Query 007538
Match_columns 599
No_of_seqs 407 out of 3086
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 11:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 6.8E-94 1.5E-98 792.7 44.5 580 1-592 1-631 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 4.8E-46 1E-50 383.0 24.9 265 227-493 2-275 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 1.4E-45 3E-50 363.4 25.8 239 4-254 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 4.1E-30 8.8E-35 265.3 34.5 305 6-323 283-600 (980)
5 PF00350 Dynamin_N: Dynamin fa 99.9 9.9E-22 2.1E-26 185.4 16.3 167 41-217 1-168 (168)
6 COG1159 Era GTPase [General fu 99.8 7.9E-19 1.7E-23 173.7 11.1 181 40-281 8-189 (298)
7 smart00302 GED Dynamin GTPase 99.7 1E-17 2.2E-22 140.9 8.4 67 526-592 4-70 (92)
8 PRK09866 hypothetical protein; 99.7 2.2E-14 4.8E-19 155.4 36.1 213 39-261 70-350 (741)
9 TIGR00436 era GTP-binding prot 99.7 5.1E-17 1.1E-21 165.4 13.3 200 40-305 2-202 (270)
10 PF02421 FeoB_N: Ferrous iron 99.7 1.2E-17 2.5E-22 154.0 5.6 150 40-256 2-153 (156)
11 COG0486 ThdF Predicted GTPase 99.7 8.2E-16 1.8E-20 160.9 19.9 180 6-261 193-373 (454)
12 COG1160 Predicted GTPases [Gen 99.7 2.6E-16 5.6E-21 164.2 13.4 159 39-262 4-163 (444)
13 PRK00089 era GTPase Era; Revie 99.7 7.9E-16 1.7E-20 158.6 14.1 166 39-265 6-172 (292)
14 TIGR03156 GTP_HflX GTP-binding 99.6 9.1E-15 2E-19 153.6 17.6 158 36-258 187-346 (351)
15 PRK15494 era GTPase Era; Provi 99.6 4.9E-15 1.1E-19 155.3 13.9 201 39-305 53-254 (339)
16 COG1084 Predicted GTPase [Gene 99.6 6.6E-15 1.4E-19 147.1 11.6 159 5-223 135-296 (346)
17 PRK12299 obgE GTPase CgtA; Rev 99.6 1.5E-14 3.2E-19 150.8 14.3 167 37-263 157-327 (335)
18 PRK11058 GTPase HflX; Provisio 99.6 2.4E-14 5.1E-19 153.9 16.0 161 37-261 196-359 (426)
19 COG0218 Predicted GTPase [Gene 99.6 1.9E-14 4.1E-19 135.5 12.4 128 37-224 23-152 (200)
20 PRK12298 obgE GTPase CgtA; Rev 99.6 2.6E-14 5.6E-19 151.9 15.1 172 37-269 158-338 (390)
21 PRK05291 trmE tRNA modificatio 99.6 1.2E-13 2.6E-18 150.0 20.2 155 37-263 214-369 (449)
22 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.4E-13 3.1E-18 148.7 20.1 179 7-264 181-360 (442)
23 PF02212 GED: Dynamin GTPase e 99.5 8.1E-15 1.8E-19 123.7 6.3 66 527-592 5-70 (92)
24 cd01868 Rab11_like Rab11-like. 99.5 6.6E-14 1.4E-18 131.3 12.9 156 38-259 3-160 (165)
25 cd01878 HflX HflX subfamily. 99.5 1.5E-13 3.2E-18 134.0 15.8 158 36-257 39-198 (204)
26 cd01866 Rab2 Rab2 subfamily. 99.5 9.2E-14 2E-18 131.0 13.5 158 37-261 3-163 (168)
27 cd04112 Rab26 Rab26 subfamily. 99.5 8.9E-14 1.9E-18 134.1 13.6 116 140-268 50-167 (191)
28 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 6.8E-14 1.5E-18 131.3 12.1 156 39-261 1-163 (168)
29 cd01897 NOG NOG1 is a nucleola 99.5 1E-13 2.3E-18 130.2 12.8 158 39-258 1-162 (168)
30 cd01867 Rab8_Rab10_Rab13_like 99.5 1.1E-13 2.5E-18 130.2 12.8 157 38-260 3-161 (167)
31 cd04163 Era Era subfamily. Er 99.5 1.1E-13 2.5E-18 128.7 12.4 157 38-256 3-161 (168)
32 cd01861 Rab6 Rab6 subfamily. 99.5 1.3E-13 2.9E-18 128.5 12.5 154 40-259 2-157 (161)
33 cd01865 Rab3 Rab3 subfamily. 99.5 1.5E-13 3.3E-18 129.0 12.8 109 140-261 50-160 (165)
34 PRK00454 engB GTP-binding prot 99.5 1.1E-13 2.5E-18 133.5 12.2 166 36-264 22-194 (196)
35 cd04122 Rab14 Rab14 subfamily. 99.5 1.8E-13 4E-18 128.6 13.2 155 39-259 3-159 (166)
36 cd01898 Obg Obg subfamily. Th 99.5 1.6E-13 3.4E-18 129.2 12.6 157 40-257 2-164 (170)
37 TIGR03598 GTPase_YsxC ribosome 99.5 2.1E-13 4.6E-18 130.1 13.6 154 36-252 16-178 (179)
38 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 2.3E-13 4.9E-18 127.8 12.7 156 39-260 3-160 (166)
39 cd04119 RJL RJL (RabJ-Like) su 99.5 2.5E-13 5.4E-18 127.1 12.7 154 40-259 2-162 (168)
40 cd04136 Rap_like Rap-like subf 99.5 1.7E-13 3.7E-18 127.9 11.2 154 39-259 2-158 (163)
41 PRK12296 obgE GTPase CgtA; Rev 99.5 1.9E-13 4E-18 147.9 12.9 166 37-264 158-340 (500)
42 TIGR02729 Obg_CgtA Obg family 99.5 1.9E-13 4.2E-18 142.3 12.6 162 37-259 156-324 (329)
43 cd04113 Rab4 Rab4 subfamily. 99.5 2.8E-13 6E-18 126.5 12.2 154 40-259 2-157 (161)
44 PRK12297 obgE GTPase CgtA; Rev 99.5 3.7E-13 8E-18 143.8 14.6 160 37-261 157-324 (424)
45 smart00175 RAB Rab subfamily o 99.5 4.3E-13 9.4E-18 125.2 12.5 155 40-261 2-159 (164)
46 cd04142 RRP22 RRP22 subfamily. 99.5 4.7E-13 1E-17 129.9 13.1 162 40-259 2-169 (198)
47 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 6.1E-13 1.3E-17 128.9 13.8 166 40-265 2-185 (196)
48 PRK03003 GTP-binding protein D 99.5 6.3E-13 1.4E-17 145.8 15.6 160 37-262 37-197 (472)
49 COG1160 Predicted GTPases [Gen 99.5 2.1E-13 4.7E-18 142.5 11.2 164 37-258 177-345 (444)
50 PRK04213 GTP-binding protein; 99.5 3.6E-13 7.8E-18 130.8 12.0 162 37-261 8-189 (201)
51 cd04145 M_R_Ras_like M-Ras/R-R 99.5 3.7E-13 8.1E-18 125.7 11.4 107 140-259 50-159 (164)
52 smart00173 RAS Ras subfamily o 99.5 3.9E-13 8.4E-18 125.8 11.5 154 40-260 2-158 (164)
53 cd04175 Rap1 Rap1 subgroup. T 99.5 3.9E-13 8.5E-18 125.9 11.5 154 39-259 2-158 (164)
54 cd04106 Rab23_lke Rab23-like s 99.5 5E-13 1.1E-17 124.7 12.0 105 140-258 51-157 (162)
55 cd04101 RabL4 RabL4 (Rab-like4 99.5 8.2E-13 1.8E-17 123.6 13.3 107 139-259 51-159 (164)
56 cd01895 EngA2 EngA2 subfamily. 99.5 9.2E-13 2E-17 123.6 13.7 161 38-256 2-167 (174)
57 cd01864 Rab19 Rab19 subfamily. 99.5 7.8E-13 1.7E-17 124.1 13.0 154 38-257 3-159 (165)
58 COG3596 Predicted GTPase [Gene 99.4 5E-13 1.1E-17 130.8 11.6 125 36-224 36-165 (296)
59 cd04144 Ras2 Ras2 subfamily. 99.4 6.4E-13 1.4E-17 128.0 12.4 117 140-269 47-168 (190)
60 cd04138 H_N_K_Ras_like H-Ras/N 99.4 5.6E-13 1.2E-17 124.0 11.6 153 39-259 2-157 (162)
61 cd04127 Rab27A Rab27a subfamil 99.4 6.1E-13 1.3E-17 126.6 11.9 108 140-260 63-173 (180)
62 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 2.3E-13 4.9E-18 125.9 8.4 163 37-265 21-186 (221)
63 cd01862 Rab7 Rab7 subfamily. 99.4 6.7E-13 1.5E-17 125.0 11.9 157 40-262 2-165 (172)
64 cd04120 Rab12 Rab12 subfamily. 99.4 9.4E-13 2E-17 128.0 13.2 156 40-261 2-160 (202)
65 cd01860 Rab5_related Rab5-rela 99.4 9.8E-13 2.1E-17 122.8 12.8 154 40-259 3-158 (163)
66 cd04139 RalA_RalB RalA/RalB su 99.4 8.9E-13 1.9E-17 123.0 12.4 154 40-260 2-158 (164)
67 KOG1423 Ras-like GTPase ERA [C 99.4 2.2E-13 4.8E-18 134.2 8.5 169 38-264 72-271 (379)
68 COG0370 FeoB Fe2+ transport sy 99.4 8.9E-13 1.9E-17 143.8 14.1 156 39-261 4-161 (653)
69 cd00154 Rab Rab family. Rab G 99.4 6.7E-13 1.4E-17 122.4 11.1 152 39-256 1-154 (159)
70 cd04171 SelB SelB subfamily. 99.4 6E-13 1.3E-17 124.1 10.9 102 139-257 50-159 (164)
71 cd04109 Rab28 Rab28 subfamily. 99.4 7.5E-13 1.6E-17 130.2 12.0 158 40-262 2-164 (215)
72 PRK03003 GTP-binding protein D 99.4 1.4E-12 3E-17 143.1 15.4 165 37-261 210-379 (472)
73 TIGR03594 GTPase_EngA ribosome 99.4 1.1E-12 2.4E-17 142.6 14.5 155 40-261 1-157 (429)
74 cd04123 Rab21 Rab21 subfamily. 99.4 1.4E-12 3.1E-17 121.2 12.7 154 40-259 2-157 (162)
75 TIGR03594 GTPase_EngA ribosome 99.4 1.8E-12 4E-17 140.9 15.4 165 37-260 171-340 (429)
76 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 1.5E-12 3.2E-17 123.2 12.7 160 40-265 2-166 (170)
77 PRK00093 GTP-binding protein D 99.4 1.8E-12 3.9E-17 141.2 14.8 156 38-260 1-158 (435)
78 cd04125 RabA_like RabA-like su 99.4 2.3E-12 4.9E-17 123.9 13.8 159 39-263 1-161 (188)
79 cd04114 Rab30 Rab30 subfamily. 99.4 1.7E-12 3.7E-17 122.0 12.6 157 37-259 6-164 (169)
80 cd04164 trmE TrmE (MnmE, ThdF, 99.4 3.4E-12 7.3E-17 117.9 14.3 147 40-257 3-150 (157)
81 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 1.7E-12 3.7E-17 123.0 12.6 155 40-261 4-161 (172)
82 cd04157 Arl6 Arl6 subfamily. 99.4 1.5E-12 3.3E-17 121.4 12.0 107 139-258 44-158 (162)
83 PF01926 MMR_HSR1: 50S ribosom 99.4 1.5E-12 3.3E-17 115.0 11.3 115 40-216 1-116 (116)
84 PRK09554 feoB ferrous iron tra 99.4 4.2E-12 9.2E-17 145.4 17.9 160 39-261 4-165 (772)
85 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 1.2E-12 2.6E-17 127.3 11.5 111 140-263 50-167 (201)
86 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 2.7E-12 5.8E-17 123.0 13.7 154 40-260 5-166 (183)
87 cd01879 FeoB Ferrous iron tran 99.4 1.1E-12 2.4E-17 121.6 10.7 107 140-258 43-151 (158)
88 cd04124 RabL2 RabL2 subfamily. 99.4 1.4E-12 3.1E-17 122.0 11.4 152 40-261 2-155 (161)
89 cd04111 Rab39 Rab39 subfamily. 99.4 3E-12 6.4E-17 125.6 13.7 161 39-264 3-166 (211)
90 COG2262 HflX GTPases [General 99.4 3.6E-12 7.8E-17 131.5 14.6 189 9-262 164-354 (411)
91 cd04176 Rap2 Rap2 subgroup. T 99.4 1.1E-12 2.4E-17 122.7 10.0 152 40-258 3-157 (163)
92 cd04140 ARHI_like ARHI subfami 99.4 1.1E-12 2.4E-17 123.2 9.9 154 39-259 2-160 (165)
93 cd01894 EngA1 EngA1 subfamily. 99.4 1E-12 2.2E-17 121.6 9.4 108 139-258 44-152 (157)
94 PLN03110 Rab GTPase; Provision 99.4 2.9E-12 6.2E-17 126.2 13.2 161 37-263 11-173 (216)
95 cd04110 Rab35 Rab35 subfamily. 99.4 3.6E-12 7.9E-17 123.8 13.6 161 37-264 5-167 (199)
96 cd04156 ARLTS1 ARLTS1 subfamil 99.4 3.7E-12 8E-17 118.6 13.1 147 40-257 1-155 (160)
97 cd00880 Era_like Era (E. coli 99.4 4E-12 8.6E-17 116.8 13.2 110 139-256 44-156 (163)
98 KOG0084 GTPase Rab1/YPT1, smal 99.4 1.1E-12 2.4E-17 121.9 9.3 166 34-265 5-173 (205)
99 cd01890 LepA LepA subfamily. 99.4 2.2E-12 4.7E-17 122.6 11.6 103 139-259 66-172 (179)
100 PTZ00369 Ras-like protein; Pro 99.4 2.1E-12 4.6E-17 124.3 11.6 156 38-260 5-163 (189)
101 KOG1191 Mitochondrial GTPase [ 99.4 2.2E-11 4.8E-16 127.4 19.5 162 36-258 266-444 (531)
102 cd04117 Rab15 Rab15 subfamily. 99.4 3.8E-12 8.2E-17 119.2 12.6 154 40-259 2-157 (161)
103 cd01881 Obg_like The Obg-like 99.4 1.4E-12 3E-17 123.3 9.5 112 139-256 43-169 (176)
104 PRK15467 ethanolamine utilizat 99.4 3.2E-12 6.8E-17 119.5 11.3 105 144-263 41-146 (158)
105 cd00876 Ras Ras family. The R 99.4 3.6E-12 7.8E-17 118.2 11.7 152 40-258 1-155 (160)
106 PLN03108 Rab family protein; P 99.4 6.2E-12 1.3E-16 123.2 13.8 158 37-260 5-164 (210)
107 cd04116 Rab9 Rab9 subfamily. 99.4 6.9E-12 1.5E-16 118.2 13.5 154 37-257 4-164 (170)
108 cd04118 Rab24 Rab24 subfamily. 99.4 3.4E-12 7.4E-17 123.1 11.6 110 140-263 50-165 (193)
109 PRK00093 GTP-binding protein D 99.4 6.2E-12 1.4E-16 137.0 14.9 164 37-259 172-339 (435)
110 cd04151 Arl1 Arl1 subfamily. 99.4 3.8E-12 8.3E-17 118.6 11.3 105 140-258 43-154 (158)
111 cd04115 Rab33B_Rab33A Rab33B/R 99.4 4.1E-12 8.8E-17 120.0 11.6 144 39-248 3-150 (170)
112 cd04154 Arl2 Arl2 subfamily. 99.4 6.3E-12 1.4E-16 119.0 12.9 150 37-257 13-168 (173)
113 PRK09518 bifunctional cytidyla 99.4 6.7E-12 1.4E-16 144.2 15.5 162 36-263 273-435 (712)
114 KOG0078 GTP-binding protein SE 99.4 4.6E-12 9.9E-17 119.5 11.3 164 35-264 9-174 (207)
115 cd04121 Rab40 Rab40 subfamily. 99.4 7.9E-12 1.7E-16 120.3 13.3 160 37-263 5-166 (189)
116 cd01863 Rab18 Rab18 subfamily. 99.4 8.4E-12 1.8E-16 116.3 13.2 151 40-257 2-155 (161)
117 PLN03118 Rab family protein; P 99.4 5.9E-12 1.3E-16 123.4 12.7 161 38-265 14-178 (211)
118 cd00881 GTP_translation_factor 99.4 4.2E-12 9E-17 121.3 11.3 104 139-257 61-180 (189)
119 cd01893 Miro1 Miro1 subfamily. 99.4 6.1E-12 1.3E-16 118.3 12.0 149 40-257 2-157 (166)
120 cd04177 RSR1 RSR1 subgroup. R 99.4 5.2E-12 1.1E-16 119.0 11.4 153 40-259 3-159 (168)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.3 5.4E-12 1.2E-16 118.4 11.4 105 139-257 49-162 (167)
122 cd04149 Arf6 Arf6 subfamily. 99.3 3.8E-12 8.3E-17 120.2 10.4 150 37-258 8-164 (168)
123 PRK09518 bifunctional cytidyla 99.3 1.4E-11 3E-16 141.6 16.9 164 37-260 449-617 (712)
124 cd04104 p47_IIGP_like p47 (47- 99.3 7.9E-12 1.7E-16 121.2 12.7 120 39-221 2-121 (197)
125 cd04159 Arl10_like Arl10-like 99.3 1.2E-11 2.7E-16 114.0 13.4 147 40-257 1-154 (159)
126 TIGR02528 EutP ethanolamine ut 99.3 7.8E-12 1.7E-16 114.2 11.7 99 143-256 38-137 (142)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.3 7.1E-12 1.5E-16 116.5 11.3 105 139-257 42-153 (158)
128 cd04137 RheB Rheb (Ras Homolog 99.3 1E-11 2.2E-16 118.3 12.3 156 40-263 3-162 (180)
129 cd01876 YihA_EngB The YihA (En 99.3 5.6E-12 1.2E-16 117.5 10.3 155 40-257 1-164 (170)
130 cd01853 Toc34_like Toc34-like 99.3 2.3E-11 4.9E-16 121.8 14.8 129 37-224 30-166 (249)
131 cd04158 ARD1 ARD1 subfamily. 99.3 1.1E-11 2.4E-16 116.9 11.9 112 139-264 42-161 (169)
132 cd04132 Rho4_like Rho4-like su 99.3 1.2E-11 2.7E-16 118.5 12.2 158 40-264 2-167 (187)
133 cd01874 Cdc42 Cdc42 subfamily. 99.3 7.8E-12 1.7E-16 118.9 10.5 151 39-258 2-169 (175)
134 cd00879 Sar1 Sar1 subfamily. 99.3 2E-11 4.4E-16 117.3 13.5 151 37-259 18-186 (190)
135 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.3E-11 2.9E-16 117.1 12.0 150 38-258 15-170 (174)
136 cd04128 Spg1 Spg1p. Spg1p (se 99.3 1.4E-11 3E-16 118.0 12.2 155 40-261 2-163 (182)
137 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 1.5E-11 3.3E-16 121.8 12.8 158 36-261 11-185 (232)
138 TIGR00991 3a0901s02IAP34 GTP-b 99.3 4.8E-11 1E-15 121.2 16.4 140 11-222 21-168 (313)
139 smart00178 SAR Sar1p-like memb 99.3 3.2E-11 6.9E-16 115.6 14.3 152 37-259 16-180 (184)
140 PLN03071 GTP-binding nuclear p 99.3 8.8E-12 1.9E-16 123.0 10.5 158 37-263 12-171 (219)
141 cd04150 Arf1_5_like Arf1-Arf5- 99.3 1.2E-11 2.5E-16 115.7 10.8 105 139-257 43-154 (159)
142 cd00157 Rho Rho (Ras homology) 99.3 4.7E-12 1E-16 119.1 8.0 103 140-256 48-165 (171)
143 cd04126 Rab20 Rab20 subfamily. 99.3 1.9E-11 4.1E-16 120.4 12.3 111 40-221 2-114 (220)
144 cd01891 TypA_BipA TypA (tyrosi 99.3 3.3E-11 7.1E-16 116.5 13.9 100 139-253 64-171 (194)
145 smart00174 RHO Rho (Ras homolo 99.3 6.2E-12 1.4E-16 118.9 8.6 105 140-258 46-166 (174)
146 cd04148 RGK RGK subfamily. Th 99.3 4.4E-11 9.5E-16 118.2 14.9 111 139-264 49-163 (221)
147 cd04146 RERG_RasL11_like RERG/ 99.3 1E-11 2.2E-16 116.6 9.5 108 140-259 47-159 (165)
148 cd04161 Arl2l1_Arl13_like Arl2 99.3 3.5E-11 7.6E-16 113.4 13.0 71 139-223 42-116 (167)
149 cd00877 Ran Ran (Ras-related n 99.3 2E-11 4.3E-16 115.0 10.9 108 140-263 49-158 (166)
150 cd04147 Ras_dva Ras-dva subfam 99.3 2.5E-11 5.5E-16 117.7 11.9 110 140-262 47-161 (198)
151 cd04143 Rhes_like Rhes_like su 99.3 3.6E-11 7.8E-16 120.6 13.4 154 40-261 2-168 (247)
152 smart00177 ARF ARF-like small 99.3 1.9E-11 4.2E-16 116.1 10.9 106 139-259 56-169 (175)
153 PTZ00133 ADP-ribosylation fact 99.3 4.3E-11 9.3E-16 114.5 13.3 108 139-261 60-175 (182)
154 PF04548 AIG1: AIG1 family; I 99.3 1.2E-11 2.7E-16 121.2 9.7 126 40-224 2-133 (212)
155 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 2.9E-11 6.3E-16 113.6 11.7 113 40-223 1-115 (164)
156 cd01892 Miro2 Miro2 subfamily. 99.3 1.6E-11 3.6E-16 115.9 9.9 153 37-259 3-161 (169)
157 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 2.4E-11 5.2E-16 116.3 10.9 152 39-258 6-174 (182)
158 cd04133 Rop_like Rop subfamily 99.3 1.7E-11 3.7E-16 116.6 9.6 153 40-260 3-169 (176)
159 PF10662 PduV-EutP: Ethanolami 99.3 2.5E-11 5.4E-16 109.6 9.8 98 144-258 40-140 (143)
160 PLN00223 ADP-ribosylation fact 99.3 9.8E-11 2.1E-15 112.0 14.5 108 139-261 60-175 (181)
161 KOG0448 Mitofusin 1 GTPase, in 99.3 6.2E-10 1.3E-14 120.5 21.9 184 10-229 94-283 (749)
162 cd04131 Rnd Rnd subfamily. Th 99.3 2.8E-11 6.2E-16 115.4 10.5 114 40-221 3-119 (178)
163 KOG0092 GTPase Rab5/YPT51 and 99.2 5.3E-12 1.1E-16 117.0 4.9 160 39-265 6-168 (200)
164 cd01870 RhoA_like RhoA-like su 99.2 4.5E-11 9.7E-16 113.1 11.2 116 39-222 2-120 (175)
165 cd04134 Rho3 Rho3 subfamily. 99.2 2.7E-11 5.9E-16 116.6 9.8 108 140-261 48-171 (189)
166 cd01871 Rac1_like Rac1-like su 99.2 4.3E-11 9.4E-16 113.7 10.9 151 40-258 3-169 (174)
167 cd01896 DRG The developmentall 99.2 7.4E-11 1.6E-15 117.4 12.5 24 40-63 2-25 (233)
168 cd01889 SelB_euk SelB subfamil 99.2 8.2E-11 1.8E-15 113.5 12.3 105 139-260 67-182 (192)
169 cd01875 RhoG RhoG subfamily. 99.2 6.9E-11 1.5E-15 114.0 11.8 155 39-261 4-174 (191)
170 cd04155 Arl3 Arl3 subfamily. 99.2 7.5E-11 1.6E-15 111.4 11.8 150 37-258 13-169 (173)
171 TIGR00487 IF-2 translation ini 99.2 7E-11 1.5E-15 131.7 13.4 155 35-258 84-244 (587)
172 TIGR00491 aIF-2 translation in 99.2 9.5E-11 2.1E-15 130.4 14.4 133 37-221 3-135 (590)
173 cd04166 CysN_ATPS CysN_ATPS su 99.2 1E-10 2.3E-15 114.4 12.5 114 125-255 63-185 (208)
174 cd04135 Tc10 TC10 subfamily. 99.2 3.9E-11 8.5E-16 113.4 9.1 104 140-257 48-167 (174)
175 CHL00189 infB translation init 99.2 9.6E-11 2.1E-15 132.5 13.7 160 34-259 240-405 (742)
176 KOG0095 GTPase Rab30, small G 99.2 5.2E-11 1.1E-15 105.1 8.5 123 36-224 5-129 (213)
177 TIGR00437 feoB ferrous iron tr 99.2 5.7E-11 1.2E-15 133.1 11.1 110 140-261 41-152 (591)
178 PF00009 GTP_EFTU: Elongation 99.2 2E-11 4.2E-16 117.5 6.4 70 136-220 66-135 (188)
179 cd04130 Wrch_1 Wrch-1 subfamil 99.2 5.6E-11 1.2E-15 112.5 9.5 104 140-257 48-167 (173)
180 cd00882 Ras_like_GTPase Ras-li 99.2 9.8E-11 2.1E-15 106.1 10.6 102 139-254 44-150 (157)
181 PF00071 Ras: Ras family; Int 99.2 5.4E-11 1.2E-15 111.0 9.0 153 40-258 1-155 (162)
182 KOG1954 Endocytosis/signaling 99.2 5.3E-11 1.2E-15 119.9 9.4 169 36-223 56-227 (532)
183 TIGR00231 small_GTP small GTP- 99.2 1.4E-10 3E-15 106.4 11.6 29 39-68 2-30 (161)
184 PF05049 IIGP: Interferon-indu 99.2 8.7E-11 1.9E-15 122.4 10.7 133 6-219 16-153 (376)
185 cd04165 GTPBP1_like GTPBP1-lik 99.2 1.2E-10 2.6E-15 115.1 11.0 76 134-223 78-154 (224)
186 smart00176 RAN Ran (Ras-relate 99.2 8.9E-11 1.9E-15 114.0 9.7 110 139-264 43-154 (200)
187 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 1.8E-10 3.8E-15 113.6 11.4 115 40-222 3-120 (222)
188 TIGR00475 selB selenocysteine- 99.2 2.1E-10 4.5E-15 128.4 12.8 108 140-264 50-166 (581)
189 PRK05306 infB translation init 99.1 2.1E-10 4.6E-15 130.9 12.7 154 35-258 287-446 (787)
190 cd04102 RabL3 RabL3 (Rab-like3 99.1 9E-10 2E-14 107.0 15.2 100 140-252 54-178 (202)
191 KOG1489 Predicted GTP-binding 99.1 8.5E-11 1.8E-15 116.9 8.0 158 37-257 195-360 (366)
192 cd01888 eIF2_gamma eIF2-gamma 99.1 3.6E-10 7.8E-15 110.1 12.1 106 140-260 83-195 (203)
193 PRK09602 translation-associate 99.1 1.4E-09 3E-14 116.0 17.3 112 39-187 2-113 (396)
194 cd01899 Ygr210 Ygr210 subfamil 99.1 1.3E-09 2.9E-14 112.7 16.7 110 41-187 1-110 (318)
195 cd01850 CDC_Septin CDC/Septin. 99.1 5.2E-10 1.1E-14 114.0 13.4 137 40-223 6-159 (276)
196 KOG0098 GTPase Rab2, small G p 99.1 2.5E-10 5.5E-15 105.0 9.9 156 36-257 4-161 (216)
197 COG0699 Predicted GTPases (dyn 99.1 1E-08 2.2E-13 114.8 24.6 450 90-585 3-518 (546)
198 KOG0093 GTPase Rab3, small G p 99.1 1.9E-10 4.2E-15 101.5 8.2 122 37-224 20-143 (193)
199 cd01873 RhoBTB RhoBTB subfamil 99.1 5.4E-10 1.2E-14 108.1 10.5 103 139-257 65-189 (195)
200 PRK10512 selenocysteinyl-tRNA- 99.1 5.9E-10 1.3E-14 125.3 11.6 111 137-262 48-164 (614)
201 cd01884 EF_Tu EF-Tu subfamily. 99.1 6.4E-10 1.4E-14 107.5 10.3 71 137-222 62-133 (195)
202 cd04129 Rho2 Rho2 subfamily. 99.1 5.9E-10 1.3E-14 107.1 9.8 107 140-260 49-169 (187)
203 TIGR01393 lepA GTP-binding pro 99.1 7.9E-10 1.7E-14 123.9 12.0 168 38-260 3-176 (595)
204 PRK04004 translation initiatio 99.1 1.4E-09 3.1E-14 121.5 13.9 66 140-220 71-136 (586)
205 cd04105 SR_beta Signal recogni 99.1 2.2E-09 4.8E-14 104.6 13.4 72 139-223 47-125 (203)
206 COG0536 Obg Predicted GTPase [ 99.0 5.2E-10 1.1E-14 112.8 8.8 166 40-266 161-335 (369)
207 cd01886 EF-G Elongation factor 99.0 1.6E-09 3.6E-14 109.9 11.8 69 138-221 62-130 (270)
208 COG1100 GTPase SAR1 and relate 99.0 2.8E-09 6E-14 104.8 13.1 118 39-224 6-128 (219)
209 KOG1490 GTP-binding protein CR 99.0 5E-10 1.1E-14 117.2 7.9 160 4-223 134-297 (620)
210 TIGR00993 3a0901s04IAP86 chlor 99.0 2.8E-09 6.1E-14 116.6 13.6 125 39-222 119-251 (763)
211 cd04168 TetM_like Tet(M)-like 99.0 1.8E-09 3.9E-14 107.7 10.8 70 138-222 62-131 (237)
212 KOG0394 Ras-related GTPase [Ge 99.0 4.1E-10 8.8E-15 103.5 5.5 161 36-262 7-176 (210)
213 cd04103 Centaurin_gamma Centau 99.0 1.7E-09 3.6E-14 101.1 9.7 102 140-259 47-154 (158)
214 PRK12317 elongation factor 1-a 99.0 1.8E-09 3.9E-14 117.2 11.1 103 138-255 82-196 (425)
215 cd04169 RF3 RF3 subfamily. Pe 99.0 2.9E-09 6.4E-14 108.0 12.0 70 138-222 69-138 (267)
216 KOG0091 GTPase Rab39, small G 99.0 9.6E-10 2.1E-14 98.8 7.0 161 37-262 7-171 (213)
217 KOG0080 GTPase Rab18, small G 99.0 8E-10 1.7E-14 99.1 6.0 157 36-261 9-171 (209)
218 PRK05433 GTP-binding protein L 99.0 4.4E-09 9.4E-14 118.1 13.1 169 37-260 6-180 (600)
219 cd04170 EF-G_bact Elongation f 99.0 5.7E-09 1.2E-13 106.2 12.9 70 138-222 62-131 (268)
220 KOG0079 GTP-binding protein H- 98.9 1.3E-09 2.8E-14 96.4 6.3 122 35-223 5-128 (198)
221 cd01885 EF2 EF2 (for archaea a 98.9 4.2E-09 9.1E-14 103.7 10.6 67 139-220 72-138 (222)
222 cd01883 EF1_alpha Eukaryotic e 98.9 1.9E-09 4E-14 106.4 8.1 113 125-253 63-194 (219)
223 cd04167 Snu114p Snu114p subfam 98.9 5.5E-09 1.2E-13 102.6 11.0 67 139-220 70-136 (213)
224 KOG0087 GTPase Rab11/YPT3, sma 98.9 4.2E-09 9E-14 99.3 8.6 155 34-254 10-166 (222)
225 PF00025 Arf: ADP-ribosylation 98.9 4.5E-09 9.8E-14 99.9 8.8 150 38-259 14-171 (175)
226 cd01900 YchF YchF subfamily. 98.9 5.2E-09 1.1E-13 105.9 9.3 99 41-186 1-102 (274)
227 KOG0086 GTPase Rab4, small G p 98.9 6.9E-09 1.5E-13 92.2 8.5 156 33-254 4-161 (214)
228 PTZ00258 GTP-binding protein; 98.9 9.2E-09 2E-13 108.6 11.1 104 36-186 19-125 (390)
229 PTZ00132 GTP-binding nuclear p 98.9 2.1E-08 4.5E-13 98.5 12.7 106 140-261 58-165 (215)
230 CHL00071 tufA elongation facto 98.9 1.1E-08 2.3E-13 110.5 11.2 71 138-223 73-144 (409)
231 PLN00023 GTP-binding protein; 98.9 9.9E-09 2.1E-13 105.1 10.3 70 140-222 83-166 (334)
232 TIGR03680 eif2g_arch translati 98.9 9.8E-09 2.1E-13 110.6 10.7 106 139-259 79-191 (406)
233 PF08477 Miro: Miro-like prote 98.8 5E-09 1.1E-13 92.5 6.6 24 40-63 1-24 (119)
234 TIGR02034 CysN sulfate adenyly 98.8 1.5E-08 3.2E-13 109.2 11.1 102 137-254 77-187 (406)
235 PRK05124 cysN sulfate adenylyl 98.8 6.4E-08 1.4E-12 106.1 15.6 104 136-255 103-216 (474)
236 PRK09601 GTP-binding protein Y 98.8 1.9E-08 4.1E-13 105.1 10.6 101 39-186 3-106 (364)
237 TIGR00483 EF-1_alpha translati 98.8 2.3E-08 4.9E-13 108.7 11.7 103 138-255 83-198 (426)
238 TIGR01394 TypA_BipA GTP-bindin 98.8 1.6E-08 3.5E-13 113.2 10.2 70 138-222 62-131 (594)
239 COG1163 DRG Predicted GTPase [ 98.8 7.5E-09 1.6E-13 103.7 6.5 89 38-187 63-151 (365)
240 PRK05506 bifunctional sulfate 98.8 4.1E-08 8.8E-13 111.8 13.4 102 137-254 101-211 (632)
241 COG2229 Predicted GTPase [Gene 98.8 1E-07 2.2E-12 88.4 12.8 156 37-253 9-167 (187)
242 TIGR02836 spore_IV_A stage IV 98.7 1.3E-07 2.7E-12 98.6 13.9 147 40-221 19-194 (492)
243 PRK09435 membrane ATPase/prote 98.7 5.6E-08 1.2E-12 100.9 11.4 104 138-264 147-260 (332)
244 PRK12739 elongation factor G; 98.7 4.9E-08 1.1E-12 112.1 11.9 134 37-222 7-140 (691)
245 TIGR00484 EF-G translation elo 98.7 4.3E-08 9.3E-13 112.6 11.2 134 37-222 9-142 (689)
246 PRK00741 prfC peptide chain re 98.7 9.1E-08 2E-12 105.8 13.1 138 37-222 9-146 (526)
247 PRK12736 elongation factor Tu; 98.7 7.3E-08 1.6E-12 103.5 12.0 70 138-222 73-143 (394)
248 PLN03126 Elongation factor Tu; 98.7 6.6E-08 1.4E-12 105.6 11.6 70 138-222 142-212 (478)
249 PLN03127 Elongation factor Tu; 98.7 3.8E-08 8.2E-13 106.9 9.6 82 125-222 110-192 (447)
250 TIGR00485 EF-Tu translation el 98.7 4.9E-08 1.1E-12 104.9 10.3 70 138-222 73-143 (394)
251 PRK04000 translation initiatio 98.7 9.3E-08 2E-12 103.1 12.3 103 140-258 85-195 (411)
252 PRK10218 GTP-binding protein; 98.7 9.7E-08 2.1E-12 107.0 12.5 70 138-222 66-135 (607)
253 PRK00007 elongation factor G; 98.7 8.3E-08 1.8E-12 110.2 12.2 135 37-223 9-143 (693)
254 PRK12735 elongation factor Tu; 98.7 9.3E-08 2E-12 102.7 11.9 71 137-222 72-143 (396)
255 COG4917 EutP Ethanolamine util 98.7 3.8E-08 8.3E-13 85.0 6.6 134 40-257 3-139 (148)
256 TIGR00503 prfC peptide chain r 98.7 9.9E-08 2.2E-12 105.6 11.9 69 138-221 78-146 (527)
257 KOG0097 GTPase Rab14, small G 98.7 5.8E-08 1.2E-12 85.1 7.7 154 35-254 8-163 (215)
258 PRK00049 elongation factor Tu; 98.7 6.9E-08 1.5E-12 103.7 9.7 69 138-221 73-142 (396)
259 KOG0075 GTP-binding ADP-ribosy 98.7 4.6E-08 1E-12 86.7 6.6 103 138-254 63-172 (186)
260 COG0532 InfB Translation initi 98.6 2.4E-07 5.2E-12 99.2 12.7 155 37-262 4-168 (509)
261 KOG0073 GTP-binding ADP-ribosy 98.6 3.5E-07 7.5E-12 82.9 11.7 155 39-265 17-179 (185)
262 PF09439 SRPRB: Signal recogni 98.6 8.4E-08 1.8E-12 90.7 8.1 119 37-223 2-128 (181)
263 KOG0081 GTPase Rab27, small G 98.6 1.4E-08 3.1E-13 90.8 2.5 108 140-260 67-177 (219)
264 PTZ00327 eukaryotic translatio 98.6 1.9E-07 4.1E-12 101.3 11.5 102 140-257 117-226 (460)
265 KOG0395 Ras-related GTPase [Ge 98.6 1.1E-07 2.4E-12 91.9 8.6 155 38-260 3-161 (196)
266 TIGR00490 aEF-2 translation el 98.6 1.4E-07 3E-12 108.7 10.8 70 137-221 83-152 (720)
267 KOG2486 Predicted GTPase [Gene 98.6 1.6E-07 3.5E-12 92.3 8.8 164 35-257 133-309 (320)
268 PF00735 Septin: Septin; Inte 98.6 1.3E-07 2.9E-12 96.4 8.3 139 40-224 6-159 (281)
269 PRK13351 elongation factor G; 98.6 3.3E-07 7.3E-12 105.5 11.8 70 138-222 71-140 (687)
270 KOG1145 Mitochondrial translat 98.5 6.3E-07 1.4E-11 95.3 12.4 154 34-258 149-310 (683)
271 PLN00043 elongation factor 1-a 98.5 4.3E-07 9.3E-12 98.8 11.4 102 136-253 81-202 (447)
272 cd01882 BMS1 Bms1. Bms1 is an 98.5 5.7E-07 1.2E-11 89.0 10.9 70 136-223 79-149 (225)
273 TIGR00750 lao LAO/AO transport 98.5 2.6E-06 5.7E-11 88.1 16.2 103 138-262 125-236 (300)
274 PTZ00416 elongation factor 2; 98.5 7.1E-07 1.5E-11 104.3 12.7 66 140-220 92-157 (836)
275 PLN00116 translation elongatio 98.5 8.7E-07 1.9E-11 103.8 13.3 67 139-220 97-163 (843)
276 KOG0410 Predicted GTP binding 98.5 3.9E-07 8.4E-12 91.2 8.5 156 34-258 174-335 (410)
277 PTZ00141 elongation factor 1- 98.5 3.9E-07 8.5E-12 99.1 9.0 102 136-253 81-202 (446)
278 PRK07560 elongation factor EF- 98.5 6.9E-07 1.5E-11 103.3 11.2 133 37-220 19-152 (731)
279 PTZ00099 rab6; Provisional 98.4 4.7E-07 1E-11 86.1 7.5 118 139-269 28-147 (176)
280 cd01858 NGP_1 NGP-1. Autoanti 98.4 3.3E-07 7.2E-12 85.4 5.9 28 39-66 103-130 (157)
281 KOG0088 GTPase Rab21, small G 98.4 1.9E-07 4.1E-12 83.7 3.5 162 38-266 13-177 (218)
282 cd04178 Nucleostemin_like Nucl 98.4 4.8E-07 1E-11 85.6 6.4 30 38-67 117-146 (172)
283 cd01849 YlqF_related_GTPase Yl 98.4 6.1E-07 1.3E-11 83.5 7.0 39 37-75 99-138 (155)
284 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 6.1E-07 1.3E-11 82.0 6.6 25 39-63 84-108 (141)
285 cd01855 YqeH YqeH. YqeH is an 98.4 5.2E-07 1.1E-11 86.9 6.4 25 39-63 128-152 (190)
286 COG0012 Predicted GTPase, prob 98.4 6.8E-07 1.5E-11 92.2 6.8 106 39-187 3-108 (372)
287 KOG4252 GTP-binding protein [S 98.3 1.3E-07 2.8E-12 86.5 1.0 70 140-223 69-140 (246)
288 PRK12740 elongation factor G; 98.3 2E-06 4.3E-11 98.9 10.8 70 138-222 58-127 (668)
289 PRK13768 GTPase; Provisional 98.3 3.7E-06 8E-11 84.8 11.1 76 140-224 97-179 (253)
290 KOG0070 GTP-binding ADP-ribosy 98.3 1E-06 2.2E-11 81.9 6.3 149 40-261 19-175 (181)
291 KOG3883 Ras family small GTPas 98.3 9E-06 1.9E-10 72.8 11.6 97 140-249 60-160 (198)
292 KOG1491 Predicted GTP-binding 98.3 9.7E-07 2.1E-11 89.1 5.6 103 37-186 19-124 (391)
293 TIGR00092 GTP-binding protein 98.2 2.7E-06 5.8E-11 89.1 8.1 104 39-186 3-107 (368)
294 COG5019 CDC3 Septin family pro 98.2 7.3E-06 1.6E-10 84.1 10.9 83 140-224 82-179 (373)
295 TIGR03596 GTPase_YlqF ribosome 98.2 3.9E-06 8.4E-11 85.8 8.8 29 38-66 118-146 (276)
296 KOG1532 GTPase XAB1, interacts 98.2 6.3E-06 1.4E-10 80.9 9.5 153 37-223 18-197 (366)
297 KOG2655 Septin family protein 98.2 5.4E-06 1.2E-10 85.7 9.3 83 140-224 79-175 (366)
298 KOG1707 Predicted Ras related/ 98.2 4.8E-06 1E-10 89.5 9.1 118 40-225 11-133 (625)
299 COG5256 TEF1 Translation elong 98.2 9.8E-06 2.1E-10 84.3 11.0 102 138-254 83-201 (428)
300 cd01856 YlqF YlqF. Proteins o 98.2 7.4E-06 1.6E-10 77.5 9.1 27 37-63 114-140 (171)
301 cd01851 GBP Guanylate-binding 98.2 7.4E-06 1.6E-10 81.0 9.1 32 37-69 6-39 (224)
302 PF04670 Gtr1_RagA: Gtr1/RagA 98.1 7E-06 1.5E-10 81.1 8.6 120 40-223 1-127 (232)
303 KOG0083 GTPase Rab26/Rab37, sm 98.1 4.3E-07 9.3E-12 79.1 0.0 109 139-260 46-156 (192)
304 COG1161 Predicted GTPases [Gen 98.1 1.6E-06 3.5E-11 90.3 4.3 31 40-75 134-164 (322)
305 PRK11889 flhF flagellar biosyn 98.1 2.6E-05 5.7E-10 81.8 12.6 156 38-231 241-401 (436)
306 COG1703 ArgK Putative periplas 98.1 0.00011 2.4E-09 73.7 16.4 24 37-60 50-73 (323)
307 TIGR01425 SRP54_euk signal rec 98.1 2.1E-05 4.6E-10 84.2 12.2 80 139-229 182-261 (429)
308 KOG0090 Signal recognition par 98.1 1E-05 2.2E-10 76.8 8.6 71 141-224 83-162 (238)
309 PRK09563 rbgA GTPase YlqF; Rev 98.1 4.4E-06 9.5E-11 85.9 6.5 28 37-64 120-147 (287)
310 PF03029 ATP_bind_1: Conserved 98.1 3.9E-06 8.5E-11 83.6 4.8 19 43-61 1-19 (238)
311 PRK12289 GTPase RsgA; Reviewed 98.0 8.9E-06 1.9E-10 85.5 7.3 24 40-63 174-197 (352)
312 PF03308 ArgK: ArgK protein; 98.0 2.1E-06 4.5E-11 84.8 2.4 25 37-61 28-52 (266)
313 KOG0393 Ras-related small GTPa 98.0 2.9E-06 6.2E-11 80.8 3.0 152 39-257 5-172 (198)
314 PRK12288 GTPase RsgA; Reviewed 98.0 1.5E-05 3.2E-10 83.8 8.5 24 40-63 207-230 (347)
315 KOG1547 Septin CDC10 and relat 98.0 1.9E-05 4E-10 76.2 8.2 78 140-221 104-198 (336)
316 TIGR00157 ribosome small subun 98.0 1.9E-05 4.1E-10 79.2 8.3 25 39-63 121-145 (245)
317 PRK14845 translation initiatio 98.0 5.2E-05 1.1E-09 89.3 12.9 68 139-221 525-592 (1049)
318 PRK13796 GTPase YqeH; Provisio 98.0 1.4E-05 3E-10 84.9 7.3 24 39-62 161-184 (365)
319 KOG0076 GTP-binding ADP-ribosy 98.0 1.3E-05 2.7E-10 73.6 5.7 111 139-262 68-185 (197)
320 KOG0071 GTP-binding ADP-ribosy 98.0 3.3E-05 7.2E-10 68.3 8.0 145 40-257 19-171 (180)
321 PF03193 DUF258: Protein of un 97.9 8.2E-06 1.8E-10 75.7 4.3 25 39-63 36-60 (161)
322 PRK14723 flhF flagellar biosyn 97.9 5.4E-05 1.2E-09 86.1 11.6 152 40-231 187-347 (767)
323 KOG1486 GTP-binding protein DR 97.9 6.7E-06 1.4E-10 79.6 3.7 24 39-62 63-86 (364)
324 TIGR03597 GTPase_YqeH ribosome 97.9 1.6E-05 3.4E-10 84.4 6.3 24 39-62 155-178 (360)
325 PRK14974 cell division protein 97.9 3.4E-05 7.5E-10 80.5 8.6 82 139-231 222-303 (336)
326 KOG1424 Predicted GTP-binding 97.9 7.5E-06 1.6E-10 86.9 3.7 33 38-75 314-346 (562)
327 cd03112 CobW_like The function 97.9 6.6E-05 1.4E-09 70.1 9.7 23 39-61 1-23 (158)
328 cd03114 ArgK-like The function 97.9 9.4E-05 2E-09 68.2 10.3 21 41-61 2-22 (148)
329 cd01859 MJ1464 MJ1464. This f 97.9 6.5E-05 1.4E-09 69.7 9.1 26 38-63 101-126 (156)
330 PRK14722 flhF flagellar biosyn 97.9 2.5E-05 5.4E-10 82.4 6.9 23 39-61 138-160 (374)
331 PRK06731 flhF flagellar biosyn 97.9 0.00019 4.1E-09 72.7 12.7 81 139-231 154-235 (270)
332 COG0480 FusA Translation elong 97.8 3.1E-05 6.7E-10 87.8 7.7 136 37-223 9-144 (697)
333 PRK10416 signal recognition pa 97.8 7.9E-05 1.7E-09 77.4 10.0 83 139-230 196-282 (318)
334 COG1217 TypA Predicted membran 97.8 8.2E-05 1.8E-09 78.2 9.5 134 37-224 4-137 (603)
335 PRK12726 flagellar biosynthesi 97.8 9.9E-05 2.1E-09 77.3 9.8 152 38-231 206-366 (407)
336 TIGR00101 ureG urease accessor 97.8 0.00012 2.6E-09 71.0 9.8 48 211-260 141-192 (199)
337 KOG0462 Elongation factor-type 97.8 8.7E-05 1.9E-09 79.5 9.2 170 36-257 58-228 (650)
338 TIGR00073 hypB hydrogenase acc 97.8 6.8E-05 1.5E-09 73.3 7.9 25 37-61 21-45 (207)
339 PRK00098 GTPase RsgA; Reviewed 97.8 9.7E-05 2.1E-09 76.3 9.1 24 39-62 165-188 (298)
340 PF00448 SRP54: SRP54-type pro 97.7 2.8E-05 6.1E-10 75.1 4.3 82 139-231 83-164 (196)
341 PRK12727 flagellar biosynthesi 97.7 8.9E-05 1.9E-09 80.8 8.4 24 38-61 350-373 (559)
342 PRK05703 flhF flagellar biosyn 97.7 0.00037 8.1E-09 75.4 13.1 83 139-231 299-381 (424)
343 cd01854 YjeQ_engC YjeQ/EngC. 97.7 0.00012 2.6E-09 75.3 8.8 25 39-63 162-186 (287)
344 PRK14721 flhF flagellar biosyn 97.7 0.00018 3.8E-09 77.2 10.3 82 139-231 269-350 (420)
345 COG1162 Predicted GTPases [Gen 97.7 0.0001 2.2E-09 74.7 7.2 22 40-61 166-187 (301)
346 PRK12724 flagellar biosynthesi 97.6 0.00036 7.7E-09 74.3 10.9 84 139-231 299-383 (432)
347 KOG0074 GTP-binding ADP-ribosy 97.6 0.00036 7.7E-09 62.0 8.5 115 38-222 17-134 (185)
348 KOG1143 Predicted translation 97.5 0.00019 4.1E-09 73.4 7.1 146 40-224 169-320 (591)
349 TIGR00064 ftsY signal recognit 97.5 0.0017 3.7E-08 66.1 14.1 84 139-231 154-241 (272)
350 KOG1144 Translation initiation 97.5 0.0005 1.1E-08 75.9 10.2 130 37-220 474-605 (1064)
351 KOG0458 Elongation factor 1 al 97.5 0.00032 6.9E-09 75.9 8.5 103 136-253 251-371 (603)
352 COG3640 CooC CO dehydrogenase 97.5 0.0024 5.1E-08 62.2 13.3 87 140-250 134-222 (255)
353 KOG0468 U5 snRNP-specific prot 97.5 0.00056 1.2E-08 74.7 10.0 134 37-220 127-262 (971)
354 PRK00771 signal recognition pa 97.5 0.00028 6E-09 76.3 7.8 80 140-230 176-255 (437)
355 TIGR03348 VI_IcmF type VI secr 97.5 0.00083 1.8E-08 81.8 12.7 57 6-67 82-138 (1169)
356 PRK10867 signal recognition pa 97.4 0.00083 1.8E-08 72.5 11.1 81 139-230 183-263 (433)
357 PRK12723 flagellar biosynthesi 97.4 0.0014 3.1E-08 69.7 12.8 83 139-231 254-336 (388)
358 cd03115 SRP The signal recogni 97.4 0.00037 8E-09 65.9 7.4 80 139-229 82-161 (173)
359 COG3276 SelB Selenocysteine-sp 97.4 0.00075 1.6E-08 71.1 9.9 108 140-263 50-161 (447)
360 COG0481 LepA Membrane GTPase L 97.4 0.0005 1.1E-08 72.7 8.3 171 37-260 8-182 (603)
361 COG4108 PrfC Peptide chain rel 97.3 0.00059 1.3E-08 71.5 7.7 70 138-222 79-148 (528)
362 COG1419 FlhF Flagellar GTP-bin 97.3 0.001 2.2E-08 70.0 8.9 153 38-231 203-362 (407)
363 TIGR00959 ffh signal recogniti 97.3 0.003 6.4E-08 68.2 12.7 81 139-230 182-262 (428)
364 COG5257 GCD11 Translation init 97.3 0.00068 1.5E-08 68.4 7.1 171 40-259 12-197 (415)
365 COG0050 TufB GTPases - transla 97.3 0.0013 2.7E-08 65.7 8.8 130 40-223 14-144 (394)
366 KOG0072 GTP-binding ADP-ribosy 97.2 0.0012 2.7E-08 58.9 7.6 110 138-262 60-177 (182)
367 PRK06995 flhF flagellar biosyn 97.2 0.0015 3.2E-08 71.3 9.9 23 39-61 257-279 (484)
368 COG5192 BMS1 GTP-binding prote 97.2 0.0012 2.6E-08 70.7 8.7 72 135-224 108-180 (1077)
369 KOG2484 GTPase [General functi 97.1 0.00041 8.8E-09 71.9 4.2 30 39-68 253-282 (435)
370 COG2895 CysN GTPases - Sulfate 97.1 0.0025 5.5E-08 65.2 9.7 178 37-252 5-191 (431)
371 KOG3859 Septins (P-loop GTPase 97.1 0.001 2.2E-08 65.7 6.2 134 39-223 43-192 (406)
372 KOG2485 Conserved ATP/GTP bind 97.1 0.0013 2.8E-08 66.3 7.2 25 37-61 142-166 (335)
373 KOG0077 Vesicle coat complex C 96.9 0.0035 7.6E-08 57.4 7.9 115 37-223 19-137 (193)
374 PRK10463 hydrogenase nickel in 96.9 0.019 4.1E-07 58.6 13.5 25 37-61 103-127 (290)
375 KOG0461 Selenocysteine-specifi 96.8 0.009 1.9E-07 60.9 10.3 90 140-249 70-174 (522)
376 KOG1487 GTP-binding protein DR 96.8 0.001 2.3E-08 65.1 3.6 30 39-69 60-89 (358)
377 COG0541 Ffh Signal recognition 96.7 0.0099 2.1E-07 62.9 10.6 78 139-228 182-260 (451)
378 KOG1673 Ras GTPases [General f 96.5 0.0035 7.5E-08 56.7 4.4 113 40-220 22-137 (205)
379 KOG1534 Putative transcription 96.4 0.0085 1.8E-07 57.2 6.9 21 40-60 5-25 (273)
380 TIGR00157 ribosome small subun 96.4 0.0024 5.3E-08 64.0 3.4 95 162-257 22-116 (245)
381 KOG2423 Nucleolar GTPase [Gene 96.4 0.0032 6.9E-08 65.1 4.2 24 40-63 309-332 (572)
382 KOG0780 Signal recognition par 96.4 0.0087 1.9E-07 62.1 7.0 76 138-226 182-259 (483)
383 cd01859 MJ1464 MJ1464. This f 96.3 0.0052 1.1E-07 56.9 5.1 92 166-261 2-93 (156)
384 KOG3886 GTP-binding protein [S 96.3 0.0045 9.8E-08 59.8 4.5 77 140-225 53-134 (295)
385 PRK01889 GTPase RsgA; Reviewed 96.3 0.0069 1.5E-07 64.2 6.3 24 39-62 196-219 (356)
386 KOG2203 GTP-binding protein [G 96.2 0.006 1.3E-07 65.6 5.2 27 37-63 36-62 (772)
387 cd01855 YqeH YqeH. YqeH is an 96.1 0.019 4.2E-07 55.0 7.7 94 164-261 22-122 (190)
388 KOG0467 Translation elongation 96.1 0.01 2.2E-07 66.3 6.3 129 37-219 8-136 (887)
389 TIGR02868 CydC thiol reductant 96.1 0.018 3.9E-07 64.5 8.5 29 40-70 363-391 (529)
390 COG4988 CydD ABC-type transpor 96.0 0.028 6.1E-07 61.6 9.3 28 40-69 349-376 (559)
391 KOG0463 GTP-binding protein GP 95.9 0.0057 1.2E-07 62.8 3.3 76 132-223 211-289 (641)
392 PRK11537 putative GTP-binding 95.8 0.03 6.6E-07 58.3 8.3 25 37-61 3-27 (318)
393 COG1341 Predicted GTPase or GT 95.6 0.057 1.2E-06 56.9 9.4 25 37-61 72-96 (398)
394 COG1136 SalX ABC-type antimicr 95.6 0.01 2.2E-07 58.3 3.5 53 164-217 148-202 (226)
395 PRK12289 GTPase RsgA; Reviewed 95.6 0.014 3E-07 61.6 4.7 89 167-257 80-168 (352)
396 KOG0464 Elongation factor G [T 95.6 0.042 9.1E-07 57.3 7.9 135 37-223 36-170 (753)
397 PRK13695 putative NTPase; Prov 95.5 0.19 4.1E-06 47.4 11.9 22 40-61 2-23 (174)
398 KOG4181 Uncharacterized conser 95.5 0.072 1.6E-06 54.6 9.2 26 37-62 187-212 (491)
399 KOG2749 mRNA cleavage and poly 95.5 0.14 3E-06 52.9 11.0 38 37-80 102-139 (415)
400 COG3840 ThiQ ABC-type thiamine 95.5 0.012 2.7E-07 55.1 3.3 28 39-67 26-53 (231)
401 PF13555 AAA_29: P-loop contai 95.4 0.016 3.4E-07 44.8 3.1 23 39-61 24-46 (62)
402 smart00010 small_GTPase Small 95.4 0.052 1.1E-06 47.4 7.0 24 40-63 2-25 (124)
403 COG5258 GTPBP1 GTPase [General 95.3 0.022 4.8E-07 59.0 4.8 67 141-223 202-271 (527)
404 KOG0460 Mitochondrial translat 95.3 0.062 1.3E-06 55.0 7.9 133 37-223 51-186 (449)
405 cd00071 GMPK Guanosine monopho 95.2 0.017 3.6E-07 52.5 3.5 21 41-61 2-22 (137)
406 PRK00098 GTPase RsgA; Reviewed 95.2 0.0093 2E-07 61.7 1.7 82 174-256 78-159 (298)
407 cd01130 VirB11-like_ATPase Typ 95.1 0.017 3.7E-07 55.3 3.2 30 40-71 27-56 (186)
408 PF13521 AAA_28: AAA domain; P 95.0 0.014 2.9E-07 54.6 2.2 22 40-61 1-22 (163)
409 PF05879 RHD3: Root hair defec 95.0 0.022 4.7E-07 66.1 4.2 20 44-63 1-20 (742)
410 PF00005 ABC_tran: ABC transpo 94.9 0.019 4.2E-07 51.6 3.0 23 40-62 13-35 (137)
411 COG1116 TauB ABC-type nitrate/ 94.9 0.019 4E-07 56.8 3.0 23 40-62 31-53 (248)
412 COG4107 PhnK ABC-type phosphon 94.9 0.021 4.6E-07 53.1 3.1 31 40-72 34-64 (258)
413 TIGR02857 CydD thiol reductant 94.9 0.086 1.9E-06 59.1 8.7 22 40-61 350-371 (529)
414 PRK01889 GTPase RsgA; Reviewed 94.9 0.013 2.8E-07 62.2 1.9 78 174-254 110-187 (356)
415 TIGR02475 CobW cobalamin biosy 94.9 0.19 4E-06 53.0 10.5 25 37-61 3-27 (341)
416 KOG4423 GTP-binding protein-li 94.9 0.0025 5.5E-08 59.4 -3.0 152 36-253 23-183 (229)
417 TIGR03499 FlhF flagellar biosy 94.9 0.033 7.2E-07 57.1 4.8 23 39-61 195-217 (282)
418 PF03205 MobB: Molybdopterin g 94.7 0.022 4.7E-07 52.0 2.7 23 39-61 1-23 (140)
419 TIGR03796 NHPM_micro_ABC1 NHPM 94.7 0.12 2.6E-06 60.2 9.5 22 40-61 507-528 (710)
420 cd01858 NGP_1 NGP-1. Autoanti 94.7 0.059 1.3E-06 49.9 5.7 51 171-223 3-55 (157)
421 PRK11160 cysteine/glutathione 94.7 0.12 2.6E-06 58.6 9.2 22 40-61 368-389 (574)
422 COG1101 PhnK ABC-type uncharac 94.7 0.026 5.6E-07 54.4 3.1 22 40-61 34-55 (263)
423 TIGR03263 guanyl_kin guanylate 94.6 0.031 6.8E-07 52.9 3.7 22 40-61 3-24 (180)
424 PRK11174 cysteine/glutathione 94.6 0.13 2.8E-06 58.5 9.3 25 40-66 378-402 (588)
425 TIGR02788 VirB11 P-type DNA tr 94.6 0.056 1.2E-06 56.2 5.7 30 40-71 146-175 (308)
426 cd03225 ABC_cobalt_CbiO_domain 94.6 0.032 6.9E-07 54.4 3.7 29 40-70 29-57 (211)
427 KOG0057 Mitochondrial Fe/S clu 94.6 0.14 3.1E-06 55.7 8.8 57 164-222 493-551 (591)
428 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.6 0.032 6.8E-07 51.1 3.4 22 40-61 28-49 (144)
429 TIGR01360 aden_kin_iso1 adenyl 94.5 0.028 6E-07 53.5 3.0 23 37-59 2-24 (188)
430 cd03261 ABC_Org_Solvent_Resist 94.5 0.033 7.1E-07 55.4 3.6 29 40-70 28-56 (235)
431 PRK00300 gmk guanylate kinase; 94.5 0.032 6.9E-07 54.1 3.3 36 40-75 7-43 (205)
432 COG0552 FtsY Signal recognitio 94.5 0.19 4.2E-06 51.7 9.0 82 139-229 221-306 (340)
433 cd03264 ABC_drug_resistance_li 94.4 0.033 7.1E-07 54.3 3.4 29 40-70 27-55 (211)
434 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.034 7.4E-07 54.5 3.6 29 40-70 32-60 (218)
435 PRK13851 type IV secretion sys 94.4 0.051 1.1E-06 57.1 5.0 32 39-72 163-194 (344)
436 cd01849 YlqF_related_GTPase Yl 94.4 0.068 1.5E-06 49.4 5.3 77 178-257 1-78 (155)
437 TIGR01193 bacteriocin_ABC ABC- 94.4 0.13 2.9E-06 59.8 8.8 22 40-61 502-523 (708)
438 TIGR03797 NHPM_micro_ABC2 NHPM 94.4 0.16 3.4E-06 59.0 9.4 22 40-61 481-502 (686)
439 COG3523 IcmF Type VI protein s 94.4 0.22 4.8E-06 59.8 10.6 83 140-223 174-272 (1188)
440 TIGR00958 3a01208 Conjugate Tr 94.4 0.15 3.2E-06 59.4 9.1 22 40-61 509-530 (711)
441 TIGR01166 cbiO cobalt transpor 94.3 0.037 7.9E-07 53.1 3.4 22 40-61 20-41 (190)
442 PLN03232 ABC transporter C fam 94.3 0.23 4.9E-06 62.6 11.2 22 40-61 645-666 (1495)
443 cd03222 ABC_RNaseL_inhibitor T 94.3 0.038 8.2E-07 52.5 3.4 24 39-62 26-49 (177)
444 cd03224 ABC_TM1139_LivF_branch 94.3 0.039 8.5E-07 54.2 3.6 23 40-62 28-50 (222)
445 TIGR03375 type_I_sec_LssB type 94.3 0.16 3.4E-06 59.0 9.2 22 40-61 493-514 (694)
446 COG0194 Gmk Guanylate kinase [ 94.3 0.034 7.3E-07 52.5 2.9 36 40-75 6-41 (191)
447 cd03226 ABC_cobalt_CbiO_domain 94.2 0.041 8.8E-07 53.4 3.6 29 40-70 28-56 (205)
448 PRK14737 gmk guanylate kinase; 94.2 0.046 1E-06 52.4 3.8 23 39-61 5-27 (186)
449 cd03259 ABC_Carb_Solutes_like 94.2 0.041 9E-07 53.7 3.6 29 40-70 28-56 (213)
450 COG1132 MdlB ABC-type multidru 94.2 0.25 5.5E-06 55.8 10.5 23 39-61 356-378 (567)
451 TIGR00960 3a0501s02 Type II (G 94.2 0.042 9.1E-07 53.8 3.6 23 39-61 30-52 (216)
452 COG0523 Putative GTPases (G3E 94.2 0.23 4.9E-06 51.8 9.1 25 38-62 1-25 (323)
453 TIGR02673 FtsE cell division A 94.2 0.044 9.4E-07 53.5 3.7 22 40-61 30-51 (214)
454 cd03263 ABC_subfamily_A The AB 94.2 0.041 8.9E-07 54.0 3.5 22 40-61 30-51 (220)
455 cd03265 ABC_DrrA DrrA is the A 94.2 0.043 9.4E-07 53.9 3.6 22 40-61 28-49 (220)
456 PRK13541 cytochrome c biogenes 94.2 0.044 9.6E-07 52.8 3.6 23 40-62 28-50 (195)
457 cd03292 ABC_FtsE_transporter F 94.1 0.043 9.4E-07 53.5 3.6 28 40-69 29-56 (214)
458 cd03218 ABC_YhbG The ABC trans 94.1 0.044 9.6E-07 54.2 3.7 29 40-70 28-56 (232)
459 cd03269 ABC_putative_ATPase Th 94.1 0.044 9.6E-07 53.4 3.6 22 40-61 28-49 (210)
460 COG0410 LivF ABC-type branched 94.1 0.043 9.4E-07 53.5 3.4 29 40-70 31-59 (237)
461 cd03215 ABC_Carb_Monos_II This 94.1 0.046 1E-06 52.0 3.7 23 40-62 28-50 (182)
462 cd03258 ABC_MetN_methionine_tr 94.1 0.046 9.9E-07 54.2 3.7 29 40-70 33-61 (233)
463 PF13207 AAA_17: AAA domain; P 94.1 0.037 8.1E-07 48.5 2.7 22 40-61 1-22 (121)
464 PRK11629 lolD lipoprotein tran 94.1 0.044 9.6E-07 54.3 3.6 30 40-71 37-66 (233)
465 PRK13657 cyclic beta-1,2-gluca 94.1 0.16 3.5E-06 57.7 8.6 23 40-62 363-385 (588)
466 cd03229 ABC_Class3 This class 94.1 0.048 1E-06 51.7 3.6 22 40-61 28-49 (178)
467 cd03266 ABC_NatA_sodium_export 94.1 0.047 1E-06 53.5 3.6 29 40-70 33-61 (218)
468 PRK13651 cobalt transporter AT 94.0 0.045 9.8E-07 56.8 3.6 30 40-71 35-64 (305)
469 TIGR02315 ABC_phnC phosphonate 94.0 0.046 1E-06 54.5 3.6 22 40-61 30-51 (243)
470 cd03262 ABC_HisP_GlnQ_permease 94.0 0.049 1.1E-06 53.1 3.7 28 40-69 28-55 (213)
471 PRK13540 cytochrome c biogenes 94.0 0.05 1.1E-06 52.6 3.6 25 38-62 27-51 (200)
472 TIGR03596 GTPase_YlqF ribosome 94.0 0.12 2.5E-06 52.9 6.5 83 167-257 12-96 (276)
473 cd03369 ABCC_NFT1 Domain 2 of 94.0 0.049 1.1E-06 52.9 3.6 31 40-72 36-66 (207)
474 cd03231 ABC_CcmA_heme_exporter 94.0 0.052 1.1E-06 52.6 3.7 30 39-70 27-56 (201)
475 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.05 1.1E-06 53.4 3.6 22 40-61 32-53 (220)
476 cd03256 ABC_PhnC_transporter A 93.9 0.051 1.1E-06 54.1 3.6 22 40-61 29-50 (241)
477 PLN03232 ABC transporter C fam 93.9 0.19 4.2E-06 63.2 9.5 22 40-61 1264-1285(1495)
478 cd03216 ABC_Carb_Monos_I This 93.9 0.055 1.2E-06 50.6 3.6 24 39-62 27-50 (163)
479 cd03236 ABC_RNaseL_inhibitor_d 93.9 0.051 1.1E-06 54.8 3.7 30 40-71 28-57 (255)
480 cd03219 ABC_Mj1267_LivG_branch 93.9 0.051 1.1E-06 53.9 3.6 28 40-69 28-55 (236)
481 TIGR02204 MsbA_rel ABC transpo 93.9 0.17 3.6E-06 57.4 8.2 30 40-71 368-397 (576)
482 cd03254 ABCC_Glucan_exporter_l 93.9 0.053 1.2E-06 53.5 3.6 29 40-70 31-59 (229)
483 cd02019 NK Nucleoside/nucleoti 93.9 0.053 1.1E-06 42.8 2.9 21 41-61 2-22 (69)
484 TIGR03608 L_ocin_972_ABC putat 93.9 0.054 1.2E-06 52.5 3.6 22 40-61 26-47 (206)
485 TIGR01192 chvA glucan exporter 93.8 0.21 4.7E-06 56.7 8.9 28 40-69 363-390 (585)
486 PRK15177 Vi polysaccharide exp 93.8 0.053 1.2E-06 53.1 3.5 30 40-71 15-44 (213)
487 PRK13543 cytochrome c biogenes 93.8 0.056 1.2E-06 52.9 3.6 30 40-71 39-68 (214)
488 cd03268 ABC_BcrA_bacitracin_re 93.8 0.053 1.2E-06 52.7 3.4 28 40-69 28-55 (208)
489 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.061 1.3E-06 49.8 3.6 32 39-72 26-57 (157)
490 COG1120 FepC ABC-type cobalami 93.8 0.055 1.2E-06 54.3 3.5 28 40-69 30-57 (258)
491 cd03230 ABC_DR_subfamily_A Thi 93.8 0.06 1.3E-06 50.8 3.6 22 40-61 28-49 (173)
492 cd03235 ABC_Metallic_Cations A 93.8 0.058 1.3E-06 52.7 3.6 22 40-61 27-48 (213)
493 PRK10895 lipopolysaccharide AB 93.7 0.058 1.3E-06 53.8 3.7 28 40-69 31-58 (241)
494 cd03257 ABC_NikE_OppD_transpor 93.7 0.059 1.3E-06 53.1 3.7 28 40-69 33-60 (228)
495 PRK14250 phosphate ABC transpo 93.7 0.059 1.3E-06 53.8 3.7 31 40-72 31-61 (241)
496 PRK13900 type IV secretion sys 93.7 0.076 1.6E-06 55.7 4.6 30 40-71 162-191 (332)
497 cd03223 ABCD_peroxisomal_ALDP 93.7 0.064 1.4E-06 50.3 3.7 22 40-61 29-50 (166)
498 TIGR03410 urea_trans_UrtE urea 93.7 0.06 1.3E-06 53.3 3.7 22 40-61 28-49 (230)
499 cd03260 ABC_PstB_phosphate_tra 93.7 0.053 1.1E-06 53.5 3.2 22 40-61 28-49 (227)
500 TIGR02211 LolD_lipo_ex lipopro 93.7 0.061 1.3E-06 52.8 3.7 22 40-61 33-54 (221)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=6.8e-94 Score=792.73 Aligned_cols=580 Identities=44% Similarity=0.611 Sum_probs=524.4
Q ss_pred CccchhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEE
Q 007538 1 MTTMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQL 80 (599)
Q Consensus 1 ~~~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l 80 (599)
|..|+.+++.+|++|++|..+|.. .+..+|+|+|||+||+||||++|+++|++|||||.|+|||+|++++|
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~~---------~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL 71 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGSS---------SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQL 71 (657)
T ss_pred CchhhhccccchHHHHHHHHhcCC---------CcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeec
Confidence 567999999999999999999932 23599999999999999999999999999999999999999999999
Q ss_pred EecCCCCccceeee-cCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCC
Q 007538 81 HKTEDGSQEYAEFL-HLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP 159 (599)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~ 159 (599)
.+...+..+|++|. |.++..++||++++++|+.+++++.|.++++|+.+|.+++++++++++|+||+||++++++++||
T Consensus 72 ~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp 151 (657)
T KOG0446|consen 72 SIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQP 151 (657)
T ss_pred ccccCCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCC
Confidence 99988778999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC
Q 007538 160 DTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239 (599)
Q Consensus 160 ~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~ 239 (599)
+++..++++|++.|+.++++|||+|+++|.|+++++++++|+++||.|.|||||+||+|++++|++..+.+.|..++++.
T Consensus 152 ~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~ 231 (657)
T KOG0446|consen 152 DDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKV 231 (657)
T ss_pred ccHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007538 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (599)
Q Consensus 240 g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~ 319 (599)
||++|+||++++++...+..++...|..||.+++.|+.+.+++|+++|...|...|..||++++|.+...|+.++.+.++
T Consensus 232 g~v~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~ 311 (657)
T KOG0446|consen 232 GYVGVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQD 311 (657)
T ss_pred ceeeeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhhhHHHHHHHHHHHHHHHHHhhcCC---C-----CCCcchHhHhhhhHHHHhccCCccccCChhhHH
Q 007538 320 EMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGG---R-----PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVK 391 (599)
Q Consensus 320 eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~---~-----~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~ 391 (599)
++.++|. .++.......++.++..|+..+...++|. + +||+|++++|++.|...+.+++|.+.+...+|+
T Consensus 312 el~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~ 389 (657)
T KOG0446|consen 312 ELNRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIE 389 (657)
T ss_pred HHHHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHH
Confidence 9999996 22222233356677777777777777775 2 578999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCChHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccccccCChhhHHHHHHHHHHHHHHH
Q 007538 392 KVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALER 471 (599)
Q Consensus 392 ~~i~~~~g~~p~~f~pe~~f~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~ 471 (599)
+++.|++|++|++|.|+.+|+.++++||+++++|+++||+.||+++.+++++++..+ +|.|||.|+..+.+++.+.+++
T Consensus 390 ~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~~~~~~~~~ 468 (657)
T KOG0446|consen 390 KLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVEIASSLIAE 468 (657)
T ss_pred HHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998753 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccH---Hhhhcch---HHHhh----------------hCCCCCCC----C--C------CC
Q 007538 472 FRDEGRKTVIRLVDMEASYLTV---EFFRKLP---QEVEK----------------AGNPGNSG----N--T------AS 517 (599)
Q Consensus 472 ~~~~a~~~i~~li~~E~~yi~t---d~~~~~~---~~~~~----------------~~~~~~~~----~--~------~~ 517 (599)
++++++++|.++|+||.+|+|| ||++... +.+.. ...+..+. . . .+
T Consensus 469 ~~~~t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (657)
T KOG0446|consen 469 GLDETKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPS 548 (657)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhccc
Confidence 9999999999999999999988 5554321 11111 00000000 0 0 00
Q ss_pred Ccc----cCC---CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhC-hhhHHHHHHhHHh
Q 007538 518 QAV----DRY---SDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGR-KEVLSRSLSYLYA 589 (599)
Q Consensus 518 ~~~----~~~---~~~~~~~i~~~l~aYf~Iv~k~i~D~VPkaI~~~lV~~~~~~lq~~L~~~L~~-~~~~~~ll~e~~~ 589 (599)
+.. ..+ ...+.+.|+.++.+||+||+++|+|+|||+|||+||+.++++||.+|++.||+ .+.+++||+|...
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~~~~~ll~E~~~ 628 (657)
T KOG0446|consen 549 DIVLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDEQLESLLKEDPR 628 (657)
T ss_pred chhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHccCHH
Confidence 000 111 11257889999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhh
Q 007538 590 IGM 592 (599)
Q Consensus 590 ~~~ 592 (599)
++.
T Consensus 629 i~~ 631 (657)
T KOG0446|consen 629 IKR 631 (657)
T ss_pred HHH
Confidence 875
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=4.8e-46 Score=383.02 Aligned_cols=265 Identities=32% Similarity=0.524 Sum_probs=240.4
Q ss_pred HHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHH
Q 007538 227 LDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSI 306 (599)
Q Consensus 227 ~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l 306 (599)
.+++.|+.++|++||++|+|||++++++..+..++...|..||.++|+|+...+++|+++|+.+|+++|.+||+++||.|
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 57899999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHHHHhhcCCCC---------CCcchHhHhhhhHHHHhc
Q 007538 307 TSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP---------GGDRIYGVFDNQLPAALR 377 (599)
Q Consensus 307 ~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~---------~~~~i~~~f~~~~~~~~~ 377 (599)
+.+|+..+.+++.+|++||++++.+..++..+|++++++|++.+.++++|.+. +|++|.++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999999666777888999999999999999999986 479999999999999998
Q ss_pred cCCccccCChhhHHHHHHhhcCCCCCCCCChHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccccccCChhhH
Q 007538 378 KLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTL 457 (599)
Q Consensus 378 ~~~~~~~~~~~~i~~~i~~~~g~~p~~f~pe~~f~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L 457 (599)
+.++.+.+++++|+++|++++|+++++|+|+.+|+.||+++|++|++||.+|++.|++++.+++.+++. .+|.+||+|
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L 239 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNL 239 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHH
Confidence 888888889999999999999999999999999999999999999999999999999999999999876 499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Q 007538 458 QAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTV 493 (599)
Q Consensus 458 ~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~yi~t 493 (599)
++++.+++.++++++..+|+++|+++|+||++|+||
T Consensus 240 ~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T 275 (295)
T PF01031_consen 240 KEAIKEAVQQLLEECREPAKEMIENLIDMELSYINT 275 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999998
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1.4e-45 Score=363.38 Aligned_cols=239 Identities=62% Similarity=0.975 Sum_probs=223.5
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEec
Q 007538 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (599)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (599)
|++|++++|+++++++.+|.... .++|+|+|||++||||||++|+|+|..++|++.|.|||||+++++++.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~---------i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~ 71 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS 71 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCC---------CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC
Confidence 78999999999999988885432 599999999999999999999999999899999999999999999874
Q ss_pred CCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHH
Q 007538 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (599)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~ 163 (599)
..+|+.+.+.+++.+.+++++.+.|+++++.+.|.+++||+++|.++|++|+.++++||||||++..+..+|+.++.
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~ 148 (240)
T smart00053 72 ---STEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIE 148 (240)
T ss_pred ---CCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHH
Confidence 45788888888899999999999999999999999999999999999999999999999999999877777778888
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEE
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~ 243 (599)
+.+++++..|++++++|||+|++++.|+.+++++++++.+++.+.||++|+||+|..++++++.++++|+..++++||++
T Consensus 149 ~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~ 228 (240)
T smart00053 149 EQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIG 228 (240)
T ss_pred HHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEcCChhhhcc
Q 007538 244 IVNRSQADINR 254 (599)
Q Consensus 244 v~~~s~~~i~~ 254 (599)
|+||++++++.
T Consensus 229 v~nr~~~d~~~ 239 (240)
T smart00053 229 VVNRSQKDIEG 239 (240)
T ss_pred EECCChHHhhc
Confidence 99999998764
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=4.1e-30 Score=265.34 Aligned_cols=305 Identities=27% Similarity=0.437 Sum_probs=241.6
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCccccc-ccccccEEEEEEecC
Q 007538 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTE 84 (599)
Q Consensus 6 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~ 84 (599)
+||.+++.+-|+++.-... . +....||+|||||+|||||+|+|+.+....+||||+| ..||.|+.+.+..
T Consensus 283 SLIDMYSEVLD~Ls~YD~s-Y------nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsE-- 353 (980)
T KOG0447|consen 283 SLIDMYSEVLDVLSDYDAS-Y------NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSE-- 353 (980)
T ss_pred HHHHHHHHHHHHHhccccc-c------cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEecc--
Confidence 5677777666665433221 1 1235899999999999999999999999999999998 7899999988744
Q ss_pred CCCccceeeecCCC----CcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCc
Q 007538 85 DGSQEYAEFLHLPK----RRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPD 160 (599)
Q Consensus 85 ~~~~~~~~~~~~~~----~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~ 160 (599)
++...+.|..... .+..|+.+++.+++-.+......|+.+|+..|.+.+.+|+.+.++|||+||++.+.+.|...
T Consensus 354 -GPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~ 432 (980)
T KOG0447|consen 354 -GPHHVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAP 432 (980)
T ss_pred -CcchhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccc
Confidence 3334444433222 24468889999998888777777899999999999999999999999999999988888888
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCC----CcHHHHHhCcccc
Q 007538 161 TIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG----TNALDVLEGRSYR 236 (599)
Q Consensus 161 ~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~----~~~~~~~~~~~~~ 236 (599)
+..+.+-.|.+.|+++|++||||+-+.+.|.+.+-.-.++...||.|.|||+|+||.|+...+ ..+.+++.|+..|
T Consensus 433 dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP 512 (980)
T KOG0447|consen 433 DTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP 512 (980)
T ss_pred cchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence 888999999999999999999999999999988888899999999999999999999998653 2367899999988
Q ss_pred cC-CCeEEEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCch---hhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007538 237 LQ-HPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL---AGKMGSEYLAKLLSKHLESVIRSRIPSITSLINK 312 (599)
Q Consensus 237 l~-~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~---~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~ 312 (599)
.+ +|||+|+.-.+.. .-++.+-+.-|+.||.++..+..- +..+.+.+|.-..+.-+...+++++..-.+....
T Consensus 513 MKALGYfaVVTGrGns---sdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkA 589 (980)
T KOG0447|consen 513 MKALGYFAVVTGKGNS---SESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKA 589 (980)
T ss_pred hhhcceeEEEecCCCc---chhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 7999987643321 113334456788999987554322 3578888888889999888888887766666666
Q ss_pred HHHHHHHHHHh
Q 007538 313 SIEELESEMDH 323 (599)
Q Consensus 313 ~l~~~~~eL~~ 323 (599)
..-.++.|.+.
T Consensus 590 trFNLEtEWKN 600 (980)
T KOG0447|consen 590 TRFNLETEWKN 600 (980)
T ss_pred hhhhhhhhhhh
Confidence 66666666654
No 5
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.88 E-value=9.9e-22 Score=185.36 Aligned_cols=167 Identities=36% Similarity=0.499 Sum_probs=133.0
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCcc-ceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQE-YAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
|+|+|.+|||||||+|+|+|.+++|.+.+.||++|++++.......... +..........+.++.++.+.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999999999999999999999998776553311 111122235677899999999988887777
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 199 (599)
+....++...+.+....+...+++||||||+...... ..+++.+|+..+|++ ++|.+++.++..++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~---------~~~~~~~~~~~~d~v-i~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE---------HTEITEEYLPKADVV-IFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT---------TSHHHHHHHSTTEEE-EEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhh---------hHHHHHHhhccCCEE-EEEeccCcccchHHHHHH
Confidence 7777888888888888999999999999999763322 238899999888866 556678888878888889
Q ss_pred HHHhCCCCCceEEEeccC
Q 007538 200 AREVDPTGERTFGVLTKL 217 (599)
Q Consensus 200 a~~~d~~g~rti~VltK~ 217 (599)
.+..++...++++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=7.9e-19 Score=173.71 Aligned_cols=181 Identities=19% Similarity=0.315 Sum_probs=125.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
.|++||.||+|||||+|+|+|.++ .++|+.| ++. .+.+.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~---QTT---------------------------------R~~I~ 46 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKP---QTT---------------------------------RNRIR 46 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCce-----EeecCCc---chh---------------------------------hhhee
Confidence 699999999999999999999998 8888887 211 12233
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 199 (599)
| |...+..+++||||||++.... ...+.+...+.+.++.+|.|++ |+++...+...+. .+
T Consensus 47 G-------------I~t~~~~QiIfvDTPGih~pk~-----~l~~~m~~~a~~sl~dvDlilf-vvd~~~~~~~~d~-~i 106 (298)
T COG1159 47 G-------------IVTTDNAQIIFVDTPGIHKPKH-----ALGELMNKAARSALKDVDLILF-VVDADEGWGPGDE-FI 106 (298)
T ss_pred E-------------EEEcCCceEEEEeCCCCCCcch-----HHHHHHHHHHHHHhccCcEEEE-EEeccccCCccHH-HH
Confidence 3 5555678999999999988532 3677888889999999998755 5556665544333 34
Q ss_pred HHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccc-cCCCeEEEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCch
Q 007538 200 AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYR-LQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL 278 (599)
Q Consensus 200 a~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~ 278 (599)
+..+.....|.|+++||+|...+......+....... -....+++++..+.+++.+...+.....|.++|.....+++.
T Consensus 107 l~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~ 186 (298)
T COG1159 107 LEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDR 186 (298)
T ss_pred HHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCC
Confidence 5555555689999999999998765333333221111 112567777777788877777777777777766665555555
Q ss_pred hhc
Q 007538 279 AGK 281 (599)
Q Consensus 279 ~~~ 281 (599)
+++
T Consensus 187 ~~r 189 (298)
T COG1159 187 PER 189 (298)
T ss_pred hHH
Confidence 443
No 7
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.73 E-value=1e-17 Score=140.94 Aligned_cols=67 Identities=36% Similarity=0.428 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHhHHhhhh
Q 007538 526 GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEVLSRSLSYLYAIGM 592 (599)
Q Consensus 526 ~~~~~i~~~l~aYf~Iv~k~i~D~VPkaI~~~lV~~~~~~lq~~L~~~L~~~~~~~~ll~e~~~~~~ 592 (599)
.++++|+.++.|||+||+|+++|+|||+||||||+.+++.||.+|+++||+++.+++||+|+.+++.
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~~~~LL~E~~~i~~ 70 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDELLEEDPEIAS 70 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHcCCHHHHH
Confidence 3678999999999999999999999999999999999999999999999999999999999999874
No 8
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=2.2e-14 Score=155.37 Aligned_cols=213 Identities=15% Similarity=0.216 Sum_probs=118.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccce---eeec-----CC-------C-----
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYA---EFLH-----LP-------K----- 98 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~---~~~~-----~~-------~----- 98 (599)
|.++|+|..|+|||||+|+|+|..++|.+...+|.+|+.++.........-+. .|.. .| .
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e 149 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD 149 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHH
Confidence 79999999999999999999999999999999999999776533211111110 0000 00 0
Q ss_pred --CcccChHHHHHHHHHHH----------------------hhhcC-CCCCcC--------C-ccEEEEEecCC-----C
Q 007538 99 --RRFTDFSMVRKEIQDET----------------------DRVTG-KTKQIS--------P-IPIHLSIYSPN-----V 139 (599)
Q Consensus 99 --~~~~~~~~v~~~i~~~~----------------------~~~~g-~~~~~s--------~-~~i~l~i~~~~-----~ 139 (599)
....|..++...|++.. .+.+. -+..|. . -.|.++..... .
T Consensus 150 ~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~ 229 (741)
T PRK09866 150 VLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYP 229 (741)
T ss_pred HHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccccc
Confidence 00011112221111110 00000 001111 0 12223333323 3
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCC--CceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG--ERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g--~rti~VltK~ 217 (599)
.+++||||||+..... ..+...+.+.+..+|+|+++| +++... ......+++.+...+ .|+++|+||+
T Consensus 230 ~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eADvVLFVV-Dat~~~-s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARASAVLAVL-DYTQLK-SISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred CCEEEEECCCCCCccc--------hHHHHHHHHHHhhCCEEEEEE-eCCCCC-ChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 6899999999975321 224444556899999876655 455433 223334556565555 4999999999
Q ss_pred CCCCCCCcH----HHHHhCc--cccc-CCCeEEEEcCChhhhccCCCHHHH
Q 007538 218 DLMDKGTNA----LDVLEGR--SYRL-QHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 218 Dl~~~~~~~----~~~~~~~--~~~l-~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
|+.++.++. .+.+... .... .-..++|+++.+.+++.+++.+..
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 998644322 2222111 1111 235789999999888766655554
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.71 E-value=5.1e-17 Score=165.42 Aligned_cols=200 Identities=15% Similarity=0.191 Sum_probs=114.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
.|+|+|.+|||||||+|+|+|.++ .+++..| .+ +
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-----~~vs~~~------~T---T-------------------------------- 35 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-----SITSPKA------QT---T-------------------------------- 35 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-----eecCCCC------Cc---c--------------------------------
Confidence 689999999999999999999876 2233222 00 0
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 199 (599)
...+. .+...+...+.||||||+.... ....+.+...+..++..+|+++++++..+. . ..+ ..+
T Consensus 36 -------r~~i~-~i~~~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~-~-~~~-~~i 99 (270)
T TIGR00436 36 -------RNRIS-GIHTTGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDLILFVVDSDQW-N-GDG-EFV 99 (270)
T ss_pred -------cCcEE-EEEEcCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCEEEEEEECCCC-C-chH-HHH
Confidence 00000 1222234568999999997632 123444555677889999998877665442 2 111 233
Q ss_pred HHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccC-CCeEEEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCch
Q 007538 200 AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL 278 (599)
Q Consensus 200 a~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~ 278 (599)
...+...+.|+++|+||+|+.+... ..+.......... ..++.+++.++.+++++++.+.....+.+++.......+.
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~ 178 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQ 178 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCC
Confidence 4444445789999999999974322 2221111111111 2689999999999888777666555444443332222222
Q ss_pred hhccChHHHHHHHHHHHHHHHHhhhHH
Q 007538 279 AGKMGSEYLAKLLSKHLESVIRSRIPS 305 (599)
Q Consensus 279 ~~~~g~~~L~~~L~~~L~~~i~~~lP~ 305 (599)
..++ ...+.+.+.+..+..+++|.
T Consensus 179 ~~~~---~~~e~ire~~~~~~~~e~p~ 202 (270)
T TIGR00436 179 PDRF---KISEIIREKIIRYTKEEIPH 202 (270)
T ss_pred CHHH---HHHHHHHHHHHHhcccccCc
Confidence 2211 22333444444455555553
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.70 E-value=1.2e-17 Score=154.01 Aligned_cols=150 Identities=25% Similarity=0.398 Sum_probs=95.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|.||+|||||+|+|+|... .++..| +.+.+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~------~v~n~p---------G~Tv~------------------------------ 36 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ------KVGNWP---------GTTVE------------------------------ 36 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE------EEEEST---------TSSSE------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------eecCCC---------CCCee------------------------------
Confidence 699999999999999999999974 112222 11111
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCcccccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~v~~a~~d~~~~~~l 197 (599)
... .........+.||||||+++.... ... +.++.+|+ .++|.+|+++++.+ .++.+
T Consensus 37 ---------~~~-g~~~~~~~~~~lvDlPG~ysl~~~----s~e---e~v~~~~l~~~~~D~ii~VvDa~~----l~r~l 95 (156)
T PF02421_consen 37 ---------KKE-GIFKLGDQQVELVDLPGIYSLSSK----SEE---ERVARDYLLSEKPDLIIVVVDATN----LERNL 95 (156)
T ss_dssp ---------EEE-EEEEETTEEEEEEE----SSSSSS----SHH---HHHHHHHHHHTSSSEEEEEEEGGG----HHHHH
T ss_pred ---------eee-EEEEecCceEEEEECCCcccCCCC----CcH---HHHHHHHHhhcCCCEEEEECCCCC----HHHHH
Confidence 000 011112367899999999875432 122 35566776 57898877665443 46677
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCC
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~ 256 (599)
.++.++...|.|+++|+||+|...+.....+ .......++.+.+++++++++++++++
T Consensus 96 ~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id-~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 96 YLTLQLLELGIPVVVVLNKMDEAERKGIEID-AEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HHHHHHHHTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCHHHHHHcCCEEC-HHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 8888888889999999999999875542211 111123467889999999998876543
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.70 E-value=8.2e-16 Score=160.91 Aligned_cols=180 Identities=23% Similarity=0.337 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCC
Q 007538 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTED 85 (599)
Q Consensus 6 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~ 85 (599)
++..+..+|.++++...... +..+--+||++|.||+|||||||+|+|.+. .+||..|
T Consensus 193 ~l~~~~~~l~~ll~~~~~g~--------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~---------- 249 (454)
T COG0486 193 KLEELIAELDELLATAKQGK--------ILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA---------- 249 (454)
T ss_pred HHHHHHHHHHHHHHhhhhhh--------hhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC----------
Confidence 44555555555555544332 234667999999999999999999999988 8999888
Q ss_pred CCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHH
Q 007538 86 GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED 165 (599)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~ 165 (599)
|++.++-...+.+ ++..+.|+||.|+..+ +|..++
T Consensus 250 ----------------------------------GTTRDviee~i~i-----~G~pv~l~DTAGiRet------~d~VE~ 284 (454)
T COG0486 250 ----------------------------------GTTRDVIEEDINL-----NGIPVRLVDTAGIRET------DDVVER 284 (454)
T ss_pred ----------------------------------CCccceEEEEEEE-----CCEEEEEEecCCcccC------ccHHHH
Confidence 3322222222222 3577999999999752 334444
Q ss_pred H-HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEE
Q 007538 166 I-ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGI 244 (599)
Q Consensus 166 i-~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v 244 (599)
+ -+-.+..++++|.|++ |.+++..+...+ ..+.. ..+.+.++++|+||.|+..+...... ....+..++.+
T Consensus 285 iGIeRs~~~i~~ADlvL~-v~D~~~~~~~~d-~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~i 356 (454)
T COG0486 285 IGIERAKKAIEEADLVLF-VLDASQPLDKED-LALIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISI 356 (454)
T ss_pred HHHHHHHHHHHhCCEEEE-EEeCCCCCchhh-HHHHH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEE
Confidence 3 3557778999998755 455655442333 22333 45678999999999999976532110 22334468899
Q ss_pred EcCChhhhccCCCHHHH
Q 007538 245 VNRSQADINRNIDMIVA 261 (599)
Q Consensus 245 ~~~s~~~i~~~~~~~~~ 261 (599)
+++++++++.+...+.+
T Consensus 357 Sa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 357 SAKTGEGLDALREAIKQ 373 (454)
T ss_pred EecCccCHHHHHHHHHH
Confidence 99999888765544443
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=2.6e-16 Score=164.19 Aligned_cols=159 Identities=23% Similarity=0.289 Sum_probs=115.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
|.|++||.||+|||||+|+|+|.+. .++...|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~p------------------------------------------- 35 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTP------------------------------------------- 35 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCC-------------------------------------------
Confidence 8999999999999999999999986 5555555
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
|++.|.++-... .....+.+|||+|+.... ++.+.+++...+...+..+|+||++| ++...+ +.....
T Consensus 36 -----GvTRDr~y~~~~-~~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilfvV-D~~~Gi-t~~D~~ 103 (444)
T COG1160 36 -----GVTRDRIYGDAE-WLGREFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILFVV-DGREGI-TPADEE 103 (444)
T ss_pred -----CCccCCccceeE-EcCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEEEE-eCCCCC-CHHHHH
Confidence 122222221111 123459999999997532 23478889999999999999886655 566666 555667
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCC-eEEEEcCChhhhccCCCHHHHH
Q 007538 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 199 la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
+|+.+.+.++|+|+|+||+|..+......+ .+.+++| .+++++-.+.++.++.+...+.
T Consensus 104 ia~~Lr~~~kpviLvvNK~D~~~~e~~~~e-----fyslG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 104 IAKILRRSKKPVILVVNKIDNLKAEELAYE-----FYSLGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred HHHHHHhcCCCEEEEEEcccCchhhhhHHH-----HHhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence 888888878999999999998844333333 4566665 5788888888888776655544
No 13
>PRK00089 era GTPase Era; Reviewed
Probab=99.66 E-value=7.9e-16 Score=158.60 Aligned_cols=166 Identities=23% Similarity=0.323 Sum_probs=102.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
..|+|+|.+|||||||+|+|+|.++ .+++..| + + +
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~---~---t---t------------------------------- 40 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKP---Q---T---T------------------------------- 40 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCce-----eecCCCC---C---c---c-------------------------------
Confidence 3699999999999999999999876 3333333 0 0 0
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
...+. .+......+++||||||+..... ...+.+...+..++..+|+++++++..+ .+ ......
T Consensus 41 --------~~~i~-~i~~~~~~qi~~iDTPG~~~~~~-----~l~~~~~~~~~~~~~~~D~il~vvd~~~-~~-~~~~~~ 104 (292)
T PRK00089 41 --------RHRIR-GIVTEDDAQIIFVDTPGIHKPKR-----ALNRAMNKAAWSSLKDVDLVLFVVDADE-KI-GPGDEF 104 (292)
T ss_pred --------cccEE-EEEEcCCceEEEEECCCCCCchh-----HHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-ChhHHH
Confidence 00000 12222346899999999976331 2345556677788999999877765443 33 233334
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccc-cCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYR-LQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 199 la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
+++.+...+.|+++|+||+|+..........+...... -...++.+++.++.++++++..+.....+
T Consensus 105 i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 105 ILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 55555555789999999999984322222222211111 12457888888888877766655554433
No 14
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=9.1e-15 Score=153.58 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=103.7
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...|+|++||.+|+|||||+|+|+|.++.+.+...+|+-|+.-.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------ 230 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------ 230 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE------------------------------------
Confidence 36799999999999999999999998765555555565553211
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-- 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~-- 193 (599)
+..++...+.||||||+.+. -|.+..+.++. +..++.++|++++|++..+.....
T Consensus 231 ------------------i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 231 ------------------LDLPDGGEVLLTDTVGFIRD----LPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQI 287 (351)
T ss_pred ------------------EEeCCCceEEEEecCccccc----CCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHH
Confidence 22334467899999999652 13345555655 445788999887777654432211
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
..+..+.+.+...+.|+++|+||+|+.+.. .... ... ....++.+++.++.++++++..
T Consensus 288 ~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-~v~~-~~~----~~~~~i~iSAktg~GI~eL~~~ 346 (351)
T TIGR03156 288 EAVEKVLEELGAEDIPQLLVYNKIDLLDEP-RIER-LEE----GYPEAVFVSAKTGEGLDLLLEA 346 (351)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeecCCChH-hHHH-HHh----CCCCEEEEEccCCCCHHHHHHH
Confidence 122355666655578999999999997532 1211 111 1134788999988887765543
No 15
>PRK15494 era GTPase Era; Provisional
Probab=99.61 E-value=4.9e-15 Score=155.32 Aligned_cols=201 Identities=19% Similarity=0.253 Sum_probs=118.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|++||.+|+|||||+|+|+|..+ .+++..|
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~------------------------------------------- 84 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKV------------------------------------------- 84 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce-----eeccCCC-------------------------------------------
Confidence 3899999999999999999999876 2222222
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
+.+. +.+. .+...+..++.||||||+..... .+...+...+..++..+|++++++++ ...+...+ ..
T Consensus 85 -~tTr----~~~~-~~~~~~~~qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aDvil~VvD~-~~s~~~~~-~~ 151 (339)
T PRK15494 85 -QTTR----SIIT-GIITLKDTQVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSADLVLLIIDS-LKSFDDIT-HN 151 (339)
T ss_pred -CCcc----CcEE-EEEEeCCeEEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCCEEEEEEEC-CCCCCHHH-HH
Confidence 0000 0000 11112245789999999964221 13344555566678899999887654 33332221 23
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCc
Q 007538 199 LAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGH 277 (599)
Q Consensus 199 la~~~d~~g~rti~VltK~Dl~~~~~-~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~ 277 (599)
++..+...+.+.|+|+||+|+.+... +..+.+.. ......++.+++.++.+++++++.+.....|.+++.....+++
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td 229 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITD 229 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 44444444568889999999965321 11122211 1112468999999999999888888777777766665555555
Q ss_pred hhhccChHHHHHHHHHHHHHHHHhhhHH
Q 007538 278 LAGKMGSEYLAKLLSKHLESVIRSRIPS 305 (599)
Q Consensus 278 ~~~~~g~~~L~~~L~~~L~~~i~~~lP~ 305 (599)
...++= ..+-+.+.+..++.+++|.
T Consensus 230 ~~~~~~---~~eiiRe~~~~~~~~EiP~ 254 (339)
T PRK15494 230 LPMRFI---AAEITREQLFLNLQKELPY 254 (339)
T ss_pred CCHHHH---HHHHHHHHHHhhCCcccCc
Confidence 443221 1233334444455556663
No 16
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=6.6e-15 Score=147.10 Aligned_cols=159 Identities=19% Similarity=0.302 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecC
Q 007538 5 ESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTE 84 (599)
Q Consensus 5 ~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~ 84 (599)
.++.++++++.+-+..++........||....++|+|+|.|.||+|||||+++|++.+. -+..+|
T Consensus 135 GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------EvA~YP--------- 199 (346)
T COG1084 135 GRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------EVAPYP--------- 199 (346)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC------ccCCCC---------
Confidence 45677888888877777765544456888888999999999999999999999999864 111122
Q ss_pred CCCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHH
Q 007538 85 DGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVE 164 (599)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~ 164 (599)
|+.+.|.+.....+...+.+|||||+-+-+.. --.
T Consensus 200 ----------------------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~-----ErN 234 (346)
T COG1084 200 ----------------------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE-----ERN 234 (346)
T ss_pred ----------------------------------------ccccceeEeeeecCCceEEEecCCcccCCChH-----Hhc
Confidence 55566676666667778999999999775432 334
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCc--ccccHHHHHHHHHhCCC-CCceEEEeccCCCCCCC
Q 007538 165 DIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPT-GERTFGVLTKLDLMDKG 223 (599)
Q Consensus 165 ~i~~~~~~yi~~~~~iIL~v~~a~~--d~~~~~~l~la~~~d~~-g~rti~VltK~Dl~~~~ 223 (599)
.++..+-..+++-+.+||++.+.+. .+...+...+.+++.+. ..+++.|+||+|..+.+
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 5565555566664444555444432 34445556677776654 36899999999999654
No 17
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=1.5e-14 Score=150.78 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=104.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-++.|++||.||||||||||+|++...-..+...+|+.|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 4678999999999999999999987532223345666662211
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~ 194 (599)
+...+...++++||||++..+..+ ..+.....+++++++++|+|++.++.+ +.. .
T Consensus 200 -----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~ 256 (335)
T PRK12299 200 -----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYK 256 (335)
T ss_pred -----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHH
Confidence 112234568999999998754331 233445566788899888877655433 111 1
Q ss_pred HHHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.+...+..+++ ...+.++|+||+|+.+......+............++.+++.+..++++++..+....
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 23333344443 3689999999999976442211111111122345788999999888877766555443
No 18
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=2.4e-14 Score=153.89 Aligned_cols=161 Identities=18% Similarity=0.271 Sum_probs=102.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.+|.|++||.+|||||||+|+|+|.++...+...+|+-|+.-.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------- 238 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------- 238 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE-------------------------------------
Confidence 6799999999999999999999998764333334454442211
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~-- 194 (599)
+..++...+.||||||+.+. .|.+..+.+.. +..+++.+|++++|++.++......
T Consensus 239 -----------------i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~ 296 (426)
T PRK11058 239 -----------------IDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIE 296 (426)
T ss_pred -----------------EEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHH
Confidence 11223336789999999652 23345555554 4567889999888776554332111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCC-eEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.+..+..++...+.|+++|+||+|+.+......+.. ..+.+ ++.+++.++.++++++..+..
T Consensus 297 ~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~-----~~~~~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 297 AVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRD-----EENKPIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred HHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHH-----hcCCCceEEEeCCCCCCHHHHHHHHHH
Confidence 123556666656789999999999975321111111 11233 367888888887776655544
No 19
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.9e-14 Score=135.50 Aligned_cols=128 Identities=26% Similarity=0.376 Sum_probs=88.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.+|.||++|+.|+||||+||+|+|..-|-|-+.. | +.++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSkt----P---------GrTq---------------------------- 61 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKT----P---------GRTQ---------------------------- 61 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCC----C---------Cccc----------------------------
Confidence 7899999999999999999999997643332221 1 1100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEE--EEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVI--LAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iI--L~v~~a~~d~~~~ 194 (599)
..- .+.. ...+.|||+||+.-..+ |+...+.+..++..|++....+. ++++++.... ..
T Consensus 62 -----------~iN---ff~~-~~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~-~~ 122 (200)
T COG0218 62 -----------LIN---FFEV-DDELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP-KD 122 (200)
T ss_pred -----------eeE---EEEe-cCcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC-cH
Confidence 000 1111 12388999999976443 34677889999999998743232 2245666655 44
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~ 224 (599)
...++...+...+.++++|+||+|.+..+.
T Consensus 123 ~D~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 123 LDREMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 445678888888999999999999998764
No 20
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=2.6e-14 Score=151.89 Aligned_cols=172 Identities=18% Similarity=0.166 Sum_probs=104.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-+..|++||.||||||||||+|++...-......+|+.|..-.
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi------------------------------------- 200 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV------------------------------------- 200 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE-------------------------------------
Confidence 3458999999999999999999998643333445666663222
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---ccccc
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---QDIAT 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~---~d~~~ 193 (599)
+...+...++|+||||+...+..+ ..+.....++++.+++++++++... .+...
T Consensus 201 -----------------v~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e 257 (390)
T PRK12298 201 -----------------VRVDDERSFVVADIPGLIEGASEG------AGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVE 257 (390)
T ss_pred -----------------EEeCCCcEEEEEeCCCccccccch------hhHHHHHHHHHHhCCEEEEEeccCcccccChHH
Confidence 112223458999999998754321 1122233457889998888775441 22211
Q ss_pred --HHHHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCcc--cccCCCeEEEEcCChhhhccCCCHHHHHHHHHh
Q 007538 194 --SDAMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRS--YRLQHPWVGIVNRSQADINRNIDMIVARRKERE 267 (599)
Q Consensus 194 --~~~l~la~~~d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ 267 (599)
..+++....+.+ .+.|.++|+||+|+.+... ..+.+.... ......++.+++.+..++++++..+.....+..
T Consensus 258 ~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 258 NARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred HHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 122222233222 3579999999999975432 222222111 111235789999999998887777766665544
Q ss_pred Hh
Q 007538 268 YF 269 (599)
Q Consensus 268 ff 269 (599)
++
T Consensus 337 ~~ 338 (390)
T PRK12298 337 RE 338 (390)
T ss_pred cc
Confidence 43
No 21
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.57 E-value=1.2e-13 Score=150.01 Aligned_cols=155 Identities=25% Similarity=0.305 Sum_probs=96.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+-++|+++|.+|+|||||+|+|+|.+. .+++..|
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~----------------------------------------- 247 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIA----------------------------------------- 247 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCC-----------------------------------------
Confidence 457999999999999999999999865 2222222
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHH-HHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI-ESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i-~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
|.+ .+.+...+. .+...+.||||||+.. +.+..+.. -..+..+++.+|++++|++..+ .. ..+
T Consensus 248 ---gtT----~d~~~~~i~-~~g~~i~l~DT~G~~~------~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~-~~-s~~ 311 (449)
T PRK05291 248 ---GTT----RDVIEEHIN-LDGIPLRLIDTAGIRE------TDDEVEKIGIERSREAIEEADLVLLVLDASE-PL-TEE 311 (449)
T ss_pred ---Ccc----cccEEEEEE-ECCeEEEEEeCCCCCC------CccHHHHHHHHHHHHHHHhCCEEEEEecCCC-CC-Chh
Confidence 000 011111111 1245689999999853 22222221 2335678999999877765533 32 222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
...+... ..+.++++|+||+|+.+..... ......++.+++.++.++++++..+....
T Consensus 312 ~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 312 DDEILEE--LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred HHHHHHh--cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 3334433 3468999999999997543211 12235688999999998888777665544
No 22
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.56 E-value=1.4e-13 Score=148.73 Aligned_cols=179 Identities=18% Similarity=0.239 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCC
Q 007538 7 LIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDG 86 (599)
Q Consensus 7 l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~ 86 (599)
+..+.++|++++..... ......++|+++|.+|+|||||+|+|+|.+. .+++..|
T Consensus 181 l~~~~~~l~~ll~~~~~---------~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~p----------- 235 (442)
T TIGR00450 181 LLSIIAELKDILNSYKL---------EKLDDGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIK----------- 235 (442)
T ss_pred HHHHHHHHHHHHHHHHH---------HHhhcCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCC-----------
Confidence 44555555555544421 1223667999999999999999999999764 2333333
Q ss_pred CccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHH
Q 007538 87 SQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI 166 (599)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i 166 (599)
|.+. +.+...+.. +...+.+|||||+.... +..+..
T Consensus 236 ---------------------------------gtTr----d~~~~~i~~-~g~~v~l~DTaG~~~~~------~~ie~~ 271 (442)
T TIGR00450 236 ---------------------------------GTTR----DVVEGDFEL-NGILIKLLDTAGIREHA------DFVERL 271 (442)
T ss_pred ---------------------------------CcEE----EEEEEEEEE-CCEEEEEeeCCCcccch------hHHHHH
Confidence 0000 001101111 23457899999995421 122222
Q ss_pred -HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEE
Q 007538 167 -ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIV 245 (599)
Q Consensus 167 -~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~ 245 (599)
-.....|++.+|++++|++..+. . +.+.. +...+...+.|+|+|+||+|+.+. +...+ ...++..++.++
T Consensus 272 gi~~~~~~~~~aD~il~V~D~s~~-~-s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~----~~~~~~~~~~vS 342 (442)
T TIGR00450 272 GIEKSFKAIKQADLVIYVLDASQP-L-TKDDF-LIIDLNKSKKPFILVLNKIDLKIN--SLEFF----VSSKVLNSSNLS 342 (442)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCC-C-ChhHH-HHHHHhhCCCCEEEEEECccCCCc--chhhh----hhhcCCceEEEE
Confidence 24566899999999887765432 2 12222 344444457899999999999754 22111 122345678888
Q ss_pred cCChhhhccCCCHHHHHHH
Q 007538 246 NRSQADINRNIDMIVARRK 264 (599)
Q Consensus 246 ~~s~~~i~~~~~~~~~~~~ 264 (599)
+.+ .++++++..+.....
T Consensus 343 ak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred Eec-CCHHHHHHHHHHHHH
Confidence 887 466666655554443
No 23
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.54 E-value=8.1e-15 Score=123.70 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHhHHhhhh
Q 007538 527 HFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEVLSRSLSYLYAIGM 592 (599)
Q Consensus 527 ~~~~i~~~l~aYf~Iv~k~i~D~VPkaI~~~lV~~~~~~lq~~L~~~L~~~~~~~~ll~e~~~~~~ 592 (599)
++++|++++.|||+||+|||+|+|||+|+||||++++++|+.+|+.+||..+.+.+||+|..+++.
T Consensus 5 ~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~i~~ 70 (92)
T PF02212_consen 5 EVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPEIAE 70 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999875
No 24
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.54 E-value=6.6e-14 Score=131.25 Aligned_cols=156 Identities=12% Similarity=0.154 Sum_probs=98.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|+++||||||++++++.++.+.....++....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 41 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFA----------------------------------------- 41 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE-----------------------------------------
Confidence 458999999999999999999998763222211111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
...+.+.+ ....+.+|||||. +.+..+...|++.++++|++++..+... ....
T Consensus 42 -----------~~~~~~~~-~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (165)
T cd01868 42 -----------TRSIQIDG-KTIKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITKKQTFENVER 96 (165)
T ss_pred -----------EEEEEECC-EEEEEEEEeCCCh-------------HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHH
Confidence 00111111 1245889999997 4456677889999999888876554221 1123
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
++..++...+.+.++++|+||+|+.+......+.........+.+|+.+++.++.++++.+..+
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 4455555556678999999999997643221111111122245679999999988877655443
No 25
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.54 E-value=1.5e-13 Score=133.97 Aligned_cols=158 Identities=20% Similarity=0.307 Sum_probs=97.2
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...|+|+|+|.+|||||||+|+|+|..+.+.+....|.-|...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~------------------------------------- 81 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR------------------------------------- 81 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE-------------------------------------
Confidence 3578999999999999999999999875443333333222110
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--c
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--T 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~ 193 (599)
.+..++...++||||||+.+.. +....+.+.... .++..+|+++++++..+.... .
T Consensus 82 -----------------~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 82 -----------------RLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQI 139 (204)
T ss_pred -----------------EEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHH
Confidence 1222233478999999986532 222333344433 456788988777754433221 1
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
..+..+.+.+...+.++++|+||+|+.+..... .. .......++.+++..+.++.+.+.
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-ER----LEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-HH----hhcCCCceEEEEcCCCCCHHHHHH
Confidence 233455566555578999999999997643221 11 122234678889888877665543
No 26
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.53 E-value=9.2e-14 Score=131.01 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=97.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|||.+|+|||||++++++..+-+......+....
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 42 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG---------------------------------------- 42 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE----------------------------------------
Confidence 4569999999999999999999998763332221111110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~- 195 (599)
...+.+.+ ....+.||||||. +.+..+...|++.+++++++++..+.. .-+.
T Consensus 43 ------------~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~il~v~d~~~~~-s~~~~ 95 (168)
T cd01866 43 ------------ARMITIDG-KQIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRE-TFNHL 95 (168)
T ss_pred ------------EEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 00111111 1236889999995 456777888999999998877654321 1122
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 196 --AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 196 --~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
++...+.....+.++++|.||.|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 96 ~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 96 TSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred HHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 222233333346899999999999754322111122222334567899999999888776654443
No 27
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=8.9e-14 Score=134.13 Aligned_cols=116 Identities=15% Similarity=0.193 Sum_probs=78.7
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.||||||. +.+..+...|++.++++|++++..+.+. ....++..+....+.+.|+++|+||.
T Consensus 50 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 50 VKLQIWDTAGQ-------------ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEEeCCCc-------------HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 46889999995 4456667789999999888776544321 11334555666666678999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHHHhH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREY 268 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~f 268 (599)
|+........+.........+.+|+.+++.++.++++.+..+.+...+...
T Consensus 117 Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 117 DMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred cchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 997533211111111122345689999999999999988888777666543
No 28
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.53 E-value=6.8e-14 Score=131.30 Aligned_cols=156 Identities=16% Similarity=0.234 Sum_probs=93.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
|.|+|+|.+|+|||||+|+|++..+.......+|+.. .
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~---~--------------------------------------- 38 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI---G--------------------------------------- 38 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEee---c---------------------------------------
Confidence 7899999999999999999998876322111122111 0
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
...+....+...++++|||||. .....+...++..+|+++++++....+ ......
T Consensus 39 ----------~~~~~~~~~~~~~~~iiDtpG~-------------~~~~~~~~~~~~~~d~il~v~d~~~~~--~~~~~~ 93 (168)
T cd01887 39 ----------AFEVPAEVLKIPGITFIDTPGH-------------EAFTNMRARGASLTDIAILVVAADDGV--MPQTIE 93 (168)
T ss_pred ----------cEEEecccCCcceEEEEeCCCc-------------HHHHHHHHHHHhhcCEEEEEEECCCCc--cHHHHH
Confidence 0000111023567999999997 234456667788999987777654432 223333
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCc------ccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 199 LAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGR------SYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 199 la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~------~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
....+...+.+.++|+||+|+.+...+ ....+... .......++.+++.++.++.++++.+..
T Consensus 94 ~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T cd01887 94 AIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILL 163 (168)
T ss_pred HHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHH
Confidence 333333457899999999999754321 11212111 1122346788888888877766555443
No 29
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.52 E-value=1e-13 Score=130.22 Aligned_cols=158 Identities=17% Similarity=0.251 Sum_probs=85.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
|+|+++|.+|+||||++|+|++..+........|..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~------------------------------------------- 37 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSL------------------------------------------- 37 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccce-------------------------------------------
Confidence 7899999999999999999999865111111111111
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh-cCCCeEEEEEecCCcc-cccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV-EKPNSVILAISPANQD-IATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-~~~~~iIL~v~~a~~d-~~~~~~ 196 (599)
.+.........++||||||+...+.. .. ..+......++ ..+++++++++..+.. +.....
T Consensus 38 ------------~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~---~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~ 100 (168)
T cd01897 38 ------------FVGHFDYKYLRWQVIDTPGLLDRPLE--ER---NTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQ 100 (168)
T ss_pred ------------eEEEEccCceEEEEEECCCcCCcccc--CC---chHHHHHHHHHHhccCcEEEEEeCCcccccchHHH
Confidence 10111112457899999998542211 11 11111111122 2357777766544322 111222
Q ss_pred HHHHHHhCCC--CCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 197 MKLAREVDPT--GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 197 l~la~~~d~~--g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
..+...+... +.++++|+||+|+.+... ... ...........++.+++.++.++++++..
T Consensus 101 ~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (168)
T cd01897 101 LSLFEEIKPLFKNKPVIVVLNKIDLLTFED-LSE-IEEEEELEGEEVLKISTLTEEGVDEVKNK 162 (168)
T ss_pred HHHHHHHHhhcCcCCeEEEEEccccCchhh-HHH-HHHhhhhccCceEEEEecccCCHHHHHHH
Confidence 3333333322 689999999999975432 111 11111123456888899888887765543
No 30
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.52 E-value=1.1e-13 Score=130.21 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=98.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||++++++.+|-+ ....++..+..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~---------------------------------------- 41 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFK---------------------------------------- 41 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEE----------------------------------------
Confidence 5699999999999999999999987622 11111100000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
...+.+. .....+.||||||. +....+...+++++|++|++++..+.+. ....
T Consensus 42 -----------~~~~~~~-~~~~~l~l~D~~g~-------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~ 96 (167)
T cd01867 42 -----------IRTIELD-GKKIKLQIWDTAGQ-------------ERFRTITTAYYRGAMGIILVYDITDEKSFENIRN 96 (167)
T ss_pred -----------EEEEEEC-CEEEEEEEEeCCch-------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHH
Confidence 0011111 11246889999996 3445667789999999988876543221 1123
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
++...+...+.+.++++|.||+|+.+......+.........+.+|+.+++.++.++++.+..+.
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 44444444556789999999999986432222222222234456799999999888877665444
No 31
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.51 E-value=1.1e-13 Score=128.65 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=93.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCccccccc-ccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV-TRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-.+|+++|.+||||||++|+|+|.++.+.+.... |+.+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----------------------------------------- 41 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-----------------------------------------
Confidence 3479999999999999999999986522221111 1000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
+. .+.......+.+|||||+...... ..+.+......++..+|++++++..... . .+..
T Consensus 42 -------------~~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~~-~-~~~~ 100 (168)
T cd04163 42 -------------IR-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASEP-I-GEGD 100 (168)
T ss_pred -------------EE-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCCc-c-CchH
Confidence 00 122222467899999998653321 2233555677788999988887665543 2 2222
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCccccc-CCCeEEEEcCChhhhccCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRL-QHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l-~~g~~~v~~~s~~~i~~~~ 256 (599)
..+.+.+...+.+.++|+||+|+........+......... ...++.+++..+.++++.+
T Consensus 101 ~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 101 EFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELL 161 (168)
T ss_pred HHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHH
Confidence 33444454456899999999999843333332222222222 2466777877776655443
No 32
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.51 E-value=1.3e-13 Score=128.48 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=93.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|++|||||||+|+++|.++.+......|..+...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE-----------------------------------------
Confidence 699999999999999999999886332222111111000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~~~l 197 (599)
.+.+.+ ....+.+|||||. .....++..+++.++++|++++..+.. +.. ..++
T Consensus 41 -----------~~~~~~-~~~~l~~~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 41 -----------TMYLED-KTVRLQLWDTAGQ-------------ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred -----------EEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 011111 1135889999996 445678888999999988877654321 111 2233
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.......+.+.++++|+||+|+........+.........+..++.+++..+.++++.+..+
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 33333333468999999999996443322222222222344678889998888776655443
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.51 E-value=1.5e-13 Score=129.04 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=71.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.||||||. +....+...|++++++++++++..+... ...+|+...+...+...++++|+||+
T Consensus 50 ~~~~l~Dt~g~-------------~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 116 (165)
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence 45889999996 3456677889999999988876544321 12344445555555578899999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
|+.+......+........++.+|+.+++.++.++++++..+..
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 117 DMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99765432111111112234567899999998888776655443
No 34
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.51 E-value=1.1e-13 Score=133.54 Aligned_cols=166 Identities=20% Similarity=0.253 Sum_probs=99.2
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccc--cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (599)
..+|+|+|+|.+|+|||||+|+|+|.++.+..++. +|+.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 63 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-------------------------------------- 63 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE--------------------------------------
Confidence 37899999999999999999999997643322211 11111
Q ss_pred HHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCC---eEEEEEecCCcc
Q 007538 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN---SVILAISPANQD 190 (599)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~---~iIL~v~~a~~d 190 (599)
..... ..++.||||||+.... .+....+.+..++..|++..+ .+++ +.++...
T Consensus 64 -------------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~ 119 (196)
T PRK00454 64 -------------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVL-LIDSRHP 119 (196)
T ss_pred -------------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEE-EEecCCC
Confidence 01111 2579999999976422 233345667788888888764 3433 3344433
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcH--HHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNA--LDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 191 ~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~--~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
. ......+.+.+...+.++++|+||+|+.+.+... .+.+..........++++++.++.++++.+..+....+
T Consensus 120 ~-~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 120 L-KELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred C-CHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3 2222233344445578899999999998654311 11111111111457788888888877776665554433
No 35
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.51 E-value=1.8e-13 Score=128.59 Aligned_cols=155 Identities=13% Similarity=0.164 Sum_probs=97.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
-+|+++|++++|||||++++.+..|.+.... ++.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~-t~~~~~~----------------------------------------- 40 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-TIGVEFG----------------------------------------- 40 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc-ccceeEE-----------------------------------------
Confidence 4799999999999999999998876332111 1101000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
...+.+.+ ....+.||||||. +.+..+...|+++++++|++++..+... ....+
T Consensus 41 ----------~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 96 (166)
T cd04122 41 ----------TRIIEVNG-QKIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 96 (166)
T ss_pred ----------EEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 00111111 1246789999996 4566778889999999999887655321 11244
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+...+.....+.++++|.||+|+........+.........+..|+.+++.++.++++.+..+
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 444444444567899999999997654321111221122345679999999998887765433
No 36
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.50 E-value=1.6e-13 Score=129.15 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=88.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
.|++||.+|||||||+|+|+|.+..+......|+.|..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~------------------------------------------ 39 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL------------------------------------------ 39 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc------------------------------------------
Confidence 48999999999999999999876422221222322200
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc-cccc--HHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~-d~~~--~~~ 196 (599)
| . +...+...+.||||||+....... +.+.......+..+|+++++++..+. +... ..+
T Consensus 40 ~----------~--~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~ 101 (170)
T cd01898 40 G----------V--VRVDDGRSFVVADIPGLIEGASEG------KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTI 101 (170)
T ss_pred e----------E--EEcCCCCeEEEEecCcccCccccc------CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHH
Confidence 0 0 111222478999999986432111 11122233445679988887765543 1111 123
Q ss_pred HHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCcccc-cCCCeEEEEcCChhhhccCCC
Q 007538 197 MKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYR-LQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 197 l~la~~~d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~ 257 (599)
.+......+ .+.+.++|+||+|+.+..... +........ ....++.+++.++.++++.+.
T Consensus 102 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 164 (170)
T cd01898 102 RNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGLDELLR 164 (170)
T ss_pred HHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHHHHH
Confidence 333333332 368999999999997654321 111111111 235678888888877765544
No 37
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.50 E-value=2.1e-13 Score=130.09 Aligned_cols=154 Identities=21% Similarity=0.271 Sum_probs=94.4
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCccccc--ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (599)
...|+|+|+|.+|+||||++|+|+|..+.+.-+. .+|+-+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 57 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI-------------------------------------- 57 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE--------------------------------------
Confidence 4788999999999999999999999864222111 011110
Q ss_pred HHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCC---CeEEEEEecCCcc
Q 007538 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQD 190 (599)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~---~~iIL~v~~a~~d 190 (599)
....+ ..++.+|||||+..... +......+..+...|++.. +++++++ +++..
T Consensus 58 ----------------~~~~~----~~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vv-d~~~~ 113 (179)
T TIGR03598 58 ----------------NFFEV----NDGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLM-DIRHP 113 (179)
T ss_pred ----------------EEEEe----CCcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEe-cCCCC
Confidence 00011 13689999999865322 2333456777777888754 5665555 45555
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCcccc--cCCCeEEEEcCChhhh
Q 007538 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYR--LQHPWVGIVNRSQADI 252 (599)
Q Consensus 191 ~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~--l~~g~~~v~~~s~~~i 252 (599)
+ ......+.+.+...+.++++|+||+|+++.... ..+.++..... ....++.+++.+++++
T Consensus 114 ~-~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 114 L-KELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred C-CHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 5 333334556666678999999999999854321 11111111111 1236899999888765
No 38
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.49 E-value=2.3e-13 Score=127.83 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=96.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|.+|+|||||++++++..+.+ .. ..|-.+ ...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~-~~t~~~-~~~--------------------------------------- 40 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SY-ISTIGV-DFK--------------------------------------- 40 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CC-CCccce-eEE---------------------------------------
Confidence 589999999999999999999887622 11 111000 000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
...+.+. .....+.+|||||. +....+...|+++++++|++++..+.+. ....+
T Consensus 41 ----------~~~~~~~-~~~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~ 96 (166)
T cd01869 41 ----------IRTIELD-GKTIKLQIWDTAGQ-------------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW 96 (166)
T ss_pred ----------EEEEEEC-CEEEEEEEEECCCc-------------HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHH
Confidence 0001111 11245789999996 4456677889999999998887654321 11234
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+...+.....+.+.++|.||+|+........+.........+.+|+.+++.++.++++.+..+.
T Consensus 97 ~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 97 LQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred HHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 4444444445689999999999865432211112222223456799999999988877665443
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.49 E-value=2.5e-13 Score=127.11 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=93.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++++|||||++++++..+.+......+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~----------------------------------------------- 34 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG----------------------------------------------- 34 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-----------------------------------------------
Confidence 799999999999999999999886321111000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l 197 (599)
+......+.+. .....+.||||||. +....+...|++.++++|++++..+... ....++
T Consensus 35 -----~~~~~~~~~~~-~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~ 95 (168)
T cd04119 35 -----IDYGVKKVSVR-NKEVRVNFFDLSGH-------------PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWL 95 (168)
T ss_pred -----eeEEEEEEEEC-CeEEEEEEEECCcc-------------HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHH
Confidence 00000011111 12356889999997 3345677888999999988876554321 112344
Q ss_pred HHHHHhC-C----CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 198 KLAREVD-P----TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~~d-~----~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
....... + .+.|+++|+||+|+.++...............+..|+.+++.++.++++.+..+
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 3333332 2 468999999999997432211111111112234578999999988877665543
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.49 E-value=1.7e-13 Score=127.88 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=91.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++|||||||++++++..| +....++++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~------------------------------------------- 37 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDS------------------------------------------- 37 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhh-------------------------------------------
Confidence 4899999999999999999998765 22211111000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~ 196 (599)
... .+.+ ......+.||||||. +.+..+...|++++++++++++..+.. +. ...+
T Consensus 38 -------~~~--~~~~-~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 94 (163)
T cd04136 38 -------YRK--QIEV-DGQQCMLEILDTAGT-------------EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDL 94 (163)
T ss_pred -------EEE--EEEE-CCEEEEEEEEECCCc-------------cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHH
Confidence 000 0111 112345789999997 334566778999999998887654422 11 1122
Q ss_pred HHHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
....... ...+.|+++|+||+|+.+......+.........+.+|+.++++++.++.+.+..+
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 95 REQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 2233332 23468999999999997543221111111112234678999999988877665433
No 41
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=1.9e-13 Score=147.89 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=99.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-+..|++||.+|||||||||+|++...-..+...+|+.|..-.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv------------------------------------- 200 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV------------------------------------- 200 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE-------------------------------------
Confidence 4678999999999999999999997642233345565552211
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc----cc-
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ----DI- 191 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~----d~- 191 (599)
+ ......++|+||||++..+..+ ..+......++.+++++|+||+.++. +.
T Consensus 201 -----------------v-~~~~~~f~laDtPGliegas~g------~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~ 256 (500)
T PRK12296 201 -----------------V-QAGDTRFTVADVPGLIPGASEG------KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPL 256 (500)
T ss_pred -----------------E-EECCeEEEEEECCCCccccchh------hHHHHHHHHHHHhcCEEEEEECCcccccccCch
Confidence 1 1122468999999998644321 22333345678889988877765431 11
Q ss_pred ccHH-HHHHHHHhC-----------CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 192 ATSD-AMKLAREVD-----------PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 192 ~~~~-~l~la~~~d-----------~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
..-+ +...+..+. ..+.|.|+|+||+|+.+... ..+.+.......+..++.+++.+..++++++..+
T Consensus 257 ~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 257 SDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGWPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred hhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 1111 111122222 24689999999999975432 2222221111224568899999988887776655
Q ss_pred HHHHH
Q 007538 260 VARRK 264 (599)
Q Consensus 260 ~~~~~ 264 (599)
.....
T Consensus 336 ~ell~ 340 (500)
T PRK12296 336 AELVE 340 (500)
T ss_pred HHHHH
Confidence 54433
No 42
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.48 E-value=1.9e-13 Score=142.31 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=98.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-++.|++||.+|||||||||+|++......+...+|+.|..-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------- 198 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------- 198 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE-------------------------------------
Confidence 4678999999999999999999987633333445566662211
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+...+...++|+||||+...+..+ ..+.....++++++++++++++..+.+. ..+
T Consensus 199 -----------------v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e 255 (329)
T TIGR02729 199 -----------------VRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIE 255 (329)
T ss_pred -----------------EEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHH
Confidence 111223568999999997644321 2234445566778998888776554311 011
Q ss_pred ---HHHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 195 ---DAMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 195 ---~~l~la~~~d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.+.+....+.+ ...+.++|+||+|+.+... ..++.+.....++..++.+++.+..++++++..+
T Consensus 256 ~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I 324 (329)
T TIGR02729 256 DYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYAL 324 (329)
T ss_pred HHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHH
Confidence 12222333332 3689999999999976532 2222221111234568888988887776655433
No 43
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.48 E-value=2.8e-13 Score=126.45 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=96.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++++|||||+++|++..+.+......+...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEF-------------------------------------------- 37 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeE--------------------------------------------
Confidence 699999999999999999998876332221111000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l 197 (599)
....+.+. .....+.|||+||. +.+..+...++++++++|++++..+..-. ...++
T Consensus 38 --------~~~~~~~~-~~~~~l~l~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04113 38 --------GSKIIRVG-GKRVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWL 95 (161)
T ss_pred --------EEEEEEEC-CEEEEEEEEECcch-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00011111 12246789999997 34566778899999999888766553211 12344
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
...+.....+.++++|+||+|+........+.........+..|+.+++.++.++.+.+..+
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 44444445578999999999997644321222222222344779999999988877655433
No 44
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=3.7e-13 Score=143.84 Aligned_cols=160 Identities=20% Similarity=0.219 Sum_probs=96.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-++.|++||.+|||||||||+|++...-..+...+|+.|..-.
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~------------------------------------- 199 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV------------------------------------- 199 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE-------------------------------------
Confidence 3459999999999999999999987621123344555552111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc---cccc
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIAT 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~---d~~~ 193 (599)
+..++...++|+||||++..+..+ ..+.....++++++++++++++.++. +. .
T Consensus 200 -----------------v~~~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp-~ 255 (424)
T PRK12297 200 -----------------VETDDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDP-I 255 (424)
T ss_pred -----------------EEEeCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCCh-H
Confidence 111224568999999998644321 22333345567779998887776543 21 1
Q ss_pred HH---HHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 194 SD---AMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 194 ~~---~l~la~~~d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.+ +...+..+.+ .+.+.++|+||+|+.+......++.+ .+...++.+++.+..++++++..+..
T Consensus 256 e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~----~l~~~i~~iSA~tgeGI~eL~~~L~~ 324 (424)
T PRK12297 256 EDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKE----KLGPKVFPISALTGQGLDELLYAVAE 324 (424)
T ss_pred HHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHH----HhCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 22 2223333443 36899999999998432211222211 12256788888888777766555443
No 45
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.47 E-value=4.3e-13 Score=125.19 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=93.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|+++|||||+++++++..+-+......+... .
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~---~---------------------------------------- 38 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDF---K---------------------------------------- 38 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEE---E----------------------------------------
Confidence 699999999999999999999875221111111000 0
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH---H
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---A 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~---~ 196 (599)
...+.+. .....+.+||+||. ..+..+...+++.+|++|++++..+..- .+. +
T Consensus 39 ---------~~~~~~~-~~~~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~ 94 (164)
T smart00175 39 ---------TKTIEVD-GKRVKLQIWDTAGQ-------------ERFRSITSSYYRGAVGALLVYDITNRES-FENLKNW 94 (164)
T ss_pred ---------EEEEEEC-CEEEEEEEEECCCh-------------HHHHHHHHHHhCCCCEEEEEEECCCHHH-HHHHHHH
Confidence 0011111 11236789999996 4455678889999999988887654221 122 3
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
+.........+.|+++|+||+|+........+.........+..|+.+++..+.++++.+..+..
T Consensus 95 l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 95 LKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred HHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 33333333347899999999998753321111111112234466889999888877766555443
No 46
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.47 E-value=4.7e-13 Score=129.86 Aligned_cols=162 Identities=16% Similarity=0.139 Sum_probs=94.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++|+|||||++++++.+| +....+.+.....
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~------------------------------------------ 38 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLY------------------------------------------ 38 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccc------------------------------------------
Confidence 699999999999999999999876 3322222211100
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~~l 197 (599)
.. .+.+ ......+.||||||....+. ...+........+++.+|++|++++..+.+- . ...+.
T Consensus 39 -------~~--~i~~-~~~~~~l~i~Dt~G~~~~~~-----~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~ 103 (198)
T cd04142 39 -------RP--AVVL-SGRVYDLHILDVPNMQRYPG-----TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLR 103 (198)
T ss_pred -------ee--EEEE-CCEEEEEEEEeCCCcccCCc-----cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111 11124678999999854321 1222233445667899999988877654321 0 01122
Q ss_pred HHHHHh---CCCCCceEEEeccCCCCCCCCcHHHHHhCc-ccccCCCeEEEEcCChhhhccCCCHH
Q 007538 198 KLAREV---DPTGERTFGVLTKLDLMDKGTNALDVLEGR-SYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~~---d~~g~rti~VltK~Dl~~~~~~~~~~~~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+..... .+.+.|+++|.||+|+.+......+..... ....+.+|+.+++.++.++++++..+
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i 169 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKEL 169 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHH
Confidence 222222 245789999999999965432212212111 11245789999999998887766433
No 47
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=6.1e-13 Score=128.91 Aligned_cols=166 Identities=20% Similarity=0.313 Sum_probs=93.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc--ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
+|++||.+||||||++|+|+|.+.+.++.. .+|+.+ +..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~---~~~------------------------------------ 42 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTC---QKE------------------------------------ 42 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCccccc---cee------------------------------------
Confidence 699999999999999999999976554431 233222 000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--H
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--D 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~--~ 195 (599)
........+++|||||+.+... ..+++...+...+......++++++++ ++.. +... .
T Consensus 43 ----------------~~~~~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~~illVi-~~~~-~t~~d~~ 102 (196)
T cd01852 43 ----------------SAVWDGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPHAFLLVV-PLGR-FTEEEEQ 102 (196)
T ss_pred ----------------eEEECCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCEEEEEEE-ECCC-cCHHHHH
Confidence 0011346789999999987532 123344444444444556788776654 5554 4222 2
Q ss_pred HHHHHHHhCCC--CCceEEEeccCCCCCCCCcHHHHHhCc-------ccccCCCeEEEEcCC-----hhhhccCCCHHHH
Q 007538 196 AMKLAREVDPT--GERTFGVLTKLDLMDKGTNALDVLEGR-------SYRLQHPWVGIVNRS-----QADINRNIDMIVA 261 (599)
Q Consensus 196 ~l~la~~~d~~--g~rti~VltK~Dl~~~~~~~~~~~~~~-------~~~l~~g~~~v~~~s-----~~~i~~~~~~~~~ 261 (599)
.++..+++-.. ..++++|+|+.|....+ ...+.+... ....+..|+...++. +..+.+++..++.
T Consensus 103 ~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~ 181 (196)
T cd01852 103 AVETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVES 181 (196)
T ss_pred HHHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHH
Confidence 23333333221 26899999999988654 233332221 112223355555554 2344455555555
Q ss_pred HHHH
Q 007538 262 RRKE 265 (599)
Q Consensus 262 ~~~E 265 (599)
...|
T Consensus 182 ~~~~ 185 (196)
T cd01852 182 MVKE 185 (196)
T ss_pred HHHh
Confidence 5554
No 48
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=6.3e-13 Score=145.82 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=102.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..|+|+|||.+|+|||||+|+|+|..+. .+...|
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~-----~v~~~~----------------------------------------- 70 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA-----VVEDVP----------------------------------------- 70 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc-----cccCCC-----------------------------------------
Confidence 6799999999999999999999997641 111111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
+++.+.+...+. .....+.||||||+... ...+.+.+...+..|++.+|++|+|++..+. . +...
T Consensus 71 -------gvT~d~~~~~~~-~~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~-~-s~~~ 135 (472)
T PRK03003 71 -------GVTRDRVSYDAE-WNGRRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTADAVLFVVDATVG-A-TATD 135 (472)
T ss_pred -------CCCEeeEEEEEE-ECCcEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEECCCC-C-CHHH
Confidence 011111111111 12346899999998532 1225567788888999999998887765443 2 2222
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
..++..+...+.|+++|+||+|+.....+..+. +.+++ ..+.+++.++.++++++..+...
T Consensus 136 ~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 136 EAVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred HHHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 345555555689999999999986533222221 22223 24689999998888777655543
No 49
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.47 E-value=2.1e-13 Score=142.52 Aligned_cols=164 Identities=18% Similarity=0.292 Sum_probs=103.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+..+|+|||.||+|||||+|+|+|.+- .++...|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCC-----------------------------------------
Confidence 467999999999999999999999975 2222222
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
|.+.+.|...+. .+...+.||||.|+-+...-. +.++..--.-+...|..+++++| |.++..++ +...
T Consensus 211 -------GTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~--e~~E~~Sv~rt~~aI~~a~vvll-viDa~~~~-~~qD 278 (444)
T COG1160 211 -------GTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKIT--ESVEKYSVARTLKAIERADVVLL-VIDATEGI-SEQD 278 (444)
T ss_pred -------CccccceeeeEE-ECCeEEEEEECCCCCcccccc--cceEEEeehhhHhHHhhcCEEEE-EEECCCCc-hHHH
Confidence 233445554444 346789999999997744321 11111111234556888997766 55677777 4555
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHH----hCcccccC-CCeEEEEcCChhhhccCCCH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVL----EGRSYRLQ-HPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~----~~~~~~l~-~g~~~v~~~s~~~i~~~~~~ 258 (599)
++++..+...|..+++|+||||+++..+...+.. +-....+. .+.+.+++..+.++..+++.
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~ 345 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEA 345 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHH
Confidence 6799999999999999999999998743222222 21112211 23455666666665554443
No 50
>PRK04213 GTP-binding protein; Provisional
Probab=99.46 E-value=3.6e-13 Score=130.85 Aligned_cols=162 Identities=20% Similarity=0.277 Sum_probs=91.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccc-cccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|+++|.+|+|||||+|+|+|..+ +.+. ..+|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 567999999999999999999999864 2221 1112111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc-C---CCeEEEEEecCCcc-
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-K---PNSVILAISPANQD- 190 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~---~~~iIL~v~~a~~d- 190 (599)
..+.+ .++++|||||+...... ++...+.++.++..|+. . .+.+++++++....
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 11111 16899999997432211 22234667777777765 3 34555555433210
Q ss_pred ----cc----cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCccc--cc---CCCeEEEEcCChhhhccCC
Q 007538 191 ----IA----TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSY--RL---QHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 191 ----~~----~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~--~l---~~g~~~v~~~s~~~i~~~~ 256 (599)
+. ......+...+...+.|.++|+||+|+.+.... ..++...... +. ...++.+++.++ ++++++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~ 184 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELK 184 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHH
Confidence 00 111223334333457899999999999754311 1222111000 10 124688999988 887766
Q ss_pred CHHHH
Q 007538 257 DMIVA 261 (599)
Q Consensus 257 ~~~~~ 261 (599)
..+..
T Consensus 185 ~~l~~ 189 (201)
T PRK04213 185 EAIRK 189 (201)
T ss_pred HHHHH
Confidence 55443
No 51
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.46 E-value=3.7e-13 Score=125.73 Aligned_cols=107 Identities=14% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHH-HHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMK-LAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~-la~~~d~~g~rti~VltK 216 (599)
..+.+|||||.. .+..+...|++.+++++++++..+..- ....+.. +.+.....+.|+++|+||
T Consensus 50 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 116 (164)
T cd04145 50 AILDILDTAGQE-------------EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK 116 (164)
T ss_pred EEEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 457899999972 345677789999999988876554221 0112222 222234457899999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+|+.+................+..|+.+++.++.++++.+..+
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 117 ADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred ccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 9997643211111111122345678999999988887665433
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.46 E-value=3.9e-13 Score=125.81 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=91.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++|||||||+|++++..+ +.....++....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~------------------------------------------- 37 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSY------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhE-------------------------------------------
Confidence 799999999999999999998875 222111110000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~l 197 (599)
...+.+ ......+.+|||||.. .+..+...|++.+++++++++..+.. + ....+.
T Consensus 38 ---------~~~~~~-~~~~~~l~i~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T smart00173 38 ---------RKQIEI-DGEVCLLDILDTAGQE-------------EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFR 94 (164)
T ss_pred ---------EEEEEE-CCEEEEEEEEECCCcc-------------cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 000111 1123467899999973 33556777899999988877654321 1 011222
Q ss_pred HHH-HHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 198 KLA-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 198 ~la-~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
... +.......|+++|+||+|+.+......+.........+.+|+.+++.++.++++.+..+.
T Consensus 95 ~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 95 EQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 222 222334679999999999976432111111111223346799999999888876655443
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.46 E-value=3.9e-13 Score=125.91 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=92.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++|||||||+++++...+ +.....++....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~------------------------------------------ 38 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSY------------------------------------------ 38 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheE------------------------------------------
Confidence 3799999999999999999986654 222211111110
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~ 196 (599)
...+.+. .....+.||||||. +....+...|++++++++++++..+.. +. ...+
T Consensus 39 ----------~~~~~~~-~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~ 94 (164)
T cd04175 39 ----------RKQVEVD-GQQCMLEILDTAGT-------------EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDL 94 (164)
T ss_pred ----------EEEEEEC-CEEEEEEEEECCCc-------------ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHH
Confidence 0111121 12356789999997 334567777999999998887654321 11 1122
Q ss_pred HHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+..... ....+.|+++|+||+|+.+......+........++..|+.++++++.++++.+..+
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 95 REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred HHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 222222 234568999999999997543211111111122344678999999888877665544
No 54
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.46 E-value=5e-13 Score=124.66 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=66.3
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.||||||. +....+...|++.+++++++++..+.+. ....++...+... .+.|+++|+||.
T Consensus 51 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQ-------------EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCch-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECh
Confidence 46889999996 4556778889999999888776544321 0122333333222 368999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
|+.+......+........++.+|+.++++.+.++++.+..
T Consensus 117 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 117 DLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99764432112111112234567899999888777655443
No 55
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.45 E-value=8.2e-13 Score=123.59 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=67.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--HHHHHHHHHhCCCCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--~~~l~la~~~d~~g~rti~VltK 216 (599)
...+.+|||||. +....+...+++++|+++++++..+...-. ..++....... .+.+.++|+||
T Consensus 51 ~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 116 (164)
T cd04101 51 TVELFIFDSAGQ-------------ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNK 116 (164)
T ss_pred EEEEEEEECCCH-------------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 356889999996 555678888999999998877654322111 23333334333 35899999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+|+.+................+..|+.+++..+.++++.+..+
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 117 MDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred cccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9997543221111111122334578899998888877655443
No 56
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.45 E-value=9.2e-13 Score=123.63 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=91.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.++|+++|.+++||||++|+|+|..+.+.+....|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRD------------------------------------------ 39 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccC------------------------------------------
Confidence 46899999999999999999999864222221111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l 197 (599)
.. ...+. ....++++|||||+...... ..............++..+|+++++++. +... +....
T Consensus 40 -------~~--~~~~~---~~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~d~-~~~~-~~~~~ 103 (174)
T cd01895 40 -------SI--DVPFE---YDGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVIDA-TEGI-TEQDL 103 (174)
T ss_pred -------ce--eeEEE---ECCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEEeC-CCCc-chhHH
Confidence 00 00111 12345889999999754211 1111111112234567889988777654 3333 23344
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcH----HHHHhCcccc-cCCCeEEEEcCChhhhccCC
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNA----LDVLEGRSYR-LQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~----~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~ 256 (599)
.+.+.....+.+.++|+||+|+.+..... .+.+...... ....++.+++.++.++.+.+
T Consensus 104 ~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 104 RIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLF 167 (174)
T ss_pred HHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHH
Confidence 45555555678999999999998653211 1222211111 12467888888877765543
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=7.8e-13 Score=124.10 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=93.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||++++.+..+.+... .|.. +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~-~~~~-------------------------------------- 41 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIG-VDFT-------------------------------------- 41 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--Cccc-eEEE--------------------------------------
Confidence 4689999999999999999999876522111 1100 0000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
...+.+ ......+.||||||. +....+...+++.+|+++++++..+... ....
T Consensus 42 -----------~~~~~~-~~~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~ 96 (165)
T cd01864 42 -----------MKTLEI-EGKRVKLQIWDTAGQ-------------ERFRTITQSYYRSANGAIIAYDITRRSSFESVPH 96 (165)
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCh-------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHH
Confidence 001111 111246899999995 4456778889999999988876655321 1134
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccC-CCeEEEEcCChhhhccCCC
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNID 257 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~~ 257 (599)
++.......+.+.+.++|+||+|+........+.........+ ..++.+++.++.++++.+.
T Consensus 97 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 97 WIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 5555555555678899999999997654321111111111222 3578888888777665443
No 58
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.45 E-value=5e-13 Score=130.79 Aligned_cols=125 Identities=26% Similarity=0.319 Sum_probs=85.6
Q ss_pred cCCCeEE-EECCCCCCHHHHHHHhhCCCCCccc-ccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHH
Q 007538 36 EALPSVA-VVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (599)
Q Consensus 36 ~~lP~Iv-VvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (599)
..-|..+ ++|..|+||||++|||++.+.-|.. -+.||+.++...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~---------------------------------- 81 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR---------------------------------- 81 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH----------------------------------
Confidence 3556665 9999999999999999976665555 445665552211
Q ss_pred HHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC-cccc
Q 007538 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN-QDIA 192 (599)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~-~d~~ 192 (599)
...+...|+||||||+.+.. +-...++..+..|+.+.|.+ |++.++. .++.
T Consensus 82 ---------------------~~~~~~~l~lwDtPG~gdg~------~~D~~~r~~~~d~l~~~DLv-L~l~~~~draL~ 133 (296)
T COG3596 82 ---------------------LSYDGENLVLWDTPGLGDGK------DKDAEHRQLYRDYLPKLDLV-LWLIKADDRALG 133 (296)
T ss_pred ---------------------hhccccceEEecCCCcccch------hhhHHHHHHHHHHhhhccEE-EEeccCCCcccc
Confidence 11234789999999996533 23367889999999999965 5555554 3443
Q ss_pred cHHHHHHHHHhCC--CCCceEEEeccCCCCCCCC
Q 007538 193 TSDAMKLAREVDP--TGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 193 ~~~~l~la~~~d~--~g~rti~VltK~Dl~~~~~ 224 (599)
+ ...+++.+.- .+.|+++|+|.+|...++.
T Consensus 134 ~--d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 134 T--DEDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred C--CHHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 3 3345554432 2389999999999987763
No 59
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.45 E-value=6.4e-13 Score=128.03 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=73.6
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhC---CCCCceEEEe
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVD---PTGERTFGVL 214 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d---~~g~rti~Vl 214 (599)
..+.||||||. +.+..+...|++.+|++|++++..+... ....++....... +.+.|+++|+
T Consensus 47 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 47 CMLEVLDTAGQ-------------EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEEECCCc-------------hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 35889999996 3445677789999999988876544321 1123333343333 2467999999
Q ss_pred ccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHHHhHh
Q 007538 215 TKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYF 269 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff 269 (599)
||+|+.+......+.........+..|+.+++.++.++++.+..+.....+..-.
T Consensus 114 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 114 NKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred EChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 9999975332111111111223446789999999999888877666554444333
No 60
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.45 E-value=5.6e-13 Score=123.96 Aligned_cols=153 Identities=14% Similarity=0.190 Sum_probs=92.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++|+|||||++++++..|.+ ....++ ...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~-~~~~t~-~~~------------------------------------------ 37 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTI-EDS------------------------------------------ 37 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC-CcCCcc-hhe------------------------------------------
Confidence 379999999999999999999987622 111111 000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~~~ 196 (599)
+ ...+.+. .....+.+|||||. +.+..+...|++.+++++++++..+.. +.. ..+
T Consensus 38 ------~---~~~~~~~-~~~~~~~i~Dt~G~-------------~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~ 94 (162)
T cd04138 38 ------Y---RKQVVID-GETCLLDILDTAGQ-------------EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTY 94 (162)
T ss_pred ------E---EEEEEEC-CEEEEEEEEECCCC-------------cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 0 0001111 11234778999996 345667888999999988877654322 111 122
Q ss_pred HH-HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MK-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~-la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.. +.+.....+.|+++|+||+|+........+ .......++..|+.+++.++.++++.+..+
T Consensus 95 ~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 95 REQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQ-GQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccceecHHH-HHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 22 223333457899999999999764322111 111112345578999999998887765443
No 61
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.44 E-value=6.1e-13 Score=126.60 Aligned_cols=108 Identities=13% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhC-CCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVD-PTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d-~~g~rti~VltK 216 (599)
..+.||||||. +....+...|+++++++|++++..+.+- ....++...+... ..+.++++|.||
T Consensus 63 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 129 (180)
T cd04127 63 IHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNK 129 (180)
T ss_pred EEEEEEeCCCh-------------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 45789999996 5567788899999999988876544221 1122333333222 235789999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+|+.+......+.........+..|+.+++.++.++++.+..+.
T Consensus 130 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 130 ADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred ccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99976432111112211223456789999998888877665544
No 62
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.3e-13 Score=125.89 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=110.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+||++|+||+|||||++...-..| -+.. .
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~Y----------------------q------------------------- 52 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTY----------------------Q------------------------- 52 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccc----------------------c-------------------------
Confidence 446999999999999999999997766 1111 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc--ccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~--d~~~~ 194 (599)
...|.+|..+.+. +.+. ...|.||||.|. +.++.++..|++++.++|+|.+-.+. -..+.
T Consensus 53 --ATIGiDFlskt~~--l~d~-~vrLQlWDTAGQ-------------ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~ 114 (221)
T KOG0094|consen 53 --ATIGIDFLSKTMY--LEDR-TVRLQLWDTAGQ-------------ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTS 114 (221)
T ss_pred --ceeeeEEEEEEEE--EcCc-EEEEEEEecccH-------------HHHhhhhhhhccCCeEEEEEEeccccchHHHHH
Confidence 0112233333333 2222 467999999998 88999999999999998887655443 34456
Q ss_pred HHHHHHHHhCCC-CCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 195 DAMKLAREVDPT-GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 195 ~~l~la~~~d~~-g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.|+.-++.-... +..+++|.||.||.++..-....-......++.-|..+++..+.++..++..+.+...+
T Consensus 115 kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 115 KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 677666554444 46788999999999875322222222334556678899999998887766665555443
No 63
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.44 E-value=6.7e-13 Score=125.02 Aligned_cols=157 Identities=15% Similarity=0.235 Sum_probs=92.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|.++||||||+|++++..+.+.....++..+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~------------------------------------------- 38 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------------------------------------- 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEE-------------------------------------------
Confidence 7999999999999999999998753222111111000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc-HHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-SDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~-~~~l 197 (599)
...+.+. .....+.+||+||. +....+...|+++++++|++++..+... .. ..+.
T Consensus 39 ---------~~~~~~~-~~~~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 95 (172)
T cd01862 39 ---------TKEVTVD-DKLVTLQIWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWR 95 (172)
T ss_pred ---------EEEEEEC-CEEEEEEEEeCCCh-------------HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0001111 11245789999996 3345677789999999988876543211 11 1121
Q ss_pred H-HHHHhC---CCCCceEEEeccCCCCCCCCcHHHHHhCcccccC-CCeEEEEcCChhhhccCCCHHHHH
Q 007538 198 K-LAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 198 ~-la~~~d---~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
. +..... +.+.|+++|+||+|+.++.....+.........+ ..++.+++..+.++++.+..+...
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 1 223333 3478999999999998533211111111112222 578999999988877666554443
No 64
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.44 E-value=9.4e-13 Score=128.02 Aligned_cols=156 Identities=14% Similarity=0.183 Sum_probs=99.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|+.++||||+++++.+..| +.... +|-
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~-~Ti---------------------------------------------- 33 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACK-SGV---------------------------------------------- 33 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCC-Ccc----------------------------------------------
Confidence 799999999999999999998776 22111 110
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l 197 (599)
+.++.... +.+. .....+.||||||. +.+..+...|+++++++|+|++..+.+- ....|+
T Consensus 34 --~~~~~~~~--i~~~-~~~v~l~iwDtaGq-------------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~ 95 (202)
T cd04120 34 --GVDFKIKT--VELR-GKKIRLQIWDTAGQ-------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM 95 (202)
T ss_pred --eeEEEEEE--EEEC-CEEEEEEEEeCCCc-------------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 00011111 1121 12356889999997 5567788999999999999877655321 113455
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccc-cCCCeEEEEcCChhhhccCCCHHHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYR-LQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
...+.....+.++++|.||+|+.+............... .+..|+.+++.++.++++.+..+..
T Consensus 96 ~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 96 KMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred HHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 556665566789999999999975332111111111111 2456899999999888877655443
No 65
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.44 E-value=9.8e-13 Score=122.84 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=92.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|+++||||||+|++++.++.+.... .+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~-------------------------------------------- 37 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQES-TIGAA-------------------------------------------- 37 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCC-cccee--------------------------------------------
Confidence 799999999999999999999986331111 11000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~l 197 (599)
+.. ..+.+. .....+.+||+||. +....+...|++.++++|++++..+.+ +. ...++
T Consensus 38 -----~~~--~~v~~~-~~~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 96 (163)
T cd01860 38 -----FLT--QTVNLD-DTTVKFEIWDTAGQ-------------ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWV 96 (163)
T ss_pred -----EEE--EEEEEC-CEEEEEEEEeCCch-------------HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 000 001111 11245789999995 344566777899999998887765432 11 12233
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
..++.....+.++++|+||+|+.+......+.........+..|+.+++.++.++.+.+..+
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred HHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 33334443467899999999987433211111111122334678999999888776655443
No 66
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.44 E-value=8.9e-13 Score=122.95 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=93.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|.+|||||||++++++..+ +.+....+.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~------------------------------------------ 38 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYR------------------------------------------ 38 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEE------------------------------------------
Confidence 799999999999999999998875 3322221110000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~l 197 (599)
...........+.+|||||.. .+..+...+++..++++++++..+.+ + ....+.
T Consensus 39 -----------~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T cd04139 39 -----------KKVVLDGEDVQLNILDTAGQE-------------DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFR 94 (164)
T ss_pred -----------EEEEECCEEEEEEEEECCChh-------------hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 000111123458899999972 34556777899999988877644322 1 112233
Q ss_pred HHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 198 KLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 198 ~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
...... ...+.|.++|+||+|+.+...............++.+|+.++++++.++++.+..+.
T Consensus 95 ~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 95 EQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred HHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 223332 345789999999999986322211111112223456899999999988877665443
No 67
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.44 E-value=2.2e-13 Score=134.17 Aligned_cols=169 Identities=17% Similarity=0.279 Sum_probs=106.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccc-cccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T-r~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-+|+|||.||+|||||.|.++|.++.|++.-+-| |+
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~------------------------------------------ 109 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH------------------------------------------ 109 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceee------------------------------------------
Confidence 34899999999999999999999999555443222 11
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~~~ 195 (599)
++. .|...+..++.|+||||+......-+.. ....+..-....+.++|+++++++.++.. .-...
T Consensus 110 ~il-------------gi~ts~eTQlvf~DTPGlvs~~~~r~~~-l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~ 175 (379)
T KOG1423|consen 110 RIL-------------GIITSGETQLVFYDTPGLVSKKMHRRHH-LMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR 175 (379)
T ss_pred eee-------------EEEecCceEEEEecCCcccccchhhhHH-HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH
Confidence 111 2555667899999999998754331111 11111223455688999988777666422 22345
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcH---HHHHhCc--------------------ccccCCCe------EEEEc
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNA---LDVLEGR--------------------SYRLQHPW------VGIVN 246 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~---~~~~~~~--------------------~~~l~~g~------~~v~~ 246 (599)
.+...+.+. ..+.|+|+||+|...+.... .+.+.+. .++-..|| |.|++
T Consensus 176 vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSa 253 (379)
T KOG1423|consen 176 VLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSA 253 (379)
T ss_pred HHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEec
Confidence 666777665 47899999999987665432 1111111 12222344 78999
Q ss_pred CChhhhccCCCHHHHHHH
Q 007538 247 RSQADINRNIDMIVARRK 264 (599)
Q Consensus 247 ~s~~~i~~~~~~~~~~~~ 264 (599)
.++.|+.++...+.....
T Consensus 254 L~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 254 LYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred ccccCHHHHHHHHHhcCC
Confidence 999998877666555433
No 68
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.44 E-value=8.9e-13 Score=143.83 Aligned_cols=156 Identities=21% Similarity=0.297 Sum_probs=106.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+++|+||+||||++|+|+|.+. .+...| +.+.+ +.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------~VgNwp---------GvTVE---------------------------kk 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------KVGNWP---------GVTVE---------------------------KK 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------eecCCC---------CeeEE---------------------------EE
Confidence 3699999999999999999999874 222222 11111 11
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.| .......++++|||||+++..... .+ +..+++|+. ++|+||-+|+++| .+..
T Consensus 42 eg-------------~~~~~~~~i~ivDLPG~YSL~~~S----~D---E~Var~~ll~~~~D~ivnVvDAtn----LeRn 97 (653)
T COG0370 42 EG-------------KLKYKGHEIEIVDLPGTYSLTAYS----ED---EKVARDFLLEGKPDLIVNVVDATN----LERN 97 (653)
T ss_pred EE-------------EEEecCceEEEEeCCCcCCCCCCC----ch---HHHHHHHHhcCCCCEEEEEcccch----HHHH
Confidence 11 122234569999999998865431 22 455788876 4788877666555 5677
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
+.+.-++-+-|.++++++|++|...+.....|. ......++.+.+++++..++++++.+..+..
T Consensus 98 LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~-~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 98 LYLTLQLLELGIPMILALNMIDEAKKRGIRIDI-EKLSKLLGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccH-HHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 888888888899999999999998765432221 1123567889999999999988776654443
No 69
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.44 E-value=6.7e-13 Score=122.39 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=91.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+++|.++|||||++|++++..+.+.... |..+ .
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~--t~~~---~--------------------------------------- 36 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKS--TIGV---D--------------------------------------- 36 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCC--ceee---e---------------------------------------
Confidence 3799999999999999999999876332111 1000 0
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~ 196 (599)
.....+.+. ....++.+||+||. ..+..+...+++++|++|++++..+.+ +. ...+
T Consensus 37 --------~~~~~~~~~-~~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~ 94 (159)
T cd00154 37 --------FKSKTIEID-GKTVKLQIWDTAGQ-------------ERFRSITPSYYRGAHGAILVYDITNRESFENLDKW 94 (159)
T ss_pred --------eEEEEEEEC-CEEEEEEEEecCCh-------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 001111111 12356889999997 445667888999999998877654422 10 1223
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~ 256 (599)
+.........+.++++|+||+|+........+.........+..|+.+++..+.++++.+
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 333433333468999999999997322211111111112245678889888877766544
No 70
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.43 E-value=6e-13 Score=124.11 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=61.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l~la~~~d~~g~rti~VltK 216 (599)
...+.+|||||. +.+...+..++..+|+++++++.. .++. ..+.+.+++... ..++++|+||
T Consensus 50 ~~~~~~~DtpG~-------------~~~~~~~~~~~~~ad~ii~V~d~~-~~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGH-------------EKFIKNMLAGAGGIDLVLLVVAAD-EGIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCCh-------------HHHHHHHHhhhhcCCEEEEEEECC-CCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 457899999997 233445567888999987776643 3221 122233333321 2489999999
Q ss_pred CCCCCCCC------cHHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 217 LDLMDKGT------NALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 217 ~Dl~~~~~------~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
+|+.+... +..+.+.... .....++.+++.++.++++.+.
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 114 ADLVDEDWLELVEEEIRELLAGTF-LADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEeCCCCcCHHHHHH
Confidence 99976421 1112221100 0245789999998888766543
No 71
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.43 E-value=7.5e-13 Score=130.22 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=96.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|++||++|+|||||++++++..| +.....+. . +.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~-~---~d---------------------------------------- 36 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTI-G---LD---------------------------------------- 36 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCce-e---EE----------------------------------------
Confidence 699999999999999999998875 22221100 0 00
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l 197 (599)
+. ...+.+.+.....+.||||||. +....+...|++++|++|++++..+... ....|+
T Consensus 37 -----~~--~~~i~~~~~~~~~~~i~Dt~G~-------------~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~ 96 (215)
T cd04109 37 -----FF--SKRVTLPGNLNVTLQVWDIGGQ-------------SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWY 96 (215)
T ss_pred -----EE--EEEEEeCCCCEEEEEEEECCCc-------------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0011121212356889999996 4456778889999999988877554321 112344
Q ss_pred HHHHHhCC---CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 198 KLAREVDP---TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 198 ~la~~~d~---~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
..+....+ .+.++++|.||+|+........+.........+.+|+.+++.++.++++.+..+...
T Consensus 97 ~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 97 SMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred HHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44444432 345789999999997533211111111122344678999999998888776655543
No 72
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.43 E-value=1.4e-12 Score=143.12 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=99.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCc-ccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLP-RGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP-~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|++||.+|+|||||+|+|+|.++.. .....+|+-+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~--------------------------------------- 250 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPV--------------------------------------- 250 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcc---------------------------------------
Confidence 56899999999999999999999987521 11122222221
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCcccccH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
...+.. +...+.||||||+.+.... ....+.+..+ ...+++.+|++|+|++.. ... +.
T Consensus 251 ---------------~~~~~~-~~~~~~l~DTaG~~~~~~~---~~~~e~~~~~~~~~~i~~ad~vilV~Da~-~~~-s~ 309 (472)
T PRK03003 251 ---------------DSLIEL-GGKTWRFVDTAGLRRRVKQ---ASGHEYYASLRTHAAIEAAEVAVVLIDAS-EPI-SE 309 (472)
T ss_pred ---------------eEEEEE-CCEEEEEEECCCccccccc---cchHHHHHHHHHHHHHhcCCEEEEEEeCC-CCC-CH
Confidence 101111 2345789999998653221 1112333333 345789999998877644 333 34
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCcccc-cCCCeEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYR-LQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
..+.++..+...+.++|+|+||+|+.+.... ..+.+...... ...+++.+++.++.++++.+..+..
T Consensus 310 ~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 310 QDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4445666666678999999999999853221 11111111111 1246788899888888776655543
No 73
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.43 E-value=1.1e-12 Score=142.57 Aligned_cols=155 Identities=20% Similarity=0.251 Sum_probs=102.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcc-cccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPR-GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~-~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
+|++||.+|+|||||+|+|+|...... ....+||-+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~------------------------------------------- 37 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDR------------------------------------------- 37 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCc-------------------------------------------
Confidence 489999999999999999999764111 112223222
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
....+.. +...+.||||||+... ...+.+.+...+..+++.+|+++++++ +.... +.....
T Consensus 38 -----------~~~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~vvD-~~~~~-~~~d~~ 98 (429)
T TIGR03594 38 -----------KYGDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILFVVD-GREGL-TPEDEE 98 (429)
T ss_pred -----------eEEEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEEEEe-CCCCC-CHHHHH
Confidence 1111111 2346899999998532 233557788889999999998877665 44444 333344
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHHH
Q 007538 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 199 la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
+++.+...+.++++|+||+|+.+......+ ...++. .++.+++..+.+++++++....
T Consensus 99 i~~~l~~~~~piilVvNK~D~~~~~~~~~~-----~~~lg~~~~~~vSa~~g~gv~~ll~~i~~ 157 (429)
T TIGR03594 99 IAKWLRKSGKPVILVANKIDGKKEDAVAAE-----FYSLGFGEPIPISAEHGRGIGDLLDAILE 157 (429)
T ss_pred HHHHHHHhCCCEEEEEECccCCcccccHHH-----HHhcCCCCeEEEeCCcCCChHHHHHHHHH
Confidence 566665568899999999999865433322 234455 5789999998887766655443
No 74
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.43 E-value=1.4e-12 Score=121.19 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=92.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|.+++||||++|++++..+.+.... .+.......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~---------------------------------------- 40 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHES-TTQASFFQK---------------------------------------- 40 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCC-ccceeEEEE----------------------------------------
Confidence 699999999999999999999876322111 111110000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l 197 (599)
.+ .+. .....+.+||+||. +....+...|++++++++++++..+.+.. ...++
T Consensus 41 ---------~~--~~~-~~~~~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 95 (162)
T cd04123 41 ---------TV--NIG-GKRIDLAIWDTAGQ-------------ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWI 95 (162)
T ss_pred ---------EE--EEC-CEEEEEEEEECCch-------------HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 111 11235889999995 34456677788999999888765543321 12233
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
...+...+.+.++++|+||+|+........+.........+..++.++++++.++.+.+..+
T Consensus 96 ~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 96 KELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 33444445578999999999997543211111111122345668889999888877655543
No 75
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.42 E-value=1.8e-12 Score=140.93 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=99.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCccc-ccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|+|+|.+|+|||||+|+|+|.+..+.+ ...+|+.+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~---------------------------------------- 210 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS---------------------------------------- 210 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc----------------------------------------
Confidence 4568999999999999999999998642221 11122221
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
+...+.. +...++||||||+.+.... .+.+.......+..+++.+|++|+|++.. ... +..
T Consensus 211 --------------~~~~~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilV~D~~-~~~-~~~ 271 (429)
T TIGR03594 211 --------------IDIPFER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLLVLDAT-EGI-TEQ 271 (429)
T ss_pred --------------EeEEEEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEEEEECC-CCc-cHH
Confidence 1111111 2346899999999654321 11122222233456899999988876544 444 344
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcH---HHHHhCccccc-CCCeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNA---LDVLEGRSYRL-QHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~---~~~~~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
..++++.+...+.+.|+|+||+|+.+..... .+.+......+ ..+++.+++.++.++.+.+..+.
T Consensus 272 ~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 272 DLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred HHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 4566676666789999999999998322111 12222111111 25678888888887766554433
No 76
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.42 E-value=1.5e-12 Score=123.25 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=97.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|++||++++|||||++++++..| +....+....- ..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~--~~---------------------------------------- 38 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVD--FE---------------------------------------- 38 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeE--EE----------------------------------------
Confidence 699999999999999999999876 32221111000 00
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~l 197 (599)
...+.+.+ ....+.||||||. +....+...|++++|++++|++..+.+ +. ...|+
T Consensus 39 ---------~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 39 ---------MERFEILG-VPFSLQLWDTAGQ-------------ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWL 95 (170)
T ss_pred ---------EEEEEECC-EEEEEEEEeCCCh-------------HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 01111211 1346889999997 455677888999999998877654422 11 12333
Q ss_pred HHH-HHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 198 KLA-REVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 198 ~la-~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
... +...+...++++|.||.|+.+.... ..+........++..|+.+++.++.++++.+..+.+...|
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333 2234445678999999998654321 1111111122345678899999988888777666555433
No 77
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=1.8e-12 Score=141.22 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=99.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCc-ccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLP-RGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP-~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.|+|++||.+|+|||||+|+|+|..... .....+|+-.
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~----------------------------------------- 39 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDR----------------------------------------- 39 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccc-----------------------------------------
Confidence 3789999999999999999999986411 1111112111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
..-.+.. +...+.||||||+... ..+....+...+..++..+|+++++++..+ .. +...
T Consensus 40 -------------~~~~~~~-~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~vvd~~~-~~-~~~~ 98 (435)
T PRK00093 40 -------------IYGEAEW-LGREFILIDTGGIEPD-----DDGFEKQIREQAELAIEEADVILFVVDGRA-GL-TPAD 98 (435)
T ss_pred -------------eEEEEEE-CCcEEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHHH
Confidence 1101111 2367899999999652 112556677888889999999877776443 33 2222
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCC-eEEEEcCChhhhccCCCHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~ 260 (599)
..+++.+...+.++++|+||+|+.+......+. ..++.+ ++.+++.++.++++++..+.
T Consensus 99 ~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~I~ 158 (435)
T PRK00093 99 EEIAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDAIL 158 (435)
T ss_pred HHHHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHHHH
Confidence 334444444578999999999976532222222 234444 78899999888776665443
No 78
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.42 E-value=2.3e-12 Score=123.88 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=97.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++++|||||++++++..|-+... .|-.. ...
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~-~~~--------------------------------------- 38 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGV-DFK--------------------------------------- 38 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--Cceee-EEE---------------------------------------
Confidence 379999999999999999999987621111 11000 000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
...+.+. .....+.+|||||. +....+...++++++++|++++..+.+. ....+
T Consensus 39 ----------~~~~~~~-~~~~~~~i~Dt~g~-------------~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~ 94 (188)
T cd04125 39 ----------IKTVYIE-NKIIKLQIWDTNGQ-------------ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFW 94 (188)
T ss_pred ----------EEEEEEC-CEEEEEEEEECCCc-------------HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHH
Confidence 0011111 11346789999996 3456677889999999988877554321 11234
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
+...+...+...+.++|.||.|+.+................+..|+.+++.++.++++.+..+....
T Consensus 95 ~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 95 INEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred HHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4444444455678999999999975432111111111222345799999999988887776655443
No 79
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=1.7e-12 Score=122.03 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=93.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.+++|+|+|.+|+|||||++++++..+.|......+.....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------- 46 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI--------------------------------------- 46 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEE---------------------------------------
Confidence 46899999999999999999999766532211111100000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
..+.+. .....+.+||+||. .....+...|++.+++++++++..+.+- ...
T Consensus 47 -------------~~~~~~-~~~~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (169)
T cd04114 47 -------------KTVEIK-GEKIKLQIWDTAGQ-------------ERFRSITQSYYRSANALILTYDITCEESFRCLP 99 (169)
T ss_pred -------------EEEEEC-CEEEEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 001111 11235789999996 3345566779999999988876543221 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.++..++.....+.+.++|+||+|+.+...................++.+++.++.++.+.+..+
T Consensus 100 ~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 100 EWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 34444455555678899999999987543321111111111123457788888877766555443
No 80
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.41 E-value=3.4e-12 Score=117.91 Aligned_cols=147 Identities=24% Similarity=0.317 Sum_probs=88.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc-cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
+|+++|++++||||++|+|+|..+...+... +|+.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 38 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD-------------------------------------------- 38 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccc--------------------------------------------
Confidence 7999999999999999999998642211111 1110
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
.....+ ......+++|||||+...... .....-..+..++.++++++++++..+ .. .....+
T Consensus 39 ----------~~~~~~-~~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~-~~~~~~ 100 (157)
T cd04164 39 ----------VIEESI-DIGGIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVIDASR-GL-DEEDLE 100 (157)
T ss_pred ----------eEEEEE-EeCCEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEEECCC-CC-CHHHHH
Confidence 001111 122456899999998653211 222222345567788998877665443 22 233333
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 199 la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
+... ..+.++++|+||+|+.+.... ........++.+++..+.++.+++.
T Consensus 101 ~~~~--~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 101 ILEL--PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred HHHh--hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 4433 446899999999999865432 1122345678888877766654433
No 81
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.41 E-value=1.7e-12 Score=123.02 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=96.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++|+|||||++++.+..| |.....++. . .
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~-~---~---------------------------------------- 38 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIE-D---A---------------------------------------- 38 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCccc-c---e----------------------------------------
Confidence 799999999999999999998876 322111110 0 0
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~~l 197 (599)
+ ...+.+.+ ....+.||||||. ..+..+...|++.++++|++++..+..- . ..++.
T Consensus 39 -----~---~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~ 96 (172)
T cd04141 39 -----Y---KQQARIDN-EPALLDILDTAGQ-------------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK 96 (172)
T ss_pred -----E---EEEEEECC-EEEEEEEEeCCCc-------------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHH
Confidence 0 00111211 1246889999997 3456778889999999988876554321 1 12233
Q ss_pred HHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 198 KLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 198 ~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
...... ...+.|+++|.||+|+.+......+.........+.+|+.+++..+.++++.+..+..
T Consensus 97 ~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 97 KLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred HHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 444443 3346899999999998654321111111111234568999999999888877765543
No 82
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.41 E-value=1.5e-12 Score=121.35 Aligned_cols=107 Identities=13% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHHHHHHHH---hCCCCCceEEE
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAMKLARE---VDPTGERTFGV 213 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~la~~---~d~~g~rti~V 213 (599)
...+.+|||||. .....+...|+++++++|++++..+.. + ....++..+.. +...+.|+++|
T Consensus 44 ~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 110 (162)
T cd04157 44 NLSFTAFDMSGQ-------------GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF 110 (162)
T ss_pred CEEEEEEECCCC-------------HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE
Confidence 456899999997 345667788999999998877654421 1 01122322222 12347899999
Q ss_pred eccCCCCCCCCc--HHHHHhCcc-cccCCCeEEEEcCChhhhccCCCH
Q 007538 214 LTKLDLMDKGTN--ALDVLEGRS-YRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 214 ltK~Dl~~~~~~--~~~~~~~~~-~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
+||+|+.+.... ..+.+.-.. ......++.++++++.++++.+..
T Consensus 111 ~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~ 158 (162)
T cd04157 111 ANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQW 158 (162)
T ss_pred EeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHH
Confidence 999999754321 112111111 111224688999998888766543
No 83
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.41 E-value=1.5e-12 Score=114.96 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=74.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccc-ccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
+|+|+|.+|||||||+|+|+|.+..+.+ ...+|+.+.. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~--------------------------------------- 40 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-G--------------------------------------- 40 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-E---------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-e---------------------------------------
Confidence 5899999999999999999997543332 3345544411 1
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
...-+...+.|+||||+...... +........+.+.+...|.+++++. ++... ......
T Consensus 41 ---------------~~~~~~~~~~~vDtpG~~~~~~~----~~~~~~~~~~~~~~~~~d~ii~vv~-~~~~~-~~~~~~ 99 (116)
T PF01926_consen 41 ---------------QFEYNNKKFILVDTPGINDGESQ----DNDGKEIRKFLEQISKSDLIIYVVD-ASNPI-TEDDKN 99 (116)
T ss_dssp ---------------EEEETTEEEEEEESSSCSSSSHH----HHHHHHHHHHHHHHCTESEEEEEEE-TTSHS-HHHHHH
T ss_pred ---------------eeeeceeeEEEEeCCCCcccchh----hHHHHHHHHHHHHHHHCCEEEEEEE-CCCCC-CHHHHH
Confidence 00112455689999999763321 1101123345555688998877776 54433 344556
Q ss_pred HHHHhCCCCCceEEEecc
Q 007538 199 LAREVDPTGERTFGVLTK 216 (599)
Q Consensus 199 la~~~d~~g~rti~VltK 216 (599)
+.+++. .+.++++|+||
T Consensus 100 ~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 100 ILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHH-TTSEEEEEEES
T ss_pred HHHHHh-cCCCEEEEEcC
Confidence 667776 78999999998
No 84
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.41 E-value=4.2e-12 Score=145.38 Aligned_cols=160 Identities=20% Similarity=0.298 Sum_probs=99.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+++|.+|+|||||+|+|+|.+. ..+. .|
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn-----~p------------------------------------------- 34 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGN-----WA------------------------------------------- 34 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCC-----CC-------------------------------------------
Confidence 4799999999999999999999864 1111 11
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~d~~~~~~ 196 (599)
| .+-+...- ....+...+.+|||||+.+......+....+. +...|+. .+|+++++++..+. +..
T Consensus 35 -G----vTve~k~g-~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~---i~~~~l~~~~aD~vI~VvDat~l----er~ 101 (772)
T PRK09554 35 -G----VTVERKEG-QFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ---IACHYILSGDADLLINVVDASNL----ERN 101 (772)
T ss_pred -C----ceEeeEEE-EEEcCceEEEEEECCCccccccccccccHHHH---HHHHHHhccCCCEEEEEecCCcc----hhh
Confidence 0 00001111 11223457899999999875432112222333 3555654 78988776654432 233
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
+.+..++...+.|+++|+||+|+.++.....+ .+.....++.++++++++.++++++....+..
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id-~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRID-IDALSARLGCPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHH-HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 44555666678999999999999754332222 12223446778999999999888776655544
No 85
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.41 E-value=1.2e-12 Score=127.30 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=68.4
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHHHHHHHHHh----CCCCCceEEE
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREV----DPTGERTFGV 213 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~~l~la~~~----d~~g~rti~V 213 (599)
..+.||||||. +.+..+...|+++++++|++++..+... . ...++...... ...+.|+++|
T Consensus 50 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv 116 (201)
T cd04107 50 VRLQLWDIAGQ-------------ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLL 116 (201)
T ss_pred EEEEEEECCCc-------------hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence 46789999997 3456778889999999988876544221 0 01122222211 1245799999
Q ss_pred eccCCCCCCCCcHHHHHhCcccccC-CCeEEEEcCChhhhccCCCHHHHHH
Q 007538 214 LTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 214 ltK~Dl~~~~~~~~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.||.|+.+......+.+.......+ .+|+.+++.++.++++.+..+....
T Consensus 117 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 117 ANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999997422211111111112233 4789999999888887776655443
No 86
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.41 E-value=2.7e-12 Score=122.98 Aligned_cols=154 Identities=14% Similarity=0.251 Sum_probs=90.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|.+|||||||++++++..+.+. .+|.
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~---------------------------------------------- 35 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTK---------------------------------------------- 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCc---CCcc----------------------------------------------
Confidence 799999999999999999998765211 1110
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH---H
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---A 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~---~ 196 (599)
++....+.+.+.......+.+|||||. +.+..+...|+++++++|++++..+.+- ... +
T Consensus 36 ----~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~D~~~~~~-~~~~~~~ 97 (183)
T cd04152 36 ----GFNTEKIKVSLGNSKGITFHFWDVGGQ-------------EKLRPLWKSYTRCTDGIVFVVDSVDVER-MEEAKTE 97 (183)
T ss_pred ----ccceeEEEeeccCCCceEEEEEECCCc-------------HhHHHHHHHHhccCCEEEEEEECCCHHH-HHHHHHH
Confidence 011111122221223456899999997 4456678889999999988776544321 111 1
Q ss_pred H-HHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccc--cCCCeEEEEcCChhhhccCCCHHH
Q 007538 197 M-KLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYR--LQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 197 l-~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~--l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+ .+.+.....+.|+++|+||+|+.+... +....+...... ....++.+++.++.++++++..+.
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~ 166 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLY 166 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHH
Confidence 1 122222335789999999999864321 112222111111 112356778888887776665544
No 87
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.41 E-value=1.1e-12 Score=121.63 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=63.9
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
.++.||||||+...... + . -..+...|+. .++++|++++.... .....+..++...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~--~--~---~~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPY--S--E---DEKVARDFLLGEKPDLIVNVVDATNL----ERNLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCC--C--h---hHHHHHHHhcCCCCcEEEEEeeCCcc----hhHHHHHHHHHHcCCCEEEEEehh
Confidence 57899999998653321 1 1 1234555664 89988887664432 112233444444578999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
|+.+....... .......++..++.++++++.++.+.+..
T Consensus 112 Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 112 DEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred hhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 99765321111 11112234567889999888777655443
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.41 E-value=1.4e-12 Score=122.02 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=93.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|||++++|||||++++++..+-|... .|..+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~---------------------------------------- 39 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYK---------------------------------------- 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEE----------------------------------------
Confidence 79999999999999999999887633211 111110000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l 197 (599)
..+.+ ......+.||||||. +.+..+...|++++|++|++++..+... ....++
T Consensus 40 ----------~~~~~-~~~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04124 40 ----------HNAKF-EGKTILVDFWDTAGQ-------------ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWY 95 (161)
T ss_pred ----------EEEEE-CCEEEEEEEEeCCCc-------------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00011 112346789999996 4566788899999999988876544321 112344
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
...+...+ +.|+++|+||+|+..... .+ ........+..++.+++.++.++++.+..+..
T Consensus 96 ~~i~~~~~-~~p~ivv~nK~Dl~~~~~--~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 96 EELREYRP-EIPCIVVANKIDLDPSVT--QK-KFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred HHHHHhCC-CCcEEEEEECccCchhHH--HH-HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 44444332 579999999999853211 11 11111123456888999988888776654443
No 89
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.40 E-value=3e-12 Score=125.59 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=98.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++++|||||++++++..+.+... .|... .
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~--~ti~~-d----------------------------------------- 38 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD--PTVGV-D----------------------------------------- 38 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--ceece-E-----------------------------------------
Confidence 489999999999999999999987622211 11000 0
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
+... .+.+.......+.||||||. +....+...|++++++++++++..+... ....+
T Consensus 39 ------~~~~--~i~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~ 97 (211)
T cd04111 39 ------FFSR--LIEIEPGVRIKLQLWDTAGQ-------------ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDW 97 (211)
T ss_pred ------EEEE--EEEECCCCEEEEEEEeCCcc-------------hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHH
Confidence 0000 01111111246889999996 4456677889999999988877554321 11233
Q ss_pred HHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 197 MKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 197 l~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
+..+.. ..+...+.++|.||.|+.+......+........++.+|+.+++.++.++++.+..+.....
T Consensus 98 ~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 98 LEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred HHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333332 33445678899999999764332122122222334578999999999998888776665433
No 90
>COG2262 HflX GTPases [General function prediction only]
Probab=99.40 E-value=3.6e-12 Score=131.47 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCc
Q 007538 9 GLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQ 88 (599)
Q Consensus 9 ~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~ 88 (599)
.-+++|+.-+..+..... ..+-.......|.|++||..|||||||+|+|+|...+-.+.-+.|--|+.-+
T Consensus 164 ~rI~~i~~eLe~v~~~R~-~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~--------- 233 (411)
T COG2262 164 RRIAKLKRELENVEKARE-PRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR--------- 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE---------
Confidence 345556655555554321 0011122358999999999999999999999999875555556665552211
Q ss_pred cceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHH
Q 007538 89 EYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIES 168 (599)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~ 168 (599)
+.-+++..+.|-||-|+++. =|.++.+.++.
T Consensus 234 ---------------------------------------------~~l~~g~~vlLtDTVGFI~~----LP~~LV~AFks 264 (411)
T COG2262 234 ---------------------------------------------IELGDGRKVLLTDTVGFIRD----LPHPLVEAFKS 264 (411)
T ss_pred ---------------------------------------------EEeCCCceEEEecCccCccc----CChHHHHHHHH
Confidence 33344677899999999883 35567777655
Q ss_pred HHHHhhcCCCeEEEEEecCCccccc--HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEc
Q 007538 169 MVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVN 246 (599)
Q Consensus 169 ~~~~yi~~~~~iIL~v~~a~~d~~~--~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~ 246 (599)
. .+-...+|.++.||+.++.++.. ........++.-...|+|.|+||+|++.... ....+.... . ..+.+++
T Consensus 265 T-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~~~---~-~~v~iSA 338 (411)
T COG2262 265 T-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELERGS---P-NPVFISA 338 (411)
T ss_pred H-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-hhhhhhhcC---C-CeEEEEe
Confidence 4 44567899888877766554322 2345667788777799999999999987653 111111111 1 4678899
Q ss_pred CChhhhccCCCHHHHH
Q 007538 247 RSQADINRNIDMIVAR 262 (599)
Q Consensus 247 ~s~~~i~~~~~~~~~~ 262 (599)
.++.+++.+...+...
T Consensus 339 ~~~~gl~~L~~~i~~~ 354 (411)
T COG2262 339 KTGEGLDLLRERIIEL 354 (411)
T ss_pred ccCcCHHHHHHHHHHH
Confidence 8888876666555443
No 91
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.40 E-value=1.1e-12 Score=122.67 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=90.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|++|+|||||++++.+..+.+.-. +|-..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~--~t~~~-------------------------------------------- 36 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYD--PTIED-------------------------------------------- 36 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC--Cchhh--------------------------------------------
Confidence 79999999999999999999887632211 11000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~l 197 (599)
+.. ..+.+.+ ....+.||||||. +.+..+...|+++++++|++++..+.. + ....+.
T Consensus 37 -----~~~--~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~ 95 (163)
T cd04176 37 -----FYR--KEIEVDS-SPSVLEILDTAGT-------------EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMR 95 (163)
T ss_pred -----eEE--EEEEECC-EEEEEEEEECCCc-------------ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 000 0111111 1235789999996 233456777899999998877655432 1 112233
Q ss_pred HHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 198 KLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 198 ~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
...... ...+.|+++|+||+|+..................+.+|+.++++++.++++.+..
T Consensus 96 ~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 96 DQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAE 157 (163)
T ss_pred HHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence 223332 3357899999999998653321111111111223467888999988887765543
No 92
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.40 E-value=1.1e-12 Score=123.24 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=91.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+++|++|+|||||++++++..| +... .+|-....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~-~~t~~~~~----------------------------------------- 38 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESY-IPTIEDTY----------------------------------------- 38 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCc-CCcchheE-----------------------------------------
Confidence 3799999999999999999999876 2111 11100000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
...+.. ......+.+|||||..+ ...+...|++.++++|++++..+... ....+
T Consensus 39 ----------~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 94 (165)
T cd04140 39 ----------RQVISC-SKNICTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSVTSKQSLEELKPI 94 (165)
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCCCc-------------chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHH
Confidence 000011 11235688999999833 34456678889999888766544321 11233
Q ss_pred HHHHHHhC---CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~d---~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
....++.. ..+.|+++|.||+|+..................+.+|+.+++.++.++++.+..+
T Consensus 95 ~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 95 YELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred HHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 33444432 2467999999999997532211111111122345678999999998887665543
No 93
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=1e-12 Score=121.57 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=66.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...+.+|||||+..... .....+...+..+++.+|.++++++... .. ......+.+.+...+.++++|+||+|
T Consensus 44 ~~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~-~~~~~~~~~~~~~~~~piiiv~nK~D 116 (157)
T cd01894 44 GREFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVDGRE-GL-TPADEEIAKYLRKSKKPVILVVNKVD 116 (157)
T ss_pred CeEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEeccc-cC-CccHHHHHHHHHhcCCCEEEEEECcc
Confidence 35689999999965321 2334455666778889998877765543 22 11222344444445689999999999
Q ss_pred CCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCH
Q 007538 219 LMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 219 l~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~ 258 (599)
+.+.... ...+ ..++. .++.+++..+.++++.+..
T Consensus 117 ~~~~~~~-~~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (157)
T cd01894 117 NIKEEDE-AAEF----YSLGFGEPIPISAEHGRGIGDLLDA 152 (157)
T ss_pred cCChHHH-HHHH----HhcCCCCeEEEecccCCCHHHHHHH
Confidence 9865432 1111 12233 4677888877776654443
No 94
>PLN03110 Rab GTPase; Provisional
Probab=99.40 E-value=2.9e-12 Score=126.17 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=100.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|||++++|||||+++|++..+ +.... .|- . +.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~-~t~-g--~~------------------------------------- 48 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF-CLESK-STI-G--VE------------------------------------- 48 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-Cce-e--EE-------------------------------------
Confidence 345899999999999999999999875 21111 110 0 00
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+.. ..+.+. .....+.||||||. +.+..+...|++.++++|++++..+... ...
T Consensus 49 --------~~~--~~v~~~-~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 104 (216)
T PLN03110 49 --------FAT--RTLQVE-GKTVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQ 104 (216)
T ss_pred --------EEE--EEEEEC-CEEEEEEEEECCCc-------------HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHH
Confidence 000 011111 12346889999996 4567788889999999888776543221 123
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.|+..++...+.+.++++|.||+|+........+.........+.+|+.+++.++.++++.+..+....
T Consensus 105 ~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 105 RWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred HHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455666666666789999999999864332111112211223456789999998888777666554433
No 95
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.39 E-value=3.6e-12 Score=123.76 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=99.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|||++|+|||||++++.+..|.+ .. .+|..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~------------------------------------------ 40 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIG------------------------------------------ 40 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-Ccccc------------------------------------------
Confidence 45799999999999999999999887511 11 11100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+.-....+.+. .....+.||||||. +....+...|+++++++|+|++..+... ...
T Consensus 41 --------~~~~~~~~~~~-~~~~~l~l~D~~G~-------------~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~ 98 (199)
T cd04110 41 --------VDFKIRTVEIN-GERVKLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVK 98 (199)
T ss_pred --------ceeEEEEEEEC-CEEEEEEEEeCCCc-------------hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHH
Confidence 00000111111 12245789999996 3456778889999999988877655321 012
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
.++...+... ...+.++|+||+|+.+................+..|+.+++.++.++.+++..+.....
T Consensus 99 ~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 99 RWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 2333333322 35788999999999764332112122112234567999999999998888776655443
No 96
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.39 E-value=3.7e-12 Score=118.61 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=87.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|.+++|||||++++++..+. . ..|+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~------~~~t~------------------------------------------ 31 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-T------TIPTV------------------------------------------ 31 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-c------ccCcc------------------------------------------
Confidence 5899999999999999999998751 1 11200
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 199 (599)
++.... +..+....+.+|||||. ..+..+...|++.++++|++++..+.. ........
T Consensus 32 ----~~~~~~----~~~~~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~~~iv~v~D~~~~~-~~~~~~~~ 89 (160)
T cd04156 32 ----GFNVEM----LQLEKHLSLTVWDVGGQ-------------EKMRTVWKCYLENTDGLVYVVDSSDEA-RLDESQKE 89 (160)
T ss_pred ----CcceEE----EEeCCceEEEEEECCCC-------------HhHHHHHHHHhccCCEEEEEEECCcHH-HHHHHHHH
Confidence 000000 11123457899999997 344566778899999998877654432 11222222
Q ss_pred HHH----hCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccc--cCCCeEEEEcCChhhhccCCC
Q 007538 200 ARE----VDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYR--LQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 200 a~~----~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~--l~~g~~~v~~~s~~~i~~~~~ 257 (599)
..+ ....+.|+++|+||+|+.+... +....+...... ....++.+++.++.++++.+.
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 90 LKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred HHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHH
Confidence 221 1124689999999999964321 111111111111 122467788888888776544
No 97
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.39 E-value=4e-12 Score=116.79 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..+++||||||+...... .......+..+++.+|.+++++....... .... .+.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~------~~~~~~~~~~~~~~~d~il~v~~~~~~~~-~~~~-~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGL------GREREELARRVLERADLILFVVDADLRAD-EEEE-KLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccc------hhhHHHHHHHHHHhCCEEEEEEeCCCCCC-HHHH-HHHHHHHhcCCeEEEEEEccc
Confidence 578999999999764432 12223566778899999877766554332 2222 234444445789999999999
Q ss_pred CCCCCCcHHHH---HhCcccccCCCeEEEEcCChhhhccCC
Q 007538 219 LMDKGTNALDV---LEGRSYRLQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 219 l~~~~~~~~~~---~~~~~~~l~~g~~~v~~~s~~~i~~~~ 256 (599)
+.......... ...........++.+++.++.++.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 116 LLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred cCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 98754322111 111223334567888887776655443
No 98
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.1e-12 Score=121.88 Aligned_cols=166 Identities=14% Similarity=0.193 Sum_probs=114.0
Q ss_pred cccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHH
Q 007538 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (599)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (599)
.+..+.+|+|+|+.|+|||.|+-++.+..| |-...
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~-------------------------------------------- 39 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTF-TESYI-------------------------------------------- 39 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCc-chhhc--------------------------------------------
Confidence 346789999999999999999999999876 22111
Q ss_pred HHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-
Q 007538 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I- 191 (599)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~- 191 (599)
.+-|+.-....+++.+.. ..|.+|||.|. ++++.++.+|.+++|.||+|.+-.... +
T Consensus 40 -------sTIGVDf~~rt~e~~gk~-iKlQIWDTAGQ-------------ERFrtit~syYR~ahGii~vyDiT~~~SF~ 98 (205)
T KOG0084|consen 40 -------STIGVDFKIRTVELDGKT-IKLQIWDTAGQ-------------ERFRTITSSYYRGAHGIIFVYDITKQESFN 98 (205)
T ss_pred -------ceeeeEEEEEEeeecceE-EEEEeeecccc-------------HHHhhhhHhhccCCCeEEEEEEcccHHHhh
Confidence 111122223333444443 47999999998 788999999999999999987654321 1
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCC-eEEEEcCChhhhccCCCHHHHHHHH
Q 007538 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 192 ~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
....|+.-.+..-..+.+.++|.||+|+.+...-..+..+.....++.+ |+.+++.++.++++.+..+.....+
T Consensus 99 ~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 99 NVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred hHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 1245665566666667899999999999876532222222334456666 9999999988887766655554443
No 99
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.39 E-value=2.2e-12 Score=122.63 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...+.||||||.. .+..++..|++.+|++|+|++..+ .. ....+.........+.++++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~D~~~-~~-~~~~~~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 66 EYLLNLIDTPGHV-------------DFSYEVSRSLAACEGALLLVDATQ-GV-EAQTLANFYLALENNLEIIPVINKID 130 (179)
T ss_pred cEEEEEEECCCCh-------------hhHHHHHHHHHhcCeEEEEEECCC-Cc-cHhhHHHHHHHHHcCCCEEEEEECCC
Confidence 4568899999983 345677788999999988776543 22 11222222223335688999999999
Q ss_pred CCCCCCc-HHHHHhCcccccCC---CeEEEEcCChhhhccCCCHH
Q 007538 219 LMDKGTN-ALDVLEGRSYRLQH---PWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 219 l~~~~~~-~~~~~~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~ 259 (599)
+.+.... ..+.+. ..++. .++.+++.++.++++++..+
T Consensus 131 l~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (179)
T cd01890 131 LPSADPERVKQQIE---DVLGLDPSEAILVSAKTGLGVEDLLEAI 172 (179)
T ss_pred CCcCCHHHHHHHHH---HHhCCCcccEEEeeccCCCCHHHHHHHH
Confidence 8653211 111111 11222 37888998888876655433
No 100
>PTZ00369 Ras-like protein; Provisional
Probab=99.39 E-value=2.1e-12 Score=124.31 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=92.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
-++|+|+|++|+|||||++++.+..| +....+ |-.. .
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~-~~~~~~-t~~~---~-------------------------------------- 41 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF-IDEYDP-TIED---S-------------------------------------- 41 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CcCcCC-chhh---E--------------------------------------
Confidence 46899999999999999999998765 211110 1000 0
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
+ ...+.+. .....+.||||||.. ....+...|++.++++|++++..+.+. ....
T Consensus 42 -------~---~~~~~~~-~~~~~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~ 97 (189)
T PTZ00369 42 -------Y---RKQCVID-EETCLLDILDTAGQE-------------EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIAS 97 (189)
T ss_pred -------E---EEEEEEC-CEEEEEEEEeCCCCc-------------cchhhHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 0 0001111 112457899999973 345567789999999988877655431 1122
Q ss_pred HHHHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+....... ...+.|+++|.||+|+.+................+..|+.+++.++.++.+.+..+.
T Consensus 98 ~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 98 FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 33323332 234679999999999864321111111111123345788999988888877665544
No 101
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.2e-11 Score=127.44 Aligned_cols=162 Identities=23% Similarity=0.277 Sum_probs=99.7
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..-++||++|.||+|||||||+|+..+. .+++..|
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~---------------------------------------- 300 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP---------------------------------------- 300 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC----------------------------------------
Confidence 4668999999999999999999999987 6666555
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
| -+.|.|...+. +++..+.|+||.|+-+...+ .++..--+-.++-+..+|.|+++|++...++ +.
T Consensus 301 ----G----TTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~rA~k~~~~advi~~vvda~~~~t--~s 365 (531)
T KOG1191|consen 301 ----G----TTRDAIEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIERARKRIERADVILLVVDAEESDT--ES 365 (531)
T ss_pred ----C----cchhhheeEee-cCCeEEEEEeccccccccCC----hhHHHhHHHHHHHHhhcCEEEEEeccccccc--cc
Confidence 2 22344444443 67888999999999772111 1222223557778899998877665533333 22
Q ss_pred HHHHHHHhCC------------CCCceEEEeccCCCCCCCCcHHH----HHhCcccccCCCeEE-EEcCChhhhccCCCH
Q 007538 196 AMKLAREVDP------------TGERTFGVLTKLDLMDKGTNALD----VLEGRSYRLQHPWVG-IVNRSQADINRNIDM 258 (599)
Q Consensus 196 ~l~la~~~d~------------~g~rti~VltK~Dl~~~~~~~~~----~~~~~~~~l~~g~~~-v~~~s~~~i~~~~~~ 258 (599)
.+.+++.+.. ...|.|.|.||.|+......... +... .-.-....+. |++.+.+++..+.+.
T Consensus 366 d~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~a 444 (531)
T KOG1191|consen 366 DLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTA 444 (531)
T ss_pred chHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccceEEEeeechhhhHHHHHHH
Confidence 2222222211 23789999999999876432111 1111 1111223344 777777777655443
No 102
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.38 E-value=3.8e-12 Score=119.18 Aligned_cols=154 Identities=12% Similarity=0.165 Sum_probs=94.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++++|||||++.+++..|.|... .|..+ .
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~---~---------------------------------------- 36 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGV---D---------------------------------------- 36 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--Cceee---E----------------------------------------
Confidence 69999999999999999999987733211 11111 0
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l 197 (599)
+. ...+.+.+ ....+.+|||||. +....+...|++.+++++++++..+... ....++
T Consensus 37 -----~~--~~~~~~~~-~~~~l~i~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~ 95 (161)
T cd04117 37 -----FK--MKTIEVDG-IKVRIQIWDTAGQ-------------ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWV 95 (161)
T ss_pred -----EE--EEEEEECC-EEEEEEEEeCCCc-------------HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHH
Confidence 00 00111111 1246789999996 3456677889999999988876554321 112333
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
...+...+.+.+.++|.||.|+........+........++.+|+.+++.++.++++.+..+
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 33334445568999999999997544211111111122345679999999888877655443
No 103
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.38 E-value=1.4e-12 Score=123.28 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=61.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-----cccHH---HHHHHHHhCC-----
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-----IATSD---AMKLAREVDP----- 205 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-----~~~~~---~l~la~~~d~----- 205 (599)
...+.||||||+....... +.+......+++.+++++++++..+.+ ....+ +.........
T Consensus 43 ~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEG------RGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcC------CCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678999999985432211 111112345677899888877655432 11111 1112222221
Q ss_pred --CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCC
Q 007538 206 --TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 206 --~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~ 256 (599)
.+.|+++|+||+|+.....................++.+++..+.++++.+
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~ 169 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELI 169 (176)
T ss_pred HHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHH
Confidence 368999999999998654322110111112234567888888777665443
No 104
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.37 E-value=3.2e-12 Score=119.52 Aligned_cols=105 Identities=13% Similarity=0.220 Sum_probs=62.6
Q ss_pred EEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 144 LIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 144 lvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
+|||||...... +..+.+ ..+++.+|+++++++..+.+.....+ +. .+. .+.++++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~~--------~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~~~--~~-~~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHP--------RWYHAL-ITTLQDVDMLIYVHGANDPESRLPAG--LL-DIG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCH--------HHHHHH-HHHHhcCCEEEEEEeCCCcccccCHH--HH-hcc-CCCCeEEEEEccccCccc
Confidence 699999854221 222333 34578999998877654433211222 22 222 357899999999986432
Q ss_pred Cc-HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 224 TN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 224 ~~-~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.+ ..+.+. ......+++.+++++++++++++..+....
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 11 122221 112225899999999999988777665543
No 105
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.37 E-value=3.6e-12 Score=118.21 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=91.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|+++||||||++++++..+ +.....++..+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~------------------------------------------ 37 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYR------------------------------------------ 37 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEE------------------------------------------
Confidence 589999999999999999998764 3333222221100
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l 197 (599)
....+ ......+.+||+||. .....+...+++..++++++++..+.+.. ...+.
T Consensus 38 ----------~~~~~-~~~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 93 (160)
T cd00876 38 ----------KTIVV-DGETYTLDILDTAGQ-------------EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYR 93 (160)
T ss_pred ----------EEEEE-CCEEEEEEEEECCCh-------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00011 111346789999997 33456677788999999888765543211 11222
Q ss_pred HHHHHhCC-CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 198 KLAREVDP-TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 198 ~la~~~d~-~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
.......+ .+.++++|+||+|+........+.........+.+|+.++++.+.++.+.+..
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Confidence 22233333 57899999999999863322112222122233467899999888777655443
No 106
>PLN03108 Rab family protein; Provisional
Probab=99.37 E-value=6.2e-12 Score=123.24 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=96.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++++|||||+++|++..|-|......+ . .
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--~---~------------------------------------- 42 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--V---E------------------------------------- 42 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--c---e-------------------------------------
Confidence 356899999999999999999999876332211000 0 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--~ 194 (599)
+. .-.+.+.+. ...+.+|||||. +.+..+...|++.+++++++++..+...-. .
T Consensus 43 --------~~--~~~i~~~~~-~i~l~l~Dt~G~-------------~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~ 98 (210)
T PLN03108 43 --------FG--ARMITIDNK-PIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLA 98 (210)
T ss_pred --------EE--EEEEEECCE-EEEEEEEeCCCc-------------HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHH
Confidence 00 001111111 135789999996 345667788999999998887665532111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.++...........++++|.||+|+........+.........+..|+.++++++.++++.+..+.
T Consensus 99 ~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 99 SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 333333444445689999999999975432111111111123446789999999888877664443
No 107
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.37 E-value=6.9e-12 Score=118.17 Aligned_cols=154 Identities=15% Similarity=0.202 Sum_probs=90.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++++|||||++++++..+.+......+. .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~-----~------------------------------------- 41 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV-----E------------------------------------- 41 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceee-----E-------------------------------------
Confidence 3458999999999999999999988763321111000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~ 194 (599)
+. ...+.+ ......+.||||||. +....+...|++.++++|++++..+.+ +. ..
T Consensus 42 --------~~--~~~~~~-~~~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (170)
T cd04116 42 --------FL--NKDLEV-DGHFVTLQIWDTAGQ-------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLS 97 (170)
T ss_pred --------EE--EEEEEE-CCeEEEEEEEeCCCh-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHH
Confidence 00 000111 112346789999996 456778888999999988776544332 11 12
Q ss_pred HHHHHHHH-h---CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccC-CCeEEEEcCChhhhccCCC
Q 007538 195 DAMKLARE-V---DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNID 257 (599)
Q Consensus 195 ~~l~la~~-~---d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~~ 257 (599)
.+...... . .+.+.|+++|+||.|+........+ +......++ ..|+.+++.++.++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 164 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEE-AQAWCRENGDYPYFETSAKDATNVAAAFE 164 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECccccccccCHHH-HHHHHHHCCCCeEEEEECCCCCCHHHHHH
Confidence 22222222 1 1346799999999999743221111 111111222 4688999988877765544
No 108
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.37 E-value=3.4e-12 Score=123.07 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.||||||.. ....+...|++++++++++++..+... . ...++..++...+ +.++++|+||+
T Consensus 50 ~~l~i~D~~G~~-------------~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~ 115 (193)
T cd04118 50 VTLGIWDTAGSE-------------RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKS 115 (193)
T ss_pred EEEEEEECCCch-------------hhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcc
Confidence 357899999972 335566778899999988776543211 0 1133444444332 68999999999
Q ss_pred CCCCCCCcH----HHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 218 DLMDKGTNA----LDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 218 Dl~~~~~~~----~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
|+.+..... ...+.......+..|+.+++.++.++++++..+....
T Consensus 116 Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 116 DLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred cccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 987532110 0111111122345688999999988887776665543
No 109
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=6.2e-12 Score=137.00 Aligned_cols=164 Identities=22% Similarity=0.251 Sum_probs=98.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+-+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~---------------------------------------- 211 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDS---------------------------------------- 211 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEE----------------------------------------
Confidence 467999999999999999999999864322221 112111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
+...+. .+...+.||||||+.+..... +........-+..+++.+|++|++++ +.... +..
T Consensus 212 --------------~~~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilViD-~~~~~-~~~ 272 (435)
T PRK00093 212 --------------IDTPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLLVID-ATEGI-TEQ 272 (435)
T ss_pred --------------EEEEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEEEEe-CCCCC-CHH
Confidence 111111 234568999999996533211 11111112234568899998877665 44444 344
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccc-cCCCeEEEEcCChhhhccCCCHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYR-LQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
..++++.+...+.++++|+||+|+.+... ...+.+...... ...+++.+++.++.++.+.++.+
T Consensus 273 ~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i 339 (435)
T PRK00093 273 DLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAI 339 (435)
T ss_pred HHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHH
Confidence 45667777667899999999999984321 111212111111 23467788888877776554433
No 110
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.37 E-value=3.8e-12 Score=118.57 Aligned_cols=105 Identities=15% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc--cHHHHHHHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA--TSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~--~~~~l~la~~~d~~g~rti~VltK 216 (599)
..+.||||||. ..+..+...|++.++++|++++..+.. +. ......+.+.....+.|+++|+||
T Consensus 43 ~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 43 LKFQVWDLGGQ-------------TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEEECCCC-------------HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 56889999998 344667788999999998877654421 10 111222223222346899999999
Q ss_pred CCCCCCCCcHHHHHh--Ccc--cccCCCeEEEEcCChhhhccCCCH
Q 007538 217 LDLMDKGTNALDVLE--GRS--YRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~--~~~--~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
+|+.+... ..++.. +.. ......++.+++.++.++++.+..
T Consensus 110 ~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 110 QDMPGALS-EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CCCCCCCC-HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 99975431 112211 111 111234888899888887765543
No 111
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.36 E-value=4.1e-12 Score=119.99 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=86.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|||++|+|||||++++++..+ |.... +|-. ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~-~t~~---~~~-------------------------------------- 39 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTE-ATIG---VDF-------------------------------------- 39 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccc-ccee---EEE--------------------------------------
Confidence 4899999999999999999998765 32211 1100 000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHH-HHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIE-SMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~-~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
. ...+.+. .....+.+|||||. +.+. .+...|++++|++|++++..+... ....
T Consensus 40 -------~--~~~~~~~-~~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (170)
T cd04115 40 -------R--ERTVEID-GERIKVQLWDTAGQ-------------ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPS 96 (170)
T ss_pred -------E--EEEEEEC-CeEEEEEEEeCCCh-------------HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHH
Confidence 0 0001111 12346889999996 2222 467788999999988877654321 1123
Q ss_pred HHHHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCC
Q 007538 196 AMKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRS 248 (599)
Q Consensus 196 ~l~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s 248 (599)
++..+... .....|+++|+||.|+........+...........+|+.+++.+
T Consensus 97 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 97 WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 33333332 234689999999999875433211111111223457899999987
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.36 E-value=6.3e-12 Score=119.04 Aligned_cols=150 Identities=16% Similarity=0.240 Sum_probs=90.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-++|+++|.++||||||+++|++..+ +. ..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCc----------------------------------------
Confidence 456899999999999999999998743 11 0110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~ 194 (599)
.++....+. + +...+.+|||||. +.+..+...|++.++++++|++..+.. +.. .
T Consensus 46 ------~g~~~~~~~--~---~~~~l~l~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (173)
T cd04154 46 ------LGFQIKTLE--Y---EGYKLNIWDVGGQ-------------KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCK 101 (173)
T ss_pred ------cccceEEEE--E---CCEEEEEEECCCC-------------HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence 001111111 1 1356899999997 345667788999999998887655432 111 1
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcc-cccCCCeEEEEcCChhhhccCCC
Q 007538 195 DAM-KLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRS-YRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 195 ~~l-~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~-~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
.++ .+.+.....+.++++|+||+|+..... +..+.+.... ......|+.+++.++.++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 111 111211224689999999999975432 1222222111 12334688899988888766543
No 113
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.36 E-value=6.7e-12 Score=144.21 Aligned_cols=162 Identities=19% Similarity=0.254 Sum_probs=104.7
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..+|.|++||.+|+|||||+|+|+|..+ .++...|
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~p---------------------------------------- 307 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTP---------------------------------------- 307 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCC----------------------------------------
Confidence 3568999999999999999999999764 2222122
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
++..+.+.... ..+...+.||||||+... .+.+...+.+.+..|++.+|++|+|++. ...+ +..
T Consensus 308 --------GvT~d~~~~~~-~~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~iL~VvDa-~~~~-~~~ 371 (712)
T PRK09518 308 --------GVTRDRVSYDA-EWAGTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADAVVFVVDG-QVGL-TST 371 (712)
T ss_pred --------CeeEEEEEEEE-EECCEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCEEEEEEEC-CCCC-CHH
Confidence 01111111111 122456899999998642 2236667788888999999998777654 4433 222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
...+++.+...+.++|+|+||+|+........+. +.+++ ..+.+++.++.++.++++.+....
T Consensus 372 d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 372 DERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEF-----WKLGLGEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred HHHHHHHHHhcCCCEEEEEECcccccchhhHHHH-----HHcCCCCeEEEECCCCCCchHHHHHHHHhc
Confidence 3345666666789999999999987543222222 12222 246799999999887776655443
No 114
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.6e-12 Score=119.53 Aligned_cols=164 Identities=13% Similarity=0.162 Sum_probs=115.7
Q ss_pred ccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
|..+.+|++||++++|||+++-.+....|-+ ...+-.-+.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~---~~~sTiGID------------------------------------- 48 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT---SFISTIGID------------------------------------- 48 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcC---CccceEEEE-------------------------------------
Confidence 4578899999999999999999999887611 011101111
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cc
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IA 192 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~ 192 (599)
|- .-.+++.+ ....|.+|||.|. +..+.++.+|++.+..|+|+++..+.- ..
T Consensus 49 ----------Fk--~kti~l~g-~~i~lQiWDtaGQ-------------erf~ti~~sYyrgA~gi~LvyDitne~Sfen 102 (207)
T KOG0078|consen 49 ----------FK--IKTIELDG-KKIKLQIWDTAGQ-------------ERFRTITTAYYRGAMGILLVYDITNEKSFEN 102 (207)
T ss_pred ----------EE--EEEEEeCC-eEEEEEEEEcccc-------------hhHHHHHHHHHhhcCeeEEEEEccchHHHHH
Confidence 11 11111222 2356899999998 778999999999999999998776632 12
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
...|++.+++..+.+.+.++|.||+|+.+......+--+.....++..|+.+++.++.++.+.+..+.+...
T Consensus 103 i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 103 IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence 245888888888889999999999999885543233233334556788999999999988877765555433
No 115
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.36 E-value=7.9e-12 Score=120.32 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=101.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.+-+|+|+|+.++|||||+.++.+..| +.... .| ....
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~-~t-~~~~--------------------------------------- 42 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYG-YN-MGID--------------------------------------- 42 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-Cc-ceeE---------------------------------------
Confidence 356899999999999999999998765 11110 11 0000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+. ...+.+. .....|.||||||. +....+...|++.++++|||++..+..- ...
T Consensus 43 --------~~--~~~i~~~-~~~~~l~iwDt~G~-------------~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~ 98 (189)
T cd04121 43 --------YK--TTTILLD-GRRVKLQLWDTSGQ-------------GRFCTIFRSYSRGAQGIILVYDITNRWSFDGID 98 (189)
T ss_pred --------EE--EEEEEEC-CEEEEEEEEeCCCc-------------HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 00 0111111 12356889999997 4566788899999999988877554321 113
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.|+..+....+ +.++|+|.||.|+........+..+......+..|+.+++.++.++++.+..+....
T Consensus 99 ~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 99 RWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 34444544444 689999999999965322111112222223456799999999999988877665443
No 116
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.36 E-value=8.4e-12 Score=116.32 Aligned_cols=151 Identities=16% Similarity=0.230 Sum_probs=90.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|.+|||||||+|+|++..+.+......+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~----------------------------------------------- 34 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIG----------------------------------------------- 34 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCccc-----------------------------------------------
Confidence 699999999999999999999875222111110
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~~l 197 (599)
.......+.+ ......+.||||||. +....+...+++.+|+++++++..+..- . ...++
T Consensus 35 -----~~~~~~~~~~-~~~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01863 35 -----VDFKVKTLTV-DGKKVKLAIWDTAGQ-------------ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWL 95 (161)
T ss_pred -----ceEEEEEEEE-CCEEEEEEEEECCCc-------------hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHH
Confidence 0000011111 122346889999996 3345566778899999988776543221 0 11223
Q ss_pred HHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 198 KLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 198 ~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
..... ....+.+.++|+||+|+........+... .....+..|+.+++..+.++++.+.
T Consensus 96 ~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 96 NELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FARKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred HHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HHHHcCCEEEEEecCCCCCHHHHHH
Confidence 33333 24557889999999999844333222111 1223456789999988877765443
No 117
>PLN03118 Rab family protein; Provisional
Probab=99.36 E-value=5.9e-12 Score=123.42 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=96.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
-.+|+|||++++|||||+++|++..+ +. ....+...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~-~~~t~~~~------------------------------------------ 49 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-ED-LAPTIGVD------------------------------------------ 49 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCceeE------------------------------------------
Confidence 45899999999999999999998764 11 11100000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--H
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~ 194 (599)
.....+.+ +.....+.||||||. +.+..+...|++.++++|++++..+.+ +.. .
T Consensus 50 ---------~~~~~~~~-~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~ 106 (211)
T PLN03118 50 ---------FKIKQLTV-GGKRLKLTIWDTAGQ-------------ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSD 106 (211)
T ss_pred ---------EEEEEEEE-CCEEEEEEEEECCCc-------------hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 00011111 111246789999997 344666788999999998887665432 111 1
Q ss_pred HHHHHHHHhC-CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 195 DAMKLAREVD-PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 195 ~~l~la~~~d-~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.+........ ..+.+.++|.||+|+........+.........+..|+.+++.++.++++.+..+.....+
T Consensus 107 ~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 107 VWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 1222333333 2356889999999997543211111111112234568999999998888877766654433
No 118
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.36 E-value=4.2e-12 Score=121.32 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=62.6
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...++||||||.. .+......+++.+|+++++++... .. ......+.......+.++++|+||+|
T Consensus 61 ~~~~~liDtpG~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~-~~~~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHE-------------DFSSEVIRGLSVSDGAILVVDANE-GV-QPQTREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcH-------------HHHHHHHHHHHhcCEEEEEEECCC-CC-cHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4679999999973 334567778889999988765443 22 12222233333335789999999999
Q ss_pred CCCCCCc------HHHHHhCcc----------cccCCCeEEEEcCChhhhccCCC
Q 007538 219 LMDKGTN------ALDVLEGRS----------YRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 219 l~~~~~~------~~~~~~~~~----------~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
+..+... ..+.+.... ......++.+++..+.++++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~ 180 (189)
T cd00881 126 RVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLE 180 (189)
T ss_pred CcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHH
Confidence 9863321 112222111 12345667777777766655443
No 119
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.35 E-value=6.1e-12 Score=118.32 Aligned_cols=149 Identities=19% Similarity=0.261 Sum_probs=87.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|+.|||||||++++.+..| |.... .| .+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~-~~-~~-------------------------------------------- 34 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVP-RV-LP-------------------------------------------- 34 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCC-Cc-cc--------------------------------------------
Confidence 699999999999999999998875 32211 01 01
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc--HHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT--SDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~--~~~ 196 (599)
.+ .+...+. .....+.+|||||... .......+++.+++++++++..+.+. .. ..|
T Consensus 35 ----~~---~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 93 (166)
T cd01893 35 ----EI---TIPADVT-PERVPTTIVDTSSRPQ-------------DRANLAAEIRKANVICLVYSVDRPSTLERIRTKW 93 (166)
T ss_pred ----ce---Eeeeeec-CCeEEEEEEeCCCchh-------------hhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111111 1234688999999732 23445667899999888775443221 11 124
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCc--ccccCCCeEEEEcCChhhhccCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGR--SYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~--~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
...++...+ +.++++|+||+|+.+.... ..+.+... ......+|+.+++.++.++++.+.
T Consensus 94 ~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 94 LPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred HHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 455555444 7899999999999765431 11111100 011012677888887777665544
No 120
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.35 E-value=5.2e-12 Score=118.96 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=91.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|.+||||||+++++++..+.+. ....+...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~-------------------------------------------- 37 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIES-YDPTIEDS-------------------------------------------- 37 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchhe--------------------------------------------
Confidence 699999999999999999998876221 11111000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~l 197 (599)
+ ...+.+ ......+.+|||||.. .+..+...|++.+++++++++..+.. + ....+.
T Consensus 38 -----~---~~~~~~-~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~ 95 (168)
T cd04177 38 -----Y---RKQVEI-DGRQCDLEILDTAGTE-------------QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELR 95 (168)
T ss_pred -----E---EEEEEE-CCEEEEEEEEeCCCcc-------------cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 001111 1122467899999973 34567778889999988876654422 1 112233
Q ss_pred HHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccC-CCeEEEEcCChhhhccCCCHH
Q 007538 198 KLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~ 259 (599)
..... ....+.|+++|+||.|+.+......+.........+ .+|+.+++.++.++++.+..+
T Consensus 96 ~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 96 EQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred HHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 33332 234578999999999997544221111111112233 578999999988877655433
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.35 E-value=5.4e-12 Score=118.38 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=64.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHH----hCCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLARE----VDPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~----~d~~g~rti~Vl 214 (599)
...+.+|||||. ..+..+...+++.+++++++++..+.+. .......... ....+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~~~~v~vvd~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQ-------------ESLRSLWDKYYAECHAIIYVIDSTDRER-FEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCC-------------hhhHHHHHHHhCCCCEEEEEEECchHHH-HHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 467899999997 3345677788999999988776544321 1122222222 223478999999
Q ss_pred ccCCCCCCCC--cHHHHHhCcc---cccCCCeEEEEcCChhhhccCCC
Q 007538 215 TKLDLMDKGT--NALDVLEGRS---YRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 215 tK~Dl~~~~~--~~~~~~~~~~---~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
||+|+.+... ...+.+.... ......++.+++.++.++++.+.
T Consensus 115 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~ 162 (167)
T cd04160 115 NKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIE 162 (167)
T ss_pred EccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHH
Confidence 9999865432 1222222211 11234688889988887765443
No 122
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.35 E-value=3.8e-12 Score=120.16 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=90.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+++|.++||||||+++|++..+.. . .|+.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--~-----~~t~--------------------------------------- 41 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--T-----IPTV--------------------------------------- 41 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc--c-----cCCc---------------------------------------
Confidence 34689999999999999999998765511 1 1100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
++... . +.. ....+.||||||. +..+.+...|+++++++|+|++..+..- -..+
T Consensus 42 -------g~~~~--~--~~~-~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~a~~ii~v~D~t~~~s-~~~~ 95 (168)
T cd04149 42 -------GFNVE--T--VTY-KNVKFNVWDVGGQ-------------DKIRPLWRHYYTGTQGLIFVVDSADRDR-IDEA 95 (168)
T ss_pred -------ccceE--E--EEE-CCEEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEEeCCchhh-HHHH
Confidence 00000 0 111 2356899999998 3456677889999999988887655321 2222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCCCCCCCC--cHHHHHhC-cccccCCCeEEEEcCChhhhccCCCH
Q 007538 197 MKLAREV-D---PTGERTFGVLTKLDLMDKGT--NALDVLEG-RSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 197 l~la~~~-d---~~g~rti~VltK~Dl~~~~~--~~~~~~~~-~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
.....++ . ..+.++++|+||+|+.+... +..+.+.. ........++.+++.++.++++.+..
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 96 RQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred HHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 2222222 1 23579999999999975322 12222211 11112234678899998887765543
No 123
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.35 E-value=1.4e-11 Score=141.60 Aligned_cols=164 Identities=22% Similarity=0.234 Sum_probs=96.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCC-cccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~l-P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..|+|+++|.+|||||||+|+|+|.++. +.....+|+-+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~-------------------------------------- 490 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD-------------------------------------- 490 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--------------------------------------
Confidence 5689999999999999999999998752 2222222222210
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCcccccH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
..+.+ +..+++||||||+.+.... .+..+.+..+ ...+++.+|+++++++ ++... +.
T Consensus 491 --------------~~~~~---~~~~~~liDTaG~~~~~~~---~~~~e~~~~~r~~~~i~~advvilViD-at~~~-s~ 548 (712)
T PRK09518 491 --------------EIVEI---DGEDWLFIDTAGIKRRQHK---LTGAEYYSSLRTQAAIERSELALFLFD-ASQPI-SE 548 (712)
T ss_pred --------------eEEEE---CCCEEEEEECCCcccCccc---chhHHHHHHHHHHHHhhcCCEEEEEEE-CCCCC-CH
Confidence 01111 2456889999998653221 1111223222 4567899999887665 44444 33
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCccccc-CCCeEEEEcCChhhhccCCCHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRL-QHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
....++..+...+.++|+|+||+|+.+... ...+.+......+ ..+.+.+++.++.++++++..+.
T Consensus 549 ~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~ 617 (712)
T PRK09518 549 QDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQ 617 (712)
T ss_pred HHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344566666667899999999999986432 1111111111111 12446777777777665554443
No 124
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.35 E-value=7.9e-12 Score=121.22 Aligned_cols=120 Identities=26% Similarity=0.306 Sum_probs=69.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|.+|+|||||+|+|+|..+ |....+++... .+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~~~------~~----------------------------------- 39 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTGVV------ET----------------------------------- 39 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccCcc------cc-----------------------------------
Confidence 4799999999999999999999764 22111111100 00
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
+.... .+..+...++++|||||+...... ..+.++. ..+.+.|.++++ .+ .++ ++....
T Consensus 40 -------t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~---~~~~~~d~~l~v-~~--~~~-~~~d~~ 98 (197)
T cd04104 40 -------TMKRT--PYPHPKFPNVTLWDLPGIGSTAFP-----PDDYLEE---MKFSEYDFFIII-SS--TRF-SSNDVK 98 (197)
T ss_pred -------ccCce--eeecCCCCCceEEeCCCCCcccCC-----HHHHHHH---hCccCcCEEEEE-eC--CCC-CHHHHH
Confidence 00000 112233568999999999653211 1122221 124567876664 32 234 333344
Q ss_pred HHHHhCCCCCceEEEeccCCCCC
Q 007538 199 LAREVDPTGERTFGVLTKLDLMD 221 (599)
Q Consensus 199 la~~~d~~g~rti~VltK~Dl~~ 221 (599)
+++.+...+.++++|+||+|+..
T Consensus 99 ~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 99 LAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred HHHHHHHhCCCEEEEEecccchh
Confidence 55555556889999999999964
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.35 E-value=1.2e-11 Score=113.97 Aligned_cols=147 Identities=20% Similarity=0.244 Sum_probs=86.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
.|+++|.+|||||||+|+|+|.++ +.+. .+|...
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~~-------------------------------------------- 34 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF-SEDT-IPTVGF-------------------------------------------- 34 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC-CcCc-cCCCCc--------------------------------------------
Confidence 489999999999999999999876 2211 111000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH--
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM-- 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l-- 197 (599)
. ... +... ...+.+|||||. ..+..+...|++.+++++++++....+. .....
T Consensus 35 ------~--~~~--~~~~-~~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~ 89 (159)
T cd04159 35 ------N--MRK--VTKG-NVTLKVWDLGGQ-------------PRFRSMWERYCRGVNAIVYVVDAADRTA-LEAAKNE 89 (159)
T ss_pred ------c--eEE--EEEC-CEEEEEEECCCC-------------HhHHHHHHHHHhcCCEEEEEEECCCHHH-HHHHHHH
Confidence 0 001 1111 256899999997 3456678889999999888775443221 11111
Q ss_pred --HHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhC-cccccCCCeEEEEcCChhhhccCCC
Q 007538 198 --KLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEG-RSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 198 --~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~-~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
.+.......+.|.++|+||.|+.+.... ..+.+.. ........++.++++++.++++.+.
T Consensus 90 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 90 LHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred HHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 1111112246799999999998764321 1111111 1112234678888888877665443
No 126
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.34 E-value=7.8e-12 Score=114.21 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=55.8
Q ss_pred EEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 143 TLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 143 tlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
.+|||||.... ....+..+. .+++++|++|+|++..+...... ..+.... +.+.++|+||+|+.+.
T Consensus 38 ~~iDt~G~~~~--------~~~~~~~~~-~~~~~ad~vilv~d~~~~~s~~~--~~~~~~~---~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 38 GAIDTPGEYVE--------NRRLYSALI-VTAADADVIALVQSATDPESRFP--PGFASIF---VKPVIGLVTKIDLAEA 103 (142)
T ss_pred eeecCchhhhh--------hHHHHHHHH-HHhhcCCEEEEEecCCCCCcCCC--hhHHHhc---cCCeEEEEEeeccCCc
Confidence 58999997321 122344444 35899999988776544321111 1222222 3489999999999753
Q ss_pred CCcHHHHHhCcccccC-CCeEEEEcCChhhhccCC
Q 007538 223 GTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNI 256 (599)
Q Consensus 223 ~~~~~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~ 256 (599)
.... +.........+ .+++.+++.++.++++.+
T Consensus 104 ~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 104 DVDI-ERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred ccCH-HHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 2221 11111111122 368899999888876544
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.34 E-value=7.1e-12 Score=116.53 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=64.7
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HHH-HHHHHHhCCCCCceEEEec
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA-MKLAREVDPTGERTFGVLT 215 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~~~-l~la~~~d~~g~rti~Vlt 215 (599)
...+.+|||||. .....+...+++.+++++++++..+.+ +.. ..+ ..+.+.....+.++++|+|
T Consensus 42 ~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 42 NVSFTVWDVGGQ-------------DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred CEEEEEEECCCC-------------hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 457899999997 334556778899999998877665532 111 111 1222323345789999999
Q ss_pred cCCCCCCCCcHHHHHhCcc----cccCCCeEEEEcCChhhhccCCC
Q 007538 216 KLDLMDKGTNALDVLEGRS----YRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 216 K~Dl~~~~~~~~~~~~~~~----~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
|+|+..... ..++..... ......++.+++.++.++++.+.
T Consensus 109 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 109 KQDLPGALS-VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred ccCCccccC-HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999976432 222211111 12334688888888877765443
No 128
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.33 E-value=1e-11 Score=118.29 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=93.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|.+|+|||||++++++..+ +.....++..... .
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~-~---------------------------------------- 40 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFS-K---------------------------------------- 40 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEE-E----------------------------------------
Confidence 799999999999999999998765 3222111111000 0
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~--- 196 (599)
.+.+ ......+.||||||.. .+..+...+...+++++++++..+... -+..
T Consensus 41 -----------~~~~-~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~ 94 (180)
T cd04137 41 -----------IIRY-KGQDYHLEIVDTAGQD-------------EYSILPQKYSIGIHGYILVYSVTSRKS-FEVVKVI 94 (180)
T ss_pred -----------EEEE-CCEEEEEEEEECCChH-------------hhHHHHHHHHhhCCEEEEEEECCCHHH-HHHHHHH
Confidence 0001 1112457899999972 334455668888999888776554321 1111
Q ss_pred -HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 197 -MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 197 -l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
..+.+.....+.+.|+|+||+|+.................++..++.++++++.++.+.+..+....
T Consensus 95 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 95 YDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred HHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2333333445679999999999975332111111111223446788999999888877666555443
No 129
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.33 E-value=5.6e-12 Score=117.55 Aligned_cols=155 Identities=22% Similarity=0.315 Sum_probs=91.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc--ccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV--TRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~--Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.|+++|++|||||||+|+|++..+.|..++.. |+.+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~------------------------------------------ 38 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI------------------------------------------ 38 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE------------------------------------------
Confidence 48999999999999999999655544443321 1111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCC---eEEEEEecCCcccccH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN---SVILAISPANQDIATS 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~---~iIL~v~~a~~d~~~~ 194 (599)
....+ ...+++|||||+..... +.+..+.+..++..|+...+ .+++ +.+..... ..
T Consensus 39 ------------~~~~~----~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~~-~~ 97 (170)
T cd01876 39 ------------NFFNV----NDKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVL-LIDSRHGP-TE 97 (170)
T ss_pred ------------EEEEc----cCeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEE-EEEcCcCC-CH
Confidence 00011 12789999999865432 33345667778888887653 3434 44443332 23
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcH--HHHHhCcc--cccCCCeEEEEcCChhhhccCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNA--LDVLEGRS--YRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~--~~~~~~~~--~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
....+.+.+...+.++++|+||+|++..+... ........ .....+++.+++.++.++.+.++
T Consensus 98 ~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 98 IDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred hHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHH
Confidence 33345555555578999999999997654321 11111111 12234677788877766554433
No 130
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.32 E-value=2.3e-11 Score=121.80 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=78.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...+|+|+|.+|+|||||+|+|+|....+.+.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 566999999999999999999999876444322 2332221111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCc-ccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQ-DIA 192 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~-d~~ 192 (599)
. ..+...+++|||||+.....+ ....+.+.+.+..|+. ..+++ |+|...+. .+.
T Consensus 74 ------------------~-~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~idvI-L~V~rlD~~r~~ 130 (249)
T cd01853 74 ------------------G-TVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPDVV-LYVDRLDMYRRD 130 (249)
T ss_pred ------------------E-EECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCCEE-EEEEcCCCCCCC
Confidence 0 122467899999999765321 1133455566777886 45655 44543332 221
Q ss_pred cH--HHHHHHHHhCCC--CCceEEEeccCCCCCCCC
Q 007538 193 TS--DAMKLAREVDPT--GERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 193 ~~--~~l~la~~~d~~--g~rti~VltK~Dl~~~~~ 224 (599)
.. ..++..++.-.. -.++++|+||+|...+..
T Consensus 131 ~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 131 YLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 22 233333333221 258999999999986553
No 131
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.32 E-value=1.1e-11 Score=116.95 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh----CCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~----d~~g~rti~Vl 214 (599)
...+.+|||||.. ....+...|++.++++|++++..+..- -.+.......+ ...+.++++|+
T Consensus 42 ~~~i~l~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~D~s~~~s-~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKH-------------KLRPLWKHYYLNTQAVVFVVDSSHRDR-VSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCCh-------------hcchHHHHHhccCCEEEEEEeCCcHHH-HHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 4578999999973 235567788999999988877554321 11222222222 12347899999
Q ss_pred ccCCCCCCCC--cHHHHHhCccccc--CCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 215 TKLDLMDKGT--NALDVLEGRSYRL--QHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 215 tK~Dl~~~~~--~~~~~~~~~~~~l--~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
||.|+.+... +..+.+....... ...++.++++++.++++.+..+.....
T Consensus 108 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 108 NKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred eCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 9999975422 1222221111101 123567899998888887766654433
No 132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.32 E-value=1.2e-11 Score=118.47 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=94.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++++|||||++++.+..+ +... .|+... .
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~-----~~t~~~---------~------------------------------ 36 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEY-----VPTVFE---------N------------------------------ 36 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCC-----CCeeee---------e------------------------------
Confidence 799999999999999999999875 3222 121100 0
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 196 (599)
+ ...+.........+.||||||. +....+...|++.+|++|++++..+.. +.. ..|
T Consensus 37 -----~---~~~i~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~ 95 (187)
T cd04132 37 -----Y---VTNIQGPNGKIIELALWDTAGQ-------------EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKW 95 (187)
T ss_pred -----e---EEEEEecCCcEEEEEEEECCCc-------------hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 0000111112346789999996 344566777899999998877654422 111 113
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCc----HHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHHHHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTN----ALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~----~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
+...+... .+.|+|+|.||.|+.+.... ............+. .|+.+++.++.++++.+..+.....
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 96 FPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 33333332 36799999999999754311 01111111223344 6889999998888877766554433
No 133
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.32 E-value=7.8e-12 Score=118.88 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=90.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|||+.++|||||++++.+..| |....+.+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~------------------------------------------- 37 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDN------------------------------------------- 37 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeee-------------------------------------------
Confidence 3799999999999999999998775 33221111000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~ 195 (599)
+ ...+.+ +.....+.||||||.. ....+...|+++++++|||++..+.+ +.. ..
T Consensus 38 ------~---~~~~~~-~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~ 94 (175)
T cd01874 38 ------Y---AVTVMI-GGEPYTLGLFDTAGQE-------------DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 94 (175)
T ss_pred ------e---EEEEEE-CCEEEEEEEEECCCcc-------------chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHH
Confidence 0 001111 1112468899999983 23455667899999999888655432 211 12
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhC-------------cccccC-CCeEEEEcCChhhhccCCCH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEG-------------RSYRLQ-HPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~-------------~~~~l~-~g~~~v~~~s~~~i~~~~~~ 258 (599)
|+...+...+ +.|+|+|.||.|+.+... ..+-+.. .....+ ..|+.+++.++.++++.+..
T Consensus 95 w~~~i~~~~~-~~piilvgnK~Dl~~~~~-~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~ 169 (175)
T cd01874 95 WVPEITHHCP-KTPFLLVGTQIDLRDDPS-TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169 (175)
T ss_pred HHHHHHHhCC-CCCEEEEEECHhhhhChh-hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHH
Confidence 4444444433 579999999999865421 1111100 011233 46788888888777665543
No 134
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.32 E-value=2e-11 Score=117.27 Aligned_cols=151 Identities=12% Similarity=0.138 Sum_probs=91.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-++|+++|.+|||||||+++|++..+. ...+|..|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~--------------------------------------- 55 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTS--------------------------------------- 55 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcce---------------------------------------
Confidence 5679999999999999999999987641 1122322210
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
..+.+ +...+.++|+||. ...+.+...|++.+++++++++..+... -...
T Consensus 56 -------------~~i~~---~~~~~~l~D~~G~-------------~~~~~~~~~~~~~ad~iilV~D~~~~~s-~~~~ 105 (190)
T cd00879 56 -------------EELTI---GNIKFKTFDLGGH-------------EQARRLWKDYFPEVDGIVFLVDAADPER-FQES 105 (190)
T ss_pred -------------EEEEE---CCEEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEEECCcHHH-HHHH
Confidence 01111 1346789999996 3345667889999999988876554321 1111
Q ss_pred HHH----HHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcc------------cccCCCeEEEEcCChhhhccCCCH
Q 007538 197 MKL----AREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRS------------YRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 197 l~l----a~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~------------~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
... .+.....+.|+++|+||+|+...-. +..+.+.... ......|+.+++.+++++++.+..
T Consensus 106 ~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~ 185 (190)
T cd00879 106 KEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRW 185 (190)
T ss_pred HHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHH
Confidence 112 2222234689999999999864322 1222222111 011234788899888887766654
Q ss_pred H
Q 007538 259 I 259 (599)
Q Consensus 259 ~ 259 (599)
+
T Consensus 186 l 186 (190)
T cd00879 186 L 186 (190)
T ss_pred H
Confidence 4
No 135
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.32 E-value=1.3e-11 Score=117.10 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=88.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
-.+|+++|.+++|||||+++|++..+.+. .+|-.+ .
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~---~~t~~~---~-------------------------------------- 50 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT---SPTIGS---N-------------------------------------- 50 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc---CCcccc---c--------------------------------------
Confidence 35899999999999999999988765211 111000 0
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~~ 195 (599)
...+.+ ....+.||||||. ..+..+...|++.++++|+|++..+.+ +.. ..
T Consensus 51 -----------~~~~~~---~~~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~ 103 (174)
T cd04153 51 -----------VEEIVY---KNIRFLMWDIGGQ-------------ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKE 103 (174)
T ss_pred -----------eEEEEE---CCeEEEEEECCCC-------------HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 001111 1356899999997 345566778899999998887655432 110 11
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCc-ccccCCCeEEEEcCChhhhccCCCH
Q 007538 196 -AMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGR-SYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 196 -~l~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~-~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
...+.+.....+.|+++|+||+|+.+... +..+.+... ....+..++.+++.++.++++.+..
T Consensus 104 ~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~ 170 (174)
T cd04153 104 ELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDW 170 (174)
T ss_pred HHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHH
Confidence 11122212223589999999999875321 111222111 1122345778888888877665543
No 136
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.32 E-value=1.4e-11 Score=117.96 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=94.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|+.++|||||++++++..| +... .+|-..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~-~~T~g~-------------------------------------------- 35 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDY-IQTLGV-------------------------------------------- 35 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCC-CCccce--------------------------------------------
Confidence 799999999999999999998876 2211 111100
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--HHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--~~~l 197 (599)
.+... .+.+.+ ....+.||||+|. +.+..+...|++++++++++++..+...-. ..|+
T Consensus 36 ----~~~~~--~i~~~~-~~~~l~iwDt~G~-------------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~ 95 (182)
T cd04128 36 ----NFMEK--TISIRG-TEITFSIWDLGGQ-------------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWY 95 (182)
T ss_pred ----EEEEE--EEEECC-EEEEEEEEeCCCc-------------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 00000 111111 1356889999997 345667778999999998888765542211 2455
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCC---C--cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKG---T--NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~---~--~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
..++...+...+ |+|.||+|+...- . ...+.........+..|+.+++.++.++++.+..+..
T Consensus 96 ~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 96 RQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred HHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 555555554455 7899999996321 1 1111111111223456888999988888776655443
No 137
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.32 E-value=1.5e-11 Score=121.80 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=96.4
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
+...+|+|||+.++|||||++++++..| +... .|+...
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi~~------------------------------------ 48 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTVFE------------------------------------ 48 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCceee------------------------------------
Confidence 3456899999999999999999998876 3222 111100
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc--
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-- 192 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-- 192 (599)
.+. ..+.+. .....|.||||||. +.+..+...|+++++++|||.+..+.+ +.
T Consensus 49 --------~~~---~~i~~~-~~~v~l~iwDTaG~-------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~ 103 (232)
T cd04174 49 --------NYT---AGLETE-EQRVELSLWDTSGS-------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSA 103 (232)
T ss_pred --------eeE---EEEEEC-CEEEEEEEEeCCCc-------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHH
Confidence 000 011121 12356899999997 455677788999999998887765543 21
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcH------------HHHHhCcccccCC-CeEEEEcCChh-hhccCCCH
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNA------------LDVLEGRSYRLQH-PWVGIVNRSQA-DINRNIDM 258 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~------------~~~~~~~~~~l~~-g~~~v~~~s~~-~i~~~~~~ 258 (599)
...|+..++...+ +.++|+|.||+|+.+..... .+.........+. .|+.+++.++. ++++.+..
T Consensus 104 ~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~ 182 (232)
T cd04174 104 LKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRS 182 (232)
T ss_pred HHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHH
Confidence 1345555665554 57899999999986421100 0111111122344 47778887775 57666654
Q ss_pred HHH
Q 007538 259 IVA 261 (599)
Q Consensus 259 ~~~ 261 (599)
+..
T Consensus 183 ~~~ 185 (232)
T cd04174 183 ASL 185 (232)
T ss_pred HHH
Confidence 433
No 138
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.31 E-value=4.8e-11 Score=121.25 Aligned_cols=140 Identities=15% Similarity=0.235 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccc-cccccccEEEEEEecCCCCcc
Q 007538 11 VNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQE 89 (599)
Q Consensus 11 ~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~ 89 (599)
..+|.+++..+.+... +.++|+|+|.+|+||||++|+|+|.+....+. ..+|..|+...
T Consensus 21 q~~l~~~l~~l~~~~~----------~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~---------- 80 (313)
T TIGR00991 21 QTKLLELLGKLKEEDV----------SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS---------- 80 (313)
T ss_pred HHHHHHHHHhcccccc----------cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE----------
Confidence 4566677766665543 77899999999999999999999987522211 11222221100
Q ss_pred ceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHH
Q 007538 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM 169 (599)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~ 169 (599)
...++..+++|||||+.+.. ...+...+.
T Consensus 81 ---------------------------------------------~~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ 109 (313)
T TIGR00991 81 ---------------------------------------------RTRAGFTLNIIDTPGLIEGG------YINDQAVNI 109 (313)
T ss_pred ---------------------------------------------EEECCeEEEEEECCCCCchH------HHHHHHHHH
Confidence 11135679999999997632 234455566
Q ss_pred HHHhhc--CCCeEEEEEecCC-ccc--ccHHHHHHHHHhCCC--CCceEEEeccCCCCCC
Q 007538 170 VRSYVE--KPNSVILAISPAN-QDI--ATSDAMKLAREVDPT--GERTFGVLTKLDLMDK 222 (599)
Q Consensus 170 ~~~yi~--~~~~iIL~v~~a~-~d~--~~~~~l~la~~~d~~--g~rti~VltK~Dl~~~ 222 (599)
++.|+. .+|++++|. ..+ ..+ .....++..+.+-.. -.++|+|+|+.|..++
T Consensus 110 ik~~l~~~g~DvVLyV~-rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVD-RLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHhhcCCCCEEEEEe-ccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 777764 477766553 222 112 123344545444322 3689999999998854
No 139
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.31 E-value=3.2e-11 Score=115.62 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-++|+++|.+||||||++++++|..+.. ..+|..|+.-
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~-------------------------------------- 54 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSE-------------------------------------- 54 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceE--------------------------------------
Confidence 34789999999999999999999976411 1123222110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH-
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS- 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~~- 194 (599)
.+.+ ....+.++||||. ...+.+...|+.+++++|++++.++.+ +...
T Consensus 55 --------------~~~~---~~~~~~~~D~~G~-------------~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~ 104 (184)
T smart00178 55 --------------ELAI---GNIKFTTFDLGGH-------------QQARRLWKDYFPEVNGIVYLVDAYDKERFAESK 104 (184)
T ss_pred --------------EEEE---CCEEEEEEECCCC-------------HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHH
Confidence 0011 2356889999998 334566778999999998887765432 1111
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccc--------cCCCeEEEEcCChhhhccCCCHH
Q 007538 195 DAM-KLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYR--------LQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 195 ~~l-~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~--------l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
..+ ++.+...-.+.|+++|+||.|+...-. +..+.+.-.... -...++.+++.++.++++.+..+
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 111 122211224689999999999864221 122222110000 11236777888777776655443
No 140
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.31 E-value=8.8e-12 Score=122.97 Aligned_cols=158 Identities=12% Similarity=0.128 Sum_probs=97.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|||++|+|||||+++++...| +.... .|-
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~-~ti------------------------------------------- 46 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYE-PTI------------------------------------------- 46 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC-CCccC-Ccc-------------------------------------------
Confidence 445899999999999999999887665 21111 110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
++....+.+.+. .....+.||||||. +....+...|++.++++|+|++..+... ...
T Consensus 47 -------g~~~~~~~~~~~-~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~ 105 (219)
T PLN03071 47 -------GVEVHPLDFFTN-CGKIRFYCWDTAGQ-------------EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP 105 (219)
T ss_pred -------ceeEEEEEEEEC-CeEEEEEEEECCCc-------------hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHH
Confidence 000001111111 12357889999997 3345677789999999988876655321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.|+..++... .+.++++|.||+|+.+.......+ . .....+..|+.+++.++.++++.+..+....
T Consensus 106 ~w~~~i~~~~-~~~piilvgNK~Dl~~~~v~~~~~-~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 106 TWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV-T-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred HHHHHHHHhC-CCCcEEEEEEchhhhhccCCHHHH-H-HHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 3444444443 368999999999996433211111 1 1122346789999999999888776655443
No 141
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.31 E-value=1.2e-11 Score=115.68 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=62.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh----CCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~----d~~g~rti~Vl 214 (599)
...+.||||||. +....+...|++++|++|++++..+.+- -..+.+....+ .....|.++|+
T Consensus 43 ~~~~~l~D~~G~-------------~~~~~~~~~~~~~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRER-IGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCC-------------HhHHHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 456899999997 3456677889999999988877654321 12222222222 11357999999
Q ss_pred ccCCCCCCCC--cHHHHHh-CcccccCCCeEEEEcCChhhhccCCC
Q 007538 215 TKLDLMDKGT--NALDVLE-GRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 215 tK~Dl~~~~~--~~~~~~~-~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
||.|+.+... +....+. +........++.++++++.++++.+.
T Consensus 109 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 109 NKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred ECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 9999965422 1111111 11111122345688888888776543
No 142
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.30 E-value=4.7e-12 Score=119.08 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---HHHHHHHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---SDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~---~~~l~la~~~d~~g~rti~VltK 216 (599)
..+.+|||||.... ..+...+++.+|+++++++..+..-.. ..++.......+ +.|+++|+||
T Consensus 48 ~~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 113 (171)
T cd00157 48 VNLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTK 113 (171)
T ss_pred EEEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEcc
Confidence 45889999997431 223344668899988887665422111 123333333333 6899999999
Q ss_pred CCCCCCCCcH-----------HHHHhCcccccCC-CeEEEEcCChhhhccCC
Q 007538 217 LDLMDKGTNA-----------LDVLEGRSYRLQH-PWVGIVNRSQADINRNI 256 (599)
Q Consensus 217 ~Dl~~~~~~~-----------~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~ 256 (599)
+|+.+..... .+.........+. .|+.+++..+.++++.+
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (171)
T cd00157 114 IDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVF 165 (171)
T ss_pred HHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHH
Confidence 9998654321 0111111112222 67777777766665544
No 143
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.30 E-value=1.9e-11 Score=120.37 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=71.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|||++++|||||++++++..| +. . ..|-.+ .+.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f-~~-~-~~Tig~-~~~---------------------------------------- 37 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF-KD-T-VSTVGG-AFY---------------------------------------- 37 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CC-C-CCccce-EEE----------------------------------------
Confidence 689999999999999999999876 21 1 112111 000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~~~l 197 (599)
........+.||||||.. ....+...|++.++++|++++..+.. +.. ..++
T Consensus 38 --------------~~~~~~~~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~ 90 (220)
T cd04126 38 --------------LKQWGPYNISIWDTAGRE-------------QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRF 90 (220)
T ss_pred --------------EEEeeEEEEEEEeCCCcc-------------cchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 000012458999999972 34556778899999998887654432 111 1222
Q ss_pred HHHHHhCCCCCceEEEeccCCCCC
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMD 221 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~ 221 (599)
.........+.++|+|.||.|+.+
T Consensus 91 ~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 91 LGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHHhcCCCCcEEEEEECccccc
Confidence 223333344678999999999975
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.30 E-value=3.3e-11 Score=116.53 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=62.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...+.||||||. +.+..++..|++.+|++++|++..+. . ......+.+.....+.+.++|+||+|
T Consensus 64 ~~~~~l~DtpG~-------------~~~~~~~~~~~~~~d~~ilV~d~~~~-~-~~~~~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGH-------------ADFGGEVERVLSMVDGVLLLVDASEG-P-MPQTRFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCc-------------HHHHHHHHHHHHhcCEEEEEEECCCC-c-cHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 467899999998 34566788899999999887765442 2 12222233334445789999999999
Q ss_pred CCCCCCc-H----HHHHhC---cccccCCCeEEEEcCChhhhc
Q 007538 219 LMDKGTN-A----LDVLEG---RSYRLQHPWVGIVNRSQADIN 253 (599)
Q Consensus 219 l~~~~~~-~----~~~~~~---~~~~l~~g~~~v~~~s~~~i~ 253 (599)
+.+.... . .+.+.. ....+...++.+++.++.++.
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 129 RPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 9753321 1 121111 011234567788887776653
No 145
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.30 E-value=6.2e-12 Score=118.88 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=61.3
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~l~la~~~d~~g~rti~VltK 216 (599)
..+.+|||||... ...+...+++.+|++|++++..+.. +.. ..++...+...+ +.++++|.||
T Consensus 46 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 111 (174)
T smart00174 46 VELGLWDTAGQED-------------YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTK 111 (174)
T ss_pred EEEEEEECCCCcc-------------cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecC
Confidence 4588999999732 2345566888999998887654421 111 123333333333 6899999999
Q ss_pred CCCCCCCCcHHHHH------------hCcccccCC-CeEEEEcCChhhhccCCCH
Q 007538 217 LDLMDKGTNALDVL------------EGRSYRLQH-PWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~------------~~~~~~l~~-g~~~v~~~s~~~i~~~~~~ 258 (599)
+|+.+......++. .......+. +|+.+++.++.++++.+..
T Consensus 112 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 166 (174)
T smart00174 112 LDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEE 166 (174)
T ss_pred hhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHH
Confidence 99976332111110 001112232 6777777777776655543
No 146
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.30 E-value=4.4e-11 Score=118.17 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=67.3
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc-CCCeEEEEEecCCcc-cc-cHHHHHHHHHhC-CCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQD-IA-TSDAMKLAREVD-PTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~~~iIL~v~~a~~d-~~-~~~~l~la~~~d-~~g~rti~Vl 214 (599)
...+.||||||.. .. +...++. .+|++++|++..+.. +. ..+++..+.... ..+.|+|+|.
T Consensus 49 ~~~l~i~Dt~G~~------------~~---~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 49 ESTLVVIDHWEQE------------MW---TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred EEEEEEEeCCCcc------------hH---HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 3568899999983 11 1223455 899998877655432 11 123333333332 2468999999
Q ss_pred ccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 215 TKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
||+|+........+.........+..|+.+++..+.++++.+..+.....
T Consensus 114 NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 114 NKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99999764321111111112223567999999999999888776665544
No 147
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.29 E-value=1e-11 Score=116.56 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=62.9
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHHHHHHHhC--CCCCceEEEec
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVD--PTGERTFGVLT 215 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~la~~~d--~~g~rti~Vlt 215 (599)
..+.||||||.... .......+++.+|++|++++..+.. +. ...++..+.... ..+.|+++|+|
T Consensus 47 ~~~~i~D~~g~~~~------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 47 VSLEILDTAGQQQA------------DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred EEEEEEECCCCccc------------ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 35789999998531 0123456788999998877654432 10 122344444443 34689999999
Q ss_pred cCCCCCCCCcHHHHHhCcccccCCCeEEEEcCCh-hhhccCCCHH
Q 007538 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ-ADINRNIDMI 259 (599)
Q Consensus 216 K~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~-~~i~~~~~~~ 259 (599)
|+|+........+.........+.+|+.+++..+ .++++.+..+
T Consensus 115 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 115 KADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred CCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9998643221111111112234467888888877 4676655443
No 148
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.29 E-value=3.5e-11 Score=113.43 Aligned_cols=71 Identities=14% Similarity=0.305 Sum_probs=49.1
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh----CCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~----d~~g~rti~Vl 214 (599)
...+.+||+||. +.++.+...|+++++++|++++..+.+ ....+......+ ...+.|+++|+
T Consensus 42 ~~~~~i~D~~G~-------------~~~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 42 KYEVCIFDLGGG-------------ANFRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CEEEEEEECCCc-------------HHHHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 456899999996 445677889999999998888765533 122222222222 22478999999
Q ss_pred ccCCCCCCC
Q 007538 215 TKLDLMDKG 223 (599)
Q Consensus 215 tK~Dl~~~~ 223 (599)
||.|+.+..
T Consensus 108 NK~Dl~~~~ 116 (167)
T cd04161 108 NKQDKKNAL 116 (167)
T ss_pred eCCCCcCCC
Confidence 999997644
No 149
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.28 E-value=2e-11 Score=114.97 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=67.7
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.+|||||... ...+...|+..+|++|+|++..+..- ....++..++...+ +.|+++|.||+
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~ 114 (166)
T cd00877 49 IRFNVWDTAGQEK-------------FGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKV 114 (166)
T ss_pred EEEEEEECCCChh-------------hccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEch
Confidence 5688999999732 23345567889999988876543211 01234444444443 68999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
|+.+...... ... ........|+.+++.++.++++.+..+....
T Consensus 115 Dl~~~~~~~~-~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 115 DIKDRKVKAK-QIT-FHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred hcccccCCHH-HHH-HHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 9974332111 111 1112345699999999998887776665443
No 150
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.28 E-value=2.5e-11 Score=117.74 Aligned_cols=110 Identities=13% Similarity=0.169 Sum_probs=65.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHHHHHHHh-CCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREV-DPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~la~~~-d~~g~rti~VltK 216 (599)
..+.||||||.. .+..+...|+..+|++|++++..+.. +. ...++..+... ...+.++|+|+||
T Consensus 47 ~~l~i~D~~G~~-------------~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 113 (198)
T cd04147 47 LTLDILDTSGSY-------------SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNK 113 (198)
T ss_pred EEEEEEECCCch-------------hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Confidence 468899999973 23445667899999998877654321 11 11222222222 3357899999999
Q ss_pred CCCCCCCCc--HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 217 LDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 217 ~Dl~~~~~~--~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
+|+...... ..+.........+.+|+.+++.++.++++.+..+...
T Consensus 114 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 114 ADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred cccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 999753221 1111111111234567888888888877766655443
No 151
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.28 E-value=3.6e-11 Score=120.60 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=91.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++++|||||++++++..| +....+++ ..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-~~~y~pTi-~d-------------------------------------------- 35 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-EEQYTPTI-ED-------------------------------------------- 35 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCh-hH--------------------------------------------
Confidence 699999999999999999998776 32211111 00
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 199 (599)
+... .+.+. .....+.||||||.. .+..+...|+..+|++|+|++..+.+. -+....+
T Consensus 36 -----~~~k--~~~i~-~~~~~l~I~Dt~G~~-------------~~~~~~~~~~~~ad~iIlVfdv~~~~S-f~~i~~~ 93 (247)
T cd04143 36 -----FHRK--LYSIR-GEVYQLDILDTSGNH-------------PFPAMRRLSILTGDVFILVFSLDNRES-FEEVCRL 93 (247)
T ss_pred -----hEEE--EEEEC-CEEEEEEEEECCCCh-------------hhhHHHHHHhccCCEEEEEEeCCCHHH-HHHHHHH
Confidence 0000 01111 113567899999972 334556668889999988776554321 1222222
Q ss_pred HHHh------------CCCCCceEEEeccCCCCCCCC-cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 200 AREV------------DPTGERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 200 a~~~------------d~~g~rti~VltK~Dl~~~~~-~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
..++ ...+.++|+|+||+|+..... ...++.+.........|+.+++.++.++++.+..+..
T Consensus 94 ~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 94 REQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred HHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2222 223679999999999975322 2222111001112456899999999888876655543
No 152
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.28 E-value=1.9e-11 Score=116.14 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh----CCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~----d~~g~rti~Vl 214 (599)
...+.||||||. .....+...|+++++++|+|++.++.+- -.++......+ ...+.++++|+
T Consensus 56 ~~~l~l~D~~G~-------------~~~~~~~~~~~~~ad~ii~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~ 121 (175)
T smart00177 56 NISFTVWDVGGQ-------------DKIRPLWRHYYTNTQGLIFVVDSNDRDR-IDEAREELHRMLNEDELRDAVILVFA 121 (175)
T ss_pred CEEEEEEECCCC-------------hhhHHHHHHHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHhhCHhhcCCcEEEEE
Confidence 356889999997 3456678889999999988887655321 22222222222 12357899999
Q ss_pred ccCCCCCCCCcHHHHHh--Ccc--cccCCCeEEEEcCChhhhccCCCHH
Q 007538 215 TKLDLMDKGTNALDVLE--GRS--YRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~--~~~--~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
||.|+.+... ..++.. +.. .....-++.++++++.++.+.+..+
T Consensus 122 NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 122 NKQDLPDAMK-AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred eCcCcccCCC-HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 9999965321 122211 111 1111224568999888887765544
No 153
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.28 E-value=4.3e-11 Score=114.54 Aligned_cols=108 Identities=18% Similarity=0.272 Sum_probs=64.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh-CC---CCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-DP---TGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~-d~---~g~rti~Vl 214 (599)
...+.+|||||. +..+.+...|++++|++|++++..+.+- ...+......+ .. ...++++|+
T Consensus 60 ~~~~~l~D~~G~-------------~~~~~~~~~~~~~ad~iI~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~ 125 (182)
T PTZ00133 60 NLKFTMWDVGGQ-------------DKLRPLWRHYYQNTNGLIFVVDSNDRER-IGDAREELERMLSEDELRDAVLLVFA 125 (182)
T ss_pred CEEEEEEECCCC-------------HhHHHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhCHhhcCCCEEEEE
Confidence 356899999997 4456778889999999988887654321 12222222222 11 357899999
Q ss_pred ccCCCCCCCCcHHHHHh--CcccccCCC--eEEEEcCChhhhccCCCHHHH
Q 007538 215 TKLDLMDKGTNALDVLE--GRSYRLQHP--WVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~--~~~~~l~~g--~~~v~~~s~~~i~~~~~~~~~ 261 (599)
||.|+.+... ..++.. +....-... ++.+++.++.++++.+..+..
T Consensus 126 NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 126 NKQDLPNAMS-TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred eCCCCCCCCC-HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence 9999864322 112111 111111112 346788888888776665543
No 154
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.28 E-value=1.2e-11 Score=121.22 Aligned_cols=126 Identities=23% Similarity=0.354 Sum_probs=73.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccc--cccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~--~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
+|+|+|..+|||||++|+|+|.+.++.+. ..||..+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~-------------------------------------- 43 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS-------------------------------------- 43 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee--------------------------------------
Confidence 69999999999999999999999877763 24454331111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--HH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--~~ 195 (599)
.......+++|||||+.+.... ++++.+.+...+......+++++|| .+.. .+.. ..
T Consensus 44 -----------------~~~~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~llV-i~~~-r~t~~~~~ 102 (212)
T PF04548_consen 44 -----------------GEVDGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLLV-IPLG-RFTEEDRE 102 (212)
T ss_dssp -----------------EEETTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEEE-EETT-B-SHHHHH
T ss_pred -----------------eeecceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEEE-EecC-cchHHHHH
Confidence 0112467899999999765432 2223333434333445568887665 4554 4432 23
Q ss_pred HHHHHHHhCCC--CCceEEEeccCCCCCCCC
Q 007538 196 AMKLAREVDPT--GERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 196 ~l~la~~~d~~--g~rti~VltK~Dl~~~~~ 224 (599)
.++....+-+. -.++|+|+|..|......
T Consensus 103 ~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 103 VLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred HHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 44444444332 368999999999887654
No 155
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.27 E-value=2.9e-11 Score=113.63 Aligned_cols=113 Identities=17% Similarity=0.279 Sum_probs=72.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
||+++|++++|||||++++++..+ +.+. .|+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~-----~pt------------------------------------------- 31 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESV-----VPT------------------------------------------- 31 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccc-----ccc-------------------------------------------
Confidence 689999999999999999998764 2111 110
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 199 (599)
.++. .+ .+.. ....+.+|||||.. ..+.+...|+++++++|++++..+.. ....+...
T Consensus 32 ---~g~~--~~--~i~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~ 89 (164)
T cd04162 32 ---TGFN--SV--AIPT-QDAIMELLEIGGSQ-------------NLRKYWKRYLSGSQGLIFVVDSADSE-RLPLARQE 89 (164)
T ss_pred ---CCcc--eE--EEee-CCeEEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 0010 11 1222 24568999999972 34566778999999998887655432 11122222
Q ss_pred HHHh--CCCCCceEEEeccCCCCCCC
Q 007538 200 AREV--DPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 200 a~~~--d~~g~rti~VltK~Dl~~~~ 223 (599)
...+ ...+.|+++|.||.|+....
T Consensus 90 l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 90 LHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred HHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 2222 12578999999999986543
No 156
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.27 E-value=1.6e-11 Score=115.92 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=89.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+..+|+++|++|+|||||++++++..|-|....+ |-.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~----------------------------------------- 40 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKP----------------------------------------- 40 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCc-----------------------------------------
Confidence 4568999999999999999999998762122211 1100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.+....+ .+.+ ....+.+||++|... ...+...|++++|+++++++..+.. .-...
T Consensus 41 -------~~~~~~~--~~~~-~~~~l~~~d~~g~~~-------------~~~~~~~~~~~~d~~llv~d~~~~~-s~~~~ 96 (169)
T cd01892 41 -------RYAVNTV--EVYG-QEKYLILREVGEDEV-------------AILLNDAELAACDVACLVYDSSDPK-SFSYC 96 (169)
T ss_pred -------ceEEEEE--EECC-eEEEEEEEecCCccc-------------ccccchhhhhcCCEEEEEEeCCCHH-HHHHH
Confidence 0000011 1111 124578999999733 2345566789999998877654321 11122
Q ss_pred HHHHHHhC-CCCCceEEEeccCCCCCCCCc----HHHHHhCcccccCC-CeEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREVD-PTGERTFGVLTKLDLMDKGTN----ALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~d-~~g~rti~VltK~Dl~~~~~~----~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~ 259 (599)
..+.+.+. ..+.|+++|+||+|+.+.... ..++. ..++. .++.+++.++.++++.+..+
T Consensus 97 ~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~lf~~l 161 (169)
T cd01892 97 AEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC----RKLGLPPPLHFSSKLGDSSNELFTKL 161 (169)
T ss_pred HHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHH----HHcCCCCCEEEEeccCccHHHHHHHH
Confidence 23344442 336899999999999754321 11221 12233 35788888887776655443
No 157
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.27 E-value=2.4e-11 Score=116.28 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=94.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|++||+.++|||||++++.+..| +.... +|-..
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~------------------------------------------- 40 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE------------------------------------------- 40 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceee-------------------------------------------
Confidence 4899999999999999999998876 33221 11100
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~ 195 (599)
.+. ..+.+ ......+.||||+|. +....+...|+++++++|||.+..+.+ +.. ..
T Consensus 41 -----~~~---~~~~~-~~~~~~l~iwDtaG~-------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~ 98 (182)
T cd04172 41 -----NYT---ASFEI-DTQRIELSLWDTSGS-------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKK 98 (182)
T ss_pred -----eeE---EEEEE-CCEEEEEEEEECCCc-------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 000 01112 122356889999997 445667788999999998887755532 211 34
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC------------cHHHHHhCcccccC-CCeEEEEcCChhh-hccCCCH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT------------NALDVLEGRSYRLQ-HPWVGIVNRSQAD-INRNIDM 258 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~------------~~~~~~~~~~~~l~-~g~~~v~~~s~~~-i~~~~~~ 258 (599)
|...++...| ..++|+|.||.|+.+... ...+.........+ .+|+.+++.++.+ +++.+..
T Consensus 99 w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 99 WKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred HHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 5555666555 579999999999864211 00111111122344 3688888888876 7665543
No 158
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.26 E-value=1.7e-11 Score=116.63 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=95.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|+.++|||||+.+++...| +....+ |-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee--------------------------------------------
Confidence 699999999999999999998776 332211 1100
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 196 (599)
.+. ..+.+. .....+.||||+|. +.++.+...|+++++++|||.+..+.. +.. ..|
T Consensus 37 ----~~~---~~~~~~-~~~v~l~i~Dt~G~-------------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 37 ----NFS---ANVSVD-GNTVNLGLWDTAGQ-------------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred ----eeE---EEEEEC-CEEEEEEEEECCCC-------------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 010 011222 12357899999997 344566777999999999987654432 222 245
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCC----------cHHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGT----------NALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~----------~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+..++...+ +.++++|.||+|+.+... ...+.........+. +|+.+++.++.++++.+..+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHH
Confidence 555555544 689999999999975421 011111111223344 588889888888876665444
No 159
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.26 E-value=2.5e-11 Score=109.63 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=56.3
Q ss_pred EEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 144 LIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 144 lvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
+|||||-+--. ..+..-......++|+|+++.++......-+.. +++.. ..|+|||+||+|+....
T Consensus 40 ~IDTPGEyiE~---------~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~--fa~~f---~~pvIGVITK~Dl~~~~ 105 (143)
T PF10662_consen 40 TIDTPGEYIEN---------PRFYHALIVTAQDADVVLLLQDATEPRSVFPPG--FASMF---NKPVIGVITKIDLPSDD 105 (143)
T ss_pred EEECChhheeC---------HHHHHHHHHHHhhCCEEEEEecCCCCCccCCch--hhccc---CCCEEEEEECccCccch
Confidence 59999964311 223333445566899886665443322112222 33333 47999999999999443
Q ss_pred CcH---HHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 224 TNA---LDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 224 ~~~---~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
.+. .+.++.--. ...|.|++.++++++++.+.
T Consensus 106 ~~i~~a~~~L~~aG~---~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 106 ANIERAKKWLKNAGV---KEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred hhHHHHHHHHHHcCC---CCeEEEECCCCcCHHHHHHH
Confidence 332 233332111 23588899888888765543
No 160
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.26 E-value=9.8e-11 Score=111.97 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=66.1
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh-C---CCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-D---PTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~-d---~~g~rti~Vl 214 (599)
...+.||||||. +..+.+...|++++|++|+|++..+.+- -..+......+ . ..+.++++|+
T Consensus 60 ~~~~~i~D~~Gq-------------~~~~~~~~~~~~~a~~iI~V~D~s~~~s-~~~~~~~l~~~l~~~~~~~~piilv~ 125 (181)
T PLN00223 60 NISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRDR-VVEARDELHRMLNEDELRDAVLLVFA 125 (181)
T ss_pred CEEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEEeCCcHHH-HHHHHHHHHHHhcCHhhCCCCEEEEE
Confidence 356899999996 4567788999999999988877654321 12222222222 1 2367999999
Q ss_pred ccCCCCCCCCcHHHHHhCc-cccc-CCC--eEEEEcCChhhhccCCCHHHH
Q 007538 215 TKLDLMDKGTNALDVLEGR-SYRL-QHP--WVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~~~-~~~l-~~g--~~~v~~~s~~~i~~~~~~~~~ 261 (599)
||.|+.+... ..++.... ...+ ... ++.+++++++++.+.+..+..
T Consensus 126 NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 175 (181)
T PLN00223 126 NKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
T ss_pred ECCCCCCCCC-HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHH
Confidence 9999875432 22221110 0111 112 345788999888877665543
No 161
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.2e-10 Score=120.53 Aligned_cols=184 Identities=20% Similarity=0.283 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCcc
Q 007538 10 LVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQE 89 (599)
Q Consensus 10 ~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~ 89 (599)
..++|..+...+.+..+ +|++.|+.|+||||++||++..++||.|.|.||.|-+++.= + ++...
T Consensus 94 ~~~~l~~i~~~l~r~~m-------------KV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Veg--a-dG~e~ 157 (749)
T KOG0448|consen 94 YEDKLDAIDEVLARRHM-------------KVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEG--A-DGAEA 157 (749)
T ss_pred HHHHHHHHHHHHhhccc-------------EEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecc--c-CCcce
Confidence 34455555555554433 89999999999999999999999999999999999977762 2 22222
Q ss_pred ceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCC------CCcEEEeCCCCCccCCCCCCccHH
Q 007538 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNV------VNLTLIDLPGLTKVAVEGQPDTIV 163 (599)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~------~~ltlvDtPGi~~~~~~~q~~~~~ 163 (599)
+....+.+ .-.|...+...+.. ... .+. ....--+.|+.|+. .++.++|.||+.-.+
T Consensus 158 vl~~~~s~--ek~d~~ti~~~~ha----L~~-~~~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------- 220 (749)
T KOG0448|consen 158 VLATEGSE--EKIDMKTINQLAHA----LKP-DKD-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------- 220 (749)
T ss_pred eeccCCCc--ccccHHHHhHHHHh----cCc-ccc-cCcceEEEEEecCccchhhhccceeccCCCCCCch---------
Confidence 22211111 11111122111111 100 000 11223345666654 489999999996533
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHH
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDV 229 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~ 229 (599)
.....+.++...+|++|||+. +...+ +..+.++...+......++++.||+|......++.+.
T Consensus 221 -e~tswid~~cldaDVfVlV~N-aEntl-t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~ 283 (749)
T KOG0448|consen 221 -ELTSWIDSFCLDADVFVLVVN-AENTL-TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKED 283 (749)
T ss_pred -hhhHHHHHHhhcCCeEEEEec-CccHh-HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHH
Confidence 335667888889998888665 44444 5566678777777777788888999998776655433
No 162
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.25 E-value=2.8e-11 Score=115.37 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=75.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|+.++|||||++++.+..| |.... +|-.. .
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~-~t~~~---~---------------------------------------- 37 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYV-PTVFE---N---------------------------------------- 37 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcC-CceEE---E----------------------------------------
Confidence 799999999999999999998875 43321 11100 0
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 196 (599)
+. ..+.+.+ ....+.||||||. +....+...|+++++++|+|.+..+.+ +.. ..|
T Consensus 38 -----~~---~~~~~~~-~~~~l~iwDt~G~-------------~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 38 -----YT---ASFEIDE-QRIELSLWDTSGS-------------PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred -----EE---EEEEECC-EEEEEEEEECCCc-------------hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 00 0111221 2356889999996 344556677999999998887655432 211 345
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~ 221 (599)
...++...+ ..++++|.||+|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 555666555 579999999999964
No 163
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=5.3e-12 Score=116.96 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=102.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+||++|+.|+|||||+.++.-.+|.+ ....+
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e-~~e~T----------------------------------------------- 37 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHE-NIEPT----------------------------------------------- 37 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCcccc-ccccc-----------------------------------------------
Confidence 489999999999999999999888722 11100
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
.+..|-...+. + +.....+.||||.|. +.+..+...|.++++++|+|.+-.+.+- -..+..
T Consensus 38 --IGaaF~tktv~--~-~~~~ikfeIWDTAGQ-------------ERy~slapMYyRgA~AAivvYDit~~~S-F~~aK~ 98 (200)
T KOG0092|consen 38 --IGAAFLTKTVT--V-DDNTIKFEIWDTAGQ-------------ERYHSLAPMYYRGANAAIVVYDITDEES-FEKAKN 98 (200)
T ss_pred --cccEEEEEEEE--e-CCcEEEEEEEEcCCc-------------ccccccccceecCCcEEEEEEecccHHH-HHHHHH
Confidence 11222222222 1 222456789999998 5568889999999999988876544332 233333
Q ss_pred HHHHhC---CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 199 LAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 199 la~~~d---~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
+.+++. +...-+.+|.||+|+.+......+-.......-++.|+.+++.++.++++.+..+.....+
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence 444433 3334455699999999854321121222233466889999999999988877666655444
No 164
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.24 E-value=4.5e-11 Score=113.12 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=69.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|+++||||||++++.+..+ |....+ |-.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~-t~~~------------------------------------------- 36 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVP-TVFE------------------------------------------- 36 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-cccc-------------------------------------------
Confidence 5899999999999999999998765 322111 1000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~ 195 (599)
.+ ...+.+.+ ....+.||||||.. ....+...++.++|+++++.+..+.+ +.. ..
T Consensus 37 -----~~---~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~ 94 (175)
T cd01870 37 -----NY---VADIEVDG-KQVELALWDTAGQE-------------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 94 (175)
T ss_pred -----ce---EEEEEECC-EEEEEEEEeCCCch-------------hhhhccccccCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 00111211 22468899999972 22334445778899888766544321 111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
+...++... .+.|+++|+||.|+.+.
T Consensus 95 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 95 WTPEVKHFC-PNVPIILVGNKKDLRND 120 (175)
T ss_pred HHHHHHhhC-CCCCEEEEeeChhcccC
Confidence 333334333 36799999999998754
No 165
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.24 E-value=2.7e-11 Score=116.58 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=65.9
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~l~la~~~d~~g~rti~VltK 216 (599)
..+.||||||.. ....+...|++.++++|+|.+..+.+ +.. ..|+..++...+ +.++++|.||
T Consensus 48 ~~l~i~Dt~G~~-------------~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQE-------------EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCCh-------------hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 568999999972 23445566889999998887654432 221 124444544333 6899999999
Q ss_pred CCCCCCCCcHHHH----------HhCc--ccccC-CCeEEEEcCChhhhccCCCHHHH
Q 007538 217 LDLMDKGTNALDV----------LEGR--SYRLQ-HPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 217 ~Dl~~~~~~~~~~----------~~~~--~~~l~-~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.|+.+.......+ -++. ....+ ..|+.+++.++.++++.+..+..
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~ 171 (189)
T cd04134 114 CDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAAR 171 (189)
T ss_pred hhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHH
Confidence 9997543211000 0000 11122 46888999988888777655443
No 166
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.24 E-value=4.3e-11 Score=113.65 Aligned_cols=151 Identities=21% Similarity=0.212 Sum_probs=89.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|+.++|||||+.++++..| +.... +|-.+ .
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f-~~~~~-~t~~~---~---------------------------------------- 37 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF-PGEYI-PTVFD---N---------------------------------------- 37 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcCC-Cccee---e----------------------------------------
Confidence 799999999999999999998765 32221 11000 0
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 196 (599)
+ ...+.+. .....+.||||||. +....+...|++++|++|++++..+.+ +.. ..|
T Consensus 38 -----~---~~~~~~~-~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~ 95 (174)
T cd01871 38 -----Y---SANVMVD-GKPVNLGLWDTAGQ-------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 95 (174)
T ss_pred -----e---EEEEEEC-CEEEEEEEEECCCc-------------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 0011111 12246789999996 334556677899999999887765532 111 124
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHh----------C--cccccC-CCeEEEEcCChhhhccCCCH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE----------G--RSYRLQ-HPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~----------~--~~~~l~-~g~~~v~~~s~~~i~~~~~~ 258 (599)
+...+...+ ..|+++|.||+|+.+.......+.. + ....++ ..|+.+++.++.++++.+..
T Consensus 96 ~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 169 (174)
T cd01871 96 YPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDE 169 (174)
T ss_pred HHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHH
Confidence 444444433 6899999999999653211111100 0 011222 35778888887777665543
No 167
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.23 E-value=7.4e-11 Score=117.40 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999863
No 168
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.23 E-value=8.2e-11 Score=113.52 Aligned_cols=105 Identities=13% Similarity=0.226 Sum_probs=59.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--HHHHHHHHhCCCCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--DAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~--~~l~la~~~d~~g~rti~VltK 216 (599)
...++||||||.. .+.......+..+|+++++++... ....+ +.+.++.. .+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~-------------~~~~~~~~~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~~~---~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHA-------------SLIRTIIGGAQIIDLMLLVVDATK-GIQTQTAECLVIGEI---LCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEEECCC-CccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 4679999999972 112222344567888888766443 22111 22333322 36799999999
Q ss_pred CCCCCCCCc--HHHHHhCc----c---cccCCCeEEEEcCChhhhccCCCHHH
Q 007538 217 LDLMDKGTN--ALDVLEGR----S---YRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 217 ~Dl~~~~~~--~~~~~~~~----~---~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+|+...... ..+.+... . ......++.+++.++.++++++..+.
T Consensus 130 ~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~ 182 (192)
T cd01889 130 IDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLN 182 (192)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 999854321 11111110 0 12345688899988887766554443
No 169
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.23 E-value=6.9e-11 Score=114.01 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=94.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+++|+.++|||||+.+++...| |... .+|-.. .
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-~~t~~~---~--------------------------------------- 39 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-IPTVFD---N--------------------------------------- 39 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-CCceEe---e---------------------------------------
Confidence 4899999999999999999998775 3222 111000 0
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~ 195 (599)
+ ...+.+ ......+.||||||. +.++.+...|+++++++|+|.+..+.+ +.. ..
T Consensus 40 ------~---~~~~~~-~~~~~~l~i~Dt~G~-------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~ 96 (191)
T cd01875 40 ------Y---SAQTAV-DGRTVSLNLWDTAGQ-------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHK 96 (191)
T ss_pred ------e---EEEEEE-CCEEEEEEEEECCCc-------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 0 001112 122356889999998 556677888999999998887655432 111 12
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHH------------hCcccccC-CCeEEEEcCChhhhccCCCHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVL------------EGRSYRLQ-HPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~------------~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
|....+...+ +.|+++|.||.|+.+.......+. .......+ .+|+.+++.++.++++.+..+..
T Consensus 97 w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 97 WHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred HHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 3333333333 689999999999965422110000 00111233 46888999888888776655443
No 170
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.23 E-value=7.5e-11 Score=111.35 Aligned_cols=150 Identities=19% Similarity=0.308 Sum_probs=87.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-++|+++|.+|||||||+++|.|..+ +. ..|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~------~~~----------------------------------------- 44 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-SH------ITP----------------------------------------- 44 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-cc------cCC-----------------------------------------
Confidence 456899999999999999999999754 10 011
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--~ 194 (599)
+.++.... +.. ....+.+||+||. ..+..++..|++.+++++++++..+...-. .
T Consensus 45 -----t~g~~~~~----i~~-~~~~~~~~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~ 101 (173)
T cd04155 45 -----TQGFNIKT----VQS-DGFKLNVWDIGGQ-------------RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAG 101 (173)
T ss_pred -----CCCcceEE----EEE-CCEEEEEEECCCC-------------HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHH
Confidence 00010001 111 2356889999997 344566778899999988877655422101 1
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCc-ccccC---CCeEEEEcCChhhhccCCCH
Q 007538 195 DAM-KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGR-SYRLQ---HPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 195 ~~l-~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~-~~~l~---~g~~~v~~~s~~~i~~~~~~ 258 (599)
.++ .+.+.....+.|+++|+||+|+.+... ..++.... ...+. ..++.+++.++.++++.+..
T Consensus 102 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 102 AELVELLEEEKLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 111 122222234689999999999975432 22222111 11111 13467888888877665543
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.23 E-value=7e-11 Score=131.74 Aligned_cols=155 Identities=18% Similarity=0.269 Sum_probs=93.3
Q ss_pred ccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
....|.|+++|+.++|||||+++|.+..+.....+..|.-.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i--------------------------------------- 124 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI--------------------------------------- 124 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc---------------------------------------
Confidence 34679999999999999999999998776322211111000
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
| .. .+..++...++||||||.. .+..+...+...+|++||++. ++... ..
T Consensus 125 -----g--------~~--~v~~~~~~~i~~iDTPGhe-------------~F~~~r~rga~~aDiaILVVd-a~dgv-~~ 174 (587)
T TIGR00487 125 -----G--------AY--HVENEDGKMITFLDTPGHE-------------AFTSMRARGAKVTDIVVLVVA-ADDGV-MP 174 (587)
T ss_pred -----e--------EE--EEEECCCcEEEEEECCCCc-------------chhhHHHhhhccCCEEEEEEE-CCCCC-CH
Confidence 0 00 1112223379999999972 334556678889999988774 44332 23
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhCc-c----cccCCCeEEEEcCChhhhccCCCH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGR-S----YRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~-~~~~~~~~~-~----~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
.....++.....+.|+|+++||+|+.+... ...+.+... . +.....++++++.++.++++++..
T Consensus 175 qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~ 244 (587)
T TIGR00487 175 QTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM 244 (587)
T ss_pred hHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHh
Confidence 333444445556789999999999964321 122222111 0 111134777888887777655543
No 172
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.22 E-value=9.5e-11 Score=130.43 Aligned_cols=133 Identities=18% Similarity=0.244 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..|.|+|+|++++|||||+|+|+|..+.....+..|+-.-.... .. +
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v-~~--------------------------------~ 49 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI-PM--------------------------------D 49 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe-ee--------------------------------c
Confidence 57899999999999999999999987644444444432100000 00 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
...+..... ... .++. ...+.++||||||. +.+..+...+++.+|+++|+++.. .+. ....
T Consensus 50 ~~~~~~~~~-~~~--~~v~-~~~~~l~~iDTpG~-------------e~f~~l~~~~~~~aD~~IlVvD~~-~g~-~~qt 110 (590)
T TIGR00491 50 VIEGICGDL-LKK--FKIR-LKIPGLLFIDTPGH-------------EAFTNLRKRGGALADLAILIVDIN-EGF-KPQT 110 (590)
T ss_pred ccccccccc-ccc--cccc-cccCcEEEEECCCc-------------HhHHHHHHHHHhhCCEEEEEEECC-cCC-CHhH
Confidence 000000000 000 0111 11346999999997 445566777889999988876543 332 1222
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~ 221 (599)
...+..+...+.|.++|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 3333334445789999999999974
No 173
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.21 E-value=1e-10 Score=114.38 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=62.4
Q ss_pred cCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--HHHHHHHH
Q 007538 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--DAMKLARE 202 (599)
Q Consensus 125 ~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~--~~l~la~~ 202 (599)
++.+.....+ ......+.||||||.. .+...+..+++.+|++|++++. ......+ ....+++.
T Consensus 63 ~T~~~~~~~~-~~~~~~~~liDTpG~~-------------~~~~~~~~~~~~ad~~llVvD~-~~~~~~~~~~~~~~~~~ 127 (208)
T cd04166 63 ITIDVAYRYF-STPKRKFIIADTPGHE-------------QYTRNMVTGASTADLAILLVDA-RKGVLEQTRRHSYILSL 127 (208)
T ss_pred cCeecceeEE-ecCCceEEEEECCcHH-------------HHHHHHHHhhhhCCEEEEEEEC-CCCccHhHHHHHHHHHH
Confidence 4444433333 3456789999999972 2222345578899998887664 4333221 12233333
Q ss_pred hCCCCCceEEEeccCCCCCCCCcH----HHHHhCcccccC---CCeEEEEcCChhhhccC
Q 007538 203 VDPTGERTFGVLTKLDLMDKGTNA----LDVLEGRSYRLQ---HPWVGIVNRSQADINRN 255 (599)
Q Consensus 203 ~d~~g~rti~VltK~Dl~~~~~~~----~~~~~~~~~~l~---~g~~~v~~~s~~~i~~~ 255 (599)
.. ..++|+|+||+|+.+..... ...++.....++ ..++.+++.++.++.+.
T Consensus 128 ~~--~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 128 LG--IRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cC--CCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 21 14578899999997532211 111111111222 23788999888777643
No 174
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.21 E-value=3.9e-11 Score=113.39 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=58.9
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~l~la~~~d~~g~rti~VltK 216 (599)
..+.+|||||... ...+...+++.+++++++++..+.. +.. ..+....+.. ..+.+.++|+||
T Consensus 48 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK 113 (174)
T cd04135 48 YLLGLYDTAGQED-------------YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQ 113 (174)
T ss_pred EEEEEEeCCCccc-------------ccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEc
Confidence 3478999999733 1223445788899988877554431 111 1233444444 457899999999
Q ss_pred CCCCCCCCcHHHH------------HhCcccccCC-CeEEEEcCChhhhccCCC
Q 007538 217 LDLMDKGTNALDV------------LEGRSYRLQH-PWVGIVNRSQADINRNID 257 (599)
Q Consensus 217 ~Dl~~~~~~~~~~------------~~~~~~~l~~-g~~~v~~~s~~~i~~~~~ 257 (599)
+|+.+.......+ .......++. .|+.+++.++.++++.+.
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~ 167 (174)
T cd04135 114 IDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFD 167 (174)
T ss_pred hhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHH
Confidence 9987543211100 0000112222 477778877777766554
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.21 E-value=9.6e-11 Score=132.51 Aligned_cols=160 Identities=17% Similarity=0.291 Sum_probs=97.1
Q ss_pred cccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHH
Q 007538 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (599)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (599)
+....|.|+|+|+.++|||||+++|.+..+.....+..|.-
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~--------------------------------------- 280 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQK--------------------------------------- 280 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccc---------------------------------------
Confidence 34578999999999999999999999876521111111100
Q ss_pred HHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 007538 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (599)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~ 193 (599)
+....+.+.. ......++||||||. +.+..+...++..+|++||||. +.... .
T Consensus 281 -----------i~~~~v~~~~-~~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaILVVD-A~dGv-~ 333 (742)
T CHL00189 281 -----------IGAYEVEFEY-KDENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAILIIA-ADDGV-K 333 (742)
T ss_pred -----------cceEEEEEEe-cCCceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEEEEEE-CcCCC-C
Confidence 0000111111 123467999999997 4567777889999999988775 43332 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhCc-ccc----cCCCeEEEEcCChhhhccCCCHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGR-SYR----LQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~-~~~~~~~~~-~~~----l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
......++.+...+.|+|+|+||+|+.+... .....+... ..+ ...+++++++.++.++++++..+
T Consensus 334 ~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I 405 (742)
T CHL00189 334 PQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETI 405 (742)
T ss_pred hhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence 2333344445556789999999999975321 122222110 111 12457888888888777655543
No 176
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.2e-11 Score=105.10 Aligned_cols=123 Identities=19% Similarity=0.309 Sum_probs=92.4
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
.-|.+||+||..++||+.|+..++.. ++|-|.|.+--.-..+..
T Consensus 5 kflfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmikt----------------------------------- 48 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKT----------------------------------- 48 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEE-----------------------------------
Confidence 46889999999999999999999976 457776643322222221
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--ccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~ 193 (599)
+++.+ ....|.||||.|. +.++.++.+|.+.++++||+.+-.... -..
T Consensus 49 ----------------vev~g-ekiklqiwdtagq-------------erfrsitqsyyrsahalilvydiscqpsfdcl 98 (213)
T KOG0095|consen 49 ----------------VEVNG-EKIKLQIWDTAGQ-------------ERFRSITQSYYRSAHALILVYDISCQPSFDCL 98 (213)
T ss_pred ----------------EEECC-eEEEEEEeeccch-------------HHHHHHHHHHhhhcceEEEEEecccCcchhhh
Confidence 12222 2356899999998 889999999999999999986543321 125
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~ 224 (599)
.+|++-..++.....-.|+|.||+|+.++.+
T Consensus 99 pewlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 99 PEWLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred HHHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 7899888888887788899999999988754
No 177
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.20 E-value=5.7e-11 Score=133.07 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=71.1
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
.++.+|||||..+..... .. +.+.+.|+. .+|.++++++..+ .++.+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aDvvI~VvDat~----ler~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPDLVVNVVDASN----LERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCccc----hH---HHHHHHHHhhcCCCEEEEEecCCc----chhhHHHHHHHHhcCCCEEEEEehh
Confidence 468999999997643221 11 234555654 6888777665443 2344556666666789999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
|+.++.....+ .+.....++.+++.++++++.++++.++.+.+
T Consensus 110 Dl~~~~~i~~d-~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRID-EEKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhh-HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99754322111 11122345678999999999999887766554
No 178
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.20 E-value=2e-11 Score=117.53 Aligned_cols=70 Identities=29% Similarity=0.381 Sum_probs=47.9
Q ss_pred cCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEec
Q 007538 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLT 215 (599)
Q Consensus 136 ~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~Vlt 215 (599)
......++|+||||. ..+...+...++.+|++|++|+ +..+. .......++.+...+.|.|+|+|
T Consensus 66 ~~~~~~i~~iDtPG~-------------~~f~~~~~~~~~~~D~ailvVd-a~~g~-~~~~~~~l~~~~~~~~p~ivvlN 130 (188)
T PF00009_consen 66 NENNRKITLIDTPGH-------------EDFIKEMIRGLRQADIAILVVD-ANDGI-QPQTEEHLKILRELGIPIIVVLN 130 (188)
T ss_dssp TESSEEEEEEEESSS-------------HHHHHHHHHHHTTSSEEEEEEE-TTTBS-THHHHHHHHHHHHTT-SEEEEEE
T ss_pred cccccceeecccccc-------------cceeecccceecccccceeeee-ccccc-ccccccccccccccccceEEeee
Confidence 345678999999997 2234445556889999877665 44444 33344455555555778999999
Q ss_pred cCCCC
Q 007538 216 KLDLM 220 (599)
Q Consensus 216 K~Dl~ 220 (599)
|+|+.
T Consensus 131 K~D~~ 135 (188)
T PF00009_consen 131 KMDLI 135 (188)
T ss_dssp TCTSS
T ss_pred eccch
Confidence 99998
No 179
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.20 E-value=5.6e-11 Score=112.53 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=62.0
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~l~la~~~d~~g~rti~VltK 216 (599)
..+.||||||.. ....+...|++++|++|++++..+.. +.. ..++...+... .+.++++|.||
T Consensus 48 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQD-------------EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCCh-------------hhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeC
Confidence 467899999983 23444556889999998887655432 211 22443444332 35899999999
Q ss_pred CCCCCCCCcHHHH------------HhCcccccCC-CeEEEEcCChhhhccCCC
Q 007538 217 LDLMDKGTNALDV------------LEGRSYRLQH-PWVGIVNRSQADINRNID 257 (599)
Q Consensus 217 ~Dl~~~~~~~~~~------------~~~~~~~l~~-g~~~v~~~s~~~i~~~~~ 257 (599)
+|+.........+ ........+. .|+.++++++.++++.++
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~ 167 (173)
T cd04130 114 ADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFD 167 (173)
T ss_pred hhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 9996532111111 1111122333 688888888887766553
No 180
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.20 E-value=9.8e-11 Score=106.07 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH----HHHHHhCCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM----KLAREVDPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l----~la~~~d~~g~rti~Vl 214 (599)
...+++||+||.... ......+++.+++++++++..+. ....... .........+.++++|+
T Consensus 44 ~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 44 KVKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVYDVTDR-ESFENVKEWLLLILINKEGENIPIILVG 109 (157)
T ss_pred EEEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 456899999998432 23336688899988777655442 2122221 23334455679999999
Q ss_pred ccCCCCCCCCcHHHH-HhCcccccCCCeEEEEcCChhhhcc
Q 007538 215 TKLDLMDKGTNALDV-LEGRSYRLQHPWVGIVNRSQADINR 254 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~-~~~~~~~l~~g~~~v~~~s~~~i~~ 254 (599)
||+|+.......... ..........+++.+++..+.++.+
T Consensus 110 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 110 NKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred eccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHH
Confidence 999998654322211 1111223356788888887765544
No 181
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.20 E-value=5.4e-11 Score=110.98 Aligned_cols=153 Identities=17% Similarity=0.258 Sum_probs=97.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|||+.++|||||++++.+..| |.... .|-.. +..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~-~~~---------------------------------------- 37 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYI-PTIGI-DSY---------------------------------------- 37 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSE-TTSSE-EEE----------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccc-ccccc-ccc----------------------------------------
Confidence 689999999999999999999875 33221 12100 000
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~~~~l 197 (599)
...+.+. .....+.|||+||.. .+..+...++++++++|++.+..+.. -....|+
T Consensus 38 ---------~~~~~~~-~~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 38 ---------SKEVSID-GKPVNLEIWDTSGQE-------------RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWL 94 (162)
T ss_dssp ---------EEEEEET-TEEEEEEEEEETTSG-------------GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH
T ss_pred ---------ccccccc-ccccccccccccccc-------------ccccccccccccccccccccccccccccccccccc
Confidence 0011111 223468899999962 23455667899999998887654422 1123566
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
.......+...++++|.||.|+.+...-..+.........+.+|+.+++..+.++.+.+..
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 6667777766899999999999873322112122223345588999999988887765543
No 182
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.3e-11 Score=119.85 Aligned_cols=169 Identities=19% Similarity=0.279 Sum_probs=104.3
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcc---cccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPR---GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~---~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (599)
.+-|.|.++|..|.||||+|+.|++.++ |. |..++|.+-+.+-...+ .++.+-....-.+.. .|..+...
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~-e~~ipGnal~vd~~~---pF~gL~~F-- 128 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDE-EGSIPGNALVVDAKK---PFRGLNKF-- 128 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCc-ccccCCceeeecCCC---chhhhhhh--
Confidence 4789999999999999999999999986 52 33445544433332221 111111111111122 22222221
Q ss_pred HHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 007538 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (599)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~ 192 (599)
|.+|-..-.+..+.++-...++||||||+-++..+ .-+-.-.+...+.=|+.++|.|||+.+++.-|+
T Consensus 129 ---------G~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI- 196 (532)
T KOG1954|consen 129 ---------GNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQ--RISRGYDFTGVLEWFAERVDRIILLFDAHKLDI- 196 (532)
T ss_pred ---------HHHHHHHHHHhcCChhhhhheeeeccCcccccchh--cccccCChHHHHHHHHHhccEEEEEechhhccc-
Confidence 11222222222344555678999999999875432 111112244566678999999999999998887
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
..+.-+.+..+......+-+|+||.|.++..
T Consensus 197 sdEf~~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 197 SDEFKRVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred cHHHHHHHHHhhCCcceeEEEeccccccCHH
Confidence 4444556777777778999999999999764
No 183
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.19 E-value=1.4e-10 Score=106.37 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~ 68 (599)
++|+++|.++||||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 589999999999999999999987 45444
No 184
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.18 E-value=8.7e-11 Score=122.45 Aligned_cols=133 Identities=27% Similarity=0.375 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCC-----CcccccccccccEEEEE
Q 007538 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDF-----LPRGSGIVTRRPLVLQL 80 (599)
Q Consensus 6 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~-----lP~~~~~~Tr~p~~~~l 80 (599)
++..+++++++++..+..... .|+|+|++|+||||++|||-|..- -|+|..-+|..|
T Consensus 16 ~~~~~~s~i~~~l~~~~~~~l-------------~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~----- 77 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDNAPL-------------NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP----- 77 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH--E-------------EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS------
T ss_pred CHHHHHHHHHHHHHHhhcCce-------------EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC-----
Confidence 567788899999888876543 799999999999999999988531 111111111111
Q ss_pred EecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCc
Q 007538 81 HKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPD 160 (599)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~ 160 (599)
- ....|..++++|||+||+......
T Consensus 78 -------------------------------------------------~--~Y~~p~~pnv~lWDlPG~gt~~f~---- 102 (376)
T PF05049_consen 78 -------------------------------------------------T--PYPHPKFPNVTLWDLPGIGTPNFP---- 102 (376)
T ss_dssp -------------------------------------------------E--EEE-SS-TTEEEEEE--GGGSS------
T ss_pred -------------------------------------------------e--eCCCCCCCCCeEEeCCCCCCCCCC----
Confidence 1 245688899999999999653211
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCC
Q 007538 161 TIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 161 ~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl 219 (599)
..+.++.+ -+..-|.+|++. + ..+ +.....+|+++...|++.++|-||+|.
T Consensus 103 -~~~Yl~~~---~~~~yD~fiii~-s--~rf-~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 -PEEYLKEV---KFYRYDFFIIIS-S--ERF-TENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp -HHHHHHHT---TGGG-SEEEEEE-S--SS---HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred -HHHHHHHc---cccccCEEEEEe-C--CCC-chhhHHHHHHHHHcCCcEEEEEecccc
Confidence 11112111 244567665533 2 233 344556899998889999999999995
No 185
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.18 E-value=1.2e-10 Score=115.07 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=49.6
Q ss_pred EecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh-cCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEE
Q 007538 134 IYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFG 212 (599)
Q Consensus 134 i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~ 212 (599)
++......++||||||.. +..+.+..... ..+|.+++++ ++..+. ......++..+...+.|.++
T Consensus 78 ~~~~~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D~~llVv-da~~g~-~~~d~~~l~~l~~~~ip~iv 143 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPDYAMLVV-AANAGI-IGMTKEHLGLALALNIPVFV 143 (224)
T ss_pred eeeeCCcEEEEEECCCcH------------HHHHHHHHhhcccCCCEEEEEE-ECCCCC-cHHHHHHHHHHHHcCCCEEE
Confidence 344456789999999972 22233333322 3688876655 455554 34445566666667889999
Q ss_pred EeccCCCCCCC
Q 007538 213 VLTKLDLMDKG 223 (599)
Q Consensus 213 VltK~Dl~~~~ 223 (599)
|+||+|+.++.
T Consensus 144 vvNK~D~~~~~ 154 (224)
T cd04165 144 VVTKIDLAPAN 154 (224)
T ss_pred EEECccccCHH
Confidence 99999997543
No 186
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.17 E-value=8.9e-11 Score=113.99 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=74.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHHHHHHHHhCCCCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~la~~~d~~g~rti~VltK 216 (599)
...+.||||||. +.+..+...|+++++++|+|++..+.. + ....|+..++... .+.++++|.||
T Consensus 43 ~~~l~iwDt~G~-------------e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 43 PIRFNVWDTAGQ-------------EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEEECCCc-------------hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 356889999998 456778888999999998887655432 1 1123444455444 36899999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
+|+....... +.+. .....+..|+.+++.++.++.+.+..+.....
T Consensus 109 ~Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 109 VDVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred cccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9986432211 1111 11234568999999999999888877665443
No 187
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.17 E-value=1.8e-10 Score=113.57 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=74.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|||++++|||||++++++..| |.... +|-..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~-pTi~~-------------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYV-PTVFE-------------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccC-Ccccc--------------------------------------------
Confidence 799999999999999999998875 43321 11110
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 196 (599)
.+ ...+.+. .....|.||||||. +.+..+...|++.+|++|+|++..+.+ +.. ..|
T Consensus 37 ----~~---~~~~~~~-~~~v~L~iwDt~G~-------------e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w 95 (222)
T cd04173 37 ----NY---TASFEID-KRRIELNMWDTSGS-------------SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKW 95 (222)
T ss_pred ----ce---EEEEEEC-CEEEEEEEEeCCCc-------------HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111221 22356889999997 445566777999999998887765532 111 123
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
....+...+ +.|+|+|.||+|+.+.
T Consensus 96 ~~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhCC-CCCEEEEEECcccccc
Confidence 333333333 5899999999999653
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.15 E-value=2.1e-10 Score=128.44 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCc-eEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGER-TFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~r-ti~VltK 216 (599)
..++|||+||. +.+......++.++|+++|+++. +.+. .+.+.+.+++. .+.+ .|+|+||
T Consensus 50 ~~v~~iDtPGh-------------e~f~~~~~~g~~~aD~aILVVDa-~~G~~~qT~ehl~il~~---lgi~~iIVVlNK 112 (581)
T TIGR00475 50 YRLGFIDVPGH-------------EKFISNAIAGGGGIDAALLVVDA-DEGVMTQTGEHLAVLDL---LGIPHTIVVITK 112 (581)
T ss_pred EEEEEEECCCH-------------HHHHHHHHhhhccCCEEEEEEEC-CCCCcHHHHHHHHHHHH---cCCCeEEEEEEC
Confidence 67899999996 34445556678899998886654 4332 12233334433 4566 9999999
Q ss_pred CCCCCCCCc------HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 217 LDLMDKGTN------ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 217 ~Dl~~~~~~------~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
+|+.+.... ..+++.+........++.+++.++.++++.+..+.....
T Consensus 113 ~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 113 ADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 999864321 112222111111467899999999998887766655433
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.15 E-value=2.1e-10 Score=130.91 Aligned_cols=154 Identities=16% Similarity=0.261 Sum_probs=92.4
Q ss_pred ccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
....|.|+|+|+.++|||||+++|.+..+.....+..|..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~---------------------------------------- 326 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQH---------------------------------------- 326 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeee----------------------------------------
Confidence 4578999999999999999999998876521111111100
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
+. ... +... ...++||||||.. .+..+...+++.+|++|||+. +.... ..
T Consensus 327 ----------ig--a~~--v~~~-~~~ItfiDTPGhe-------------~F~~m~~rga~~aDiaILVVd-AddGv-~~ 376 (787)
T PRK05306 327 ----------IG--AYQ--VETN-GGKITFLDTPGHE-------------AFTAMRARGAQVTDIVVLVVA-ADDGV-MP 376 (787)
T ss_pred ----------cc--EEE--EEEC-CEEEEEEECCCCc-------------cchhHHHhhhhhCCEEEEEEE-CCCCC-CH
Confidence 00 011 1111 3568999999973 234566678888999888774 44332 23
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhC-ccc----ccCCCeEEEEcCChhhhccCCCH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEG-RSY----RLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~-~~~~~~~~-~~~----~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
.....++.....+.|+|+|+||+|+..... .....+.. ... .....++++++.++.+++++++.
T Consensus 377 qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~ 446 (787)
T PRK05306 377 QTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEA 446 (787)
T ss_pred hHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHh
Confidence 333344455556789999999999964321 11111111 111 11245788888887777655543
No 190
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.15 E-value=9e-10 Score=106.99 Aligned_cols=100 Identities=17% Similarity=0.067 Sum_probs=61.7
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhC-------------
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVD------------- 204 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d------------- 204 (599)
..+.||||+|. +.+..+...|+++++++|+|.+..+.+- ....|+..+....
T Consensus 54 ~~l~IwDtaG~-------------e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 54 FFVELWDVGGS-------------ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred EEEEEEecCCc-------------hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 35789999997 4557788889999999999877655421 1234544444321
Q ss_pred ------CCCCceEEEeccCCCCCCCCc-HHHHH---hCcccccCCCeEEEEcCChhhh
Q 007538 205 ------PTGERTFGVLTKLDLMDKGTN-ALDVL---EGRSYRLQHPWVGIVNRSQADI 252 (599)
Q Consensus 205 ------~~g~rti~VltK~Dl~~~~~~-~~~~~---~~~~~~l~~g~~~v~~~s~~~i 252 (599)
+...|+|+|.||.|+.++... ....+ ......++...+.+.|.....+
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLL 178 (202)
T ss_pred cccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccc
Confidence 235799999999999765321 11111 1112345566666666654433
No 191
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.14 E-value=8.5e-11 Score=116.87 Aligned_cols=158 Identities=20% Similarity=0.299 Sum_probs=95.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..+-|.+||-||||||||||||+...---..+.++|-.| ++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P---~i------------------------------------ 235 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRP---HI------------------------------------ 235 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeecc---cc------------------------------------
Confidence 445688999999999999999998753223455666666 11
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc-c-cccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-D-IATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~-d-~~~~ 194 (599)
| .+...+..++++-|+||++..+..+ +.+---..+.|++++.+++||+-++. + -..+
T Consensus 236 ---G------------~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~ 294 (366)
T KOG1489|consen 236 ---G------------TVNYDDFSQITVADIPGIIEGAHMN------KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQ 294 (366)
T ss_pred ---c------------eeeccccceeEeccCcccccccccc------CcccHHHHHHHHhhceEEEEEECCCcccCCHHH
Confidence 1 1233344559999999999977543 22333345667788876555544332 1 1122
Q ss_pred HHHHHHHHhC-----CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCC-eEEEEcCChhhhccCCC
Q 007538 195 DAMKLAREVD-----PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNID 257 (599)
Q Consensus 195 ~~l~la~~~d-----~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g-~~~v~~~s~~~i~~~~~ 257 (599)
....+..++. -...+.++|+||+|+.+...+. +......+..+ .++|++++++++..++.
T Consensus 295 ~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~pvsA~~~egl~~ll~ 360 (366)
T KOG1489|consen 295 QLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVVPVSAKSGEGLEELLN 360 (366)
T ss_pred HHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEEEeeeccccchHHHHH
Confidence 2222333332 1246799999999997433222 22223344444 78999999877655443
No 192
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.14 E-value=3.6e-10 Score=110.14 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++||||||. +.+...+..++..+|+++++++...... .+.+.+..+... ...++++|+||+
T Consensus 83 ~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEch
Confidence 57899999995 3344455666778899888776543222 122333333322 224789999999
Q ss_pred CCCCCCCc--HHHHHhCcc---cccCCCeEEEEcCChhhhccCCCHHH
Q 007538 218 DLMDKGTN--ALDVLEGRS---YRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 218 Dl~~~~~~--~~~~~~~~~---~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
|+.+.... ..+.++... ......++.+++.++.++++++..+.
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~ 195 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIV 195 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99753211 111111111 11245688999999888876665444
No 193
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.13 E-value=1.4e-09 Score=116.01 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=66.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|++||.+|+|||||+|+|++..+...+...||+-|+.-........ +.. .+ +..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~----------~~~----------r~----~~~ 57 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVEC----------PCK----------EL----GVK 57 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCC----------chh----------hh----hhh
Confidence 479999999999999999999998755567788888854322110000 000 00 001
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a 187 (599)
....++.. ..+.....++||||||+......+ ..+.+...+.++++|+++++|...
T Consensus 58 ~~~~~~~~-------~~~~~~~~i~i~D~aGl~~ga~~g------~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 58 CNPRNGKC-------IDGTRFIPVELIDVAGLVPGAHEG------RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hccccccc-------cCCcceeeEEEEEcCCcCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 11000000 001112458899999998754332 234444555689999998887654
No 194
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.13 E-value=1.3e-09 Score=112.74 Aligned_cols=110 Identities=19% Similarity=0.201 Sum_probs=66.4
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcC
Q 007538 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTG 120 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 120 (599)
|++||.+|+|||||+|+|++..+-+.....||+-|+.-...-.... +..+ .+..+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~----------~~~r--------------~~~~~~ 56 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVEC----------PCKE--------------LGVSCN 56 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCC----------Cchh--------------hhhhhc
Confidence 5899999999999999999998755666778888854322111000 0000 000000
Q ss_pred CCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007538 121 KTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (599)
Q Consensus 121 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a 187 (599)
...+. .+.+.....+.||||||+...+..+ ..+.+....+++++|++++|+...
T Consensus 57 ~~~~~-------~~~~~~~v~i~l~D~aGlv~ga~~~------~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 57 PRYGK-------CIDGKRYVPVELIDVAGLVPGAHEG------KGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ccccc-------cccCcCcceEEEEECCCCCCCccch------hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 00000 0112223469999999997654321 345556677899999998887654
No 195
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.13 E-value=5.2e-10 Score=114.01 Aligned_cols=137 Identities=17% Similarity=0.266 Sum_probs=76.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc-cccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T-r~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
+|+|||..|+|||||+|+|++..+.+.+..... ..+ .
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~-------~----------------------------------- 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH-------I----------------------------------- 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc-------c-----------------------------------
Confidence 799999999999999999999987544322110 000 0
Q ss_pred cCCCCCcCCccEEEEEecC-CCCCcEEEeCCCCCccCCC-CCCccHHHHHHHHHHH------------hhc--CCCeEEE
Q 007538 119 TGKTKQISPIPIHLSIYSP-NVVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRS------------YVE--KPNSVIL 182 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~-~~~~ltlvDtPGi~~~~~~-~q~~~~~~~i~~~~~~------------yi~--~~~~iIL 182 (599)
. ....-......+... ....+++|||||+.+.... .+-+.+.+.+.+.... ++. +.+++++
T Consensus 44 -~--~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly 120 (276)
T cd01850 44 -D--KTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLY 120 (276)
T ss_pred -C--CceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEE
Confidence 0 000000011112111 1246999999999764321 1111122222222222 222 2566666
Q ss_pred EEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 183 ~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
++.+....+ ....+.+++.+.. +.++|+|+||+|++...
T Consensus 121 ~i~~~~~~l-~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 121 FIEPTGHGL-KPLDIEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred EEeCCCCCC-CHHHHHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 666655455 3334667777764 78999999999998643
No 196
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.5e-10 Score=105.02 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=106.0
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..+.+++++|+.++|||+||-..++..|-|.-.. . +- .+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~-----T--iG--------vefg------------------------ 44 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL-----T--IG--------VEFG------------------------ 44 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccc-----e--ee--------eeec------------------------
Confidence 4677999999999999999999999998443321 0 00 0000
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--ccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~ 193 (599)
.-.+.|.+. ...|.+|||.|. +.+++++.+|.+.+...|||.+-.+.+ -..
T Consensus 45 -------------~r~~~id~k-~IKlqiwDtaGq-------------e~frsv~~syYr~a~GalLVydit~r~sF~hL 97 (216)
T KOG0098|consen 45 -------------ARMVTIDGK-QIKLQIWDTAGQ-------------ESFRSVTRSYYRGAAGALLVYDITRRESFNHL 97 (216)
T ss_pred -------------eeEEEEcCc-eEEEEEEecCCc-------------HHHHHHHHHHhccCcceEEEEEccchhhHHHH
Confidence 011122221 345889999998 788999999999999998987655443 334
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
..|+.=+++......-++++.||+|+....+...+.-+.....-++-|+.+++++++++++.+.
T Consensus 98 ~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 98 TSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred HHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 6677777777656678889999999987653222211111233456688888888888776553
No 197
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.12 E-value=1e-08 Score=114.83 Aligned_cols=450 Identities=24% Similarity=0.253 Sum_probs=315.5
Q ss_pred ceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHH
Q 007538 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM 169 (599)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~ 169 (599)
+..+.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...+++++......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (546)
T COG0699 3 EFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELL 82 (546)
T ss_pred cchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHH
Confidence 44556667777889999999999999888888889999999988888888899999999999999888888887777788
Q ss_pred HHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCCh
Q 007538 170 VRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ 249 (599)
Q Consensus 170 ~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~ 249 (599)
-..++...+++|......+.+..+......++..++ +.++.+.++.+.+.... .+.++..+.+..+
T Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 148 (546)
T COG0699 83 DLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDALE 148 (546)
T ss_pred HhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCchh
Confidence 888899899888888888888777777777777665 77888777766542211 5667777777888
Q ss_pred hhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007538 250 ADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIA 329 (599)
Q Consensus 250 ~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~lg~~~~ 329 (599)
.++............+..+|..++.+......++..++...++..+..++....|............ .++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-- 220 (546)
T COG0699 149 TDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN-- 220 (546)
T ss_pred HHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch--
Confidence 8888888888888889999999998888777899999999999999999988887766555444332 22221
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcchHhHhhhhHHHHhccCCccccCChhhHHHHHHhhcCCCCCCCCChH
Q 007538 330 VDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQ 409 (599)
Q Consensus 330 ~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~g~~p~~f~pe~ 409 (599)
.+......|...+....+| +++... ...+.....+....+.....+..+..|..|....
T Consensus 221 --------~~~~~~~~~~~~~~~~~~~-----~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (546)
T COG0699 221 --------EVLAVIQTLLKRLSELVRG-----ARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGLT 279 (546)
T ss_pred --------HHHHHHHHHHHHHHHHhcc-----chhhhh--------hcccchHHHhhhhhhHHHHHcccCCCcccccccc
Confidence 1334444554444433333 233322 0001111112333444555666777777777788
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007538 410 GYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEAS 489 (599)
Q Consensus 410 ~f~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~ 489 (599)
++...+..++..+..+..+|+..+...+.++....+. ......||.+...+...+.+...+........+...++.+..
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (546)
T COG0699 280 LLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEER 358 (546)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8899999999989999888888777777776333222 346789999999999999998888889999999999999999
Q ss_pred cccH---Hhhh--cchHHHhhh-----------C-CC---C-----CCC--------------------------CC---
Q 007538 490 YLTV---EFFR--KLPQEVEKA-----------G-NP---G-----NSG--------------------------NT--- 515 (599)
Q Consensus 490 yi~t---d~~~--~~~~~~~~~-----------~-~~---~-----~~~--------------------------~~--- 515 (599)
|+++ .+.. .+.....+. . .. . ... ..
T Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
T COG0699 359 YINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLDA 438 (546)
T ss_pred HHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccchh
Confidence 9874 1111 000000000 0 00 0 000 00
Q ss_pred --C----------CCcccCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHH
Q 007538 516 --A----------SQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEVLSRS 583 (599)
Q Consensus 516 --~----------~~~~~~~~~~~~~~i~~~l~aYf~Iv~k~i~D~VPkaI~~~lV~~~~~~lq~~L~~~L~~~~~~~~l 583 (599)
. ...... .....+.+..++.+| .++...+.|.++++++..+.+..+...+......++.......+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 516 (546)
T COG0699 439 LLATLGEALRRLTGLLPER-KTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQLEDEL 516 (546)
T ss_pred hhccchHHHHHhhcccchh-hhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011 111235668999999 99999999999999999997777776666666666655554444
Q ss_pred HH
Q 007538 584 LS 585 (599)
Q Consensus 584 l~ 585 (599)
..
T Consensus 517 ~~ 518 (546)
T COG0699 517 LR 518 (546)
T ss_pred HH
Confidence 43
No 198
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.9e-10 Score=101.47 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=87.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-..+|.|+|+.++||+|++-+..|..|-| ..++-+.+...
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~---afvsTvGidFK------------------------------------- 59 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTS---AFVSTVGIDFK------------------------------------- 59 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhcccccc---ceeeeeeeeEE-------------------------------------
Confidence 34589999999999999999999998833 11111111111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~~ 194 (599)
-+.| ..+....+|.+|||.|. +..+.++..|++.+.++||+.+..|.. .+.+
T Consensus 60 ----------vKTv---yr~~kRiklQiwDTagq-------------EryrtiTTayyRgamgfiLmyDitNeeSf~svq 113 (193)
T KOG0093|consen 60 ----------VKTV---YRSDKRIKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQ 113 (193)
T ss_pred ----------EeEe---eecccEEEEEEEecccc-------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHH
Confidence 0100 11223367899999998 667899999999999999998877753 2335
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~ 224 (599)
+|....+.+-....++|+|.||||+-++..
T Consensus 114 dw~tqIktysw~naqvilvgnKCDmd~eRv 143 (193)
T KOG0093|consen 114 DWITQIKTYSWDNAQVILVGNKCDMDSERV 143 (193)
T ss_pred HHHHHheeeeccCceEEEEecccCCcccee
Confidence 666666767677899999999999977653
No 199
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.08 E-value=5.4e-10 Score=108.13 Aligned_cols=103 Identities=20% Similarity=0.124 Sum_probs=62.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH--HHHHHHHHhCCCCCceEEEec
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DAMKLAREVDPTGERTFGVLT 215 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~~--~~l~la~~~d~~g~rti~Vlt 215 (599)
...|.||||||... .+...|+++++++||+.+..+.. +..- .|+..++...+ +.++++|.|
T Consensus 65 ~v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgN 128 (195)
T cd01873 65 SVSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGC 128 (195)
T ss_pred EEEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 35689999999732 12345889999998887655432 2111 24444544443 579999999
Q ss_pred cCCCCCCCC-----------------c--HHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 216 KLDLMDKGT-----------------N--ALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 216 K~Dl~~~~~-----------------~--~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
|+|+.+... . ..+..+......+.+|+.+++.++.++++.+.
T Consensus 129 K~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~ 189 (195)
T cd01873 129 KLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFD 189 (195)
T ss_pred chhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHH
Confidence 999864210 0 01111111233455788888888877766554
No 200
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.07 E-value=5.9e-10 Score=125.27 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=65.1
Q ss_pred CCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEec
Q 007538 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (599)
Q Consensus 137 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~r-ti~Vlt 215 (599)
++...++||||||. +.+...+..++..+|+++|||+ ++.++.. ...+.+..+...+.+ .|+|+|
T Consensus 48 ~~g~~i~~IDtPGh-------------e~fi~~m~~g~~~~D~~lLVVd-a~eg~~~-qT~ehl~il~~lgi~~iIVVlN 112 (614)
T PRK10512 48 PDGRVLGFIDVPGH-------------EKFLSNMLAGVGGIDHALLVVA-CDDGVMA-QTREHLAILQLTGNPMLTVALT 112 (614)
T ss_pred CCCcEEEEEECCCH-------------HHHHHHHHHHhhcCCEEEEEEE-CCCCCcH-HHHHHHHHHHHcCCCeEEEEEE
Confidence 34456899999997 2333334556788999887664 5544322 222222333333444 579999
Q ss_pred cCCCCCCCC--cHHHHHhCcc--ccc-CCCeEEEEcCChhhhccCCCHHHHH
Q 007538 216 KLDLMDKGT--NALDVLEGRS--YRL-QHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 216 K~Dl~~~~~--~~~~~~~~~~--~~l-~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
|+|+.++.. ...+.+.... ..+ ..++++|++.++.++++++..+...
T Consensus 113 KiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 113 KADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 999986431 1111111111 111 2568999999999988777666544
No 201
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.07 E-value=6.4e-10 Score=107.51 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=46.4
Q ss_pred CCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEec
Q 007538 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (599)
Q Consensus 137 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~r-ti~Vlt 215 (599)
.....++|+||||.. .+...+...+..+|+++++|+ +..+. .......++.+...+.+ .|+|+|
T Consensus 62 ~~~~~i~~iDtPG~~-------------~~~~~~~~~~~~~D~~ilVvd-a~~g~-~~~~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 62 TANRHYAHVDCPGHA-------------DYIKNMITGAAQMDGAILVVS-ATDGP-MPQTREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred CCCeEEEEEECcCHH-------------HHHHHHHHHhhhCCEEEEEEE-CCCCC-cHHHHHHHHHHHHcCCCcEEEEEe
Confidence 345679999999972 223334556778999877665 44444 23333445555555665 789999
Q ss_pred cCCCCCC
Q 007538 216 KLDLMDK 222 (599)
Q Consensus 216 K~Dl~~~ 222 (599)
|+|+.+.
T Consensus 127 K~D~~~~ 133 (195)
T cd01884 127 KADMVDD 133 (195)
T ss_pred CCCCCCc
Confidence 9999753
No 202
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.06 E-value=5.9e-10 Score=107.10 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=61.3
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc--HHHHHHHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT--SDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~--~~~l~la~~~d~~g~rti~VltK 216 (599)
..+.+|||||.... ..+...+++.+++++++.+..+.+. .. ..|+..++...+ ..++++|.||
T Consensus 49 ~~l~i~Dt~g~~~~-------------~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK 114 (187)
T cd04129 49 VQLALWDTAGQEEY-------------ERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLK 114 (187)
T ss_pred EEEEEEECCCChhc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 45789999997331 1122236688898887765443321 11 134455544444 4899999999
Q ss_pred CCCCCCCCc--------H--HHHHhCcccccC-CCeEEEEcCChhhhccCCCHHH
Q 007538 217 LDLMDKGTN--------A--LDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 217 ~Dl~~~~~~--------~--~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+|+.+.... . .+.........+ .+|+.+++.++.++++.+..+.
T Consensus 115 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 115 KDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred hhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHH
Confidence 998642110 0 010111112233 3688888888888877665544
No 203
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.06 E-value=7.9e-10 Score=123.92 Aligned_cols=168 Identities=17% Similarity=0.231 Sum_probs=93.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
...|++||+.++|||||+++|+... +..++... +..+.|..+. ++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~---------------------~~~~~D~~~~--------Er 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREM---------------------REQVLDSMDL--------ER 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCccccc---------------------cccccCCChH--------HH
Confidence 4479999999999999999998753 22222110 0000111000 11
Q ss_pred hcCCCCCcCCccEEEEEe--cCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 118 VTGKTKQISPIPIHLSIY--SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~--~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
. .+..+....+.+... +.....++||||||.. .+...+..|++.+|++||+++. +.....+.
T Consensus 48 e--rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-------------dF~~~v~~~l~~aD~aILVvDa-t~g~~~qt 111 (595)
T TIGR01393 48 E--RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-------------DFSYEVSRSLAACEGALLLVDA-AQGIEAQT 111 (595)
T ss_pred h--cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEEEEecC-CCCCCHhH
Confidence 1 122333334444332 1223578999999983 3455677899999999887654 43332222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCcccccCC---CeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQH---PWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~ 260 (599)
. .........+.++|+|+||+|+.+...+ ..+.+. ..++. .++.+++.++.++++++..+.
T Consensus 112 ~-~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~---~~lg~~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 112 L-ANVYLALENDLEIIPVINKIDLPSADPERVKKEIE---EVIGLDASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred H-HHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHH---HHhCCCcceEEEeeccCCCCHHHHHHHHH
Confidence 1 1111122246789999999998643211 111111 11222 368888888888776655443
No 204
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.05 E-value=1.4e-09 Score=121.51 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl 219 (599)
+.++||||||. +.+..+...++..+|++||+++.. .++ .......+..+...+.++++|+||+|+
T Consensus 71 ~~i~~iDTPG~-------------e~f~~~~~~~~~~aD~~IlVvDa~-~g~-~~qt~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGH-------------EAFTNLRKRGGALADIAILVVDIN-EGF-QPQTIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCCh-------------HHHHHHHHHhHhhCCEEEEEEECC-CCC-CHhHHHHHHHHHHcCCCEEEEEECcCC
Confidence 45899999997 344556667888999988877543 333 122222333334457899999999998
Q ss_pred C
Q 007538 220 M 220 (599)
Q Consensus 220 ~ 220 (599)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 205
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.05 E-value=2.2e-09 Score=104.57 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCC-CeEEEEEecCCcccccHHHHHH----HH--HhCCCCCceE
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP-NSVILAISPANQDIATSDAMKL----AR--EVDPTGERTF 211 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~-~~iIL~v~~a~~d~~~~~~l~l----a~--~~d~~g~rti 211 (599)
...+.||||||. ..++.+...|++.+ +++|++++.....-...+...+ .. .....+.|++
T Consensus 47 ~~~~~l~D~pG~-------------~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvl 113 (203)
T cd04105 47 GKKFRLVDVPGH-------------PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVL 113 (203)
T ss_pred CceEEEEECCCC-------------HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEE
Confidence 356899999997 34566778889998 9998888766541111121111 11 1223578999
Q ss_pred EEeccCCCCCCC
Q 007538 212 GVLTKLDLMDKG 223 (599)
Q Consensus 212 ~VltK~Dl~~~~ 223 (599)
+|+||.|+....
T Consensus 114 iv~NK~Dl~~a~ 125 (203)
T cd04105 114 IACNKQDLFTAK 125 (203)
T ss_pred EEecchhhcccC
Confidence 999999997643
No 206
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.05 E-value=5.2e-10 Score=112.76 Aligned_cols=166 Identities=20% Similarity=0.245 Sum_probs=97.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
-|.+||-|||||||||++++..+---.++.++|-.| +|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~P---nL--------------------------------------- 198 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVP---NL--------------------------------------- 198 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccC---cc---------------------------------------
Confidence 467999999999999999998863233556677776 11
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l 197 (599)
| . +.......+++-|.||++..+..| ..+-.-..+.|.++..++.+++.+..+- ..++..
T Consensus 199 G--------v----V~~~~~~sfv~ADIPGLIEGAs~G------~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~ 260 (369)
T COG0536 199 G--------V----VRVDGGESFVVADIPGLIEGASEG------VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQ 260 (369)
T ss_pred c--------E----EEecCCCcEEEecCcccccccccC------CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHH
Confidence 1 1 111345679999999999988664 2222334566777887777776554432 122222
Q ss_pred HHHHHh---CC--CCCceEEEeccCCCCCCCCcHHHHHhCcccccCC--CeEEEEcCChhhhccCCCHHHHHHHHH
Q 007538 198 KLAREV---DP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH--PWVGIVNRSQADINRNIDMIVARRKER 266 (599)
Q Consensus 198 ~la~~~---d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~--g~~~v~~~s~~~i~~~~~~~~~~~~E~ 266 (599)
.+..++ .+ ..++.++|+||+|+....+....+.......... .|+ +++.+.++++.+.........+.
T Consensus 261 ~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 261 TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL-ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee-eehhcccCHHHHHHHHHHHHHHh
Confidence 222222 22 2688999999999665444332222211111111 122 77777666666555544444433
No 207
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.03 E-value=1.6e-09 Score=109.94 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=48.8
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....++||||||..+ +...+..+++.+|++|++|+ +.... ......+++.+...+.|.++++||+
T Consensus 62 ~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ailVVD-a~~g~-~~~t~~~~~~~~~~~~p~ivviNK~ 126 (270)
T cd01886 62 KDHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAVFD-AVAGV-EPQTETVWRQADRYNVPRIAFVNKM 126 (270)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHHcCEEEEEEE-CCCCC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 356799999999732 23346778999999887665 44444 2333445555556678999999999
Q ss_pred CCCC
Q 007538 218 DLMD 221 (599)
Q Consensus 218 Dl~~ 221 (599)
|+..
T Consensus 127 D~~~ 130 (270)
T cd01886 127 DRTG 130 (270)
T ss_pred CCCC
Confidence 9875
No 208
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.03 E-value=2.8e-09 Score=104.79 Aligned_cols=118 Identities=25% Similarity=0.359 Sum_probs=82.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccc--cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-+|+|+|+.|||||||++++.+..+ +.+..+ .+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 4899999999999999999999875 332221 112221100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc---cccc
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIAT 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~---d~~~ 193 (599)
........+.+|||+|. +.++.+...|...+++++++++.... +-..
T Consensus 48 -----------------~~~~~~~~~~~~Dt~gq-------------~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 48 -----------------EPYRRNIKLQLWDTAGQ-------------EEYRSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred -----------------EeCCCEEEEEeecCCCH-------------HHHHHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence 01111345889999998 67788999999999999988776552 2223
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~ 224 (599)
..+...++...+...++++|.||+|+.....
T Consensus 98 ~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 98 EEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 4555556666666789999999999987653
No 209
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.02 E-value=5e-10 Score=117.21 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEec
Q 007538 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (599)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (599)
..++..++.+.+..+..+.+...+..++++...+.+++.|||.||+||||++|-++-.+. .+|- +|
T Consensus 134 lgrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----evqp-Ya-------- 199 (620)
T KOG1490|consen 134 LGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----EVQP-YA-------- 199 (620)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----ccCC-cc--------
Confidence 345555555555555444443333346778888999999999999999999998887654 1110 11
Q ss_pred CCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHH
Q 007538 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (599)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~ 163 (599)
|+...+.+.-.......+.++|||||-+.+.+ ..
T Consensus 200 -----------------------------------------FTTksL~vGH~dykYlrwQViDTPGILD~plE-----dr 233 (620)
T KOG1490|consen 200 -----------------------------------------FTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE-----DR 233 (620)
T ss_pred -----------------------------------------cccchhhhhhhhhheeeeeecCCccccCcchh-----hh
Confidence 11222222222333467889999999875433 33
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCC--cccccHHHHHHHHHhCCC--CCceEEEeccCCCCCCC
Q 007538 164 EDIESMVRSYVEKPNSVILAISPAN--QDIATSDAMKLAREVDPT--GERTFGVLTKLDLMDKG 223 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~--~d~~~~~~l~la~~~d~~--g~rti~VltK~Dl~~~~ 223 (599)
..++-.+...+.+=.+.+|++++-+ -+....+.+++...+.|- .+++|+|+||+|.+...
T Consensus 234 N~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 234 NIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred hHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 4455445455555444556665433 234445556677777764 68999999999998654
No 210
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.02 E-value=2.8e-09 Score=116.61 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=78.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccc-cccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.+|+|||.+|+||||++|+|+|...+..+. ..+|....+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 379999999999999999999987654432 12332221111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcC--CCeEEEEEecCC---cccc
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPAN---QDIA 192 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~--~~~iIL~v~~a~---~d~~ 192 (599)
...+...+.+|||||+...... ....+.+...+..++.. +|++++ |+... .+..
T Consensus 161 -----------------~~idG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpDVVLl-V~RLd~~~~D~e 219 (763)
T TIGR00993 161 -----------------GLVQGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPDIVLY-VDRLDMQTRDSN 219 (763)
T ss_pred -----------------EEECCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCCEEEE-EEeCCCccccHH
Confidence 0112467899999999875322 22345566666677764 776554 44432 2222
Q ss_pred cHHHHHHHHHhCCC--CCceEEEeccCCCCCC
Q 007538 193 TSDAMKLAREVDPT--GERTFGVLTKLDLMDK 222 (599)
Q Consensus 193 ~~~~l~la~~~d~~--g~rti~VltK~Dl~~~ 222 (599)
...+++....+-.. -.++|+|+|+.|..++
T Consensus 220 D~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 220 DLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 23455555555443 3799999999999963
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.00 E-value=1.8e-09 Score=107.70 Aligned_cols=70 Identities=21% Similarity=0.237 Sum_probs=47.9
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....++||||||..+ +...+..+++.+|++|++++... ... .....+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDTPG~~~-------------f~~~~~~~l~~aD~~IlVvd~~~-g~~-~~~~~~~~~~~~~~~P~iivvNK~ 126 (237)
T cd04168 62 EDTKVNLIDTPGHMD-------------FIAEVERSLSVLDGAILVISAVE-GVQ-AQTRILWRLLRKLNIPTIIFVNKI 126 (237)
T ss_pred CCEEEEEEeCCCccc-------------hHHHHHHHHHHhCeEEEEEeCCC-CCC-HHHHHHHHHHHHcCCCEEEEEECc
Confidence 346799999999843 23456778899999988775443 332 222334444444578999999999
Q ss_pred CCCCC
Q 007538 218 DLMDK 222 (599)
Q Consensus 218 Dl~~~ 222 (599)
|+...
T Consensus 127 D~~~a 131 (237)
T cd04168 127 DRAGA 131 (237)
T ss_pred cccCC
Confidence 98743
No 212
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.00 E-value=4.1e-10 Score=103.51 Aligned_cols=161 Identities=14% Similarity=0.227 Sum_probs=103.4
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..|.+|++.|++|+|||||+|.++..+|. .
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~--------------------------------------------------~ 36 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFS--------------------------------------------------Q 36 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHH--------------------------------------------------H
Confidence 36779999999999999999999998871 0
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC-ccccc-
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN-QDIAT- 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~-~d~~~- 193 (599)
......+..|-.+.+.+. .....|.||||.|. +.++.+-..|.+.+||++|+..-.+ ..+.+
T Consensus 37 qykaTIgadFltKev~Vd---~~~vtlQiWDTAGQ-------------ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L 100 (210)
T KOG0394|consen 37 QYKATIGADFLTKEVQVD---DRSVTLQIWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVNNPKSFENL 100 (210)
T ss_pred HhccccchhheeeEEEEc---CeEEEEEEEecccH-------------HHhhhcccceecCCceEEEEeecCChhhhccH
Confidence 111122344555555532 33567899999998 7777887889999999988743222 11211
Q ss_pred HHHH-HHHHHh---CCCCCceEEEeccCCCCCCCCcH--HHHHhCc-ccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 194 SDAM-KLAREV---DPTGERTFGVLTKLDLMDKGTNA--LDVLEGR-SYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 194 ~~~l-~la~~~---d~~g~rti~VltK~Dl~~~~~~~--~~~~~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
..|. ++.... +|..-|.|++.||+|+-+..... .+..+.- ...-..+||.+++..+.++.+.+..+...
T Consensus 101 ~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 101 ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHH
Confidence 2222 244444 45667999999999996533211 1111100 11235789999999888777766555443
No 213
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.00 E-value=1.7e-09 Score=101.06 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=61.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HHHHHHHHHhC-CCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVD-PTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~~~l~la~~~d-~~g~rti~VltK 216 (599)
..+.||||+|.-. ..|.+.+|++++|.+..+.+ +.. ..++..+.... ....|+++|.||
T Consensus 47 ~~l~i~D~~g~~~------------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK 108 (158)
T cd04103 47 HLLLIRDEGGAPD------------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ 108 (158)
T ss_pred EEEEEEECCCCCc------------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence 4588999999821 23667899998887655543 111 23444444443 245799999999
Q ss_pred CCCCCCCC-cH-HHHHhCccccc-CCCeEEEEcCChhhhccCCCHH
Q 007538 217 LDLMDKGT-NA-LDVLEGRSYRL-QHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 217 ~Dl~~~~~-~~-~~~~~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.|+..... .. .+......... ...|+.+++.++.++++.+..+
T Consensus 109 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 109 DAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred HHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99853211 11 11111111122 3689999999999887766543
No 214
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.99 E-value=1.8e-09 Score=117.23 Aligned_cols=103 Identities=11% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc-cccc--HHHHHHHHHhCCCCCceEEEe
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~-d~~~--~~~l~la~~~d~~g~rti~Vl 214 (599)
+...++||||||..+ .+.. +...+..+|+++++++..+. .+.. .+.+.+++... ..+.++|+
T Consensus 82 ~~~~i~liDtpG~~~------------~~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRD------------FVKN-MITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCccc------------chhh-HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEE
Confidence 456899999999622 1122 23446789998887664431 2212 23333444332 14689999
Q ss_pred ccCCCCCCCCcH----HHHHhCcc--ccc---CCCeEEEEcCChhhhccC
Q 007538 215 TKLDLMDKGTNA----LDVLEGRS--YRL---QHPWVGIVNRSQADINRN 255 (599)
Q Consensus 215 tK~Dl~~~~~~~----~~~~~~~~--~~l---~~g~~~v~~~s~~~i~~~ 255 (599)
||+|+.+...+. .+.+.... ... ...++.+++.++.++.+.
T Consensus 147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred EccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 999997532211 11111111 111 245788999888877653
No 215
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.99 E-value=2.9e-09 Score=107.97 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=47.6
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....+.||||||.. .+...+..+++.+|++|+|++.. .... .....+.+.....+.|+++++||+
T Consensus 69 ~~~~i~liDTPG~~-------------df~~~~~~~l~~aD~~IlVvda~-~g~~-~~~~~i~~~~~~~~~P~iivvNK~ 133 (267)
T cd04169 69 RDCVINLLDTPGHE-------------DFSEDTYRTLTAVDSAVMVIDAA-KGVE-PQTRKLFEVCRLRGIPIITFINKL 133 (267)
T ss_pred CCEEEEEEECCCch-------------HHHHHHHHHHHHCCEEEEEEECC-CCcc-HHHHHHHHHHHhcCCCEEEEEECC
Confidence 45789999999973 23344667888999998876543 3332 222234444445578999999999
Q ss_pred CCCCC
Q 007538 218 DLMDK 222 (599)
Q Consensus 218 Dl~~~ 222 (599)
|+...
T Consensus 134 D~~~a 138 (267)
T cd04169 134 DREGR 138 (267)
T ss_pred ccCCC
Confidence 98654
No 216
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.98 E-value=9.6e-10 Score=98.83 Aligned_cols=161 Identities=21% Similarity=0.231 Sum_probs=105.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-.+++|||+.-+||||||..++...| |.=+ -||+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkf-aels-----dptv--------------------------------------- 41 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPTV--------------------------------------- 41 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCcc---------------------------------------
Confidence 345789999999999999999998776 2111 1100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+.+|-...| ++.......|.||||.|. +.++.++++|.++.-.++|+.+..|... .-.
T Consensus 42 -----gvdffarli--e~~pg~riklqlwdtagq-------------erfrsitksyyrnsvgvllvyditnr~sfehv~ 101 (213)
T KOG0091|consen 42 -----GVDFFARLI--ELRPGYRIKLQLWDTAGQ-------------ERFRSITKSYYRNSVGVLLVYDITNRESFEHVE 101 (213)
T ss_pred -----chHHHHHHH--hcCCCcEEEEEEeeccch-------------HHHHHHHHHHhhcccceEEEEeccchhhHHHHH
Confidence 000111111 122222456899999998 8899999999999988888776666421 123
Q ss_pred HHHHHHHHhC--CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREVD--PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~d--~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
.|+.-|+..- |...-..+|.+|+|+........+..+......++-|+.++++++.++++.++++.+.
T Consensus 102 ~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 102 NWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred HHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHH
Confidence 4555554433 5445556899999998654432333333345567789999999999998887776654
No 217
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.97 E-value=8e-10 Score=99.08 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=96.6
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
.-..+|.+||+.++||||||-+++...|-|-. +|..-
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~---~~tIG---------------------------------------- 45 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLH---PTTIG---------------------------------------- 45 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccC---Cceee----------------------------------------
Confidence 35679999999999999999999987662211 11111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
..| +.-.+.|.+. ...|.||||+|. +.++.++.+|.+.+..||||.+....|.-..-
T Consensus 46 -------vDF--kvk~m~vdg~-~~KlaiWDTAGq-------------ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL 102 (209)
T KOG0080|consen 46 -------VDF--KVKVMQVDGK-RLKLAIWDTAGQ-------------ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKL 102 (209)
T ss_pred -------eeE--EEEEEEEcCc-eEEEEEEeccch-------------HhhhccCHhHhccCceeEEEEEccchhhHHhH
Confidence 111 1122223332 467999999998 88899999999999999998765554421111
Q ss_pred HHHHHHHhCCC----CCceEEEeccCCCCCCCCcHHHHHhCcc--cccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 196 AMKLAREVDPT----GERTFGVLTKLDLMDKGTNALDVLEGRS--YRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 196 ~l~la~~~d~~----g~rti~VltK~Dl~~~~~~~~~~~~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
-.++++++.. ..-.++|.||+|.-.+.. .+--+|.. ...+.-|+..++++.+++..-+..+..
T Consensus 103 -d~W~~Eld~Ystn~diikmlVgNKiDkes~R~--V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 103 -DIWLKELDLYSTNPDIIKMLVGNKIDKESERV--VDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVE 171 (209)
T ss_pred -HHHHHHHHhhcCCccHhHhhhcccccchhccc--ccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHH
Confidence 1245555532 234578999999753321 11112222 233445777888877776655544333
No 218
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.96 E-value=4.4e-09 Score=118.12 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=94.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+...|++||+.++|||||+++|+... |..++... +..+.|..+. +
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~---------------------~~~~lD~~~~--------E 50 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM---------------------KAQVLDSMDL--------E 50 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc---------------------ccccccCchH--------H
Confidence 45579999999999999999998642 22221110 0011111110 1
Q ss_pred hhcCCCCCcCCccEEEEEec--CCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYS--PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~--~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
+. .+..+....+.+.... .....++||||||.. .+...+..+++.+|++||+++.. .....+
T Consensus 51 re--rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~-------------dF~~~v~~sl~~aD~aILVVDas-~gv~~q 114 (600)
T PRK05433 51 RE--RGITIKAQAVRLNYKAKDGETYILNLIDTPGHV-------------DFSYEVSRSLAACEGALLVVDAS-QGVEAQ 114 (600)
T ss_pred hh--cCCcccccEEEEEEEccCCCcEEEEEEECCCcH-------------HHHHHHHHHHHHCCEEEEEEECC-CCCCHH
Confidence 11 1222333344443321 123568999999983 34556778899999988877544 333222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCcccccCC---CeEEEEcCChhhhccCCCHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQH---PWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~ 260 (599)
. ..........+.++|+|+||+|+.+...+ ..+.+.. .++. .++.+++.++.++.++++.+.
T Consensus 115 t-~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~---~lg~~~~~vi~iSAktG~GI~~Ll~~I~ 180 (600)
T PRK05433 115 T-LANVYLALENDLEIIPVLNKIDLPAADPERVKQEIED---VIGIDASDAVLVSAKTGIGIEEVLEAIV 180 (600)
T ss_pred H-HHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHH---HhCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 2 22222223346789999999998643211 1111111 1222 378889988888876655544
No 219
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.96 E-value=5.7e-09 Score=106.24 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=47.9
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....++||||||.. .+...+..++..+|++++++.+.. .. ......+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDtPG~~-------------~f~~~~~~~l~~aD~~i~Vvd~~~-g~-~~~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 62 KGHKINLIDTPGYA-------------DFVGETRAALRAADAALVVVSAQS-GV-EVGTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred CCEEEEEEECcCHH-------------HHHHHHHHHHHHCCEEEEEEeCCC-CC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35679999999973 233456778889999887765543 32 2222334444555678999999999
Q ss_pred CCCCC
Q 007538 218 DLMDK 222 (599)
Q Consensus 218 Dl~~~ 222 (599)
|+...
T Consensus 127 D~~~~ 131 (268)
T cd04170 127 DRERA 131 (268)
T ss_pred ccCCC
Confidence 98754
No 220
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.95 E-value=1.3e-09 Score=96.37 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=83.3
Q ss_pred ccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
+..|.+..++|++++|||||+-.+....| -.+..+++-.-..++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkir----------------------------------- 48 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIR----------------------------------- 48 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEE-----------------------------------
Confidence 34677888999999999999999987654 222222221111111
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc--ccc
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIA 192 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~--d~~ 192 (599)
.+.|.+ ....|.||||.|. +.++.++..|.+.++.+|++.+-.|. ...
T Consensus 49 ----------------Tv~i~G-~~VkLqIwDtAGq-------------ErFrtitstyyrgthgv~vVYDVTn~ESF~N 98 (198)
T KOG0079|consen 49 ----------------TVDING-DRVKLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVYDVTNGESFNN 98 (198)
T ss_pred ----------------EeecCC-cEEEEEEeecccH-------------HHHHHHHHHHccCCceEEEEEECcchhhhHh
Confidence 112222 2356899999997 88999999999999999888655543 223
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
-..|++-++.--+ ..+-++|.||.|..++.
T Consensus 99 v~rWLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 99 VKRWLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHHHHhcCc-cccceecccCCCCccce
Confidence 3567766665444 46778999999997654
No 221
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.94 E-value=4.2e-09 Score=103.72 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=48.7
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...+.||||||..+ +...+..+++.+|+++|+++.. ... ......+++.....+.+.++|+||+|
T Consensus 72 ~~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~ilVvD~~-~g~-~~~t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVD-------------FSSEVTAALRLCDGALVVVDAV-EGV-CVQTETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccc-------------cHHHHHHHHHhcCeeEEEEECC-CCC-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 45689999999843 3456788899999998877544 333 33344455555556789999999999
Q ss_pred CC
Q 007538 219 LM 220 (599)
Q Consensus 219 l~ 220 (599)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 222
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.94 E-value=1.9e-09 Score=106.42 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=62.5
Q ss_pred cCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc------cc--ccHHH
Q 007538 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ------DI--ATSDA 196 (599)
Q Consensus 125 ~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~------d~--~~~~~ 196 (599)
++.+.....+. .....++||||||..+ +...+..++..+|++|+||+.... +. .+...
T Consensus 63 ~T~d~~~~~~~-~~~~~i~liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~ 128 (219)
T cd01883 63 VTIDVGLAKFE-TEKYRFTILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREH 128 (219)
T ss_pred cCeecceEEEe-eCCeEEEEEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHH
Confidence 44444333332 2457899999999722 223344567889999887765442 11 11222
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC---CCcH---HHHHhCcccc-----cCCCeEEEEcCChhhhc
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDK---GTNA---LDVLEGRSYR-----LQHPWVGIVNRSQADIN 253 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~---~~~~---~~~~~~~~~~-----l~~g~~~v~~~s~~~i~ 253 (599)
+.++.... ..++|+|+||+|+... .... .+.+...... ....++++++.++.++.
T Consensus 129 ~~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 129 ALLARTLG--VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHcC--CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 23333221 2688999999999842 1111 1111111111 13458899999988875
No 223
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.93 E-value=5.5e-09 Score=102.58 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...++||||||..+ +...+..++..+|+++++++.... . ......+.+.....+.+.++|+||+|
T Consensus 70 ~~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~~llVvD~~~~-~-~~~~~~~~~~~~~~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVN-------------FMDEVAAALRLSDGVVLVVDVVEG-V-TSNTERLIRHAILEGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcc-------------hHHHHHHHHHhCCEEEEEEECCCC-C-CHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 35689999999843 245567888999999887765433 2 12222333444445689999999999
Q ss_pred CC
Q 007538 219 LM 220 (599)
Q Consensus 219 l~ 220 (599)
+.
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 86
No 224
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4.2e-09 Score=99.26 Aligned_cols=155 Identities=12% Similarity=0.164 Sum_probs=101.2
Q ss_pred cccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHH
Q 007538 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (599)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (599)
-+..+.+||++|++++|||-||.+++.-+|-+ -++-++-+..
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~-----~SksTIGvef--------------------------------- 51 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSL-----ESKSTIGVEF--------------------------------- 51 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCc-----ccccceeEEE---------------------------------
Confidence 34688999999999999999999999888832 2222211111
Q ss_pred HHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--c
Q 007538 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--I 191 (599)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~ 191 (599)
....+ .|.+ ......||||.|. +..+.++..|.+.+...+|+.+-.... -
T Consensus 52 ------------~t~t~--~vd~-k~vkaqIWDTAGQ-------------ERyrAitSaYYrgAvGAllVYDITr~~Tfe 103 (222)
T KOG0087|consen 52 ------------ATRTV--NVDG-KTVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITRRQTFE 103 (222)
T ss_pred ------------Eeece--eecC-cEEEEeeecccch-------------hhhccccchhhcccceeEEEEechhHHHHH
Confidence 01111 1212 2345689999998 778899999999999998887654421 1
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhcc
Q 007538 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (599)
Q Consensus 192 ~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~ 254 (599)
....|++-++.......++++|.||+||........+..+......++.|+.+++..+.+++.
T Consensus 104 nv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 104 NVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 345677777777767899999999999976333222222222233445666666665554433
No 225
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.90 E-value=4.5e-09 Score=99.91 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=90.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
--+|+++|.++|||||+++.|.+..+. +-.||
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~-------~~~pT----------------------------------------- 45 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEIS-------ETIPT----------------------------------------- 45 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEE-------EEEEE-----------------------------------------
T ss_pred EEEEEEECCCccchHHHHHHhhhcccc-------ccCcc-----------------------------------------
Confidence 448999999999999999999976541 11120
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l 197 (599)
.++.-.. +.. ....++++|++|-. .++.+...|+++++++|+||+.++.+- -.++.
T Consensus 46 -----~g~~~~~----i~~-~~~~~~~~d~gG~~-------------~~~~~w~~y~~~~~~iIfVvDssd~~~-l~e~~ 101 (175)
T PF00025_consen 46 -----IGFNIEE----IKY-KGYSLTIWDLGGQE-------------SFRPLWKSYFQNADGIIFVVDSSDPER-LQEAK 101 (175)
T ss_dssp -----SSEEEEE----EEE-TTEEEEEEEESSSG-------------GGGGGGGGGHTTESEEEEEEETTGGGG-HHHHH
T ss_pred -----cccccce----eee-CcEEEEEEeccccc-------------cccccceeeccccceeEEEEeccccee-ecccc
Confidence 0111111 111 34578999999973 235567789999999999887765432 23333
Q ss_pred HHHHH-hC---CCCCceEEEeccCCCCCCCC--cHHHHHhCcccccCCC--eEEEEcCChhhhccCCCHH
Q 007538 198 KLARE-VD---PTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHP--WVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 198 ~la~~-~d---~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l~~g--~~~v~~~s~~~i~~~~~~~ 259 (599)
..... +. -.+.|+++++||.|+.+.-. +..+.+.-....-+.. .+.+++.+++++.+.+..+
T Consensus 102 ~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 102 EELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred cchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 32222 22 24689999999999876433 1222222111111233 4556777777776655443
No 226
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.89 E-value=5.2e-09 Score=105.87 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=63.4
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcC
Q 007538 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTG 120 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 120 (599)
|++||.||||||||+|+|+|.+.-+.+...||+-|..-...-. + .. ++.+.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~-d-------------~r---~~~l~~----------- 52 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVP-D-------------ER---LDKLAE----------- 52 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEec-c-------------ch---hhhHHH-----------
Confidence 5799999999999999999998756667788888844332110 0 00 000000
Q ss_pred CCCCcCCccEEEEEecCC---CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007538 121 KTKQISPIPIHLSIYSPN---VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (599)
Q Consensus 121 ~~~~~s~~~i~l~i~~~~---~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~ 186 (599)
++.|. ...+.|+|+||+......+ +.+.+.....++++|++++||..
T Consensus 53 -------------~~~~~k~~~~~i~lvD~pGl~~~a~~~------~glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 53 -------------IVKPKKIVPATIEFVDIAGLVKGASKG------EGLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred -------------HhCCceeeeeEEEEEECCCcCCCCchh------hHHHHHHHHHHHhCCEEEEEEeC
Confidence 01110 2358999999998754332 34445566778899998777653
No 227
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=6.9e-09 Score=92.22 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=104.1
Q ss_pred ccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHH
Q 007538 33 SLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (599)
Q Consensus 33 ~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (599)
..|..|.+++|+|+.++|||.||..++...|- -++.
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfk-Ddss------------------------------------------- 39 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFK-DDSS------------------------------------------- 39 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhc-cccc-------------------------------------------
Confidence 45678999999999999999999999987761 0000
Q ss_pred HHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-
Q 007538 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI- 191 (599)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~- 191 (599)
...+..|-...|.+. .....|.||||.|. +.++..+++|.+.+-..+||.+..+.|.
T Consensus 40 ------HTiGveFgSrIinVG---gK~vKLQIWDTAGQ-------------ErFRSVtRsYYRGAAGAlLVYD~Tsrdsf 97 (214)
T KOG0086|consen 40 ------HTIGVEFGSRIVNVG---GKTVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVYDITSRDSF 97 (214)
T ss_pred ------ceeeeeecceeeeec---CcEEEEEEeecccH-------------HHHHHHHHHHhccccceEEEEeccchhhH
Confidence 001122333333322 23457899999998 8899999999999988888877666553
Q ss_pred -ccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhcc
Q 007538 192 -ATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (599)
Q Consensus 192 -~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~ 254 (599)
+...|+.-++.+.+...-+|++.||-|+-..................+-++..++.+++++++
T Consensus 98 naLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 98 NALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 345678888888888888889999999976543211101101112223566677777666544
No 228
>PTZ00258 GTP-binding protein; Provisional
Probab=98.88 E-value=9.2e-09 Score=108.63 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=68.4
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
.+-.+|++||.||+|||||+|+|+|..........||+-|..-.+...+. .+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~--------------r~-------------- 70 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDE--------------RF-------------- 70 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccc--------------hh--------------
Confidence 45669999999999999999999999876666778898885433211100 00
Q ss_pred hhhcCCCCCcCCccEEEEEecC---CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007538 116 DRVTGKTKQISPIPIHLSIYSP---NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~---~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~ 186 (599)
+.+. ++..| ...++.|+||||+...... .+.+.+.....++++|+++++|..
T Consensus 71 ~~l~-------------~~~~~~~~~~aqi~lvDtpGLv~ga~~------g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 71 DWLC-------------KHFKPKSIVPAQLDITDIAGLVKGASE------GEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred hHHH-------------HHcCCcccCCCCeEEEECCCcCcCCcc------hhHHHHHHHHHHHHCCEEEEEEeC
Confidence 0000 01111 1246899999999875433 134445566778899999887764
No 229
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.87 E-value=2.1e-08 Score=98.54 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=62.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.+|||||. +....+...|+..++++|++++..+... ....++....... ...++++|.||+
T Consensus 58 i~i~~~Dt~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~ 123 (215)
T PTZ00132 58 ICFNVWDTAGQ-------------EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKV 123 (215)
T ss_pred EEEEEEECCCc-------------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 56789999996 2334556678888998887765443211 0112332233232 357888999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
|+.+..... +... .....+..|+.+++.++.++++.+..+.+
T Consensus 124 Dl~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 124 DVKDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred cCccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 986532211 1111 11223467889999998887665544443
No 230
>CHL00071 tufA elongation factor Tu
Probab=98.86 E-value=1.1e-08 Score=110.47 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=46.2
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEecc
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~r-ti~VltK 216 (599)
+...++|+||||.. +.+..+ ...+..+|+++|+++ +...+ .......+..+...+.+ .|+|+||
T Consensus 73 ~~~~~~~iDtPGh~------------~~~~~~-~~~~~~~D~~ilVvd-a~~g~-~~qt~~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 73 ENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVVS-AADGP-MPQTKEHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred CCeEEEEEECCChH------------HHHHHH-HHHHHhCCEEEEEEE-CCCCC-cHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 45678999999951 333444 445678998877665 44444 23333444555555667 7789999
Q ss_pred CCCCCCC
Q 007538 217 LDLMDKG 223 (599)
Q Consensus 217 ~Dl~~~~ 223 (599)
+|+.+..
T Consensus 138 ~D~~~~~ 144 (409)
T CHL00071 138 EDQVDDE 144 (409)
T ss_pred cCCCCHH
Confidence 9998643
No 231
>PLN00023 GTP-binding protein; Provisional
Probab=98.86 E-value=9.9e-09 Score=105.11 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=49.0
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCC------------
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDP------------ 205 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~------------ 205 (599)
..+.||||+|. +.++.+...|+++++++|+|++..+... ....|++.+.....
T Consensus 83 v~LqIWDTAGq-------------ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~ 149 (334)
T PLN00023 83 FFVELWDVSGH-------------ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGG 149 (334)
T ss_pred EEEEEEECCCC-------------hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 35789999997 5667888899999999999877655321 12334444444321
Q ss_pred CCCceEEEeccCCCCCC
Q 007538 206 TGERTFGVLTKLDLMDK 222 (599)
Q Consensus 206 ~g~rti~VltK~Dl~~~ 222 (599)
...++++|.||+|+.+.
T Consensus 150 ~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 150 LPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCcEEEEEECcccccc
Confidence 13689999999999653
No 232
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.86 E-value=9.8e-09 Score=110.62 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=60.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cccHHHHHHHHHhCCCCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~~~~l~la~~~d~~g~rti~VltK 216 (599)
...++||||||. +.+...+..++..+|+++|+|+..... ..+.+.+.++.... ..+.++|+||
T Consensus 79 ~~~i~liDtPGh-------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 79 LRRVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred ccEEEEEECCCH-------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 357899999996 333344556677889988877644321 11233344443322 2568999999
Q ss_pred CCCCCCCCc--HHHHHhCcc---cccCCCeEEEEcCChhhhccCCCHH
Q 007538 217 LDLMDKGTN--ALDVLEGRS---YRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 217 ~Dl~~~~~~--~~~~~~~~~---~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+|+.+.... ..+.+.... ......++.+++.++.+++.++..+
T Consensus 144 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L 191 (406)
T TIGR03680 144 IDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAI 191 (406)
T ss_pred cccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHH
Confidence 999864321 111111111 1124567888888887765444433
No 233
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.85 E-value=5e-09 Score=92.51 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
+|+|+|+.+||||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999875
No 234
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.84 E-value=1.5e-08 Score=109.19 Aligned_cols=102 Identities=12% Similarity=0.195 Sum_probs=60.0
Q ss_pred CCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCceEEEe
Q 007538 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 137 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l~la~~~d~~g~rti~Vl 214 (599)
.....++||||||.. +.+.++. .-+..+|+++|+|+ +..++. +.+.+.+++... ..+.|+|+
T Consensus 77 ~~~~~~~liDtPGh~------------~f~~~~~-~~~~~aD~allVVd-a~~G~~~qt~~~~~~~~~~~--~~~iivvi 140 (406)
T TIGR02034 77 TDKRKFIVADTPGHE------------QYTRNMA-TGASTADLAVLLVD-ARKGVLEQTRRHSYIASLLG--IRHVVLAV 140 (406)
T ss_pred cCCeEEEEEeCCCHH------------HHHHHHH-HHHhhCCEEEEEEE-CCCCCccccHHHHHHHHHcC--CCcEEEEE
Confidence 345689999999962 2333443 45778999877665 544432 223344555443 34688999
Q ss_pred ccCCCCCCCCcHHHHHhCc------ccc-cCCCeEEEEcCChhhhcc
Q 007538 215 TKLDLMDKGTNALDVLEGR------SYR-LQHPWVGIVNRSQADINR 254 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~~~------~~~-l~~g~~~v~~~s~~~i~~ 254 (599)
||+|+.+...+..+.+... ... ....++++++.++.++..
T Consensus 141 NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 141 NKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred EecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9999985332221111110 111 134688999998877654
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.82 E-value=6.4e-08 Score=106.07 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=61.3
Q ss_pred cCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCceEEE
Q 007538 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGV 213 (599)
Q Consensus 136 ~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l~la~~~d~~g~rti~V 213 (599)
..+...++||||||.. +...+++.. +..+|+++|+|+ ++..+. +.+.+.++..+. -.+.|+|
T Consensus 103 ~~~~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD~allVVD-a~~G~~~qt~~~~~l~~~lg--~~~iIvv 166 (474)
T PRK05124 103 STEKRKFIIADTPGHE------------QYTRNMATG-ASTCDLAILLID-ARKGVLDQTRRHSFIATLLG--IKHLVVA 166 (474)
T ss_pred ccCCcEEEEEECCCcH------------HHHHHHHHH-HhhCCEEEEEEE-CCCCccccchHHHHHHHHhC--CCceEEE
Confidence 3445689999999951 233444444 588998877665 544432 223344555443 2478999
Q ss_pred eccCCCCCCCCcHHHHHhCc----cc----ccCCCeEEEEcCChhhhccC
Q 007538 214 LTKLDLMDKGTNALDVLEGR----SY----RLQHPWVGIVNRSQADINRN 255 (599)
Q Consensus 214 ltK~Dl~~~~~~~~~~~~~~----~~----~l~~g~~~v~~~s~~~i~~~ 255 (599)
+||+|+.+...+..+.+... .. .....++++++.++.++...
T Consensus 167 vNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 167 VNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred EEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 99999985332211111111 01 12356889999988877643
No 236
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.82 E-value=1.9e-08 Score=105.11 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=64.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|++||.||||||||+|+|+|.+........||+-|..-.+.-... . ++.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~-r----------------~~~l~---------- 55 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDP-R----------------LDKLA---------- 55 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccc-c----------------chhhH----------
Confidence 48999999999999999999998854455678888884322211100 0 00000
Q ss_pred cCCCCCcCCccEEEEEecCC---CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007538 119 TGKTKQISPIPIHLSIYSPN---VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~---~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~ 186 (599)
+++.|. ...+.|+|+||+...... .+.+.+-....++++|++++||..
T Consensus 56 --------------~~~~p~~~~~a~i~lvD~pGL~~~a~~------g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 56 --------------EIVKPKKIVPATIEFVDIAGLVKGASK------GEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred --------------HhcCCccccCceEEEEECCCCCCCCCh------HHHHHHHHHHHHHhCCEEEEEEeC
Confidence 011111 135899999999875433 234555667778899998887654
No 237
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.81 E-value=2.3e-08 Score=108.66 Aligned_cols=103 Identities=15% Similarity=0.299 Sum_probs=60.0
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cc--cHHHHHHHHHhCCCCCceEEE
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IA--TSDAMKLAREVDPTGERTFGV 213 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~--~~~~l~la~~~d~~g~rti~V 213 (599)
....++||||||. +.+...+..++..+|+++|+++..+.. .. +.+.+.+++... ..++|+|
T Consensus 83 ~~~~i~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGH-------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--INQLIVA 147 (426)
T ss_pred CCeEEEEEECCCH-------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--CCeEEEE
Confidence 3568999999995 222333444678899998877655432 11 122233444432 2578999
Q ss_pred eccCCCCCCCCcH--------HHHHhCccc-ccCCCeEEEEcCChhhhccC
Q 007538 214 LTKLDLMDKGTNA--------LDVLEGRSY-RLQHPWVGIVNRSQADINRN 255 (599)
Q Consensus 214 ltK~Dl~~~~~~~--------~~~~~~~~~-~l~~g~~~v~~~s~~~i~~~ 255 (599)
+||+|+.+...+. .+++..... .....|+.+++.++.++.+.
T Consensus 148 iNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 148 INKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred EEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 9999997532211 111211111 11356889999988877653
No 238
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.80 E-value=1.6e-08 Score=113.21 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=47.9
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....++||||||. ..+...+..+++.+|+++|+|+... +...+ ....++.+...+.+.|+|+||+
T Consensus 62 ~~~kinlIDTPGh-------------~DF~~ev~~~l~~aD~alLVVDa~~-G~~~q-T~~~l~~a~~~~ip~IVviNKi 126 (594)
T TIGR01394 62 NGTKINIVDTPGH-------------ADFGGEVERVLGMVDGVLLLVDASE-GPMPQ-TRFVLKKALELGLKPIVVINKI 126 (594)
T ss_pred CCEEEEEEECCCH-------------HHHHHHHHHHHHhCCEEEEEEeCCC-CCcHH-HHHHHHHHHHCCCCEEEEEECC
Confidence 3578999999997 3345567888999999988776543 33222 2223333334578899999999
Q ss_pred CCCCC
Q 007538 218 DLMDK 222 (599)
Q Consensus 218 Dl~~~ 222 (599)
|+.+.
T Consensus 127 D~~~a 131 (594)
T TIGR01394 127 DRPSA 131 (594)
T ss_pred CCCCc
Confidence 98653
No 239
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.79 E-value=7.5e-09 Score=103.67 Aligned_cols=89 Identities=26% Similarity=0.343 Sum_probs=63.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
--++++||.||+|||||||+|+|.+--+.+..++|..|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~------------------------------------------ 100 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP------------------------------------------ 100 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc------------------------------------------
Confidence 34899999999999999999999876555566666544
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a 187 (599)
+.| +...++..+.|+|+||++..+..|- .--..+.+-++++|.||+|++..
T Consensus 101 VPG-------------~l~Y~ga~IQild~Pgii~gas~g~------grG~~vlsv~R~ADlIiiVld~~ 151 (365)
T COG1163 101 VPG-------------MLEYKGAQIQLLDLPGIIEGASSGR------GRGRQVLSVARNADLIIIVLDVF 151 (365)
T ss_pred ccc-------------eEeecCceEEEEcCcccccCcccCC------CCcceeeeeeccCCEEEEEEecC
Confidence 112 3334467899999999998776542 11234556788999988876543
No 240
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.79 E-value=4.1e-08 Score=111.78 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCceEEEe
Q 007538 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 137 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l~la~~~d~~g~rti~Vl 214 (599)
.....++||||||.. +....++ ..+..+|+++|+|+ +...+. +.+.+.++.... ..+.|+|+
T Consensus 101 ~~~~~~~liDtPG~~------------~f~~~~~-~~~~~aD~~llVvd-a~~g~~~~t~e~~~~~~~~~--~~~iivvv 164 (632)
T PRK05506 101 TPKRKFIVADTPGHE------------QYTRNMV-TGASTADLAIILVD-ARKGVLTQTRRHSFIASLLG--IRHVVLAV 164 (632)
T ss_pred cCCceEEEEECCChH------------HHHHHHH-HHHHhCCEEEEEEE-CCCCccccCHHHHHHHHHhC--CCeEEEEE
Confidence 445789999999962 2233333 35778998877665 444332 233444555442 25788899
Q ss_pred ccCCCCCCCCcHHH-H---HhCccccc---CCCeEEEEcCChhhhcc
Q 007538 215 TKLDLMDKGTNALD-V---LEGRSYRL---QHPWVGIVNRSQADINR 254 (599)
Q Consensus 215 tK~Dl~~~~~~~~~-~---~~~~~~~l---~~g~~~v~~~s~~~i~~ 254 (599)
||+|+.+...+..+ + +......+ ..+++++++.++.++.+
T Consensus 165 NK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 165 NKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred EecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 99999853222111 1 11000111 23578899998887764
No 241
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.77 E-value=1e-07 Score=88.37 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=95.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-.+|+|+|.+++||||++.+++.... ++-.+..+..-.. +
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s~k--------~------------------------------ 49 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVSGK--------G------------------------------ 49 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhcccc-ceeeccccccccc--------c------------------------------
Confidence 567999999999999999999998752 2221111100000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.....+..+.-.+++ .+...+.|+||||. ++++-|..-+.+.+..+|++|+.+. +. +..+
T Consensus 50 ---kr~tTva~D~g~~~~--~~~~~v~LfgtPGq-------------~RF~fm~~~l~~ga~gaivlVDss~-~~-~~~a 109 (187)
T COG2229 50 ---KRPTTVAMDFGSIEL--DEDTGVHLFGTPGQ-------------ERFKFMWEILSRGAVGAIVLVDSSR-PI-TFHA 109 (187)
T ss_pred ---ccceeEeecccceEE--cCcceEEEecCCCc-------------HHHHHHHHHHhCCcceEEEEEecCC-Cc-chHH
Confidence 000111111112222 22357899999998 6678888889999998888776443 32 2255
Q ss_pred HHHHHHhCCCC-CceEEEeccCCCCCCCC--cHHHHHhCcccccCCCeEEEEcCChhhhc
Q 007538 197 MKLAREVDPTG-ERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (599)
Q Consensus 197 l~la~~~d~~g-~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l~~g~~~v~~~s~~~i~ 253 (599)
..+........ .|.++.+||.|+.+... .+.+.+.... +..+.++..++..++..
T Consensus 110 ~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--~~~~vi~~~a~e~~~~~ 167 (187)
T COG2229 110 EEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL--LSVPVIEIDATEGEGAR 167 (187)
T ss_pred HHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc--CCCceeeeecccchhHH
Confidence 55555555444 89999999999987643 2344443211 45677777776555443
No 242
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.75 E-value=1.3e-07 Score=98.64 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=84.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
.|+|||+-++||||++|++++.-++|--+..--|- --++++ .....
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~-------------------------------Ra~DEL---pqs~~ 64 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKE-------------------------------RAQDEL---PQSAA 64 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHh-------------------------------HHHhcc---CcCCC
Confidence 69999999999999999999996655332100000 000000 00011
Q ss_pred C------CCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHH----------------HHHHHHHHHhhc-C
Q 007538 120 G------KTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV----------------EDIESMVRSYVE-K 176 (599)
Q Consensus 120 g------~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~----------------~~i~~~~~~yi~-~ 176 (599)
| .-+-+..+.+.+.....-..++.||||+|+.....-|.-+... +..+--+++-|. +
T Consensus 65 GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dh 144 (492)
T TIGR02836 65 GKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEH 144 (492)
T ss_pred CCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhc
Confidence 1 0112223444444433334678999999998754443322111 111223677787 6
Q ss_pred CCeEEEEEecCC------cccccHHHHHHHHHhCCCCCceEEEeccCCCCC
Q 007538 177 PNSVILAISPAN------QDIATSDAMKLAREVDPTGERTFGVLTKLDLMD 221 (599)
Q Consensus 177 ~~~iIL~v~~a~------~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~ 221 (599)
++..|+++++++ .+. .....++..++...++|.++|+||.|-..
T Consensus 145 stIgivVtTDgsi~dI~Re~y-~~aEe~~i~eLk~~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 145 STIGVVVTTDGTITDIPREDY-VEAEERVIEELKELNKPFIILLNSTHPYH 194 (492)
T ss_pred CcEEEEEEcCCCccccccccc-hHHHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 776666554653 122 23345677888888999999999999543
No 243
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.74 E-value=5.6e-08 Score=100.91 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=58.3
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHH-hCCCCCceEEEecc
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLARE-VDPTGERTFGVLTK 216 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~-~d~~g~rti~VltK 216 (599)
...++.||||+|+... +.. ....+|.+++++.+...+ .++..+. +-. .--++|+||
T Consensus 147 ~g~d~viieT~Gv~qs------~~~----------i~~~aD~vlvv~~p~~gd-----~iq~~k~gi~E--~aDIiVVNK 203 (332)
T PRK09435 147 AGYDVILVETVGVGQS------ETA----------VAGMVDFFLLLQLPGAGD-----ELQGIKKGIME--LADLIVINK 203 (332)
T ss_pred cCCCEEEEECCCCccc------hhH----------HHHhCCEEEEEecCCchH-----HHHHHHhhhhh--hhheEEeeh
Confidence 3578999999999632 111 144589887766544322 1211111 111 112899999
Q ss_pred CCCCCCCC--cHHHHHhCcc---c----ccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 217 LDLMDKGT--NALDVLEGRS---Y----RLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 217 ~Dl~~~~~--~~~~~~~~~~---~----~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
+|+..... .....+.... . ....+++.+++.++.+++++.+.+.....
T Consensus 204 aDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99986442 1111111111 0 11236788999999998887776665433
No 244
>PRK12739 elongation factor G; Reviewed
Probab=98.74 E-value=4.9e-08 Score=112.09 Aligned_cols=134 Identities=13% Similarity=0.177 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
....|+|||..++|||||+|+|+...- ...+.. .... +..+.|+...+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g------~~~~~~------~v~~------------~~~~~D~~~~E-------- 54 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTG------KSHKIG------EVHD------------GAATMDWMEQE-------- 54 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCC------Cccccc------cccC------------CccccCCChhH--------
Confidence 466899999999999999999975321 000000 0000 01111211111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
+ ..+++-+.....+.. +...++||||||..+ +...+..+++.+|++|++|+ +..... ...
T Consensus 55 ~----~rgiti~~~~~~~~~-~~~~i~liDTPG~~~-------------f~~e~~~al~~~D~~ilVvD-a~~g~~-~qt 114 (691)
T PRK12739 55 Q----ERGITITSAATTCFW-KGHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAVFD-AVSGVE-PQS 114 (691)
T ss_pred h----hcCCCccceeEEEEE-CCEEEEEEcCCCHHH-------------HHHHHHHHHHHhCeEEEEEe-CCCCCC-HHH
Confidence 1 122333322222222 456899999999732 23357788899998877665 554543 333
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
..+++.+...+.+.|+++||+|+...
T Consensus 115 ~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 115 ETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 45666666678899999999999854
No 245
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.73 E-value=4.3e-08 Score=112.62 Aligned_cols=134 Identities=12% Similarity=0.191 Sum_probs=78.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+...|+|+|..++|||||+|+|++..- ...+ . ....+ +....|+... +
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~~~~-~-----~~~~~------------g~~~~D~~~~--------e 56 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------RIHK-I-----GEVHD------------GAATMDWMEQ--------E 56 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------Cccc-c-----ccccC------------CccccCCCHH--------H
Confidence 567899999999999999999986421 1111 0 00000 0011111111 1
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
+..| ++-+.....+.. ....++||||||..+ ....+..+++.+|+++++++ +..+. ....
T Consensus 57 ~~rg----iti~~~~~~~~~-~~~~i~liDTPG~~~-------------~~~~~~~~l~~~D~~ilVvd-a~~g~-~~~~ 116 (689)
T TIGR00484 57 KERG----ITITSAATTVFW-KGHRINIIDTPGHVD-------------FTVEVERSLRVLDGAVAVLD-AVGGV-QPQS 116 (689)
T ss_pred HhcC----CCEecceEEEEE-CCeEEEEEECCCCcc-------------hhHHHHHHHHHhCEEEEEEe-CCCCC-ChhH
Confidence 1112 222222222322 356899999999954 12246778889999888765 44443 2223
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
..+++.+...+.+.++|+||+|+...
T Consensus 117 ~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 117 ETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 34555556667899999999999854
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.73 E-value=9.1e-08 Score=105.85 Aligned_cols=138 Identities=17% Similarity=0.275 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
....|+|+|..+||||||+++|+... +..++...+ . ....+ .....|+...+.
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~v-~--~~~~~-----------~~~~~D~~~~E~------- 61 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGTV-K--GRKSG-----------RHATSDWMEMEK------- 61 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCcccccee-e--ccccC-----------ccccCCCcHHHH-------
Confidence 45689999999999999999997421 111221100 0 00000 000112221111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
..+..+....+.+. .+...++||||||.. .+...+..+++.+|++|+|++..+ +.. ...
T Consensus 62 ---~rgiSi~~~~~~~~---~~~~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlVvDa~~-gv~-~~t 120 (526)
T PRK00741 62 ---QRGISVTSSVMQFP---YRDCLINLLDTPGHE-------------DFSEDTYRTLTAVDSALMVIDAAK-GVE-PQT 120 (526)
T ss_pred ---hhCCceeeeeEEEE---ECCEEEEEEECCCch-------------hhHHHHHHHHHHCCEEEEEEecCC-CCC-HHH
Confidence 11122323333322 234679999999973 234456778889999988776543 332 223
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
..+.+.....+.|+++++||+|+...
T Consensus 121 ~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 121 RKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHHhcCCCEEEEEECCccccc
Confidence 34445555568899999999998753
No 247
>PRK12736 elongation factor Tu; Reviewed
Probab=98.73 E-value=7.3e-08 Score=103.48 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=43.5
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEecc
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~r-ti~VltK 216 (599)
+...++||||||.. +.+.++ ..-+..+|+++|+|+ +..++. ......+..+...|.+ .|+|+||
T Consensus 73 ~~~~i~~iDtPGh~------------~f~~~~-~~~~~~~d~~llVvd-~~~g~~-~~t~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 73 EKRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVVA-ATDGPM-PQTREHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred CCcEEEEEECCCHH------------HHHHHH-HHHHhhCCEEEEEEE-CCCCCc-hhHHHHHHHHHHcCCCEEEEEEEe
Confidence 45678999999951 333444 333567898877665 444432 2223334444444666 6789999
Q ss_pred CCCCCC
Q 007538 217 LDLMDK 222 (599)
Q Consensus 217 ~Dl~~~ 222 (599)
+|+.+.
T Consensus 138 ~D~~~~ 143 (394)
T PRK12736 138 VDLVDD 143 (394)
T ss_pred cCCcch
Confidence 999853
No 248
>PLN03126 Elongation factor Tu; Provisional
Probab=98.72 E-value=6.6e-08 Score=105.62 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=44.3
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEecc
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~r-ti~VltK 216 (599)
....++||||||.. +.+.++ ..-+..+|+++|+|+ +..+... ...+.+..+...|.+ .|+++||
T Consensus 142 ~~~~i~liDtPGh~------------~f~~~~-~~g~~~aD~ailVVd-a~~G~~~-qt~e~~~~~~~~gi~~iIvvvNK 206 (478)
T PLN03126 142 ENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVVS-GADGPMP-QTKEHILLAKQVGVPNMVVFLNK 206 (478)
T ss_pred CCcEEEEEECCCHH------------HHHHHH-HHHHhhCCEEEEEEE-CCCCCcH-HHHHHHHHHHHcCCCeEEEEEec
Confidence 45689999999972 233444 445568999877665 4444322 223333344444666 7889999
Q ss_pred CCCCCC
Q 007538 217 LDLMDK 222 (599)
Q Consensus 217 ~Dl~~~ 222 (599)
+|+.+.
T Consensus 207 ~Dl~~~ 212 (478)
T PLN03126 207 QDQVDD 212 (478)
T ss_pred ccccCH
Confidence 999863
No 249
>PLN03127 Elongation factor Tu; Provisional
Probab=98.72 E-value=3.8e-08 Score=106.89 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=49.9
Q ss_pred cCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhC
Q 007538 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVD 204 (599)
Q Consensus 125 ~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d 204 (599)
++-+....... .....++|+||||.. +.+.+++. -+..+|+++|+|+ ++... .....+.+..+.
T Consensus 110 iTi~~~~~~~~-~~~~~i~~iDtPGh~------------~f~~~~~~-g~~~aD~allVVd-a~~g~-~~qt~e~l~~~~ 173 (447)
T PLN03127 110 ITIATAHVEYE-TAKRHYAHVDCPGHA------------DYVKNMIT-GAAQMDGGILVVS-APDGP-MPQTKEHILLAR 173 (447)
T ss_pred ceeeeeEEEEc-CCCeEEEEEECCCcc------------chHHHHHH-HHhhCCEEEEEEE-CCCCC-chhHHHHHHHHH
Confidence 44444444333 344679999999973 23444444 3346998877665 55444 233344555555
Q ss_pred CCCCc-eEEEeccCCCCCC
Q 007538 205 PTGER-TFGVLTKLDLMDK 222 (599)
Q Consensus 205 ~~g~r-ti~VltK~Dl~~~ 222 (599)
..+.+ .|+|+||+|+++.
T Consensus 174 ~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 174 QVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HcCCCeEEEEEEeeccCCH
Confidence 55677 5789999999853
No 250
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.71 E-value=4.9e-08 Score=104.86 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=42.7
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceE-EEecc
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLTK 216 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti-~VltK 216 (599)
....++||||||.. +.+.++ ...+..+|+++|+++ +.... .....+.+..+...+.+.+ +|+||
T Consensus 73 ~~~~~~liDtpGh~------------~f~~~~-~~~~~~~D~~ilVvd-a~~g~-~~qt~e~l~~~~~~gi~~iIvvvNK 137 (394)
T TIGR00485 73 ENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVVS-ATDGP-MPQTREHILLARQVGVPYIVVFLNK 137 (394)
T ss_pred CCEEEEEEECCchH------------HHHHHH-HHHHhhCCEEEEEEE-CCCCC-cHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 34578999999972 222333 334567898877665 44433 2223334444444466655 68999
Q ss_pred CCCCCC
Q 007538 217 LDLMDK 222 (599)
Q Consensus 217 ~Dl~~~ 222 (599)
+|+.+.
T Consensus 138 ~Dl~~~ 143 (394)
T TIGR00485 138 CDMVDD 143 (394)
T ss_pred cccCCH
Confidence 999864
No 251
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.71 E-value=9.3e-08 Score=103.09 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=55.6
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cccHHHHHHHHHhCCCC-CceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATSDAMKLAREVDPTG-ERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~~~~l~la~~~d~~g-~rti~VltK 216 (599)
..++||||||. +.+...+...+..+|+++++++..... ..+.+.+.+++. .+ .+.++|+||
T Consensus 85 ~~i~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~---~~i~~iiVVlNK 148 (411)
T PRK04000 85 RRVSFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI---IGIKNIVIVQNK 148 (411)
T ss_pred cEEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH---cCCCcEEEEEEe
Confidence 56899999995 222222333445679887766544321 112233333332 33 468999999
Q ss_pred CCCCCCCCcH--HHHHhCcc---cccCCCeEEEEcCChhhhccCCCH
Q 007538 217 LDLMDKGTNA--LDVLEGRS---YRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 217 ~Dl~~~~~~~--~~~~~~~~---~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
+|+.+..... .+.+.... ......++.+++.++.++++++..
T Consensus 149 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~ 195 (411)
T PRK04000 149 IDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEA 195 (411)
T ss_pred eccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHH
Confidence 9998643211 11111111 112356788888887776544443
No 252
>PRK10218 GTP-binding protein; Provisional
Probab=98.70 E-value=9.7e-08 Score=106.95 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=47.4
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....+.||||||..+ +...+..+++.+|++||+++... +...+ ....++.+...+.+.|+|+||+
T Consensus 66 ~~~~inliDTPG~~d-------------f~~~v~~~l~~aDg~ILVVDa~~-G~~~q-t~~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 66 NDYRINIVDTPGHAD-------------FGGEVERVMSMVDSVLLVVDAFD-GPMPQ-TRFVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred CCEEEEEEECCCcch-------------hHHHHHHHHHhCCEEEEEEeccc-CccHH-HHHHHHHHHHcCCCEEEEEECc
Confidence 456799999999733 34456788999999988776543 32222 2223333344578899999999
Q ss_pred CCCCC
Q 007538 218 DLMDK 222 (599)
Q Consensus 218 Dl~~~ 222 (599)
|+...
T Consensus 131 D~~~a 135 (607)
T PRK10218 131 DRPGA 135 (607)
T ss_pred CCCCC
Confidence 98643
No 253
>PRK00007 elongation factor G; Reviewed
Probab=98.70 E-value=8.3e-08 Score=110.21 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=80.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+...|+|+|..++|||||+|+|+... |...+ +..... +..+.|+...+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~------g~~~~------~g~v~~------------~~~~~D~~~~E-------- 56 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYT------GVNHK------IGEVHD------------GAATMDWMEQE-------- 56 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhc------CCccc------cccccC------------CcccCCCCHHH--------
Confidence 56689999999999999999997421 00000 000000 01112222111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
+. .+++-+.....+.. ....++||||||..+ . ..-+...++.+|+++|+++ +..+. ....
T Consensus 57 ~~----rg~ti~~~~~~~~~-~~~~~~liDTPG~~~------------f-~~ev~~al~~~D~~vlVvd-a~~g~-~~qt 116 (693)
T PRK00007 57 QE----RGITITSAATTCFW-KDHRINIIDTPGHVD------------F-TIEVERSLRVLDGAVAVFD-AVGGV-EPQS 116 (693)
T ss_pred Hh----CCCCEeccEEEEEE-CCeEEEEEeCCCcHH------------H-HHHHHHHHHHcCEEEEEEE-CCCCc-chhh
Confidence 11 22333332333323 356899999999732 1 1236667788898877665 55555 3344
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
..+++.+...+.+.|+++||+|+.+..
T Consensus 117 ~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 117 ETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 556666777788999999999998643
No 254
>PRK12735 elongation factor Tu; Reviewed
Probab=98.70 E-value=9.3e-08 Score=102.73 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=44.2
Q ss_pred CCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceE-EEec
Q 007538 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLT 215 (599)
Q Consensus 137 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti-~Vlt 215 (599)
.+...++||||||.. +.+..+. .-+..+|+++|+++ +...... ...+.+..+...+.+.+ +|+|
T Consensus 72 ~~~~~i~~iDtPGh~------------~f~~~~~-~~~~~aD~~llVvd-a~~g~~~-qt~e~l~~~~~~gi~~iivvvN 136 (396)
T PRK12735 72 TANRHYAHVDCPGHA------------DYVKNMI-TGAAQMDGAILVVS-AADGPMP-QTREHILLARQVGVPYIVVFLN 136 (396)
T ss_pred CCCcEEEEEECCCHH------------HHHHHHH-hhhccCCEEEEEEE-CCCCCch-hHHHHHHHHHHcCCCeEEEEEE
Confidence 345678999999971 2333333 55678998877665 4433322 22334444445567755 6799
Q ss_pred cCCCCCC
Q 007538 216 KLDLMDK 222 (599)
Q Consensus 216 K~Dl~~~ 222 (599)
|+|+.+.
T Consensus 137 K~Dl~~~ 143 (396)
T PRK12735 137 KCDMVDD 143 (396)
T ss_pred ecCCcch
Confidence 9999853
No 255
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.69 E-value=3.8e-08 Score=85.05 Aligned_cols=134 Identities=20% Similarity=0.239 Sum_probs=78.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|++||..|+||+||.++|-|.+.+++.+..++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve----------------------------------------------- 35 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVE----------------------------------------------- 35 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceee-----------------------------------------------
Confidence 799999999999999999999998766553222
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 199 (599)
..++ -.|||||-.-.. ..+-.-.......++.|++ |..+|.....- -
T Consensus 36 --------------~~d~-----~~IDTPGEy~~~---------~~~Y~aL~tt~~dadvi~~-v~~and~~s~f----~ 82 (148)
T COG4917 36 --------------FNDK-----GDIDTPGEYFEH---------PRWYHALITTLQDADVIIY-VHAANDPESRF----P 82 (148)
T ss_pred --------------ccCc-----cccCCchhhhhh---------hHHHHHHHHHhhccceeee-eecccCccccC----C
Confidence 1111 258999975421 2222223344567887766 44555432111 1
Q ss_pred HHHhCCCCCceEEEeccCCCCCCCCcH---HHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 200 AREVDPTGERTFGVLTKLDLMDKGTNA---LDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 200 a~~~d~~g~rti~VltK~Dl~~~~~~~---~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
....++..+++|||+||.|+.... ++ ...+. ..-..+.|.++.....++++++.
T Consensus 83 p~f~~~~~k~vIgvVTK~DLaed~-dI~~~~~~L~---eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 83 PGFLDIGVKKVIGVVTKADLAEDA-DISLVKRWLR---EAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred cccccccccceEEEEecccccchH-hHHHHHHHHH---HcCCcceEEEeccCcccHHHHHH
Confidence 122344556799999999998522 21 12221 11134566666666665554443
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.69 E-value=9.9e-08 Score=105.56 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=46.9
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
+...+.||||||.. .+...+..+++.+|++|++++... .+.. ....+.+.....+.|+++++||+
T Consensus 78 ~~~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlVvDa~~-gv~~-~t~~l~~~~~~~~~PiivviNKi 142 (527)
T TIGR00503 78 RDCLVNLLDTPGHE-------------DFSEDTYRTLTAVDNCLMVIDAAK-GVET-RTRKLMEVTRLRDTPIFTFMNKL 142 (527)
T ss_pred CCeEEEEEECCChh-------------hHHHHHHHHHHhCCEEEEEEECCC-CCCH-HHHHHHHHHHhcCCCEEEEEECc
Confidence 45789999999982 233456678889999988776544 3322 22233333444578999999999
Q ss_pred CCCC
Q 007538 218 DLMD 221 (599)
Q Consensus 218 Dl~~ 221 (599)
|+..
T Consensus 143 D~~~ 146 (527)
T TIGR00503 143 DRDI 146 (527)
T ss_pred cccC
Confidence 9864
No 257
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=5.8e-08 Score=85.15 Aligned_cols=154 Identities=14% Similarity=0.203 Sum_probs=101.3
Q ss_pred ccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
|....+-+++|+.++|||.||..++...| ...||-.+-
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkf-------madcphtig----------------------------------- 45 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIG----------------------------------- 45 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccc-----------------------------------
Confidence 34567889999999999999999998876 344551111
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC--cccc
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN--QDIA 192 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~--~d~~ 192 (599)
..|-... +++.+. ...|.||||.|. +.++..+++|.+.+...+.+.+-.. .--.
T Consensus 46 --------vefgtri--ievsgq-kiklqiwdtagq-------------erfravtrsyyrgaagalmvyditrrstynh 101 (215)
T KOG0097|consen 46 --------VEFGTRI--IEVSGQ-KIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRRSTYNH 101 (215)
T ss_pred --------eecceeE--EEecCc-EEEEEEeecccH-------------HHHHHHHHHHhccccceeEEEEehhhhhhhh
Confidence 1111222 234343 356899999998 7889999999999887766544322 1223
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhcc
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~ 254 (599)
.+.|+.-++.+.....-++++.||.|+-+......+........-++-|...++.+++++++
T Consensus 102 lsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved 163 (215)
T KOG0097|consen 102 LSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED 163 (215)
T ss_pred HHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence 46777777777655666788899999976654222222222334456677778877776554
No 258
>PRK00049 elongation factor Tu; Reviewed
Probab=98.67 E-value=6.9e-08 Score=103.71 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=44.1
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceE-EEecc
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLTK 216 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti-~VltK 216 (599)
+...++|+||||.. +.+.++. ..+..+|+++++++ +.... .......+..+...+.+.+ +++||
T Consensus 73 ~~~~i~~iDtPG~~------------~f~~~~~-~~~~~aD~~llVVD-a~~g~-~~qt~~~~~~~~~~g~p~iiVvvNK 137 (396)
T PRK00049 73 EKRHYAHVDCPGHA------------DYVKNMI-TGAAQMDGAILVVS-AADGP-MPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCeEEEEEECCCHH------------HHHHHHH-hhhccCCEEEEEEE-CCCCC-chHHHHHHHHHHHcCCCEEEEEEee
Confidence 45679999999972 2333333 45678999877665 44443 2333334444444567765 68999
Q ss_pred CCCCC
Q 007538 217 LDLMD 221 (599)
Q Consensus 217 ~Dl~~ 221 (599)
+|+.+
T Consensus 138 ~D~~~ 142 (396)
T PRK00049 138 CDMVD 142 (396)
T ss_pred cCCcc
Confidence 99985
No 259
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.66 E-value=4.6e-08 Score=86.68 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=66.2
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---ccHHHHHHHHHhCCCCCceEEEe
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~---~~~~~l~la~~~d~~g~rti~Vl 214 (599)
+...+.+||+||. ..++.|...|.+..++|+.+|++|..+- +.++-..+...-.-.|.|.++..
T Consensus 63 gnvtiklwD~gGq-------------~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 63 GNVTIKLWDLGGQ-------------PRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred CceEEEEEecCCC-------------ccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 3567889999998 4568999999999999999988877542 12233333333334589999999
Q ss_pred ccCCCCCCCCcHHHHHh--Cc-c-cccCCCeEEEEcCChhhhcc
Q 007538 215 TKLDLMDKGTNALDVLE--GR-S-YRLQHPWVGIVNRSQADINR 254 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~--~~-~-~~l~~g~~~v~~~s~~~i~~ 254 (599)
||.|+.+.-. ..+++. |. . ..-..-.|.++++...+++.
T Consensus 130 nK~d~~~AL~-~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 130 NKIDLPGALS-KIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred ccccCccccc-HHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 9999976432 222221 11 1 11123456777777665543
No 260
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.4e-07 Score=99.15 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=102.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..|-|+|+|+--.||||||-+|-+.++-+...|--|.--
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI----------------------------------------- 42 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI----------------------------------------- 42 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe-----------------------------------------
Confidence 679999999999999999999988877555555444111
Q ss_pred hhcCCCCCcCCccEEEEEecC--CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--
Q 007538 117 RVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-- 192 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~-- 192 (599)
| ...+..+ ..+.|+|+||||- +.+..|=.+=.+-+|++||+| +++..+-
T Consensus 43 ---G----------A~~v~~~~~~~~~itFiDTPGH-------------eAFt~mRaRGa~vtDIaILVV-a~dDGv~pQ 95 (509)
T COG0532 43 ---G----------AYQVPLDVIKIPGITFIDTPGH-------------EAFTAMRARGASVTDIAILVV-AADDGVMPQ 95 (509)
T ss_pred ---e----------eEEEEeccCCCceEEEEcCCcH-------------HHHHHHHhcCCccccEEEEEE-EccCCcchh
Confidence 1 0012222 4588999999997 556666555556688888866 4554442
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcH--HHHHhCcc----cccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNA--LDVLEGRS----YRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~--~~~~~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
+-+++..++ ..+.|+++.+||+|+.+..-+. .++.+... |.-...++++++.+++++++++..+...
T Consensus 96 TiEAI~hak---~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 96 TIEAINHAK---AAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred HHHHHHHHH---HCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 234455554 4578999999999998544321 12222112 2222358899999999999887765443
No 261
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.64 E-value=3.5e-07 Score=82.87 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=99.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
-+|.++|--|||||++++.+.|.+. +..-+|.+-
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf------------------------------------------- 50 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGF------------------------------------------- 50 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccce-------------------------------------------
Confidence 3899999999999999999999752 221222111
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 198 (599)
--. .++ .....|++||..|. ..+++..++|....|++|+||+.+. ...-++...
T Consensus 51 -------~Ik--tl~---~~~~~L~iwDvGGq-------------~~lr~~W~nYfestdglIwvvDssD-~~r~~e~~~ 104 (185)
T KOG0073|consen 51 -------QIK--TLE---YKGYTLNIWDVGGQ-------------KTLRSYWKNYFESTDGLIWVVDSSD-RMRMQECKQ 104 (185)
T ss_pred -------eeE--EEE---ecceEEEEEEcCCc-------------chhHHHHHHhhhccCeEEEEEECch-HHHHHHHHH
Confidence 000 111 12467999999997 5568889999999999999887743 222333333
Q ss_pred HHH----HhCCCCCceEEEeccCCCCCCCC--cHHHHHhCc--ccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 199 LAR----EVDPTGERTFGVLTKLDLMDKGT--NALDVLEGR--SYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 199 la~----~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~--~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
..+ +-.-.|.+.+++.||.|+...-. .+...+.-+ ...-....+.+++.+++++.++++.+-....+
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 332 22334789999999999973211 111111111 12234566788888888887777776665555
No 262
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.64 E-value=8.4e-08 Score=90.68 Aligned_cols=119 Identities=19% Similarity=0.347 Sum_probs=65.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-|.|+++|..+||||+|+..|+...+. .++|...-....
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~~------------------------------------ 41 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIAY------------------------------------ 41 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCceE------------------------------------
Confidence 3578999999999999999999977542 223322100000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHH--hhcCCCeEEEEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS--YVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~--yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
.+..+....+.+||+||-.+.. ..+... |+..+.+||++|+++...-...
T Consensus 42 ----------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~ 93 (181)
T PF09439_consen 42 ----------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELR 93 (181)
T ss_dssp ----------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHH
T ss_pred ----------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHH
Confidence 0112345678999999985532 122222 6888999988887654211111
Q ss_pred HHHHH------HHHhCCCCCceEEEeccCCCCCCC
Q 007538 195 DAMKL------AREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 195 ~~l~l------a~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
++.++ .....+.+.|+++++||.|+....
T Consensus 94 ~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 94 DVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred HHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 11111 123346789999999999997644
No 263
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.4e-08 Score=90.82 Aligned_cols=108 Identities=12% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc--ccccHHHHHHHHHh-CCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREV-DPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~--d~~~~~~l~la~~~-d~~g~rti~VltK 216 (599)
..|.||||.|. +.++.++..|.+.+=..+|..+-.+. .+....|+.-.+.. --...-++++.||
T Consensus 67 ihLQlWDTAGQ-------------ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK 133 (219)
T KOG0081|consen 67 IHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNK 133 (219)
T ss_pred EEEeeeccccH-------------HHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCc
Confidence 46899999998 88999999999999888877654442 23334444333322 2235678899999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+|+.+......+-.......++++||..++-++.++++.++.+-
T Consensus 134 ~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 134 ADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred cchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHH
Confidence 99987654322223333456789999999998887766554443
No 264
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.62 E-value=1.9e-07 Score=101.35 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=57.2
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++|||+||. .+.+++|+ .-+..+|.++|+|........ +.+.+.++..+. -.+.|+|+||+
T Consensus 117 ~~i~~IDtPGH------------~~fi~~m~-~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKi 181 (460)
T PTZ00327 117 RHVSFVDCPGH------------DILMATML-NGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKI 181 (460)
T ss_pred ceEeeeeCCCH------------HHHHHHHH-HHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecc
Confidence 46899999995 13334443 345688988786654432122 234444444332 24689999999
Q ss_pred CCCCCCC--c----HHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 218 DLMDKGT--N----ALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 218 Dl~~~~~--~----~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
|+.+... . +.+++.+ ......+++++++.++.+++.+++
T Consensus 182 Dlv~~~~~~~~~~ei~~~l~~-~~~~~~~iipVSA~~G~nI~~Ll~ 226 (460)
T PTZ00327 182 DLVKEAQAQDQYEEIRNFVKG-TIADNAPIIPISAQLKYNIDVVLE 226 (460)
T ss_pred cccCHHHHHHHHHHHHHHHHh-hccCCCeEEEeeCCCCCCHHHHHH
Confidence 9986332 1 1111111 112345678888887776644433
No 265
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=91.87 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=94.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|..|+|||+|.-.+.+..|.+. ..++. +
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~pti----e---------------------------------------- 37 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTI----E---------------------------------------- 37 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-cCCCc----c----------------------------------------
Confidence 45899999999999999999999877322 10000 0
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l 197 (599)
..-..++. +. .....|.|+||+|. +....|-..|+...++.++|..-.+.. .-+++.
T Consensus 38 ------d~y~k~~~--v~-~~~~~l~ilDt~g~-------------~~~~~~~~~~~~~~~gF~lVysitd~~-SF~~~~ 94 (196)
T KOG0395|consen 38 ------DSYRKELT--VD-GEVCMLEILDTAGQ-------------EEFSAMRDLYIRNGDGFLLVYSITDRS-SFEEAK 94 (196)
T ss_pred ------ccceEEEE--EC-CEEEEEEEEcCCCc-------------ccChHHHHHhhccCcEEEEEEECCCHH-HHHHHH
Confidence 00111122 22 23456889999994 334566777999999998876544321 112222
Q ss_pred HH---H-HHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 198 KL---A-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 198 ~l---a-~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.+ . +.......|+++|.||+|+........+-........+.+|+.+++....++++.+..+.
T Consensus 95 ~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 95 QLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred HHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 22 2 222334469999999999987543222222222445667899999987766666554433
No 266
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.61 E-value=1.4e-07 Score=108.72 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=47.6
Q ss_pred CCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEecc
Q 007538 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 137 ~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK 216 (599)
.....+.||||||..+ +...+..+++.+|++|++++ +..++ ......+.+.....+.+.++|+||
T Consensus 83 ~~~~~i~liDTPG~~~-------------f~~~~~~al~~aD~~llVvd-a~~g~-~~~t~~~~~~~~~~~~p~ivviNK 147 (720)
T TIGR00490 83 GNEYLINLIDTPGHVD-------------FGGDVTRAMRAVDGAIVVVC-AVEGV-MPQTETVLRQALKENVKPVLFINK 147 (720)
T ss_pred CCceEEEEEeCCCccc-------------cHHHHHHHHHhcCEEEEEEe-cCCCC-CccHHHHHHHHHHcCCCEEEEEEC
Confidence 3456799999999854 22446778899999988775 44433 222333444444456788999999
Q ss_pred CCCCC
Q 007538 217 LDLMD 221 (599)
Q Consensus 217 ~Dl~~ 221 (599)
+|...
T Consensus 148 iD~~~ 152 (720)
T TIGR00490 148 VDRLI 152 (720)
T ss_pred hhccc
Confidence 99864
No 267
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.59 E-value=1.6e-07 Score=92.27 Aligned_cols=164 Identities=19% Similarity=0.251 Sum_probs=96.8
Q ss_pred ccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
....|.+++.|..|+|||||||.++.... -+.++- +
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k----~--------------------------------------- 168 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTSK----S--------------------------------------- 168 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhh-hhhhcC----C---------------------------------------
Confidence 45779999999999999999999997653 111100 0
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeE--EEEEecCCcccc
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSV--ILAISPANQDIA 192 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~i--IL~v~~a~~d~~ 192 (599)
..|.+..+ . +..-+..+++||+||+.....+ .+..+.+.+++..|+.+.+.. +++.+++...+.
T Consensus 169 ---K~g~Tq~i-------n-~f~v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~ 234 (320)
T KOG2486|consen 169 ---KNGKTQAI-------N-HFHVGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLVDASVPIQ 234 (320)
T ss_pred ---CCccceee-------e-eeeccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCC
Confidence 01111110 0 1122467999999996553322 224456678889998764322 222344555553
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCc-----HHHH---Hh---CcccccCCCeEEEEcCChhhhccCCC
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN-----ALDV---LE---GRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~-----~~~~---~~---~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
..+. ..+..+...+.|...|+||||....... ...+ +. .....-.++|+.|+.++..+++.+.-
T Consensus 235 ~~D~-~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~ 309 (320)
T KOG2486|consen 235 PTDN-PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLL 309 (320)
T ss_pred CCCh-HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeee
Confidence 3333 2455566678999999999998754321 0111 11 11233446788888888877765543
No 268
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.58 E-value=1.3e-07 Score=96.40 Aligned_cols=139 Identities=22% Similarity=0.356 Sum_probs=73.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
.|.|||..|+||||++|+|++..+.+......+... . .
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~---~---~------------------------------------ 43 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA---S---I------------------------------------ 43 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc---c---c------------------------------------
Confidence 689999999999999999999877554421111000 0 0
Q ss_pred CCCCCcCCccEEEEEec-CCCCCcEEEeCCCCCccCCC-CCCccHHHHHHHHHHHhhcC-------------CCeEEEEE
Q 007538 120 GKTKQISPIPIHLSIYS-PNVVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVILAI 184 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~-~~~~~ltlvDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~-------------~~~iIL~v 184 (599)
..+..+...... +.. ....+|++|||||+.+.-.. ...+.+...+.+....|+.. .|+++.++
T Consensus 44 ~~~~~i~~~~~~--l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI 121 (281)
T PF00735_consen 44 SRTLEIEERTVE--LEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFI 121 (281)
T ss_dssp -SCEEEEEEEEE--EEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE
T ss_pred ccccceeeEEEE--eccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEE
Confidence 000001111111 111 11347999999999753211 11122333444444444331 25777777
Q ss_pred ecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007538 185 SPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 185 ~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~ 224 (599)
.|....+ .+..+...+.+.. ..++|-||.|.|.+...+
T Consensus 122 ~pt~~~L-~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 122 PPTGHGL-KPLDIEFMKRLSK-RVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp -TTSSSS--HHHHHHHHHHTT-TSEEEEEESTGGGS-HHH
T ss_pred cCCCccc-hHHHHHHHHHhcc-cccEEeEEecccccCHHH
Confidence 7766666 3455567777765 478999999999987543
No 269
>PRK13351 elongation factor G; Reviewed
Probab=98.56 E-value=3.3e-07 Score=105.47 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....++||||||.. .+...+..+++.+|++|++++... .. ........+.+...+.|.++|+||+
T Consensus 71 ~~~~i~liDtPG~~-------------df~~~~~~~l~~aD~~ilVvd~~~-~~-~~~~~~~~~~~~~~~~p~iiviNK~ 135 (687)
T PRK13351 71 DNHRINLIDTPGHI-------------DFTGEVERSLRVLDGAVVVFDAVT-GV-QPQTETVWRQADRYGIPRLIFINKM 135 (687)
T ss_pred CCEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEEEEEeCCC-CC-CHHHHHHHHHHHhcCCCEEEEEECC
Confidence 35689999999983 234567889999999988775443 33 2223344455555678999999999
Q ss_pred CCCCC
Q 007538 218 DLMDK 222 (599)
Q Consensus 218 Dl~~~ 222 (599)
|+...
T Consensus 136 D~~~~ 140 (687)
T PRK13351 136 DRVGA 140 (687)
T ss_pred CCCCC
Confidence 98753
No 270
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=6.3e-07 Score=95.31 Aligned_cols=154 Identities=16% Similarity=0.271 Sum_probs=96.5
Q ss_pred cccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHH
Q 007538 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (599)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (599)
+....|.|-|+|.---||||||.+|-+..+-....|-.|. ..
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQ---------------hI----------------------- 190 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQ---------------HI----------------------- 190 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccc---------------ee-----------------------
Confidence 3457899999999999999999999887653333332221 11
Q ss_pred HHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 007538 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (599)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~ 193 (599)
| ...+.-|.+..+||.||||- ..+..|-.+-..-.|.++||| ++.... -
T Consensus 191 ------G----------AF~V~~p~G~~iTFLDTPGH-------------aAF~aMRaRGA~vtDIvVLVV-AadDGV-m 239 (683)
T KOG1145|consen 191 ------G----------AFTVTLPSGKSITFLDTPGH-------------AAFSAMRARGANVTDIVVLVV-AADDGV-M 239 (683)
T ss_pred ------c----------eEEEecCCCCEEEEecCCcH-------------HHHHHHHhccCccccEEEEEE-EccCCc-c
Confidence 1 11355567789999999997 556666666666678776655 454444 3
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcH----HHHHhCcccccCC----CeEEEEcCChhhhccCCCH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNA----LDVLEGRSYRLQH----PWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~----~~~~~~~~~~l~~----g~~~v~~~s~~~i~~~~~~ 258 (599)
...++-.+.....+.|+|+.+||+|.. +.+. .+++........+ ..+++++..+++++.+.+.
T Consensus 240 pQT~EaIkhAk~A~VpiVvAinKiDkp--~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~ea 310 (683)
T KOG1145|consen 240 PQTLEAIKHAKSANVPIVVAINKIDKP--GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEA 310 (683)
T ss_pred HhHHHHHHHHHhcCCCEEEEEeccCCC--CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHH
Confidence 333333444445578999999999965 3333 2333322222222 3567777777776654433
No 271
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.54 E-value=4.3e-07 Score=98.79 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=60.2
Q ss_pred cCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--------ccHHHHHHHHHhCCCC
Q 007538 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTG 207 (599)
Q Consensus 136 ~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--------~~~~~l~la~~~d~~g 207 (599)
......++|+||||. +.+...+..++..+|+.||||+.....+ .+.+.+.+++ ..|
T Consensus 81 ~~~~~~i~liDtPGh-------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~---~~g 144 (447)
T PLN00043 81 ETTKYYCTVIDAPGH-------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF---TLG 144 (447)
T ss_pred cCCCEEEEEEECCCH-------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH---HcC
Confidence 344568999999996 3444445667889999988776544222 1223333333 345
Q ss_pred C-ceEEEeccCCCCCCCC---cH-------HHHHhCccc-ccCCCeEEEEcCChhhhc
Q 007538 208 E-RTFGVLTKLDLMDKGT---NA-------LDVLEGRSY-RLQHPWVGIVNRSQADIN 253 (599)
Q Consensus 208 ~-rti~VltK~Dl~~~~~---~~-------~~~~~~~~~-~l~~g~~~v~~~s~~~i~ 253 (599)
. +.|+++||+|+.+... .. .+++...-. .....|+++++..+.++.
T Consensus 145 i~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 145 VKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred CCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 5 5788999999873221 11 111211111 123568999998887664
No 272
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.52 E-value=5.7e-07 Score=89.05 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=43.2
Q ss_pred cCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEe
Q 007538 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVL 214 (599)
Q Consensus 136 ~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~r-ti~Vl 214 (599)
.+....++++||||.. .. +...++.+|+++++++ +..++..+ ...+...+...|.+ +++|+
T Consensus 79 ~~~~~~i~~vDtPg~~---------------~~-~l~~ak~aDvVllviD-a~~~~~~~-~~~i~~~l~~~g~p~vi~Vv 140 (225)
T cd01882 79 TGKKRRLTFIECPNDI---------------NA-MIDIAKVADLVLLLID-ASFGFEME-TFEFLNILQVHGFPRVMGVL 140 (225)
T ss_pred ecCCceEEEEeCCchH---------------HH-HHHHHHhcCEEEEEEe-cCcCCCHH-HHHHHHHHHHcCCCeEEEEE
Confidence 3456789999999852 11 2233577898866654 55444332 23455545444556 56699
Q ss_pred ccCCCCCCC
Q 007538 215 TKLDLMDKG 223 (599)
Q Consensus 215 tK~Dl~~~~ 223 (599)
||+|+.+..
T Consensus 141 nK~D~~~~~ 149 (225)
T cd01882 141 THLDLFKKN 149 (225)
T ss_pred eccccCCcH
Confidence 999998543
No 273
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.52 E-value=2.6e-06 Score=88.11 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=57.0
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
...++.||||||+... +. ..+..+|+++++..+... .+.......+ .+.+.++|+||+
T Consensus 125 ~g~D~viidT~G~~~~------e~----------~i~~~aD~i~vv~~~~~~----~el~~~~~~l--~~~~~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS------EV----------DIANMADTFVVVTIPGTG----DDLQGIKAGL--MEIADIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCchh------hh----------HHHHhhceEEEEecCCcc----HHHHHHHHHH--hhhccEEEEEcc
Confidence 3689999999997431 10 124457877665443321 1111111212 245679999999
Q ss_pred CCCCCCCcH--HHHH----h---CcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 218 DLMDKGTNA--LDVL----E---GRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 218 Dl~~~~~~~--~~~~----~---~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
|+....... ...+ . ........+++.+++.++.+++++...+...
T Consensus 183 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 183 DGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred cccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 998644211 0000 1 1111122357899999998888776655543
No 274
>PTZ00416 elongation factor 2; Provisional
Probab=98.50 E-value=7.1e-07 Score=104.30 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=47.1
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl 219 (599)
..++|+||||..+ +..-+...++.+|++|+||+ +..++..+ ...+++.+...+.+.|+++||+|+
T Consensus 92 ~~i~liDtPG~~~-------------f~~~~~~al~~~D~ailVvd-a~~g~~~~-t~~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVD-------------FSSEVTAALRVTDGALVVVD-CVEGVCVQ-TETVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHh-------------HHHHHHHHHhcCCeEEEEEE-CCCCcCcc-HHHHHHHHHHcCCCEEEEEEChhh
Confidence 4589999999833 22234667788999877665 55555333 335666666677899999999999
Q ss_pred C
Q 007538 220 M 220 (599)
Q Consensus 220 ~ 220 (599)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 275
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.50 E-value=8.7e-07 Score=103.76 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...++||||||..+ . ..-+...++.+|+.|+||+ +..++..+ ...+.+.+...+.+.|+++||+|
T Consensus 97 ~~~inliDtPGh~d------------F-~~e~~~al~~~D~ailVvd-a~~Gv~~~-t~~~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVD------------F-SSEVTAALRITDGALVVVD-CIEGVCVQ-TETVLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHH------------H-HHHHHHHHhhcCEEEEEEE-CCCCCccc-HHHHHHHHHHCCCCEEEEEECCc
Confidence 34578999999732 2 2334566788999988765 44454333 33456666677889999999999
Q ss_pred CC
Q 007538 219 LM 220 (599)
Q Consensus 219 l~ 220 (599)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
No 276
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.49 E-value=3.9e-07 Score=91.24 Aligned_cols=156 Identities=16% Similarity=0.211 Sum_probs=104.1
Q ss_pred cccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHH
Q 007538 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (599)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (599)
....-|.|+|||..|||||||+++|++..+.|.+.-+.|--||-=.
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~---------------------------------- 219 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHS---------------------------------- 219 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhh----------------------------------
Confidence 3458899999999999999999999999998998877776551100
Q ss_pred HHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 007538 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (599)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~ 193 (599)
..-|.+....+.||-|+++.- |-.+...++. +..-+..+|.++-+++.++.++..
T Consensus 220 --------------------a~Lpsg~~vlltDTvGFisdL----P~~LvaAF~A-TLeeVaeadlllHvvDiShP~ae~ 274 (410)
T KOG0410|consen 220 --------------------AHLPSGNFVLLTDTVGFISDL----PIQLVAAFQA-TLEEVAEADLLLHVVDISHPNAEE 274 (410)
T ss_pred --------------------ccCCCCcEEEEeechhhhhhC----cHHHHHHHHH-HHHHHhhcceEEEEeecCCccHHH
Confidence 123456678899999997632 3334444433 455677899888877776666544
Q ss_pred HH--HHHHHHHhCCC----CCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 194 SD--AMKLAREVDPT----GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 194 ~~--~l~la~~~d~~----g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
+. .+...+.++-. ..++|=|=||+|...... .....+-+++++..+.+.++....
T Consensus 275 q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~----------e~E~n~~v~isaltgdgl~el~~a 335 (410)
T KOG0410|consen 275 QRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----------EEEKNLDVGISALTGDGLEELLKA 335 (410)
T ss_pred HHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC----------ccccCCccccccccCccHHHHHHH
Confidence 43 45555666532 356677777877654321 122244677888888776554443
No 277
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.47 E-value=3.9e-07 Score=99.14 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=57.6
Q ss_pred cCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--------ccHHHHHHHHHhCCCC
Q 007538 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTG 207 (599)
Q Consensus 136 ~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--------~~~~~l~la~~~d~~g 207 (599)
..+...++||||||.. +.+.++ ...+..+|+++|+|+....-+ .+.+.+.+++. .|
T Consensus 81 ~~~~~~i~lIDtPGh~------------~f~~~~-~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~g 144 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHR------------DFIKNM-ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LG 144 (446)
T ss_pred ccCCeEEEEEECCChH------------HHHHHH-HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cC
Confidence 3445789999999952 233333 344678999988766443211 23344444443 45
Q ss_pred C-ceEEEeccCCCC--CCC-Cc---HHHHHhCcccc-----cCCCeEEEEcCChhhhc
Q 007538 208 E-RTFGVLTKLDLM--DKG-TN---ALDVLEGRSYR-----LQHPWVGIVNRSQADIN 253 (599)
Q Consensus 208 ~-rti~VltK~Dl~--~~~-~~---~~~~~~~~~~~-----l~~g~~~v~~~s~~~i~ 253 (599)
. +.|+++||+|.. +-. .. ..+.+...... ...+++++++.++.++.
T Consensus 145 i~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 145 VKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMI 202 (446)
T ss_pred CCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcc
Confidence 4 467999999943 211 11 11212211111 23567888988887764
No 278
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.46 E-value=6.9e-07 Score=103.30 Aligned_cols=133 Identities=14% Similarity=0.253 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+...|+|+|+.++|||||+++|+... |..++.- . .+..+.|+...+. .
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------~------------g~~~~~D~~~~E~------~ 66 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------A------------GEQLALDFDEEEQ------A 66 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------c------------CcceecCccHHHH------H
Confidence 45679999999999999999998642 2222100 0 0011122221111 1
Q ss_pred hhcCCCCCcCCccEEEEEe-cCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 117 RVTGKTKQISPIPIHLSIY-SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~-~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
.| -.+....+.+... ......++||||||..+ +...+...++.+|++|++|+ +..+.. ..
T Consensus 67 --rg--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~d-------------f~~~~~~~l~~~D~avlVvd-a~~g~~-~~ 127 (731)
T PRK07560 67 --RG--ITIKAANVSMVHEYEGKEYLINLIDTPGHVD-------------FGGDVTRAMRAVDGAIVVVD-AVEGVM-PQ 127 (731)
T ss_pred --hh--hhhhccceEEEEEecCCcEEEEEEcCCCccC-------------hHHHHHHHHHhcCEEEEEEE-CCCCCC-cc
Confidence 11 1122222332221 12345689999999844 23456677888999888665 444432 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCC
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~ 220 (599)
...+++.....+.+.|+++||+|+.
T Consensus 128 t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 128 TETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHHcCCCeEEEEECchhh
Confidence 3334444334466789999999986
No 279
>PTZ00099 rab6; Provisional
Probab=98.44 E-value=4.7e-07 Score=86.11 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=76.7
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHHHHHHHhCCCCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~la~~~d~~g~rti~VltK 216 (599)
...+.||||||. +....+...|++.+|++|+|++..+.. +. ...|+..+......+.++++|.||
T Consensus 28 ~v~l~iwDt~G~-------------e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQ-------------ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCCh-------------HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 467899999998 445667888999999998887655432 21 123444343333345788999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHHHhHh
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYF 269 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff 269 (599)
+|+.+......+.........+..|+.+++.++.++.+.+..+.....+..-+
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 99975322111111111223345688999999999998888777666654433
No 280
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.42 E-value=3.3e-07 Score=85.38 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPR 66 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (599)
..|+++|.+|+|||||+|+|.|....+.
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~ 130 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKV 130 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceee
Confidence 3688999999999999999999865433
No 281
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.40 E-value=1.9e-07 Score=83.68 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=100.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
-.+||++|.--+|||||+=..+...|- .. ....++
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn------------------~k------------------HlsTlQ--------- 47 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN------------------CK------------------HLSTLQ--------- 47 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc------------------hh------------------hHHHHH---------
Confidence 458999999999999999999887771 00 000111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH--
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~-- 195 (599)
..|-.+.+.++ + ...+|.||||.|. +.+..+-.-|.+..|..+||.+-...|. -+.
T Consensus 48 -----ASF~~kk~n~e--d-~ra~L~IWDTAGQ-------------ErfHALGPIYYRgSnGalLVyDITDrdS-FqKVK 105 (218)
T KOG0088|consen 48 -----ASFQNKKVNVE--D-CRADLHIWDTAGQ-------------ERFHALGPIYYRGSNGALLVYDITDRDS-FQKVK 105 (218)
T ss_pred -----HHHhhcccccc--c-ceeeeeeeeccch-------------HhhhccCceEEeCCCceEEEEeccchHH-HHHHH
Confidence 11222222222 2 3468999999998 5556666679999999999876555443 233
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHHH
Q 007538 196 -AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 266 (599)
Q Consensus 196 -~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~ 266 (599)
|..-.+.......-.++|.||+|+-.+.....+.........+.-|+.+++....++.+++..+.+..-|.
T Consensus 106 nWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 106 NWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHH
Confidence 33334444455567889999999976543222222222233445577777777777776666665555553
No 282
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.40 E-value=4.8e-07 Score=85.63 Aligned_cols=30 Identities=33% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCccc
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (599)
..+|+|+|.+|+|||||+|+|+|....+++
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~ 146 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVG 146 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceec
Confidence 358999999999999999999998754443
No 283
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.40 E-value=6.1e-07 Score=83.46 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=29.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCccccc-cccccc
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRP 75 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p 75 (599)
..++|+++|.+|+||||++|+|+|....+.+.+ .+|+.+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 567899999999999999999999765444332 334443
No 284
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=6.1e-07 Score=82.05 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=23.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
.+++++|.+|+|||||+|+|+|..+
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3899999999999999999999865
No 285
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.38 E-value=5.2e-07 Score=86.87 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999998754
No 286
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=6.8e-07 Score=92.23 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=69.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.++.+||-||+|||||+|||+....-+....+||--|-+=...- +...+. ....+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v--------------~d~rl~-----------~L~~~ 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYV--------------PDCRLD-----------ELAEI 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEec--------------CchHHH-----------HHHHh
Confidence 47999999999999999999998866788899998882211100 000000 00000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a 187 (599)
.+. +..+. ...+.|||.+|+...++.| +.+-+....-|+++|+|+.||...
T Consensus 58 ~~c-----~~k~~-------~~~ve~vDIAGLV~GAs~G------eGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 58 VKC-----PPKIR-------PAPVEFVDIAGLVKGASKG------EGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCC-----CCcEE-------eeeeEEEEecccCCCcccC------CCcchHHHHhhhhcCeEEEEEEec
Confidence 110 00011 2468899999999988775 455666677889999998877543
No 287
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.34 E-value=1.3e-07 Score=86.47 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=47.8
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc--ccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~--d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.+|||.|. +.+..+++.|.+.+.+.+||...... .-++.+|.+-+.. .-...|+++|-||+
T Consensus 69 vr~mlWdtagq-------------eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~-e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 69 VRSMLWDTAGQ-------------EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQK-ETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHHhccc-------------hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHH-HhccCCeEEeeccc
Confidence 34678999997 67788899999999998887643321 1123333332221 12368999999999
Q ss_pred CCCCCC
Q 007538 218 DLMDKG 223 (599)
Q Consensus 218 Dl~~~~ 223 (599)
|+++..
T Consensus 135 Dlveds 140 (246)
T KOG4252|consen 135 DLVEDS 140 (246)
T ss_pred hhhHhh
Confidence 998654
No 288
>PRK12740 elongation factor G; Reviewed
Probab=98.34 E-value=2e-06 Score=98.94 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=49.0
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....++||||||..+ +...+..++..+|++++++++.. +. ......+.+.+...+.+.++|+||+
T Consensus 58 ~~~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllvvd~~~-~~-~~~~~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 58 KGHKINLIDTPGHVD-------------FTGEVERALRVLDGAVVVVCAVG-GV-EPQTETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEEEeCCC-Cc-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 357899999999832 33456678889999888776543 33 2333344455555678999999999
Q ss_pred CCCCC
Q 007538 218 DLMDK 222 (599)
Q Consensus 218 Dl~~~ 222 (599)
|+...
T Consensus 123 D~~~~ 127 (668)
T PRK12740 123 DRAGA 127 (668)
T ss_pred CCCCC
Confidence 98753
No 289
>PRK13768 GTPase; Provisional
Probab=98.32 E-value=3.7e-06 Score=84.76 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcC--CCeEEEEEecCCcc-----cccHHHHHHHHHhCCCCCceEE
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPANQD-----IATSDAMKLAREVDPTGERTFG 212 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~--~~~iIL~v~~a~~d-----~~~~~~l~la~~~d~~g~rti~ 212 (599)
.++.+|||||..+.... ...... ..+++.. ++++++++ ++... +....++.+..+. ..+.+.+.
T Consensus 97 ~~~~~~d~~g~~~~~~~------~~~~~~-~~~~l~~~~~~~ii~li-D~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF------RESGRK-LVERLSGSSKSVVVFLI-DAVLAKTPSDFVSLLLLALSVQL-RLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHhh------hHHHHH-HHHHHHhcCCeEEEEEe-chHHhCCHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 48999999998653211 011122 2233333 66665554 44321 1111222222222 34789999
Q ss_pred EeccCCCCCCCC
Q 007538 213 VLTKLDLMDKGT 224 (599)
Q Consensus 213 VltK~Dl~~~~~ 224 (599)
|+||+|+.+..+
T Consensus 168 v~nK~D~~~~~~ 179 (253)
T PRK13768 168 VLNKADLLSEEE 179 (253)
T ss_pred EEEhHhhcCchh
Confidence 999999987653
No 290
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=1e-06 Score=81.87 Aligned_cols=149 Identities=17% Similarity=0.285 Sum_probs=93.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+++|=-+|||||++..|--.++ +|-.||
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~-------vttvPT------------------------------------------- 48 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEI-------VTTVPT------------------------------------------- 48 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCc-------ccCCCc-------------------------------------------
Confidence 899999999999999999865543 332551
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~--- 196 (599)
.||.-..+.. . ...+++||.-|. +.++.+.+.|.++.+.+|+||+++..+- .+++
T Consensus 49 ---iGfnVE~v~y----k-n~~f~vWDvGGq-------------~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R-i~eak~e 106 (181)
T KOG0070|consen 49 ---IGFNVETVEY----K-NISFTVWDVGGQ-------------EKLRPLWKHYFQNTQGLIFVVDSSDRER-IEEAKEE 106 (181)
T ss_pred ---cccceeEEEE----c-ceEEEEEecCCC-------------cccccchhhhccCCcEEEEEEeCCcHHH-HHHHHHH
Confidence 2232222222 2 577999999998 3457788999999999999887665432 2222
Q ss_pred -HHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccccCCCeE--EEEcCChhhhccCCCHHHH
Q 007538 197 -MKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWV--GIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 -l~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l~~g~~--~v~~~s~~~i~~~~~~~~~ 261 (599)
.++....+..+.++++..||-|+...-+ +..+.+.-.... ...|+ +..+.+++++.++++.+..
T Consensus 107 L~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~-~~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 107 LHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLR-SRNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccC-CCCcEEeeccccccccHHHHHHHHHH
Confidence 2233333345789999999999876443 122222211111 13443 5566777776665554443
No 291
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.30 E-value=9e-06 Score=72.84 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=59.6
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC----CCCceEEEec
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP----TGERTFGVLT 215 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~----~g~rti~Vlt 215 (599)
..|.|.||.|+...+ .++-+.|++-+|+.+|+.++++... -+..-.+-+++|. ...++++..|
T Consensus 60 E~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~eS-f~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPES-FQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred heEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHHH-HHHHHHHHHHHhhccccccccEEEEec
Confidence 468899999995421 4567889999999999887765322 1222223345553 3468888899
Q ss_pred cCCCCCCCCcHHHHHhCcccccCCCeEEEEcCCh
Q 007538 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ 249 (599)
Q Consensus 216 K~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~ 249 (599)
|.|+..+.+...++.+.-....+...+.|.+...
T Consensus 127 ~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR 160 (198)
T KOG3883|consen 127 KRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDR 160 (198)
T ss_pred hhhcccchhcCHHHHHHHHhhhheeEEEEEeccc
Confidence 9999866553334333222233344455555433
No 292
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.28 E-value=9.7e-07 Score=89.10 Aligned_cols=103 Identities=22% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+-++|.+||-||+||||++|+|+....-|....+||--|-+-+..-. ..+| +
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~--------------d~Rf--------------d 70 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVP--------------DSRF--------------D 70 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecC--------------chHH--------------H
Confidence 45689999999999999999999887767778899988854442110 1111 1
Q ss_pred hhcCCCCCcCCccEEEEEecCC---CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007538 117 RVTGKTKQISPIPIHLSIYSPN---VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~---~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~ 186 (599)
..+ .+++|. ...|++.|..|+++.++.| +.+-+-..+.|+.+|+|+-+|..
T Consensus 71 ~l~-------------~~Y~~~~~vpa~l~v~DIAGLvkGAs~G------~GLGN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 71 LLC-------------PIYGPKSKVPAFLTVYDIAGLVKGASAG------EGLGNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred HHH-------------HhcCCcceeeeeEEEEeecccccCcccC------cCchHHHHHhhhhccceeEEEEe
Confidence 111 122222 2468999999999988776 44566677888999998776643
No 293
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.23 E-value=2.7e-06 Score=89.11 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=64.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC-CcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.++.+||-||+|||||+|+|++... -+.....||..|..-.+ ..++. . ++. +..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v-~v~d~-------------r---~d~----L~~---- 57 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV-NPSDP-------------R---LDL----LAI---- 57 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE-Eechh-------------H---HHH----HHH----
Confidence 3789999999999999999999875 44556788887733221 11000 0 000 000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEec
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~ 186 (599)
... +. ......+.++|.||+...+..| ....+-....++++|+++.||..
T Consensus 58 ~~~------~~-------~~~~a~i~~~DiaGlv~gAs~g------~Glgn~fL~~ir~~d~l~hVvr~ 107 (368)
T TIGR00092 58 YIK------PE-------KVPPTTTEFVDIAGLVGGASKG------EGLGNQFLANIREVDIIQHVVRC 107 (368)
T ss_pred HhC------Cc-------CcCCceEEEEeccccccchhcc------cCcchHHHHHHHhCCEEEEEEeC
Confidence 000 00 0012357899999999876554 22345566788899998777654
No 294
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.23 E-value=7.3e-06 Score=84.15 Aligned_cols=83 Identities=19% Similarity=0.379 Sum_probs=55.0
Q ss_pred CCcEEEeCCCCCccCCCCCC-ccHHHHHHHHHHHhhcC--------------CCeEEEEEecCCcccccHHHHHHHHHhC
Q 007538 140 VNLTLIDLPGLTKVAVEGQP-DTIVEDIESMVRSYVEK--------------PNSVILAISPANQDIATSDAMKLAREVD 204 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~-~~~~~~i~~~~~~yi~~--------------~~~iIL~v~~a~~d~~~~~~l~la~~~d 204 (599)
.+|++|||||+.+.-..... +-+.+.+.+....|+.+ .+|++.++-|....+ ..-.+...+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l-~~~DIe~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGL-KPLDIEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCC-CHHHHHHHHHHh
Confidence 57999999999874332111 22455566666666542 357777777777776 344445666665
Q ss_pred CCCCceEEEeccCCCCCCCC
Q 007538 205 PTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 205 ~~g~rti~VltK~Dl~~~~~ 224 (599)
. ...+|-||.|.|.....+
T Consensus 161 ~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred c-ccCeeeeeeccccCCHHH
Confidence 4 578999999999986543
No 295
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.22 E-value=3.9e-06 Score=85.77 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=24.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcc
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPR 66 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (599)
..+|+|||.+|+||||++|+|+|....++
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 45799999999999999999999865333
No 296
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.21 E-value=6.3e-06 Score=80.90 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=79.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCC-----------CCccceeee----cCC-CCc
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTED-----------GSQEYAEFL----HLP-KRR 100 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~-----------~~~~~~~~~----~~~-~~~ 100 (599)
..+-|+|||--||||||++..|.+.-. ... | .|.+++|-..-. .+..|.+.. ..| |..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~---~-ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH--AKK---T-PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh--hcc---C-CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 566799999999999999999986411 111 1 155555421000 011122111 111 111
Q ss_pred c-------cChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHh
Q 007538 101 F-------TDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSY 173 (599)
Q Consensus 101 ~-------~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~y 173 (599)
. +.|+++...|++..+ ..+..||||||.+..-.=.-+..+ ++..+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~----------------------~~~~~liDTPGQIE~FtWSAsGsI------Ite~l 143 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAE----------------------EFDYVLIDTPGQIEAFTWSASGSI------ITETL 143 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhc----------------------ccCEEEEcCCCceEEEEecCCccc------hHhhH
Confidence 1 344555554443321 256789999998864321111111 23333
Q ss_pred hcCCCeEEEEEecCCcccc----cHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 174 VEKPNSVILAISPANQDIA----TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 174 i~~~~~iIL~v~~a~~d~~----~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
...-.+||..|++...... -+..+--+.-+-...-|+|+|+||+|+.+.+
T Consensus 144 ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 144 ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 3333445444544332111 1223333344455678999999999998765
No 297
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=5.4e-06 Score=85.73 Aligned_cols=83 Identities=23% Similarity=0.410 Sum_probs=54.1
Q ss_pred CCcEEEeCCCCCccCCCCCC-ccHHHHHHHHHHHhhc-------------CCCeEEEEEecCCcccccHHHHHHHHHhCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQP-DTIVEDIESMVRSYVE-------------KPNSVILAISPANQDIATSDAMKLAREVDP 205 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~-~~~~~~i~~~~~~yi~-------------~~~~iIL~v~~a~~d~~~~~~l~la~~~d~ 205 (599)
.+||+|||||+.+.-..... .-+.+.+.+....|+. +.+|++.++.|....+..- .+.+.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~-Di~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPL-DIEFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHh-hHHHHHHHhc
Confidence 57899999999774322111 1144455556666653 2468888888877766333 3445555543
Q ss_pred CCCceEEEeccCCCCCCCC
Q 007538 206 TGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 206 ~g~rti~VltK~Dl~~~~~ 224 (599)
..++|-||.|.|.+...+
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 578999999999987654
No 298
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.20 E-value=4.8e-06 Score=89.54 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=77.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|++||+.|+|||||+=+|++.+|.| .++-|.|-.. +.
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i~---------------------------------------IP 48 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRIL---------------------------------------IP 48 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhccc---cccccCCccc---------------------------------------cC
Confidence 89999999999999999999998722 2222222000 00
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEE--ec-CCcccccHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAI--SP-ANQDIATSDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v--~~-a~~d~~~~~~ 196 (599)
. =..|.....+||||+-- ...+..+.+-++++|+|.++- +. .+.|--...|
T Consensus 49 ---a----------dvtPe~vpt~ivD~ss~-------------~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~W 102 (625)
T KOG1707|consen 49 ---A----------DVTPENVPTSIVDTSSD-------------SDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKW 102 (625)
T ss_pred ---C----------ccCcCcCceEEEecccc-------------cchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhh
Confidence 0 12345556899999832 112344456678899876653 21 2334456778
Q ss_pred HHHHHHhC--CCCCceEEEeccCCCCCCCCc
Q 007538 197 MKLAREVD--PTGERTFGVLTKLDLMDKGTN 225 (599)
Q Consensus 197 l~la~~~d--~~g~rti~VltK~Dl~~~~~~ 225 (599)
+-+.++.- ....|+|+|.||.|..+....
T Consensus 103 LPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 103 LPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 88888765 235899999999999876543
No 299
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=9.8e-06 Score=84.33 Aligned_cols=102 Identities=18% Similarity=0.354 Sum_probs=61.1
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--------ccHHHHHHHHHhCCCCCc
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTGER 209 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--------~~~~~l~la~~~d~~g~r 209 (599)
+...+||+|+||. + +.+.+|+.. +.++|+.||+|......+ -+.+-.-+++.+. -..
T Consensus 83 ~k~~~tIiDaPGH-r-----------dFvknmItG-asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~ 147 (428)
T COG5256 83 DKYNFTIIDAPGH-R-----------DFVKNMITG-ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQ 147 (428)
T ss_pred CCceEEEeeCCch-H-----------HHHHHhhcc-hhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--Cce
Confidence 3468999999993 3 455666543 457898888776443321 1223344555543 368
Q ss_pred eEEEeccCCCCCCCCc----HHHHHhCcc----cc-cCCCeEEEEcCChhhhcc
Q 007538 210 TFGVLTKLDLMDKGTN----ALDVLEGRS----YR-LQHPWVGIVNRSQADINR 254 (599)
Q Consensus 210 ti~VltK~Dl~~~~~~----~~~~~~~~~----~~-l~~g~~~v~~~s~~~i~~ 254 (599)
.|+++||+|+++-..+ +.+.+.... +. -...|+++++-++.++.+
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 8999999999973322 111111111 11 135688999888877543
No 300
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.17 E-value=7.4e-06 Score=77.48 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
..++++++|.+|+||||++|+|++..+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 446899999999999999999999875
No 301
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.16 E-value=7.4e-06 Score=81.02 Aligned_cols=32 Identities=38% Similarity=0.478 Sum_probs=26.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC--CCCccccc
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR--DFLPRGSG 69 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~--~~lP~~~~ 69 (599)
+.-.|+|+|.+++|||+|+|.|+|. .| +.+.+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~ 39 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDT 39 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCC
Confidence 3447999999999999999999998 43 55544
No 302
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.15 E-value=7e-06 Score=81.09 Aligned_cols=120 Identities=19% Similarity=0.306 Sum_probs=69.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc--ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
+|+++|..+|||||..+.+.+. ..|+++. -+|-.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCce-----------------------------------------
Confidence 5899999999999999999986 3465543 1121110
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc----
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---- 193 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~---- 193 (599)
.-.+.......+.+||.||....... .....-....++..++|.|++..+.++..
T Consensus 39 -------------~~~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 39 -------------KSHVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp -------------EEEEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTESEEEEEEETT-STCHHHHHH
T ss_pred -------------EEEEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccCEEEEEEEcccccHHHHHHH
Confidence 01133344568999999998653211 01111222357788887777655455321
Q ss_pred -HHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 194 -~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
...++.+.+..| +..+.+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 234455667777 57889999999998644
No 303
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.15 E-value=4.3e-07 Score=79.08 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHHHHHHHhCCCCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~la~~~d~~g~rti~VltK 216 (599)
...|.+|||.|. +.+++.+..|.+.+|+++|+.+.+|.. +. .+.|+.-+.++........++.||
T Consensus 46 kvklqiwdtagq-------------erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk 112 (192)
T KOG0083|consen 46 KVKLQIWDTAGQ-------------ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNK 112 (192)
T ss_pred EEEEEEeeccch-------------HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccc
Confidence 356899999998 788999999999999998887777642 22 345666666666666778899999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
+|+..+...-.+--+......+++|+..++.++-+++-.+..+.
T Consensus 113 ~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 113 CDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred cccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 99975432111111111234578999999999877765444333
No 304
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=1.6e-06 Score=90.28 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (599)
++.|||-||+||||+||+|.|... ..+.++|
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~P 164 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRP 164 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCC
Confidence 699999999999999999999975 4455555
No 305
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=2.6e-05 Score=81.84 Aligned_cols=156 Identities=18% Similarity=0.269 Sum_probs=80.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccc--cccccccEEEEEEecCCCC---ccceeeecCCCCcccChHHHHHHHH
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKTEDGS---QEYAEFLHLPKRRFTDFSMVRKEIQ 112 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~--~~~Tr~p~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (599)
...|++||..||||||++..|.+. +...+. ++++--+ .+. ... ..|++....+-....+...+.+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~~GkkVglI~aDt-----~Ri-aAvEQLk~yae~lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHGKKKTVGFITTDH-----SRI-GTVQQLQDYVKTIGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHHcCCcEEEEecCC-----cch-HHHHHHHHHhhhcCCcEEecCCHHHHHHHHH
Confidence 357899999999999999999864 211111 1111100 000 000 1111111111111234444444433
Q ss_pred HHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 007538 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (599)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~ 192 (599)
.... ....++.||||||-.... ......+..++.. ..++.++|| ++++..
T Consensus 314 ~lk~--------------------~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~--~~PdevlLV-LsATtk-- 363 (436)
T PRK11889 314 YFKE--------------------EARVDYILIDTAGKNYRA-----SETVEEMIETMGQ--VEPDYICLT-LSASMK-- 363 (436)
T ss_pred HHHh--------------------ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhh--cCCCeEEEE-ECCccC--
Confidence 2111 013689999999985421 1122222232222 236666665 444422
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHh
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~ 231 (599)
.++....++.+... .-.=+|+||.|....+..+.++..
T Consensus 364 ~~d~~~i~~~F~~~-~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 364 SKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred hHHHHHHHHHhcCC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 34556677776653 456678999999988877766654
No 306
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.12 E-value=0.00011 Score=73.68 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (599)
+.+.|.|.|.||+||||++++|.-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 667899999999999999999964
No 307
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.12 E-value=2.1e-05 Score=84.17 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=48.6
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||-.... +...+.+..+. ...+++.++||++ +.. -+++...++.....-..+-+|+||.|
T Consensus 182 ~~DvViIDTaGr~~~d-----~~lm~El~~i~--~~~~p~e~lLVld-a~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE-----DSLFEEMLQVA--EAIQPDNIIFVMD-GSI---GQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCcch-----HHHHHHHHHHh--hhcCCcEEEEEec-ccc---ChhHHHHHHHHHhccCCcEEEEECcc
Confidence 4689999999974421 11222232222 1235777766654 443 24455566666554567889999999
Q ss_pred CCCCCCcHHHH
Q 007538 219 LMDKGTNALDV 229 (599)
Q Consensus 219 l~~~~~~~~~~ 229 (599)
....+..+..+
T Consensus 251 ~~argG~aLs~ 261 (429)
T TIGR01425 251 GHAKGGGALSA 261 (429)
T ss_pred CCCCccHHhhh
Confidence 98777655544
No 308
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=1e-05 Score=76.78 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=47.1
Q ss_pred CcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc---CCCeEEEEEecCCcccccHHHHHH----HHH--hCCCCCceE
Q 007538 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE---KPNSVILAISPANQDIATSDAMKL----ARE--VDPTGERTF 211 (599)
Q Consensus 141 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~---~~~~iIL~v~~a~~d~~~~~~l~l----a~~--~d~~g~rti 211 (599)
..+|||.||- ...+.-..+|.+ .+-+|++||+++..+-...+.-.+ +-. ....+.+++
T Consensus 83 ~~~LVD~PGH-------------~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGH-------------SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCc-------------HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 3799999998 445666666776 678888888776644322222222 111 135578999
Q ss_pred EEeccCCCCCCCC
Q 007538 212 GVLTKLDLMDKGT 224 (599)
Q Consensus 212 ~VltK~Dl~~~~~ 224 (599)
+.+||-|+....+
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999986654
No 309
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.11 E-value=4.4e-06 Score=85.90 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=24.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFL 64 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~l 64 (599)
...+|+|||.+|+||||++|+|+|....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~ 147 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIA 147 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcc
Confidence 3458999999999999999999998753
No 310
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.06 E-value=3.9e-06 Score=83.61 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.6
Q ss_pred EECCCCCCHHHHHHHhhCC
Q 007538 43 VVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 43 VvG~~ssGKSSllnaL~G~ 61 (599)
|+|.+||||||+..++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 7999999999999999863
No 311
>PRK12289 GTPase RsgA; Reviewed
Probab=98.04 E-value=8.9e-06 Score=85.49 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
.++|+|.+|+|||||||+|+|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999998754
No 312
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.04 E-value=2.1e-06 Score=84.76 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+-+.|.|.|.|++|||||+++|...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999753
No 313
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.03 E-value=2.9e-06 Score=80.83 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=87.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
-+++|||+..+|||++|-..+-.. ||.+. .||+.-
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~-fp~~y-----vPTVFd--------------------------------------- 39 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNA-FPEEY-----VPTVFD--------------------------------------- 39 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCc-Ccccc-----cCeEEc---------------------------------------
Confidence 379999999999999999998765 46554 443331
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc---ccccHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIATSD 195 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~---d~~~~~ 195 (599)
+-...+.+.......|.||||.|..+- +.++.+ ...++|.++++..-.+. .-..+.
T Consensus 40 --------nys~~v~V~dg~~v~L~LwDTAGqedY----------DrlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~k 98 (198)
T KOG0393|consen 40 --------NYSANVTVDDGKPVELGLWDTAGQEDY----------DRLRPL---SYPQTDVFLLCFSVVSPESFENVKSK 98 (198)
T ss_pred --------cceEEEEecCCCEEEEeeeecCCCccc----------cccccc---CCCCCCEEEEEEEcCChhhHHHHHhh
Confidence 001112232122355899999997432 223322 45677888775433221 122344
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHh----------Ccc--cccC-CCeEEEEcCChhhhccCCC
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE----------GRS--YRLQ-HPWVGIVNRSQADINRNID 257 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~----------~~~--~~l~-~g~~~v~~~s~~~i~~~~~ 257 (599)
|+--.+..-| +.|+|+|.||.|+.+.......+.. +.. ..++ .+|+..++..++++.+.++
T Consensus 99 W~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~ 172 (198)
T KOG0393|consen 99 WIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFD 172 (198)
T ss_pred hhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHH
Confidence 5544555554 6899999999999853311111111 111 1222 4577777777776554443
No 314
>PRK12288 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.5e-05 Score=83.85 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
.++++|.+|+|||||||+|+|...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 589999999999999999999754
No 315
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=1.9e-05 Score=76.15 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCCccCCC---CCCccHHHHHHHHHHHhhcC--------------CCeEEEEEecCCcccccHHHHHHHHH
Q 007538 140 VNLTLIDLPGLTKVAVE---GQPDTIVEDIESMVRSYVEK--------------PNSVILAISPANQDIATSDAMKLARE 202 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~---~q~~~~~~~i~~~~~~yi~~--------------~~~iIL~v~~a~~d~~~~~~l~la~~ 202 (599)
..|+++||||+.+--.. .+| +...+.+.-..|++. .+|++.++-|....+. .-.+.+.+.
T Consensus 104 lkltviDTPGfGDqInN~ncWeP--I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLr-plDieflkr 180 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEP--IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLR-PLDIEFLKR 180 (336)
T ss_pred EEEEEecCCCcccccCccchhHH--HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccC-cccHHHHHH
Confidence 46899999998653211 122 444445544455432 3577676666554442 222334443
Q ss_pred hCCCCCceEEEeccCCCCC
Q 007538 203 VDPTGERTFGVLTKLDLMD 221 (599)
Q Consensus 203 ~d~~g~rti~VltK~Dl~~ 221 (599)
+.. -..++-|+-|.|.+.
T Consensus 181 Lt~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 181 LTE-VVNVVPVIAKADTLT 198 (336)
T ss_pred Hhh-hheeeeeEeeccccc
Confidence 332 257899999999874
No 316
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.99 E-value=1.9e-05 Score=79.18 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
..++++|.+|+|||||+|+|.|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4789999999999999999998754
No 317
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.98 E-value=5.2e-05 Score=89.30 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
.+.++||||||. +.+..+...+...+|+++||++ ++.++. ......+..+...+.++++|+||+|
T Consensus 525 ~p~i~fiDTPGh-------------e~F~~lr~~g~~~aDivlLVVD-a~~Gi~-~qT~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGH-------------EAFTSLRKRGGSLADLAVLVVD-INEGFK-PQTIEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCc-------------HHHHHHHHhhcccCCEEEEEEE-CcccCC-HhHHHHHHHHHHcCCCEEEEEECCC
Confidence 467999999996 4445556667788998887765 444332 2222233333445689999999999
Q ss_pred CCC
Q 007538 219 LMD 221 (599)
Q Consensus 219 l~~ 221 (599)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 318
>PRK13796 GTPase YqeH; Provisional
Probab=97.97 E-value=1.4e-05 Score=84.90 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
..++|||.+|+|||||+|+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 379999999999999999999753
No 319
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=1.3e-05 Score=73.61 Aligned_cols=111 Identities=17% Similarity=0.268 Sum_probs=74.9
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHHHHHHHHhCCCCCceEEEec
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLT 215 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~~~l~la~~~d~~g~rti~Vlt 215 (599)
...|.|||+-|. +..+++...|...+++||.++++.+.+ +.. +.-..+...-+-.|.|.+..+|
T Consensus 68 ~~~l~fwdlgGQ-------------e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGGQ-------------ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCCh-------------HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 467899999997 677999999999999999988776632 211 1222333333456899999999
Q ss_pred cCCCCCCCCc--HHHHHh-Ccc-cccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 216 KLDLMDKGTN--ALDVLE-GRS-YRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 216 K~Dl~~~~~~--~~~~~~-~~~-~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
|-|+-+.-+. ....+. .+. ..-...+.+|++..++++++.+......
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~ 185 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKK 185 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHH
Confidence 9998765431 111121 122 2234578889999999888877665543
No 320
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=3.3e-05 Score=68.27 Aligned_cols=145 Identities=20% Similarity=0.275 Sum_probs=88.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+.+|-..|||||+|-.|.-.. ++|..|
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ip-------------------------------------------- 47 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQ-------SVTTIP-------------------------------------------- 47 (180)
T ss_pred eEEEEecccCCceehhhHHhcCC-------Cccccc--------------------------------------------
Confidence 79999999999999999986442 233333
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH-
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK- 198 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~- 198 (599)
+.||+-+.+. .....+.+||+.|. +.++.+.+.|.....++|+|+++|..|- .+++..
T Consensus 48 --TvGFnvetVt-----ykN~kfNvwdvGGq-------------d~iRplWrhYy~gtqglIFV~Dsa~~dr-~eeAr~E 106 (180)
T KOG0071|consen 48 --TVGFNVETVT-----YKNVKFNVWDVGGQ-------------DKIRPLWRHYYTGTQGLIFVVDSADRDR-IEEARNE 106 (180)
T ss_pred --ccceeEEEEE-----eeeeEEeeeeccCc-------------hhhhHHHHhhccCCceEEEEEeccchhh-HHHHHHH
Confidence 1233322222 12456889999998 6678999999999999999998877643 233322
Q ss_pred HHHHhCC---CCCceEEEeccCCCCCCCC--cHHHHHhCcccccCCCeE--EEEcCChhhhccCCC
Q 007538 199 LAREVDP---TGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWV--GIVNRSQADINRNID 257 (599)
Q Consensus 199 la~~~d~---~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l~~g~~--~v~~~s~~~i~~~~~ 257 (599)
+-+-+.. .....++..||-|+.+.-. ++.+.++-+. --+..|+ +..+.++.+..++++
T Consensus 107 Lh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~-~r~~~W~vqp~~a~~gdgL~egls 171 (180)
T KOG0071|consen 107 LHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER-IRDRNWYVQPSCALSGDGLKEGLS 171 (180)
T ss_pred HHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc-ccCCccEeeccccccchhHHHHHH
Confidence 2222221 2356677789999987543 2444444322 1223454 233344444444443
No 321
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.94 E-value=8.2e-06 Score=75.68 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
..++++|..|+|||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999999753
No 322
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=5.4e-05 Score=86.10 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=78.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCC-------CccceeeecCCCCcccChHHHHHHHH
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDG-------SQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (599)
.|++||.+|+||||++..|.+.-. +.... -.+-+...+.. ...|++....+.....+.+++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~------kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGA------DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCC------CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 578999999999999999998621 22110 00111111110 12223333323222334555444443
Q ss_pred HHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 007538 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (599)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~ 192 (599)
+. ...+++||||||..... ....+.+..+.. ...++-++||+ +++..
T Consensus 260 ~~-----------------------~~~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~e~~LVL-sAt~~-- 306 (767)
T PRK14723 260 AL-----------------------GDKHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPVRRLLLL-NAASH-- 306 (767)
T ss_pred Hh-----------------------cCCCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCCeEEEEE-CCCCc--
Confidence 21 13479999999975421 112222222221 22355555554 45432
Q ss_pred cHHHHHHHHHhCCCC--CceEEEeccCCCCCCCCcHHHHHh
Q 007538 193 TSDAMKLAREVDPTG--ERTFGVLTKLDLMDKGTNALDVLE 231 (599)
Q Consensus 193 ~~~~l~la~~~d~~g--~rti~VltK~Dl~~~~~~~~~~~~ 231 (599)
.++..+.++.+.... ..+=+|+||.|....+..+.++..
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 223333555544321 355688999999988877777654
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.94 E-value=6.7e-06 Score=79.63 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
-+|++||-||+||||||..|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 379999999999999999999864
No 324
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.91 E-value=1.6e-05 Score=84.35 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
..|++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 325
>PRK14974 cell division protein FtsY; Provisional
Probab=97.90 E-value=3.4e-05 Score=80.46 Aligned_cols=82 Identities=30% Similarity=0.398 Sum_probs=50.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||..... .+....++.+.+ .-+++.++||+ ++.. .+++...++.....-.-.-+|+||.|
T Consensus 222 ~~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd~~iLVl-~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 222 GIDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPDLVIFVG-DALA---GNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred CCCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCceEEEee-cccc---chhHHHHHHHHHhcCCCCEEEEeeec
Confidence 4579999999986532 113333333322 23577776655 4443 34566666655443445788999999
Q ss_pred CCCCCCcHHHHHh
Q 007538 219 LMDKGTNALDVLE 231 (599)
Q Consensus 219 l~~~~~~~~~~~~ 231 (599)
....+..+..+..
T Consensus 291 ~~~~~G~~ls~~~ 303 (336)
T PRK14974 291 ADAKGGAALSIAY 303 (336)
T ss_pred CCCCccHHHHHHH
Confidence 9888776665543
No 326
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.90 E-value=7.5e-06 Score=86.91 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=27.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCccccccccccc
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (599)
.-.|.+||-||+||||+||+|+|... .-||+.|
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk-----VsVS~TP 346 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK-----VSVSSTP 346 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce-----eeeecCC
Confidence 45789999999999999999999986 4455555
No 327
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.90 E-value=6.6e-05 Score=70.06 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
|.++++|..+|||||+++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999875
No 328
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.88 E-value=9.4e-05 Score=68.23 Aligned_cols=21 Identities=19% Similarity=0.578 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 007538 41 VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (599)
|.++|..++||||++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999764
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.87 E-value=6.5e-05 Score=69.73 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
..+++++|.+|+||||++|+|.+...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999998653
No 330
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=2.5e-05 Score=82.36 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.|+++|++|+||||++..|.+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 331
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=0.00019 Score=72.73 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=48.7
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHh-hcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSY-VEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~y-i~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++.||||||-.... ...++++..-. ...++-++||+ +++.. .++....++..... ...=+|+||.
T Consensus 154 ~~D~ViIDt~Gr~~~~--------~~~l~el~~~~~~~~~~~~~LVl-~a~~~--~~d~~~~~~~f~~~-~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYRA--------SETVEEMIETMGQVEPDYICLTL-SASMK--SKDMIEIITNFKDI-HIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcCC--------HHHHHHHHHHHhhhCCCeEEEEE-cCccC--HHHHHHHHHHhCCC-CCCEEEEEee
Confidence 4689999999985421 12333332111 22456555554 44432 35666777777663 4556789999
Q ss_pred CCCCCCCcHHHHHh
Q 007538 218 DLMDKGTNALDVLE 231 (599)
Q Consensus 218 Dl~~~~~~~~~~~~ 231 (599)
|.......+.++..
T Consensus 222 Det~~~G~~l~~~~ 235 (270)
T PRK06731 222 DETASSGELLKIPA 235 (270)
T ss_pred cCCCCccHHHHHHH
Confidence 99988776666543
No 332
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=3.1e-05 Score=87.76 Aligned_cols=136 Identities=15% Similarity=0.240 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...-|.|+|+-.+||||+.++|+-.. |...+.. .. . .+..+.|+.+.+.
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k~G------~v----~--------~g~~~~D~~e~Eq------- 57 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISKIG------EV----H--------DGAATMDWMEQEQ------- 57 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCCCc------cc----c--------CCCccCCCcHHHH-------
Confidence 56679999999999999999997432 2222211 00 0 0112233332221
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.++-.+....+.+...+ ...++||||||-.+- ..-+.+.++-.|+.++|+ ++..+...+ .
T Consensus 58 ---eRGITI~saa~s~~~~~--~~~iNlIDTPGHVDF-------------t~EV~rslrvlDgavvVv-daveGV~~Q-T 117 (697)
T COG0480 58 ---ERGITITSAATTLFWKG--DYRINLIDTPGHVDF-------------TIEVERSLRVLDGAVVVV-DAVEGVEPQ-T 117 (697)
T ss_pred ---hcCCEEeeeeeEEEEcC--ceEEEEeCCCCcccc-------------HHHHHHHHHhhcceEEEE-ECCCCeeec-H
Confidence 12333444555544332 467999999998653 233555667778876655 455555333 3
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
....++.+..+.|.++++||+|.+...
T Consensus 118 Etv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 118 ETVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHHHHhhcCCCeEEEEECccccccC
Confidence 346777888899999999999998543
No 333
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.84 E-value=7.9e-05 Score=77.45 Aligned_cols=83 Identities=22% Similarity=0.315 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHH---HHhh-cCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV---RSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~---~~yi-~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~Vl 214 (599)
..++.||||||...... ...+.++.+. ...+ ..++-.+||+ +++. .++++.-++.....-...-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl-~a~~---g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVL-DATT---GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEE-ECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence 46899999999854321 1223333322 2222 2356665655 4443 2334444555443335678999
Q ss_pred ccCCCCCCCCcHHHHH
Q 007538 215 TKLDLMDKGTNALDVL 230 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~ 230 (599)
||.|....+..+.++.
T Consensus 267 TKlD~t~~~G~~l~~~ 282 (318)
T PRK10416 267 TKLDGTAKGGVVFAIA 282 (318)
T ss_pred ECCCCCCCccHHHHHH
Confidence 9999887776666654
No 334
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.81 E-value=8.2e-05 Score=78.16 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
++..|+||-.---|||||+.+|+...--=+..+-+ .....|-.+++++
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v--------------------------~ERvMDSnDlEkE------ 51 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV--------------------------AERVMDSNDLEKE------ 51 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccch--------------------------hhhhcCccchhhh------
Confidence 56689999999999999999998764200000000 0111222222211
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.| -.+-.+.-. | .++...+.||||||-.+.... .+. -++-.|+++|+|++....+....
T Consensus 52 --RG--ITILaKnTa--v-~~~~~~INIvDTPGHADFGGE------VER-------vl~MVDgvlLlVDA~EGpMPQTr- 110 (603)
T COG1217 52 --RG--ITILAKNTA--V-NYNGTRINIVDTPGHADFGGE------VER-------VLSMVDGVLLLVDASEGPMPQTR- 110 (603)
T ss_pred --cC--cEEEeccce--e-ecCCeEEEEecCCCcCCccch------hhh-------hhhhcceEEEEEEcccCCCCchh-
Confidence 11 111111111 2 233578999999998653321 233 33445889888876655543222
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~ 224 (599)
+ ..+..-..|-+-|+|+||+|..+..-
T Consensus 111 F-VlkKAl~~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 111 F-VLKKALALGLKPIVVINKIDRPDARP 137 (603)
T ss_pred h-hHHHHHHcCCCcEEEEeCCCCCCCCH
Confidence 1 23334445788899999999976553
No 335
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=9.9e-05 Score=77.35 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=78.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCC----C---ccceeeecCCCCcccChHHHHHH
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDG----S---QEYAEFLHLPKRRFTDFSMVRKE 110 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~----~---~~~~~~~~~~~~~~~~~~~v~~~ 110 (599)
-..|+++|.+|+||||++..|... +...+. . +.+...+.- . ..|+.....+-....+..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~-----~---V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNR-----T---VGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCC-----e---EEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 446789999999999999999853 222221 0 111111110 1 11222111111112345555444
Q ss_pred HHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCC
Q 007538 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPAN 188 (599)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~ 188 (599)
+..... ....++.||||||-... ..+.+.++ ..+.. .++.++| |.+++
T Consensus 277 l~~l~~--------------------~~~~D~VLIDTAGr~~~--------d~~~l~EL-~~l~~~~~p~~~~L-VLsag 326 (407)
T PRK12726 277 VQYMTY--------------------VNCVDHILIDTVGRNYL--------AEESVSEI-SAYTDVVHPDLTCF-TFSSG 326 (407)
T ss_pred HHHHHh--------------------cCCCCEEEEECCCCCcc--------CHHHHHHH-HHHhhccCCceEEE-ECCCc
Confidence 432210 01368999999998542 12333332 22222 4565545 44443
Q ss_pred cccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHh
Q 007538 189 QDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (599)
Q Consensus 189 ~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~ 231 (599)
.. ..+....++..... ...-+|+||.|.......+..+..
T Consensus 327 ~~--~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 327 MK--SADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred cc--HHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 22 34555566555443 355678999999887776666543
No 336
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.79 E-value=0.00012 Score=70.97 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=32.0
Q ss_pred EEEeccCCCCCC-CCcH---HHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 211 FGVLTKLDLMDK-GTNA---LDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 211 i~VltK~Dl~~~-~~~~---~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
++|+||+|+.+. +.+. .+.++ ....+..++.+++.+++++++.++.+.
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~g~gi~el~~~i~ 192 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAK--KMRGEKPFIFTNLKTKEGLDTVIDWIE 192 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHH--HhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 899999999853 2222 12222 123457899999999999877665544
No 337
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=8.7e-05 Score=79.48 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=90.7
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
.++..+.||-+---|||||..+|+..- | |+-+ +.+.+++.|--++ +.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~-------------------~~~q~q~LDkl~v------ER 104 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELT------G--TIDN-------------------NIGQEQVLDKLQV------ER 104 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHh------C--CCCC-------------------CCchhhhhhhhhh------hh
Confidence 356678999999999999999998542 1 1111 0011111221111 11
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
+ .| -.+....-.+-.......-|.||||||-.+-.. -+.+-+.-++.+||+|+ |+.+...|.
T Consensus 105 E--RG--ITIkaQtasify~~~~~ylLNLIDTPGHvDFs~-------------EVsRslaac~G~lLvVD-A~qGvqAQT 166 (650)
T KOG0462|consen 105 E--RG--ITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG-------------EVSRSLAACDGALLVVD-ASQGVQAQT 166 (650)
T ss_pred h--cC--cEEEeeeeEEEEEcCCceEEEeecCCCcccccc-------------eehehhhhcCceEEEEE-cCcCchHHH
Confidence 1 12 122222222222222245689999999866432 23344556788888765 555553443
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
...+.. ....+-.+|.|+||+|+....-+ ....+.+......-..+.+++..+.++++.++
T Consensus 167 ~anf~l-Afe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~ 228 (650)
T KOG0462|consen 167 VANFYL-AFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLE 228 (650)
T ss_pred HHHHHH-HHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHH
Confidence 333332 23457899999999999754422 12212111111223566778887777665443
No 338
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.78 E-value=6.8e-05 Score=73.26 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|.|+++|..|||||||+++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 339
>PRK00098 GTPase RsgA; Reviewed
Probab=97.76 E-value=9.7e-05 Score=76.34 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
-.++++|.+|+|||||+|+|+|..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999975
No 340
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.73 E-value=2.8e-05 Score=75.15 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=42.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||..... .+..+.++++.. .+ .++-++||+ +++... +.+..+..........=+|+||.|
T Consensus 83 ~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~-~~-~~~~~~LVl-sa~~~~---~~~~~~~~~~~~~~~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRD-----EELLEELKKLLE-AL-NPDEVHLVL-SATMGQ---EDLEQALAFYEAFGIDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSSSTH-----HHHHHHHHHHHH-HH-SSSEEEEEE-EGGGGG---HHHHHHHHHHHHSSTCEEEEESTT
T ss_pred CCCEEEEecCCcchhh-----HHHHHHHHHHhh-hc-CCccceEEE-ecccCh---HHHHHHHHHhhcccCceEEEEeec
Confidence 4689999999985421 112233333222 22 455555544 455432 222222222211223457799999
Q ss_pred CCCCCCcHHHHHh
Q 007538 219 LMDKGTNALDVLE 231 (599)
Q Consensus 219 l~~~~~~~~~~~~ 231 (599)
.........++..
T Consensus 152 et~~~G~~l~~~~ 164 (196)
T PF00448_consen 152 ETARLGALLSLAY 164 (196)
T ss_dssp SSSTTHHHHHHHH
T ss_pred CCCCcccceeHHH
Confidence 9887766665543
No 341
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=8.9e-05 Score=80.79 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-..|+++|..|+||||++..|.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 342
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.00037 Score=75.35 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||..... ....+.+..++.. ...+.-++| |++++.. ..+..+.++.+...+ ..=+|+||+|
T Consensus 299 ~~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~~~~L-Vl~a~~~--~~~l~~~~~~f~~~~-~~~vI~TKlD 368 (424)
T PRK05703 299 DCDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPIDVYL-VLSATTK--YEDLKDIYKHFSRLP-LDGLIFTKLD 368 (424)
T ss_pred CCCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCCeEEE-EEECCCC--HHHHHHHHHHhCCCC-CCEEEEeccc
Confidence 3689999999985421 1122334444441 223334444 4555542 234444555555443 3458899999
Q ss_pred CCCCCCcHHHHHh
Q 007538 219 LMDKGTNALDVLE 231 (599)
Q Consensus 219 l~~~~~~~~~~~~ 231 (599)
.......+.+++.
T Consensus 369 et~~~G~i~~~~~ 381 (424)
T PRK05703 369 ETSSLGSILSLLI 381 (424)
T ss_pred ccccccHHHHHHH
Confidence 9877666666544
No 343
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.71 E-value=0.00012 Score=75.27 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5799999999999999999999864
No 344
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00018 Score=77.20 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=45.3
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.+|||+|..... ....+.+..+. . ...+.-.+||+ +++.. .++..+.++..... .-.=+|+||.|
T Consensus 269 ~~d~VLIDTaGrsqrd-----~~~~~~l~~l~-~-~~~~~~~~LVl-~at~~--~~~~~~~~~~f~~~-~~~~~I~TKlD 337 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-----QMLAEQIAMLS-Q-CGTQVKHLLLL-NATSS--GDTLDEVISAYQGH-GIHGCIITKVD 337 (420)
T ss_pred CCCEEEecCCCCCcch-----HHHHHHHHHHh-c-cCCCceEEEEE-cCCCC--HHHHHHHHHHhcCC-CCCEEEEEeee
Confidence 4678999999985421 11222222221 1 12233444544 55532 23344455555543 34567899999
Q ss_pred CCCCCCcHHHHHh
Q 007538 219 LMDKGTNALDVLE 231 (599)
Q Consensus 219 l~~~~~~~~~~~~ 231 (599)
.......+.+++.
T Consensus 338 Et~~~G~~l~~~~ 350 (420)
T PRK14721 338 EAASLGIALDAVI 350 (420)
T ss_pred CCCCccHHHHHHH
Confidence 9987776666654
No 345
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.66 E-value=0.0001 Score=74.65 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..+++|..|+|||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6889999999999999999985
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00036 Score=74.34 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc-CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++.||||||...... ...+.+..+....-. .+.-.+||+ +++.. ..+....++.... -...=+|+||.
T Consensus 299 ~~D~VLIDTaGr~~rd~-----~~l~eL~~~~~~~~~~~~~e~~LVL-sAt~~--~~~~~~~~~~f~~-~~~~glIlTKL 369 (432)
T PRK12724 299 GSELILIDTAGYSHRNL-----EQLERMQSFYSCFGEKDSVENLLVL-SSTSS--YHHTLTVLKAYES-LNYRRILLTKL 369 (432)
T ss_pred CCCEEEEeCCCCCccCH-----HHHHHHHHHHHhhcCCCCCeEEEEE-eCCCC--HHHHHHHHHHhcC-CCCCEEEEEcc
Confidence 46889999999853211 122223333222111 233344544 45443 2344445554433 34566889999
Q ss_pred CCCCCCCcHHHHHh
Q 007538 218 DLMDKGTNALDVLE 231 (599)
Q Consensus 218 Dl~~~~~~~~~~~~ 231 (599)
|-...+..+..+..
T Consensus 370 DEt~~~G~il~i~~ 383 (432)
T PRK12724 370 DEADFLGSFLELAD 383 (432)
T ss_pred cCCCCccHHHHHHH
Confidence 99888776666543
No 347
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.58 E-value=0.00036 Score=61.95 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=78.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
--+|.+.|--||||+|+|..|.|.+. +.-
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~--~hl------------------------------------------------- 45 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDP--RHL------------------------------------------------- 45 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCCh--hhc-------------------------------------------------
Confidence 34899999999999999999999874 221
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---H
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---S 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~---~ 194 (599)
..+++|+... +.+.....|++||..|. +.++.....|..+.|.+|+|++++...... +
T Consensus 46 --tpT~GFn~k~----v~~~g~f~LnvwDiGGq-------------r~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~ 106 (185)
T KOG0074|consen 46 --TPTNGFNTKK----VEYDGTFHLNVWDIGGQ-------------RGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISE 106 (185)
T ss_pred --cccCCcceEE----EeecCcEEEEEEecCCc-------------cccchhhhhhhhccceEEEEEeCCchHhHHHHHH
Confidence 1223454333 33444578999999997 445777889999999998888754432211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
+-.++..+..-...++.+-.||-|++..
T Consensus 107 el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 107 ELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 2223444444445677788899998654
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00019 Score=73.38 Aligned_cols=146 Identities=27% Similarity=0.384 Sum_probs=79.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc----ccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV----TRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~----Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
+++|+|.-.+|||||+--|+... |--|.|-. =|.|-|++..++..-+.+.- ..+...+..++++.+. .
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~evl--GFd~~g~vVNY~~~~t-----a 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEVL--GFDNRGKVVNYAQNMT-----A 240 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhcc--cccccccccchhhccc-----H
Confidence 79999999999999999998765 44444421 24454555433322111100 0111111222221100 0
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--ccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~ 193 (599)
+ +|....-.-+||+|+.|-.+.-. ..+.. ...| .|++..|+|. |+.. +++
T Consensus 241 E----------------Ei~e~SSKlvTfiDLAGh~kY~~--------TTi~g-LtgY--~Ph~A~LvVs-A~~Gi~~tT 292 (591)
T KOG1143|consen 241 E----------------EIVEKSSKLVTFIDLAGHAKYQK--------TTIHG-LTGY--TPHFACLVVS-ADRGITWTT 292 (591)
T ss_pred H----------------HHHhhhcceEEEeecccchhhhe--------eeeee-cccC--CCceEEEEEE-cCCCCcccc
Confidence 0 11122234579999999744210 00111 1122 2666666554 5543 556
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~ 224 (599)
.+-+.++..++ .|.++++||+|+.++.+
T Consensus 293 rEHLgl~~AL~---iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 293 REHLGLIAALN---IPFFVLVTKMDLVDRQG 320 (591)
T ss_pred HHHHHHHHHhC---CCeEEEEEeeccccchh
Confidence 77777777765 69999999999998754
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.53 E-value=0.0017 Score=66.14 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHH---HHhh-cCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV---RSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~---~~yi-~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~Vl 214 (599)
..++.||||||..... ....+.++.+. ...+ ..++.++||+. ++. ..+++..+......-...-+|+
T Consensus 154 ~~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl~-a~~---~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVLD-ATT---GQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred CCCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEEE-CCC---CHHHHHHHHHHHhhCCCCEEEE
Confidence 4789999999985421 11222233222 2111 13676766554 443 3344444444333234577899
Q ss_pred ccCCCCCCCCcHHHHHh
Q 007538 215 TKLDLMDKGTNALDVLE 231 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~ 231 (599)
||+|....+..+..+..
T Consensus 225 TKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAY 241 (272)
T ss_pred EccCCCCCccHHHHHHH
Confidence 99999887776665543
No 350
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.0005 Score=75.86 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=83.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-|-++|+|+..+|||-||..|-|.++--...|..| ..-+..|.+.+.++.. +.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggit----------------------qqIgAt~fp~~ni~e~----tk 527 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGIT----------------------QQIGATYFPAENIREK----TK 527 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccccccee----------------------eeccccccchHHHHHH----HH
Confidence 679999999999999999999998765222233222 1122333344444332 22
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--~ 194 (599)
.+...++ ..-..|.+.+|||||. +.+.++-......+|.+||+|+-. .++.. -
T Consensus 528 ~~~~~~K-----------~~~kvPg~lvIdtpgh-------------EsFtnlRsrgsslC~~aIlvvdIm-hGlepqti 582 (1064)
T KOG1144|consen 528 ELKKDAK-----------KRLKVPGLLVIDTPGH-------------ESFTNLRSRGSSLCDLAILVVDIM-HGLEPQTI 582 (1064)
T ss_pred HHHhhhh-----------hhcCCCeeEEecCCCc-------------hhhhhhhhccccccceEEEEeehh-ccCCcchh
Confidence 2221111 0123688999999995 566777777778899999987644 34433 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLM 220 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~ 220 (599)
+.+.++ .....+.|+.+||+|.+
T Consensus 583 ESi~lL---R~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 583 ESINLL---RMRKTPFIVALNKIDRL 605 (1064)
T ss_pred HHHHHH---HhcCCCeEEeehhhhhh
Confidence 344444 44568999999999976
No 351
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00032 Score=75.94 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=60.6
Q ss_pred cCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--------cHHHHHHHHHhCCCC
Q 007538 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--------TSDAMKLAREVDPTG 207 (599)
Q Consensus 136 ~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--------~~~~l~la~~~d~~g 207 (599)
.+.-..+||+|.||. + ..+.+|+. -+..+|..||||+.....|+ +.+-..+++.+. -
T Consensus 251 es~~~~~tliDaPGh-k-----------dFi~nmi~-g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i 315 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGH-K-----------DFIPNMIS-GASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--I 315 (603)
T ss_pred ecCceeEEEecCCCc-c-----------ccchhhhc-cccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--c
Confidence 355678999999994 2 22233333 24467888887765433221 123334555544 3
Q ss_pred CceEEEeccCCCCCCCCcHHHHHhCcc----------cccCCCeEEEEcCChhhhc
Q 007538 208 ERTFGVLTKLDLMDKGTNALDVLEGRS----------YRLQHPWVGIVNRSQADIN 253 (599)
Q Consensus 208 ~rti~VltK~Dl~~~~~~~~~~~~~~~----------~~l~~g~~~v~~~s~~~i~ 253 (599)
...|+++||+|+++=..+-.+.+.+.. ..-...|++++..+++++.
T Consensus 316 ~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 316 SQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred ceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 578999999999964433222222221 1123478999988887653
No 352
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.0024 Score=62.18 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=56.6
Q ss_pred CCcEEEeC-CCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-HHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDL-PGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-AMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDt-PGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~-~l~la~~~d~~g~rti~VltK~ 217 (599)
.++.+||| .|+ +..-+.-++..|.+|.|++|+...+.+++ ..+++.++. -+|+.+|+||+
T Consensus 134 ~e~VivDtEAGi----------------EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv 195 (255)
T COG3640 134 YEVVIVDTEAGI----------------EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKV 195 (255)
T ss_pred CcEEEEecccch----------------hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeec
Confidence 57888888 676 33344456788998888877665554433 334444443 28999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChh
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQA 250 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~ 250 (599)
|.. . ..+......+++.+.++.+.+.+
T Consensus 196 ~e~--e----~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 196 DEE--E----ELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred cch--h----HHHHhhhhccCCeEEEEccCCHH
Confidence 865 1 12333345667778888887654
No 353
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00056 Score=74.66 Aligned_cols=134 Identities=17% Similarity=0.265 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
....|+++|.-.+|||+|+..|.+... |... .+.+..++-++... . +.
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~l~-----------------~--------E~- 174 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDTLF-----------------Y--------EQ- 174 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecc-cccc-----ccccccccccccch-----------------h--------hH-
Confidence 344688999999999999999998764 4432 22222221111000 0 01
Q ss_pred hhcCCCCCcCCccEEEEEecCCC--CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNV--VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~--~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
.++.++-..++.+-..+... .-++++||||-... .+-+...++-+|.++|+++.+..-.-+.
T Consensus 175 ---eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF-------------~DE~ta~l~~sDgvVlvvDv~EGVmlnt 238 (971)
T KOG0468|consen 175 ---ERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF-------------SDETTASLRLSDGVVLVVDVAEGVMLNT 238 (971)
T ss_pred ---hcCceEeecceEEEEecCcCceeeeeeecCCCcccc-------------hHHHHHHhhhcceEEEEEEcccCceeeH
Confidence 12344445566654444333 45889999997542 2223345667899988887665322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLM 220 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~ 220 (599)
-++.+..-....++.+|+||+|.+
T Consensus 239 --Er~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 239 --ERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred --HHHHHHHHhccCcEEEEEehhHHH
Confidence 234555555678999999999974
No 354
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.00028 Score=76.29 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=48.4
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl 219 (599)
.++.||||||-.... ++..+.+..+. .+-.++.++|++. +.. .+++...++.....-..+-+|+||.|.
T Consensus 176 ~DvVIIDTAGr~~~d-----~~lm~El~~l~--~~~~pdevlLVvd-a~~---gq~av~~a~~F~~~l~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALE-----EDLIEEMKEIK--EAVKPDEVLLVID-ATI---GQQAKNQAKAFHEAVGIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHHH--HHhcccceeEEEe-ccc---cHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 388999999975421 11222222221 1335777766655 443 256667777765443456778999999
Q ss_pred CCCCCcHHHHH
Q 007538 220 MDKGTNALDVL 230 (599)
Q Consensus 220 ~~~~~~~~~~~ 230 (599)
...+..+..+.
T Consensus 245 ~a~~G~~ls~~ 255 (437)
T PRK00771 245 TAKGGGALSAV 255 (437)
T ss_pred CCcccHHHHHH
Confidence 87776665554
No 355
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.46 E-value=0.00083 Score=81.80 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCccc
Q 007538 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (599)
Q Consensus 6 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (599)
.+-.+-.++++++..++...... ......||=.+|||.++|||||+|+.- |.+| |-.
T Consensus 82 ~~~~l~~~~~~a~~~Lk~~~~~~---~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 82 EIRELRARFNEALALLKRSRLGG---RRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHHhhccccC---chhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 44556778888888887554211 122358999999999999999999998 7775 544
No 356
>PRK10867 signal recognition particle protein; Provisional
Probab=97.45 E-value=0.00083 Score=72.50 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=48.3
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||-.... +.....+..+. ..+ .++.++||+. +.. .+++...++.....-..+-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~~d-----~~lm~eL~~i~-~~v-~p~evllVld-a~~---gq~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHID-----EELMDELKAIK-AAV-NPDEILLVVD-AMT---GQDAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcccC-----HHHHHHHHHHH-Hhh-CCCeEEEEEe-ccc---HHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4789999999975421 11222222222 223 5666666555 432 46677777776644445678899999
Q ss_pred CCCCCCcHHHHH
Q 007538 219 LMDKGTNALDVL 230 (599)
Q Consensus 219 l~~~~~~~~~~~ 230 (599)
-...+..+..+.
T Consensus 252 ~~~rgG~alsi~ 263 (433)
T PRK10867 252 GDARGGAALSIR 263 (433)
T ss_pred CcccccHHHHHH
Confidence 876665555543
No 357
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0014 Score=69.71 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=45.1
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||..... .. ....+..+... ...+.-++| |.+++.. ..+..+.++...+. ..+=+|+||.|
T Consensus 254 ~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~-~~~~~e~~L-Vlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPKD----FM-KLAEMKELLNA-CGRDAEFHL-AVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCccC----HH-HHHHHHHHHHh-cCCCCeEEE-EEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEecc
Confidence 4689999999985411 00 11222222222 222223445 4555543 23333455555432 35567899999
Q ss_pred CCCCCCcHHHHHh
Q 007538 219 LMDKGTNALDVLE 231 (599)
Q Consensus 219 l~~~~~~~~~~~~ 231 (599)
-...+..+.+++.
T Consensus 324 et~~~G~~l~~~~ 336 (388)
T PRK12723 324 ETTCVGNLISLIY 336 (388)
T ss_pred CCCcchHHHHHHH
Confidence 9988777766654
No 358
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.43 E-value=0.00037 Score=65.86 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.|+||||..... .+....+..+.. ...++.+++++.+ .. ..+..+.+........-.-+|+||+|
T Consensus 82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l~~--~~~~~~~~lVv~~-~~---~~~~~~~~~~~~~~~~~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQID-----ENLMEELKKIKR--VVKPDEVLLVVDA-MT---GQDAVNQAKAFNEALGITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhh-----HHHHHHHHHHHh--hcCCCeEEEEEEC-CC---ChHHHHHHHHHHhhCCCCEEEEECCc
Confidence 4678999999985321 112222322221 2347777776654 32 23344455544322225778899999
Q ss_pred CCCCCCcHHHH
Q 007538 219 LMDKGTNALDV 229 (599)
Q Consensus 219 l~~~~~~~~~~ 229 (599)
.........++
T Consensus 151 ~~~~~g~~~~~ 161 (173)
T cd03115 151 GDARGGAALSI 161 (173)
T ss_pred CCCCcchhhhh
Confidence 98877655443
No 359
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00075 Score=71.11 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=63.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCC-CceEEEeccCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFGVLTKLD 218 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g-~rti~VltK~D 218 (599)
..++|||.||. .+.+.+|+.. +...|+.+|+| +++..+..+. .+.+.-+|--| .+.++|+||+|
T Consensus 50 ~~~~fIDvpgh------------~~~i~~miag-~~~~d~alLvV-~~deGl~~qt-gEhL~iLdllgi~~giivltk~D 114 (447)
T COG3276 50 GVMGFIDVPGH------------PDFISNLLAG-LGGIDYALLVV-AADEGLMAQT-GEHLLILDLLGIKNGIIVLTKAD 114 (447)
T ss_pred CceEEeeCCCc------------HHHHHHHHhh-hcCCceEEEEE-eCccCcchhh-HHHHHHHHhcCCCceEEEEeccc
Confidence 47899999997 2455555533 34467776655 5554442222 22222334334 45699999999
Q ss_pred CCCCCCc---HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 219 LMDKGTN---ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 219 l~~~~~~---~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
..++... ..+++.... --...++.++..++++++++...+..+.
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 9975421 123333222 2234568888888888887776665554
No 360
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.0005 Score=72.67 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=94.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+.....+|.+---|||||-.+|+..- +..+. .++++.+-+.++
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~-------------------------------Rem~~Q~LDsMd 50 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSE-------------------------------REMRAQVLDSMD 50 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcCh-------------------------------HHHHHHhhhhhh
Confidence 34456788888999999999998642 11111 122222222222
Q ss_pred hhcCCCCCcCCccEEEEEecC--CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
-...+|-.+-...+++..... ....|.||||||-.+-.-+ +.+.+..+...+|+| +|.+++..|
T Consensus 51 iERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalLvV-DAsQGveAQ 116 (603)
T COG0481 51 IERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALLVV-DASQGVEAQ 116 (603)
T ss_pred hHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEEEE-ECccchHHH
Confidence 222223334445566554443 3467899999998654321 222334556666755 466666444
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCccccc-CCCeEEEEcCChhhhccCCCHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRL-QHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.....-..+ ..+--+|-|+||+|+....-+ ..+-++. ...+ ...-+.+++.++.++++.++.+-
T Consensus 117 TlAN~YlAl-e~~LeIiPViNKIDLP~Adpervk~eIe~-~iGid~~dav~~SAKtG~gI~~iLe~Iv 182 (603)
T COG0481 117 TLANVYLAL-ENNLEIIPVLNKIDLPAADPERVKQEIED-IIGIDASDAVLVSAKTGIGIEDVLEAIV 182 (603)
T ss_pred HHHHHHHHH-HcCcEEEEeeecccCCCCCHHHHHHHHHH-HhCCCcchheeEecccCCCHHHHHHHHH
Confidence 433332223 346789999999999765432 1211111 1111 12457788888888876554443
No 361
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00059 Score=71.50 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=49.1
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
...-+.|+||||--+-+ +=+++-+.-.|+.+.|++.| .++ ....+++.+-..-.+.|++-.+||+
T Consensus 79 ~~~~iNLLDTPGHeDFS-------------EDTYRtLtAvDsAvMVIDaA-KGi-E~qT~KLfeVcrlR~iPI~TFiNKl 143 (528)
T COG4108 79 ADCLVNLLDTPGHEDFS-------------EDTYRTLTAVDSAVMVIDAA-KGI-EPQTLKLFEVCRLRDIPIFTFINKL 143 (528)
T ss_pred CCeEEeccCCCCccccc-------------hhHHHHHHhhheeeEEEecc-cCc-cHHHHHHHHHHhhcCCceEEEeecc
Confidence 35668899999974422 22344455678887766554 455 4556677777777889999999999
Q ss_pred CCCCC
Q 007538 218 DLMDK 222 (599)
Q Consensus 218 Dl~~~ 222 (599)
|....
T Consensus 144 DR~~r 148 (528)
T COG4108 144 DREGR 148 (528)
T ss_pred ccccC
Confidence 98644
No 362
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.27 E-value=0.001 Score=69.99 Aligned_cols=153 Identities=17% Similarity=0.235 Sum_probs=86.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCccc---ccccc-cccEEEEEEecCC--CCccceeeecCCCCcccChHHHHHHH
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG---SGIVT-RRPLVLQLHKTED--GSQEYAEFLHLPKRRFTDFSMVRKEI 111 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~---~~~~T-r~p~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~i 111 (599)
-..|++||+.|+||||.|--|..+-++-.+ -++.| .+- +... .-..|+..+..|-....++.++..++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY------RIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY------RIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc------hhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 446889999999999999988776320011 11111 100 0000 01345556666666666777776665
Q ss_pred HHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCC-CeEEEEEecCCcc
Q 007538 112 QDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP-NSVILAISPANQD 190 (599)
Q Consensus 112 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~-~~iIL~v~~a~~d 190 (599)
..-. ..++.||||.|-... +...+.+ ...|+... +.-+.+|.+++.-
T Consensus 277 ~~l~-----------------------~~d~ILVDTaGrs~~--------D~~~i~e-l~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 277 EALR-----------------------DCDVILVDTAGRSQY--------DKEKIEE-LKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred HHhh-----------------------cCCEEEEeCCCCCcc--------CHHHHHH-HHHHHhccccceEEEEEecCcc
Confidence 4321 358999999998542 1233333 33454443 4344556666642
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHh
Q 007538 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (599)
Q Consensus 191 ~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~ 231 (599)
..+.......+..-+... +++||.|....-.+...++.
T Consensus 325 --~~dlkei~~~f~~~~i~~-~I~TKlDET~s~G~~~s~~~ 362 (407)
T COG1419 325 --YEDLKEIIKQFSLFPIDG-LIFTKLDETTSLGNLFSLMY 362 (407)
T ss_pred --hHHHHHHHHHhccCCcce-eEEEcccccCchhHHHHHHH
Confidence 344445555555544333 56899998876555666543
No 363
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.26 E-value=0.003 Score=68.24 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=49.3
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||..... +.....+..+.. .-.++.++||+. +.. .+++...++.....-.-+=+|+||+|
T Consensus 182 ~~DvVIIDTaGr~~~d-----~~l~~eL~~i~~--~~~p~e~lLVvd-a~t---gq~~~~~a~~f~~~v~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQID-----EELMEELAAIKE--ILNPDEILLVVD-AMT---GQDAVNTAKTFNERLGLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccccC-----HHHHHHHHHHHH--hhCCceEEEEEe-ccc---hHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4689999999975421 112233333322 335777767665 442 46777777776644345678899999
Q ss_pred CCCCCCcHHHHH
Q 007538 219 LMDKGTNALDVL 230 (599)
Q Consensus 219 l~~~~~~~~~~~ 230 (599)
-...+..+..+.
T Consensus 251 ~~~~~G~~lsi~ 262 (428)
T TIGR00959 251 GDARGGAALSVR 262 (428)
T ss_pred CcccccHHHHHH
Confidence 776665555543
No 364
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00068 Score=68.40 Aligned_cols=171 Identities=18% Similarity=0.266 Sum_probs=86.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
.|..||.-.-|||||..||+|.-. -+ ..--.++-+.++|.-.+.. .|.+-. +
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT-~~-hseElkRgitIkLGYAd~~--i~kC~~------------------------c 63 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT-DR-HSEELKRGITIKLGYADAK--IYKCPE------------------------C 63 (415)
T ss_pred Eeeeeeecccchhhheehhhceee-ec-hhHHHhcCcEEEeccccCc--eEeCCC------------------------C
Confidence 588999999999999999999732 11 1112344445554322111 000000 0
Q ss_pred CCCCCcCCccEEEEEec---CCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcC---CCeEEEEEecCCccccc
Q 007538 120 GKTKQISPIPIHLSIYS---PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK---PNSVILAISPANQDIAT 193 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~---~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~---~~~iIL~v~~a~~d~~~ 193 (599)
+....++..+.+ ..++ .-...++|||.||- +. +.-..+.. -|..+|+ ++||.....
T Consensus 64 ~~~~~y~~~~~C-~~cg~~~~l~R~VSfVDaPGH-------------e~---LMATMLsGAAlMDgAlLv-IaANEpcPQ 125 (415)
T COG5257 64 YRPECYTTEPKC-PNCGAETELVRRVSFVDAPGH-------------ET---LMATMLSGAALMDGALLV-IAANEPCPQ 125 (415)
T ss_pred CCCcccccCCCC-CCCCCCccEEEEEEEeeCCch-------------HH---HHHHHhcchhhhcceEEE-EecCCCCCC
Confidence 000001111100 0000 11246889999996 22 22223333 3556564 456654432
Q ss_pred ---HHHHHHHHHhCCCCCceEEEeccCCCCCCCCc------HHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 194 ---SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN------ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 194 ---~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~------~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.+-+ +|-++-. -+.+|+|-||+|++++..- +.+++++ .+..+.+.+++++....+++.+++.+
T Consensus 126 PQT~EHl-~AleIig-ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkG-t~Ae~aPIIPiSA~~~~NIDal~e~i 197 (415)
T COG5257 126 PQTREHL-MALEIIG-IKNIIIVQNKIDLVSRERALENYEQIKEFVKG-TVAENAPIIPISAQHKANIDALIEAI 197 (415)
T ss_pred CchHHHH-HHHhhhc-cceEEEEecccceecHHHHHHHHHHHHHHhcc-cccCCCceeeehhhhccCHHHHHHHH
Confidence 2222 4444432 3688999999999976531 2333333 23445577777776666655444433
No 365
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0013 Score=65.69 Aligned_cols=130 Identities=17% Similarity=0.336 Sum_probs=79.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
.|..||...-|||||.-||++. ..-.+ ...+.+++++.+..++.
T Consensus 14 NigtiGHvdHGKTTLtaAit~~-la~~~------------------------------~~~~~~y~~id~aPeEk----- 57 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTV-LAKKG------------------------------GAEAKAYDQIDNAPEEK----- 57 (394)
T ss_pred EEEEeccccCchhhHHHHHHHH-HHhhc------------------------------cccccchhhhccCchHh-----
Confidence 5889999999999999999975 11111 11222333333222211
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc-cHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-TSDAMK 198 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~-~~~~l~ 198 (599)
..+++-+.-.++... ...++..||.||- .+.+++|+....+ .|..||+|..+..... +.+-+-
T Consensus 58 --~rGITIntahveyet-~~rhyahVDcPGH------------aDYvKNMItgAaq-mDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 58 --ARGITINTAHVEYET-ANRHYAHVDCPGH------------ADYVKNMITGAAQ-MDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred --hcCceeccceeEEec-CCceEEeccCCCh------------HHHHHHHhhhHHh-cCccEEEEEcCCCCCCcchhhhh
Confidence 122322233333323 3578999999996 2567777776654 4556687776655443 334455
Q ss_pred HHHHhCCCCCceEEEeccCCCCCCC
Q 007538 199 LAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 199 la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
+++++-- .++++++||+|+++..
T Consensus 122 larqvGv--p~ivvflnK~Dmvdd~ 144 (394)
T COG0050 122 LARQVGV--PYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhcCC--cEEEEEEecccccCcH
Confidence 7777642 4788889999999854
No 366
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0012 Score=58.86 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=69.2
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---ccHHHHHHHHHhCCCCCceEEEe
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~---~~~~~l~la~~~d~~g~rti~Vl 214 (599)
....+.+||+-|.++ ++-..+.|..+.+++|.||+.++.|- +..+-..+.++-.-.+...+++.
T Consensus 60 KNLk~~vwdLggqtS-------------irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTS-------------IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCccc-------------ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 356789999999855 36678899999999999999888653 22333344444334467788899
Q ss_pred ccCCCCCCCCc--HHHHHhCcccccC---CCeEEEEcCChhhhccCCCHHHHH
Q 007538 215 TKLDLMDKGTN--ALDVLEGRSYRLQ---HPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 215 tK~Dl~~~~~~--~~~~~~~~~~~l~---~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
||.|....-+. +...+. ...|+ ...+..++..+.+++...+.+..-
T Consensus 127 nKqD~~~~~t~~E~~~~L~--l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 127 NKQDYSGALTRSEVLKMLG--LQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRP 177 (182)
T ss_pred ccccchhhhhHHHHHHHhC--hHHHhhheeEEEeeccccccCCcHHHHHHHHH
Confidence 99998654332 222211 11111 334556666677776655555443
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.0015 Score=71.34 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.|++||.+|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 36889999999999999999985
No 368
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0012 Score=70.73 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=44.9
Q ss_pred ecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCC-CceEEE
Q 007538 135 YSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFGV 213 (599)
Q Consensus 135 ~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g-~rti~V 213 (599)
.+.....+||...|.= + .++ + .-.+-+|.++| .+++|.++.- +.+.++.-+.+.| .|++||
T Consensus 108 vsgK~RRiTflEcp~D-----------l-~~m---i-DvaKIaDLVlL-lIdgnfGfEM-ETmEFLnil~~HGmPrvlgV 169 (1077)
T COG5192 108 VSGKTRRITFLECPSD-----------L-HQM---I-DVAKIADLVLL-LIDGNFGFEM-ETMEFLNILISHGMPRVLGV 169 (1077)
T ss_pred eecceeEEEEEeChHH-----------H-HHH---H-hHHHhhheeEE-EeccccCcee-hHHHHHHHHhhcCCCceEEE
Confidence 3444577999998831 1 111 1 12234676655 5678877733 4445555555655 689999
Q ss_pred eccCCCCCCCC
Q 007538 214 LTKLDLMDKGT 224 (599)
Q Consensus 214 ltK~Dl~~~~~ 224 (599)
+|..|+....+
T Consensus 170 ~ThlDlfk~~s 180 (1077)
T COG5192 170 VTHLDLFKNPS 180 (1077)
T ss_pred EeecccccChH
Confidence 99999987654
No 369
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.13 E-value=0.00041 Score=71.95 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=26.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~ 68 (599)
-++.|||-||+|||||+|+|......|+|.
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k~C~vg~ 282 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRKACNVGN 282 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhccccCCC
Confidence 379999999999999999999887755554
No 370
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0025 Score=65.23 Aligned_cols=178 Identities=15% Similarity=0.206 Sum_probs=94.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.+-+.+-+|.---|||||+-+|+.-.- .-.+=++..... ..-.+.....-.||+-+-+-++.+.+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk----------~i~eDQla~l~~-----dS~~~~t~g~~~D~ALLvDGL~AERE 69 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTK----------AIYEDQLASLER-----DSKRKGTQGEKIDLALLVDGLEAERE 69 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcch----------hhhHHHHHHHhc-----ccccccCCCCccchhhhhhhhHHHHh
Confidence 456899999999999999999986421 000000000000 00001112234577777777776655
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~- 195 (599)
+ | ++-+.-. ..++.....+.+.||||- ++..++|+.. ...++..||+|+ |...+-.|.
T Consensus 70 Q--G----ITIDVAY-RyFsT~KRkFIiADTPGH------------eQYTRNMaTG-ASTadlAIlLVD-AR~Gvl~QTr 128 (431)
T COG2895 70 Q--G----ITIDVAY-RYFSTEKRKFIIADTPGH------------EQYTRNMATG-ASTADLAILLVD-ARKGVLEQTR 128 (431)
T ss_pred c--C----ceEEEEe-eecccccceEEEecCCcH------------HHHhhhhhcc-cccccEEEEEEe-cchhhHHHhH
Confidence 4 2 2222222 345556688999999996 1334455433 334677777664 554442222
Q ss_pred HHHHHHHhCCCCC-ceEEEeccCCCCCCCCcHHHHHh----CcccccCC---CeEEEEcCChhhh
Q 007538 196 AMKLAREVDPTGE-RTFGVLTKLDLMDKGTNALDVLE----GRSYRLQH---PWVGIVNRSQADI 252 (599)
Q Consensus 196 ~l~la~~~d~~g~-rti~VltK~Dl~~~~~~~~~~~~----~~~~~l~~---g~~~v~~~s~~~i 252 (599)
-....-.+ -|. .+++.+||+||++-.++..+-+. .....|+. -|+++++..+.++
T Consensus 129 RHs~I~sL--LGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 129 RHSFIASL--LGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred HHHHHHHH--hCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 11222222 244 56777999999986654322111 11222222 4677777766654
No 371
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.001 Score=65.74 Aligned_cols=134 Identities=20% Similarity=0.329 Sum_probs=78.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
..|..||..+-|||||++.|....| ++.+|+..---+.|+.. +. +
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~---Ty--------------e--------------- 87 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQAN---TY--------------E--------------- 87 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecc---hh--------------h---------------
Confidence 3689999999999999999999876 22223221101111110 00 0
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCC-CccHHHHHHHHHHHhhcC---------------CCeEEE
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQ-PDTIVEDIESMVRSYVEK---------------PNSVIL 182 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q-~~~~~~~i~~~~~~yi~~---------------~~~iIL 182 (599)
.- .+.-...|++|||-|+.+--..+. -.-+.+.+......|++. -++++.
T Consensus 88 ------lq--------EsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLY 153 (406)
T KOG3859|consen 88 ------LQ--------ESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLY 153 (406)
T ss_pred ------hh--------hcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence 00 011134689999999976332221 122455555555555432 356677
Q ss_pred EEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 183 ~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
++.|....+..-+ +-..+.+|. ...+|-||-|.|.+...
T Consensus 154 FI~PTGH~LKslD-Lvtmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 154 FISPTGHSLKSLD-LVTMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred EecCCCcchhHHH-HHHHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 7888777663333 334456664 57889999999988654
No 372
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.09 E-value=0.0013 Score=66.34 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-+.+.|||-||+|||||+||+--.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHH
Confidence 4568999999999999999998654
No 373
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0035 Score=57.44 Aligned_cols=115 Identities=14% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+--++++.|--|||||||++.|=..+. +.-.+|--|| .
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPT-----------S---------------------------- 56 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPT-----------S---------------------------- 56 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCC-----------h----------------------------
Confidence 556899999999999999999965442 1112333330 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
..+. | .+...|-+|+.|- .+-+...+.|+..+++|+..|+.+.... -+++
T Consensus 57 -----------E~l~--I---g~m~ftt~DLGGH-------------~qArr~wkdyf~~v~~iv~lvda~d~er-~~es 106 (193)
T KOG0077|consen 57 -----------EELS--I---GGMTFTTFDLGGH-------------LQARRVWKDYFPQVDAIVYLVDAYDQER-FAES 106 (193)
T ss_pred -----------HHhe--e---cCceEEEEccccH-------------HHHHHHHHHHHhhhceeEeeeehhhHHH-hHHH
Confidence 0111 1 1456889999997 5667889999999999988887665432 1111
Q ss_pred ---HHHH-HHhCCCCCceEEEeccCCCCCCC
Q 007538 197 ---MKLA-REVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 197 ---l~la-~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
++.. ....-...|.++..||+|....-
T Consensus 107 ~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 107 KKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 1111 11111357899999999987544
No 374
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.87 E-value=0.019 Score=58.60 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
....|.|+|.+||||||||+.+++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999875
No 375
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.009 Score=60.90 Aligned_cols=90 Identities=20% Similarity=0.381 Sum_probs=51.4
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCC---eEEEEEecCCcccccH--HHHHHHHHhCCCCCceEEEe
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN---SVILAISPANQDIATS--DAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~---~iIL~v~~a~~d~~~~--~~l~la~~~d~~g~rti~Vl 214 (599)
.+++|||.||- ..+++.-|..+. ..+|+ +++.....++ +.+-+...+ -...++|+
T Consensus 70 lq~tlvDCPGH----------------asLIRtiiggaqiiDlm~lv-iDv~kG~QtQtAEcLiig~~~---c~klvvvi 129 (522)
T KOG0461|consen 70 LQFTLVDCPGH----------------ASLIRTIIGGAQIIDLMILV-IDVQKGKQTQTAECLIIGELL---CKKLVVVI 129 (522)
T ss_pred ceeEEEeCCCc----------------HHHHHHHHhhhheeeeeeEE-Eehhcccccccchhhhhhhhh---ccceEEEE
Confidence 56799999997 445555555554 44444 4454444444 344333333 35678999
Q ss_pred ccCCCCCCCCcHHHH----------HhCcccccCCCeEEEEcCCh
Q 007538 215 TKLDLMDKGTNALDV----------LEGRSYRLQHPWVGIVNRSQ 249 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~----------~~~~~~~l~~g~~~v~~~s~ 249 (599)
||+|...++....++ +++....-..+.+.|++..+
T Consensus 130 nkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 130 NKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADG 174 (522)
T ss_pred eccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCC
Confidence 999999876432111 11112222346777777766
No 376
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.80 E-value=0.001 Score=65.07 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=24.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
-++.+||-||+||||++..|+|.. -|+.+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasy 89 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAY 89 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-Cccccc
Confidence 378899999999999999999974 344443
No 377
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0099 Score=62.94 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=53.6
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHH-HhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~-~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++.||||.|=... ..+.+.++.. .-+-+|+-++||++... -|++...|+..+..-.=|=+|+||.
T Consensus 182 ~~DvvIvDTAGRl~i--------de~Lm~El~~Ik~~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI--------DEELMDELKEIKEVINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc--------cHHHHHHHHHHHhhcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEcc
Confidence 468999999996542 1233343322 12446787877776544 5788888988887767778899999
Q ss_pred CCCCCCCcHHH
Q 007538 218 DLMDKGTNALD 228 (599)
Q Consensus 218 Dl~~~~~~~~~ 228 (599)
|--.+|.-+..
T Consensus 250 DGdaRGGaALS 260 (451)
T COG0541 250 DGDARGGAALS 260 (451)
T ss_pred cCCCcchHHHh
Confidence 98877765443
No 378
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.49 E-value=0.0035 Score=56.69 Aligned_cols=113 Identities=16% Similarity=0.264 Sum_probs=67.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|.++|+...||+|++=..+|..+ ++ +...
T Consensus 22 kv~llGD~qiGKTs~mvkYV~~~~------------------------------------------------de--~~~q 51 (205)
T KOG1673|consen 22 KVGLLGDAQIGKTSLMVKYVQNEY------------------------------------------------DE--EYTQ 51 (205)
T ss_pred EEEeecccccCceeeehhhhcchh------------------------------------------------HH--HHHH
Confidence 899999999999999999988754 00 0111
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---HHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---SDA 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~---~~~ 196 (599)
..|..|.++.+.+. +. ...+++||+.|. +...+++.-....+-+|++.. +-...... -+|
T Consensus 52 ~~GvN~mdkt~~i~--~t-~IsfSIwdlgG~-------------~~~~n~lPiac~dsvaIlFmF-DLt~r~TLnSi~~W 114 (205)
T KOG1673|consen 52 TLGVNFMDKTVSIR--GT-DISFSIWDLGGQ-------------REFINMLPIACKDSVAILFMF-DLTRRSTLNSIKEW 114 (205)
T ss_pred HhCccceeeEEEec--ce-EEEEEEEecCCc-------------HhhhccCceeecCcEEEEEEE-ecCchHHHHHHHHH
Confidence 12344555554432 22 245789999997 344555544445555554443 33222212 345
Q ss_pred HHHHHHhCCCCCceEEEeccCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLM 220 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~ 220 (599)
.+-|+.......| |+|.||.|..
T Consensus 115 Y~QAr~~NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 115 YRQARGLNKTAIP-ILVGTKYDLF 137 (205)
T ss_pred HHHHhccCCccce-EEeccchHhh
Confidence 5566655554444 6789999975
No 379
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.44 E-value=0.0085 Score=57.21 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.+.|+|+-||||||..+++..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eEEEEccCCCCcchHHHHHHH
Confidence 367999999999999999964
No 380
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.41 E-value=0.0024 Score=64.02 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCe
Q 007538 162 IVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPW 241 (599)
Q Consensus 162 ~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~ 241 (599)
+.+....+++.|+++.|.+++|++..+.+.......++...+...+.+.++|+||+|+.+......+.... ....+..+
T Consensus 22 i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~-~~~~g~~v 100 (245)
T TIGR00157 22 IAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDI-YRNIGYQV 100 (245)
T ss_pred EecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHH-HHHCCCeE
Confidence 44555677788999999988876544333222222222222333578999999999997543211111111 11244567
Q ss_pred EEEEcCChhhhccCCC
Q 007538 242 VGIVNRSQADINRNID 257 (599)
Q Consensus 242 ~~v~~~s~~~i~~~~~ 257 (599)
+.+++.++.++++++.
T Consensus 101 ~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 101 LMTSSKNQDGLKELIE 116 (245)
T ss_pred EEEecCCchhHHHHHh
Confidence 8899998888766554
No 381
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.40 E-value=0.0032 Score=65.15 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
-|.+||-||+||||++|+|-...+
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 578999999999999999987754
No 382
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.0087 Score=62.06 Aligned_cols=76 Identities=30% Similarity=0.361 Sum_probs=45.3
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHH--HHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEec
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM--VRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLT 215 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~--~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~Vlt 215 (599)
...++.||||.|=.. |.+ ..+++| +.+.+ +||-||+|+ +++.. +.+...++.....-.-+-++||
T Consensus 182 e~fdvIIvDTSGRh~-----qe~---sLfeEM~~v~~ai-~Pd~vi~Vm-DasiG---Qaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHK-----QEA---SLFEEMKQVSKAI-KPDEIIFVM-DASIG---QAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred cCCcEEEEeCCCchh-----hhH---HHHHHHHHHHhhc-CCCeEEEEE-ecccc---HhHHHHHHHHHHhhccceEEEE
Confidence 467899999999754 222 233333 23344 477776655 45543 3344444444444345568899
Q ss_pred cCCCCCCCCcH
Q 007538 216 KLDLMDKGTNA 226 (599)
Q Consensus 216 K~Dl~~~~~~~ 226 (599)
|.|-...|.-+
T Consensus 249 KlDGhakGGgA 259 (483)
T KOG0780|consen 249 KLDGHAKGGGA 259 (483)
T ss_pred ecccCCCCCce
Confidence 99988776543
No 383
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.35 E-value=0.0052 Score=56.90 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEE
Q 007538 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIV 245 (599)
Q Consensus 166 i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~ 245 (599)
++++.+.+++++|.++++++ ++... ......+.+.+...+.+.++|+||+|+.+... ..+. .......+..++.++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D-~~~~~-~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~-~~~~~~~~~~~~~iS 77 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLD-ARDPE-LTRSRKLERYVLELGKKLLIVLNKADLVPKEV-LEKW-KSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHHhhCCEEEEEee-CCCCc-ccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHH-HHHH-HHHHHhCCCcEEEEE
Confidence 46778888889998877665 43322 12222344444445789999999999974321 1111 100111234678889
Q ss_pred cCChhhhccCCCHHHH
Q 007538 246 NRSQADINRNIDMIVA 261 (599)
Q Consensus 246 ~~s~~~i~~~~~~~~~ 261 (599)
+.++.++++++..+..
T Consensus 78 a~~~~gi~~L~~~l~~ 93 (156)
T cd01859 78 AKERLGTKILRRTIKE 93 (156)
T ss_pred ccccccHHHHHHHHHH
Confidence 9888877665554443
No 384
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.32 E-value=0.0045 Score=59.82 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc-----cHHHHHHHHHhCCCCCceEEEe
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-----TSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~-----~~~~l~la~~~d~~g~rti~Vl 214 (599)
.-|.+||..|.- +-++......-..-.++.+++|.+.+....++. .+.+++......|. .+++..+
T Consensus 53 l~LnlwDcGgqe--------~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-AkiF~l~ 123 (295)
T KOG3886|consen 53 LVLNLWDCGGQE--------EFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-AKIFCLL 123 (295)
T ss_pred heeehhccCCcH--------HHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-ceEEEEE
Confidence 457889999961 111111111111234456666665554444321 24556655555564 6889999
Q ss_pred ccCCCCCCCCc
Q 007538 215 TKLDLMDKGTN 225 (599)
Q Consensus 215 tK~Dl~~~~~~ 225 (599)
+|.|++..+.+
T Consensus 124 hKmDLv~~d~r 134 (295)
T KOG3886|consen 124 HKMDLVQEDAR 134 (295)
T ss_pred eechhcccchH
Confidence 99999987653
No 385
>PRK01889 GTPase RsgA; Reviewed
Probab=96.30 E-value=0.0069 Score=64.20 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
-.++++|.+|+|||||+|+|+|..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 379999999999999999999975
No 386
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.23 E-value=0.006 Score=65.58 Aligned_cols=27 Identities=48% Similarity=0.758 Sum_probs=24.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
+.-.|+|+|+||+|||||||.|.|.+|
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccCh
Confidence 556799999999999999999999987
No 387
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.09 E-value=0.019 Score=55.02 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHH---HHH---hCccccc
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNAL---DVL---EGRSYRL 237 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~---~~~---~~~~~~l 237 (599)
..++.++..|+++++.++++++....+..... .+.. ...+.++++|+||+|+.+...... ... .......
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~--~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGSLIP--RLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCccch--hHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 44688999999999988887765432211111 1211 124679999999999986443211 111 0001111
Q ss_pred -CCCeEEEEcCChhhhccCCCHHHH
Q 007538 238 -QHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 238 -~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
...++.+++.++.++++++..+..
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH
Confidence 124788999988887766554443
No 388
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.01 Score=66.30 Aligned_cols=129 Identities=24% Similarity=0.277 Sum_probs=75.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
....|++|..-.-|||||..+|+-.+- -+..|.+-.++ |.|+.+-+ .+.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkir---------------------fld~rede-----q~r 56 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIR---------------------FLDTREDE-----QTR 56 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhcccee---------------------eccccchh-----hhh
Confidence 456799999999999999999986542 22333332222 22221100 011
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.++=+..++| + -....-+.|||+||-.+- ...+.+..+-+|.. |+.+++..+. .+..
T Consensus 57 gitmkss~is-----~---~~~~~~~nlidspghvdf-------------~sevssas~l~d~a-lvlvdvvegv-~~qt 113 (887)
T KOG0467|consen 57 GITMKSSAIS-----L---LHKDYLINLIDSPGHVDF-------------SSEVSSASRLSDGA-LVLVDVVEGV-CSQT 113 (887)
T ss_pred ceeeeccccc-----c---ccCceEEEEecCCCccch-------------hhhhhhhhhhcCCc-EEEEeecccc-chhH
Confidence 1111112222 1 012356889999998653 23344445556655 3444566666 5556
Q ss_pred HHHHHHhCCCCCceEEEeccCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl 219 (599)
..+.|+.--.|.+.++|+||+|.
T Consensus 114 ~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 114 YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred HHHHHHHHHccCceEEEEehhhh
Confidence 66788776678999999999993
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.07 E-value=0.018 Score=64.51 Aligned_cols=29 Identities=38% Similarity=0.481 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.+++||+.|||||||++.|+|. .+...|-
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~ 391 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGL--LDPLQGE 391 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCcE
Confidence 6899999999999999999996 3444443
No 390
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.028 Score=61.65 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
++++||..||||||+++.|.|. +|...|
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 7999999999999999999995 554444
No 391
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.94 E-value=0.0057 Score=62.82 Aligned_cols=76 Identities=29% Similarity=0.380 Sum_probs=44.6
Q ss_pred EEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc-CCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCC
Q 007538 132 LSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQDI--ATSDAMKLAREVDPTGE 208 (599)
Q Consensus 132 l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~ 208 (599)
+.|+.....-+||||+.|--+ .++..+...-. -+|-..|.+ -+|..+ .+.+-+.+|-.+ ..
T Consensus 211 vkIce~saKviTFIDLAGHEk------------YLKTTvFGMTGH~PDf~MLMi-GaNaGIiGmTKEHLgLALaL---~V 274 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEK------------YLKTTVFGMTGHMPDFTMLMI-GANAGIIGMTKEHLGLALAL---HV 274 (641)
T ss_pred eeeccccceeEEEEeccchhh------------hhheeeeccccCCCCceEEEe-cccccceeccHHhhhhhhhh---cC
Confidence 345555556689999999622 11111211111 256554543 455443 245556666544 47
Q ss_pred ceEEEeccCCCCCCC
Q 007538 209 RTFGVLTKLDLMDKG 223 (599)
Q Consensus 209 rti~VltK~Dl~~~~ 223 (599)
|+++|+||+|+.+.+
T Consensus 275 PVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 275 PVFVVVTKIDMCPAN 289 (641)
T ss_pred cEEEEEEeeccCcHH
Confidence 999999999998754
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.84 E-value=0.03 Score=58.32 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|..+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999999999854
No 393
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.65 E-value=0.057 Score=56.89 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-++|+|||+..||||||..-|+..
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 6789999999999999998888765
No 394
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.60 E-value=0.01 Score=58.26 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecC-CcccccH-HHHHHHHHhCCCCCceEEEeccC
Q 007538 164 EDIESMVRSYVEKPNSVILAISPA-NQDIATS-DAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a-~~d~~~~-~~l~la~~~d~~g~rti~VltK~ 217 (599)
++--.+++..+.+|.. ||+=-|. +-|..+. ..+.+.+++......|++++|.=
T Consensus 148 qQRVAIARAL~~~P~i-ilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 148 QQRVAIARALINNPKI-ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHHHHHHhcCCCe-EEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 4445677778888884 4654332 3344443 34667777766667899999974
No 395
>PRK12289 GTPase RsgA; Reviewed
Probab=95.59 E-value=0.014 Score=61.60 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEc
Q 007538 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVN 246 (599)
Q Consensus 167 ~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~ 246 (599)
..+.+.++.+.|.+++|+...+.++.....-++...+...+.+.++|+||+|+++... .... ......++..++.+++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~-~~~~-~~~~~~~g~~v~~iSA 157 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTE-QQQW-QDRLQQWGYQPLFISV 157 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHH-HHHH-HHHHHhcCCeEEEEEc
Confidence 4556667899998877766544433222222333333445789999999999985421 1111 1111233455778888
Q ss_pred CChhhhccCCC
Q 007538 247 RSQADINRNID 257 (599)
Q Consensus 247 ~s~~~i~~~~~ 257 (599)
.++.++++++.
T Consensus 158 ~tg~GI~eL~~ 168 (352)
T PRK12289 158 ETGIGLEALLE 168 (352)
T ss_pred CCCCCHHHHhh
Confidence 88877655444
No 396
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.042 Score=57.29 Aligned_cols=135 Identities=16% Similarity=0.274 Sum_probs=78.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.+..|.|+..-.+||+|+-++|+-..- .++.. ... ..+...+||-.++ .+
T Consensus 36 kirnigiiahidagktttterily~ag-------~~~s~-----g~v------------ddgdtvtdfla~e------re 85 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAG-------AIHSA-----GDV------------DDGDTVTDFLAIE------RE 85 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhh-------hhhcc-----ccc------------CCCchHHHHHHHH------Hh
Confidence 555789999999999999999874321 01110 000 0122223333222 22
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
+ | ..+-...+. +.+.+..+.+|||||-.+.... +.+.++--|.+ ++|.+++.+. ....
T Consensus 86 r--g--itiqsaav~---fdwkg~rinlidtpghvdf~le-------------verclrvldga-vav~dasagv-e~qt 143 (753)
T KOG0464|consen 86 R--G--ITIQSAAVN---FDWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGA-VAVFDASAGV-EAQT 143 (753)
T ss_pred c--C--ceeeeeeee---cccccceEeeecCCCcceEEEE-------------HHHHHHHhcCe-EEEEeccCCc-ccce
Confidence 1 2 111112222 3455678999999998664322 33344445665 4455666655 3345
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
+...++.+....|-+..+||+|.....
T Consensus 144 ltvwrqadk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 144 LTVWRQADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred eeeehhccccCCchhhhhhhhhhhhhh
Confidence 566778888889999999999987543
No 397
>PRK13695 putative NTPase; Provisional
Probab=95.54 E-value=0.19 Score=47.40 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+|+++|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 398
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.072 Score=54.58 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
+.-.|.|+|.||+|||+|++-|.+..
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 45579999999999999999999874
No 399
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.46 E-value=0.14 Score=52.93 Aligned_cols=38 Identities=34% Similarity=0.467 Sum_probs=28.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEE
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQL 80 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l 80 (599)
..|+++|||+.++|||||...|+.-.+ --.|.|+-+.+
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~L 139 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVEL 139 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEc
Confidence 699999999999999999999875321 11456655554
No 400
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.45 E-value=0.012 Score=55.13 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=24.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCccc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (599)
-+++|+|..+||||||+|-|.|... |.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~-P~~ 53 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET-PAS 53 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC-CCC
Confidence 3799999999999999999999753 654
No 401
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.38 E-value=0.016 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+..+|.|+.+|||||++.|+.=.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999643
No 402
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.38 E-value=0.052 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
+|+++|+.++||||++..+....+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 689999999999999999965543
No 403
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.30 E-value=0.022 Score=59.00 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=40.8
Q ss_pred CcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh-cCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV-EKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 141 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
-+.||||-|-- ..++..++..+ ++.|-.+|+ +.|+... .+.+-+.++-. .+-|+|+|+||+
T Consensus 202 lVsfVDtvGHE------------pwLrTtirGL~gqk~dYglLv-VaAddG~~~~tkEHLgi~~a---~~lPviVvvTK~ 265 (527)
T COG5258 202 LVSFVDTVGHE------------PWLRTTIRGLLGQKVDYGLLV-VAADDGVTKMTKEHLGIALA---MELPVIVVVTKI 265 (527)
T ss_pred EEEEEecCCcc------------HHHHHHHHHHhccccceEEEE-EEccCCcchhhhHhhhhhhh---hcCCEEEEEEec
Confidence 36799999961 22333444444 357776554 4566543 23343433332 257999999999
Q ss_pred CCCCCC
Q 007538 218 DLMDKG 223 (599)
Q Consensus 218 Dl~~~~ 223 (599)
|+.+..
T Consensus 266 D~~~dd 271 (527)
T COG5258 266 DMVPDD 271 (527)
T ss_pred ccCcHH
Confidence 999754
No 404
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.062 Score=55.00 Aligned_cols=133 Identities=19% Similarity=0.332 Sum_probs=83.1
Q ss_pred CCCe--EEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 37 ALPS--VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 37 ~lP~--IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
+.|. |.-||.-.-|||||--||+..-- . ....++..++++.+..++.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila--~-----------------------------~g~A~~~kydeID~APEEk 99 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILA--E-----------------------------KGGAKFKKYDEIDKAPEEK 99 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHH--h-----------------------------ccccccccHhhhhcChhhh
Confidence 4453 56699999999999999986421 0 1122444555554443332
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT 193 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~ 193 (599)
..+++-+.-.++.... ..++.=+|.||-. +.+++|+....+- |..||||......+ .+
T Consensus 100 -------aRGITIn~aHveYeTa-~RhYaH~DCPGHA------------DYIKNMItGaaqM-DGaILVVaatDG~MPQT 158 (449)
T KOG0460|consen 100 -------ARGITINAAHVEYETA-KRHYAHTDCPGHA------------DYIKNMITGAAQM-DGAILVVAATDGPMPQT 158 (449)
T ss_pred -------hccceEeeeeeeeecc-ccccccCCCCchH------------HHHHHhhcCcccc-CceEEEEEcCCCCCcch
Confidence 2234434444444443 4678889999962 5567776655444 55567665444333 24
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
.+-+-+|+++-- .++++.+||.|+++..
T Consensus 159 rEHlLLArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 159 REHLLLARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHHHHHHHcCC--ceEEEEEecccccCCH
Confidence 566778998864 6788889999999654
No 405
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.24 E-value=0.017 Score=52.48 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 007538 41 VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (599)
|+|+|.++||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 406
>PRK00098 GTPase RsgA; Reviewed
Probab=95.16 E-value=0.0093 Score=61.68 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=46.2
Q ss_pred hcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhc
Q 007538 174 VEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (599)
Q Consensus 174 i~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~ 253 (599)
+.+.|.++++++..+.+......-++...+...+.+.++|+||+|+.+.......... ....++..++.+++.++.+++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~-~~~~~g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLA-LYRAIGYDVLELSAKEGEGLD 156 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHH-HHHHCCCeEEEEeCCCCccHH
Confidence 4788988777654444332221122322233457899999999999743221111111 112234567888998887765
Q ss_pred cCC
Q 007538 254 RNI 256 (599)
Q Consensus 254 ~~~ 256 (599)
+++
T Consensus 157 ~L~ 159 (298)
T PRK00098 157 ELK 159 (298)
T ss_pred HHH
Confidence 443
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.09 E-value=0.017 Score=55.29 Aligned_cols=30 Identities=27% Similarity=0.646 Sum_probs=24.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.++|+|.++|||||++++|+|. +|.+.+.+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~--i~~~~~~i 56 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF--IPPDERII 56 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh--cCCCCCEE
Confidence 5899999999999999999985 45444443
No 408
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.00 E-value=0.014 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=17.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 409
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=94.98 E-value=0.022 Score=66.07 Aligned_cols=20 Identities=50% Similarity=0.840 Sum_probs=18.9
Q ss_pred ECCCCCCHHHHHHHhhCCCC
Q 007538 44 VGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 44 vG~~ssGKSSllnaL~G~~~ 63 (599)
+|.||+|||||||.|.|..|
T Consensus 1 ~g~qssgkstlln~lf~t~f 20 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF 20 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc
Confidence 59999999999999999987
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.94 E-value=0.019 Score=51.59 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++|+|..+||||||+++|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999999973
No 411
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.94 E-value=0.019 Score=56.76 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
-|++||+.|+|||||||.|.|..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
No 412
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.021 Score=53.08 Aligned_cols=31 Identities=39% Similarity=0.710 Sum_probs=25.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.+.|||..+||||||+++|+++ ++-++|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 5789999999999999999997 455555544
No 413
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.92 E-value=0.086 Score=59.08 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999996
No 414
>PRK01889 GTPase RsgA; Reviewed
Probab=94.91 E-value=0.013 Score=62.16 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=44.8
Q ss_pred hcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhc
Q 007538 174 VEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (599)
Q Consensus 174 i~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~ 253 (599)
+.+.|.+++ |++++.++.....-+++-.+...+.+.++|+||+|+++......+.+... ..+...+.+++.++.+++
T Consensus 110 aANvD~vli-V~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFI-VCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEE-EEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCccHH
Confidence 467787655 44556666443333444444445677899999999986522222222221 334456777887766654
Q ss_pred c
Q 007538 254 R 254 (599)
Q Consensus 254 ~ 254 (599)
.
T Consensus 187 ~ 187 (356)
T PRK01889 187 V 187 (356)
T ss_pred H
Confidence 3
No 415
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=94.88 E-value=0.19 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|..+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999999999854
No 416
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=94.88 E-value=0.0025 Score=59.37 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=86.6
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..|.++.|+|+-++||+|++...+...| .- ..+..|...
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nf-----s~-----------------------------------~yRAtIgvd- 61 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNF-----SY-----------------------------------HYRATIGVD- 61 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHH-----HH-----------------------------------HHHHHHhHH-
Confidence 4788999999999999999999987765 00 111111110
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
|.-+++ .........+.|||..|. +++..|++-|.+.+....+|+.-.+ ...-+.
T Consensus 62 ---------falkVl--~wdd~t~vRlqLwdIagQ-------------erfg~mtrVyykea~~~~iVfdvt~-s~tfe~ 116 (229)
T KOG4423|consen 62 ---------FALKVL--QWDDKTIVRLQLWDIAGQ-------------ERFGNMTRVYYKEAHGAFIVFDVTR-SLTFEP 116 (229)
T ss_pred ---------HHHHHh--ccChHHHHHHHHhcchhh-------------hhhcceEEEEecCCcceEEEEEccc-cccccH
Confidence 100010 112222456889999998 5667788889999887655543322 221222
Q ss_pred HHHHHHHhC-----CCC--CceEEEeccCCCCCCCCc-H-HHHHhCcccccCCCeEEEEcCChhhhc
Q 007538 196 AMKLAREVD-----PTG--ERTFGVLTKLDLMDKGTN-A-LDVLEGRSYRLQHPWVGIVNRSQADIN 253 (599)
Q Consensus 196 ~l~la~~~d-----~~g--~rti~VltK~Dl~~~~~~-~-~~~~~~~~~~l~~g~~~v~~~s~~~i~ 253 (599)
..+..+.+| |.| .+++..-||||.-..... . ..+-+.....---||+.++....++++
T Consensus 117 ~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 117 VSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred HHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 223334444 344 466888899998643321 1 222221222333578888777655554
No 417
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.86 E-value=0.033 Score=57.06 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|..|+||||++..|.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 418
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.75 E-value=0.022 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 419
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.73 E-value=0.12 Score=60.17 Aligned_cols=22 Identities=50% Similarity=0.745 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+|+|||+.|||||||++.|+|.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999996
No 420
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.73 E-value=0.059 Score=49.90 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 171 RSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 171 ~~yi~~~~~iIL~v~~a~~d~~--~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
.+.++.+|.++++++ +..... .....+..+.. ..+.|.|+|+||+|+.++.
T Consensus 3 ~~~l~~aD~il~VvD-~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 3 YKVIDSSDVVIQVLD-ARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hHhhhhCCEEEEEEE-CCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH
Confidence 345778997766555 444322 22333344332 3358999999999998643
No 421
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.72 E-value=0.12 Score=58.62 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+++||+.|||||||++.|.|.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999996
No 422
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.66 E-value=0.026 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.|+|..+|||||++|+|+|.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~ 55 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGD 55 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCc
Confidence 5899999999999999999997
No 423
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.65 E-value=0.031 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.++|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 424
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.64 E-value=0.13 Score=58.49 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPR 66 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (599)
.++|||+.|||||||++.|+|.- |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 68999999999999999999963 64
No 425
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.60 E-value=0.056 Score=56.17 Aligned_cols=30 Identities=33% Similarity=0.740 Sum_probs=25.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.|+|+|.+||||||++++|+|. +|.+.+++
T Consensus 146 ~ili~G~tGsGKTTll~al~~~--~~~~~~iv 175 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDE--IPKDERII 175 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHcc--CCccccEE
Confidence 7999999999999999999985 56555443
No 426
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.57 E-value=0.032 Score=54.39 Aligned_cols=29 Identities=41% Similarity=0.487 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++++|+.|||||||++.|+|. +|...|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~ 57 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL--LGPTSGE 57 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCce
Confidence 5899999999999999999996 3444443
No 427
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=0.14 Score=55.73 Aligned_cols=57 Identities=14% Similarity=0.325 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC--CCCceEEEeccCCCCCC
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP--TGERTFGVLTKLDLMDK 222 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~--~g~rti~VltK~Dl~~~ 222 (599)
++--.+.+..++++.. ++.+.++..+.......+.+.+.. .++-+|.|+--.|+...
T Consensus 493 kQrvslaRa~lKda~I--l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPI--LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred HHHHHHHHHHhcCCCe--EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc
Confidence 5566788889999984 445666655543333334443332 34445677777777653
No 428
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.55 E-value=0.032 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|..++|||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5689999999999999999996
No 429
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.51 E-value=0.028 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~ 59 (599)
+.|.|+|+|.+||||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56889999999999999999998
No 430
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.033 Score=55.35 Aligned_cols=29 Identities=41% Similarity=0.613 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++|+|..|||||||++.|+|. +|..+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~--~~p~~G~ 56 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL--LRPDSGE 56 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCceE
Confidence 6899999999999999999996 3434443
No 431
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.46 E-value=0.032 Score=54.10 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=26.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC-CCccccccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 75 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~-~lP~~~~~~Tr~p 75 (599)
.|+|+|.+|||||||++.|.+.. -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 58999999999999999999862 1122333556666
No 432
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.46 E-value=0.19 Score=51.74 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=50.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHH---HHHHHHHhhcC-CCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVED---IESMVRSYVEK-PNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~---i~~~~~~yi~~-~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~Vl 214 (599)
..++.|+||.|=-.+... +.+. +.+.+...+.. |+-+ |++.+|.. -+.++.-|+.....-.=+=+|+
T Consensus 221 ~~DvvliDTAGRLhnk~n-----LM~EL~KI~rV~~k~~~~ap~e~-llvlDAtt---Gqnal~QAk~F~eav~l~GiIl 291 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKN-----LMDELKKIVRVIKKDDPDAPHEI-LLVLDATT---GQNALSQAKIFNEAVGLDGIIL 291 (340)
T ss_pred CCCEEEEeCcccccCchh-----HHHHHHHHHHHhccccCCCCceE-EEEEEccc---ChhHHHHHHHHHHhcCCceEEE
Confidence 578999999996553221 3333 34445555543 4445 44545554 3556666666665545667899
Q ss_pred ccCCCCCCCCcHHHH
Q 007538 215 TKLDLMDKGTNALDV 229 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~ 229 (599)
||+|-...|..+..+
T Consensus 292 TKlDgtAKGG~il~I 306 (340)
T COG0552 292 TKLDGTAKGGIILSI 306 (340)
T ss_pred EecccCCCcceeeeH
Confidence 999977777654444
No 433
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.033 Score=54.32 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=24.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++++|..|||||||++.|.|. +|..+|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~ 55 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL--TPPSSGT 55 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC--CCCCccE
Confidence 7999999999999999999996 3444443
No 434
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.44 E-value=0.034 Score=54.46 Aligned_cols=29 Identities=41% Similarity=0.436 Sum_probs=24.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++|+|+.|||||||++.|+|. +|...|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G~ 60 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL--DRPTSGE 60 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--cCCCcee
Confidence 6899999999999999999996 3444443
No 435
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.42 E-value=0.051 Score=57.12 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=26.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
..|+|+|.+||||||++++|++. +|.+..++|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 36999999999999999999985 466555544
No 436
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=94.40 E-value=0.068 Score=49.42 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=39.5
Q ss_pred CeEEEEEecCCcccccHHHHHHH-HHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCC
Q 007538 178 NSVILAISPANQDIATSDAMKLA-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 178 ~~iIL~v~~a~~d~~~~~~l~la-~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~ 256 (599)
|.+++ |+++....... ...+. ..+...+.+.|+|+||+|+.+.. .....+...........+.+++.++.+++.+.
T Consensus 1 Dvvl~-VvD~~~p~~~~-~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~-~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILE-VLDARDPLGTR-SPDIERVLIKEKGKKLILVLNKADLVPKE-VLRKWLAYLRHSYPTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEE-EEeccCCcccc-CHHHHHHHHhcCCCCEEEEEechhcCCHH-HHHHHHHHHHhhCCceEEEEeccCCcChhhHH
Confidence 44544 44554433222 22233 34455678999999999997543 11121111111112345677777776665544
Q ss_pred C
Q 007538 257 D 257 (599)
Q Consensus 257 ~ 257 (599)
.
T Consensus 78 ~ 78 (155)
T cd01849 78 S 78 (155)
T ss_pred H
Confidence 3
No 437
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.39 E-value=0.13 Score=59.81 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+|+|||+.|||||||++.|+|.
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999996
No 438
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.37 E-value=0.16 Score=58.97 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+|+|||+.|||||||++.|+|.
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999996
No 439
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=0.22 Score=59.76 Aligned_cols=83 Identities=23% Similarity=0.221 Sum_probs=46.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHH---HHHHHhhc--CCCeEEEEEecCC---cccccH----HHH----HHHHHh
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIE---SMVRSYVE--KPNSVILAISPAN---QDIATS----DAM----KLAREV 203 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~---~~~~~yi~--~~~~iIL~v~~a~---~d~~~~----~~l----~la~~~ 203 (599)
..-++|||.|-..... ++++.....+. .+.++|=+ .-|.|||+++.+. .+.+.. ..+ +-.++.
T Consensus 174 deaVlIDtaGry~~q~-s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t 252 (1188)
T COG3523 174 DEAVLIDTAGRYITQD-SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET 252 (1188)
T ss_pred cceEEEcCCcceeccc-CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999665433 23333333333 45666643 3588888875432 111111 011 112222
Q ss_pred CCCCCceEEEeccCCCCCCC
Q 007538 204 DPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 204 d~~g~rti~VltK~Dl~~~~ 223 (599)
-...-|+++++||.|++...
T Consensus 253 L~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 253 LHARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred hccCCceEEEEecccccccH
Confidence 23468999999999999744
No 440
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.36 E-value=0.15 Score=59.44 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+|++||+.||||||+++.|.|.
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999996
No 441
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.34 E-value=0.037 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 442
>PLN03232 ABC transporter C family member; Provisional
Probab=94.33 E-value=0.23 Score=62.61 Aligned_cols=22 Identities=41% Similarity=0.815 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|||+.|||||||+++|+|.
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~ 666 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGE 666 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999996
No 443
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.31 E-value=0.038 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
-.++++|+.+||||||++.|+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 378999999999999999999963
No 444
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.29 E-value=0.039 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 445
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.28 E-value=0.16 Score=58.98 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|++||..|||||||++.|.|.
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999996
No 446
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.034 Score=52.54 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=27.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (599)
-+++.|+.|+|||||+.+|....-+--+-..+||-|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 489999999999999999997753333444566666
No 447
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.25 E-value=0.041 Score=53.43 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++|+|+.|||||||++.|+|. +|..+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~ 56 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL--IKESSGS 56 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCceE
Confidence 6899999999999999999996 3444443
No 448
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.22 E-value=0.046 Score=52.37 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-|+|+|++|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999875
No 449
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.041 Score=53.70 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++|+|..|||||||++.|+|. +|...|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~--~~p~~G~ 56 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL--ERPDSGE 56 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCeE
Confidence 5889999999999999999996 3444443
No 450
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.22 E-value=0.25 Score=55.83 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-++++||+.||||||+++.|.|-
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999985
No 451
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.20 E-value=0.042 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.++++|+.|||||||++.|.|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999996
No 452
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.20 E-value=0.23 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.|..+|-|-=||||||+||.|+-..
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 3778899999999999999999764
No 453
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.18 E-value=0.044 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|..|||||||++.|+|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 454
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.16 E-value=0.041 Score=53.98 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|..|||||||++.|+|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 455
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.16 E-value=0.043 Score=53.89 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 456
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.15 E-value=0.044 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 457
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.15 E-value=0.043 Score=53.54 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=23.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
.++++|..|||||||++.|+|. +|...|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G 56 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE--ELPTSG 56 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCce
Confidence 5889999999999999999996 344444
No 458
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.14 E-value=0.044 Score=54.24 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++|+|..|||||||++.|+|.. |..+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~ 56 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV--KPDSGK 56 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcE
Confidence 68899999999999999999963 434443
No 459
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.044 Score=53.35 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 460
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.14 E-value=0.043 Score=53.51 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=23.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++++|..+|||||++++|+|. .|..+|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl--~~~~~G~ 59 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL--VRPRSGR 59 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCee
Confidence 5889999999999999999996 3444443
No 461
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.14 E-value=0.046 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 462
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.046 Score=54.20 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++++|..|||||||++.|+|. +|...|-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G~ 61 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL--ERPTSGS 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCce
Confidence 6899999999999999999996 3444443
No 463
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.09 E-value=0.037 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 464
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.044 Score=54.35 Aligned_cols=30 Identities=40% Similarity=0.467 Sum_probs=24.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.++|+|+.|||||||++.|+|. +|-.+|.+
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G~i 66 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL--DTPTSGDV 66 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCceEE
Confidence 6889999999999999999996 34344433
No 465
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.09 E-value=0.16 Score=57.70 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.|+|+|..|||||||++.|+|.-
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999973
No 466
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.048 Score=51.71 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999996
No 467
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.05 E-value=0.047 Score=53.49 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++++|..|||||||++.|+|. +|..+|-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~ 61 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL--LEPDAGF 61 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCCce
Confidence 5889999999999999999996 3434443
No 468
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.04 E-value=0.045 Score=56.78 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=24.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.++++|..|||||||++.|+|. +|...|.+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~i 64 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGTI 64 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcEE
Confidence 6999999999999999999996 44444543
No 469
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.02 E-value=0.046 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||+++|+|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 470
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.02 E-value=0.049 Score=53.11 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
.++++|..|||||||++.|+|. +|...|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G 55 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL--EEPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCc
Confidence 6899999999999999999996 344444
No 471
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.00 E-value=0.05 Score=52.64 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
--.++++|..|||||||++.|.|..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999963
No 472
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.99 E-value=0.12 Score=52.87 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccccCCCeEEE
Q 007538 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGI 244 (599)
Q Consensus 167 ~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l~~g~~~v 244 (599)
...+...++.+|.|+++++ +..... ++...+.+.+ .+.+.|+|+||+|+.++.. .+.+.+.. .+...+.+
T Consensus 12 ~~~~~~~l~~aDvVl~V~D-ar~p~~-~~~~~i~~~l--~~kp~IiVlNK~DL~~~~~~~~~~~~~~~----~~~~vi~i 83 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLD-ARIPLS-SRNPMIDEIR--GNKPRLIVLNKADLADPAVTKQWLKYFEE----KGIKALAI 83 (276)
T ss_pred HHHHHHHHhhCCEEEEEEe-CCCCCC-CCChhHHHHH--CCCCEEEEEEccccCCHHHHHHHHHHHHH----cCCeEEEE
Confidence 3456778899998766654 544332 2222233333 2579999999999975421 12222211 12345667
Q ss_pred EcCChhhhccCCC
Q 007538 245 VNRSQADINRNID 257 (599)
Q Consensus 245 ~~~s~~~i~~~~~ 257 (599)
++.++.++..+..
T Consensus 84 Sa~~~~gi~~L~~ 96 (276)
T TIGR03596 84 NAKKGKGVKKIIK 96 (276)
T ss_pred ECCCcccHHHHHH
Confidence 7776665544433
No 473
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.97 E-value=0.049 Score=52.94 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.++|+|..++|||||+++|+|. .|..+|.++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G~i~ 66 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRF--LEAEEGKIE 66 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcc--cCCCCCeEE
Confidence 6899999999999999999996 344455443
No 474
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.97 E-value=0.052 Score=52.60 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=24.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
-.++|+|..|+|||||++.|.|. +|...|-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~ 56 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL--SPPLAGR 56 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCCCCcE
Confidence 36899999999999999999996 3444443
No 475
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.05 Score=53.42 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|..|||||||++.|+|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 476
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.92 E-value=0.051 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|..|||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 477
>PLN03232 ABC transporter C family member; Provisional
Probab=93.92 E-value=0.19 Score=63.18 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+|+|||+.|||||||++.|.|.
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl 1285 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRI 1285 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999996
No 478
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.92 E-value=0.055 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
-.++++|..++|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999973
No 479
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.92 E-value=0.051 Score=54.82 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=25.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.++|+|..|||||||++.|+|. ++-..|-+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGK--LKPNLGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCCceE
Confidence 6999999999999999999997 44445544
No 480
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.90 E-value=0.051 Score=53.95 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
.++++|..|||||||++.|+|. +|..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G 55 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF--LRPTSG 55 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC--CCCCCc
Confidence 6899999999999999999996 344444
No 481
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=93.89 E-value=0.17 Score=57.39 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=24.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.|+|+|+.|+|||||++.|+|. +|...|.+
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl--~~p~~G~I 397 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRF--YDPQSGRI 397 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhc--cCCCCCEE
Confidence 6899999999999999999996 34444433
No 482
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.053 Score=53.53 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=23.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (599)
.++|+|+.|||||||++.|+|. +|-..|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G~ 59 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRF--YDPQKGQ 59 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--cCCCCCE
Confidence 5889999999999999999996 3444443
No 483
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.87 E-value=0.053 Score=42.85 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 007538 41 VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (599)
|++.|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 484
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.85 E-value=0.054 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|..|||||||++.|.|.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 485
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.83 E-value=0.21 Score=56.67 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
.++++|+.|||||||++.|+|. +|...|
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~--~~~~~G 390 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRV--YDPTVG 390 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccC--CCCCCC
Confidence 6899999999999999999996 344444
No 486
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.83 E-value=0.053 Score=53.10 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.++++|+.|||||||++.|+|.. |-.+|-+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 58899999999999999999973 4445544
No 487
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.78 E-value=0.056 Score=52.93 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=24.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.++|+|..|+|||||++.|+|. +|...|-+
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~--~~~~~G~i 68 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL--LHVESGQI 68 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--CCCCCeeE
Confidence 6889999999999999999996 34444533
No 488
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.78 E-value=0.053 Score=52.71 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=23.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
.++|+|..|||||||++.|+|. +|..+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 55 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL--IKPDSG 55 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cCCCce
Confidence 5889999999999999999996 344444
No 489
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.061 Score=49.78 Aligned_cols=32 Identities=41% Similarity=0.570 Sum_probs=25.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
..++++|+.++|||||+++|.|. +|...|.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~~~~~G~i~ 57 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--LKPTSGEIL 57 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCCCccEEE
Confidence 47899999999999999999996 344455443
No 490
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.77 E-value=0.055 Score=54.26 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
-++++|+.||||||||.+|.|. ++-..|
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~--l~p~~G 57 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL--LKPKSG 57 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc--CCCCCC
Confidence 4889999999999999999995 444434
No 491
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.06 Score=50.77 Aligned_cols=22 Identities=18% Similarity=0.524 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|..+||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 492
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.75 E-value=0.058 Score=52.67 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|+.|||||||++.|.|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 493
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.73 E-value=0.058 Score=53.77 Aligned_cols=28 Identities=36% Similarity=0.673 Sum_probs=23.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
.++++|+.|||||||++.|.|. +|...|
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~--~~~~~G 58 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI--VPRDAG 58 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCc
Confidence 6899999999999999999996 344444
No 494
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.73 E-value=0.059 Score=53.11 Aligned_cols=28 Identities=36% Similarity=0.628 Sum_probs=23.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
.++|+|+.|||||||++.|+|. +|...|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~--~~~~~G 60 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL--LKPTSG 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCc
Confidence 6999999999999999999996 344444
No 495
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.72 E-value=0.059 Score=53.81 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=24.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.++|+|..|||||||++.|+|. +|-..|.++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i~ 61 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL--IDPTEGSIL 61 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEEE
Confidence 6889999999999999999996 344445443
No 496
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.72 E-value=0.076 Score=55.70 Aligned_cols=30 Identities=20% Similarity=0.529 Sum_probs=24.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.|+|+|.+||||||++++|++. +|.+.-++
T Consensus 162 nili~G~tgSGKTTll~aL~~~--ip~~~ri~ 191 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALRE--IPAIERLI 191 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhh--CCCCCeEE
Confidence 5999999999999999999874 56654333
No 497
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.71 E-value=0.064 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|..+||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 498
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.71 E-value=0.06 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 499
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.70 E-value=0.053 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999996
No 500
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.68 E-value=0.061 Score=52.79 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|+.|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
Done!