Q ss_pred ecCCcCCHHHHHHHHHHhccc-CCC-EEEEcCCe--echhhHHHHHHHHHH
Q 007537 109 ESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKE 155 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i-~~d-fllv~gD~--v~~~~l~~ll~~h~~ 155 (599)
.... +...+++... ..+ ..+ ++++.||. +....+..+++.+++
T Consensus 72 ~~~~--~~~~sl~~~l--~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~ 118 (217)
T TIGR00453 72 AGGD--TRQDSVRNGL--KALKDAEWVLVHDAARPFVPKELLDRLLEALRK 118 (217)
T ss_pred CCCc--hHHHHHHHHH--HhCCCCCEEEEccCccCCCCHHHHHHHHHHHhh
Confidence 3222 2345555432 223 345 78999998 777789999998765
No 129
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.14 E-value=4.8e-10 Score=106.60 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=80.8
Q ss_pred EECCCcEECCCCEECCCcEECCCCEECCCCEEe-----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEec-e
Q 007537 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRH-V 397 (599)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~svIG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~-s 397 (599)
.+++++.|++++.|.+++.||++|.|++++.|. ++.||++|.|++++.|. .++|++++.|+.+|.|.+ +
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~ 83 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA 83 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCE
Confidence 477888889999998899999999999999885 37999999999999994 688999999999999985 9
Q ss_pred EECCCCEECCCCEECCCCEECCCCCcC
Q 007537 398 IVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 398 iI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+|+++|.||.++.|. +++||.++.+.
T Consensus 84 ~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig 109 (167)
T cd00710 84 YIGDNCFIGFRSVVF-NAKVGDNCVIG 109 (167)
T ss_pred EECCCCEECCCCEEE-CCEECCCCEEc
Confidence 999999999998775 56666665544
No 130
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.14 E-value=1.3e-09 Score=105.82 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=18.9
Q ss_pred EECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcE
Q 007537 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVL 376 (599)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~ 376 (599)
+++.++.|++++.|+++++|++++.||+++.| .+++|+.+|.||++++
T Consensus 95 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ 143 (201)
T TIGR03570 95 IVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVH 143 (201)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCE
Confidence 33333444444444444444444444444433 2333333333333333
No 131
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.14 E-value=6.5e-10 Score=107.02 Aligned_cols=84 Identities=26% Similarity=0.312 Sum_probs=36.3
Q ss_pred eEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCCE
Q 007537 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR-HVIVCDGVI 404 (599)
Q Consensus 328 ~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~-~siI~~~~~ 404 (599)
..++.++.|.+++.|++++.||++|.|++++.| .+++||++|.|+.++.| .++.|+++++|+.+|.|. +++|+++++
T Consensus 97 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~ 176 (197)
T cd03360 97 AVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAI 176 (197)
T ss_pred CEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCE
Confidence 334444444444444444444444444444444 23444444444444444 234444444444444443 244444444
Q ss_pred ECCCCEE
Q 007537 405 MKAGAVL 411 (599)
Q Consensus 405 Ig~~~~I 411 (599)
|+++++|
T Consensus 177 v~~~~~v 183 (197)
T cd03360 177 IGAGAVV 183 (197)
T ss_pred ECCCCEE
Confidence 4444443
No 132
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.13 E-value=3.1e-10 Score=114.92 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=59.5
Q ss_pred cceEECCCcEECCCCEEC-----CCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEec---------eEECCCCEECC
Q 007537 326 RGMYRALEIEQSRSAQVG-----SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIED 390 (599)
Q Consensus 326 ~~~~~~~~~~i~~~~~I~-----~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~ 390 (599)
++++++.++.|++++.|. .++.||++|.|+.++.|+ +++||++|+|+.++.|.+ ++|+++|.||.
T Consensus 108 p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa 187 (272)
T PRK11830 108 PGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGA 187 (272)
T ss_pred CCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECC
Confidence 445555555565555554 355666666666666664 457777777777777643 67777777777
Q ss_pred CcEE-eceEECCCCEECCCCEECCCCEECCC
Q 007537 391 GCEL-RHVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 391 ~~~I-~~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
+|+| .+++||++++|++++.|.+++.|+..
T Consensus 188 ~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~ 218 (272)
T PRK11830 188 RSEVVEGVIVEEGSVLGMGVFLGQSTKIYDR 218 (272)
T ss_pred CCEEcCCCEECCCCEEcCCCEEcCCeEECcC
Confidence 7775 35555555555555555555555543
No 133
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.13 E-value=5.5e-10 Score=105.50 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=79.4
Q ss_pred CCCcEECCCCEECC--CcEECCCCEECCCCEEe----ceEECCCCEECCCcEEec-------------eEECCCCEECCC
Q 007537 331 ALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-------------SYIWDNVIIEDG 391 (599)
Q Consensus 331 ~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~----~svIG~~~~Ig~~~~I~~-------------s~I~~~v~Ig~~ 391 (599)
..+..|++.+.|.. ++.||.++.|+++++|. ++.||++|.|+++|+|.+ +.|++++.|+++
T Consensus 5 ~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~ 84 (161)
T cd03359 5 ASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGEN 84 (161)
T ss_pred cCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCC
Confidence 34556677776633 77888888888888884 369999999999999974 479999999999
Q ss_pred cEEeceEECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 392 CELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 392 ~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
|++.+++|++++.|++++.|+++|+|+.+..+..
T Consensus 85 ~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~ 118 (161)
T cd03359 85 CVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILD 118 (161)
T ss_pred CEEEeeEEcCCcEECCCCEEcCCCEECCCcEECC
Confidence 9999999999999999999999999999887664
No 134
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.13 E-value=8.8e-10 Score=107.22 Aligned_cols=92 Identities=12% Similarity=0.223 Sum_probs=68.8
Q ss_pred ecceEECCCcEECCCCEECCC---cEECCCCEECCCCEEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEec
Q 007537 325 RRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH 396 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~ 396 (599)
.++++++.++.|.++|+|.++ ++||.+|.|+++|+|+ +++||++|.||.++.|++++|++++.||.+++|
T Consensus 26 ~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V-- 103 (196)
T PRK13627 26 IGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVI-- 103 (196)
T ss_pred ECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCcc--
Confidence 456677777777777777543 4788888888888884 589999999999999999999999999999875
Q ss_pred eEECCCCEECCCCEECCCCEECCCC
Q 007537 397 VIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 397 siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
.++++||+++.|++|++|-.+.
T Consensus 104 ---~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 104 ---MDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred ---CCCcEECCCCEEcCCCEEeCCc
Confidence 3444455555555555554443
No 135
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.12 E-value=4.2e-10 Score=109.47 Aligned_cols=76 Identities=24% Similarity=0.344 Sum_probs=39.8
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCc
Q 007537 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTV 423 (599)
Q Consensus 347 ~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~ 423 (599)
.||++|.|++++.|.+++||++|.||++++|. ++.|++++.|++++.+.+++|++++.|+..+.|+ +|+||.++.+
T Consensus 52 ~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~-~~~Ig~~~~i 128 (193)
T cd03353 52 TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLG-DAEIGEGVNI 128 (193)
T ss_pred EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCEecccceec-ccEECCCCEE
Confidence 44555555555555555555555555555553 4555555555555555555555555555544443 3444444433
No 136
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.12 E-value=8.1e-10 Score=107.34 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=51.1
Q ss_pred ecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEE
Q 007537 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL 394 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I 394 (599)
..++.++.++.|++++.|++++.||++|.|++++.|+ ++.||++|.|+.++.|. ++.|+++++|+.+|+|
T Consensus 97 ~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v 168 (201)
T TIGR03570 97 SPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATI 168 (201)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEE
Confidence 3556677777777777777777777777777777773 67777777777777774 6777777777766654
No 137
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=1.4e-10 Score=120.95 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=79.1
Q ss_pred CCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCC
Q 007537 337 SRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV 415 (599)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~ 415 (599)
+.+..|...+.||.+|+|.+++.| ++++||++|+||++|+|.+|.|++|+.|...|+|.+|.|++++.||+.++|.||+
T Consensus 260 P~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~ 339 (460)
T COG1207 260 PATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGA 339 (460)
T ss_pred CCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcC
Confidence 455678888899999999999988 7899999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCcCC
Q 007537 416 VLSFKPTVHD 425 (599)
Q Consensus 416 vig~~~~~~~ 425 (599)
+|+.++.+..
T Consensus 340 ~L~~~~hIGN 349 (460)
T COG1207 340 VLGADVHIGN 349 (460)
T ss_pred cccCCCeEee
Confidence 9999887765
No 138
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.8e-10 Score=118.25 Aligned_cols=85 Identities=22% Similarity=0.339 Sum_probs=74.2
Q ss_pred ceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEEC
Q 007537 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMK 406 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig 406 (599)
...+++++.|+..+.| ..++||.+|.||++++|.+|+|.+|++||+||.|+||+|++++.||++|.+++|+||.+=+|.
T Consensus 334 d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVe 412 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVE 412 (433)
T ss_pred hhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEc
Confidence 3445566666666666 578999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCEEC
Q 007537 407 AGAVLK 412 (599)
Q Consensus 407 ~~~~I~ 412 (599)
+..+.+
T Consensus 413 ak~~~~ 418 (433)
T KOG1462|consen 413 AKGKHG 418 (433)
T ss_pred cccccc
Confidence 766655
No 139
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=5.2e-10 Score=122.87 Aligned_cols=86 Identities=14% Similarity=0.287 Sum_probs=64.0
Q ss_pred ecceEECCCcEECCCCEECC-----CcEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceE
Q 007537 325 RRGMYRALEIEQSRSAQVGS-----FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVI 398 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~-----~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~si 398 (599)
.+++++++++.|+.+|.|++ ++.||.+|+||+++.|. +++||++|.||+++.|.++.|++++.|+.++.+.+++
T Consensus 278 ~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ 357 (446)
T PRK14353 278 EPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDAT 357 (446)
T ss_pred CCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcE
Confidence 34455555555555555544 57889999999998885 8999999999999999888888888877777777777
Q ss_pred ECCCCEECCCCE
Q 007537 399 VCDGVIMKAGAV 410 (599)
Q Consensus 399 I~~~~~Ig~~~~ 410 (599)
||++|.||.+++
T Consensus 358 ig~~~~Ig~~~~ 369 (446)
T PRK14353 358 IGAGANIGAGTI 369 (446)
T ss_pred EcCCcEECCcee
Confidence 777777766543
No 140
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.10 E-value=5.4e-10 Score=113.17 Aligned_cols=99 Identities=28% Similarity=0.383 Sum_probs=48.2
Q ss_pred cceEECCCcEECCCCEECCCcEECC-----CCEECCCCEE-eceEECCCCEECCCcEE-eceEECC--------CCEECC
Q 007537 326 RGMYRALEIEQSRSAQVGSFTVIGY-----GTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWD--------NVIIED 390 (599)
Q Consensus 326 ~~~~~~~~~~i~~~~~I~~~~~Ig~-----~~~Ig~~~~I-~~svIG~~~~Ig~~~~I-~~s~I~~--------~v~Ig~ 390 (599)
.++.+.+++.++++|.|+++++|.+ ++.|++++.| .++.||++|.||++|+| .++.|+. +++|++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD 181 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 181 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence 4455555555666666655555442 3344444444 24444555555555554 2333332 244555
Q ss_pred CcEEe-ceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 391 GCELR-HVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 391 ~~~I~-~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+|.|. +|+|..+++||++|+|++|++|+.+..+.
T Consensus 182 nv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~ 216 (272)
T PRK11830 182 NCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIY 216 (272)
T ss_pred CCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEEC
Confidence 55542 44445555555555555555555554444
No 141
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.09 E-value=5.2e-10 Score=113.33 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=43.7
Q ss_pred ceeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEe
Q 007537 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE 378 (599)
Q Consensus 321 ~~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~ 378 (599)
+....+++.++.++.|++.+.|.+++.||++|.|++++.|+ ..+||++|.|+++|+|+
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 23 FAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH 93 (255)
T ss_pred CCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence 44455666777777777777777778888888888888875 46788888888888885
No 142
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.06 E-value=2e-09 Score=105.65 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=71.5
Q ss_pred eecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEe--------------------ceEE
Q 007537 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSYI 382 (599)
Q Consensus 324 ~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~--------------------~s~I 382 (599)
...++.+++++.|++++.|++++.||++|.|++++.|+ +++||++|.|+++++|. .+.|
T Consensus 16 i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~I 95 (205)
T cd03352 16 IGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVII 95 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEE
Confidence 34556677777777777777777777777777777774 48888888888888773 4678
Q ss_pred CCCCEECCCcEEe-----ceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 383 WDNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 383 ~~~v~Ig~~~~I~-----~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
++++.|+.++.+. .++|++++.|+.++.|.++|+|+.+..+.
T Consensus 96 g~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~ 142 (205)
T cd03352 96 GDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIA 142 (205)
T ss_pred CCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEEC
Confidence 8888888888774 35666666666666666666666655443
No 143
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.06 E-value=1.3e-08 Score=108.61 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCC-CcEEEEEccCchHHHHHHHHhcccCCCCCce
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~g-v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~ 104 (599)
++++.+||||+|.|+||.. ..||+|+|++|+|||+|+++.|..++ +++|+|++++....+.+.+.... . .
T Consensus 3 mm~v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~-----~-~ 73 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI-----K-F 73 (378)
T ss_pred CCcceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-----C-e
Confidence 4568999999999999953 57999999999999999999999987 79999998876444333322110 1 1
Q ss_pred EEEEecCCcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHH
Q 007537 105 VKTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (599)
Q Consensus 105 i~~v~~~~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~ 155 (599)
+.++.. ..+..++++... ..+..+ +++..||. +....+..+++.++.
T Consensus 74 v~~v~g--G~~r~~SV~~gL--~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 74 VTLVTG--GATRQESVRNAL--EALDSEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred EEEeCC--CchHHHHHHHHH--HhcCCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 333432 123445555332 234446 67778886 666678888877654
No 144
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.05 E-value=1.1e-09 Score=105.01 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=78.4
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
+.|||||+|.|+||++ ||+|+|++|+|||+|+++.+... +.+|+|+++..... +. . ..+.++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~--------~~~~~v 62 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER---YA-L--------LGVPVI 62 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h--------cCCcEe
Confidence 4689999999999985 99999999999999999999988 89999999876544 11 1 123334
Q ss_pred ecC-CcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHH
Q 007537 109 ESH-NIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEH 153 (599)
Q Consensus 109 ~~~-~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h 153 (599)
..+ ...|...+++.... .+..+ ++++.||+ +....+..+++.+
T Consensus 63 ~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 63 PDEPPGKGPLAGILAALR--AAPADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred eCCCCCCCCHHHHHHHHH--hcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 333 34566677765432 23444 89999999 5666788888766
No 145
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.04 E-value=8e-10 Score=96.58 Aligned_cols=72 Identities=21% Similarity=0.435 Sum_probs=64.7
Q ss_pred CEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 352 ~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
+.|++++.|.+|+||++|.|+ ++.|.+|+||+++.|+++|.|.+|+|++++.|++++.|. +|+|+.+..+.+
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~-~siig~~~~Ig~ 73 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR-RAIIDKNVVIPD 73 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-eEEECCCCEECC
Confidence 567788888899999999999 999999999999999999999999999999999998885 788887776654
No 146
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.04 E-value=8.7e-10 Score=121.10 Aligned_cols=97 Identities=21% Similarity=0.225 Sum_probs=77.9
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECC
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD 401 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siI~~ 401 (599)
...++++++.++.|+++|.|. ++.||++|.|++++.|.+++||++|.||++++|. +++|+++++|+++|.+.+++|++
T Consensus 275 ~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~ 353 (451)
T TIGR01173 275 ILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGK 353 (451)
T ss_pred EEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECC
Confidence 344567777788888888774 6889999999999999999999999999999995 79999999999999999899998
Q ss_pred CCEECCC-----CEECCCCEECCC
Q 007537 402 GVIMKAG-----AVLKPGVVLSFK 420 (599)
Q Consensus 402 ~~~Ig~~-----~~I~~g~vig~~ 420 (599)
++.|+.. |.|+.+|.||.+
T Consensus 354 ~~~i~~~~~i~~~~Ig~~~~ig~~ 377 (451)
T TIGR01173 354 GSKAGHLSYLGDAEIGSNVNIGAG 377 (451)
T ss_pred CcEecceeeEeeeEEcCCcEECCC
Confidence 8766665 344444444444
No 147
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.01 E-value=3.7e-09 Score=101.06 Aligned_cols=118 Identities=21% Similarity=0.329 Sum_probs=91.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCch-HHHHHHHHhcccCCCCCce
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS-KQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~-~~i~~~l~~~~w~~~~~~~ 104 (599)
...+-+||||+|.++||+ .+|.|+|+.|+||+.++++.+..+++++++|++++.. +........ ..
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------~~ 69 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------LG 69 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc--------CC
Confidence 457889999999999999 5999999999999999999999999999999999862 223333322 34
Q ss_pred EEEEecCC-cCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHh
Q 007537 105 VKTIESHN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (599)
Q Consensus 105 i~~v~~~~-~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~ 156 (599)
+.++.++. ..|.+..++....+..-.++ .+++.||+ ++..++..+++.++.+
T Consensus 70 ~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 70 VTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred eEEEeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 56666655 46888888765433221224 89999999 8889999999988775
No 148
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.01 E-value=1.1e-09 Score=120.56 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=79.9
Q ss_pred ecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCC
Q 007537 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGV 403 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siI~~~~ 403 (599)
.+++++++++.|+++|.| .+++||++|.|++++.|.+++||++|.||++++|. +++|++++.||+++.|.+++|++++
T Consensus 285 ~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~ 363 (456)
T PRK14356 285 YGASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGA 363 (456)
T ss_pred eCceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCc
Confidence 345667777777777777 46788888888888888888888888888888884 7888888888888888888888888
Q ss_pred EECCCCEECCCCEECCCCCcCC
Q 007537 404 IMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 404 ~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
.|+..+.++ +|+||.++.+..
T Consensus 364 ~i~~~~~ig-~~~ig~~~~Ig~ 384 (456)
T PRK14356 364 KANHLTYLG-DAEIGAGANIGA 384 (456)
T ss_pred Eeccccccc-CeEECCCCEECC
Confidence 888888777 577888777664
No 149
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.00 E-value=3.4e-09 Score=96.68 Aligned_cols=94 Identities=15% Similarity=0.255 Sum_probs=54.0
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEECCC----CEECCCcEEe-ceEE
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDN----VIIEDGCELR-HVIV 399 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-----~~svIG~~~~Ig~~~~I~~s~I~~~----v~Ig~~~~I~-~siI 399 (599)
+..++.|++++.|.++++|..++.||.++.| .+++||++|.||++|.|. +.+..+ +.||++|.|. +|.|
T Consensus 10 V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG~ga~I 88 (147)
T cd04649 10 VRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLGANSGI 88 (147)
T ss_pred ECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEECCCCEE
Confidence 3344444444444444444444444444443 257888888888888886 444444 5555555543 4444
Q ss_pred CCCCEECCCCEECCCCEECCCCCcCCC
Q 007537 400 CDGVIMKAGAVLKPGVVLSFKPTVHDS 426 (599)
Q Consensus 400 ~~~~~Ig~~~~I~~g~vig~~~~~~~~ 426 (599)
++.||++++|++|++|-.+..+..+
T Consensus 89 --gv~IG~~~vIGaGsvV~k~t~i~~~ 113 (147)
T cd04649 89 --GISLGDNCIVEAGLYVTAGTKVTLP 113 (147)
T ss_pred --eEEECCCCEECCCCEEeCCeEEEEc
Confidence 4666666677777777666655544
No 150
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.00 E-value=9.6e-10 Score=106.56 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=74.7
Q ss_pred eeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe-------------ceEECCCCE
Q 007537 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-------------GSYIWDNVI 387 (599)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~-------------~s~I~~~v~ 387 (599)
....+...+++++.|++-|.|++++.||++|+|+++++| +.+.||++++|.+.+.|. ...|++|++
T Consensus 10 AiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~ 89 (260)
T COG1043 10 AIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNT 89 (260)
T ss_pred eeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCe
Confidence 344556667788888888888888888888888888888 688999999999999885 257899999
Q ss_pred ECCCcEEe--------ceEECCCCEECCCCEECCCCEECCCC
Q 007537 388 IEDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 388 Ig~~~~I~--------~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
|.++++|. -+.||+++.+-.++.|..+|+||+++
T Consensus 90 IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ 131 (260)
T COG1043 90 IREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNC 131 (260)
T ss_pred EeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcE
Confidence 99988883 26677766655555555555555443
No 151
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.00 E-value=3.9e-09 Score=103.47 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=45.9
Q ss_pred ceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007537 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE 378 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~ 378 (599)
+..+++++.|+++|.|. ++.||.+|.|+.++.|.+++||++|.|++++.|.
T Consensus 19 ~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 35688888999988884 8999999999999999999999999999999995
No 152
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.99 E-value=7e-09 Score=100.87 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=49.3
Q ss_pred ceeeecceEECCCcEECCCCEE----CCCcEECCCCEECCCCEEe---ceEECCCCEECCCcEEec
Q 007537 321 TKLERRGMYRALEIEQSRSAQV----GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEG 379 (599)
Q Consensus 321 ~~~~~~~~~~~~~~~i~~~~~I----~~~~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~~ 379 (599)
+.....++.+++++.++.++.+ .+.+.||+++.|++++.|. +++||++|.||.+|.|.+
T Consensus 37 ~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 37 YIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITD 102 (192)
T ss_pred EEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEEC
Confidence 3444567888999999999888 4578999999999999984 689999999999999954
No 153
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.99 E-value=1.9e-09 Score=118.79 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=82.5
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECC
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD 401 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siI~~ 401 (599)
...+++.+++++.|+++|.| .++.||++|.|++++.|.+++||++|.||+++.|. ++.|++++.||+++.|++++|++
T Consensus 279 ~i~~~v~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~ 357 (456)
T PRK09451 279 IIEGNVTLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGK 357 (456)
T ss_pred EEecCcEECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCC
Confidence 44566788888888888888 48999999999999999999999999999999995 89999999999999999998988
Q ss_pred CCEECCCC-----EECCCCEECCCC
Q 007537 402 GVIMKAGA-----VLKPGVVLSFKP 421 (599)
Q Consensus 402 ~~~Ig~~~-----~I~~g~vig~~~ 421 (599)
++.|+..+ .|+++|.||.++
T Consensus 358 ~~~~~~~~~~g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 358 GSKAGHLTYLGDAEIGDNVNIGAGT 382 (456)
T ss_pred CCccCccccccccEECCCCEEcCCe
Confidence 88887755 455555555554
No 154
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.98 E-value=6.8e-09 Score=100.56 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=79.3
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHH---HHHHHhcccCCCCCceE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV---IDYLENSEWFSQPNFTV 105 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i---~~~l~~~~w~~~~~~~i 105 (599)
+.+||||+|.|+||+. +|.|++++|+|||+|+++.+...++.+++|+++++.+.+ ..+... ...+
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~-------~~~~ 68 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLA-------DERI 68 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhc-------CCCe
Confidence 3589999999999985 899999999999999999888889999999998764332 222111 1123
Q ss_pred EEEecC-CcCCHHHHHHHHHHhc-ccCCC-EEEEcCCe--echhhHHHHHHHHHH
Q 007537 106 KTIESH-NIISAGDALRLIYEQN-VIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (599)
Q Consensus 106 ~~v~~~-~~~~~g~alr~~~~~~-~i~~d-fllv~gD~--v~~~~l~~ll~~h~~ 155 (599)
.++..+ ...|.+.+++.....- .-..+ +++++||+ +....+..+++..+.
T Consensus 69 ~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 69 MLVCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred EEEECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 333322 2346666666543221 11234 89999999 666677888776543
No 155
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.97 E-value=6.6e-09 Score=101.97 Aligned_cols=83 Identities=36% Similarity=0.514 Sum_probs=63.3
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEE-eceEECCCCEECCCcEEe------------
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR------------ 395 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~------------ 395 (599)
+++++.|++.++|++++.||+++.|++++.| .++.||++|.|+++++| .+++|++++.|+++++|.
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ 83 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGG 83 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCc
Confidence 6677777777788777888888888888877 57888888888888888 458888888888888773
Q ss_pred --------ceEECCCCEECCCCEEC
Q 007537 396 --------HVIVCDGVIMKAGAVLK 412 (599)
Q Consensus 396 --------~siI~~~~~Ig~~~~I~ 412 (599)
.++|++++.|+.++.+.
T Consensus 84 ~~~~~~~~~v~Ig~~~~Ig~~~~i~ 108 (205)
T cd03352 84 WVKIPQLGGVIIGDDVEIGANTTID 108 (205)
T ss_pred EEEcCCcceEEECCCEEECCCCEEe
Confidence 46677777777766653
No 156
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=98.96 E-value=7.4e-09 Score=100.57 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=77.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
.++.+||||+|.|+||+ ..||+|+|++|+|||+|+++.+. .++++|+|+++.+...+. . + ++.
T Consensus 2 ~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~--~----~~~-- 64 (193)
T PRK00317 2 PPITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARYA----A--F----GLP-- 64 (193)
T ss_pred CCceEEEEcCCCcccCC----CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHHH----h--c----CCc--
Confidence 46899999999999995 36999999999999999999998 779999998876533221 1 1 122
Q ss_pred EEecCC--cCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHH
Q 007537 107 TIESHN--IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (599)
Q Consensus 107 ~v~~~~--~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~ 155 (599)
++.... ..|...+++.... ....+ ++++.||+ +....+..+++.+.+
T Consensus 65 ~v~~~~~~~~g~~~~i~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 65 VIPDSLADFPGPLAGILAGLK--QARTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred EEeCCCCCCCCCHHHHHHHHH--hcCCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 233222 2455566664432 23444 88999999 556678888886543
No 157
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=98.96 E-value=7.4e-09 Score=99.76 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=77.4
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
+.+||||+|.|+||+ ..||+|+|++|+|||+|+++.+.. ++++|+|++...... +... .+ ++ .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-~~----~~--~~i 65 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA-GF----GL--PVV 65 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-cC----CC--cEE
Confidence 468999999999997 359999999999999999999986 589998888654321 2211 11 22 223
Q ss_pred ec--CCcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHH
Q 007537 109 ES--HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (599)
Q Consensus 109 ~~--~~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~ 155 (599)
.. +...|.+.+++.... .+..+ ++++.||+ +....+..+++.++.
T Consensus 66 ~~~~~~~~g~~~si~~al~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 66 PDALADFPGPLAGILAGLR--WAGTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred ecCCCCCCCCHHHHHHHHH--hcCCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 32 334677887775532 23434 99999998 555567787776653
No 158
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.96 E-value=2e-09 Score=119.33 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=69.8
Q ss_pred eeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEEC
Q 007537 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIVC 400 (599)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siI~ 400 (599)
....+++.++.++.|+++|.| .+++||++|.|+++++|.+++||++|.||+++.| .++.|++++.|++++.|.+++|+
T Consensus 283 ~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~ 361 (481)
T PRK14358 283 VLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLD 361 (481)
T ss_pred cEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceec
Confidence 334444555556666666666 4567777777888877777888888888888888 47888888888888888888888
Q ss_pred CCCEECCCC-----EECCCCEECCCCCcC
Q 007537 401 DGVIMKAGA-----VLKPGVVLSFKPTVH 424 (599)
Q Consensus 401 ~~~~Ig~~~-----~I~~g~vig~~~~~~ 424 (599)
+++.||..+ +|+.+|.||.++.+.
T Consensus 362 ~~~~ig~~~~~~~~~ig~~~~ig~~~~i~ 390 (481)
T PRK14358 362 AGVKAGHLAYLGDVTIGAETNVGAGTIVA 390 (481)
T ss_pred CCcccCceEEECCeEEcCCceEcCCEEEe
Confidence 888877753 444444444444444
No 159
>PRK10502 putative acyl transferase; Provisional
Probab=98.96 E-value=4.7e-09 Score=101.17 Aligned_cols=92 Identities=25% Similarity=0.338 Sum_probs=59.2
Q ss_pred ceEECCCcEECCCCEECC--CcEECCCCEECCCCEEe---ceEECCCCEECCCcEEe-ce---------EECCCCEECCC
Q 007537 327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIE-GS---------YIWDNVIIEDG 391 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~-~s---------~I~~~v~Ig~~ 391 (599)
...+++++.|.+++.|.. ++.||++|.|++++.|. .++||++|.|++++.|. ++ .+...++||++
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~ 130 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEG 130 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCC
Confidence 456788888888888754 58899999999999884 67999999999999883 21 11223344444
Q ss_pred cEEe-ceEECCCCEECCCCEECCCCEEC
Q 007537 392 CELR-HVIVCDGVIMKAGAVLKPGVVLS 418 (599)
Q Consensus 392 ~~I~-~siI~~~~~Ig~~~~I~~g~vig 418 (599)
|.|. +|+|..+++||+++.|++++++.
T Consensus 131 ~~Ig~~a~I~~Gv~Ig~~~vIga~svV~ 158 (182)
T PRK10502 131 CWLAADVFVAPGVTIGSGAVVGARSSVF 158 (182)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEEe
Confidence 4431 23344444444444444444443
No 160
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=98.96 E-value=8.6e-09 Score=101.82 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=82.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCC-CcEEEEEccCchHHHHHHHHhcccCCCCCceEEEE
Q 007537 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (599)
Q Consensus 30 ~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~g-v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v 108 (599)
.+||||+|.|+||++ ..||+|+|++|+|||+|+++.+..++ +++|+|++++........+.. +.. ...+.++
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~--~~~--~~~~~~~ 74 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK--YGL--SKVVKIV 74 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh--ccc--CCCeEEE
Confidence 589999999999985 37999999999999999999999986 899999998765444443321 110 1124444
Q ss_pred ecCCcCCHHHHHHHHHHhccc---CCC-EEEEcCCe--echhhHHHHHHHHHHh
Q 007537 109 ESHNIISAGDALRLIYEQNVI---HGD-FVLISGDT--VSNMLLTQALQEHKER 156 (599)
Q Consensus 109 ~~~~~~~~g~alr~~~~~~~i---~~d-fllv~gD~--v~~~~l~~ll~~h~~~ 156 (599)
... .+.+.+++.... .+ ..+ ++++.||+ +....+..+++.++..
T Consensus 75 ~~~--~~~~~si~~al~--~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (218)
T cd02516 75 EGG--ATRQDSVLNGLK--ALPDADPDIVLIHDAARPFVSPELIDRLIDALKEY 124 (218)
T ss_pred CCc--hHHHHHHHHHHH--hcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhC
Confidence 332 234556664432 33 334 77888998 7777899999988653
No 161
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.94 E-value=8e-09 Score=97.66 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=44.7
Q ss_pred eEECCCcEECCCCEECCCcEECCC--CEECCCCEEeceEECCCCEECCCcEEec---------eEECCCCEECCCcEEec
Q 007537 328 MYRALEIEQSRSAQVGSFTVIGYG--TKIGSNSKISDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCELRH 396 (599)
Q Consensus 328 ~~~~~~~~i~~~~~I~~~~~Ig~~--~~Ig~~~~I~~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I~~ 396 (599)
+++..++.|++++.|+++++|+.+ +.|+++ ++||++|.|+++|+|.+ ++|+++|+|+.+|+|
T Consensus 56 ~~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~-----~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I-- 128 (162)
T TIGR01172 56 IRVLTGVDIHPGARIGRGVFIDHGTGVVIGET-----AVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKV-- 128 (162)
T ss_pred HheeeCeEeCCCCEECCCeEECCCCeEEECCC-----CEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEE--
Confidence 344455666666666666666543 444444 45556666666655542 466666666666664
Q ss_pred eEECCCCEECCCCEECCCCEECC
Q 007537 397 VIVCDGVIMKAGAVLKPGVVLSF 419 (599)
Q Consensus 397 siI~~~~~Ig~~~~I~~g~vig~ 419 (599)
..+++||+++.|+++++|..
T Consensus 129 ---~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 129 ---LGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred ---ECCcEECCCCEECCCCEECC
Confidence 33444444444444444443
No 162
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=98.94 E-value=1.2e-08 Score=101.80 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=82.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCC-CcEEEEEccCch-HHHHHHHHhcccCCCCCce
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS-KQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~g-v~eV~vv~~~~~-~~i~~~l~~~~w~~~~~~~ 104 (599)
+.+.|||||+|.|+||+. ..||+|+|++|+|||+|+++.+..++ +++|+|+++... ..+..++.. .. ..
T Consensus 2 ~~~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~-----~~ 72 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA-KD-----PK 72 (227)
T ss_pred CceEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc-cC-----Cc
Confidence 467899999999999962 46999999999999999999999875 899999998654 444333321 10 12
Q ss_pred EEEEecCCcCCHHHHHHHHHHhccc-CCC-EEEEcCCe--echhhHHHHHHHHHHh
Q 007537 105 VKTIESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKER 156 (599)
Q Consensus 105 i~~v~~~~~~~~g~alr~~~~~~~i-~~d-fllv~gD~--v~~~~l~~ll~~h~~~ 156 (599)
+..+.. ..+.+++++... ..+ ..+ ++++.||. +....+..+++.++..
T Consensus 73 ~~~~~~--~~~~~~sv~~~l--~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (227)
T PRK00155 73 VTVVAG--GAERQDSVLNGL--QALPDDDWVLVHDAARPFLTPDDIDRLIEAAEET 124 (227)
T ss_pred eEEeCC--cchHHHHHHHHH--HhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 333332 123566666543 233 334 67788998 7777899999988653
No 163
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.94 E-value=3.9e-09 Score=113.53 Aligned_cols=79 Identities=29% Similarity=0.447 Sum_probs=65.2
Q ss_pred CcEECCCCEECC---CcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-----eEECCCCE
Q 007537 333 EIEQSRSAQVGS---FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-----VIVCDGVI 404 (599)
Q Consensus 333 ~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-----siI~~~~~ 404 (599)
++.|+++|.|++ +++||++|.|+++|.|.+|+|+++|.||++++|.+|+|++++.|+.+|+|.+ .+||+++.
T Consensus 293 ~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~ 372 (380)
T PRK05293 293 NSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEV 372 (380)
T ss_pred cCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCC
Confidence 445667776653 6899999999999999999999999999999999999999999999999865 55655555
Q ss_pred ECCCCEE
Q 007537 405 MKAGAVL 411 (599)
Q Consensus 405 Ig~~~~I 411 (599)
|+++++|
T Consensus 373 ~~~~~~~ 379 (380)
T PRK05293 373 IGVGTVI 379 (380)
T ss_pred CCCCcEe
Confidence 5555444
No 164
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.93 E-value=9.4e-09 Score=93.85 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=45.9
Q ss_pred ceEECCCcEECCCCEECCCcEECCCCEEC----CCCEE-eceEECCCCEECCCcEE-ec----eEECCCCEECCCcEEec
Q 007537 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIG----SNSKI-SDSVIGEGCTIGSNVLI-EG----SYIWDNVIIEDGCELRH 396 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig----~~~~I-~~svIG~~~~Ig~~~~I-~~----s~I~~~v~Ig~~~~I~~ 396 (599)
..++++++.|.+++.|..++.||.+|.|. .++.| .++.||++|.|. +.+ .+ +.|+++++||.+|.| +
T Consensus 13 ~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~IG~~~~IG~ga~I-g 89 (147)
T cd04649 13 GAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVISIGKRCLLGANSGI-G 89 (147)
T ss_pred CCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEEECCCCEECCCCEE-e
Confidence 34455555555555555555555555544 55555 345555555554 334 23 455555555555555 4
Q ss_pred eEECCCCEECCCCEECCCCEECC
Q 007537 397 VIVCDGVIMKAGAVLKPGVVLSF 419 (599)
Q Consensus 397 siI~~~~~Ig~~~~I~~g~vig~ 419 (599)
..||++++||++++|..++.|-.
T Consensus 90 v~IG~~~vIGaGsvV~k~t~i~~ 112 (147)
T cd04649 90 ISLGDNCIVEAGLYVTAGTKVTL 112 (147)
T ss_pred EEECCCCEECCCCEEeCCeEEEE
Confidence 55555555555555555554443
No 165
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=3.3e-09 Score=116.59 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=5.1
Q ss_pred CceEeeHHhH
Q 007537 211 GTICLDKMLL 220 (599)
Q Consensus 211 ~~~~i~~~~~ 220 (599)
|.|.|++++|
T Consensus 172 Giy~f~~~~l 181 (450)
T PRK14360 172 GIYCFNWPAL 181 (450)
T ss_pred EEEEEEHHHH
Confidence 4555555444
No 166
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=98.92 E-value=1.1e-08 Score=103.63 Aligned_cols=120 Identities=19% Similarity=0.277 Sum_probs=81.3
Q ss_pred ccCCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHC-CCcEEEEEccCc-hHHHHHHHHhcccCCCC
Q 007537 24 LARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQP 101 (599)
Q Consensus 24 ~~~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~-gv~eV~vv~~~~-~~~i~~~l~~~~w~~~~ 101 (599)
+....+.+||||||.|+||+. ..||+|++++|+|||+|+++.+... ++++|+|+++.. .+.++..+.. +
T Consensus 20 ~~~~~i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~--~---- 90 (252)
T PLN02728 20 VKEKSVSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN--I---- 90 (252)
T ss_pred cccCceEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--c----
Confidence 345568899999999999973 5799999999999999999999985 899999999875 3445555432 1
Q ss_pred CceEEEEecCCcCCHHHHHHHHHHhcccCC-CEEEEcCC--e--echhhHHHHHHHHHHh
Q 007537 102 NFTVKTIESHNIISAGDALRLIYEQNVIHG-DFVLISGD--T--VSNMLLTQALQEHKER 156 (599)
Q Consensus 102 ~~~i~~v~~~~~~~~g~alr~~~~~~~i~~-dfllv~gD--~--v~~~~l~~ll~~h~~~ 156 (599)
+..+.++.... +-.+.++... ..+.. ..+|+.+| . +....+..+++...+.
T Consensus 91 ~~~i~~v~gg~--~r~~SV~~gl--~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ 146 (252)
T PLN02728 91 DVPLKFALPGK--ERQDSVFNGL--QEVDANSELVCIHDSARPLVTSADIEKVLKDAAVH 146 (252)
T ss_pred CCceEEcCCCC--chHHHHHHHH--HhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence 12344432222 2233444332 22332 34566666 3 6666788888877664
No 167
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.91 E-value=4.7e-09 Score=114.67 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=58.4
Q ss_pred CcEECCCCEECCCCEEeceEECCCC----------EECCCcEEeceEECCCCEECCCcEEe--------ceEECCCCEEC
Q 007537 345 FTVIGYGTKIGSNSKISDSVIGEGC----------TIGSNVLIEGSYIWDNVIIEDGCELR--------HVIVCDGVIMK 406 (599)
Q Consensus 345 ~~~Ig~~~~Ig~~~~I~~svIG~~~----------~Ig~~~~I~~s~I~~~v~Ig~~~~I~--------~siI~~~~~Ig 406 (599)
++.||++|+|+++++|.+|+||++| +||+++.|.+|+|++++.||.++++. .++||++|.||
T Consensus 298 ~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig 377 (430)
T PRK14359 298 NSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIG 377 (430)
T ss_pred CCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEc
Confidence 4555555555555555555555555 77777788899999999999998874 36888888888
Q ss_pred CCCEECCCCEECCCCCcC
Q 007537 407 AGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 407 ~~~~I~~g~vig~~~~~~ 424 (599)
.++.|.+|+.||.++.+.
T Consensus 378 ~~~~i~~~~~ig~~~~i~ 395 (430)
T PRK14359 378 SDTQLVAPVNIEDNVLIA 395 (430)
T ss_pred CCCEEeCCcEECCCCEEC
Confidence 888777777777776655
No 168
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.90 E-value=1.4e-08 Score=99.04 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=55.5
Q ss_pred ECCCcEECCCCEE--CCCcEECCCCEECCCCEE---eceEECCCCEECCCcEEece-------------EECCCCEECCC
Q 007537 330 RALEIEQSRSAQV--GSFTVIGYGTKIGSNSKI---SDSVIGEGCTIGSNVLIEGS-------------YIWDNVIIEDG 391 (599)
Q Consensus 330 ~~~~~~i~~~~~I--~~~~~Ig~~~~Ig~~~~I---~~svIG~~~~Ig~~~~I~~s-------------~I~~~v~Ig~~ 391 (599)
+++++.|.+.+.+ +.++.||+++.|+.++.| .++.||++|.||++|.|... .....++||++
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~ 137 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN 137 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCC
Confidence 4555666665554 457777777777777777 35789999999999988511 11122444444
Q ss_pred cEEe-ceEECCCCEECCCCEECCCCEECCC
Q 007537 392 CELR-HVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 392 ~~I~-~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
|.|. +++|..+++||++++|++|++|...
T Consensus 138 v~IG~~~~I~~gv~IG~~~vIgagsvV~kd 167 (203)
T PRK09527 138 VWIGSHVVINPGVTIGDNSVIGAGSVVTKD 167 (203)
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEEccc
Confidence 4432 3445566666666666666666553
No 169
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.88 E-value=1.7e-08 Score=98.85 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceE
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i 105 (599)
...+.+||||||.|+||+. +|+|+|++|+|||+|+++.|... +++|+|+++. .+..+..+.. .+
T Consensus 5 ~~~~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~-~~~~~~~~~~---------~~ 68 (200)
T PRK02726 5 KNNLVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPW-PERYQSLLPP---------GC 68 (200)
T ss_pred CCCceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCC-HHHHHhhccC---------CC
Confidence 3468999999999999973 89999999999999999999864 7888888763 3333332211 23
Q ss_pred EEEecCC-cCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHH
Q 007537 106 KTIESHN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHK 154 (599)
Q Consensus 106 ~~v~~~~-~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~ 154 (599)
.++.... ..|...+++.... .+..+ ++|+.||+ +....+..+++.+.
T Consensus 69 ~~i~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 69 HWLREPPPSQGPLVAFAQGLP--QIKTEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred eEecCCCCCCChHHHHHHHHH--hCCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 3343322 2566666665432 34444 89999999 66677888888764
No 170
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=8.8e-09 Score=109.71 Aligned_cols=83 Identities=36% Similarity=0.509 Sum_probs=71.0
Q ss_pred ECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCC
Q 007537 336 QSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPG 414 (599)
Q Consensus 336 i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g 414 (599)
+.. +.|.++++||.+|.|++++.|+ +++||++|.||+++.|.+|+||++++|++++.|.+|+|+.+|+||+++.|++
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~~i~d- 330 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASLIIGD- 330 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCceeecc-
Confidence 344 7888999999999999999994 7999999999999999999999999999999999999999999997332333
Q ss_pred CEECCC
Q 007537 415 VVLSFK 420 (599)
Q Consensus 415 ~vig~~ 420 (599)
+++|.+
T Consensus 331 ~~~g~~ 336 (358)
T COG1208 331 VVIGIN 336 (358)
T ss_pred eEecCc
Confidence 444443
No 171
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.86 E-value=1.4e-08 Score=112.78 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=32.0
Q ss_pred eeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCc
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGC 392 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~ 392 (599)
...++++++.++.|+++|.|. +++||++|.|+. +.+.+++||++|.||+++.|. +++|++++.||.++
T Consensus 285 ~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~ 353 (482)
T PRK14352 285 QLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFV 353 (482)
T ss_pred EEeecCEECCCCEECCCCEEe-cCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcE
Confidence 334455666666666666552 344444444432 333444444444444444442 44444444444333
No 172
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.86 E-value=2.5e-08 Score=88.81 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=23.3
Q ss_pred CCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEE
Q 007537 373 SNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVL 411 (599)
Q Consensus 373 ~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I 411 (599)
.++.+.++.|++++.|+.++.+. +++|++++.|++++.+
T Consensus 61 ~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v 100 (119)
T cd03358 61 RKWELKGTTVKRGASIGANATILPGVTIGEYALVGAGAVV 100 (119)
T ss_pred cccccCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEE
Confidence 34557778888888888887753 2444444444444333
No 173
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.85 E-value=7.3e-09 Score=113.19 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=61.3
Q ss_pred ceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECC-------------------CCEECCCcEEeceEECCCCE
Q 007537 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE-------------------GCTIGSNVLIEGSYIWDNVI 387 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~-------------------~~~Ig~~~~I~~s~I~~~v~ 387 (599)
+.+++.++.| +++.|+ +++||.+|+||+++.|.+|+|+. +|.||++|+|.+|+|++++.
T Consensus 308 ~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 385 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNAR 385 (429)
T ss_pred eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcE
Confidence 4688999988 788884 79999999999999999999965 79999999999999999999
Q ss_pred ECCCcEEe
Q 007537 388 IEDGCELR 395 (599)
Q Consensus 388 Ig~~~~I~ 395 (599)
||++|+|.
T Consensus 386 i~~~~~~~ 393 (429)
T PRK02862 386 IGNNVRIV 393 (429)
T ss_pred ECCCcEEe
Confidence 99999985
No 174
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.85 E-value=2.8e-08 Score=100.87 Aligned_cols=91 Identities=15% Similarity=0.290 Sum_probs=44.6
Q ss_pred ECCCcEECCCCEECCCcEECCCCE-ECCCCE---E-eceEECCCCEECCCcEEeceEECCC----CEECCCcEEe-ceEE
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTK-IGSNSK---I-SDSVIGEGCTIGSNVLIEGSYIWDN----VIIEDGCELR-HVIV 399 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~-Ig~~~~---I-~~svIG~~~~Ig~~~~I~~s~I~~~----v~Ig~~~~I~-~siI 399 (599)
+..++.|++++.|.++++|+.++. +|.+++ | ..++||++|.||.+|.|. +.+..+ +.||++|.|. +|.|
T Consensus 187 Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg-~tLsGg~~~~V~IGe~~lIGagA~I 265 (341)
T TIGR03536 187 VRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTM-GTLSGGGNIVISVGEGCLLGANAGI 265 (341)
T ss_pred EcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEe-EEEeCCCceeEEECCCcEECCCCEE
Confidence 333344444444444444444444 444333 3 356778888888888773 333333 4444444442 3333
Q ss_pred CCCCEECCCCEECCCCEECCCCCc
Q 007537 400 CDGVIMKAGAVLKPGVVLSFKPTV 423 (599)
Q Consensus 400 ~~~~~Ig~~~~I~~g~vig~~~~~ 423 (599)
++.||++|+|+.|++|-.+.++
T Consensus 266 --GI~IGd~~iIGAGavVtagTkI 287 (341)
T TIGR03536 266 --GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred --eeEECCCCEECCCCEEeCCcEE
Confidence 4444555555555554444433
No 175
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.84 E-value=3.1e-08 Score=100.03 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=57.8
Q ss_pred eeecceEECCCcEECCCCEECCCc-EECCCCEECCCCEE-eceEECCCCEECCCcEEec---------eEECCCCEECCC
Q 007537 323 LERRGMYRALEIEQSRSAQVGSFT-VIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDG 391 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~~~~-~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~ 391 (599)
..|-+.|++++++|.+.++|..++ .||.. .| ++.| ..++||++|.|++++.|.+ +.|++++.||.|
T Consensus 161 rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGag 237 (319)
T TIGR03535 161 RVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGAN 237 (319)
T ss_pred eeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCC
Confidence 445677777777777777777777 57775 55 3566 4678888888888888543 567777777777
Q ss_pred cEEeceEECCCCEECCCCEECCCCEECCCC
Q 007537 392 CELRHVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 392 ~~I~~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
|.| + +.||++|+|+.|++|-.+.
T Consensus 238 A~I-G------I~IGd~~VVGAGaVVtkgT 260 (319)
T TIGR03535 238 SGL-G------ISLGDDCVVEAGLYVTAGT 260 (319)
T ss_pred CEE-C------eEECCCCEECCCCEEeCCe
Confidence 765 4 4444444444444444443
No 176
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.83 E-value=3.8e-08 Score=98.39 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=81.0
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHC-CCcEEEEEccCch-HHHHHHHHhcccCCCCCceE
Q 007537 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHS-KQVIDYLENSEWFSQPNFTV 105 (599)
Q Consensus 28 ~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~-gv~eV~vv~~~~~-~~i~~~l~~~~w~~~~~~~i 105 (599)
.+.+||||+|.|+||+. ..||+|+|++|+|||+|+++.+..+ ++++|+|+++... ..+.+++....+. ...+
T Consensus 2 ~~~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~---~~~~ 75 (230)
T PRK13385 2 NYELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA---DQRV 75 (230)
T ss_pred ceEEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC---CCce
Confidence 36789999999999972 4799999999999999999999986 5899999887643 4455555432211 0123
Q ss_pred EEEecCCcCCHHHHHHHHHHhcccC-CC-EEEEcCCe--echhhHHHHHHHHHHh
Q 007537 106 KTIESHNIISAGDALRLIYEQNVIH-GD-FVLISGDT--VSNMLLTQALQEHKER 156 (599)
Q Consensus 106 ~~v~~~~~~~~g~alr~~~~~~~i~-~d-fllv~gD~--v~~~~l~~ll~~h~~~ 156 (599)
.++.... +..++++.... .+. .+ ++++.||. +....+..+++.+++.
T Consensus 76 ~~v~~g~--~r~~sv~~gl~--~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~ 126 (230)
T PRK13385 76 EVVKGGT--ERQESVAAGLD--RIGNEDVILVHDGARPFLTQDIIDRLLEGVAKY 126 (230)
T ss_pred EEcCCCc--hHHHHHHHHHH--hccCCCeEEEccCCCCCCCHHHHHHHHHHHhhC
Confidence 4443222 22355554322 232 35 56678999 6677899999988754
No 177
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.81 E-value=1.4e-08 Score=111.74 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=36.5
Q ss_pred cceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEECC
Q 007537 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIVCD 401 (599)
Q Consensus 326 ~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siI~~ 401 (599)
+++.+++++.|+++|.|. +++||++|.|. ++.+.+|+||++|.||++++| .+++|+++++|+++|.+.+++|++
T Consensus 272 ~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~ 346 (448)
T PRK14357 272 GKTRIGEDCEIGPMTRIV-DCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGE 346 (448)
T ss_pred eeeEECCCcEECCCceec-ccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcC
Confidence 344444555555444442 24455555442 223345555666655555555 345555555555555544444433
No 178
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.81 E-value=5.6e-08 Score=103.93 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceE
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i 105 (599)
.+.+.+||||+|.|+||+ ..||+|+|++|+|||+|+++.|.. .+++|+|+++...+.+..++.. +.+
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~--------~~~ 69 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG--------LPV 69 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC--------CcE
Confidence 446899999999999995 359999999999999999999986 4899998777655555544322 222
Q ss_pred EEEecCCcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHH
Q 007537 106 KTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (599)
Q Consensus 106 ~~v~~~~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~ 155 (599)
..-......|....++.... .+..+ +++++||+ +....+..+++.++.
T Consensus 70 i~d~~~g~~G~~~si~~gl~--~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 70 YPDILPGFQGPLSGILAGLE--HADSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred EecCCCCCCChHHHHHHHHH--hcCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 11111222456566664432 34445 89999998 566677888776554
No 179
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.80 E-value=4.1e-08 Score=85.26 Aligned_cols=78 Identities=18% Similarity=0.082 Sum_probs=61.6
Q ss_pred CCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCC
Q 007537 344 SFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 344 ~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
+.++|++++.|++++.| +.++||++|.||+++.|. +++|+.++.|+. .|.+|+|.+++.|+.++.|+ +++||.++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v 86 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWC 86 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCC
Confidence 35777888888888777 568899999999999884 688888888874 57788888888888888876 77777776
Q ss_pred CcC
Q 007537 422 TVH 424 (599)
Q Consensus 422 ~~~ 424 (599)
.+.
T Consensus 87 ~ig 89 (101)
T cd05635 87 NLG 89 (101)
T ss_pred EEC
Confidence 554
No 180
>PLN02694 serine O-acetyltransferase
Probab=98.80 E-value=2.7e-08 Score=101.05 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=20.0
Q ss_pred EeceEECCCCEECCCcEE-eceEECCCCEECCCCEE
Q 007537 377 IEGSYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVL 411 (599)
Q Consensus 377 I~~s~I~~~v~Ig~~~~I-~~siI~~~~~Ig~~~~I 411 (599)
..+++|+++|.||.||+| .++.||++|+||++++|
T Consensus 210 ~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV 245 (294)
T PLN02694 210 DRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVV 245 (294)
T ss_pred CCccEECCCeEECCeeEECCCCEECCCCEECCCCEE
Confidence 345677777777777765 34444444444444443
No 181
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.79 E-value=5.4e-08 Score=97.42 Aligned_cols=109 Identities=19% Similarity=0.259 Sum_probs=79.3
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCC-CcEEEEEccCch--HHHHHHHHhcccCCCCCceEEE
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS--KQVIDYLENSEWFSQPNFTVKT 107 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~g-v~eV~vv~~~~~--~~i~~~l~~~~w~~~~~~~i~~ 107 (599)
|||||+|.++||. +|+|+|++|+|||+|+++.+..++ +++|+|+++... +.+.+++.. ..+.+
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~--------~~v~~ 67 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK--------LGVKV 67 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH--------cCCeE
Confidence 7999999999994 599999999999999999999997 899999998764 567776653 12334
Q ss_pred EecCCcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHh
Q 007537 108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (599)
Q Consensus 108 v~~~~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~ 156 (599)
+..+...+.+..+..+. ....+ ++++.||+ +....++.+++.++..
T Consensus 68 v~~~~~~~l~~~~~~~~---~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~ 116 (233)
T cd02518 68 FRGSEEDVLGRYYQAAE---EYNADVVVRITGDCPLIDPEIIDAVIRLFLKS 116 (233)
T ss_pred EECCchhHHHHHHHHHH---HcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 44443322222222111 12334 89999999 7777899999988764
No 182
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.79 E-value=4.3e-08 Score=79.97 Aligned_cols=71 Identities=31% Similarity=0.479 Sum_probs=38.7
Q ss_pred EECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEEC---CCCEECCCcEEe-ceEECCCCEECCCCEECCCCEE
Q 007537 347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIW---DNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVL 417 (599)
Q Consensus 347 ~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~---~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~vi 417 (599)
.||+++.|++++.|. +++||++|.|++++.|.+.... ..++|+++|.|. +|+|..+++|++++.|+++++|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 455555555555554 3677777777777777553221 224444444432 2345555555555555555554
No 183
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.79 E-value=2.4e-08 Score=98.92 Aligned_cols=99 Identities=27% Similarity=0.384 Sum_probs=76.7
Q ss_pred eeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEec---------eEECCCCEECCC
Q 007537 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDG 391 (599)
Q Consensus 322 ~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~ 391 (599)
...|...|+++++++.+.++|.=++.++.+|.|..++.++ ..+||+||+||.|+.|.+ ++|++||.||.|
T Consensus 115 a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAn 194 (271)
T COG2171 115 AIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGAN 194 (271)
T ss_pred cEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccc
Confidence 4677889999999999988888889999999999888885 569999999999999975 467777777777
Q ss_pred cEEeceEECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 392 CELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 392 ~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
++ +..|+.+|++|+|..|.+|+.+..+..
T Consensus 195 s~-----~veGV~vGdg~VV~aGv~I~~~tki~~ 223 (271)
T COG2171 195 SE-----VVEGVIVGDGCVVAAGVFITQDTKIYD 223 (271)
T ss_pred cc-----eEeeeEeCCCcEEecceEEeCCcceEE
Confidence 64 445555566666666666666655543
No 184
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.78 E-value=4.2e-08 Score=85.83 Aligned_cols=86 Identities=23% Similarity=0.238 Sum_probs=45.9
Q ss_pred eEECCCcEECCCCEECC--CcEECCCCEECCCCEEece---EECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCC
Q 007537 328 MYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDS---VIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDG 402 (599)
Q Consensus 328 ~~~~~~~~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~s---vIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~ 402 (599)
+++++++.|++++.|.. ++.||++|.|++++.|.++ .++.++.+........+.|++++.|+.++. |.++
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~-----i~~~ 76 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVV-----ILPG 76 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCE-----EcCC
Confidence 46777777777777766 6777777777777777543 222222222222223344444444444433 4444
Q ss_pred CEECCCCEECCCCEEC
Q 007537 403 VIMKAGAVLKPGVVLS 418 (599)
Q Consensus 403 ~~Ig~~~~I~~g~vig 418 (599)
+.|++++.|++++.|.
T Consensus 77 ~~ig~~~~i~~~~~v~ 92 (109)
T cd04647 77 VTIGDGAVVGAGSVVT 92 (109)
T ss_pred CEECCCCEECCCCEEe
Confidence 4444444444444444
No 185
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.78 E-value=4.2e-08 Score=93.41 Aligned_cols=75 Identities=27% Similarity=0.285 Sum_probs=39.2
Q ss_pred CcEECCCCEECCCCEE---eceEECCCCEECCCcEEec-------------eEECCCCEECCCcEE-eceEECCCCEECC
Q 007537 345 FTVIGYGTKIGSNSKI---SDSVIGEGCTIGSNVLIEG-------------SYIWDNVIIEDGCEL-RHVIVCDGVIMKA 407 (599)
Q Consensus 345 ~~~Ig~~~~Ig~~~~I---~~svIG~~~~Ig~~~~I~~-------------s~I~~~v~Ig~~~~I-~~siI~~~~~Ig~ 407 (599)
++.||+++.|++++.| .+.+||++|.|+++|.|.. ..+...++||++|.| .+++|..+++||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 4445555555555544 2457777777777777731 122334444444443 2344455555555
Q ss_pred CCEECCCCEECC
Q 007537 408 GAVLKPGVVLSF 419 (599)
Q Consensus 408 ~~~I~~g~vig~ 419 (599)
+|+|++|++|..
T Consensus 142 ~~~VgagavV~~ 153 (169)
T cd03357 142 NSVIGAGSVVTK 153 (169)
T ss_pred CCEECCCCEEcc
Confidence 555555555554
No 186
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.78 E-value=5.8e-08 Score=84.22 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=40.2
Q ss_pred ECCCCEECCCcEECC--CCEECCCCEE-eceEECCCCEECCCcE---EeceEECCCCEECCCcEEeceEECCCCEECCCC
Q 007537 336 QSRSAQVGSFTVIGY--GTKIGSNSKI-SDSVIGEGCTIGSNVL---IEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (599)
Q Consensus 336 i~~~~~I~~~~~Ig~--~~~Ig~~~~I-~~svIG~~~~Ig~~~~---I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~ 409 (599)
|++++.|+++++|+. +++|++++.| .++.|+.++.|+.++. +..++|++++.|+.++.+. .+++|++++
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~-----~~~~Ig~~~ 79 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKIL-----GNITIGDNV 79 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEE-----CcCEECCCC
Confidence 334444444444433 2334444444 2344566666666664 4666777777777776653 334444444
Q ss_pred EECCCCEECC
Q 007537 410 VLKPGVVLSF 419 (599)
Q Consensus 410 ~I~~g~vig~ 419 (599)
.|+++++|..
T Consensus 80 ~i~~~~~i~~ 89 (101)
T cd03354 80 KIGANAVVTK 89 (101)
T ss_pred EECCCCEECc
Confidence 4444444443
No 187
>PRK10191 putative acyl transferase; Provisional
Probab=98.76 E-value=4.1e-08 Score=90.85 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=5.3
Q ss_pred EECCCCEECCCcE
Q 007537 381 YIWDNVIIEDGCE 393 (599)
Q Consensus 381 ~I~~~v~Ig~~~~ 393 (599)
.|+++++||.+|.
T Consensus 94 ~IGd~~~Ig~~~~ 106 (146)
T PRK10191 94 HIGNGVELGANVI 106 (146)
T ss_pred EECCCcEEcCCCE
Confidence 3444444444433
No 188
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.76 E-value=8.1e-08 Score=92.52 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=45.7
Q ss_pred CCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEec-------------eEECCCCEECCCcEE-eceEECCC
Q 007537 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEG-------------SYIWDNVIIEDGCEL-RHVIVCDG 402 (599)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~-------------s~I~~~v~Ig~~~~I-~~siI~~~ 402 (599)
+.+..||.+++|+.+|+|++.+.| .||++|.|+++|.|.. ..+...++||++|.| .+++|..+
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~g 147 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPG 147 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCC
Confidence 344444444444444444444332 7888888888888841 223445555555554 24446666
Q ss_pred CEECCCCEECCCCEECCC
Q 007537 403 VIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 403 ~~Ig~~~~I~~g~vig~~ 420 (599)
++||++++|++|++|...
T Consensus 148 v~IG~~~vIgagsvV~~d 165 (183)
T PRK10092 148 VTIGDNVVVASGAVVTKD 165 (183)
T ss_pred CEECCCCEECCCCEEccc
Confidence 666666666666666553
No 189
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.76 E-value=3.6e-08 Score=108.68 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=47.3
Q ss_pred ecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCC
Q 007537 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGV 403 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siI~~~~ 403 (599)
.+++++++++.|++++.|. ++.||.+|.|++ +.+.+++||++|.||.++.|. ++.|++++.|++++.|.+++|++++
T Consensus 281 ~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~ 358 (458)
T PRK14354 281 KGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT 358 (458)
T ss_pred ecceEECCCCEECCCcEEe-ccEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCC
Confidence 3455666666666666552 455566666552 344566666666666666664 5666666666666666555555555
Q ss_pred EECC
Q 007537 404 IMKA 407 (599)
Q Consensus 404 ~Ig~ 407 (599)
.|+.
T Consensus 359 ~i~~ 362 (458)
T PRK14354 359 KVSH 362 (458)
T ss_pred Eecc
Confidence 4433
No 190
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.75 E-value=3e-08 Score=108.59 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=71.3
Q ss_pred eEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECC----------------C---CEECCCcEEeceEECCCCEE
Q 007537 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE----------------G---CTIGSNVLIEGSYIWDNVII 388 (599)
Q Consensus 328 ~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~----------------~---~~Ig~~~~I~~s~I~~~v~I 388 (599)
.+++.++.|+ +|.| .+++||++|+|+++|+|.+|+|+. + +.||++|+|.+++|+++|+|
T Consensus 316 s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I 393 (436)
T PLN02241 316 SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI 393 (436)
T ss_pred eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence 6788899998 8888 478999999999999998887744 3 38999999999999999999
Q ss_pred CCCcEEec-eEECCCCEECCCCEECCC-CEECCCCC
Q 007537 389 EDGCELRH-VIVCDGVIMKAGAVLKPG-VVLSFKPT 422 (599)
Q Consensus 389 g~~~~I~~-siI~~~~~Ig~~~~I~~g-~vig~~~~ 422 (599)
|++|.|.+ .-+....++|++++|+.| |+||.+..
T Consensus 394 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 429 (436)
T PLN02241 394 GKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAV 429 (436)
T ss_pred CCCcEEecccccCCccccccccEEeCCEEEEcCCcE
Confidence 99999853 224444444555555555 35555443
No 191
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.74 E-value=7.7e-08 Score=91.64 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=24.4
Q ss_pred cceEECCCcEECCCCEEC--CCcEECCCCEECCCCEE
Q 007537 326 RGMYRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKI 360 (599)
Q Consensus 326 ~~~~~~~~~~i~~~~~I~--~~~~Ig~~~~Ig~~~~I 360 (599)
..+.+++++.|+.++.|. .++.||++|.|++++.|
T Consensus 61 ~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I 97 (169)
T cd03357 61 YNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQI 97 (169)
T ss_pred CcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEE
Confidence 356677777777776664 35677777777777777
No 192
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.72 E-value=5.2e-08 Score=98.89 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=44.0
Q ss_pred ceEECCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCC---cEEeceEECCCCEECCCcEEeceEECCC
Q 007537 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSN---VLIEGSYIWDNVIIEDGCELRHVIVCDG 402 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~---~~I~~s~I~~~v~Ig~~~~I~~siI~~~ 402 (599)
++.+++++.|++++.|+.. .+++||++++|+ ++.|+.+|+||.+ +......|+++|.||.||.| ..+
T Consensus 141 gidI~~~a~IG~g~~I~h~----~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~I-----lgg 211 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHA----TGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKI-----LGN 211 (273)
T ss_pred eeEecCcceECCCeEEcCC----CCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEE-----cCC
Confidence 4444455555554444321 234445555552 4556677777643 22345678888888888774 334
Q ss_pred CEECCCCEECCCCEECC
Q 007537 403 VIMKAGAVLKPGVVLSF 419 (599)
Q Consensus 403 ~~Ig~~~~I~~g~vig~ 419 (599)
++||++++|++|++|..
T Consensus 212 v~IG~~a~IGAgSvV~~ 228 (273)
T PRK11132 212 IEVGRGAKIGAGSVVLQ 228 (273)
T ss_pred CEECCCCEECCCCEECc
Confidence 44444444444444443
No 193
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.72 E-value=4.2e-08 Score=100.10 Aligned_cols=120 Identities=17% Similarity=0.116 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeC---CcchHHHHHHHHHHC--------CCcEEEEEccCchHHHHHHHHhcccC
Q 007537 30 QAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------GVAEVFVFCCAHSKQVIDYLENSEWF 98 (599)
Q Consensus 30 ~aVILA~g~gtR~~PlT~~~PK~LLpi~---n~PlI~y~Le~L~~~--------gv~eV~vv~~~~~~~i~~~l~~~~w~ 98 (599)
-+||||||.||||+ ...||+|+||+ |+|+|+|+++.+... +|..+++...+..+.+++|+++..+.
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~ 78 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK 78 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence 58999999999996 58999999999 999999999999873 45555444445578899999985421
Q ss_pred CCCCceEEEEec-CCcCCHHHHHHHHHHhcccC-CCEEEEcCCeechhhHHHHHHHHHHhh
Q 007537 99 SQPNFTVKTIES-HNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERK 157 (599)
Q Consensus 99 ~~~~~~i~~v~~-~~~~~~g~alr~~~~~~~i~-~dfllv~gD~v~~~~l~~ll~~h~~~~ 157 (599)
.+ .+.++.+ ..+....+..... ....+ ..+..-+||++..+....+++.|++++
T Consensus 79 --~~-~v~~f~Q~~~P~~~~~~~~~~--~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G 134 (266)
T cd04180 79 --NS-YVITFMQGKLPLKNDDDARDP--HNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKG 134 (266)
T ss_pred --CC-ceEEEEeCCceEEeCCCCccc--CCCCceeeccCCcHHHHHHHHHCChHHHHHHcC
Confidence 11 2333322 2232222222211 11111 114455677777777777777777664
No 194
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=98.70 E-value=8.3e-07 Score=88.36 Aligned_cols=206 Identities=13% Similarity=0.143 Sum_probs=123.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCC-CcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEe
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~g-v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~ 109 (599)
|||+|.|.++||. .|.|+|++|+|||.|+++.+..++ +++|+|.+. .+.+.++... + +..+.+..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~--~----g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS--Y----GASVPFLR 67 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH--c----CCEeEEeC
Confidence 7999999999994 599999999999999999999987 566766443 3456665553 1 23333221
Q ss_pred ----cCCcCCHHHHHHHHHHhc--ccCCC-EEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccC
Q 007537 110 ----SHNIISAGDALRLIYEQN--VIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (599)
Q Consensus 110 ----~~~~~~~g~alr~~~~~~--~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~ 180 (599)
.....+..++++.....- .-..+ ++++.+|. +...++..+++.+++. ++...+-+.+.... +
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~-----~~ds~~sv~~~~~~----~ 138 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQP-----NAHFVFSVTSFAFP----I 138 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhC-----CCCEEEEeeccCCC----h
Confidence 123456777777654321 01234 89999999 6677999999998763 23333333333211 1
Q ss_pred cccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHHHh
Q 007537 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRH 260 (599)
Q Consensus 181 ~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir~d 260 (599)
.+ .+..++ +|++..+...... ...-.+++ + =..+..+|+++++.+.- .
T Consensus 139 ~~------~~~~~~-~g~~~~~~~~~~~-~~rQd~~~--------~----y~~nga~y~~~~~~~~~--~---------- 186 (222)
T TIGR03584 139 QR------AFKLKE-NGGVEMFFPEHFN-TRSQDLEE--------A----YHDAGQFYWGKSQAWLE--S---------- 186 (222)
T ss_pred HH------heEECC-CCcEEecCCCccc-CCCCCCch--------h----eeeCCeEEEEEHHHHHh--c----------
Confidence 11 122332 3444333321100 00000111 0 01356789988765421 0
Q ss_pred hhhccccccccCCeeEEEeccccceeeccChhHHHHHH
Q 007537 261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS 298 (599)
Q Consensus 261 fv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as 298 (599)
....+.+++.|+++.....+|+++.++..+-
T Consensus 187 -------~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae 217 (222)
T TIGR03584 187 -------GPIFSPHSIPIVLPRHLVQDIDTLEDWERAE 217 (222)
T ss_pred -------CCccCCCcEEEEeCccceeCCCCHHHHHHHH
Confidence 0124678889999877899999999988763
No 195
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.70 E-value=1.4e-07 Score=82.72 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=8.9
Q ss_pred ECCCCEECCCCEECCCCEEC
Q 007537 399 VCDGVIMKAGAVLKPGVVLS 418 (599)
Q Consensus 399 I~~~~~Ig~~~~I~~g~vig 418 (599)
|..+++|+++|.|+++++|-
T Consensus 71 i~~g~~Ig~~~~i~~gs~v~ 90 (107)
T cd05825 71 VGPGVTIGEGAVVGARSVVV 90 (107)
T ss_pred ECCCCEECCCCEECCCCEEe
Confidence 44444444444444444443
No 196
>PLN02357 serine acetyltransferase
Probab=98.70 E-value=6.8e-08 Score=100.75 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=25.6
Q ss_pred ceEECCCCEECCCcEE-eceEECCCCEECCCCEE----CCCCEECCCC
Q 007537 379 GSYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVL----KPGVVLSFKP 421 (599)
Q Consensus 379 ~s~I~~~v~Ig~~~~I-~~siI~~~~~Ig~~~~I----~~g~vig~~~ 421 (599)
+++|+++|.||.||.| .+..||++++||++++| ++++++..+|
T Consensus 278 ~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G~P 325 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNP 325 (360)
T ss_pred CceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEECCC
Confidence 3677777777777665 35566666666666654 3344444444
No 197
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.69 E-value=9.8e-08 Score=96.93 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=43.7
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEEe-ceE-ECCCCE---ECCCcEE-eceEECCCCEECCCcEEe-c----eE
Q 007537 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSV-IGEGCT---IGSNVLI-EGSYIWDNVIIEDGCELR-H----VI 398 (599)
Q Consensus 330 ~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~sv-IG~~~~---Ig~~~~I-~~s~I~~~v~Ig~~~~I~-~----si 398 (599)
+..+++|++++.|..++.||+||.|.++++|. ++. +|.+++ |-.+++| ++|.|++++.| ++++. + +.
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI--g~tLsGg~~~~V~ 252 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST--MGTLSGGGNIVIS 252 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE--eEEEeCCCceeEE
Confidence 33455555555555555555555555555552 333 454444 4444444 34444444444 22332 2 44
Q ss_pred ECCCCEECCCCEECCCCEECCCCCcC
Q 007537 399 VCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 399 I~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
||++|.||.++.| |..||.++.++
T Consensus 253 IGe~~lIGagA~I--GI~IGd~~iIG 276 (341)
T TIGR03536 253 VGEGCLLGANAGI--GIPLGDRCTVE 276 (341)
T ss_pred ECCCcEECCCCEE--eeEECCCCEEC
Confidence 5555555555544 44444444443
No 198
>PLN02739 serine acetyltransferase
Probab=98.69 E-value=5.7e-08 Score=100.53 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=24.7
Q ss_pred EECCCCEECCCcEEe---------ceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEEC
Q 007537 364 VIGEGCTIGSNVLIE---------GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLS 418 (599)
Q Consensus 364 vIG~~~~Ig~~~~I~---------~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig 418 (599)
+||++|.|..+|+|. ...|+++|.||.|++| ..+++||++++|++|++|-
T Consensus 233 vIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~I-----lG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 233 VIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTI-----LGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred EECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEE-----eCCeEECCCCEECCCCEEC
Confidence 444455555555443 2456666666666654 3334444444444444443
No 199
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.68 E-value=1.1e-07 Score=77.54 Aligned_cols=63 Identities=30% Similarity=0.485 Sum_probs=39.0
Q ss_pred EECCCcEECCCCEECCCcEECCCCEECCCCEEec---------eEECCCCEECCCcEE-eceEECCCCEECCC
Q 007537 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD---------SVIGEGCTIGSNVLI-EGSYIWDNVIIEDG 391 (599)
Q Consensus 329 ~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~---------svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~ 391 (599)
++++++.|+++++|++++.||++|.|++++.|.+ .+||++|.|+.++.| .++.|++++.|+++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~ 74 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAG 74 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcC
Confidence 4677888888888877788888888888887754 344444444444444 23333333333333
No 200
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.68 E-value=1.6e-07 Score=91.69 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=52.6
Q ss_pred ecceEECCCcEECCCCEEC--CCcEECCCCEECCCCEEece-------------EECCCCEECCCcEE-eceEECCCCEE
Q 007537 325 RRGMYRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKISDS-------------VIGEGCTIGSNVLI-EGSYIWDNVII 388 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~--~~~~Ig~~~~Ig~~~~I~~s-------------vIG~~~~Ig~~~~I-~~s~I~~~v~I 388 (599)
..++++|.++.|..+|.|. .++.||++|.|++++.|... ..+..++||++|+| .+++|..+++|
T Consensus 73 g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~I 152 (203)
T PRK09527 73 GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTI 152 (203)
T ss_pred CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEE
Confidence 4577788888888888773 35788888888888877410 11222333333333 23334444444
Q ss_pred CCCcEEeceEECCCCEECCCCEECCCCEECCCCC
Q 007537 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPT 422 (599)
Q Consensus 389 g~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~ 422 (599)
|++|+ |+.+++|... |++++++..+|.
T Consensus 153 G~~~v-----IgagsvV~kd--vp~~~v~~G~PA 179 (203)
T PRK09527 153 GDNSV-----IGAGSVVTKD--IPPNVVAAGVPC 179 (203)
T ss_pred CCCCE-----ECCCCEEccc--CCCCcEEEeeCC
Confidence 44433 4444444443 567888888874
No 201
>PLN02357 serine acetyltransferase
Probab=98.67 E-value=9.5e-08 Score=99.69 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred eEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEECCCCEECCCC
Q 007537 363 SVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (599)
Q Consensus 363 svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~ 409 (599)
++||++|.||.|+.| .++.|++++.||.+++|.+.+....+++|.-+
T Consensus 279 piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G~PA 326 (360)
T PLN02357 279 PKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPA 326 (360)
T ss_pred ceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEECCCe
Confidence 344444444444444 34444444444444444444433333344333
No 202
>PRK10502 putative acyl transferase; Provisional
Probab=98.67 E-value=9.5e-08 Score=92.13 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=38.4
Q ss_pred ceEECCCCEECCCcEEe---ceEECCCCEECCCcEEe----------------ceEECCCCEECCCCEECCCCEECCCCC
Q 007537 362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELR----------------HVIVCDGVIMKAGAVLKPGVVLSFKPT 422 (599)
Q Consensus 362 ~svIG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~----------------~siI~~~~~Ig~~~~I~~g~vig~~~~ 422 (599)
+..||++|.||+++.|. .+.|++++.|+.+|.|. ..+||++|.||.+++|.+|+.||.++.
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 45667777777777664 45677777777666651 235666666666666655555555554
Q ss_pred cC
Q 007537 423 VH 424 (599)
Q Consensus 423 ~~ 424 (599)
+.
T Consensus 151 Ig 152 (182)
T PRK10502 151 VG 152 (182)
T ss_pred EC
Confidence 43
No 203
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.66 E-value=1.9e-07 Score=89.94 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=57.3
Q ss_pred eecceEECCCcEECCCCEECCCc--EECCCCEECCCCEEec-------------eEECCCCEECCCcEE-eceEECCCCE
Q 007537 324 ERRGMYRALEIEQSRSAQVGSFT--VIGYGTKIGSNSKISD-------------SVIGEGCTIGSNVLI-EGSYIWDNVI 387 (599)
Q Consensus 324 ~~~~~~~~~~~~i~~~~~I~~~~--~Ig~~~~Ig~~~~I~~-------------svIG~~~~Ig~~~~I-~~s~I~~~v~ 387 (599)
...+++++.++.|..+|.|+..+ .||++|.|++++.|.. ..++..+.||++|+| .+++|.++++
T Consensus 70 ~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~ 149 (183)
T PRK10092 70 YGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVT 149 (183)
T ss_pred ecCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCE
Confidence 34577888888888888876654 7888888888888831 223444555555544 3444555555
Q ss_pred ECCCcEEeceEECCCCEECCCCEECCCCEECCCCC
Q 007537 388 IEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPT 422 (599)
Q Consensus 388 Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~ 422 (599)
||++|+ |+.+++|... |++++++..+|.
T Consensus 150 IG~~~v-----IgagsvV~~d--i~~~~i~~G~PA 177 (183)
T PRK10092 150 IGDNVV-----VASGAVVTKD--VPDNVVVGGNPA 177 (183)
T ss_pred ECCCCE-----ECCCCEEccc--cCCCcEEEecCc
Confidence 555444 4555555443 567778777774
No 204
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.64 E-value=9.3e-08 Score=92.96 Aligned_cols=59 Identities=20% Similarity=0.141 Sum_probs=51.2
Q ss_pred cceeeecceEECCCcEECCCCEECCCcEECCCCEECCCCEEec-------------eEECCCCEECCCcEEe
Q 007537 320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD-------------SVIGEGCTIGSNVLIE 378 (599)
Q Consensus 320 ~~~~~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~-------------svIG~~~~Ig~~~~I~ 378 (599)
+|....+++.++.++.|...++|.+.+.||.+++|.+.+.|+. .+||++|.|-++|+|+
T Consensus 26 pf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~ 97 (260)
T COG1043 26 PFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIH 97 (260)
T ss_pred ceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEe
Confidence 6778888888888888888888888999999999999998852 6899999999999996
No 205
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.64 E-value=1.2e-07 Score=100.98 Aligned_cols=84 Identities=31% Similarity=0.451 Sum_probs=42.9
Q ss_pred CCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEE-eceEECCCCEECCCcEEeceEECCCCEECCCC-EECC
Q 007537 337 SRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA-VLKP 413 (599)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~-~I~~ 413 (599)
.+++.+.+++.||++|.| .++.| +.++||++|.|+ ++.| .+|+|+++++|+ +|.|.+|+|+++++|+.++ .+.
T Consensus 246 ~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~- 321 (353)
T TIGR01208 246 DDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIV- 321 (353)
T ss_pred CCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceee-
Confidence 444555555555555555 44444 344455555554 2222 344444444444 3445567777777776652 443
Q ss_pred CCEECCCCCcC
Q 007537 414 GVVLSFKPTVH 424 (599)
Q Consensus 414 g~vig~~~~~~ 424 (599)
+++|+.++.+.
T Consensus 322 ~~ii~~~~~i~ 332 (353)
T TIGR01208 322 DSVIGKKVRIK 332 (353)
T ss_pred cCEEcCCCEEC
Confidence 45555554444
No 206
>PRK10191 putative acyl transferase; Provisional
Probab=98.63 E-value=1.8e-07 Score=86.59 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=4.9
Q ss_pred CCEECCCcEE
Q 007537 385 NVIIEDGCEL 394 (599)
Q Consensus 385 ~v~Ig~~~~I 394 (599)
.+.||++|.|
T Consensus 92 ~~~IGd~~~I 101 (146)
T PRK10191 92 CPHIGNGVEL 101 (146)
T ss_pred CCEECCCcEE
Confidence 3455555553
No 207
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=3.8e-06 Score=81.32 Aligned_cols=233 Identities=14% Similarity=0.117 Sum_probs=144.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
+++-+||.|--.+|||- -|||-.|+|+|||.|+.++..++|.++|+|-+.+ +.|.+++.+- |..+.
T Consensus 2 ~~~~viIPAR~~STRLp------gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~------G~~av 67 (247)
T COG1212 2 MKFVVIIPARLASTRLP------GKPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAF------GGEAV 67 (247)
T ss_pred CceEEEEecchhcccCC------CCchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHh------CCEEE
Confidence 35667888888889987 5999999999999999999999999999998864 6677777651 22222
Q ss_pred EEecCC-cCCHHHHHHHHHHhcccCCC-E-EEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCc
Q 007537 107 TIESHN-IISAGDALRLIYEQNVIHGD-F-VLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (599)
Q Consensus 107 ~v~~~~-~~~~g~alr~~~~~~~i~~d-f-llv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~ 181 (599)
....+ ..|+ +-+.+...+.-+..+ . +=+-||. +....+..+++..++.. -.++|++.+...+. .
T Consensus 68 -mT~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~----~~~aTl~~~i~~~e-----e 136 (247)
T COG1212 68 -MTSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSN----ADMATLAVKITDEE-----E 136 (247)
T ss_pred -ecCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCC----cceeeeeeecCCHH-----H
Confidence 22222 2333 333333333324444 3 3367999 66667888888777652 35677777665432 2
Q ss_pred ccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccc--hhhH-H
Q 007537 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD--YQHL-R 258 (599)
Q Consensus 182 r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd--~q~i-r 258 (599)
.+.++-.-++.|. .|+-|+|...+-+......-+ -.-|.-.|||-+...+|.-|..--. .+.+ +
T Consensus 137 ~~nPN~VKvV~d~-~g~ALYFSRs~iP~~rd~~~~------------~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~ 203 (247)
T COG1212 137 AFNPNVVKVVLDK-EGYALYFSRAPIPYGRDNFGG------------TPFLRHIGIYAYRAGFLERFVALKPSPLEKIES 203 (247)
T ss_pred hcCCCcEEEEEcC-CCcEEEEEcCCCCCcccccCC------------cchhheeehHHhHHHHHHHHHhcCCchhHHHHH
Confidence 3343444445564 689999988764221100000 0123457888888887775542110 0000 0
Q ss_pred HhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHh
Q 007537 259 RHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (599)
Q Consensus 259 ~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~di 301 (599)
..-++ -...|.+|++.+.++-....|+|++++..+-+-+
T Consensus 204 LEQLR----~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~ 242 (247)
T COG1212 204 LEQLR----VLENGEKIHVEIVKEVPSIGVDTPEDLERVRKIL 242 (247)
T ss_pred HHHHH----HHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHH
Confidence 01111 1236999999999866668999999999886544
No 208
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.63 E-value=3e-08 Score=100.39 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=80.1
Q ss_pred eecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCC
Q 007537 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDG 402 (599)
Q Consensus 324 ~~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~ 402 (599)
..+++.+.+.+.++.+|.|+++++||.+|+|+.|+.|.+|+|-.+..++..+.|..++++.++.||.+++|. +|+||++
T Consensus 261 i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~n 340 (371)
T KOG1322|consen 261 IVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKN 340 (371)
T ss_pred ccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccc
Confidence 345677888889999999999999999999999999999999999999999999999999999999999874 5777777
Q ss_pred CEECCCCEECCCC
Q 007537 403 VIMKAGAVLKPGV 415 (599)
Q Consensus 403 ~~Ig~~~~I~~g~ 415 (599)
|+|.+.-.+..|.
T Consensus 341 V~V~d~~~vn~g~ 353 (371)
T KOG1322|consen 341 VIVADEDYVNEGS 353 (371)
T ss_pred eEEecccccccce
Confidence 7777766666553
No 209
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.62 E-value=1.5e-07 Score=88.93 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=41.7
Q ss_pred eEECCCcEECC--CCEECCCcEECCCCEECCCCEEec---------eEECCCCEECCCcEE-eceEECCCCEECCCcEEe
Q 007537 328 MYRALEIEQSR--SAQVGSFTVIGYGTKIGSNSKISD---------SVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR 395 (599)
Q Consensus 328 ~~~~~~~~i~~--~~~I~~~~~Ig~~~~Ig~~~~I~~---------svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~ 395 (599)
+.+++++.|+. ++.|++++.||++|.|++++.|+. ++||++|.||.+++| .++.|+++++||.++.
T Consensus 68 ~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~-- 145 (162)
T TIGR01172 68 ARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSV-- 145 (162)
T ss_pred CEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCE--
Confidence 33444444432 244555555555555555555532 356666666666655 3344555555554444
Q ss_pred ceEECCCCEECCCCEECCCCEECCCC
Q 007537 396 HVIVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 396 ~siI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
|.++ |++++++..+|
T Consensus 146 ---------V~~d--vp~~~~~~G~P 160 (162)
T TIGR01172 146 ---------VLKD--VPPGATVVGVP 160 (162)
T ss_pred ---------ECCC--CCCCCEEEeec
Confidence 3433 45666655554
No 210
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.61 E-value=3e-07 Score=80.67 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=12.5
Q ss_pred ECCCCEECCCCEECCCCEECCCCCc
Q 007537 399 VCDGVIMKAGAVLKPGVVLSFKPTV 423 (599)
Q Consensus 399 I~~~~~Ig~~~~I~~g~vig~~~~~ 423 (599)
|+.++.|..+++|+++|+|+.+..+
T Consensus 65 ig~~~~i~~g~~Ig~~~~i~~gs~v 89 (107)
T cd05825 65 VAAEAFVGPGVTIGEGAVVGARSVV 89 (107)
T ss_pred ECCCCEECCCCEECCCCEECCCCEE
Confidence 4455555555555555555555443
No 211
>PLN02694 serine O-acetyltransferase
Probab=98.61 E-value=1.4e-07 Score=95.79 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=3.8
Q ss_pred CCCCEECCCC
Q 007537 412 KPGVVLSFKP 421 (599)
Q Consensus 412 ~~g~vig~~~ 421 (599)
++++++..+|
T Consensus 250 P~~~~v~G~P 259 (294)
T PLN02694 250 PPRTTAVGNP 259 (294)
T ss_pred CCCcEEEccC
Confidence 3333333333
No 212
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.61 E-value=1.9e-07 Score=101.50 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=63.8
Q ss_pred ecceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec
Q 007537 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH 396 (599)
Q Consensus 325 ~~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~ 396 (599)
..+.++++++.|+ ++.|. +++||++|+|++++.|.+|+|+++|.||++|+|.+|+|+++++|+++++|.+
T Consensus 313 ~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 313 AQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred EEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 3467888888888 88885 6999999999999999999999999999999999999999999999998754
No 213
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.60 E-value=5.6e-08 Score=86.53 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=47.2
Q ss_pred cceEECCCcEECCCCEECC---CcEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEeceEECCCCEEC
Q 007537 326 RGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEGSYIWDNVIIE 389 (599)
Q Consensus 326 ~~~~~~~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~-------------~svIG~~~~Ig~~~~I~~s~I~~~v~Ig 389 (599)
+++.+...+.+..++.|.+ ++.+|..|+++.+++|+ +..||+++.|+++|++....|+..|++|
T Consensus 32 QNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~G 111 (184)
T KOG3121|consen 32 QNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLG 111 (184)
T ss_pred ceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEec
Confidence 4555666666666666644 46666666666666663 2356666666666666555555555555
Q ss_pred CCcEEe-ceEECCCCEECCCCEE
Q 007537 390 DGCELR-HVIVCDGVIMKAGAVL 411 (599)
Q Consensus 390 ~~~~I~-~siI~~~~~Ig~~~~I 411 (599)
.+|+|. +|++-+.++|-+++++
T Consensus 112 knaviGrrCVlkdCc~ild~tVl 134 (184)
T KOG3121|consen 112 KNAVIGRRCVLKDCCRILDDTVL 134 (184)
T ss_pred cceeEcCceEhhhheeccCCccc
Confidence 555542 3333333333333333
No 214
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1e-07 Score=94.99 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=70.0
Q ss_pred CEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEEC
Q 007537 340 AQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLS 418 (599)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig 418 (599)
+.|.++++|.+.+++.+.++|+ |..||.+++||+|++|.+|+|.+++.|.+|+.+-+||||.++.||.+++|+ |.=+-
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe-~~pv~ 361 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVE-GIPVE 361 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeec-ccccc
Confidence 4466788888888888888885 788999999999999999999999999999999999999999999999997 44333
Q ss_pred CCC
Q 007537 419 FKP 421 (599)
Q Consensus 419 ~~~ 421 (599)
.++
T Consensus 362 ~s~ 364 (407)
T KOG1460|consen 362 PSP 364 (407)
T ss_pred cCC
Confidence 333
No 215
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.60 E-value=1.1e-07 Score=101.84 Aligned_cols=73 Identities=22% Similarity=0.376 Sum_probs=62.3
Q ss_pred CCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 350 YGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 350 ~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
..+.|++++.|.+|+||++|+|+ ..|.+|+|+++++|+++|.|.+|+|++++.|+++++|. +|+||.++.+..
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~-~~ii~~~~~v~~ 349 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE-NVIIDKDVVIEP 349 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE-EEEECCCCEECC
Confidence 55666667777889999999997 46899999999999999999999999999999999886 688888776653
No 216
>PLN02739 serine acetyltransferase
Probab=98.59 E-value=1.7e-07 Score=97.14 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=38.0
Q ss_pred EECCCcEECC--CCEECCCcEECCCCEECCCCEEec---------eEECCCCEECCCcEEeceEECCCCEECCCcEEece
Q 007537 329 YRALEIEQSR--SAQVGSFTVIGYGTKIGSNSKISD---------SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHV 397 (599)
Q Consensus 329 ~~~~~~~i~~--~~~I~~~~~Ig~~~~Ig~~~~I~~---------svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~s 397 (599)
.+|.++.|.. +++|++++.||.+|.|..+++|+. .+||++|.||.|+.| ..+++||++|.
T Consensus 213 ~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~I-----lG~V~IGd~ai---- 283 (355)
T PLN02739 213 RIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTI-----LGNISIGAGAM---- 283 (355)
T ss_pred cccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEE-----eCCeEECCCCE----
Confidence 3444444432 444445555555555555555531 345555555555544 33344444333
Q ss_pred EECCCCEECCCCEECCCCEECCCC
Q 007537 398 IVCDGVIMKAGAVLKPGVVLSFKP 421 (599)
Q Consensus 398 iI~~~~~Ig~~~~I~~g~vig~~~ 421 (599)
||.|++|... |++++++..+|
T Consensus 284 -IGAGSVV~kD--VP~~stvvG~P 304 (355)
T PLN02739 284 -VAAGSLVLKD--VPSHSMVAGNP 304 (355)
T ss_pred -ECCCCEECCC--CCCCcEEEecC
Confidence 3444444432 45566665555
No 217
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=98.59 E-value=3.4e-07 Score=90.66 Aligned_cols=112 Identities=28% Similarity=0.365 Sum_probs=75.3
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHC-CCcEEEEEccCc-hHHHHHHHHhcccCCCCCceEE
Q 007537 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 29 l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~-gv~eV~vv~~~~-~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
+-|||||||.|+||+. ..||.+++++|+|+|.|+|+.+... .+++|+|+|... .+.+++.+.. .++.
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK--------KKVK 69 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH--------TTEE
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC--------CCEE
Confidence 3589999999999985 7899999999999999999999986 689999998765 4666666655 1344
Q ss_pred EEecCC--cCCHHHHHHHHHHhcccCCCEEEEcCCe---echhhHHHHHHHHHH
Q 007537 107 TIESHN--IISAGDALRLIYEQNVIHGDFVLISGDT---VSNMLLTQALQEHKE 155 (599)
Q Consensus 107 ~v~~~~--~~~~g~alr~~~~~~~i~~dfllv~gD~---v~~~~l~~ll~~h~~ 155 (599)
++..-. ..|+..+|..+.. ..++++++==. ++...+.++++..++
T Consensus 70 iv~GG~tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 70 IVEGGATRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp EEE--SSHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence 454322 2344455554321 12677775222 566678888887665
No 218
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.59 E-value=1.7e-07 Score=100.12 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=51.7
Q ss_pred CCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcC
Q 007537 350 YGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 350 ~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
+.+.|++++.|.+|+||++|+|+.+ +|.+|+|+++++|+++|+|.+|+|++++.|+.+++|. +|+||.++.+.
T Consensus 282 ~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~-~~ivg~~~~i~ 354 (361)
T TIGR02091 282 PAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR-NAIIDKNVRIG 354 (361)
T ss_pred CceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe-eeEECCCCEEC
Confidence 3444555555566777777777765 6777777777777777777777777777777777774 67777766655
No 219
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.56 E-value=1.7e-06 Score=90.73 Aligned_cols=165 Identities=13% Similarity=0.234 Sum_probs=102.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeC---CcchHHHHHHHHHHCC-----------CcEEEEEcc-CchHHHHH
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAAG-----------VAEVFVFCC-AHSKQVID 90 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~---n~PlI~y~Le~L~~~g-----------v~eV~vv~~-~~~~~i~~ 90 (599)
+.++.+||||||.|||| +...||+|+||+ |+|++++.++.+...+ .-.++|.++ +..+.+++
T Consensus 13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 45689999999999999 568899999998 7999999999999852 124567777 55788999
Q ss_pred HHHhcccCCCCCceEEEEec---------------------CCcCCHHHHHHHHHHhcccC-----C-C-EEEEcCCee-
Q 007537 91 YLENSEWFSQPNFTVKTIES---------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTV- 141 (599)
Q Consensus 91 ~l~~~~w~~~~~~~i~~v~~---------------------~~~~~~g~alr~~~~~~~i~-----~-d-fllv~gD~v- 141 (599)
|+++..|.....-.+.++.| ..+.|.|+..+.+....++. + . +.+.+.|.+
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 99986553221113443322 13457888888775544442 2 2 566677773
Q ss_pred chhhHHHHHHHHHHhhccCCCceEEEEEe-ecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCC
Q 007537 142 SNMLLTQALQEHKERKKKDNNAVMTMIIK-KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (599)
Q Consensus 142 ~~~~l~~ll~~h~~~~~~d~~a~mT~~~~-~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~ 207 (599)
...---.+|-.|..+ ++.|.+-+. +..+. .+-| +++.....-+|+.|.+.|+
T Consensus 170 ~~~~Dp~~lG~~~~~-----~~~~~~kvv~k~~~~-----ekvG----~l~~~~g~~~vvEysel~~ 222 (323)
T cd04193 170 VKVADPVFIGFCISK-----GADVGAKVVRKRYPT-----EKVG----VVVLVDGKPQVVEYSEISD 222 (323)
T ss_pred ccccCHHHhHHHHHc-----CCceEEEEEECCCCC-----Ccee----EEEEECCeEEEEEeecCCH
Confidence 323223345555554 366666443 33222 2333 4443211335777777654
No 220
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.56 E-value=3.7e-07 Score=89.09 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=46.9
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCC-cchHHHHHHHHHHCCCcEEEEEccC
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA 83 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n-~PlI~y~Le~L~~~gv~eV~vv~~~ 83 (599)
.+++.+||||||.++||+. +|+|+|+.| +|||+|+++.|... +++|+|++++
T Consensus 6 ~~~i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 6 IDNIPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred ccCceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc
Confidence 3568899999999999974 999999999 99999999999987 8889888875
No 221
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.54 E-value=3.7e-07 Score=88.55 Aligned_cols=108 Identities=17% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
..|.+||||||.++|| . +|+|++++|+|||+|+++.|....- .++|......++ |... + +.
T Consensus 3 ~~~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~-------g--~~ 63 (192)
T COG0746 3 TPMTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF-------G--LP 63 (192)
T ss_pred CCceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc-------C--Cc
Confidence 5789999999999999 3 8999999999999999999999755 555554444332 3222 2 22
Q ss_pred EEecCCcC-CHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHH
Q 007537 107 TIESHNII-SAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (599)
Q Consensus 107 ~v~~~~~~-~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~ 155 (599)
++...... |.-..+... ......+ +++++||+ +...-+..+....++
T Consensus 64 vv~D~~~~~GPL~Gi~~a--l~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~ 114 (192)
T COG0746 64 VVPDELPGFGPLAGILAA--LRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQ 114 (192)
T ss_pred eeecCCCCCCCHHHHHHH--HHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcc
Confidence 33332222 433334332 2223344 89999999 444455555554443
No 222
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.53 E-value=5.5e-07 Score=78.04 Aligned_cols=54 Identities=30% Similarity=0.454 Sum_probs=23.1
Q ss_pred EECCCCEECCCcEEeceEECCCCEECCCcE---EeceEECCCCEECCCCEECCCCEECCCCC
Q 007537 364 VIGEGCTIGSNVLIEGSYIWDNVIIEDGCE---LRHVIVCDGVIMKAGAVLKPGVVLSFKPT 422 (599)
Q Consensus 364 vIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~---I~~siI~~~~~Ig~~~~I~~g~vig~~~~ 422 (599)
+||+++.||++|.| ++++.|+.++. +..++|++++.|+.++.+.++++||.+..
T Consensus 24 ~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~ 80 (101)
T cd03354 24 VIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVK 80 (101)
T ss_pred EECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCE
Confidence 44444555444442 33333333332 33444444444444444444444444433
No 223
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.52 E-value=5.5e-07 Score=91.16 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=60.8
Q ss_pred CCCcEECCCCEECCCcEECCCCEECCCCEE-ece-EECCCCEECCCcEE-eceEECCCCEECCCcEEec---------eE
Q 007537 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDS-VIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRH---------VI 398 (599)
Q Consensus 331 ~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s-vIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~---------si 398 (599)
..+++|..++.+.-+.+||+||.|.+++.| .++ +||+. .| +++| ++|+|++++.|+.++.|.+ +.
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~ 227 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVIS 227 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEE
Confidence 456777777777777777777777777777 466 57775 56 4667 6788888888888888533 56
Q ss_pred ECCCCEECCCCEECCCCEECCCCCcC
Q 007537 399 VCDGVIMKAGAVLKPGVVLSFKPTVH 424 (599)
Q Consensus 399 I~~~~~Ig~~~~I~~g~vig~~~~~~ 424 (599)
||++|.||.+|.| |..||.++.++
T Consensus 228 IGe~~~IGagA~I--GI~IGd~~VVG 251 (319)
T TIGR03535 228 IGERCLLGANSGL--GISLGDDCVVE 251 (319)
T ss_pred ECCCcEECCCCEE--CeEECCCCEEC
Confidence 6777777776665 45555555544
No 224
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.49 E-value=6.9e-07 Score=95.75 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceE
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i 105 (599)
+.++.+||||||.|+||+. +|+|+|+.|+|||+|+++.+... +.+|+|+++... ...+ .. + + +
T Consensus 172 ~~~i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~--~~~~-~~--~----~--v 234 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQ--AEQY-RS--F----G--I 234 (369)
T ss_pred cCCceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCch--hhHH-hh--c----C--C
Confidence 3557899999999999973 99999999999999999999874 778888776542 2222 11 1 1 2
Q ss_pred EEEecCC-cCCHHHHHHHHHHhcccC-CCEEEEcCCe--echhhHHHHHHH
Q 007537 106 KTIESHN-IISAGDALRLIYEQNVIH-GDFVLISGDT--VSNMLLTQALQE 152 (599)
Q Consensus 106 ~~v~~~~-~~~~g~alr~~~~~~~i~-~dfllv~gD~--v~~~~l~~ll~~ 152 (599)
.+|.... ..|...++..... ... ..+++++||+ +....+..++..
T Consensus 235 ~~i~d~~~~~Gpl~gi~~al~--~~~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 235 PLITDSYLDIGPLGGLLSAQR--HHPDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred cEEeCCCCCCCcHHHHHHHHH--hCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 3333332 2353334443321 123 3489999999 555567777664
No 225
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.47 E-value=1e-06 Score=76.99 Aligned_cols=75 Identities=31% Similarity=0.373 Sum_probs=38.4
Q ss_pred cEECCCCEECCCCEEe---ceEECCCCEECCCcEEece---EECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECC
Q 007537 346 TVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS---YIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSF 419 (599)
Q Consensus 346 ~~Ig~~~~Ig~~~~I~---~svIG~~~~Ig~~~~I~~s---~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~ 419 (599)
+.||+++.|++++.|. ++.||++|.|+++|+|.++ .++.+..+...+....++|++++.|++++.|.++++|+.
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 3455555555555552 5778888888888888543 333333322223333444444444444444433444444
Q ss_pred C
Q 007537 420 K 420 (599)
Q Consensus 420 ~ 420 (599)
+
T Consensus 82 ~ 82 (109)
T cd04647 82 G 82 (109)
T ss_pred C
Confidence 3
No 226
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.47 E-value=4e-07 Score=90.32 Aligned_cols=92 Identities=21% Similarity=0.212 Sum_probs=72.2
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe---------ceEEC
Q 007537 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR---------HVIVC 400 (599)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~---------~siI~ 400 (599)
.+++|.+++.|...++||+|++|-+++.| -++.++.+|.|.-++++. ..+|+.|++||.|+.|. -.+|+
T Consensus 107 ~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Ig 186 (271)
T COG2171 107 EGVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIG 186 (271)
T ss_pred CceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEEC
Confidence 45889999999999999999999988888 588999999998888884 46899999999999882 36777
Q ss_pred CCCEECCCCEECCCCEECCCCCc
Q 007537 401 DGVIMKAGAVLKPGVVLSFKPTV 423 (599)
Q Consensus 401 ~~~~Ig~~~~I~~g~vig~~~~~ 423 (599)
++|.||+++.+..|+.||.++.+
T Consensus 187 dncliGAns~~veGV~vGdg~VV 209 (271)
T COG2171 187 DNCLIGANSEVVEGVIVGDGCVV 209 (271)
T ss_pred CccEeccccceEeeeEeCCCcEE
Confidence 77777777655445555555443
No 227
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.47 E-value=9.5e-07 Score=85.92 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=17.5
Q ss_pred ceEECCCcEECCCCEEC--CCcEECCCCEECCCCEE
Q 007537 327 GMYRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKI 360 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~--~~~~Ig~~~~Ig~~~~I 360 (599)
.+.++.++.|++++.|. +++.||++|.|++++.|
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I 100 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFI 100 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEE
Confidence 44455555555555554 24555555555555544
No 228
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.47 E-value=6e-07 Score=98.08 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=57.9
Q ss_pred ceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe
Q 007537 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR 395 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~ 395 (599)
+.+++.++.| .+|.|. +++||++|.|++++.|.+|+|+++|.||++|+|.+|+|+++++|+++++|.
T Consensus 327 ~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 327 NSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIG 393 (425)
T ss_pred eCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEEC
Confidence 5678888888 677884 799999999999999999999999999999999999999999888887653
No 229
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.42 E-value=1.7e-06 Score=91.47 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=75.7
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceE
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i 105 (599)
+..+.+||||||.++||+ .+|+|+|+.|+|||+|+++.|... +++|+|+++... .. +.. +. .+
T Consensus 158 ~~~i~~IILAGGkSsRMG-----~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~~---~~-----~v 220 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMG-----KDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GTP---LE-----NL 220 (346)
T ss_pred CCCceEEEEeccccccCC-----CCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--hh-hcc---cc-----CC
Confidence 448899999999999997 399999999999999999998875 788888876421 11 110 10 12
Q ss_pred EEEec-CCcCCHHHHHHHHHHhcccCCCEEEEcCCe--echhhHHHHHHHH
Q 007537 106 KTIES-HNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEH 153 (599)
Q Consensus 106 ~~v~~-~~~~~~g~alr~~~~~~~i~~dfllv~gD~--v~~~~l~~ll~~h 153 (599)
.++.. ....|...+++..... .-...+++++||+ +....+..+++.+
T Consensus 221 ~~I~D~~~~~GPlagI~aaL~~-~~~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 221 PTLPDRGESVGPISGILTALQS-YPGVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eEEeCCCCCCChHHHHHHHHHh-CCCCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 23332 2235777777755432 1124589999999 5555677777765
No 230
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=98.37 E-value=2.9e-06 Score=83.93 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=75.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHC-CCcEEEEEccC-chHHHHHHHHhcccCCCCCce
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~-gv~eV~vv~~~-~~~~i~~~l~~~~w~~~~~~~ 104 (599)
..+-+||+|+|+|+||.. ..||.+++++|+|||+|+|+.|... .+++|+|++.. ....+..+.... .+-.
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~-----~~~~ 74 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLS-----ADKR 74 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhc-----cCCe
Confidence 467899999999999997 8999999999999999999999998 57999999986 344555555310 1224
Q ss_pred EEEEecCCc--CCHHHHHHHHHHhcccCCCEEEEcCCe---echhhHHHHHH
Q 007537 105 VKTIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDT---VSNMLLTQALQ 151 (599)
Q Consensus 105 i~~v~~~~~--~~~g~alr~~~~~~~i~~dfllv~gD~---v~~~~l~~ll~ 151 (599)
+.+|..-.. .+.-.+|..+.. -..++++++==. ++.-.+.++++
T Consensus 75 v~~v~GG~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~ 123 (230)
T COG1211 75 VEVVKGGATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIE 123 (230)
T ss_pred EEEecCCccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHH
Confidence 555543221 233333332211 124466665322 45556777774
No 231
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.37 E-value=1.8e-06 Score=82.13 Aligned_cols=79 Identities=28% Similarity=0.363 Sum_probs=43.0
Q ss_pred CcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEec---------eEECCCCEECCCcEEeceEECCC
Q 007537 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCELRHVIVCDG 402 (599)
Q Consensus 333 ~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I~~siI~~~ 402 (599)
++.|+++|+||++.+|..+. +.+| +.++||++|.|..+++|.+ -.|++||.||.|+.| +|+
T Consensus 67 gieIhp~A~IG~g~fIdHg~----GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkI----LG~- 137 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGT----GVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKI----LGN- 137 (194)
T ss_pred ceeeCCCCeECCceEEcCCc----eEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEE----Ecc-
Confidence 34455555555555554432 2333 2446666666666666643 267778888887764 222
Q ss_pred CEECCCCEECCCCEECCC
Q 007537 403 VIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 403 ~~Ig~~~~I~~g~vig~~ 420 (599)
..||++++|++|+||-..
T Consensus 138 I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 138 IEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred eEECCCCEECCCceEccC
Confidence 444555555555554443
No 232
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.35 E-value=5.4e-07 Score=80.34 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=65.5
Q ss_pred ECCCcEECCCCEECCCCEEeceEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEeceEECCCCEECCC
Q 007537 342 VGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-------------GSYIWDNVIIEDGCELRHVIVCDGVIMKAG 408 (599)
Q Consensus 342 I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~-------------~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~ 408 (599)
+.+.++|.+++.|. .-+.+..||+.|+++.++.|. ...|+++|.|+++|++.-+.||.-+.+|++
T Consensus 36 lnGKtIv~~g~iIR--GDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkn 113 (184)
T KOG3121|consen 36 LNGKTIVEEGVIIR--GDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKN 113 (184)
T ss_pred EcCcEEEeeCcEEe--cccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccc
Confidence 34455555555553 123477888999999888886 357999999999999999999999999999
Q ss_pred CEECCCCEECCCCCcCC
Q 007537 409 AVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 409 ~~I~~g~vig~~~~~~~ 425 (599)
++|+.+||+-.-..+.+
T Consensus 114 aviGrrCVlkdCc~ild 130 (184)
T KOG3121|consen 114 AVIGRRCVLKDCCRILD 130 (184)
T ss_pred eeEcCceEhhhheeccC
Confidence 99999999988887765
No 233
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.32 E-value=1.2e-05 Score=88.07 Aligned_cols=166 Identities=15% Similarity=0.268 Sum_probs=97.4
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeC---CcchHHHHHHHHHHC------------C-CcEEEEEcc-CchHHH
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA------------G-VAEVFVFCC-AHSKQV 88 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~---n~PlI~y~Le~L~~~------------g-v~eV~vv~~-~~~~~i 88 (599)
+-++.+||||||.||||+ ...||+|+||+ |+||++++++.+... + .-.++|+++ +..+.+
T Consensus 104 ~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 104 KGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred cCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 446889999999999997 48899999994 899999999999875 1 124566665 557889
Q ss_pred HHHHHhcccCCCCCceEEEEec----------------------CCcCCHHHHHHHHHHhcccC-----C-C-EEEEcCC
Q 007537 89 IDYLENSEWFSQPNFTVKTIES----------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGD 139 (599)
Q Consensus 89 ~~~l~~~~w~~~~~~~i~~v~~----------------------~~~~~~g~alr~~~~~~~i~-----~-d-fllv~gD 139 (599)
++|+.+..|.....-.|.++.+ ..+.|.|+..+.+....++. + . +.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 9999875443211112221111 12357888877765544442 2 2 5666677
Q ss_pred ee-chhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCC
Q 007537 140 TV-SNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (599)
Q Consensus 140 ~v-~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~ 207 (599)
.+ ...---.++-.+..++ ...+++.+++. .+. .+-| +++.....-.++.|.|.++
T Consensus 261 N~L~k~~DP~flG~~~~~~---~~~~~~kvvk~-~~~-----EkvG----~~~~~~g~~~vvEYsEi~~ 316 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFP---AHDVLNKCVKR-EDD-----ESVG----VFCLKDYEWQVVEYTEINE 316 (482)
T ss_pred cccccccCHHHhHHHHHCC---chhheeeeecC-CCC-----Ccee----EEEEeCCcccEEEEeccCh
Confidence 74 3232233444444432 11344444433 221 2333 4443211225778877653
No 234
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=1.7e-06 Score=90.83 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=55.8
Q ss_pred CCcEECCCCEECC---CcEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEece
Q 007537 332 LEIEQSRSAQVGS---FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHV 397 (599)
Q Consensus 332 ~~~~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~s 397 (599)
.++.++.+|.|.+ +++|+.+++|+.+++|.+|+|..+|.||+||+|.+++|-.||.|++|++|.+.
T Consensus 295 ~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 295 SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 3445555555543 78999999999999999999999999999999999999999999999997543
No 235
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.26 E-value=3.2e-06 Score=80.40 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=56.9
Q ss_pred cceEECCCcEECC--CCEECCCcEECCCCEECCCCEEe---------ceEECCCCEECCCcEE-eceEECCCCEECCCcE
Q 007537 326 RGMYRALEIEQSR--SAQVGSFTVIGYGTKIGSNSKIS---------DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCE 393 (599)
Q Consensus 326 ~~~~~~~~~~i~~--~~~I~~~~~Ig~~~~Ig~~~~I~---------~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~ 393 (599)
+...+|++..|.. +.+|++.+.||++|.|..+++|+ +=.||+++.||.|+.| .+-.|++|+.||.||+
T Consensus 72 p~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sV 151 (194)
T COG1045 72 PGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSV 151 (194)
T ss_pred CCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCce
Confidence 3444555555533 24556666666666666666663 2379999999999998 7888999999999888
Q ss_pred EeceEECCCCEECCCCEE
Q 007537 394 LRHVIVCDGVIMKAGAVL 411 (599)
Q Consensus 394 I~~siI~~~~~Ig~~~~I 411 (599)
+...+-.+-+++|--+++
T Consensus 152 VlkdVP~~~tvvGvPAri 169 (194)
T COG1045 152 VLKDVPPNATVVGVPARV 169 (194)
T ss_pred EccCCCCCceEecCcceE
Confidence 876665544444544433
No 236
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.26 E-value=7e-06 Score=76.11 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=14.9
Q ss_pred ECCCcEECC-CCEECC-CcEECCCCEECCCCEE
Q 007537 330 RALEIEQSR-SAQVGS-FTVIGYGTKIGSNSKI 360 (599)
Q Consensus 330 ~~~~~~i~~-~~~I~~-~~~Ig~~~~Ig~~~~I 360 (599)
+|..+.|+. .+.++. .+.||++|.|++++.|
T Consensus 4 iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i 36 (145)
T cd03349 4 VGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKI 36 (145)
T ss_pred EeCceeeCCCCceEeCCCeEECCCCEECCCCEE
Confidence 444444444 333332 4555555555555555
No 237
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.19 E-value=8.5e-06 Score=75.56 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=8.5
Q ss_pred CCEECCCcEECCCCEECCC
Q 007537 339 SAQVGSFTVIGYGTKIGSN 357 (599)
Q Consensus 339 ~~~I~~~~~Ig~~~~Ig~~ 357 (599)
.+.||.+|.|++++.|..+
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 3444444444444444433
No 238
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.99 E-value=5.1e-06 Score=74.86 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=66.6
Q ss_pred eEECCCcEECCCCEECCCcEECCCCEECCCCEE----eceEECCCCEECCCcEEec--------------eEECCCCEEC
Q 007537 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI----SDSVIGEGCTIGSNVLIEG--------------SYIWDNVIIE 389 (599)
Q Consensus 328 ~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I----~~svIG~~~~Ig~~~~I~~--------------s~I~~~v~Ig 389 (599)
+-+.+++++-..+.|.+++.|+++|+|.|.+++ +..+||+||.|.+.+.|.+ -+|+.+.+..
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 445666666666678889999999999999887 4789999999999998854 3577777666
Q ss_pred CCcEEe------ceEECCCCEECCCCEECCCCEECCCCCc
Q 007537 390 DGCELR------HVIVCDGVIMKAGAVLKPGVVLSFKPTV 423 (599)
Q Consensus 390 ~~~~I~------~siI~~~~~Ig~~~~I~~g~vig~~~~~ 423 (599)
-+|..+ +-+|+..+.+|+|+.+..||+||.+.++
T Consensus 89 Vgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v 128 (190)
T KOG4042|consen 89 VGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTV 128 (190)
T ss_pred eechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEE
Confidence 666653 3344444445555555555555555443
No 239
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.81 E-value=0.00013 Score=70.49 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=7.9
Q ss_pred ceEECCCCEECCCcEE
Q 007537 362 DSVIGEGCTIGSNVLI 377 (599)
Q Consensus 362 ~svIG~~~~Ig~~~~I 377 (599)
+..||.++.|+++|.|
T Consensus 87 ~i~ig~~~~i~~~v~i 102 (190)
T COG0110 87 GITIGDNVVVGPNVTI 102 (190)
T ss_pred CeEECCCceECCCcEE
Confidence 3345555555555555
No 240
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=97.79 E-value=0.00054 Score=67.48 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=73.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCC-CcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEe
Q 007537 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (599)
Q Consensus 31 aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~g-v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~ 109 (599)
|||.|=+.++|+- -|.|.||+|+|||+|+++.+.+++ +++|+|.+.. +.+.+.+.+. +..+.+..
T Consensus 2 aiIpAR~gS~rlp------~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~------g~~v~~~~ 67 (217)
T PF02348_consen 2 AIIPARGGSKRLP------GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY------GAKVIFRR 67 (217)
T ss_dssp EEEEE-SSSSSST------TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT------TSEEEE--
T ss_pred EEEecCCCCCCCC------cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc------CCeeEEcC
Confidence 7899988888887 599999999999999999999985 7888777654 5566666542 34554444
Q ss_pred cCCcCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHhh
Q 007537 110 SHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERK 157 (599)
Q Consensus 110 ~~~~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~~ 157 (599)
.....++......+.....-..+ ++.+.||. +....+..+++.+++..
T Consensus 68 ~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~ 118 (217)
T PF02348_consen 68 GSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREAN 118 (217)
T ss_dssp TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHST
T ss_pred hhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCc
Confidence 33333333222222111111223 67788898 55668899999998864
No 241
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.79 E-value=3.7e-05 Score=74.11 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=42.2
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCcEEece---------EECCCCEECCCcEEeceEECCCCE
Q 007537 335 EQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGS---------YIWDNVIIEDGCELRHVIVCDGVI 404 (599)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~svIG~~~~Ig~~~~I~~s---------~I~~~v~Ig~~~~I~~siI~~~~~ 404 (599)
-|++.+.||.+..+...+ +++|+ ..+||.+|.|..++.+.++ .|++||.||.++. |-.|+.
T Consensus 150 dihpaa~ig~gilldhat----gvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvt-----ILgnV~ 220 (269)
T KOG4750|consen 150 DIHPAAKIGKGILLDHAT----GVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVT-----ILGNVT 220 (269)
T ss_pred cccchhhcccceeecccc----ceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccE-----EeCCee
Confidence 445555555554443322 23332 3355666666666666432 5777777777765 445556
Q ss_pred ECCCCEECCCCEECCC
Q 007537 405 MKAGAVLKPGVVLSFK 420 (599)
Q Consensus 405 Ig~~~~I~~g~vig~~ 420 (599)
||+|++|+.|++|-..
T Consensus 221 IGegavIaAGsvV~kD 236 (269)
T KOG4750|consen 221 IGEGAVIAAGSVVLKD 236 (269)
T ss_pred ECCCcEEeccceEEec
Confidence 6666666666655544
No 242
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.77 E-value=9.5e-05 Score=85.43 Aligned_cols=57 Identities=33% Similarity=0.476 Sum_probs=27.0
Q ss_pred eEECCCCEECCCcEEec------eEECCCCEECCCcEEe-ceEECCCCEECCCCEECCCCEECC
Q 007537 363 SVIGEGCTIGSNVLIEG------SYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSF 419 (599)
Q Consensus 363 svIG~~~~Ig~~~~I~~------s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~~g~vig~ 419 (599)
+.||++|.|+++|.|.. ....++++||++|.|. +|+|..+++||+++.|++++++-.
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~ 680 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMK 680 (695)
T ss_pred eEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Confidence 36666666666666632 1223344444444432 333444444444444444444433
No 243
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.77 E-value=7.8e-05 Score=86.14 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=8.1
Q ss_pred cEECCCCEECCCCEE
Q 007537 346 TVIGYGTKIGSNSKI 360 (599)
Q Consensus 346 ~~Ig~~~~Ig~~~~I 360 (599)
+.||++|.|++++.+
T Consensus 132 i~IG~~~~I~~~v~l 146 (695)
T TIGR02353 132 LTIGAGTIVRKEVML 146 (695)
T ss_pred eEECCCCEECCCCEE
Confidence 345555555555555
No 244
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.76 E-value=0.00014 Score=70.26 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=16.7
Q ss_pred ceEECCCcEECCCCEE--CCCcEECCCCEECCCCEE
Q 007537 327 GMYRALEIEQSRSAQV--GSFTVIGYGTKIGSNSKI 360 (599)
Q Consensus 327 ~~~~~~~~~i~~~~~I--~~~~~Ig~~~~Ig~~~~I 360 (599)
.+.++..+.+...+.+ ..++.||.++.|++++.|
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i 102 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTI 102 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEE
Confidence 4445555555554442 334445555555555554
No 245
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.64 E-value=0.014 Score=63.84 Aligned_cols=162 Identities=13% Similarity=0.197 Sum_probs=96.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeC-CcchHHHHHHHHHHC----CCc-EEEEEccCc-hHHHHHHHHhcccCC
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEWFS 99 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~-n~PlI~y~Le~L~~~----gv~-eV~vv~~~~-~~~i~~~l~~~~w~~ 99 (599)
.++-+|+||||-||||+- ..||.|+|+. |+++++.+++.+... |+. ..+|.++.. .+..++||++..+.
T Consensus 78 ~k~avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~- 153 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNS- 153 (469)
T ss_pred hcEEEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCC-
Confidence 567899999999999995 7899999996 599999999988664 433 346666654 56789999874432
Q ss_pred CCCceEEEEec------------------------CCcCCHHHHHHHHHHhcccC-----C-C-EEEEcCCeechhhHHH
Q 007537 100 QPNFTVKTIES------------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQ 148 (599)
Q Consensus 100 ~~~~~i~~v~~------------------------~~~~~~g~alr~~~~~~~i~-----~-d-fllv~gD~v~~~~l~~ 148 (599)
+..+.++.| -.+-|-|+..+.+....++. + . +.+.+.|.+...-=-.
T Consensus 154 --~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 154 --NIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred --ccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 122222211 12457788777665444432 2 2 5667788854332123
Q ss_pred HHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCC
Q 007537 149 ALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (599)
Q Consensus 149 ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~ 207 (599)
++..|... ++.++|-+.+.... ..+-| +++.-...-+|+.|.+.|+
T Consensus 232 ~lg~~~~~-----~~e~~~ev~~Kt~~----d~kgG----~l~~~dgk~~lvEysqvp~ 277 (469)
T PLN02474 232 ILNHLIQN-----KNEYCMEVTPKTLA----DVKGG----TLISYEGKVQLLEIAQVPD 277 (469)
T ss_pred HHHHHHhc-----CCceEEEEeecCCC----CCCcc----EEEEECCEEEEEEEecCCH
Confidence 45555553 36666654432211 11223 3332211235778887764
No 246
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.59 E-value=7.7e-05 Score=67.36 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=72.2
Q ss_pred eeecceEECCCcEECCCCEEC---CCcEECCCCEECCCCEEec--------------eEECCCCEECCCcEEeceEECCC
Q 007537 323 LERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKISD--------------SVIGEGCTIGSNVLIEGSYIWDN 385 (599)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~~--------------svIG~~~~Ig~~~~I~~s~I~~~ 385 (599)
-.|+.+.+++++++++.+.+. +..+||+++.|.+.+.|.| -+||.+.+..-+|.....+++++
T Consensus 22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~ 101 (190)
T KOG4042|consen 22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDR 101 (190)
T ss_pred ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCc
Confidence 346777788888888887773 3688999999988888754 35666666666666666678777
Q ss_pred CEECCCcEEeceEECCCCEECCCCEECCCCEECCCCCcCC
Q 007537 386 VIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKPTVHD 425 (599)
Q Consensus 386 v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~~~~~~ 425 (599)
.+|+..|. +|+||.+..+|.|+++|.|-....+++
T Consensus 102 NVieskay-----vg~gv~vssgC~vGA~c~v~~~q~lpe 136 (190)
T KOG4042|consen 102 NVIESKAY-----VGDGVSVSSGCSVGAKCTVFSHQNLPE 136 (190)
T ss_pred ceEeeeeE-----ecCCcEEcCCceeccceEEecccccCC
Confidence 77776655 788888888888888888777766553
No 247
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00021 Score=69.06 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=30.6
Q ss_pred cEECCCCEECCCcEECCCCEECCCC-EE--eceEECCCCEECCCcEE-eceEECCCCEECCCcEEe
Q 007537 334 IEQSRSAQVGSFTVIGYGTKIGSNS-KI--SDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR 395 (599)
Q Consensus 334 ~~i~~~~~I~~~~~Ig~~~~Ig~~~-~I--~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~ 395 (599)
++|+++++||.++.|..++.+|..- -. +.=.||+||.||.++.| .|..|+.|++|+.|+++.
T Consensus 169 vvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~ 234 (269)
T KOG4750|consen 169 VVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVL 234 (269)
T ss_pred eeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEE
Confidence 3444444444444444444443211 11 12367777777777665 455555555555555443
No 248
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.32 E-value=0.013 Score=56.94 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=119.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEE
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~ 106 (599)
++.-|||+|-|.++|.. -|-+.+++|+|||-|+++.+.+++.-+-+|+.+ ..+.|.+.-++ + |.++.
T Consensus 2 ~~~iAiIpAR~gSKgI~------~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSs-Ds~~Il~~A~~--y----gak~~ 68 (228)
T COG1083 2 MKNIAIIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISS-DSEEILEEAKK--Y----GAKVF 68 (228)
T ss_pred cceEEEEeccCCCCcCC------ccchHHhCCcchHHHHHHHHhcCCccceEEEcC-CcHHHHHHHHH--h----Ccccc
Confidence 35568999999888876 599999999999999999999998544444444 34444444332 1 22222
Q ss_pred EEecCC-----cCCHHHHHHHHHHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHhhccCCCceEEEEEeecCCCCCc
Q 007537 107 TIESHN-----IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPIT 178 (599)
Q Consensus 107 ~v~~~~-----~~~~g~alr~~~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~ 178 (599)
+..+. ..++-+++.....-..+..+ ++++.+-. ....+++++++.+.+.. .+++++.+-.+..|
T Consensus 69 -~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~---~~sl~sa~e~e~~p---- 140 (228)
T COG1083 69 -LKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQ---YDSLFSAVECEHHP---- 140 (228)
T ss_pred -ccCChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCC---CcceEEEeecccch----
Confidence 11111 12222333322222223344 66665544 77889999999998864 45666555444322
Q ss_pred cCcccCCCceEEEEeCCCCeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccccchhhHH
Q 007537 179 HQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLR 258 (599)
Q Consensus 179 ~~~r~g~~~~vv~~d~~~~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dnfd~q~ir 258 (599)
.+. +.. +.|.+..+.+.++.....-.+++.. . -+.-|||.+.+++. ++
T Consensus 141 --~k~------f~~--~~~~~~~~~~~~~~~~rrQ~Lpk~Y-~-----------~NgaiYi~~~~~l~---e~------- 188 (228)
T COG1083 141 --YKA------FSL--NNGEVKPVNEDPDFETRRQDLPKAY-R-----------ENGAIYINKKDALL---EN------- 188 (228)
T ss_pred --HHH------HHh--cCCceeecccCCccccccccchhhh-h-----------hcCcEEEehHHHHh---hc-------
Confidence 121 111 2356666666554222222333321 1 12447888765431 11
Q ss_pred HhhhhccccccccCCeeEEEeccccceeeccChhHHHHHHHHh
Q 007537 259 RHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (599)
Q Consensus 259 ~dfv~~vl~~~~~g~~I~~~~~~~~y~~~V~s~~sY~~as~di 301 (599)
++ ..+.....|+++..-..+|++.+++..+..-+
T Consensus 189 -~~--------~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~ 222 (228)
T COG1083 189 -DC--------FFIPNTILYEMPEDESIDIDTELDLEIAENLI 222 (228)
T ss_pred -Cc--------eecCCceEEEcCcccccccccHHhHHHHHHHh
Confidence 10 12344556777755677999999888775544
No 249
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.29 E-value=0.00017 Score=49.87 Aligned_cols=31 Identities=48% Similarity=0.821 Sum_probs=13.1
Q ss_pred EECCCCEECCCCEE-eceEECCCCEECCCcEE
Q 007537 347 VIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLI 377 (599)
Q Consensus 347 ~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I 377 (599)
.||+++.|++++.| .+++||++|.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 34444444444433 34444444444444444
No 250
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.24 E-value=0.00039 Score=47.63 Aligned_cols=14 Identities=50% Similarity=0.956 Sum_probs=4.8
Q ss_pred EECCCCEECCCcEE
Q 007537 364 VIGEGCTIGSNVLI 377 (599)
Q Consensus 364 vIG~~~~Ig~~~~I 377 (599)
.||++|.||.++.|
T Consensus 3 ~IG~~~~ig~~~~i 16 (34)
T PF14602_consen 3 TIGDNCFIGANSTI 16 (34)
T ss_dssp EE-TTEEE-TT-EE
T ss_pred EECCCEEECccccc
Confidence 34444444444443
No 251
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.19 E-value=0.01 Score=61.58 Aligned_cols=161 Identities=16% Similarity=0.235 Sum_probs=97.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeC-CcchHHHHHHHHHHC----CCc-EEEEEccCc-hHHHHHHHHhcccCC
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEWFS 99 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~-n~PlI~y~Le~L~~~----gv~-eV~vv~~~~-~~~i~~~l~~~~w~~ 99 (599)
.++-+|+||||-||||+- ..||.|+||. +++++++.++.+... |+. ..+|.++.. .+.+++||++..+.
T Consensus 2 ~kvavl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~- 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGV- 77 (300)
T ss_pred CcEEEEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCC-
Confidence 357789999999999974 7899999996 599999999998764 432 456677755 56799999874331
Q ss_pred CCCceEEEEe------------------------cCCcCCHHHHHHHHHHhcccC-----C-C-EEEEcCCeechhhHHH
Q 007537 100 QPNFTVKTIE------------------------SHNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQ 148 (599)
Q Consensus 100 ~~~~~i~~v~------------------------~~~~~~~g~alr~~~~~~~i~-----~-d-fllv~gD~v~~~~l~~ 148 (599)
+..+.++. ...+.|-|+..+.+.....+. + . +.+.+.|.+...-=-.
T Consensus 78 --~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~ 155 (300)
T cd00897 78 --NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLR 155 (300)
T ss_pred --ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHH
Confidence 01111111 113457788777665544442 2 2 6777889865432123
Q ss_pred HHHHHHHhhccCCCceEEEEE-eecCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCC
Q 007537 149 ALQEHKERKKKDNNAVMTMII-KKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (599)
Q Consensus 149 ll~~h~~~~~~d~~a~mT~~~-~~~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~ 207 (599)
++..|... ++.+++-+ .+..+. .+-| +++.....-+|+.|.+.|+
T Consensus 156 ~lg~~~~~-----~~~~~~evv~Kt~~d-----ek~G----~l~~~~g~~~vvEyse~p~ 201 (300)
T cd00897 156 ILNHMVDN-----KAEYIMEVTDKTRAD-----VKGG----TLIQYEGKLRLLEIAQVPK 201 (300)
T ss_pred HHHHHHhc-----CCceEEEEeecCCCC-----Cccc----EEEEECCEEEEEEeccCCH
Confidence 45555553 46666633 333322 2333 4443211235777777664
No 252
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.04 E-value=0.0022 Score=62.42 Aligned_cols=88 Identities=10% Similarity=0.208 Sum_probs=67.6
Q ss_pred cceEECCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCC
Q 007537 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR-HVIVCDGV 403 (599)
Q Consensus 326 ~~~~~~~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~-~siI~~~~ 403 (599)
..+....++.|++++.+ .-.++|....+|+++.|...+++.+|.|+..|.+ .|.....++.||+++.|+ +-++...-
T Consensus 15 ~~ivv~gdViIG~nS~l-~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdL 93 (277)
T COG4801 15 AIIVVKGDVIIGKNSML-KYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDL 93 (277)
T ss_pred eeEEEeccEEEccccee-eeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccc
Confidence 45566677788888877 3457888888888888887788888888888888 677888888888888886 45566667
Q ss_pred EECCCCEECCC
Q 007537 404 IMKAGAVLKPG 414 (599)
Q Consensus 404 ~Ig~~~~I~~g 414 (599)
-||+++.|+.|
T Consensus 94 dig~dV~Iegg 104 (277)
T COG4801 94 DIGADVIIEGG 104 (277)
T ss_pred ccccceEEecC
Confidence 77777777744
No 253
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.99 E-value=0.00079 Score=46.14 Aligned_cols=15 Identities=47% Similarity=0.862 Sum_probs=5.9
Q ss_pred eEECCCCEECCCcEE
Q 007537 363 SVIGEGCTIGSNVLI 377 (599)
Q Consensus 363 svIG~~~~Ig~~~~I 377 (599)
..||++|.|++|+.|
T Consensus 18 i~igd~~~i~~g~~I 32 (34)
T PF14602_consen 18 ITIGDGVIIGAGVVI 32 (34)
T ss_dssp SEE-TTEEE-TTEEE
T ss_pred CEEcCCCEECCCCEE
Confidence 444444444444443
No 254
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=96.94 E-value=0.019 Score=63.25 Aligned_cols=164 Identities=11% Similarity=0.189 Sum_probs=97.5
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeC---CcchHHHHHHHHHHC--------------CC-cEEEEEccCc-hH
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------------GV-AEVFVFCCAH-SK 86 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~---n~PlI~y~Le~L~~~--------------gv-~eV~vv~~~~-~~ 86 (599)
+.++-+|+||||-||||+- ..||.|+||+ ++++++...+.+... ++ =..+|.++.. .+
T Consensus 114 ~gkvavvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred cCCEEEEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 4577889999999999985 8899999886 799999999987542 11 1347777755 57
Q ss_pred HHHHHHHhcccCCCCCceEEEEec---------------------CCcCCHHHHHHHHHHhcccC-----C-C-EEEEcC
Q 007537 87 QVIDYLENSEWFSQPNFTVKTIES---------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISG 138 (599)
Q Consensus 87 ~i~~~l~~~~w~~~~~~~i~~v~~---------------------~~~~~~g~alr~~~~~~~i~-----~-d-fllv~g 138 (599)
..++||++..+.....-.|.++.+ ..+.|.|+..+.+....++. + . +.+.+.
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 270 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGV 270 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence 899999875432211112333222 23468888888776555542 2 2 455566
Q ss_pred Cee-chhhHHHHHHHHHHhhccCCCceEEEE-EeecCCCCCccCcccCCCceEEEEeCCCC--eEEEeeccC
Q 007537 139 DTV-SNMLLTQALQEHKERKKKDNNAVMTMI-IKKSKPSPITHQSRLGTDELFMAIDPNTK--QLLYYEDKA 206 (599)
Q Consensus 139 D~v-~~~~l~~ll~~h~~~~~~d~~a~mT~~-~~~~~~~~~~~~~r~g~~~~vv~~d~~~~--rvl~~~ekp 206 (599)
|.+ ...---.++-.+..+ ++.+.+- +++..+. .+-| +++....+| .|+.|.|.+
T Consensus 271 DN~L~~~~DP~flG~~~~~-----~~d~~~kVv~K~~~~-----EkvG----~i~~~~~~g~~~vvEYsEl~ 328 (493)
T PLN02435 271 DNALVRVADPTFLGYFIDK-----GVASAAKVVRKAYPQ-----EKVG----VFVRRGKGGPLTVVEYSELD 328 (493)
T ss_pred ccccccccCHHHHHHHHhc-----CCceEEEeeecCCCC-----Ccee----EEEEecCCCCEEEEEeccCC
Confidence 763 333223445555554 3555553 3332222 1233 555421233 477777654
No 255
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.88 E-value=0.0028 Score=60.59 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCcccceeCC--cchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHH--H
Q 007537 49 RPKVLLPLVN--VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLI--Y 124 (599)
Q Consensus 49 ~PK~LLpi~n--~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~--~ 124 (599)
.+|+|+++.| +|||+|+++.+. ..+.+|+|+++.+. .+ .. +.+.++. +...+.|...... .
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~~--------~~~~~i~-d~~~g~gpl~~~~~gl 67 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----PE--------LPAPVLR-DELRGLGPLPATGRGL 67 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc-cc----cc--------CCCCEec-cCCCCCCcHHHHHHHH
Confidence 4899999999 999999999876 45899999987642 11 11 1122332 2222333322211 1
Q ss_pred -HhcccCCC-EEEEcCCe--echhhHHHHHHHHH
Q 007537 125 -EQNVIHGD-FVLISGDT--VSNMLLTQALQEHK 154 (599)
Q Consensus 125 -~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~ 154 (599)
....-..+ ++|++||+ |....+..+++.++
T Consensus 68 ~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 68 RAAAEAGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred HHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 10011234 89999999 55566777777554
No 256
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.87 E-value=0.0026 Score=61.90 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=27.9
Q ss_pred CCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECCCCEEC
Q 007537 355 GSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLK 412 (599)
Q Consensus 355 g~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siI~~~~~Ig~~~~I~ 412 (599)
|+++.+.-.++|+.+.+|+++.|.+.++..++.|+..|.+. +.++..++.||+++.|+
T Consensus 26 G~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~ 84 (277)
T COG4801 26 GKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIK 84 (277)
T ss_pred cccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceee
Confidence 33333434455555555555555555555555555555543 34444444444444443
No 257
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=96.74 E-value=0.007 Score=71.45 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=60.2
Q ss_pred EEEEeCCC-CeEEEeeccCCCCCCceEeeHHhHhcCCceEEEcCCccceeEeeChhhHhhhccc-cc-------hhhHHH
Q 007537 189 FMAIDPNT-KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN-FD-------YQHLRR 259 (599)
Q Consensus 189 vv~~d~~~-~rvl~~~ekp~~~~~~~~i~~~~~~~~~~~~ir~dL~d~gIyicsp~vl~lf~dn-fd-------~q~ir~ 259 (599)
||+.|.++ ++|-++-.||... .+ ..+.. -..-|+|+|+|+++....+.+... +. +-++-.
T Consensus 195 Vfv~~~~~~~~~~~~LqKps~e--el---~a~~~------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~ 263 (974)
T PRK13412 195 VFVSSRKSPERLDFMLQKPSLE--EL---GGLSK------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYS 263 (974)
T ss_pred EEEeCCCChHHHHHHhcCCCHH--HH---Hhhhc------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHH
Confidence 88888752 6777788887521 11 11222 124478999999999887754421 10 113345
Q ss_pred hhhhcc-----cc-ccccCCeeEEEeccccceeeccChhHHHH
Q 007537 260 HFVKGL-----LL-DDIMGYKIFTHEIHSSYAARIDNYRSYDI 296 (599)
Q Consensus 260 dfv~~v-----l~-~~~~g~~I~~~~~~~~y~~~V~s~~sY~~ 296 (599)
||+.-+ +. .++++.++....++++-..-++|-+.|..
T Consensus 264 Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~ 306 (974)
T PRK13412 264 DFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELIS 306 (974)
T ss_pred HHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhc
Confidence 777543 22 25667777777787777778888887774
No 258
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=96.53 E-value=0.041 Score=53.71 Aligned_cols=110 Identities=24% Similarity=0.386 Sum_probs=73.5
Q ss_pred EEEEEeCCC-CCCCCCCCCCCCcccceeCCcchHHHHHHHHHHCC-CcEEEEEccCc--hHHHHHHHHhcccCCCCCceE
Q 007537 30 QAILLADSF-TTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAH--SKQVIDYLENSEWFSQPNFTV 105 (599)
Q Consensus 30 ~aVILA~g~-gtR~~PlT~~~PK~LLpi~n~PlI~y~Le~L~~~g-v~eV~vv~~~~--~~~i~~~l~~~~w~~~~~~~i 105 (599)
-++|+.+-. +|||. -|.|+||++.|||+|+|+++..+. ..+++|.++.. .+.++.+.... |+.+
T Consensus 4 I~~IiQARmgStRLp------gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~------G~~v 71 (241)
T COG1861 4 ILVIIQARMGSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH------GFYV 71 (241)
T ss_pred EEEEeeecccCccCC------cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc------CeeE
Confidence 345555544 46665 699999999999999999999985 67888888754 35677777651 3332
Q ss_pred EEEecCCcCCHHHHHHHH-HHhcccCCC-EEEEcCCe--echhhHHHHHHHHHHhh
Q 007537 106 KTIESHNIISAGDALRLI-YEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERK 157 (599)
Q Consensus 106 ~~v~~~~~~~~g~alr~~-~~~~~i~~d-fllv~gD~--v~~~~l~~ll~~h~~~~ 157 (599)
+. .+..+.|..+ .+......+ ++=+.||- +...-+..+++.|-+..
T Consensus 72 --fr----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~g 121 (241)
T COG1861 72 --FR----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKG 121 (241)
T ss_pred --ec----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcC
Confidence 22 2345566544 233444556 45589999 44455678888888753
No 259
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.51 E-value=0.089 Score=59.74 Aligned_cols=137 Identities=15% Similarity=0.240 Sum_probs=87.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeC---CcchHHHHHHHHHHC-----------CC-cEEEEEccCc-hHHHHH
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA-----------GV-AEVFVFCCAH-SKQVID 90 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~---n~PlI~y~Le~L~~~-----------gv-~eV~vv~~~~-~~~i~~ 90 (599)
.++-+|+||||-||||+- ..||.+||++ |+++++..++.+... ++ -..+|.++.. .+..++
T Consensus 127 ~kvavllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~ 203 (615)
T PLN02830 127 GNAAFVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLK 203 (615)
T ss_pred CcEEEEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHH
Confidence 467789999999999985 7899999983 799999999998664 11 2467777765 578999
Q ss_pred HHHhcccCCCCCceEEEEe----------------c--------CCcCCHHHHHHHHHHhcccC-----C-CE-EEEcCC
Q 007537 91 YLENSEWFSQPNFTVKTIE----------------S--------HNIISAGDALRLIYEQNVIH-----G-DF-VLISGD 139 (599)
Q Consensus 91 ~l~~~~w~~~~~~~i~~v~----------------~--------~~~~~~g~alr~~~~~~~i~-----~-df-llv~gD 139 (599)
||++..|.....-.|.++. . ..+.|-|+..+.+....++. + .+ .+...|
T Consensus 204 ~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vD 283 (615)
T PLN02830 204 LLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDT 283 (615)
T ss_pred HHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEecc
Confidence 9998666422111122111 1 13457888888776655542 2 24 445555
Q ss_pred e-echhhHHHHHHHHHHhhccCCCceEEEEEee
Q 007537 140 T-VSNMLLTQALQEHKERKKKDNNAVMTMIIKK 171 (599)
Q Consensus 140 ~-v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~ 171 (599)
. +...-.-.++-.+..+ ++.|.+.+.+
T Consensus 284 N~L~~~Adp~flG~~~~~-----~~d~~~kvv~ 311 (615)
T PLN02830 284 NGLVFKAIPAALGVSATK-----GFDMNSLAVP 311 (615)
T ss_pred chhhhcccHHHhHHHHhc-----CCceEEEEEE
Confidence 5 3323235566666654 3555554443
No 260
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.51 E-value=0.0082 Score=62.50 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=53.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCCccccee---CCcchHHHHHHHHHHCC--------C-cEEEEEccCc-hHHHHHHHHhcc
Q 007537 30 QAILLADSFTTKFRPITLERPKVLLPL---VNVPMINYTLAWLEAAG--------V-AEVFVFCCAH-SKQVIDYLENSE 96 (599)
Q Consensus 30 ~aVILA~g~gtR~~PlT~~~PK~LLpi---~n~PlI~y~Le~L~~~g--------v-~eV~vv~~~~-~~~i~~~l~~~~ 96 (599)
.+|+||||-||||+- ..||.++|+ -+++++++.++++.... + =..+|.++.. .+.+++++++..
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~ 78 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN 78 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC
Confidence 478999999999985 889999999 47999999999987642 1 2467778765 578999998866
Q ss_pred cC
Q 007537 97 WF 98 (599)
Q Consensus 97 w~ 98 (599)
|.
T Consensus 79 yF 80 (315)
T cd06424 79 YF 80 (315)
T ss_pred cc
Confidence 53
No 261
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.053 Score=58.67 Aligned_cols=164 Identities=15% Similarity=0.257 Sum_probs=95.1
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcccceeC-CcchHHHHHHHHHHC----CCc-EEEEEccCchHHHHHHHHhcccCC
Q 007537 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAHSKQVIDYLENSEWFS 99 (599)
Q Consensus 26 ~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~-n~PlI~y~Le~L~~~----gv~-eV~vv~~~~~~~i~~~l~~~~w~~ 99 (599)
..++.+|+||||.|+||+- ..||.|++|. |+++++.+.+.+..+ +++ ..++.++...++...|+....+..
T Consensus 103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~ 179 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFG 179 (472)
T ss_pred cCceEEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcC
Confidence 6678999999999999996 6899999999 899999999988765 432 355666655545555554432221
Q ss_pred CCCceEEE----------------Ee-------cCCcCCHHHHHHHHHHhcc----c-CC-C-EEEEcCCeech-hhHHH
Q 007537 100 QPNFTVKT----------------IE-------SHNIISAGDALRLIYEQNV----I-HG-D-FVLISGDTVSN-MLLTQ 148 (599)
Q Consensus 100 ~~~~~i~~----------------v~-------~~~~~~~g~alr~~~~~~~----i-~~-d-fllv~gD~v~~-~~l~~ 148 (599)
.....|.+ +. ...+.|.|+....+...+. + +| + +.|.+.|.+.- +|+ .
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~-~ 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL-K 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH-H
Confidence 10011111 11 1123466766555543222 2 23 3 56677888432 243 3
Q ss_pred HHHHHHHhhccCCCceEEEEEeecCCCCCccCcccCCCceEEE-EeCCCCeEEEeeccCC
Q 007537 149 ALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMA-IDPNTKQLLYYEDKAD 207 (599)
Q Consensus 149 ll~~h~~~~~~d~~a~mT~~~~~~~~~~~~~~~r~g~~~~vv~-~d~~~~rvl~~~ekp~ 207 (599)
++..|... ++..+|=+...... ..+-| +++ .|. .-||+.|.+.|+
T Consensus 259 ~lg~~~~~-----~~e~~~e~t~Kt~a----~ekvG----~Lv~~~g-~~rllEysev~~ 304 (472)
T COG4284 259 FLGFMAET-----NYEYLMETTDKTKA----DEKVG----ILVTYDG-KLRLLEYSEVPN 304 (472)
T ss_pred HHHHHHhc-----CcceeEEEeecccc----cccce----EEEEeCC-ceEEEEEecCCh
Confidence 44555543 35555544432110 11223 444 664 478999998875
No 262
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=96.02 E-value=0.2 Score=54.63 Aligned_cols=163 Identities=20% Similarity=0.306 Sum_probs=96.3
Q ss_pred cCCCcEEEEEeCCCCCCCCCCCCCCCcccceeC-CcchHHHHHHHHHHC----CCc-EEEEEccCc-hHHHHHHHHhccc
Q 007537 25 ARQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEW 97 (599)
Q Consensus 25 ~~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~-n~PlI~y~Le~L~~~----gv~-eV~vv~~~~-~~~i~~~l~~~~w 97 (599)
...++-+|+||||-||||+- ..||.|+||. ++.+++..++.+... |+. ..+|.++.. .+.+++|+++ .+
T Consensus 53 ~~~kvavl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yf 128 (420)
T PF01704_consen 53 ALGKVAVLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YF 128 (420)
T ss_dssp HTTCEEEEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GC
T ss_pred hhCCEEEEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hc
Confidence 35678899999999999985 7899999996 588999999988762 432 456667654 6789999987 32
Q ss_pred CCCCCceEEE----------------EecC-------C---cCCHHHHHHHHHHhccc-----CC-C-EEEEcCCeechh
Q 007537 98 FSQPNFTVKT----------------IESH-------N---IISAGDALRLIYEQNVI-----HG-D-FVLISGDTVSNM 144 (599)
Q Consensus 98 ~~~~~~~i~~----------------v~~~-------~---~~~~g~alr~~~~~~~i-----~~-d-fllv~gD~v~~~ 144 (599)
..... |.+ +..+ . +.|-|+..+.+...+++ ++ . +.+.+.|.+...
T Consensus 129 g~~~~--v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~ 206 (420)
T PF01704_consen 129 GLDVD--VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAV 206 (420)
T ss_dssp GSSCC--EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-T
T ss_pred CCCcc--eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccc
Confidence 22111 211 1111 1 34889888877655444 23 3 677788985544
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEEee-cCCCCCccCcccCCCceEEEEeCCCCeEEEeeccCC
Q 007537 145 LLTQALQEHKERKKKDNNAVMTMIIKK-SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (599)
Q Consensus 145 ~l~~ll~~h~~~~~~d~~a~mT~~~~~-~~~~~~~~~~r~g~~~~vv~~d~~~~rvl~~~ekp~ 207 (599)
-=-.++..+... ++.+.|-+.+ ..+. .+-| +++.....-+|+.|.+.|.
T Consensus 207 ~Dp~~lG~~~~~-----~~~~~~evv~Kt~~d-----ek~G----vl~~~~G~~~vvEysqip~ 256 (420)
T PF01704_consen 207 VDPVFLGYMIEK-----NADFGMEVVPKTSPD-----EKGG----VLCRYDGKLQVVEYSQIPK 256 (420)
T ss_dssp T-HHHHHHHHHT-----T-SEEEEEEE-CSTT-----TSSE----EEEEETTEEEEEEGGGS-H
T ss_pred cCHHHHHHHHhc-----cchhheeeeecCCCC-----Ccee----EEEEeCCccEEEEeccCCH
Confidence 223456666554 3555544433 2222 1223 4443221235777777653
No 263
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.64 E-value=0.067 Score=51.76 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=59.4
Q ss_pred CcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcccCC-CEEEE
Q 007537 58 NVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHG-DFVLI 136 (599)
Q Consensus 58 n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~~-dfllv 136 (599)
-+|||+|+++.+..+++.+++|+++. +.+..++.. ..+.++.+... |.+.+++.......-.. .++++
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~--------~~v~~i~~~~~-G~~~si~~al~~~~~~~~~vlv~ 97 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN--------LGAPVLRDPGP-GLNNALNAALAEAREPGGAVLIL 97 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh--------cCCEEEecCCC-CHHHHHHHHHHHhhccCCeEEEE
Confidence 37999999999999988888888764 445555432 22344554443 88898887643211122 38999
Q ss_pred cCCe--echhhHHHHHHHHH
Q 007537 137 SGDT--VSNMLLTQALQEHK 154 (599)
Q Consensus 137 ~gD~--v~~~~l~~ll~~h~ 154 (599)
.||+ +....+..+++.++
T Consensus 98 ~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 98 MADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred eCCCCCCCHHHHHHHHHhcc
Confidence 9999 67778888888664
No 264
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.61 E-value=0.021 Score=62.16 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=48.9
Q ss_pred CCEECCCCEEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEE
Q 007537 351 GTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVL 417 (599)
Q Consensus 351 ~~~Ig~~~~I~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vi 417 (599)
.+.+.+++.|-+|+|..+|.||++++|++|+|..++.||.+|.|.++-+..... ..+..|+.+..+
T Consensus 273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~~~-~~~~~lpd~~~~ 338 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSWSI-LPGLTLPDGVCL 338 (414)
T ss_pred ccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccccc-ccCcccCCceEE
Confidence 445677778889999999999999999999999999999999998876655543 223344444444
No 265
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=93.27 E-value=0.14 Score=55.71 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=41.9
Q ss_pred CCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCCEECCCCEECCC
Q 007537 366 GEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420 (599)
Q Consensus 366 G~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~~g~vig~~ 420 (599)
...+.+..++.|.+|+|..++.||++++|.+|.|+.++.||++|+|- |+-+...
T Consensus 271 ~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIis-Gv~~~~~ 324 (414)
T PF07959_consen 271 TTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS-GVDINSW 324 (414)
T ss_pred ccccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEE-CCccccc
Confidence 34566778888888888888888888888888888888888887776 5644443
No 266
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=91.85 E-value=1.2 Score=39.38 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=64.2
Q ss_pred cceeCC-cchHHHHHHHHHHCC--CcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhccc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~g--v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i 129 (599)
++|..| .++|.++++++...+ ..+++|+.....+...+.+...... ...+..+......|.+.++.... ...
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~--~~~ 76 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK---DPRVIRVINEENQGLAAARNAGL--KAA 76 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc---CCCeEEEEecCCCChHHHHHHHH--HHh
Confidence 456655 699999999999997 7889888887766666666542111 12345555666778888777543 233
Q ss_pred CCC-EEEEcCCeechhh-HHHHHHHHH
Q 007537 130 HGD-FVLISGDTVSNML-LTQALQEHK 154 (599)
Q Consensus 130 ~~d-fllv~gD~v~~~~-l~~ll~~h~ 154 (599)
..+ ++++.+|.+...+ +..++..+.
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHh
Confidence 566 7889999976654 444434333
No 267
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=82.37 E-value=11 Score=33.94 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=63.2
Q ss_pred cceeCCc-chHHHHHHHHHHC--CCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhccc
Q 007537 53 LLPLVNV-PMINYTLAWLEAA--GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (599)
Q Consensus 53 LLpi~n~-PlI~y~Le~L~~~--gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i 129 (599)
++|.-|. ..|..+|+.|.+. ...+|+|+.....+...+.+.+..- .+..+.++..+...|.+.++... ....
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~---~~~~i~~i~~~~n~g~~~~~n~~--~~~a 77 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE---SDPNIRYIRNPENLGFSAARNRG--IKHA 77 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC---CSTTEEEEEHCCCSHHHHHHHHH--HHH-
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc---ccccccccccccccccccccccc--cccc
Confidence 5677774 7899999998887 4567777776544444444433100 12467778777777777777754 3445
Q ss_pred CCC-EEEEcCCeechh-hHHHHHHHHHHh
Q 007537 130 HGD-FVLISGDTVSNM-LLTQALQEHKER 156 (599)
Q Consensus 130 ~~d-fllv~gD~v~~~-~l~~ll~~h~~~ 156 (599)
+++ ++++..|.+..- -+..+++.+.+.
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 677 677889995554 588888888874
No 268
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=71.55 E-value=46 Score=32.77 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=64.5
Q ss_pred CCCCCCCCc--ccceeCC-cchHHHHHHHHHHCCC----cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCC
Q 007537 43 RPITLERPK--VLLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIIS 115 (599)
Q Consensus 43 ~PlT~~~PK--~LLpi~n-~PlI~y~Le~L~~~gv----~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~ 115 (599)
.+.....|+ .++|..| ...|..+|+.+..... -+++|+.....+...+.+.. +.. . .+.++......|
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~--~~~--~-~v~~i~~~~~~g 96 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE--YAD--K-GVKLLRFPERRG 96 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--Hhh--C-cEEEEEcCCCCC
Confidence 333445555 5778777 5678888888876532 26777766555555555543 110 0 355566666678
Q ss_pred HHHHHHHHHHhcccCCC-EEEEcCCeechh-hHHHHHHHHH
Q 007537 116 AGDALRLIYEQNVIHGD-FVLISGDTVSNM-LLTQALQEHK 154 (599)
Q Consensus 116 ~g~alr~~~~~~~i~~d-fllv~gD~v~~~-~l~~ll~~h~ 154 (599)
.+.++.... ...++| ++++.+|.+..- -|..+++...
T Consensus 97 ~~~a~n~gi--~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 97 KAAALNRAL--ALATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred hHHHHHHHH--HHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 787776553 335678 788999996554 4677776653
No 269
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.03 E-value=45 Score=29.89 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=60.5
Q ss_pred cceeCC-cchHHHHHHHHHHCC--CcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhccc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~g--v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i 129 (599)
++|.-| ..+|..+|+.|...- ..+++|+.....+...+.+.... -.+.++..+...|.+.|+.... ...
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~------~~~~~~~~~~~~g~~~a~n~~~--~~~ 73 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF------PEVRLIRNGENLGFGAGNNQGI--REA 73 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC------CCeEEEecCCCcChHHHhhHHH--hhC
Confidence 456655 678999999998863 45777776655555556555421 1355566666778888877553 334
Q ss_pred CCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 130 HGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 130 ~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
..+ ++++-.|.+..- .+..+++.+..
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 101 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQ 101 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHh
Confidence 677 567778875444 46776665554
No 270
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=69.49 E-value=51 Score=31.06 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=58.3
Q ss_pred cceeCCcc---hHHHHHHHHHHCC--CcEEEEEcc-CchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHh
Q 007537 53 LLPLVNVP---MINYTLAWLEAAG--VAEVFVFCC-AHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (599)
Q Consensus 53 LLpi~n~P---lI~y~Le~L~~~g--v~eV~vv~~-~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~ 126 (599)
++|..|.. .|..+|+.+.... ..+++|+-. ...+...+.+... ... ..+.++..+...|.+.|+-...
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~--~~~--~~i~~i~~~~n~G~~~a~N~g~-- 76 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEF--KRK--LPLKVVPLEKNRGLGKALNEGL-- 76 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHH--Hhc--CCeEEEEcCccccHHHHHHHHH--
Confidence 67888753 8999999998864 246665543 3234444444321 101 2355565555678888876543
Q ss_pred cccCCC-EEEEcCCeec-hhhHHHHHHHHHH
Q 007537 127 NVIHGD-FVLISGDTVS-NMLLTQALQEHKE 155 (599)
Q Consensus 127 ~~i~~d-fllv~gD~v~-~~~l~~ll~~h~~ 155 (599)
...+++ ++++.+|.+. .--+..+++...+
T Consensus 77 ~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 77 KHCTYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred HhcCCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 234678 5778888854 4457777776544
No 271
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=67.70 E-value=43 Score=32.12 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=56.5
Q ss_pred cceeCC-cchHHHHHHHHHHC------CCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHH
Q 007537 53 LLPLVN-VPMINYTLAWLEAA------GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE 125 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~------gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~ 125 (599)
++|.-| ...|..+|+.+... ..-+|+|+-+...+...+.++.. ....+..+.++......|.+.|+....
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~--~~~~~~~i~~i~~~~n~G~~~a~~~g~- 78 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKL--ARKNPALIRVLTLPKNRGKGGAVRAGM- 78 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHH--HHhCCCcEEEEEcccCCCcHHHHHHHH-
Confidence 456666 45667777776653 23477777554443333333320 000011246666666778888888553
Q ss_pred hcccCCC-EEEEcCCeech-hhHHHHHHHHH
Q 007537 126 QNVIHGD-FVLISGDTVSN-MLLTQALQEHK 154 (599)
Q Consensus 126 ~~~i~~d-fllv~gD~v~~-~~l~~ll~~h~ 154 (599)
....++ ++++.+|.... -.+..+++...
T Consensus 79 -~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~ 108 (211)
T cd04188 79 -LAARGDYILFADADLATPFEELEKLEEALK 108 (211)
T ss_pred -HHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 334678 67788998554 45777777643
No 272
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=67.60 E-value=47 Score=29.54 Aligned_cols=99 Identities=20% Similarity=0.181 Sum_probs=59.1
Q ss_pred cceeCC-cchHHHHHHHHHHCC--CcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhccc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~g--v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i 129 (599)
++|.-| ...|..+|+.+.... ..+++|+-....+...+.+.. +.......+.++......|.+.++..... ..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~n~~~~--~~ 77 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEE--LAALYIRRVLVVRDKENGGKAGALNAGLR--HA 77 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHH--HhccccceEEEEEecccCCchHHHHHHHH--hc
Confidence 466666 478889999998874 456777665444444444433 11000123455555667788888775533 34
Q ss_pred CCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 130 HGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 130 ~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
+++ ++++.+|.+..- -|..++..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 777 688889985544 46666455544
No 273
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=63.26 E-value=54 Score=33.63 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=60.9
Q ss_pred cceeCCc--chHHHHHHHHHHCCC----cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHh
Q 007537 53 LLPLVNV--PMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (599)
Q Consensus 53 LLpi~n~--PlI~y~Le~L~~~gv----~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~ 126 (599)
++|.-|. ..|..+|+.+...-- .||+||-....+.....+...... ...-.+.++..+...|.+.|.-...
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~-~~~~~v~vi~~~~n~G~~~a~N~g~-- 79 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYK-KYLPKVKVLRLKKREGLIRARIAGA-- 79 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHh-hcCCcEEEEEcCCCCCHHHHHHHHH--
Confidence 4677664 489999999886531 378887665444333333210000 0012466676667778887765443
Q ss_pred cccCCC-EEEEcCCeechh-hHHHHHHHHHHh
Q 007537 127 NVIHGD-FVLISGDTVSNM-LLTQALQEHKER 156 (599)
Q Consensus 127 ~~i~~d-fllv~gD~v~~~-~l~~ll~~h~~~ 156 (599)
..-+++ ++++.+|++..- -|..+++.....
T Consensus 80 ~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~ 111 (299)
T cd02510 80 RAATGDVLVFLDSHCEVNVGWLEPLLARIAEN 111 (299)
T ss_pred HHccCCEEEEEeCCcccCccHHHHHHHHHHhC
Confidence 234678 678899995544 578888877654
No 274
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=62.92 E-value=8.2 Score=42.19 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=50.2
Q ss_pred CcccCCCcEEEEEeCCCCCCCCCCCCCCCcccceeC---CcchHHHHHHHHHHC----------CCc-EEEEEccCc-hH
Q 007537 22 DDLARQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA----------GVA-EVFVFCCAH-SK 86 (599)
Q Consensus 22 ~~~~~~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~---n~PlI~y~Le~L~~~----------gv~-eV~vv~~~~-~~ 86 (599)
..-.+....+|++|+|.|||++- ..||.++|++ |+.+++...+.+... |.+ ..||.++.. .+
T Consensus 91 ~~i~~~~~a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e 167 (477)
T KOG2388|consen 91 RLIAEGKVAVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHE 167 (477)
T ss_pred hhhhcCcceEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccH
Confidence 34456778999999999999996 7899999998 466887766654432 222 355666655 56
Q ss_pred HHHHHHHh
Q 007537 87 QVIDYLEN 94 (599)
Q Consensus 87 ~i~~~l~~ 94 (599)
...+|+..
T Consensus 168 ~T~~~f~~ 175 (477)
T KOG2388|consen 168 ATLEYFES 175 (477)
T ss_pred HhHhHHhh
Confidence 67788775
No 275
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=61.96 E-value=16 Score=43.92 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=26.4
Q ss_pred CEEeceEECCCCEECCC-cEEeceEECCCCEECCCcEEeceE
Q 007537 358 SKISDSVIGEGCTIGSN-VLIEGSYIWDNVIIEDGCELRHVI 398 (599)
Q Consensus 358 ~~I~~svIG~~~~Ig~~-~~I~~s~I~~~v~Ig~~~~I~~si 398 (599)
++|-||+|..+|.+|++ ++|++|+|+.+++||.+|+|+++.
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~ 373 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVP 373 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccc
Confidence 34556666666666666 335667777777777777766554
No 276
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=58.71 E-value=1.1e+02 Score=30.13 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=59.2
Q ss_pred cceeCC-cchHHHHHHHHHHCCC----cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv----~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~ 127 (599)
++|.-| .-.|..+|+.+..... -+|+|+.....+...+.+++. .......+..+......|.+.|+.....
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~--~~~~~~~i~~~~~~~~~G~~~a~n~g~~-- 81 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL--RLPSIFRVVVVPPSQPRTKPKACNYALA-- 81 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh--ccCCCeeEEEecCCCCCchHHHHHHHHH--
Confidence 566666 3578888888887633 256666554444444444431 1111234555544455677888775533
Q ss_pred ccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 128 ~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
..+++ ++++.+|.+... -+..+++.+.+
T Consensus 82 ~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~ 111 (241)
T cd06427 82 FARGEYVVIYDAEDAPDPDQLKKAVAAFAR 111 (241)
T ss_pred hcCCCEEEEEcCCCCCChHHHHHHHHHHHh
Confidence 35678 577889985554 56788877754
No 277
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=58.28 E-value=77 Score=30.67 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=59.6
Q ss_pred ccceeCC-c-chHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhccc
Q 007537 52 VLLPLVN-V-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (599)
Q Consensus 52 ~LLpi~n-~-PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i 129 (599)
.++|.-| . +.|..+|+.+......+|+|+.....+.....+..... ...+.++. ....|.+.++.... ...
T Consensus 4 VvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~----~~~~~v~~-~~~~g~~~a~n~g~--~~a 76 (235)
T cd06434 4 VIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK----YGGIFVIT-VPHPGKRRALAEGI--RHV 76 (235)
T ss_pred EEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc----CCcEEEEe-cCCCChHHHHHHHH--HHh
Confidence 3567666 4 78999999998876668888776666655555532111 11233333 34456666665432 234
Q ss_pred CCC-EEEEcCCeechh-hHHHHHHHHH
Q 007537 130 HGD-FVLISGDTVSNM-LLTQALQEHK 154 (599)
Q Consensus 130 ~~d-fllv~gD~v~~~-~l~~ll~~h~ 154 (599)
+++ ++++.+|.+..- -|..+++.+.
T Consensus 77 ~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 678 688899996555 4677776654
No 278
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=58.12 E-value=1.3e+02 Score=28.03 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=57.9
Q ss_pred cceeCC-cchHHHHHHHHHHCCC----cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv----~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~ 127 (599)
++|..| ...|..+|+.+..... -+|+|+.....+...+.+... +..+.........|.+.|+.......
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~------~~~~~~~~~~~~~gk~~aln~g~~~a 75 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA------GATVLERHDPERRGKGYALDFGFRHL 75 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc------CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 567777 5788889999887643 467777655555555555431 12233333344567888877553221
Q ss_pred ---ccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 128 ---VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 128 ---~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
.-+++ ++++-+|..... -+..++..+..
T Consensus 76 ~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 76 LNLADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred HhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 11356 678999996555 46676666543
No 279
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=56.62 E-value=94 Score=28.60 Aligned_cols=98 Identities=18% Similarity=0.133 Sum_probs=56.9
Q ss_pred cceeCC-cchHHHHHHHHHHC----CCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhc
Q 007537 53 LLPLVN-VPMINYTLAWLEAA----GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~----gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~ 127 (599)
++|..| ...|..+|+.+.+. ...+|+|+-....+...+.++..... ...+.++..+...|.+.|+.... .
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~---~~~~~~~~~~~n~G~~~a~n~g~--~ 76 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAAR---VPRVRVIRLSRNFGKGAAVRAGF--K 76 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHh---CCCeEEEEccCCCCccHHHHHHH--H
Confidence 355555 35677888888877 35777777655444444444321000 01235565566677777776442 3
Q ss_pred ccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 128 ~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
..+++ ++++.+|..... -|..++.....
T Consensus 77 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~ 106 (185)
T cd04179 77 AARGDIVVTMDADLQHPPEDIPKLLEKLLE 106 (185)
T ss_pred HhcCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 34567 677889985444 47777775333
No 280
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.09 E-value=1.2e+02 Score=27.92 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=56.8
Q ss_pred cceeCC-cchHHHHHHHHHHCCCc--EEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhccc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGVA--EVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv~--eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i 129 (599)
.+|.-| ...|+.+|+.|...... +|+|+-....+...+.+..... .+.++......|.+.++.... ...
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~------~~~~~~~~~~~g~~~a~n~~~--~~a 74 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED------KITYWISEPDKGIYDAMNKGI--ALA 74 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh------hcEEEEecCCcCHHHHHHHHH--HHc
Confidence 355555 45789999999876544 6777655444555555544110 122333345567887776543 334
Q ss_pred CCC-EEEEcCCe-echhhHHHHHHHHHHh
Q 007537 130 HGD-FVLISGDT-VSNMLLTQALQEHKER 156 (599)
Q Consensus 130 ~~d-fllv~gD~-v~~~~l~~ll~~h~~~ 156 (599)
+++ ++++.+|. +....+..++..+...
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 677 57778887 4455677777555443
No 281
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=49.29 E-value=30 Score=29.53 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=13.8
Q ss_pred CCCEECCCcEEeceEECCCCEECCCCEE
Q 007537 384 DNVIIEDGCELRHVIVCDGVIMKAGAVL 411 (599)
Q Consensus 384 ~~v~Ig~~~~I~~siI~~~~~Ig~~~~I 411 (599)
+.+.|...+.|.+.+-.....|.+++.+
T Consensus 68 ~~v~i~~~~~v~G~i~~~~l~v~~ga~i 95 (101)
T PF04519_consen 68 GKVEIYGTARVEGDITAGKLEVEGGASI 95 (101)
T ss_pred ceEEEeCCEEEEEEEEECEEEEeCCCEE
Confidence 4444555555555554444444444444
No 282
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=47.56 E-value=1.3e+02 Score=29.39 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=54.7
Q ss_pred ccceeCC-cchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcccC
Q 007537 52 VLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIH 130 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~ 130 (599)
.++|.-| ...|..+|+.|... ..+|+|+-+...+...+.++.. +.+ ++.. ...|.+.+.... .....
T Consensus 4 vii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~~------~~~--v~~~-~~~g~~~~~n~~--~~~a~ 71 (229)
T cd02511 4 VVIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKEY------GAK--VYQR-WWDGFGAQRNFA--LELAT 71 (229)
T ss_pred EEEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHHc------CCE--EEEC-CCCChHHHHHHH--HHhCC
Confidence 3456655 56788889888764 3688888776555555555431 233 3333 556777766543 23356
Q ss_pred CC-EEEEcCCeechhhH-HHHHHHH
Q 007537 131 GD-FVLISGDTVSNMLL-TQALQEH 153 (599)
Q Consensus 131 ~d-fllv~gD~v~~~~l-~~ll~~h 153 (599)
++ ++++.+|.+...++ ..+++..
T Consensus 72 ~d~vl~lDaD~~~~~~~~~~l~~~~ 96 (229)
T cd02511 72 NDWVLSLDADERLTPELADEILALL 96 (229)
T ss_pred CCEEEEEeCCcCcCHHHHHHHHHHH
Confidence 77 67888998666554 4444443
No 283
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=44.49 E-value=79 Score=29.30 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=14.5
Q ss_pred EECCCCEECCCcEEeceEECCCCEECCCCEEC
Q 007537 381 YIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK 412 (599)
Q Consensus 381 ~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~~I~ 412 (599)
+..+.+.|..++.+.+-|=+....|..++++.
T Consensus 86 ~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 86 LAAERVELYPGGRVIGDITTKEITVEEGAIFE 117 (146)
T ss_pred EEeeEEEEcCCcEEeeeecccEEEEccCCEEE
Confidence 33344444444444444444444444444443
No 284
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=43.96 E-value=39 Score=28.82 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=34.6
Q ss_pred EECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEEC-CCCEECCCCEEC
Q 007537 335 EQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC-DGVIMKAGAVLK 412 (599)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~svIG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~-~~~~Ig~~~~I~ 412 (599)
.|++++.+.++........|... + ++........|+.++.|.+.+-.+.+.|.. . +.+.+.+ ..+.|...+.|.
T Consensus 4 ~I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~G-~-v~G~v~a~~~v~i~~~~~v~ 79 (101)
T PF04519_consen 4 IIGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVIISG-S-VDGNVEASGKVEIYGTARVE 79 (101)
T ss_pred EECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEEcC-E-EeEEEEECceEEEeCCEEEE
Confidence 44555555444444444444211 3 333333356666666665555555555542 2 4444443 333455544443
No 285
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=43.88 E-value=1.5e+02 Score=28.68 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=56.4
Q ss_pred cceeCC-cchHHHHHHHHHHCCC----cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv----~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~ 127 (599)
++|.-| .+.|..+|+.|..... -+|+|+-+...+...+.++..... ...+.++... ..+.+.|+.... .
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~---~~~v~~i~~~-~~~~~~a~N~g~--~ 78 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK---DPRIRLIDNP-KRIQSAGLNIGI--R 78 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc---CCeEEEEeCC-CCCchHHHHHHH--H
Confidence 456655 5678888999987644 367777665555555555431100 1235555443 345566655432 2
Q ss_pred ccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 128 ~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
..++| ++++.+|.+..- -+..+++.++.
T Consensus 79 ~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~ 108 (249)
T cd02525 79 NSRGDIIIRVDAHAVYPKDYILELVEALKR 108 (249)
T ss_pred HhCCCEEEEECCCccCCHHHHHHHHHHHhc
Confidence 34677 677888885544 47777765543
No 286
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=43.28 E-value=2.7e+02 Score=26.87 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=54.2
Q ss_pred cceeCCc-c-hHHHHHHHHHHCCC--cEEEEEccCchH-----HHHHHHHhcccCCCCCceEEEEecCCcCCH-HHHHHH
Q 007537 53 LLPLVNV-P-MINYTLAWLEAAGV--AEVFVFCCAHSK-----QVIDYLENSEWFSQPNFTVKTIESHNIISA-GDALRL 122 (599)
Q Consensus 53 LLpi~n~-P-lI~y~Le~L~~~gv--~eV~vv~~~~~~-----~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~-g~alr~ 122 (599)
++|.-|. | +|..+|+.|..... -+|+|+-+...+ .++++.... +..+.++......|. +.|+-.
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~------~~~i~~i~~~~~~G~~~~a~n~ 76 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL------GERFRFFHVEPLPGAKAGALNY 76 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh------CCcEEEEEcCCCCCCchHHHHH
Confidence 5788885 3 89999999998753 366666543322 233444331 123555544433453 566654
Q ss_pred HHHhcccCCC-EEEEcCCeech-hhHHHHHHHHH
Q 007537 123 IYEQNVIHGD-FVLISGDTVSN-MLLTQALQEHK 154 (599)
Q Consensus 123 ~~~~~~i~~d-fllv~gD~v~~-~~l~~ll~~h~ 154 (599)
......-+.| ++++..|.+.. --|..++....
T Consensus 77 g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 77 ALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 4322111246 68889998544 45677776553
No 287
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=41.71 E-value=1.5e+02 Score=28.30 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=56.4
Q ss_pred cceeCC-cchHHHHHHHHHHCC---CcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAG---VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~g---v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~ 128 (599)
++|.-| ...|..+|+.+...- ..+|+|+-....+...+.++.. ... .-.+.++......|.+.|+.... ..
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~--~~~-~~~i~~~~~~~n~G~~~a~n~g~--~~ 76 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVREL--AKE-YPRVRLIVRPGKRGLGSAYIEGF--KA 76 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHH--HHh-CCceEEEecCCCCChHHHHHHHH--HH
Confidence 466666 356788888887642 3577777654434333333320 000 01245555566778888776443 33
Q ss_pred cCCC-EEEEcCCeechh-hHHHHHHHHH
Q 007537 129 IHGD-FVLISGDTVSNM-LLTQALQEHK 154 (599)
Q Consensus 129 i~~d-fllv~gD~v~~~-~l~~ll~~h~ 154 (599)
.+++ ++++.+|..... -+..+++...
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~ 104 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQL 104 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5677 567889985544 4677777543
No 288
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=40.20 E-value=5.3e+02 Score=28.21 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=45.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcccceeC-CcchHHHHHHHHHHC----CCcEEEE-EccCc-hHHHHHHHHh
Q 007537 27 QPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVAEVFV-FCCAH-SKQVIDYLEN 94 (599)
Q Consensus 27 ~~l~aVILA~g~gtR~~PlT~~~PK~LLpi~-n~PlI~y~Le~L~~~----gv~eV~v-v~~~~-~~~i~~~l~~ 94 (599)
+++..+=|-||.|+-|+= ..||.++++- |..++|-++.++... +++--+| ..+.. .++.+.++++
T Consensus 102 ~KLavlKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~k 173 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKK 173 (498)
T ss_pred hheEEEEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHH
Confidence 456677799999999985 7899999997 588888776665554 4443333 44433 4566666665
No 289
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=39.78 E-value=2e+02 Score=27.37 Aligned_cols=101 Identities=24% Similarity=0.302 Sum_probs=58.3
Q ss_pred ccceeCC---cchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcc
Q 007537 52 VLLPLVN---VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (599)
Q Consensus 52 ~LLpi~n---~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~ 128 (599)
.|+|..+ .|=+.-.+..+..+|+ .++|+.+.....+..+... +.+.++.... .-.+-+++.+..+-.
T Consensus 38 TLv~wd~~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~--------l~v~fi~~A~-KP~~~~fr~Al~~m~ 107 (175)
T COG2179 38 TLVPWDNPDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEK--------LGVPFIYRAK-KPFGRAFRRALKEMN 107 (175)
T ss_pred ceecccCCCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhh--------cCCceeeccc-CccHHHHHHHHHHcC
Confidence 4666654 6777777777888887 4555555555666655543 4555554322 123445555544444
Q ss_pred cCCCEEEEcCCeechhhHHHHHHHHHHhhccCCCceEEEEEeecC
Q 007537 129 IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSK 173 (599)
Q Consensus 129 i~~dfllv~gD~v~~~~l~~ll~~h~~~~~~d~~a~mT~~~~~~~ 173 (599)
+..+=+++-||.++ .+++.-|+. ..-|+++.+..
T Consensus 108 l~~~~vvmVGDqL~----TDVlggnr~-------G~~tIlV~Pl~ 141 (175)
T COG2179 108 LPPEEVVMVGDQLF----TDVLGGNRA-------GMRTILVEPLV 141 (175)
T ss_pred CChhHEEEEcchhh----hhhhccccc-------CcEEEEEEEec
Confidence 55555666789864 355555554 45566666654
No 290
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=39.67 E-value=2.7e+02 Score=27.26 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=55.2
Q ss_pred cceeCC-cchHHHHHHHHHHC----CCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhc
Q 007537 53 LLPLVN-VPMINYTLAWLEAA----GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~----gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~ 127 (599)
++|.-| ..-|..+++.+.+. .--+|+|+-....+...+.+.+..-. .+...+.++......|.+.|+.....
T Consensus 14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~-~~~~~v~~~~~~~n~G~~~a~n~g~~-- 90 (243)
T PLN02726 14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKV-YGEDRILLRPRPGKLGLGTAYIHGLK-- 90 (243)
T ss_pred EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHh-cCCCcEEEEecCCCCCHHHHHHHHHH--
Confidence 455555 34566666666542 12367777654444444444321000 01124555555666788888875532
Q ss_pred ccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 128 ~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
..+++ ++++.+|..... .+..+++....
T Consensus 91 ~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~ 120 (243)
T PLN02726 91 HASGDFVVIMDADLSHHPKYLPSFIKKQRE 120 (243)
T ss_pred HcCCCEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 34677 678999996554 56777775543
No 291
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=39.22 E-value=2.1e+02 Score=29.99 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=53.2
Q ss_pred ccceeCC-cchHHHHHHH----HHHCCC-cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHH
Q 007537 52 VLLPLVN-VPMINYTLAW----LEAAGV-AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE 125 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~----L~~~gv-~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~ 125 (599)
..+|.-| ..-|..+++. +.+... -||+|+-....+...+.+.+. ....+..+..+......|.+.|++...
T Consensus 10 VVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~--~~~~~~~v~~i~~~~n~G~~~A~~~G~- 86 (325)
T PRK10714 10 VVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEA--AQAPDSHIVAILLNRNYGQHSAIMAGF- 86 (325)
T ss_pred EEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHH--HhhcCCcEEEEEeCCCCCHHHHHHHHH-
Confidence 3466655 3334444444 444432 366666554333333333220 000123444444445668888888553
Q ss_pred hcccCCC-EEEEcCCeec-hhhHHHHHHHHH
Q 007537 126 QNVIHGD-FVLISGDTVS-NMLLTQALQEHK 154 (599)
Q Consensus 126 ~~~i~~d-fllv~gD~v~-~~~l~~ll~~h~ 154 (599)
...++| ++++.+|... ...+.++++...
T Consensus 87 -~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~ 116 (325)
T PRK10714 87 -SHVTGDLIITLDADLQNPPEEIPRLVAKAD 116 (325)
T ss_pred -HhCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 334678 6788999954 457888888764
No 292
>PRK11204 N-glycosyltransferase; Provisional
Probab=39.04 E-value=1.8e+02 Score=31.38 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=59.8
Q ss_pred ccceeCC-cchHHHHHHHHHHCCC--cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcc
Q 007537 52 VLLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~L~~~gv--~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~ 128 (599)
.++|.-| ...|..+++.+.+... -+|+|+-....+...+.++.-. .. .-.+.++......|.+.|+..... .
T Consensus 58 ViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~--~~-~~~v~~i~~~~n~Gka~aln~g~~--~ 132 (420)
T PRK11204 58 ILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLA--AQ-IPRLRVIHLAENQGKANALNTGAA--A 132 (420)
T ss_pred EEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHH--Hh-CCcEEEEEcCCCCCHHHHHHHHHH--H
Confidence 3566666 4678899999887643 3677766544443333333200 00 113666665566788888775533 3
Q ss_pred cCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 129 IHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 129 i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
.++| ++++.+|.+..- -+..+++.+.+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 4678 688899996554 46777776654
No 293
>PRK10018 putative glycosyl transferase; Provisional
Probab=38.15 E-value=3.6e+02 Score=27.62 Aligned_cols=96 Identities=13% Similarity=0.092 Sum_probs=58.6
Q ss_pred cceeCC-cchHHHHHHHHHHCCCc--EEEEEccCc--hHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGVA--EVFVFCCAH--SKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv~--eV~vv~~~~--~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~ 127 (599)
++|.-| ...|..+|+.+...-.. |++|+-... .+.++++..... ...+.++..+...|.+.|+-... .
T Consensus 10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~-----~~ri~~i~~~~n~G~~~a~N~gi--~ 82 (279)
T PRK10018 10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN-----DPRITYIHNDINSGACAVRNQAI--M 82 (279)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC-----CCCEEEEECCCCCCHHHHHHHHH--H
Confidence 456655 56678899888776433 666665432 245566655311 12467777666778887766432 3
Q ss_pred ccCCC-EEEEcCCeech-hhHHHHHHHHHH
Q 007537 128 VIHGD-FVLISGDTVSN-MLLTQALQEHKE 155 (599)
Q Consensus 128 ~i~~d-fllv~gD~v~~-~~l~~ll~~h~~ 155 (599)
..+++ ++++.+|.+.. .-|..+++...+
T Consensus 83 ~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 83 LAQGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HcCCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 35678 57788887544 457777775543
No 294
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=37.99 E-value=3.2e+02 Score=25.37 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=55.3
Q ss_pred cceeCC-c-chHHHHHHHHHHCCC--cEEEEEccCch-HHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhc
Q 007537 53 LLPLVN-V-PMINYTLAWLEAAGV--AEVFVFCCAHS-KQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (599)
Q Consensus 53 LLpi~n-~-PlI~y~Le~L~~~gv--~eV~vv~~~~~-~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~ 127 (599)
++|.-| . ..|..+|+.|.+.-. .+|+|+-.... ..+...+...... .-.+.++..+...|.+.++-... .
T Consensus 6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~a~n~g~--~ 80 (202)
T cd04184 6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ---DPRIKVVFREENGGISAATNSAL--E 80 (202)
T ss_pred EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc---CCCEEEEEcccCCCHHHHHHHHH--H
Confidence 456555 4 778888999887533 26766654332 2333333320000 11344555555667777765443 2
Q ss_pred ccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 128 ~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
..+++ ++++..|.+..- -+..+++.+..
T Consensus 81 ~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 81 LATGEFVALLDHDDELAPHALYEVVKALNE 110 (202)
T ss_pred hhcCCEEEEECCCCcCChHHHHHHHHHHHh
Confidence 34678 566778885554 57787777633
No 295
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=37.89 E-value=3.4e+02 Score=28.49 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=57.5
Q ss_pred cceeCC-cchHHHHHHHHHHC----------CCcEEEEEccCchHH----HHHHHHhcccCCCCCceEEEEecCCcCCHH
Q 007537 53 LLPLVN-VPMINYTLAWLEAA----------GVAEVFVFCCAHSKQ----VIDYLENSEWFSQPNFTVKTIESHNIISAG 117 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~----------gv~eV~vv~~~~~~~----i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g 117 (599)
.+|.-| .+-|..+|+.+.+. +--+|+|+-....+. ++++..... .++..+.++..+...|.|
T Consensus 75 VIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~---~~~~~i~vi~~~~N~G~~ 151 (333)
T PTZ00260 75 VIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI---NPNIDIRLLSLLRNKGKG 151 (333)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC---CCCCcEEEEEcCCCCChH
Confidence 466666 56677777766541 234777776533333 233332210 012346667666778999
Q ss_pred HHHHHHHHhcccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 118 DALRLIYEQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 118 ~alr~~~~~~~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
.|++.... .-+++ ++++-+|...+. ++..+++....
T Consensus 152 ~A~~~Gi~--~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 152 GAVRIGML--ASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred HHHHHHHH--HccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99886533 23577 577889985544 67777776554
No 296
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=37.30 E-value=1.5e+02 Score=27.32 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=51.5
Q ss_pred cceeCCc-chHHHHHHHHHHC-----CCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHh
Q 007537 53 LLPLVNV-PMINYTLAWLEAA-----GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (599)
Q Consensus 53 LLpi~n~-PlI~y~Le~L~~~-----gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~ 126 (599)
++|.-|. -.|..+|+.|... ..-+|+|+-+...+...+.++. +... .-.+.++......|.+.|+....
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~--~~~~-~~~i~~i~~~~n~G~~~a~n~g~-- 76 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRE--LAAR-DPRVKVIRLSRNFGQQAALLAGL-- 76 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHH--HHhh-CCCEEEEEecCCCCcHHHHHHHH--
Confidence 3555553 3455566655432 2347777665444333333332 0000 11355555555678888887543
Q ss_pred cccCCC-EEEEcCCeechh-hHHHHHHH
Q 007537 127 NVIHGD-FVLISGDTVSNM-LLTQALQE 152 (599)
Q Consensus 127 ~~i~~d-fllv~gD~v~~~-~l~~ll~~ 152 (599)
....++ ++++.+|..... .+..+++.
T Consensus 77 ~~a~~d~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 77 DHARGDAVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred HhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 234667 677889986554 46777775
No 297
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.30 E-value=3.5e+02 Score=25.29 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=57.2
Q ss_pred cceeCC-cchHHHHHHHHHHCCC--cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhc-c
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN-V 128 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv--~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~-~ 128 (599)
++|.-| ...|..+|+.|.+.-. .+|+|+-....+...+.+++... ..++.++..+...|.+.++....... .
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~----~~~i~~~~~~~n~g~~~~~n~~~~~a~~ 77 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGD----LDNIVYLRLPENLGGAGGFYEGVRRAYE 77 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcC----CCceEEEECccccchhhHHHHHHHHHhc
Confidence 345444 5678999999987632 46777766555566666654221 12355666666667666554432211 2
Q ss_pred cCCC-EEEEcCCeechhh-HHHHHHHHH
Q 007537 129 IHGD-FVLISGDTVSNML-LTQALQEHK 154 (599)
Q Consensus 129 i~~d-fllv~gD~v~~~~-l~~ll~~h~ 154 (599)
...+ ++++..|.+...+ +..+++...
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 3456 6778888866554 555555444
No 298
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=37.06 E-value=92 Score=28.86 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=38.9
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCC-CEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECCCC
Q 007537 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEG-CTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (599)
Q Consensus 332 ~~~~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~svIG~~-~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI~~~~~Ig~~~ 409 (599)
..+.|+.++.+.+....-..-+|. | .+...++.++ +.|++..+|.+.+..+..+|. |++.-+....+.+.|...+
T Consensus 22 ~~tli~~g~~f~G~l~f~~~l~Id-G-~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv~-G~v~Gni~~a~~Vei~~~g 97 (146)
T COG1664 22 PETLIGAGTTFKGELVFEGPLRID-G-TFEGDVHSDGGIVVGESGRVEGEIEAEHLIVE-GKVEGNILAAERVELYPGG 97 (146)
T ss_pred CCeEEecCCEEEEEEEecceEEEe-E-EEEEEEEeCCCEEECCccEEEEEEEeCEEEEe-eEEEEEEEEeeEEEEcCCc
Confidence 345555566654444444434443 2 4444455555 777888888776666555554 3332223444444444443
No 299
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.79 E-value=2.7e+02 Score=26.06 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=54.4
Q ss_pred cceeCC-cchHHHHHHHHHHCCC--cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhccc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv--~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i 129 (599)
++|.-| ...|..+|+.+..... -+|+|+-....+...+.++.. ....+..+.++......|.+.++... ....
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~n~g--~~~~ 78 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEY--IDKDPFIIILIRNGKNLGVARNFESL--LQAA 78 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHH--HhcCCceEEEEeCCCCccHHHHHHHH--HHhC
Confidence 567666 4478899999887633 366666543333333333220 00001234555556667888777654 2334
Q ss_pred CCC-EEEEcCCeech-hhHHHHHHH
Q 007537 130 HGD-FVLISGDTVSN-MLLTQALQE 152 (599)
Q Consensus 130 ~~d-fllv~gD~v~~-~~l~~ll~~ 152 (599)
+++ ++++..|.+.. -.|..+++.
T Consensus 79 ~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 79 DGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred CCCEEEEECCCcccChhHHHHHHHH
Confidence 677 56777787444 447777776
No 300
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.65 E-value=2.9e+02 Score=26.16 Aligned_cols=98 Identities=21% Similarity=0.229 Sum_probs=53.8
Q ss_pred cceeCC-cchHHHHHHHHHHCCC----cEEEEEccCchHHHHHHHH-hcccCCCCCceEEEEecCC--cCCHHHHHHHHH
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLE-NSEWFSQPNFTVKTIESHN--IISAGDALRLIY 124 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv----~eV~vv~~~~~~~i~~~l~-~~~w~~~~~~~i~~v~~~~--~~~~g~alr~~~ 124 (599)
++|..| ...|..+|+.|...-. -+|+|+-....+...+.+. .... .+..+.++.... ..|...++...
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~v~~~~~~~~~~~g~~~a~n~g- 77 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAK---PNFQLKILNNSRVSISGKKNALTTA- 77 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhC---CCcceEEeeccCcccchhHHHHHHH-
Confidence 467666 5678899999877632 3677666544333333332 1011 123455554432 34455555433
Q ss_pred HhcccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 125 EQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 125 ~~~~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
....+++ ++++-+|.+..- -|..+++.+..
T Consensus 78 -~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~ 109 (229)
T cd04192 78 -IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQK 109 (229)
T ss_pred -HHHhcCCEEEEECCCcccCHHHHHHHHHHhhc
Confidence 2234567 677889996554 46666665543
No 301
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=34.73 E-value=3.5e+02 Score=24.56 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=52.2
Q ss_pred cceeCC-cchHHHHHHHHHHC--CCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecC-CcCCHHHHHHHHHHhcc
Q 007537 53 LLPLVN-VPMINYTLAWLEAA--GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESH-NIISAGDALRLIYEQNV 128 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~--gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~-~~~~~g~alr~~~~~~~ 128 (599)
++|.-| ...|..+|+.+... ...+|+|+-....+...+.++... ...+..+..+... ...+.+.++... ...
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~n~g--~~~ 77 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFK--SQFPIPIKHVWQEDEGFRKAKIRNKA--IAA 77 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHH--hhcCCceEEEEcCCcchhHHHHHHHH--HHH
Confidence 356655 55788999999875 234677766555555555554310 0012233333322 223444444432 233
Q ss_pred cCCC-EEEEcCCeechhh-HHHHHHHH
Q 007537 129 IHGD-FVLISGDTVSNML-LTQALQEH 153 (599)
Q Consensus 129 i~~d-fllv~gD~v~~~~-l~~ll~~h 153 (599)
.+++ ++++.+|.+...+ +..+++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 4677 6778899866554 56655544
No 302
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=34.20 E-value=3e+02 Score=26.42 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=51.6
Q ss_pred ceeCC-c-chHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcc-cC
Q 007537 54 LPLVN-V-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV-IH 130 (599)
Q Consensus 54 Lpi~n-~-PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~-i~ 130 (599)
+|.-| . ..|..+|+.+... ..+|+|+=+...+........ . ...+.++..+...|.+.|+........ ..
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~-~-----~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~ 75 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL-N-----SEKIELIHLGENLGIAKALNIGIKAALENG 75 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc-c-----CCcEEEEECCCceehHHhhhHHHHHHHhCC
Confidence 44433 5 7888999998877 567777655433333332221 0 124566665666777777665432211 12
Q ss_pred CC-EEEEcCCeechh-hHHHHH
Q 007537 131 GD-FVLISGDTVSNM-LLTQAL 150 (599)
Q Consensus 131 ~d-fllv~gD~v~~~-~l~~ll 150 (599)
.+ ++++.+|.+... .|..++
T Consensus 76 ~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 76 ADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCEEEEECCCCCcCHhHHHHHH
Confidence 36 788999996654 456664
No 303
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=33.69 E-value=2.8e+02 Score=26.08 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=50.1
Q ss_pred ccceeCC-cchHHHHHHHHHHCC--CcEEEEEccCchHHHHHHHHhc-ccCCCCCceEEEEecCCcCCHH---HHHHHHH
Q 007537 52 VLLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKTIESHNIISAG---DALRLIY 124 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~L~~~g--v~eV~vv~~~~~~~i~~~l~~~-~w~~~~~~~i~~v~~~~~~~~g---~alr~~~ 124 (599)
.++|.-| .+.|..+|+.+...- --+|+|+.....+...+.+.+. .. .+.+.+.++......|.+ .++...
T Consensus 5 viip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~n~g- 81 (196)
T cd02520 5 ILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAK--YPNVDARLLIGGEKVGINPKVNNLIKG- 81 (196)
T ss_pred EEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHH--CCCCcEEEEecCCcCCCCHhHHHHHHH-
Confidence 3577766 557888999988752 2466666654433322222220 00 012445555444333432 233222
Q ss_pred HhcccCCC-EEEEcCCeechh-hHHHHHHH
Q 007537 125 EQNVIHGD-FVLISGDTVSNM-LLTQALQE 152 (599)
Q Consensus 125 ~~~~i~~d-fllv~gD~v~~~-~l~~ll~~ 152 (599)
....+++ ++++.+|.+..- -|..+++.
T Consensus 82 -~~~a~~d~i~~~D~D~~~~~~~l~~l~~~ 110 (196)
T cd02520 82 -YEEARYDILVISDSDISVPPDYLRRMVAP 110 (196)
T ss_pred -HHhCCCCEEEEECCCceEChhHHHHHHHH
Confidence 2234677 677889985544 45666654
No 304
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=30.22 E-value=4.2e+02 Score=25.18 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=55.5
Q ss_pred ccceeCCc--chHHHHHHHHHHCCCc----EEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCc-CCHHHHHHHHH
Q 007537 52 VLLPLVNV--PMINYTLAWLEAAGVA----EVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNI-ISAGDALRLIY 124 (599)
Q Consensus 52 ~LLpi~n~--PlI~y~Le~L~~~gv~----eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~-~~~g~alr~~~ 124 (599)
.++|.-|. .+|..+|+.|...... +|+|+-....+...+.+.. +... ..+.++..... .+.+.++....
T Consensus 5 viip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~n~~~ 80 (234)
T cd06421 5 VFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAE--LGVE--YGYRYLTRPDNRHAKAGNLNNAL 80 (234)
T ss_pred EEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHH--hhcc--cCceEEEeCCCCCCcHHHHHHHH
Confidence 35677774 3789999999886543 6777766555566665554 1111 12333333332 23344444332
Q ss_pred HhcccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 125 EQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 125 ~~~~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
...+++ ++++..|.+..- -+..+++...+
T Consensus 81 --~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 81 --AHTTGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred --HhCCCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 234677 677888985554 46676666554
No 305
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=29.78 E-value=3.1e+02 Score=30.05 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=58.8
Q ss_pred ccceeCC-cchHHHHHHHHHHCCC--cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcc
Q 007537 52 VLLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~L~~~gv--~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~ 128 (599)
.++|..| ...|..+|+.+.+... -+|+|+.....+...+.+.+. ... .-.+.++......|.+.|+..... .
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~--~~~-~~~v~vv~~~~n~Gka~AlN~gl~--~ 153 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDAL--LAE-DPRLRVIHLAHNQGKAIALRMGAA--A 153 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHH--HHh-CCCEEEEEeCCCCCHHHHHHHHHH--h
Confidence 6788887 4668889999877632 377777654433333333220 000 013455554556678888775532 3
Q ss_pred cCCC-EEEEcCCeechhh-HHHHHHHHHH
Q 007537 129 IHGD-FVLISGDTVSNML-LTQALQEHKE 155 (599)
Q Consensus 129 i~~d-fllv~gD~v~~~~-l~~ll~~h~~ 155 (599)
.++| ++++-+|.+..-+ +..+++.+.+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 4677 6888999976654 6667665544
No 306
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=29.25 E-value=4.8e+02 Score=24.78 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=53.3
Q ss_pred cceeCC-cchHHHHHHHHHHCCC---cEEEEEccCchH----HHHHHHHhcccCCCCCceEEEEec--CCcCCHHHHHHH
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGV---AEVFVFCCAHSK----QVIDYLENSEWFSQPNFTVKTIES--HNIISAGDALRL 122 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv---~eV~vv~~~~~~----~i~~~l~~~~w~~~~~~~i~~v~~--~~~~~~g~alr~ 122 (599)
++|.-| ...|..+|+.|...-. -+|+|+-....+ .++++..... ..++.+..... ....|.+.|.-.
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~~a~N~ 78 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLE---DSGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCc---ccCeEEEEecccCCCCccHHHHHHH
Confidence 456655 5788999999877532 377777654433 2333332211 11222222221 223566666543
Q ss_pred HHHhcccCCC-EEEEcCCeec-hhhHHHHHHHHHH
Q 007537 123 IYEQNVIHGD-FVLISGDTVS-NMLLTQALQEHKE 155 (599)
Q Consensus 123 ~~~~~~i~~d-fllv~gD~v~-~~~l~~ll~~h~~ 155 (599)
. ....+++ ++++.+|.+. .-.+..++....+
T Consensus 79 g--~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 111 (219)
T cd06913 79 A--IAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQ 111 (219)
T ss_pred H--HHhcCCCEEEEECCCccCChhHHHHHHHHHHh
Confidence 3 2334677 6788999854 4457777766554
No 307
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.89 E-value=5.6e+02 Score=24.08 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=53.1
Q ss_pred cceeCC-cchHHHHHHHHHHCC--CcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhccc
Q 007537 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~g--v~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i 129 (599)
++|.-| .+.|..+|+.+...- ..+|+|+-+...+...+.+.. ..+.++.. ..|.|.++... ....
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~--------~~~~~~~~--~~g~~~a~n~g--~~~a 71 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS--------AGVVVISS--PKGRARQMNAG--AAAA 71 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc--------CCeEEEeC--CcCHHHHHHHH--HHhc
Confidence 567766 457888898888753 346777665555555555554 12344432 34667666533 2334
Q ss_pred CCC-EEEEcCCeechh-hHHHHHHHHH
Q 007537 130 HGD-FVLISGDTVSNM-LLTQALQEHK 154 (599)
Q Consensus 130 ~~d-fllv~gD~v~~~-~l~~ll~~h~ 154 (599)
+++ ++++..|..... -+..++..+.
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~~ 98 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLR 98 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHhh
Confidence 577 678889885444 4566544443
No 308
>PRK10073 putative glycosyl transferase; Provisional
Probab=25.51 E-value=6.1e+02 Score=26.49 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=55.2
Q ss_pred ccceeCC-cchHHHHHHHHHHCCC--cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcc
Q 007537 52 VLLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~L~~~gv--~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~ 128 (599)
..+|+-| ...|..+|+.+...-. -||+|+-....+...+.+.. |... .-.+.++.+ ...|.+.|.-.. ...
T Consensus 10 VIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~--~~~~-~~~i~vi~~-~n~G~~~arN~g--l~~ 83 (328)
T PRK10073 10 IIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKH--YAEN-YPHVRLLHQ-ANAGVSVARNTG--LAV 83 (328)
T ss_pred EEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHH--HHhh-CCCEEEEEC-CCCChHHHHHHH--HHh
Confidence 4577766 5789999999987643 36666654333322222221 0000 113555554 355777775533 334
Q ss_pred cCCC-EEEEcCCee-chhhHHHHHHHHHH
Q 007537 129 IHGD-FVLISGDTV-SNMLLTQALQEHKE 155 (599)
Q Consensus 129 i~~d-fllv~gD~v-~~~~l~~ll~~h~~ 155 (599)
.+++ ++++.+|-+ ..--+..+++...+
T Consensus 84 a~g~yi~flD~DD~~~p~~l~~l~~~~~~ 112 (328)
T PRK10073 84 ATGKYVAFPDADDVVYPTMYETLMTMALE 112 (328)
T ss_pred CCCCEEEEECCCCccChhHHHHHHHHHHh
Confidence 5788 677888884 44456777776544
No 309
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=25.16 E-value=85 Score=26.39 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=24.0
Q ss_pred ceeCCcchHHHHHHHHHHC--CCcEEEEEcc
Q 007537 54 LPLVNVPMINYTLAWLEAA--GVAEVFVFCC 82 (599)
Q Consensus 54 Lpi~n~PlI~y~Le~L~~~--gv~eV~vv~~ 82 (599)
+-++++|+..|.+..+... |.++|.+-..
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKar 34 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKAR 34 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 4578999999999999874 7899988653
No 310
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=24.83 E-value=5.6e+02 Score=23.72 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=49.6
Q ss_pred HHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHhcccCCCEEEEc-CCee
Q 007537 63 NYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLIS-GDTV 141 (599)
Q Consensus 63 ~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~~~i~~dfllv~-gD~v 141 (599)
+++++.|...||+.||-+.+.+...+.+.+.+. ++ +.+|..... ..+..+.+..++-. +--++++. |-=+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~-----~~--i~~i~~rhE-~~A~~mA~gyar~t-~~gv~~~t~GpG~ 71 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEEN-----PG--LRWVGNCNE-LNAGYAADGYARVK-GLGALVTTYGVGE 71 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhc-----CC--ceEEeeCCH-HHHHHHHHHHHHhh-CCEEEEEcCCccH
Confidence 468899999999999999998877777777431 12 344433222 22333344444433 32255554 3336
Q ss_pred chhhHHHHHHHHHHh
Q 007537 142 SNMLLTQALQEHKER 156 (599)
Q Consensus 142 ~~~~l~~ll~~h~~~ 156 (599)
+| -+..+.+.+..+
T Consensus 72 ~n-~~~gl~~A~~~~ 85 (162)
T cd07038 72 LS-ALNGIAGAYAEH 85 (162)
T ss_pred HH-HHHHHHHHHHcC
Confidence 55 356666766664
No 311
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=24.74 E-value=80 Score=31.30 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=50.0
Q ss_pred cEEEEEeCCCC---CCCCCC-CCCCCcccceeCCcchHHHHHHHHHHCCCcEEEEEccCchHHHHHHHHhcccCCCCCce
Q 007537 29 LQAILLADSFT---TKFRPI-TLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFT 104 (599)
Q Consensus 29 l~aVILA~g~g---tR~~Pl-T~~~PK~LLpi~n~PlI~y~Le~L~~~gv~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~ 104 (599)
|++||.--.++ ||+.|. +...-..| -.-|+..++..+.. +. |+|++.. ..+..+-.. . ..
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~~L----a~aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~~-~------~g 64 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEEREAL----ALAMLRDVLAALRA--VD-VVVVSRD--PEVAALARA-R------LG 64 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHHHH----HHHHHHHHHHHHHH---S-EEEEES----S-TTTTT----------S
T ss_pred CeEEEEcCCCCccccccCccCCHHHHHHH----HHHHHHHHHHHHHh--cC-eEEeccc--hhhhhhhhh-c------cC
Confidence 56777765544 677652 11000001 14688999999988 66 6666542 122221110 1 23
Q ss_pred EEEEecCCcCCHHHHHHHHHHhcccCCCEEEEcCCe--echhhHHHHHHHH
Q 007537 105 VKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEH 153 (599)
Q Consensus 105 i~~v~~~~~~~~g~alr~~~~~~~i~~dfllv~gD~--v~~~~l~~ll~~h 153 (599)
+.++.++ ..|+..|+..... ..-...++++++|+ +...++..++...
T Consensus 65 ~~vl~d~-~~gLN~Al~~a~~-~~~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 65 AEVLPDP-GRGLNAALNAALA-AAGDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp SEEEE----S-HHHHHHHHHH--H--S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred CeEecCC-CCCHHHHHHHHHh-ccCCCceEEeecCCccCCHHHHHHHHhcc
Confidence 4445544 5688889887621 11124599999999 8888999988764
No 312
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=23.83 E-value=2e+02 Score=30.69 Aligned_cols=58 Identities=19% Similarity=0.431 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCcccceeCCcc-hHHHHHHHHHHC-CCcEEEEEccCc--hHHHHHHHHhccc
Q 007537 40 TKFRPITLERPKVLLPLVNVP-MINYTLAWLEAA-GVAEVFVFCCAH--SKQVIDYLENSEW 97 (599)
Q Consensus 40 tR~~PlT~~~PK~LLpi~n~P-lI~y~Le~L~~~-gv~eV~vv~~~~--~~~i~~~l~~~~w 97 (599)
..|.||....+.-++-+-++| .+.++|+.|+++ ||+++.||.++. .+++.+.++...+
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~I~F 84 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQSIDF 84 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHhCCc
Confidence 456667667778888888865 789999999998 999999999875 5788888876443
No 313
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=23.67 E-value=76 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHhccCCCCCcccCCCc
Q 007537 4 QKKRAAAAAAAARVSEDPDDLARQPL 29 (599)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l 29 (599)
++|-.+|||+|.+++..+-..+++++
T Consensus 33 r~Kid~aAaeK~s~~~~a~~~p~~p~ 58 (59)
T PF07125_consen 33 RRKIDDAAAEKISATASAGSKPEEPL 58 (59)
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCCC
Confidence 45666788899988876666666553
No 314
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=23.31 E-value=2.8e+02 Score=30.00 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=48.1
Q ss_pred HHHHHHHCC-CcEEEEEccCch--HHHHHHHHhcccCCC-CCceEEEEe--cCCcCCHHHHHHHHHH-hcccCCCEEEEc
Q 007537 65 TLAWLEAAG-VAEVFVFCCAHS--KQVIDYLENSEWFSQ-PNFTVKTIE--SHNIISAGDALRLIYE-QNVIHGDFVLIS 137 (599)
Q Consensus 65 ~Le~L~~~g-v~eV~vv~~~~~--~~i~~~l~~~~w~~~-~~~~i~~v~--~~~~~~~g~alr~~~~-~~~i~~dfllv~ 137 (599)
++..+.+.+ ++.++++++.|. +....++..-. .. +.+...... +.-...+|.++..+.. ..-.+.|.++|+
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~--i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVh 99 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFG--IRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVH 99 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHHhC--CCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 345566665 889999999886 66666665421 11 333333331 1112235555554421 122467899999
Q ss_pred CCeechhhHHHHHHHHHH
Q 007537 138 GDTVSNMLLTQALQEHKE 155 (599)
Q Consensus 138 gD~v~~~~l~~ll~~h~~ 155 (599)
||+.+.+ ...+..++.
T Consensus 100 GDT~t~l--A~alaa~~~ 115 (383)
T COG0381 100 GDTNTTL--AGALAAFYL 115 (383)
T ss_pred CCcchHH--HHHHHHHHh
Confidence 9986654 334444444
No 315
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=23.23 E-value=4.8e+02 Score=27.91 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=56.1
Q ss_pred ccceeCC-cchHHHHHHHHHHCCC---cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecC----CcCCHHHHHHHH
Q 007537 52 VLLPLVN-VPMINYTLAWLEAAGV---AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESH----NIISAGDALRLI 123 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~L~~~gv---~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~----~~~~~g~alr~~ 123 (599)
.++|.-| .+.|..+|+.|..... -+|+|+-....+...+.+++..-.....-.+.++... ...|-+.|+...
T Consensus 44 VIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g 123 (384)
T TIGR03469 44 AVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQG 123 (384)
T ss_pred EEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHH
Confidence 3677766 7889999999987633 3777776654433333322200000000134545422 123444555543
Q ss_pred HHh--ccc-CCC-EEEEcCCeechh-hHHHHHHHHHHh
Q 007537 124 YEQ--NVI-HGD-FVLISGDTVSNM-LLTQALQEHKER 156 (599)
Q Consensus 124 ~~~--~~i-~~d-fllv~gD~v~~~-~l~~ll~~h~~~ 156 (599)
... ... .++ ++++.+|+...- .+..+++...+.
T Consensus 124 ~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~ 161 (384)
T TIGR03469 124 IAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAE 161 (384)
T ss_pred HHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 221 111 167 688999995544 578888776653
No 316
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=21.82 E-value=6e+02 Score=27.76 Aligned_cols=99 Identities=8% Similarity=0.145 Sum_probs=58.5
Q ss_pred ccceeCC-cchHHHHHHHHHHCCCc----EEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCCcCCHHHHHHHHHHh
Q 007537 52 VLLPLVN-VPMINYTLAWLEAAGVA----EVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~L~~~gv~----eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g~alr~~~~~ 126 (599)
.++|.-| ...|..+|+.+.+.... +|+|+-+...+...+.+.+..- ..+.+.+..+ +...|.+.|+-....
T Consensus 53 VIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~-~~~~v~v~~~--~~~~Gka~AlN~gl~- 128 (439)
T TIGR03111 53 IIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQN-EFPGLSLRYM--NSDQGKAKALNAAIY- 128 (439)
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHH-hCCCeEEEEe--CCCCCHHHHHHHHHH-
Confidence 4567666 67888899998876432 5666655444544444332100 0012333333 344688888876543
Q ss_pred cccCCC-EEEEcCCeechh-hHHHHHHHHHH
Q 007537 127 NVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (599)
Q Consensus 127 ~~i~~d-fllv~gD~v~~~-~l~~ll~~h~~ 155 (599)
..+++ ++++.+|.+..- -+..+++.+.+
T Consensus 129 -~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 129 -NSIGKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred -HccCCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 35677 677899996655 46777777654
No 317
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=21.18 E-value=7e+02 Score=30.12 Aligned_cols=94 Identities=11% Similarity=0.143 Sum_probs=59.6
Q ss_pred ccceeCCcc--hHHHHHHHHHHCCC----cEEEEEccCchHHHHHHHHhcccCCCCCceEEEEecCC-cCCHHHHHHHHH
Q 007537 52 VLLPLVNVP--MINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHN-IISAGDALRLIY 124 (599)
Q Consensus 52 ~LLpi~n~P--lI~y~Le~L~~~gv----~eV~vv~~~~~~~i~~~l~~~~w~~~~~~~i~~v~~~~-~~~~g~alr~~~ 124 (599)
.++|..|.+ ++..++..+....- -+|+|+-....+..++..++ +.+.++..++ ..+.++++-...
T Consensus 264 ViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~--------~~v~yI~R~~n~~gKAGnLN~aL 335 (852)
T PRK11498 264 IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE--------VGVKYIARPTHEHAKAGNINNAL 335 (852)
T ss_pred EEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH--------CCcEEEEeCCCCcchHHHHHHHH
Confidence 467888876 67888888766532 26777766666777777664 2456665443 334556665442
Q ss_pred HhcccCCC-EEEEcCCeechhh-HHHHHHHHHH
Q 007537 125 EQNVIHGD-FVLISGDTVSNML-LTQALQEHKE 155 (599)
Q Consensus 125 ~~~~i~~d-fllv~gD~v~~~~-l~~ll~~h~~ 155 (599)
...+++ ++++.+|.+..-+ |+.++..+.+
T Consensus 336 --~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~ 366 (852)
T PRK11498 336 --KYAKGEFVAIFDCDHVPTRSFLQMTMGWFLK 366 (852)
T ss_pred --HhCCCCEEEEECCCCCCChHHHHHHHHHHHh
Confidence 335778 6788999976655 4556655544
No 318
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=20.81 E-value=6.4e+02 Score=24.18 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=51.4
Q ss_pred cceeCC-cchHHHHHHHHHHCCC----cEEEEEccCc---hHHHHHHHHhcccCCCCCceEEEEecCCcCC-HHHHHHHH
Q 007537 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAH---SKQVIDYLENSEWFSQPNFTVKTIESHNIIS-AGDALRLI 123 (599)
Q Consensus 53 LLpi~n-~PlI~y~Le~L~~~gv----~eV~vv~~~~---~~~i~~~l~~~~w~~~~~~~i~~v~~~~~~~-~g~alr~~ 123 (599)
++|.-| ...|..+|+.|..... -+|+|+-+.. .+.+++++.. |. ..+..+..+......| .+.++...
T Consensus 6 iIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~--~~-~~~~~i~~~~~~~~~G~k~~a~n~g 82 (232)
T cd06437 6 QLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEE--YA-AQGVNIKHVRRADRTGYKAGALAEG 82 (232)
T ss_pred EEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHH--Hh-hcCCceEEEECCCCCCCchHHHHHH
Confidence 466666 6788999999987533 2555544422 1234444432 11 1134566565544445 35565433
Q ss_pred HHhcccCCC-EEEEcCCeechhh-HHHHH
Q 007537 124 YEQNVIHGD-FVLISGDTVSNML-LTQAL 150 (599)
Q Consensus 124 ~~~~~i~~d-fllv~gD~v~~~~-l~~ll 150 (599)
. ...+++ ++++.+|.+..-+ |..+.
T Consensus 83 ~--~~a~~~~i~~~DaD~~~~~~~l~~~~ 109 (232)
T cd06437 83 M--KVAKGEYVAIFDADFVPPPDFLQKTP 109 (232)
T ss_pred H--HhCCCCEEEEEcCCCCCChHHHHHhh
Confidence 2 334778 6889999966554 45533
No 319
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=20.06 E-value=6e+02 Score=26.96 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=54.0
Q ss_pred ccceeCC-cchHHHHHHHHHHCCC--cEEEEEccCchH---H-HHHHHHhcccCCCCCceEEEEecCCcCCHH---HHHH
Q 007537 52 VLLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSK---Q-VIDYLENSEWFSQPNFTVKTIESHNIISAG---DALR 121 (599)
Q Consensus 52 ~LLpi~n-~PlI~y~Le~L~~~gv--~eV~vv~~~~~~---~-i~~~l~~~~w~~~~~~~i~~v~~~~~~~~g---~alr 121 (599)
.++|..| .+.|..+|+.+..... -||+|+.....+ + ++++..+. +...+.++..+...|.. .++.
T Consensus 45 ViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~-----p~~~i~~v~~~~~~G~~~K~~~l~ 119 (373)
T TIGR03472 45 VLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF-----PDADIDLVIDARRHGPNRKVSNLI 119 (373)
T ss_pred EEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC-----CCCceEEEECCCCCCCChHHHHHH
Confidence 4788887 6889999999988753 367665543332 2 22222221 23456666544444422 2333
Q ss_pred HHHHhcccCCC-EEEEcCCeechhh-HHHHHHHH
Q 007537 122 LIYEQNVIHGD-FVLISGDTVSNML-LTQALQEH 153 (599)
Q Consensus 122 ~~~~~~~i~~d-fllv~gD~v~~~~-l~~ll~~h 153 (599)
.+ ....+++ ++++-+|.+..-+ |+.++...
T Consensus 120 ~~--~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~ 151 (373)
T TIGR03472 120 NM--LPHARHDILVIADSDISVGPDYLRQVVAPL 151 (373)
T ss_pred HH--HHhccCCEEEEECCCCCcChhHHHHHHHHh
Confidence 22 1224677 7888999965554 56666554
Done!