Query 007538
Match_columns 599
No_of_seqs 407 out of 3086
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 04:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 2.6E-91 9E-96 786.5 52.9 575 3-592 25-743 (772)
2 3szr_A Interferon-induced GTP- 100.0 1.1E-80 3.7E-85 697.9 49.2 529 36-592 43-584 (608)
3 3t34_A Dynamin-related protein 100.0 6.2E-52 2.1E-56 438.2 30.4 331 4-335 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 7.5E-47 2.6E-51 398.2 36.8 339 3-353 5-345 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 1E-39 3.5E-44 338.1 30.4 310 5-324 1-315 (315)
6 3ljb_A Interferon-induced GTP- 100.0 6.3E-40 2.2E-44 325.8 20.9 257 332-590 3-271 (271)
7 2aka_B Dynamin-1; fusion prote 100.0 5.5E-37 1.9E-41 314.9 33.5 298 4-313 1-298 (299)
8 2j69_A Bacterial dynamin-like 99.8 3.1E-19 1E-23 202.8 22.5 174 36-223 67-246 (695)
9 3iev_A GTP-binding protein ERA 99.7 1.9E-16 6.5E-21 162.9 11.0 168 37-263 9-180 (308)
10 1wf3_A GTP-binding protein; GT 99.7 1.7E-16 5.8E-21 162.7 10.1 160 38-261 7-169 (301)
11 3iby_A Ferrous iron transport 99.6 1.8E-15 6E-20 151.5 7.3 158 38-260 1-162 (256)
12 2g6b_A RAS-related protein RAB 99.6 5.2E-15 1.8E-19 138.6 8.4 160 37-261 9-170 (180)
13 3tkl_A RAS-related protein RAB 99.6 6.8E-15 2.3E-19 139.9 9.3 163 37-265 15-179 (196)
14 4dhe_A Probable GTP-binding pr 99.6 8.1E-15 2.8E-19 142.7 9.8 167 37-262 28-208 (223)
15 1kao_A RAP2A; GTP-binding prot 99.5 1.2E-14 4E-19 133.8 9.0 157 39-262 4-163 (167)
16 1z08_A RAS-related protein RAB 99.5 5.4E-15 1.9E-19 137.0 6.7 159 37-261 5-165 (170)
17 3q72_A GTP-binding protein RAD 99.5 7.9E-15 2.7E-19 135.4 7.8 158 38-263 2-162 (166)
18 2bme_A RAB4A, RAS-related prot 99.5 8.6E-15 3E-19 138.0 8.1 161 37-263 9-171 (186)
19 2qu8_A Putative nucleolar GTP- 99.5 2.4E-14 8.3E-19 140.3 11.3 171 30-259 21-199 (228)
20 1ega_A Protein (GTP-binding pr 99.5 2E-15 7E-20 154.7 3.7 161 37-260 7-170 (301)
21 1xzp_A Probable tRNA modificat 99.5 1.4E-14 4.7E-19 157.4 10.3 158 38-262 243-402 (482)
22 1zbd_A Rabphilin-3A; G protein 99.5 1.7E-14 5.7E-19 138.3 9.6 160 37-262 7-168 (203)
23 3cph_A RAS-related protein SEC 99.5 9.4E-15 3.2E-19 141.0 7.5 162 37-265 19-182 (213)
24 1g16_A RAS-related protein SEC 99.5 6.3E-15 2.2E-19 136.4 5.8 158 38-263 3-163 (170)
25 2il1_A RAB12; G-protein, GDP, 99.5 1.1E-14 3.8E-19 138.7 7.5 159 37-261 25-186 (192)
26 3gee_A MNME, tRNA modification 99.5 5.5E-15 1.9E-19 160.4 6.0 160 37-261 232-394 (476)
27 2xtp_A GTPase IMAP family memb 99.5 1.1E-14 3.7E-19 145.9 7.5 169 37-266 21-209 (260)
28 2oil_A CATX-8, RAS-related pro 99.5 9.6E-15 3.3E-19 138.9 6.7 161 36-262 23-185 (193)
29 1svi_A GTP-binding protein YSX 99.5 3E-14 1E-18 135.4 10.1 162 37-259 22-189 (195)
30 1z0f_A RAB14, member RAS oncog 99.5 1.3E-14 4.4E-19 135.5 7.5 157 37-259 14-172 (179)
31 3bc1_A RAS-related protein RAB 99.5 3.3E-14 1.1E-18 134.5 10.4 111 140-263 70-183 (195)
32 2ew1_A RAS-related protein RAB 99.5 1.5E-14 5.1E-19 139.3 7.9 162 36-263 24-187 (201)
33 3tw8_B RAS-related protein RAB 99.5 3.9E-15 1.3E-19 139.3 3.7 160 36-262 7-168 (181)
34 1u8z_A RAS-related protein RAL 99.5 1.7E-14 5.7E-19 132.9 7.9 156 38-260 4-162 (168)
35 3dz8_A RAS-related protein RAB 99.5 1E-14 3.4E-19 138.7 6.5 162 35-262 20-183 (191)
36 3a1s_A Iron(II) transport prot 99.5 1.4E-14 4.7E-19 145.2 7.7 154 38-261 5-163 (258)
37 2fg5_A RAB-22B, RAS-related pr 99.5 6.4E-15 2.2E-19 140.2 4.9 160 35-260 20-181 (192)
38 1z0j_A RAB-22, RAS-related pro 99.5 1.5E-14 5.1E-19 133.8 7.3 155 38-258 6-162 (170)
39 2f7s_A C25KG, RAS-related prot 99.5 4E-14 1.4E-18 137.3 10.3 110 140-263 84-197 (217)
40 3lxx_A GTPase IMAP family memb 99.5 3E-14 1E-18 140.8 9.4 130 37-223 28-161 (239)
41 2nzj_A GTP-binding protein REM 99.5 2.7E-14 9.2E-19 132.9 8.5 161 37-262 3-166 (175)
42 2dyk_A GTP-binding protein; GT 99.5 2.5E-14 8.5E-19 131.2 7.8 151 38-258 1-155 (161)
43 2a9k_A RAS-related protein RAL 99.5 2.8E-14 9.7E-19 134.1 8.4 162 37-265 17-181 (187)
44 2bov_A RAla, RAS-related prote 99.5 3E-14 1E-18 136.5 8.6 162 37-265 13-177 (206)
45 3geh_A MNME, tRNA modification 99.5 1.4E-14 4.6E-19 156.7 6.8 157 37-261 223-380 (462)
46 2o52_A RAS-related protein RAB 99.5 1.7E-14 5.6E-19 138.5 6.6 162 37-265 24-188 (200)
47 2lkc_A Translation initiation 99.5 1.7E-14 5.8E-19 134.8 6.5 158 36-263 6-169 (178)
48 2bcg_Y Protein YP2, GTP-bindin 99.5 1.8E-14 6.2E-19 138.5 6.8 160 37-262 7-168 (206)
49 1z06_A RAS-related protein RAB 99.5 5.1E-14 1.7E-18 133.5 9.7 152 37-254 19-177 (189)
50 2hup_A RAS-related protein RAB 99.5 3.4E-14 1.2E-18 136.5 8.5 161 37-263 28-191 (201)
51 2a5j_A RAS-related protein RAB 99.5 2.1E-14 7.1E-19 136.5 6.8 161 37-263 20-182 (191)
52 3pqc_A Probable GTP-binding pr 99.5 6.1E-14 2.1E-18 132.9 10.1 162 37-261 22-190 (195)
53 1ek0_A Protein (GTP-binding pr 99.5 2.3E-14 7.8E-19 132.4 6.9 153 39-257 4-161 (170)
54 3t5d_A Septin-7; GTP-binding p 99.5 7.3E-14 2.5E-18 141.1 11.1 172 39-258 9-197 (274)
55 2y8e_A RAB-protein 6, GH09086P 99.5 1.5E-14 5E-19 135.1 5.6 155 39-259 15-171 (179)
56 3b1v_A Ferrous iron uptake tra 99.5 2.1E-14 7.2E-19 144.8 7.1 152 38-260 3-159 (272)
57 2fu5_C RAS-related protein RAB 99.5 1.1E-14 3.7E-19 137.0 4.6 160 37-262 7-168 (183)
58 1c1y_A RAS-related protein RAP 99.5 1.7E-14 5.9E-19 133.0 5.9 154 39-259 4-161 (167)
59 2gf9_A RAS-related protein RAB 99.5 1.9E-14 6.5E-19 136.4 6.2 160 37-262 21-182 (189)
60 2fn4_A P23, RAS-related protei 99.5 1.9E-14 6.3E-19 134.7 5.9 161 37-264 8-171 (181)
61 1wms_A RAB-9, RAB9, RAS-relate 99.5 6.8E-14 2.3E-18 130.5 9.7 159 37-261 6-170 (177)
62 3i8s_A Ferrous iron transport 99.5 1.2E-14 4.3E-19 146.8 5.0 155 38-259 3-163 (274)
63 2efe_B Small GTP-binding prote 99.5 4.4E-14 1.5E-18 132.3 8.3 157 37-259 11-169 (181)
64 3clv_A RAB5 protein, putative; 99.5 4E-14 1.4E-18 134.9 8.1 106 140-262 93-201 (208)
65 4dsu_A GTPase KRAS, isoform 2B 99.5 6.2E-14 2.1E-18 132.2 9.3 157 39-263 5-164 (189)
66 4djt_A GTP-binding nuclear pro 99.5 1.3E-14 4.4E-19 140.8 4.5 113 140-265 61-175 (218)
67 3q85_A GTP-binding protein REM 99.5 3.6E-14 1.2E-18 131.4 7.3 160 38-262 2-164 (169)
68 1upt_A ARL1, ADP-ribosylation 99.5 3.6E-14 1.2E-18 131.5 7.3 153 37-261 6-165 (171)
69 3kkq_A RAS-related protein M-R 99.5 4.9E-14 1.7E-18 132.5 8.1 159 37-262 17-179 (183)
70 1ky3_A GTP-binding protein YPT 99.5 5.4E-14 1.8E-18 131.6 8.3 161 37-262 7-175 (182)
71 3lxw_A GTPase IMAP family memb 99.5 1.4E-13 4.7E-18 137.0 11.5 129 37-221 20-153 (247)
72 1z2a_A RAS-related protein RAB 99.5 1.7E-14 5.8E-19 133.2 4.6 155 38-259 5-161 (168)
73 3oes_A GTPase rhebl1; small GT 99.5 1.6E-14 5.6E-19 138.5 4.6 160 37-264 23-186 (201)
74 1mky_A Probable GTP-binding pr 99.5 3.3E-14 1.1E-18 153.4 7.2 163 38-265 1-166 (439)
75 1r2q_A RAS-related protein RAB 99.5 4.6E-14 1.6E-18 130.4 7.1 155 38-258 6-162 (170)
76 1vg8_A RAS-related protein RAB 99.5 3.7E-14 1.3E-18 136.1 6.7 159 37-261 7-171 (207)
77 1r8s_A ADP-ribosylation factor 99.5 9.2E-14 3.1E-18 127.9 9.1 148 40-260 2-157 (164)
78 2wji_A Ferrous iron transport 99.5 2.6E-14 8.9E-19 132.7 4.9 151 39-259 4-159 (165)
79 2gj8_A MNME, tRNA modification 99.5 6.4E-14 2.2E-18 131.2 7.5 108 140-259 52-160 (172)
80 4bas_A ADP-ribosylation factor 99.5 7.9E-14 2.7E-18 132.8 8.1 159 36-264 15-188 (199)
81 2p5s_A RAS and EF-hand domain 99.5 3.9E-14 1.3E-18 135.6 5.9 157 37-259 27-191 (199)
82 2cxx_A Probable GTP-binding pr 99.5 1.5E-13 5E-18 129.8 9.5 160 38-262 1-181 (190)
83 2qtf_A Protein HFLX, GTP-bindi 99.5 2.9E-13 9.9E-18 142.1 12.6 175 37-271 178-360 (364)
84 3con_A GTPase NRAS; structural 99.4 1.7E-13 5.8E-18 129.7 9.8 157 38-262 21-180 (190)
85 3t5g_A GTP-binding protein RHE 99.4 4E-14 1.4E-18 132.9 5.3 160 37-263 5-167 (181)
86 2ce2_X GTPase HRAS; signaling 99.4 5.5E-14 1.9E-18 129.0 6.1 155 39-261 4-161 (166)
87 2erx_A GTP-binding protein DI- 99.4 4E-14 1.4E-18 131.1 5.0 107 140-259 51-161 (172)
88 2yc2_C IFT27, small RAB-relate 99.4 7.4E-14 2.5E-18 133.8 6.9 107 140-259 73-186 (208)
89 4dcu_A GTP-binding protein ENG 99.4 2E-13 7E-18 148.0 11.1 157 37-259 22-179 (456)
90 3k53_A Ferrous iron transport 99.4 4.2E-13 1.4E-17 135.3 12.6 155 37-262 2-163 (271)
91 2hjg_A GTP-binding protein ENG 99.4 2.3E-13 7.8E-18 146.7 11.3 158 38-261 3-161 (436)
92 1zd9_A ADP-ribosylation factor 99.4 4.7E-13 1.6E-17 126.8 11.9 151 37-259 21-179 (188)
93 2h57_A ADP-ribosylation factor 99.4 1.2E-13 4.1E-18 131.0 7.7 156 37-261 20-183 (190)
94 1x3s_A RAS-related protein RAB 99.4 1.1E-13 3.7E-18 131.3 7.1 160 37-264 14-177 (195)
95 2hxs_A RAB-26, RAS-related pro 99.4 2.5E-14 8.5E-19 133.7 2.6 158 38-260 6-168 (178)
96 4dkx_A RAS-related protein RAB 99.4 1.1E-13 3.8E-18 134.8 6.9 157 39-261 14-172 (216)
97 1ksh_A ARF-like protein 2; sma 99.4 5.7E-13 2E-17 125.6 11.3 156 37-265 17-180 (186)
98 1zj6_A ADP-ribosylation factor 99.4 2.3E-13 7.9E-18 128.6 8.6 152 37-260 15-173 (187)
99 2qpt_A EH domain-containing pr 99.4 2.5E-13 8.6E-18 150.1 9.8 167 36-223 63-234 (550)
100 3cbq_A GTP-binding protein REM 99.4 2.5E-13 8.7E-18 129.8 8.5 110 140-261 72-184 (195)
101 3cpj_B GTP-binding protein YPT 99.4 5E-14 1.7E-18 137.5 3.1 158 37-260 12-171 (223)
102 2fh5_B SR-beta, signal recogni 99.4 5.7E-13 2E-17 128.8 10.5 119 37-223 6-131 (214)
103 2atv_A RERG, RAS-like estrogen 99.4 3.1E-13 1.1E-17 128.9 8.2 158 37-262 27-188 (196)
104 4dcu_A GTP-binding protein ENG 99.4 2.4E-13 8.1E-18 147.4 8.3 167 37-262 194-366 (456)
105 2hjg_A GTP-binding protein ENG 99.4 4E-13 1.4E-17 144.8 9.9 166 37-262 174-346 (436)
106 2q3h_A RAS homolog gene family 99.4 1.3E-13 4.3E-18 131.9 5.3 119 36-222 18-139 (201)
107 1fzq_A ADP-ribosylation factor 99.4 7.8E-13 2.7E-17 124.6 10.5 151 37-260 15-173 (181)
108 3c5c_A RAS-like protein 12; GD 99.4 1.6E-13 5.4E-18 130.1 5.5 156 38-261 21-182 (187)
109 3l0i_B RAS-related protein RAB 99.4 7.4E-15 2.5E-19 140.6 -4.0 155 37-257 32-188 (199)
110 2x77_A ADP-ribosylation factor 99.4 1E-13 3.5E-18 131.2 3.7 154 37-263 21-182 (189)
111 3reg_A RHO-like small GTPase; 99.4 1.1E-13 3.6E-18 131.8 3.8 157 37-261 22-184 (194)
112 1mh1_A RAC1; GTP-binding, GTPa 99.4 1.8E-13 6.3E-18 128.5 5.0 154 38-259 5-174 (186)
113 2wjg_A FEOB, ferrous iron tran 99.4 1.8E-13 6E-18 129.3 4.9 155 37-261 6-165 (188)
114 1moz_A ARL1, ADP-ribosylation 99.4 2.9E-13 9.8E-18 127.1 6.0 155 37-263 17-178 (183)
115 2b6h_A ADP-ribosylation factor 99.4 2.9E-13 1E-17 128.9 5.9 150 37-259 28-185 (192)
116 2j1l_A RHO-related GTP-binding 99.4 3.9E-13 1.3E-17 130.4 6.8 154 38-260 34-204 (214)
117 3llu_A RAS-related GTP-binding 99.4 5.7E-13 1.9E-17 127.2 7.7 156 36-258 18-190 (196)
118 2atx_A Small GTP binding prote 99.4 3.8E-13 1.3E-17 127.8 6.5 118 37-222 17-137 (194)
119 2gco_A H9, RHO-related GTP-bin 99.4 1.5E-13 5E-18 131.9 3.5 117 38-222 25-144 (201)
120 2h17_A ADP-ribosylation factor 99.4 4.6E-13 1.6E-17 126.0 6.8 149 37-257 20-175 (181)
121 3t1o_A Gliding protein MGLA; G 99.4 2.7E-13 9.2E-18 128.6 5.1 108 140-262 74-189 (198)
122 2gf0_A GTP-binding protein DI- 99.4 4.1E-13 1.4E-17 127.8 6.3 156 37-260 7-166 (199)
123 1lnz_A SPO0B-associated GTP-bi 99.4 9.6E-14 3.3E-18 144.3 2.0 163 38-262 158-327 (342)
124 3qq5_A Small GTP-binding prote 99.4 7.8E-13 2.7E-17 141.1 9.1 161 37-263 33-194 (423)
125 3q3j_B RHO-related GTP-binding 99.4 4.2E-13 1.4E-17 130.2 6.2 158 37-262 26-200 (214)
126 2e87_A Hypothetical protein PH 99.4 2.6E-12 8.9E-17 134.8 12.6 163 36-260 165-331 (357)
127 2fv8_A H6, RHO-related GTP-bin 99.4 1.5E-13 5.1E-18 132.5 2.8 117 38-222 25-144 (207)
128 3bwd_D RAC-like GTP-binding pr 99.3 9.7E-14 3.3E-18 130.1 0.6 118 37-222 7-127 (182)
129 1m7b_A RND3/RHOE small GTP-bin 99.3 6E-13 2E-17 125.5 5.5 117 37-221 6-125 (184)
130 1f6b_A SAR1; gtpases, N-termin 99.3 1.3E-12 4.3E-17 125.2 7.6 149 37-257 24-191 (198)
131 2j0v_A RAC-like GTP-binding pr 99.3 1.8E-13 6.1E-18 132.1 1.6 117 38-222 9-128 (212)
132 3th5_A RAS-related C3 botulinu 99.0 1.1E-13 3.7E-18 132.9 0.0 155 37-259 29-199 (204)
133 2iwr_A Centaurin gamma 1; ANK 99.3 1.6E-12 5.5E-17 121.5 7.9 151 38-261 7-165 (178)
134 1m2o_B GTP-binding protein SAR 99.3 1.7E-12 5.8E-17 123.4 8.0 149 37-257 22-184 (190)
135 2g3y_A GTP-binding protein GEM 99.3 2.2E-12 7.7E-17 125.0 8.2 111 140-262 87-200 (211)
136 1gwn_A RHO-related GTP-binding 99.3 1.1E-12 3.9E-17 126.4 6.0 117 37-221 27-146 (205)
137 3gj0_A GTP-binding nuclear pro 99.3 5.6E-13 1.9E-17 129.6 3.9 108 140-263 64-173 (221)
138 1h65_A Chloroplast outer envel 99.3 6.8E-12 2.3E-16 126.3 11.6 126 37-223 38-170 (270)
139 4gzl_A RAS-related C3 botulinu 99.3 3E-13 1E-17 130.1 1.3 119 37-223 29-150 (204)
140 3ihw_A Centg3; RAS, centaurin, 99.3 2.4E-12 8.3E-17 121.7 7.5 154 37-263 19-178 (184)
141 2ged_A SR-beta, signal recogni 99.3 7E-12 2.4E-16 118.8 10.4 119 37-223 47-172 (193)
142 3def_A T7I23.11 protein; chlor 99.3 2.3E-11 7.9E-16 121.9 14.0 125 37-222 35-166 (262)
143 3o47_A ADP-ribosylation factor 99.3 3.8E-12 1.3E-16 132.0 7.8 151 40-261 167-323 (329)
144 3r7w_A Gtpase1, GTP-binding pr 99.3 4.8E-12 1.6E-16 130.0 7.9 75 139-221 51-129 (307)
145 3dpu_A RAB family protein; roc 99.3 7.4E-12 2.5E-16 138.4 10.0 110 139-263 97-206 (535)
146 2wkq_A NPH1-1, RAS-related C3 99.3 2.4E-12 8.2E-17 132.9 5.2 118 37-222 154-274 (332)
147 1mky_A Probable GTP-binding pr 99.3 3E-11 1E-15 130.2 13.7 167 37-262 179-352 (439)
148 1nrj_B SR-beta, signal recogni 99.2 5.7E-12 2E-16 122.0 6.4 117 36-224 10-137 (218)
149 2cjw_A GTP-binding protein GEM 99.2 8.9E-12 3E-16 118.7 7.2 109 141-261 57-168 (192)
150 3lvq_E ARF-GAP with SH3 domain 99.2 1.3E-11 4.5E-16 135.2 9.2 151 38-261 322-480 (497)
151 2zej_A Dardarin, leucine-rich 99.2 4.4E-12 1.5E-16 119.7 4.5 104 139-256 55-169 (184)
152 1wxq_A GTP-binding protein; st 99.2 2.2E-12 7.5E-17 136.9 2.1 38 40-77 2-39 (397)
153 2f9l_A RAB11B, member RAS onco 99.2 1.2E-11 4.1E-16 118.2 5.7 161 37-263 4-166 (199)
154 4a9a_A Ribosome-interacting GT 99.2 1.9E-11 6.4E-16 128.1 7.6 122 37-220 71-195 (376)
155 3izy_P Translation initiation 99.2 1.5E-12 5E-17 142.6 -1.5 155 37-260 3-163 (537)
156 3izq_1 HBS1P, elongation facto 99.1 4.8E-11 1.6E-15 133.4 9.0 182 37-255 166-362 (611)
157 3sjy_A Translation initiation 99.1 9.9E-11 3.4E-15 124.8 10.3 103 140-257 75-184 (403)
158 2qag_A Septin-2, protein NEDD5 99.1 3.8E-11 1.3E-15 125.9 7.0 123 140-265 95-233 (361)
159 3p26_A Elongation factor 1 alp 99.1 3.6E-11 1.2E-15 131.2 6.4 104 139-257 110-230 (483)
160 3j2k_7 ERF3, eukaryotic polype 99.1 2E-10 6.8E-15 123.7 11.6 102 139-256 94-216 (439)
161 1wb1_A Translation elongation 99.1 6.1E-11 2.1E-15 129.1 7.6 105 139-261 72-185 (482)
162 1oix_A RAS-related protein RAB 99.1 5.3E-11 1.8E-15 113.1 4.1 151 37-254 28-181 (191)
163 3tr5_A RF-3, peptide chain rel 99.0 1.1E-10 3.9E-15 128.0 5.8 138 37-222 12-149 (528)
164 1s0u_A EIF-2-gamma, translatio 99.0 1.1E-09 3.7E-14 116.9 12.2 102 140-257 81-190 (408)
165 1kk1_A EIF2gamma; initiation o 99.0 8.4E-10 2.9E-14 117.8 10.9 101 140-256 83-191 (410)
166 1zun_B Sulfate adenylate trans 99.0 6E-10 2.1E-14 119.8 9.7 104 138-256 102-215 (434)
167 1zo1_I IF2, translation initia 99.0 2.8E-11 9.6E-16 131.4 -1.0 149 37-256 3-158 (501)
168 2ywe_A GTP-binding protein LEP 99.0 4E-10 1.4E-14 124.9 8.1 167 37-257 5-176 (600)
169 1f60_A Elongation factor EEF1A 99.0 1.7E-10 5.7E-15 125.0 4.5 178 38-256 7-203 (458)
170 2elf_A Protein translation elo 99.0 6.3E-10 2.1E-14 117.0 7.6 63 139-219 59-125 (370)
171 3cb4_D GTP-binding protein LEP 99.0 4E-10 1.4E-14 125.2 6.4 167 37-258 3-175 (599)
172 1g7s_A Translation initiation 98.9 1.9E-10 6.5E-15 127.8 2.9 67 140-221 70-136 (594)
173 1pui_A ENGB, probable GTP-bind 98.9 1.1E-09 3.8E-14 105.0 7.9 114 141-259 73-193 (210)
174 2c78_A Elongation factor TU-A; 98.9 8.5E-10 2.9E-14 117.6 7.6 68 138-221 73-142 (405)
175 2www_A Methylmalonic aciduria 98.9 1.5E-09 5.1E-14 113.3 8.7 104 139-264 166-278 (349)
176 1udx_A The GTP-binding protein 98.9 9.7E-10 3.3E-14 116.9 7.4 165 37-263 156-323 (416)
177 3p32_A Probable GTPase RV1496/ 98.9 1.2E-09 4.2E-14 114.3 8.0 104 139-264 171-283 (355)
178 1jny_A EF-1-alpha, elongation 98.9 1.4E-09 4.8E-14 117.0 8.7 103 139-256 83-204 (435)
179 1jal_A YCHF protein; nucleotid 98.9 8.3E-10 2.8E-14 115.0 5.6 37 39-75 3-39 (363)
180 3r7w_B Gtpase2, GTP-binding pr 98.9 2.2E-09 7.5E-14 109.9 7.8 72 139-222 45-121 (331)
181 2h5e_A Peptide chain release f 98.9 4E-09 1.4E-13 115.8 10.0 70 139-223 81-150 (529)
182 2qag_C Septin-7; cell cycle, c 98.9 3.2E-09 1.1E-13 112.9 8.9 81 140-222 88-182 (418)
183 3c5h_A Glucocorticoid receptor 98.9 5E-10 1.7E-14 111.6 2.1 83 176-260 162-250 (255)
184 1r5b_A Eukaryotic peptide chai 98.8 2E-09 7E-14 116.7 5.3 102 139-256 120-243 (467)
185 2dby_A GTP-binding protein; GD 98.8 9E-09 3.1E-13 107.7 9.6 110 39-188 2-111 (368)
186 2qnr_A Septin-2, protein NEDD5 98.8 5.2E-09 1.8E-13 106.9 6.3 124 140-266 76-215 (301)
187 3mca_A HBS1, elongation factor 98.8 1.3E-10 4.5E-15 129.5 -6.7 101 139-255 254-373 (592)
188 1d2e_A Elongation factor TU (E 98.8 1.7E-08 5.8E-13 107.2 9.8 68 138-221 64-133 (397)
189 3avx_A Elongation factor TS, e 98.7 1.3E-08 4.3E-13 118.6 7.9 96 138-249 357-462 (1289)
190 2xex_A Elongation factor G; GT 98.7 9.1E-09 3.1E-13 116.7 5.5 69 139-222 74-142 (693)
191 2rdo_7 EF-G, elongation factor 98.7 7.8E-08 2.7E-12 109.2 13.0 68 140-222 82-149 (704)
192 2qag_B Septin-6, protein NEDD5 98.7 3.6E-08 1.2E-12 104.5 9.3 82 140-223 95-192 (427)
193 1dar_A EF-G, elongation factor 98.7 1.8E-08 6.2E-13 114.2 7.5 69 139-222 76-144 (691)
194 2dy1_A Elongation factor G; tr 98.7 1.2E-08 3.9E-13 115.4 5.0 132 37-220 8-139 (665)
195 2ohf_A Protein OLA1, GTP-bindi 98.7 2.6E-08 9E-13 104.7 7.4 107 37-187 21-127 (396)
196 2p67_A LAO/AO transport system 98.6 2.4E-08 8.1E-13 103.8 6.6 101 139-262 148-258 (341)
197 3ec1_A YQEH GTPase; atnos1, at 98.6 6.6E-09 2.3E-13 109.2 2.2 23 39-61 163-185 (369)
198 1n0u_A EF-2, elongation factor 98.6 2.5E-08 8.6E-13 115.5 4.4 67 139-220 97-163 (842)
199 2qm8_A GTPase/ATPase; G protei 98.5 2.2E-07 7.5E-12 96.3 10.7 25 37-61 54-78 (337)
200 3h2y_A GTPase family protein; 98.5 2.1E-08 7.2E-13 105.2 2.7 24 39-62 161-184 (368)
201 1yrb_A ATP(GTP)binding protein 98.5 1.6E-07 5.4E-12 93.3 7.6 23 37-59 13-35 (262)
202 2wsm_A Hydrogenase expression/ 98.4 1.9E-08 6.6E-13 97.3 -0.4 25 37-61 29-53 (221)
203 3sop_A Neuronal-specific septi 98.4 4.6E-07 1.6E-11 90.9 9.0 82 140-223 60-156 (270)
204 2j37_W Signal recognition part 98.4 6.4E-07 2.2E-11 97.3 9.3 78 139-228 183-261 (504)
205 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 3E-07 1E-11 96.8 5.9 41 37-77 19-60 (392)
206 3vqt_A RF-3, peptide chain rel 98.3 5E-07 1.7E-11 99.6 6.7 81 124-222 87-167 (548)
207 1f5n_A Interferon-induced guan 98.3 2.4E-06 8.2E-11 94.3 10.4 27 37-63 37-63 (592)
208 1puj_A YLQF, conserved hypothe 98.2 1.7E-06 5.8E-11 87.3 8.2 26 38-63 120-145 (282)
209 1tq4_A IIGP1, interferon-induc 98.2 4.8E-06 1.6E-10 88.2 11.6 120 38-220 69-188 (413)
210 3dm5_A SRP54, signal recogniti 98.2 5E-06 1.7E-10 88.5 11.7 80 139-229 182-261 (443)
211 2hf9_A Probable hydrogenase ni 98.2 5.2E-07 1.8E-11 87.4 3.5 27 37-63 37-63 (226)
212 3j25_A Tetracycline resistance 98.1 1E-06 3.5E-11 99.0 4.6 71 138-223 65-135 (638)
213 4fn5_A EF-G 1, elongation fact 98.1 2E-06 7E-11 97.8 6.4 137 37-222 12-152 (709)
214 2v3c_C SRP54, signal recogniti 98.0 8.9E-06 3E-10 86.9 7.5 79 138-228 179-259 (432)
215 3kl4_A SRP54, signal recogniti 97.9 2.5E-05 8.5E-10 83.1 9.4 82 139-229 179-260 (433)
216 3cnl_A YLQF, putative uncharac 97.9 6.9E-06 2.4E-10 81.8 4.7 25 39-63 100-124 (262)
217 1rj9_A FTSY, signal recognitio 97.7 8.1E-05 2.8E-09 75.7 9.3 86 140-230 185-270 (304)
218 2yhs_A FTSY, cell division pro 97.6 0.00056 1.9E-08 73.5 13.8 84 139-231 375-462 (503)
219 3e70_C DPA, signal recognition 97.5 0.00036 1.2E-08 71.6 11.2 80 140-230 212-291 (328)
220 2xxa_A Signal recognition part 97.5 0.00012 4.2E-09 78.1 7.0 78 139-228 183-261 (433)
221 3q5d_A Atlastin-1; G protein, 97.5 0.00013 4.5E-09 77.8 7.1 24 38-61 67-90 (447)
222 1j8m_F SRP54, signal recogniti 97.5 0.00035 1.2E-08 70.7 9.9 82 139-229 180-261 (297)
223 1vma_A Cell division protein F 97.4 7.9E-05 2.7E-09 75.8 3.8 83 139-230 186-272 (306)
224 2px0_A Flagellar biosynthesis 97.2 0.0022 7.5E-08 64.8 12.1 23 39-61 106-128 (296)
225 1zu4_A FTSY; GTPase, signal re 97.1 0.0052 1.8E-07 62.8 14.1 83 139-230 191-277 (320)
226 2og2_A Putative signal recogni 97.0 0.0017 5.7E-08 67.4 8.9 85 141-230 242-326 (359)
227 2ffh_A Protein (FFH); SRP54, s 97.0 0.0015 5.2E-08 69.2 8.6 79 139-229 180-259 (425)
228 3b9q_A Chloroplast SRP recepto 96.9 0.002 6.9E-08 65.3 8.8 85 141-230 185-269 (302)
229 1cip_A Protein (guanine nucleo 96.7 0.0004 1.4E-08 72.1 1.7 69 139-220 192-273 (353)
230 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0014 4.7E-08 68.2 5.0 69 139-220 200-281 (362)
231 1u0l_A Probable GTPase ENGC; p 96.6 0.00019 6.4E-09 72.9 -1.6 96 141-256 64-164 (301)
232 1ls1_A Signal recognition part 96.6 0.0027 9.4E-08 64.0 6.9 81 139-230 180-260 (295)
233 1t9h_A YLOQ, probable GTPase E 96.3 0.0014 4.9E-08 66.4 2.7 24 39-62 174-197 (307)
234 3ohm_A Guanine nucleotide-bind 96.3 0.002 6.9E-08 65.9 3.5 70 139-221 166-248 (327)
235 4fid_A G protein alpha subunit 96.0 0.0091 3.1E-07 61.3 6.8 71 138-221 159-242 (340)
236 2yv5_A YJEQ protein; hydrolase 95.5 0.0028 9.6E-08 64.2 0.7 88 168-255 71-159 (302)
237 2yv5_A YJEQ protein; hydrolase 95.4 0.023 8E-07 57.3 7.0 22 39-61 166-187 (302)
238 1azs_C GS-alpha; complex (lyas 95.0 0.016 5.4E-07 60.9 4.5 70 139-221 216-298 (402)
239 3ney_A 55 kDa erythrocyte memb 95.0 0.0089 3E-07 56.5 2.3 24 38-61 19-42 (197)
240 4ido_A Atlastin-1; GTPase, GTP 95.0 0.028 9.4E-07 59.7 6.3 22 38-59 67-88 (457)
241 3tif_A Uncharacterized ABC tra 94.8 0.014 4.8E-07 56.7 3.3 22 40-61 33-54 (235)
242 1ex7_A Guanylate kinase; subst 94.8 0.011 3.6E-07 55.4 2.2 35 41-75 4-40 (186)
243 4dzz_A Plasmid partitioning pr 94.8 0.087 3E-06 49.1 8.7 67 139-220 75-143 (206)
244 2pcj_A ABC transporter, lipopr 94.7 0.015 5.1E-07 56.1 3.0 22 40-61 32-53 (224)
245 1kgd_A CASK, peripheral plasma 94.7 0.013 4.3E-07 54.3 2.4 22 40-61 7-28 (180)
246 4g1u_C Hemin import ATP-bindin 94.6 0.018 6.3E-07 57.0 3.6 22 40-61 39-60 (266)
247 1mv5_A LMRA, multidrug resista 94.6 0.021 7.1E-07 55.8 4.0 22 40-61 30-51 (243)
248 1lvg_A Guanylate kinase, GMP k 94.6 0.013 4.6E-07 55.1 2.4 22 40-61 6-27 (198)
249 1sgw_A Putative ABC transporte 94.6 0.018 6.3E-07 55.1 3.4 22 40-61 37-58 (214)
250 1g6h_A High-affinity branched- 94.6 0.017 6E-07 56.8 3.3 22 40-61 35-56 (257)
251 2rcn_A Probable GTPase ENGC; Y 94.6 0.022 7.4E-07 58.9 4.1 23 40-62 217-239 (358)
252 1ye8_A Protein THEP1, hypothet 94.6 0.015 5.1E-07 54.0 2.6 22 40-61 2-23 (178)
253 3gfo_A Cobalt import ATP-bindi 94.5 0.018 6.2E-07 57.3 3.4 22 40-61 36-57 (275)
254 3c8u_A Fructokinase; YP_612366 94.5 0.023 7.7E-07 53.8 3.9 23 39-61 23-45 (208)
255 1b0u_A Histidine permease; ABC 94.5 0.019 6.6E-07 56.7 3.4 22 40-61 34-55 (262)
256 2xtz_A Guanine nucleotide-bind 94.5 0.0099 3.4E-07 61.5 1.3 70 139-221 182-264 (354)
257 2onk_A Molybdate/tungstate ABC 94.5 0.02 6.8E-07 55.8 3.4 23 39-61 25-47 (240)
258 2pze_A Cystic fibrosis transme 94.4 0.022 7.4E-07 55.1 3.5 22 40-61 36-57 (229)
259 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.017 5.8E-07 59.2 2.8 31 40-72 173-203 (330)
260 2gza_A Type IV secretion syste 94.4 0.019 6.4E-07 59.6 3.1 31 40-72 177-207 (361)
261 2cbz_A Multidrug resistance-as 94.4 0.019 6.6E-07 55.8 3.0 22 40-61 33-54 (237)
262 3h2y_A GTPase family protein; 94.4 0.02 6.9E-07 59.5 3.4 93 164-260 57-155 (368)
263 3tau_A Guanylate kinase, GMP k 94.4 0.02 7E-07 54.2 3.2 23 39-61 9-31 (208)
264 2ff7_A Alpha-hemolysin translo 94.3 0.022 7.7E-07 55.7 3.5 22 40-61 37-58 (247)
265 1znw_A Guanylate kinase, GMP k 94.3 0.016 5.4E-07 54.9 2.3 22 40-61 22-43 (207)
266 1ji0_A ABC transporter; ATP bi 94.3 0.022 7.5E-07 55.5 3.3 22 40-61 34-55 (240)
267 1zp6_A Hypothetical protein AT 94.3 0.02 6.7E-07 53.1 2.9 22 40-61 11-32 (191)
268 1puj_A YLQF, conserved hypothe 94.3 0.053 1.8E-06 54.1 6.1 86 166-259 13-100 (282)
269 2olj_A Amino acid ABC transpor 94.2 0.023 8E-07 56.1 3.4 22 40-61 52-73 (263)
270 1vpl_A ABC transporter, ATP-bi 94.2 0.024 8E-07 55.9 3.4 22 40-61 43-64 (256)
271 1u0l_A Probable GTPase ENGC; p 94.2 0.025 8.7E-07 57.0 3.7 24 39-62 170-193 (301)
272 2nq2_C Hypothetical ABC transp 94.2 0.024 8.2E-07 55.7 3.3 31 40-72 33-63 (253)
273 2oap_1 GSPE-2, type II secreti 94.2 0.02 6.7E-07 62.3 2.9 31 40-72 262-292 (511)
274 3tr0_A Guanylate kinase, GMP k 94.2 0.018 6.3E-07 53.9 2.4 22 40-61 9-30 (205)
275 2ixe_A Antigen peptide transpo 94.1 0.026 9E-07 56.0 3.5 22 40-61 47-68 (271)
276 2ihy_A ABC transporter, ATP-bi 94.1 0.027 9.4E-07 56.2 3.5 22 40-61 49-70 (279)
277 1s96_A Guanylate kinase, GMP k 94.1 0.02 6.8E-07 55.0 2.4 23 39-61 17-39 (219)
278 2yz2_A Putative ABC transporte 94.0 0.027 9.2E-07 55.8 3.3 22 40-61 35-56 (266)
279 2qi9_C Vitamin B12 import ATP- 94.0 0.029 9.8E-07 55.0 3.3 23 40-62 28-50 (249)
280 3a00_A Guanylate kinase, GMP k 93.9 0.021 7.3E-07 53.0 2.3 22 40-61 3-24 (186)
281 1np6_A Molybdopterin-guanine d 93.9 0.027 9.3E-07 52.0 2.8 25 37-61 5-29 (174)
282 1z6g_A Guanylate kinase; struc 93.9 0.022 7.7E-07 54.5 2.3 22 40-61 25-46 (218)
283 2d2e_A SUFC protein; ABC-ATPas 93.8 0.029 1E-06 54.9 3.1 22 40-61 31-52 (250)
284 3nh6_A ATP-binding cassette SU 93.8 0.023 8E-07 57.4 2.4 22 40-61 82-103 (306)
285 4gp7_A Metallophosphoesterase; 93.5 0.037 1.3E-06 50.7 3.0 21 40-60 11-31 (171)
286 2zu0_C Probable ATP-dependent 93.4 0.037 1.3E-06 54.8 3.1 22 40-61 48-69 (267)
287 1kag_A SKI, shikimate kinase I 93.4 0.032 1.1E-06 50.7 2.4 22 40-61 6-27 (173)
288 3asz_A Uridine kinase; cytidin 93.2 0.032 1.1E-06 52.7 2.2 22 40-61 8-29 (211)
289 1htw_A HI0065; nucleotide-bind 93.2 0.035 1.2E-06 50.3 2.3 22 40-61 35-56 (158)
290 2ghi_A Transport protein; mult 93.2 0.044 1.5E-06 54.0 3.2 23 40-62 48-70 (260)
291 1odf_A YGR205W, hypothetical 3 93.2 0.08 2.7E-06 53.0 5.2 24 38-61 31-54 (290)
292 2eyu_A Twitching motility prot 93.1 0.036 1.2E-06 54.7 2.4 22 40-61 27-48 (261)
293 2j41_A Guanylate kinase; GMP, 93.1 0.038 1.3E-06 51.8 2.5 22 40-61 8-29 (207)
294 2f1r_A Molybdopterin-guanine d 93.1 0.02 6.8E-07 52.8 0.5 23 39-61 3-25 (171)
295 2bbs_A Cystic fibrosis transme 93.0 0.042 1.4E-06 55.1 2.9 22 40-61 66-87 (290)
296 1t9h_A YLOQ, probable GTPase E 93.0 0.04 1.4E-06 55.7 2.6 53 171-223 81-133 (307)
297 2v9p_A Replication protein E1; 93.0 0.039 1.3E-06 55.7 2.5 22 40-61 128-149 (305)
298 3l82_B F-box only protein 4; T 93.0 0.095 3.2E-06 49.8 4.9 95 164-259 113-217 (227)
299 3lw7_A Adenylate kinase relate 92.9 0.056 1.9E-06 48.7 3.2 20 39-58 2-21 (179)
300 4eun_A Thermoresistant glucoki 92.8 0.042 1.4E-06 51.5 2.4 23 39-61 30-52 (200)
301 2bbw_A Adenylate kinase 4, AK4 92.8 0.057 1.9E-06 52.4 3.3 25 38-62 27-54 (246)
302 3b85_A Phosphate starvation-in 92.8 0.038 1.3E-06 52.6 1.9 22 40-61 24-45 (208)
303 2bdt_A BH3686; alpha-beta prot 92.7 0.044 1.5E-06 50.7 2.3 21 40-60 4-24 (189)
304 1z47_A CYSA, putative ABC-tran 92.7 0.058 2E-06 55.7 3.3 23 40-62 43-65 (355)
305 3tui_C Methionine import ATP-b 92.6 0.06 2E-06 55.7 3.4 23 40-62 56-78 (366)
306 2pjz_A Hypothetical protein ST 92.6 0.062 2.1E-06 53.1 3.3 23 40-62 32-54 (263)
307 2it1_A 362AA long hypothetical 92.5 0.063 2.2E-06 55.5 3.4 23 40-62 31-53 (362)
308 3kb2_A SPBC2 prophage-derived 92.5 0.067 2.3E-06 48.3 3.2 22 40-61 3-24 (173)
309 3ec1_A YQEH GTPase; atnos1, at 92.5 0.036 1.2E-06 57.6 1.5 119 164-293 59-184 (369)
310 2yyz_A Sugar ABC transporter, 92.5 0.063 2.2E-06 55.5 3.3 23 40-62 31-53 (359)
311 3fvq_A Fe(3+) IONS import ATP- 92.5 0.056 1.9E-06 55.8 2.9 23 40-62 32-54 (359)
312 3rlf_A Maltose/maltodextrin im 92.4 0.065 2.2E-06 55.8 3.4 23 40-62 31-53 (381)
313 1cke_A CK, MSSA, protein (cyti 92.4 0.057 2E-06 51.4 2.7 23 39-61 6-28 (227)
314 1knq_A Gluconate kinase; ALFA/ 92.4 0.052 1.8E-06 49.5 2.3 23 39-61 9-31 (175)
315 1g29_1 MALK, maltose transport 92.3 0.067 2.3E-06 55.6 3.3 23 40-62 31-53 (372)
316 3aez_A Pantothenate kinase; tr 92.3 0.051 1.8E-06 55.1 2.4 22 40-61 92-113 (312)
317 2i3b_A HCR-ntpase, human cance 92.3 0.054 1.9E-06 50.6 2.4 22 40-61 3-24 (189)
318 2qor_A Guanylate kinase; phosp 92.3 0.077 2.6E-06 49.9 3.4 25 37-61 11-35 (204)
319 3lnc_A Guanylate kinase, GMP k 92.2 0.044 1.5E-06 52.7 1.7 23 39-61 28-51 (231)
320 1v43_A Sugar-binding transport 92.2 0.072 2.5E-06 55.3 3.4 23 40-62 39-61 (372)
321 1rz3_A Hypothetical protein rb 92.1 0.1 3.5E-06 48.9 4.1 23 39-61 23-45 (201)
322 3kta_A Chromosome segregation 92.1 0.054 1.8E-06 49.7 2.0 23 39-61 27-49 (182)
323 4a74_A DNA repair and recombin 92.1 0.079 2.7E-06 50.3 3.3 30 40-69 27-56 (231)
324 3end_A Light-independent proto 92.0 0.33 1.1E-05 48.6 8.0 22 38-59 41-62 (307)
325 3jvv_A Twitching mobility prot 92.0 0.057 2E-06 55.8 2.3 22 40-61 125-146 (356)
326 1xjc_A MOBB protein homolog; s 92.0 0.091 3.1E-06 48.2 3.4 25 37-61 3-27 (169)
327 3uie_A Adenylyl-sulfate kinase 91.9 0.063 2.1E-06 50.3 2.3 23 39-61 26-48 (200)
328 3d31_A Sulfate/molybdate ABC t 91.8 0.061 2.1E-06 55.4 2.2 23 40-62 28-50 (348)
329 4e22_A Cytidylate kinase; P-lo 91.8 0.069 2.4E-06 52.2 2.5 26 38-63 27-55 (252)
330 1jjv_A Dephospho-COA kinase; P 91.7 0.086 3E-06 49.4 3.0 21 40-60 4-24 (206)
331 2if2_A Dephospho-COA kinase; a 91.6 0.072 2.4E-06 49.9 2.4 21 40-60 3-23 (204)
332 3t61_A Gluconokinase; PSI-biol 91.5 0.076 2.6E-06 49.7 2.4 23 39-61 19-41 (202)
333 1lw7_A Transcriptional regulat 91.5 0.066 2.3E-06 55.4 2.1 23 39-61 171-193 (365)
334 2jeo_A Uridine-cytidine kinase 91.4 0.075 2.6E-06 51.6 2.3 22 40-61 27-48 (245)
335 3ec2_A DNA replication protein 91.4 0.14 4.9E-06 46.8 4.1 23 39-61 39-61 (180)
336 1ly1_A Polynucleotide kinase; 91.4 0.097 3.3E-06 47.6 3.0 21 40-60 4-24 (181)
337 2jaq_A Deoxyguanosine kinase; 91.4 0.11 3.7E-06 48.3 3.3 22 40-61 2-23 (205)
338 1oxx_K GLCV, glucose, ABC tran 91.3 0.058 2E-06 55.7 1.5 23 40-62 33-55 (353)
339 2qt1_A Nicotinamide riboside k 91.2 0.1 3.5E-06 49.0 3.0 22 40-61 23-44 (207)
340 4f4c_A Multidrug resistance pr 91.1 0.15 5E-06 61.9 4.9 22 40-61 446-467 (1321)
341 1qhx_A CPT, protein (chloramph 91.0 0.11 3.8E-06 47.2 3.0 22 40-61 5-26 (178)
342 1f2t_A RAD50 ABC-ATPase; DNA d 91.0 0.11 3.7E-06 46.5 2.7 21 39-59 24-44 (149)
343 2ewv_A Twitching motility prot 91.0 0.084 2.9E-06 54.9 2.3 22 40-61 138-159 (372)
344 2kjq_A DNAA-related protein; s 90.9 0.072 2.5E-06 47.6 1.5 24 38-61 36-59 (149)
345 1p9r_A General secretion pathw 90.9 0.087 3E-06 55.6 2.3 22 40-61 169-190 (418)
346 3trf_A Shikimate kinase, SK; a 90.8 0.13 4.6E-06 47.1 3.3 22 38-59 5-26 (185)
347 1sq5_A Pantothenate kinase; P- 90.7 0.086 2.9E-06 53.2 2.0 22 40-61 82-103 (308)
348 3vaa_A Shikimate kinase, SK; s 90.7 0.14 4.7E-06 47.9 3.3 22 39-60 26-47 (199)
349 2iyv_A Shikimate kinase, SK; t 90.6 0.13 4.3E-06 47.2 3.0 22 39-60 3-24 (184)
350 1y63_A LMAJ004144AAA protein; 90.6 0.14 4.8E-06 47.2 3.3 25 37-61 9-33 (184)
351 1nij_A Hypothetical protein YJ 90.6 0.067 2.3E-06 54.3 1.1 25 37-61 3-27 (318)
352 1kht_A Adenylate kinase; phosp 90.5 0.13 4.5E-06 47.2 3.0 21 40-60 5-25 (192)
353 1via_A Shikimate kinase; struc 90.5 0.14 4.8E-06 46.6 3.1 22 39-60 5-26 (175)
354 2ehv_A Hypothetical protein PH 90.5 0.11 3.6E-06 50.1 2.4 21 40-60 32-52 (251)
355 2vp4_A Deoxynucleoside kinase; 90.4 0.11 3.8E-06 49.9 2.4 22 40-61 22-43 (230)
356 1nks_A Adenylate kinase; therm 90.4 0.12 4.1E-06 47.5 2.6 21 40-60 3-23 (194)
357 4a82_A Cystic fibrosis transme 90.2 0.12 4.2E-06 56.9 2.9 22 40-61 369-390 (578)
358 3b5x_A Lipid A export ATP-bind 90.2 0.15 5.3E-06 56.2 3.7 22 40-61 371-392 (582)
359 3gd7_A Fusion complex of cysti 90.1 0.13 4.3E-06 53.8 2.7 22 40-61 49-70 (390)
360 3b60_A Lipid A export ATP-bind 90.0 0.14 4.7E-06 56.6 3.1 22 40-61 371-392 (582)
361 3qf4_A ABC transporter, ATP-bi 90.0 0.14 4.7E-06 56.6 3.1 22 40-61 371-392 (587)
362 3cm0_A Adenylate kinase; ATP-b 90.0 0.16 5.3E-06 46.6 3.0 20 40-59 6-25 (186)
363 3fb4_A Adenylate kinase; psych 89.9 0.16 5.5E-06 47.9 3.1 21 40-60 2-22 (216)
364 2npi_A Protein CLP1; CLP1-PCF1 89.9 0.11 3.8E-06 55.6 2.1 25 37-61 137-161 (460)
365 3iij_A Coilin-interacting nucl 89.9 0.18 6.1E-06 46.1 3.3 23 37-59 10-32 (180)
366 3qf4_B Uncharacterized ABC tra 89.8 0.14 4.8E-06 56.7 2.9 22 40-61 383-404 (598)
367 2yl4_A ATP-binding cassette SU 89.8 0.13 4.6E-06 56.8 2.8 22 40-61 372-393 (595)
368 2rhm_A Putative kinase; P-loop 89.8 0.14 4.9E-06 47.1 2.5 21 40-60 7-27 (193)
369 3tqc_A Pantothenate kinase; bi 89.8 0.13 4.4E-06 52.3 2.4 22 40-61 94-115 (321)
370 3euj_A Chromosome partition pr 89.7 0.12 4.2E-06 55.4 2.3 23 39-61 30-52 (483)
371 2c95_A Adenylate kinase 1; tra 89.7 0.18 6.2E-06 46.5 3.2 23 38-60 9-31 (196)
372 2plr_A DTMP kinase, probable t 89.6 0.17 5.9E-06 47.2 3.0 21 40-60 6-26 (213)
373 3ozx_A RNAse L inhibitor; ATP 89.6 0.21 7.1E-06 54.6 4.0 30 40-71 296-325 (538)
374 3dl0_A Adenylate kinase; phosp 89.5 0.18 6.2E-06 47.6 3.1 21 40-60 2-22 (216)
375 2cdn_A Adenylate kinase; phosp 89.5 0.23 7.7E-06 46.3 3.8 21 40-60 22-42 (201)
376 2v54_A DTMP kinase, thymidylat 89.5 0.2 6.7E-06 46.6 3.3 23 39-61 5-27 (204)
377 1e6c_A Shikimate kinase; phosp 89.5 0.19 6.5E-06 45.3 3.1 22 39-60 3-24 (173)
378 1yqt_A RNAse L inhibitor; ATP- 89.5 0.22 7.6E-06 54.3 4.2 31 40-72 314-344 (538)
379 3qf7_A RAD50; ABC-ATPase, ATPa 89.4 0.17 5.7E-06 52.4 3.0 23 38-60 23-45 (365)
380 2pez_A Bifunctional 3'-phospho 89.3 0.16 5.4E-06 46.4 2.4 22 40-61 7-28 (179)
381 2z0h_A DTMP kinase, thymidylat 89.2 0.19 6.5E-06 46.4 2.9 21 40-60 2-22 (197)
382 3j16_B RLI1P; ribosome recycli 89.0 0.25 8.7E-06 54.6 4.2 22 40-61 105-126 (608)
383 3bk7_A ABC transporter ATP-bin 88.9 0.26 8.7E-06 54.7 4.2 31 40-72 384-414 (607)
384 2pt5_A Shikimate kinase, SK; a 88.8 0.23 7.7E-06 44.6 3.1 21 40-60 2-22 (168)
385 2bwj_A Adenylate kinase 5; pho 88.8 0.21 7.2E-06 46.2 2.9 22 39-60 13-34 (199)
386 1tev_A UMP-CMP kinase; ploop, 88.8 0.21 7.3E-06 45.8 3.0 21 40-60 5-25 (196)
387 2pbr_A DTMP kinase, thymidylat 88.8 0.21 7.1E-06 45.9 2.9 21 40-60 2-22 (195)
388 1uf9_A TT1252 protein; P-loop, 88.7 0.2 6.9E-06 46.4 2.7 24 38-61 8-31 (203)
389 1in4_A RUVB, holliday junction 88.7 0.3 1E-05 49.7 4.2 24 38-61 51-74 (334)
390 1ixz_A ATP-dependent metallopr 88.7 0.18 6E-06 49.0 2.4 21 41-61 52-72 (254)
391 2yvu_A Probable adenylyl-sulfa 88.6 0.22 7.7E-06 45.7 3.0 23 39-61 14-36 (186)
392 2x8a_A Nuclear valosin-contain 88.6 0.18 6E-06 50.0 2.3 21 41-61 47-67 (274)
393 3bk7_A ABC transporter ATP-bin 88.6 0.26 9E-06 54.6 4.0 22 40-61 119-140 (607)
394 1yqt_A RNAse L inhibitor; ATP- 88.5 0.22 7.6E-06 54.3 3.3 22 40-61 49-70 (538)
395 2wwf_A Thymidilate kinase, put 88.4 0.2 6.7E-06 46.9 2.5 23 38-60 10-32 (212)
396 2w0m_A SSO2452; RECA, SSPF, un 88.3 0.19 6.5E-06 47.5 2.3 22 40-61 25-46 (235)
397 1nn5_A Similar to deoxythymidy 88.2 0.21 7.2E-06 46.8 2.5 22 39-60 10-31 (215)
398 1gvn_B Zeta; postsegregational 88.2 0.48 1.6E-05 47.2 5.3 21 40-60 35-55 (287)
399 3nwj_A ATSK2; P loop, shikimat 88.1 0.21 7E-06 48.9 2.4 23 38-60 48-70 (250)
400 1zd8_A GTP:AMP phosphotransfer 88.1 0.24 8.3E-06 47.2 2.9 23 38-60 7-29 (227)
401 1gtv_A TMK, thymidylate kinase 88.0 0.11 3.7E-06 48.9 0.3 22 40-61 2-23 (214)
402 3thx_A DNA mismatch repair pro 88.0 1.6 5.3E-05 50.8 10.1 19 40-58 664-682 (934)
403 2p5t_B PEZT; postsegregational 87.9 0.4 1.4E-05 46.6 4.4 23 39-61 33-55 (253)
404 3a4m_A L-seryl-tRNA(SEC) kinas 87.8 0.24 8.3E-06 48.5 2.8 22 39-60 5-26 (260)
405 3ake_A Cytidylate kinase; CMP 87.8 0.29 9.8E-06 45.6 3.2 22 39-60 3-24 (208)
406 1aky_A Adenylate kinase; ATP:A 87.8 0.29 1E-05 46.3 3.3 22 39-60 5-26 (220)
407 3qks_A DNA double-strand break 87.7 0.25 8.6E-06 46.5 2.7 21 39-59 24-44 (203)
408 1vht_A Dephospho-COA kinase; s 87.7 0.27 9.1E-06 46.5 2.9 21 40-60 6-26 (218)
409 2ga8_A Hypothetical 39.9 kDa p 87.6 0.5 1.7E-05 48.5 5.0 25 37-61 23-47 (359)
410 1cr0_A DNA primase/helicase; R 87.6 0.19 6.6E-06 50.0 2.0 22 40-61 37-58 (296)
411 1e4v_A Adenylate kinase; trans 87.6 0.26 8.8E-06 46.5 2.7 21 40-60 2-22 (214)
412 1qf9_A UMP/CMP kinase, protein 87.6 0.25 8.4E-06 45.3 2.5 22 39-60 7-28 (194)
413 3ozx_A RNAse L inhibitor; ATP 87.6 0.26 8.9E-06 53.8 3.1 22 40-61 27-48 (538)
414 1jbk_A CLPB protein; beta barr 87.6 0.65 2.2E-05 41.8 5.4 24 38-61 43-66 (195)
415 1ukz_A Uridylate kinase; trans 87.5 0.29 9.8E-06 45.6 3.0 23 38-60 15-37 (203)
416 1zak_A Adenylate kinase; ATP:A 87.5 0.26 8.8E-06 46.8 2.7 22 39-60 6-27 (222)
417 3tlx_A Adenylate kinase 2; str 87.5 0.59 2E-05 45.2 5.3 22 39-60 30-51 (243)
418 2vli_A Antibiotic resistance p 87.4 0.24 8.1E-06 45.2 2.3 22 39-60 6-27 (183)
419 1iy2_A ATP-dependent metallopr 87.2 0.24 8.3E-06 48.8 2.4 21 41-61 76-96 (278)
420 3n70_A Transport activator; si 87.2 0.77 2.6E-05 40.3 5.5 22 40-61 26-47 (145)
421 1zuh_A Shikimate kinase; alpha 86.9 0.34 1.2E-05 43.6 3.0 23 38-60 7-29 (168)
422 3j16_B RLI1P; ribosome recycli 86.6 0.39 1.3E-05 53.2 3.8 22 41-62 381-402 (608)
423 2ze6_A Isopentenyl transferase 86.6 0.34 1.1E-05 47.3 3.0 22 40-61 3-24 (253)
424 2xb4_A Adenylate kinase; ATP-b 86.5 0.37 1.3E-05 45.9 3.1 21 40-60 2-22 (223)
425 1ak2_A Adenylate kinase isoenz 86.4 0.44 1.5E-05 45.6 3.6 23 38-60 16-38 (233)
426 1m7g_A Adenylylsulfate kinase; 86.4 0.29 1E-05 46.1 2.3 22 40-61 27-48 (211)
427 1svm_A Large T antigen; AAA+ f 86.2 0.28 9.7E-06 50.9 2.3 22 40-61 171-192 (377)
428 1qhl_A Protein (cell division 86.2 0.067 2.3E-06 51.6 -2.3 21 41-61 30-50 (227)
429 1lv7_A FTSH; alpha/beta domain 86.2 0.5 1.7E-05 45.8 4.0 22 40-61 47-68 (257)
430 2grj_A Dephospho-COA kinase; T 86.2 0.37 1.3E-05 45.0 2.9 22 39-60 13-34 (192)
431 3cnl_A YLQF, putative uncharac 86.1 0.15 5.2E-06 50.2 0.2 76 167-253 12-89 (262)
432 2cvh_A DNA repair and recombin 86.0 0.31 1.1E-05 45.7 2.3 21 40-60 22-42 (220)
433 2dhr_A FTSH; AAA+ protein, hex 85.8 0.57 1.9E-05 50.5 4.5 22 40-61 66-87 (499)
434 4f4c_A Multidrug resistance pr 85.8 0.29 9.9E-06 59.3 2.5 22 40-61 1107-1128(1321)
435 1n0w_A DNA repair protein RAD5 85.8 0.33 1.1E-05 46.4 2.4 22 40-61 26-47 (243)
436 3be4_A Adenylate kinase; malar 85.5 0.41 1.4E-05 45.3 2.9 22 39-60 6-27 (217)
437 3qkt_A DNA double-strand break 85.4 0.37 1.3E-05 49.2 2.7 22 39-60 24-45 (339)
438 1fnn_A CDC6P, cell division co 85.4 0.76 2.6E-05 47.1 5.2 24 38-61 44-67 (389)
439 3g5u_A MCG1178, multidrug resi 85.2 0.41 1.4E-05 57.9 3.3 22 40-61 418-439 (1284)
440 2obl_A ESCN; ATPase, hydrolase 85.1 0.33 1.1E-05 49.8 2.2 23 40-62 73-95 (347)
441 2iw3_A Elongation factor 3A; a 85.0 0.31 1E-05 56.7 2.0 22 40-61 701-722 (986)
442 3l2o_B F-box only protein 4; s 84.8 0.41 1.4E-05 47.6 2.6 96 165-261 199-304 (312)
443 1q3t_A Cytidylate kinase; nucl 84.8 0.47 1.6E-05 45.5 3.0 24 37-60 15-38 (236)
444 4eaq_A DTMP kinase, thymidylat 84.8 0.47 1.6E-05 45.5 3.0 23 39-61 27-49 (229)
445 1sxj_E Activator 1 40 kDa subu 84.5 0.4 1.4E-05 48.8 2.5 25 37-61 35-59 (354)
446 2dpy_A FLII, flagellum-specifi 84.5 0.36 1.2E-05 51.2 2.2 22 40-61 159-180 (438)
447 3r20_A Cytidylate kinase; stru 84.4 0.56 1.9E-05 45.2 3.3 22 39-60 10-31 (233)
448 4b4t_L 26S protease subunit RP 84.4 2.8 9.6E-05 44.2 8.9 22 40-61 217-238 (437)
449 2o5v_A DNA replication and rep 84.3 0.4 1.4E-05 49.4 2.4 23 39-61 27-49 (359)
450 3sr0_A Adenylate kinase; phosp 84.3 0.54 1.9E-05 44.4 3.1 22 40-61 2-23 (206)
451 3co5_A Putative two-component 84.2 0.84 2.9E-05 40.0 4.2 22 40-61 29-50 (143)
452 1uj2_A Uridine-cytidine kinase 84.1 0.53 1.8E-05 45.6 3.1 22 39-60 23-44 (252)
453 3exa_A TRNA delta(2)-isopenten 84.0 0.59 2E-05 47.1 3.3 23 39-61 4-26 (322)
454 2p65_A Hypothetical protein PF 84.0 0.93 3.2E-05 40.7 4.6 24 38-61 43-66 (187)
455 3pfi_A Holliday junction ATP-d 83.9 1 3.6E-05 45.4 5.3 25 37-61 54-78 (338)
456 1w1w_A Structural maintenance 83.9 0.41 1.4E-05 50.5 2.3 24 39-62 27-50 (430)
457 1e69_A Chromosome segregation 83.8 0.41 1.4E-05 48.4 2.2 24 38-61 24-47 (322)
458 2rcn_A Probable GTPase ENGC; Y 83.6 0.41 1.4E-05 49.2 2.1 78 173-252 127-206 (358)
459 1tue_A Replication protein E1; 83.6 0.79 2.7E-05 43.3 3.8 21 40-60 60-80 (212)
460 3auy_A DNA double-strand break 83.6 0.48 1.6E-05 49.0 2.6 21 39-59 26-46 (371)
461 1ltq_A Polynucleotide kinase; 83.6 0.55 1.9E-05 46.7 3.0 21 40-60 4-24 (301)
462 1njg_A DNA polymerase III subu 83.5 1.1 3.8E-05 41.9 5.0 22 40-61 47-68 (250)
463 3umf_A Adenylate kinase; rossm 83.3 0.62 2.1E-05 44.4 3.1 23 39-61 30-52 (217)
464 2f6r_A COA synthase, bifunctio 83.3 0.5 1.7E-05 46.8 2.5 20 40-59 77-96 (281)
465 4aby_A DNA repair protein RECN 83.3 0.17 5.9E-06 53.0 -0.9 23 39-61 61-83 (415)
466 2ce7_A Cell division protein F 83.3 0.65 2.2E-05 49.7 3.5 22 40-61 51-72 (476)
467 3bos_A Putative DNA replicatio 82.7 0.69 2.4E-05 43.7 3.2 24 38-61 52-75 (242)
468 1nlf_A Regulatory protein REPA 82.6 0.47 1.6E-05 46.8 2.0 21 40-60 32-52 (279)
469 2chg_A Replication factor C sm 82.6 0.73 2.5E-05 42.6 3.3 24 38-61 38-61 (226)
470 3a8t_A Adenylate isopentenyltr 82.5 0.93 3.2E-05 46.1 4.2 23 39-61 41-63 (339)
471 1sxj_C Activator 1 40 kDa subu 81.9 0.62 2.1E-05 47.3 2.6 25 37-61 45-69 (340)
472 3foz_A TRNA delta(2)-isopenten 81.5 0.7 2.4E-05 46.5 2.8 22 39-60 11-32 (316)
473 2w58_A DNAI, primosome compone 81.4 0.86 2.9E-05 42.2 3.3 23 39-61 55-77 (202)
474 1a5t_A Delta prime, HOLB; zinc 81.2 10 0.00035 38.1 11.6 25 37-61 22-47 (334)
475 2ius_A DNA translocase FTSK; n 81.2 0.74 2.5E-05 49.7 3.0 24 37-60 166-189 (512)
476 3g5u_A MCG1178, multidrug resi 80.9 0.78 2.7E-05 55.4 3.4 22 40-61 1061-1082(1284)
477 1a7j_A Phosphoribulokinase; tr 80.7 0.55 1.9E-05 46.8 1.7 23 38-60 5-27 (290)
478 3cr8_A Sulfate adenylyltranfer 80.7 0.41 1.4E-05 52.3 0.8 22 40-61 371-392 (552)
479 4b4t_I 26S protease regulatory 80.6 4.6 0.00016 42.4 8.7 22 40-61 218-239 (437)
480 2qz4_A Paraplegin; AAA+, SPG7, 80.4 2.2 7.5E-05 41.0 6.0 23 39-61 40-62 (262)
481 1p5z_B DCK, deoxycytidine kina 80.1 0.75 2.6E-05 44.8 2.4 25 37-61 23-47 (263)
482 2qmh_A HPR kinase/phosphorylas 80.0 0.94 3.2E-05 42.5 2.9 25 37-61 33-57 (205)
483 4b4t_M 26S protease regulatory 79.9 4.4 0.00015 42.7 8.4 22 40-61 217-238 (434)
484 3cf2_A TER ATPase, transitiona 79.8 3.9 0.00013 46.6 8.4 26 36-61 235-261 (806)
485 3zvl_A Bifunctional polynucleo 79.7 0.89 3E-05 47.8 3.0 22 39-60 259-280 (416)
486 4b4t_J 26S protease regulatory 79.7 4.6 0.00016 42.0 8.4 22 40-61 184-205 (405)
487 3d3q_A TRNA delta(2)-isopenten 79.4 0.88 3E-05 46.4 2.7 22 40-61 9-30 (340)
488 4b4t_K 26S protease regulatory 79.2 2.2 7.5E-05 44.9 5.8 25 37-61 204-229 (428)
489 3k9g_A PF-32 protein; ssgcid, 79.2 11 0.00037 36.3 10.6 89 139-248 144-233 (267)
490 1bif_A 6-phosphofructo-2-kinas 78.6 1 3.6E-05 48.0 3.2 22 40-61 41-62 (469)
491 3t15_A Ribulose bisphosphate c 78.6 1 3.6E-05 44.7 3.0 24 37-60 34-58 (293)
492 1hqc_A RUVB; extended AAA-ATPa 78.5 1.3 4.6E-05 44.1 3.8 22 39-60 39-60 (324)
493 2iw3_A Elongation factor 3A; a 78.4 0.85 2.9E-05 53.0 2.5 23 40-62 463-485 (986)
494 3ux8_A Excinuclease ABC, A sub 78.4 0.85 2.9E-05 51.1 2.5 20 40-59 350-369 (670)
495 2qby_A CDC6 homolog 1, cell di 78.2 1.3 4.6E-05 45.0 3.8 24 38-61 45-68 (386)
496 1d2n_A N-ethylmaleimide-sensit 78.1 2.2 7.4E-05 41.6 5.1 24 38-61 64-87 (272)
497 2ocp_A DGK, deoxyguanosine kin 77.9 1 3.5E-05 43.2 2.6 22 40-61 4-25 (241)
498 2h92_A Cytidylate kinase; ross 77.8 1.2 4E-05 41.8 3.0 21 40-60 5-25 (219)
499 3crm_A TRNA delta(2)-isopenten 77.5 1.1 3.8E-05 45.4 2.8 22 40-61 7-28 (323)
500 2dr3_A UPF0273 protein PH0284; 77.4 1.1 3.7E-05 42.7 2.6 21 40-60 25-45 (247)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=2.6e-91 Score=786.55 Aligned_cols=575 Identities=38% Similarity=0.625 Sum_probs=502.6
Q ss_pred cchhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEe
Q 007538 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (599)
Q Consensus 3 ~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~ 82 (599)
+|++|++++|+||+.+..+|.... .++|+|+|||.+|+|||||+|+|+|.++||++.++|||||+++++.+
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~~---------i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~ 95 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 95 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCGG---------GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCcccc---------CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeec
Confidence 599999999999999999986432 58999999999999999999999999999999999999999999987
Q ss_pred cCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccH
Q 007538 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (599)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~ 162 (599)
.+ .+|+.+.+..+..+.+++++..+|+++++...|.+++|+.+++.+++++|+.++++||||||++..+..+||+++
T Consensus 96 ~~---~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di 172 (772)
T 3zvr_A 96 ST---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 172 (772)
T ss_dssp CS---SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHH
T ss_pred CC---cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHH
Confidence 64 478899999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeE
Q 007538 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (599)
Q Consensus 163 ~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~ 242 (599)
...+.+++..|+.....+||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++.+....+++.+...++++||.
T Consensus 173 ~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~ 252 (772)
T 3zvr_A 173 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 252 (772)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCC
Confidence 89999999999987777788888999888888888899999999999999999999998877666776666677788999
Q ss_pred EEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007538 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (599)
Q Consensus 243 ~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~ 322 (599)
.|.++|+.+......+.++...|..||.++|+|..+.++.|+..|++.|.+.|..||+++||.++.+|+.++..++.+++
T Consensus 253 ~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele 332 (772)
T 3zvr_A 253 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVD 332 (772)
T ss_dssp ECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHH
Confidence 99999998766666778888888999999999988889999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhhhHHHHHHHHHHHHHHHHHhhcCCC--------CCCcchHhHhhhhHHHHhccCCccccCChhhHHHHH
Q 007538 323 HLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVV 394 (599)
Q Consensus 323 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~--------~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i 394 (599)
++|++++.++.++..+|++++++|++.|.++++|.+ .||+||+++|++.|+..+.++++++.+++++|+++|
T Consensus 333 ~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i 412 (772)
T 3zvr_A 333 EYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAI 412 (772)
T ss_dssp HHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHH
Confidence 999988877766777899999999999999999998 589999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCChHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccccccCChhhHHHHHHHHHHHHHHHHHH
Q 007538 395 SEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRD 474 (599)
Q Consensus 395 ~~~~g~~p~~f~pe~~f~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~ 474 (599)
+|++|++|++|+|+.+|+.||++||++|++||++||+.|+++|.+++++|. .+|.|||+|++++.+++.+.|++++.
T Consensus 413 ~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~ 489 (772)
T 3zvr_A 413 KNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREG 489 (772)
T ss_dssp HHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984 48999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccHH---hhhcc--h----HHHh--hhCCC----------------CC----------------
Q 007538 475 EGRKTVIRLVDMEASYLTVE---FFRKL--P----QEVE--KAGNP----------------GN---------------- 511 (599)
Q Consensus 475 ~a~~~i~~li~~E~~yi~td---~~~~~--~----~~~~--~~~~~----------------~~---------------- 511 (599)
+|+++|.+||+||++||||+ |.+.. . +... ..++. ..
T Consensus 490 ~t~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (772)
T 3zvr_A 490 RTKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAEN 569 (772)
T ss_dssp HHHHHHHHHHHHHHTCCCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSE
T ss_pred HHHHHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeeccccc
Confidence 99999999999999999994 43211 0 0000 00000 00
Q ss_pred ----------------------------CC--------------CC-----------------------------CCCcc
Q 007538 512 ----------------------------SG--------------NT-----------------------------ASQAV 520 (599)
Q Consensus 512 ----------------------------~~--------------~~-----------------------------~~~~~ 520 (599)
.. .. ..|..
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 649 (772)
T 3zvr_A 570 LSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPER 649 (772)
T ss_dssp EEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC-
T ss_pred cccccchhhhcccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCcc
Confidence 00 00 00000
Q ss_pred -------cC------------CCch---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhChh
Q 007538 521 -------DR------------YSDG---HFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKE 578 (599)
Q Consensus 521 -------~~------------~~~~---~~~~i~~~l~aYf~Iv~k~i~D~VPkaI~~~lV~~~~~~lq~~L~~~L~~~~ 578 (599)
.+ ++++ .++.|+.+|+|||.||+|+++|+|||+|||||||.+++.++.+|+++||+.+
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~ 729 (772)
T 3zvr_A 650 VGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCG 729 (772)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTC
T ss_pred ccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 01 1222 3778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHHhhhh
Q 007538 579 VLSRSLSYLYAIGM 592 (599)
Q Consensus 579 ~~~~ll~e~~~~~~ 592 (599)
++++||+|+..++-
T Consensus 730 ~~~~lm~Es~~~~~ 743 (772)
T 3zvr_A 730 DQNTLMEESAEQAQ 743 (772)
T ss_dssp CTTTTTCCCHHHHH
T ss_pred CHHHHHhcCHHHHH
Confidence 99999999988763
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=1.1e-80 Score=697.89 Aligned_cols=529 Identities=27% Similarity=0.396 Sum_probs=451.3
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecC-CCCcccChHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHL-PKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~i~~~ 114 (599)
.++|+|+|||++|||||||+++|+|. ..|+++|.||++|..+.+.+..........+... ....+.++..+.+.+...
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 48999999999999999999999998 5699999999999999877654332222222111 134567888888888888
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
.....+.+.+++.+.+.+.+.++..++++|+|+||+...+..+++.+....+.+++..|+.++.++++++++++.|++++
T Consensus 122 ~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~ 201 (608)
T 3szr_A 122 QNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT 201 (608)
T ss_dssp HHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC
T ss_pred HHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH
Confidence 77777888899999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHHHhHhcCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATS 272 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~ 272 (599)
.++++++++++.|.|||+|+||+|+++.++. +.+++.++..++++||++|+|++++++....+..++...|..||.++
T Consensus 202 ~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~~~~~~~~~~~~~E~~fF~~~ 281 (608)
T 3szr_A 202 EALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENH 281 (608)
T ss_dssp HHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCTTTCCCHHHHTTTHHHHTTTC
T ss_pred HHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhcccCCCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999988763 56788899999999999999999999999999999999999999999
Q ss_pred CCCCchhh--ccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHH
Q 007538 273 PDYGHLAG--KMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIF 350 (599)
Q Consensus 273 ~~~~~~~~--~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~ 350 (599)
+||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+..+++||++||+++++++.++..+|++++++|++.+
T Consensus 282 ~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~ 361 (608)
T 3szr_A 282 PYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDI 361 (608)
T ss_dssp TTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998754 8999999999999999999999999999999999999999999999998888788888999999999999
Q ss_pred HHhhcCCCCCC---cchHhHhhhhHHHHhccCCc----cccCChhhHHHHHHhhcCCCCCCCCChHHHHHHHHHHHhccc
Q 007538 351 KEHLDGGRPGG---DRIYGVFDNQLPAALRKLPF----DRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFR 423 (599)
Q Consensus 351 ~~~~~g~~~~~---~~i~~~f~~~~~~~~~~~~~----~~~~~~~~i~~~i~~~~g~~p~~f~pe~~f~~li~~~i~~l~ 423 (599)
.++++|.+..+ .+++..+++.|..|...+.. ......++|+++++++.|.+++.|+|+.+|+.||++|+++|+
T Consensus 362 ~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~ 441 (608)
T 3szr_A 362 TALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALE 441 (608)
T ss_dssp HHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGH
T ss_pred HHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999997543 57777777777766544321 112346789999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHh-hhcchHH
Q 007538 424 GPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLVDMEASYLTVEF-FRKLPQE 502 (599)
Q Consensus 424 ~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~yi~td~-~~~~~~~ 502 (599)
+||.+|++.|++.+.+++.++.. .+|.|||+|++++.+++.++++++.++|+++|+++|+||+.|||+|. |..
T Consensus 442 ~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~~d~~~~~---- 515 (608)
T 3szr_A 442 EPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSSA---- 515 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccC----
Confidence 99999999999999999988665 58999999999999999999999999999999999999999999863 420
Q ss_pred HhhhCCCCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHH
Q 007538 503 VEKAGNPGNSGNTASQAVDRYSDGHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQVREAKLSLLNHFYTQIGRKEVLSR 582 (599)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aYf~Iv~k~i~D~VPkaI~~~lV~~~~~~lq~~L~~~L~~~~~~~~ 582 (599)
+ ...+.+|+.+|+|||+||+||++|+|||+||||||+.+++.||.+|++.||+++.+++
T Consensus 516 -----~----------------~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ 574 (608)
T 3szr_A 516 -----T----------------DSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSW 574 (608)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred -----C----------------CccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 0 0123579999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHhhhh
Q 007538 583 SLSYLYAIGM 592 (599)
Q Consensus 583 ll~e~~~~~~ 592 (599)
||+|..+++.
T Consensus 575 ll~E~~~~~~ 584 (608)
T 3szr_A 575 LLKERSDTSD 584 (608)
T ss_dssp HTCCCHHHHH
T ss_pred HhCCCHHHHH
Confidence 9999999874
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=6.2e-52 Score=438.24 Aligned_cols=331 Identities=73% Similarity=1.175 Sum_probs=296.0
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEec
Q 007538 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (599)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (599)
|++|++++|+||++++.+|+.+. +..++.+...+|+|+|||++|||||||+|+|+|.+|+|++.++|||+|+++++.+.
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~-~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~ 79 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGD-SSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKI 79 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCS-SCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHHhhCcccc-ccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecC
Confidence 79999999999999999997653 44577778899999999999999999999999999999999999999999999998
Q ss_pred CCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHH
Q 007538 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (599)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~ 163 (599)
+..+.+++.+.+.++..+.+|+.+..++..++....|.+.+|+.+++.+++.+|...+++||||||+.+....+|+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 80 DDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIV 159 (360)
T ss_dssp SSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHH
T ss_pred CCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEE
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~ 243 (599)
..+..++..|++++++|||++++++.+..+++++.+++.+++.+.|+|+|+||+|++++++...+++.+....+++||++
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVG 239 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEE
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEE
Confidence 99999999999999999999999998888899999999999999999999999999988877788888888889999999
Q ss_pred EEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 007538 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDH 323 (599)
Q Consensus 244 v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~ 323 (599)
|++++++++++.++...+...|..||.++++|+.+..++|+..|+.+|+++|.+||+++||.++.+|+..+.+++++|++
T Consensus 240 v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~ 319 (360)
T 3t34_A 240 VVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSR 319 (360)
T ss_dssp ECCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC---
T ss_pred EEECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhh
Q 007538 324 LGRPIAVDAGAQ 335 (599)
Q Consensus 324 lg~~~~~~~~~~ 335 (599)
||+++++++.++
T Consensus 320 lg~~~~~~~~~~ 331 (360)
T 3t34_A 320 LGKPIAHGTDSR 331 (360)
T ss_dssp ------------
T ss_pred cCCCCCCCHHHH
Confidence 999998776543
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=7.5e-47 Score=398.15 Aligned_cols=339 Identities=51% Similarity=0.811 Sum_probs=308.1
Q ss_pred cchhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEe
Q 007538 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (599)
Q Consensus 3 ~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~ 82 (599)
+|++|++++|+|||.+..+|.... ..+|+|+|||++|||||||+|+|+|.+++|++.++||++|+++++.+
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~---------~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~ 75 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGG---------CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCC---------CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEc
Confidence 589999999999999998875422 48999999999999999999999999999999999999999999887
Q ss_pred cCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccH
Q 007538 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (599)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~ 162 (599)
.+ .+|+++.+.++..+++++.+..+++.++..+.|.+.+++...+.+++++|+..+++||||||+.+.+..+|++++
T Consensus 76 ~~---~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~ 152 (353)
T 2x2e_A 76 AT---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 152 (353)
T ss_dssp CS---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTH
T ss_pred CC---ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhH
Confidence 63 578999999999999999999999999999988889999999999999999999999999999998888899998
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeE
Q 007538 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (599)
Q Consensus 163 ~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~ 242 (599)
.+.+.+++..|+.+++++||+|++++.++.++++..+++.+++.+.|+++|+||+|+++.+.++.+++.+...++++||+
T Consensus 153 ~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 232 (353)
T 2x2e_A 153 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232 (353)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCce
Confidence 89999999999999999999999999999888888899999999999999999999998776666777777778888999
Q ss_pred EEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007538 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (599)
Q Consensus 243 ~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~ 322 (599)
.+.++|+.+.....+..++...|..||..++.|+....++|+..|++.|.+.|..|+++++|.+.++|+.++..++.+++
T Consensus 233 ~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~ 312 (353)
T 2x2e_A 233 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 312 (353)
T ss_dssp ECCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877777778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhhhH--HHHHHHHHHHHHHHHHh
Q 007538 323 HLGRPIAVDAGAQL--YTILELCRAFDRIFKEH 353 (599)
Q Consensus 323 ~lg~~~~~~~~~~~--~~l~~~~~~f~~~~~~~ 353 (599)
++|++++.++.++. .++++++++|++.|...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 313 EYKNFRPDKHGTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp HHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HccCCCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99988777665443 78999999999998754
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=1e-39 Score=338.07 Aligned_cols=310 Identities=51% Similarity=0.812 Sum_probs=245.8
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecC
Q 007538 5 ESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTE 84 (599)
Q Consensus 5 ~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~ 84 (599)
|+|++++|+||+++..+|... ..+|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~----------~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~ 70 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSDP----------LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLP 70 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSCT----------TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECC
T ss_pred CchHHHHHHHHHHHHHcCCCC----------CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCC
Confidence 579999999999998877542 3899999999999999999999999999999999999999999988763
Q ss_pred C-----CCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCC
Q 007538 85 D-----GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP 159 (599)
Q Consensus 85 ~-----~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~ 159 (599)
. ....|+++.+.++..+.+++++.+++..+++.+.|.+.+++.+.+.+++.+|...+++||||||+.+.+..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~ 150 (315)
T 1jwy_B 71 IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQP 150 (315)
T ss_dssp CCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC--------
T ss_pred CcccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCc
Confidence 2 34678899999999999999999999999999988888999999999999999999999999999876666677
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC
Q 007538 160 DTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239 (599)
Q Consensus 160 ~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~ 239 (599)
....+.+..++..|++.+|++|+++++++.++...+...+++.+++.+.|+++|+||+|+.+.+....+.+.+....++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~ 230 (315)
T 1jwy_B 151 TDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTL 230 (315)
T ss_dssp -CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTT
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCC
Confidence 77888899999999999999999998877777656666788889988999999999999997765556666655566678
Q ss_pred CeEEEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007538 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (599)
Q Consensus 240 g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~ 319 (599)
+|+.+++.|+.+++.+....+....+..||..+++|..+..+.|+..|...+.+.+..++++++|.+..+++..+.++++
T Consensus 231 ~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~ 310 (315)
T 1jwy_B 231 GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQG 310 (315)
T ss_dssp CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999988788888888888889998888887778899999999999999999999999999999999999999
Q ss_pred HHHhc
Q 007538 320 EMDHL 324 (599)
Q Consensus 320 eL~~l 324 (599)
+|++|
T Consensus 311 ~l~~~ 315 (315)
T 1jwy_B 311 ELSTY 315 (315)
T ss_dssp -----
T ss_pred HHHhC
Confidence 99875
No 6
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.3e-40 Score=325.81 Aligned_cols=257 Identities=12% Similarity=0.142 Sum_probs=190.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcCCCC---CCcchHhHhhhhHHHHhccCCccccC----ChhhHHHHHHhhcCCCCCC
Q 007538 332 AGAQLYTILELCRAFDRIFKEHLDGGRP---GGDRIYGVFDNQLPAALRKLPFDRHL----SLQNVKKVVSEADGYQPHL 404 (599)
Q Consensus 332 ~~~~~~~l~~~~~~f~~~~~~~~~g~~~---~~~~i~~~f~~~~~~~~~~~~~~~~~----~~~~i~~~i~~~~g~~p~~ 404 (599)
+.++..||.+.++.|++.+.+++.|... ++.|++..++..|.+|...++-.... -.++|....++++|.+++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 4567889999999999999999999864 56799999999999887654321111 1256667778999999999
Q ss_pred CCChHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007538 405 IAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQELKRFPTLQAEIAAAANEALERFRDEGRKTVIRLV 484 (599)
Q Consensus 405 f~pe~~f~~li~~~i~~l~~Ps~~cv~~V~~~l~~~v~~~~~~~~~f~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~li 484 (599)
|+|+.+|+.||++||++|++||++|++.|++++.+++.++.. .+|.|||+|++.+.+++.++++++..+|++||+++|
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~ 160 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 160 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765 599999999999999999999999999999999999
Q ss_pred HHHhccccHH-hhhcchHHHh-hhCCCC--CCCCCCCCcccCCCc-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007538 485 DMEASYLTVE-FFRKLPQEVE-KAGNPG--NSGNTASQAVDRYSD-GHFRRIGSNVSSYVGMVSETLRTTIPKAIVYCQV 559 (599)
Q Consensus 485 ~~E~~yi~td-~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~-~~~~~i~~~l~aYf~Iv~k~i~D~VPkaI~~~lV 559 (599)
+||+.+||+| .|....+.++ +..++. ......+........ +.+++|+.||.|||+||++|++|+|||+|+||||
T Consensus 161 ~mE~~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll 240 (271)
T 3ljb_A 161 QMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFML 240 (271)
T ss_dssp HHHTSCC----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccCCHHHHHHHHHHHHHHhcccccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999888885 4554322222 111110 000000001111223 4678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHhHHhh
Q 007538 560 REAKLSLLNHFYTQIGRKEVLSRSLSYLYAI 590 (599)
Q Consensus 560 ~~~~~~lq~~L~~~L~~~~~~~~ll~e~~~~ 590 (599)
+.++++||.+|++.||+++.+++||+|..++
T Consensus 241 ~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 241 QTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp HHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHhchhhHHHHhcCCCCC
Confidence 9999999999999999999999999998653
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=5.5e-37 Score=314.92 Aligned_cols=298 Identities=56% Similarity=0.901 Sum_probs=259.0
Q ss_pred chhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEec
Q 007538 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (599)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (599)
|++|+++++++++.|..++.... ..+|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~---------~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~ 71 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNS 71 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTT---------CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCC---------CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecC
Confidence 79999999999999988875422 478999999999999999999999999999999999999999998776
Q ss_pred CCCCccceeeecCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHH
Q 007538 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (599)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~ 163 (599)
. .+|+++.+..+..+++++.+...++..+..+.|.+.+++...+.+++++|...+++||||||+......++++++.
T Consensus 72 ~---~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~ 148 (299)
T 2aka_B 72 T---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE 148 (299)
T ss_dssp S---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHH
T ss_pred C---cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHH
Confidence 4 4678888888888999999999998888888888889999999999999988999999999998877666777788
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEE
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~ 243 (599)
..+..++..|++.++++||+|++++.++..++...+++.+++.+.|+++|+||+|+.+.+....+.+.+....++.||+.
T Consensus 149 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 228 (299)
T 2aka_B 149 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 228 (299)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEE
Confidence 88999999999999999888888888887777778899999999999999999999977655566666655566678888
Q ss_pred EEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007538 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKS 313 (599)
Q Consensus 244 v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~ 313 (599)
+.+.|+...............|.+||.....|.....++|+..|.+.|.+.+..++++++|.+.++|+.+
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 8777776554445666777779999988888998888999999999999999999999999999999865
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.82 E-value=3.1e-19 Score=202.75 Aligned_cols=174 Identities=18% Similarity=0.269 Sum_probs=110.9
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHH---H
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEI---Q 112 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i---~ 112 (599)
...++|+|+|.+|+|||||+|+|+|.+++|++..+||++|+.+.+...... ...+.........++..+...+ .
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~---t~~~~~g~~~~~~~~~~i~~~~~i~~ 143 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKV---TIHFNDGKSPQQLDFQNFKYKYTIDP 143 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEE---EEEESSSCCCCEEEHHHHHHHSCCCH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeE---EEEEcCCCcccccChhhhhhhhcCCH
Confidence 356799999999999999999999999999999999999999986432110 1111111111112222222111 0
Q ss_pred HHHhhhcCCCCCcCCccEEEEEecCCC---CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 007538 113 DETDRVTGKTKQISPIPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ 189 (599)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~ 189 (599)
+......+.+.........++++.|.. .+++||||||+.... .....+..|++++|++|+|++ ++.
T Consensus 144 ~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----------~~~~~~~~~i~~aD~vL~Vvd-a~~ 212 (695)
T 2j69_A 144 AEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----------ARNELSLGYVNNCHAILFVMR-ASQ 212 (695)
T ss_dssp HHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----------TCHHHHTHHHHSSSEEEEEEE-TTS
T ss_pred HHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----------hHHHHHHHHHHhCCEEEEEEe-CCC
Confidence 111112222333444556667777753 579999999986521 135678899999998876654 555
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 190 DIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 190 d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
.....+...+.+.+...+.++++|+||+|+.+..
T Consensus 213 ~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 213 PCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp TTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred ccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 5533333333445666688999999999997543
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.66 E-value=1.9e-16 Score=162.94 Aligned_cols=168 Identities=17% Similarity=0.271 Sum_probs=107.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
....|+++|.+|||||||+|+|+|..+...+.. .+|+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~---------------------------------------- 48 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMR---------------------------------------- 48 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC----------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeE----------------------------------------
Confidence 455899999999999999999999986322211 122221
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
+..........+++||||||+.+... .....+.+...+..|++.+|+++++++..+ .. ...
T Consensus 49 --------------~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~-~~-~~~ 109 (308)
T 3iev_A 49 --------------VLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATE-GW-RPR 109 (308)
T ss_dssp --------------EEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTT-BS-CHH
T ss_pred --------------EEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCC-CC-Cch
Confidence 11111122256789999999976431 134667788889999999999887776543 33 222
Q ss_pred HHHH-HHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCccccc--CCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 196 AMKL-AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRL--QHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 196 ~l~l-a~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l--~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.... ...+...+.++++|+||+|+.+........+......+ ...++.+++.++.++++++..+....
T Consensus 110 ~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 110 DEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp HHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 2333 55555567899999999999843333322222111122 25689999999888877666555443
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.66 E-value=1.7e-16 Score=162.66 Aligned_cols=160 Identities=20% Similarity=0.238 Sum_probs=100.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.+.|+|||.+|+|||||+|+|+|..+...+.. .+|+..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~----------------------------------------- 45 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR----------------------------------------- 45 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEE-----------------------------------------
Confidence 45799999999999999999999987322211 122211
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
+. .+.......++||||||+.+.. ..+.+.+...+..|++.+|+++++++..+ .+.. ..
T Consensus 46 -------------i~-~i~~~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~il~VvD~~~-~~~~-~~ 104 (301)
T 1wf3_A 46 -------------LR-GILTEGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNAVVWVVDLRH-PPTP-ED 104 (301)
T ss_dssp -------------EE-EEEEETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSEEEEEEETTS-CCCH-HH
T ss_pred -------------EE-EEEEeCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCEEEEEEECCC-CCCh-HH
Confidence 11 1122234678999999997532 23556678889999999999888776543 3322 22
Q ss_pred HHHHHHhCCC--CCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 197 MKLAREVDPT--GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 l~la~~~d~~--g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
..+.+.+... +.|+++|+||+|+.+......+.+... .....++++++.++.++++++..+..
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 2333334333 689999999999985432122222211 11124678888888888766655544
No 11
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.57 E-value=1.8e-15 Score=151.50 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=100.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.|+|+++|.+|||||||+|+|+|..+.......+|.-.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~------------------------------------------ 38 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEK------------------------------------------ 38 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEE------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEE------------------------------------------
Confidence 37999999999999999999999864111111111111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCcccccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~v~~a~~d~~~~~ 195 (599)
..-.+.. +...+.||||||+.+....++.... .+.+...|+ .++|++|++++..+ ...
T Consensus 39 ------------~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~---~e~i~~~~~~~~~~d~vi~VvDas~----~~~ 98 (256)
T 3iby_A 39 ------------KTGEFLL-GEHLIEITDLPGVYSLVANAEGISQ---DEQIAAQSVIDLEYDCIINVIDACH----LER 98 (256)
T ss_dssp ------------EEEEEEE-TTEEEEEEECCCCSSCC------CH---HHHHHHHHHHHSCCSEEEEEEEGGG----HHH
T ss_pred ------------EEEEEEE-CCeEEEEEeCCCcccccccccCCCH---HHHHHHHHHhhCCCCEEEEEeeCCC----chh
Confidence 0001111 2347899999999775432111122 234667787 89999988776554 344
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.+.+..++...+.|+++|+||+|+...... ..+.+ ...++.+++.++++++.++++++..+.
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l---~~~lg~~vi~~SA~~g~gi~el~~~i~ 162 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKL---ESLLGCSVIPIQAHKNIGIPALQQSLL 162 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHH---HHHHCSCEEECBGGGTBSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHH---HHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 556777777789999999999999754321 11111 223567899999999888876655443
No 12
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=5.2e-15 Score=138.62 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=94.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+.+.....++......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~-------------------------------------- 50 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN-------------------------------------- 50 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEE--------------------------------------
Confidence 456899999999999999999999876332221111111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
..+.+ ......+.||||||. +....+...|++++|++|++++..+... ...
T Consensus 51 -------------~~~~~-~~~~~~~~~~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 51 -------------KVLDV-DGVKVKLQMWDTAGQ-------------ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103 (180)
T ss_dssp -------------EEEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEeCCCc-------------HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence 00011 111246889999996 3345667889999999988776554321 113
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.++..+....+.+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 4555556666677899999999999864432111111111223467888888888777765554443
No 13
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.55 E-value=6.8e-15 Score=139.90 Aligned_cols=163 Identities=13% Similarity=0.192 Sum_probs=103.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+.+......|... .
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~------------------------------------- 54 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF---K------------------------------------- 54 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE---E-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE---E-------------------------------------
Confidence 456999999999999999999999876322221111111 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
...+.+ ......+.||||||... ...+...|++.+|++|+|++..+... ...
T Consensus 55 ------------~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 55 ------------IRTIEL-DGKTIKLQIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDVTDQESFNNVK 108 (196)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGG-------------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHh-------------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHH
Confidence 000011 11124688999999632 24456778999999988876554321 123
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.++..+....+.+.++++|+||+|+.+................+..|+.+++.++.++++.+..+.....+
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45555666666688999999999998654322222222223445789999999998888777665554443
No 14
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.55 E-value=8.1e-15 Score=142.72 Aligned_cols=167 Identities=20% Similarity=0.245 Sum_probs=103.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCc-ccc-cccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLP-RGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP-~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
..|+|+|+|.+|+|||||+|+|+|..++. .+. ..+|+.+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 68 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--------------------------------------- 68 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE---------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce---------------------------------------
Confidence 67899999999999999999999986321 111 1112111
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcC---CCeEEEEEecCCccc
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK---PNSVILAISPANQDI 191 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~---~~~iIL~v~~a~~d~ 191 (599)
....+.......++||||||+..... +....+.+..++..|++. +|+++++++ +...+
T Consensus 69 ---------------~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d-~~~~~ 129 (223)
T 4dhe_A 69 ---------------NYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMD-ARRPL 129 (223)
T ss_dssp ---------------EEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCC
T ss_pred ---------------EEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEe-CCCCC
Confidence 11122223457899999999865432 233456778888888877 455666554 44433
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCccc-------ccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSY-------RLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 192 ~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~-------~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
......+.+.+...+.++++|+||+|+.+.... ..+.+..... .....++.+++.++.++++++..+...
T Consensus 130 -~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 130 -TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp -CHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 333444555555567899999999999864321 1111111111 133467888888888877666555443
No 15
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.54 E-value=1.2e-14 Score=133.84 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=95.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++|+|||||+|++++..+.+... ..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~------------------------------------------ 40 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD-PTIEDFY------------------------------------------ 40 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC-CCcceeE------------------------------------------
Confidence 379999999999999999999876532111 1111000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
...+.+ ......+.||||||... ...+...|++.+++++++++..+... ....+
T Consensus 41 ----------~~~~~~-~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 96 (167)
T 1kao_A 41 ----------RKEIEV-DSSPSVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM 96 (167)
T ss_dssp ----------EEEEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHH
Confidence 000011 11123488999999632 24567778899999988776554321 01122
Q ss_pred H-HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 197 M-KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 197 l-~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
+ .+.+.....+.|+++|+||+|+.+................+.+|+.+++.++.++++.+..+...
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 97 RDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHH
Confidence 2 23334445678999999999997543321111111122345689999999999888766655443
No 16
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.54 E-value=5.4e-15 Score=136.99 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=91.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+.+......+.-. .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~------------------------------------- 44 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF---L------------------------------------- 44 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEE---E-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEE---E-------------------------------------
Confidence 345899999999999999999998875222111111000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
...+.+ ......+.||||||.. ....+...|+++++++|++++..+.+. ...
T Consensus 45 ------------~~~~~~-~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 98 (170)
T 1z08_A 45 ------------TKKLNI-GGKRVNLAIWDTAGQE-------------RFHALGPIYYRDSNGAILVYDITDEDSFQKVK 98 (170)
T ss_dssp ------------EEEEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcH-------------hhhhhHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 000011 1112368899999962 334556778999999988776554321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.++..++...+.+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 99 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 99 NWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp HHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 3333444444456899999999999764321111111112234467888999888887766554443
No 17
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.54 E-value=7.9e-15 Score=135.44 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=81.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||+|+|+|..+.+....+.+.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD------------------------------------------ 39 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE------------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE------------------------------------------
Confidence 45899999999999999999998765222211111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
..+.+ ......+.+|||||.. ....+...|++.+++++++++..+... ....
T Consensus 40 ------------~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 93 (166)
T 3q72_A 40 ------------RSIVV-DGEEASLMVYDIWEQD-------------GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE 93 (166)
T ss_dssp ------------EEEEE-TTEEEEEEEEECC----------------------------CCEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCc-------------cchhhhhhhhhhCCEEEEEEECCCHHHHHHHHH
Confidence 00011 1123467899999973 335567788999999988876554321 0112
Q ss_pred HHHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 196 AMKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 196 ~l~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
++..... ....+.|+++|+||+|+.+......+.........+.+|+.+++.++.++++.+..+....
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 94 LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 2222222 2235789999999999986543222222222223456788888888888777665554443
No 18
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.53 E-value=8.6e-15 Score=137.97 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=99.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|++|||||||+|+|++..+.+......+... ..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~------------------------------------ 49 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF---GS------------------------------------ 49 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE---EE------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE---EE------------------------------------
Confidence 457999999999999999999998876322211111000 00
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
..+.+ ......+.||||||.. ....+...|++++|++|++++..+... ...
T Consensus 50 -------------~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 102 (186)
T 2bme_A 50 -------------KIINV-GGKYVKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITSRETYNALT 102 (186)
T ss_dssp -------------EEEEE-TTEEEEEEEEEECCSG-------------GGHHHHHTTSTTCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEeCCCcH-------------HHHHHHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 00011 1112468899999962 345678889999999988876554321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.++..++.....+.++++|+||+|+.+................+..|+.+++.++.++++.+..+....
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 344445555566789999999999975332111111111123345788888888888877666555443
No 19
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.53 E-value=2.4e-14 Score=140.34 Aligned_cols=171 Identities=12% Similarity=0.161 Sum_probs=93.9
Q ss_pred cccccccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHH
Q 007538 30 AFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRK 109 (599)
Q Consensus 30 ~~~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 109 (599)
.+|......++|+|+|.+|+|||||+|+|+|..+.+.....+|+..
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~---------------------------------- 66 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL---------------------------------- 66 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE----------------------------------
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee----------------------------------
Confidence 3555555778999999999999999999999876222211112111
Q ss_pred HHHHHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 007538 110 EIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ 189 (599)
Q Consensus 110 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~ 189 (599)
.+.........+.||||||+...+.. ... ......+..|...++++|+|++..+.
T Consensus 67 ---------------------~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~--~~~~~~~~~~~~~~d~~i~v~d~~~~ 121 (228)
T 2qu8_A 67 ---------------------YVGHFDHKLNKYQIIDTPGLLDRAFE--NRN--TIEMTTITALAHINGVILFIIDISEQ 121 (228)
T ss_dssp ---------------------EEEEEEETTEEEEEEECTTTTTSCGG--GCC--HHHHHHHHHHHTSSEEEEEEEETTCT
T ss_pred ---------------------eeeeeecCCCeEEEEECCCCcCcccc--hhh--hHHHHHHHHhhccccEEEEEEecccc
Confidence 11111112356899999999653221 000 11112234567788888777765443
Q ss_pred c-cccHHHHHHHHHhCCC--CCceEEEeccCCCCCCCCcHH---HHHhCcccccC--CCeEEEEcCChhhhccCCCHH
Q 007538 190 D-IATSDAMKLAREVDPT--GERTFGVLTKLDLMDKGTNAL---DVLEGRSYRLQ--HPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 190 d-~~~~~~l~la~~~d~~--g~rti~VltK~Dl~~~~~~~~---~~~~~~~~~l~--~g~~~v~~~s~~~i~~~~~~~ 259 (599)
. +....+..+...+... +.++++|+||+|+.+...... ..+.......+ ..|+.+++.++.++++.+..+
T Consensus 122 ~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 199 (228)
T 2qu8_A 122 CGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199 (228)
T ss_dssp TSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHH
Confidence 2 2223444555555443 789999999999986543211 11111111112 356667776666655544433
No 20
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.53 E-value=2e-15 Score=154.70 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=94.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccc-cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..+.|++||++|||||||+|+|+|..+.+.+..+ +|+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~---------------------------------------- 46 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR---------------------------------------- 46 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC----------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceee----------------------------------------
Confidence 3458999999999999999999998752221111 12111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCC-ccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~-~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
+. .+...+...++||||||+. ... ....+.+...+..+++.+|+++++++..+ +..
T Consensus 47 --------------~~-gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~- 103 (301)
T 1ega_A 47 --------------IV-GIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVELVIFVVEGTR--WTP- 103 (301)
T ss_dssp --------------EE-EEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEEEEEEEETTC--CCH-
T ss_pred --------------EE-EEEEECCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCCEEEEEEeCCC--CCH-
Confidence 00 1122234578999999995 211 01122333345677888998877665433 433
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 260 (599)
....+++.+...+.|.++|+||+|+........+.+......++. .++++++.++.+++++++.+.
T Consensus 104 ~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 104 DDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 333456666556789999999999986222222322211112222 366777777776665554443
No 21
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.53 E-value=1.4e-14 Score=157.36 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=97.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCC-cccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~l-P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-++|++||.+|+|||||+|+|+|.++. ......+|+-+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~----------------------------------------- 281 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV----------------------------------------- 281 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCS-----------------------------------------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeee-----------------------------------------
Confidence 368999999999999999999998651 11222222222
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCC-ccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~-~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
....+ .+ +...++||||||+. ...... + ..--..+..|++.+|++|+|++..+.. ..+
T Consensus 282 ---------~~~~i--~~---~g~~~~l~DTaG~~~~~~~~v--e---~~gi~~~~~~~~~aD~vl~VvD~s~~~--s~~ 340 (482)
T 1xzp_A 282 ---------ISEEI--VI---RGILFRIVDTAGVRSETNDLV--E---RLGIERTLQEIEKADIVLFVLDASSPL--DEE 340 (482)
T ss_dssp ---------CCEEE--EE---TTEEEEEEESSCCCSSCCTTC--C---CCCHHHHHHHHHHCSEEEEEEETTSCC--CHH
T ss_pred ---------EEEEE--ec---CCeEEEEEECCCccccchhhH--H---HHHHHHHHHHhhcccEEEEEecCCCCC--CHH
Confidence 11111 12 23568999999996 432110 0 001133557889999988877654432 222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
..++...+ .+.++++|+||+|+.+.. ...++.. . .....+++.+++.++.++++++..+...
T Consensus 341 ~~~il~~l--~~~piivV~NK~DL~~~~-~~~~~~~-~-~~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 341 DRKILERI--KNKRYLVVINKVDVVEKI-NEEEIKN-K-LGTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH-H-HTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCEEEEEECccccccc-CHHHHHH-H-hcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33444444 367999999999997542 2222111 0 1123578999999999988877766654
No 22
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.53 E-value=1.7e-14 Score=138.32 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=97.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+.+.... |. .+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~-~~~~~~------------------------------------ 47 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVS--TV-GIDFKV------------------------------------ 47 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCC--CC-SEEEEE------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--cc-ceeEEE------------------------------------
Confidence 456999999999999999999999876322111 10 000000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
..+.+ ......+.||||||.. ....+...|+++++++|+|++..+... ...
T Consensus 48 -------------~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 100 (203)
T 1zbd_A 48 -------------KTIYR-NDKRIKLQIWDTAGLE-------------RYRTITTAYYRGAMGFILMYDITNEESFNAVQ 100 (203)
T ss_dssp -------------EEEEE-TTEEEEEEEEEECCSG-------------GGHHHHHTTGGGCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCeEEEEEEEECCCch-------------hhcchHHHhhcCCCEEEEEEECcCHHHHHHHH
Confidence 00011 1113468999999973 235678889999999988776554321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
.++..+......+.++++|+||+|+.+......+........++..|+.+++.++.++++.+..+...
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444555555678999999999997643321111111112234567888888777776655554443
No 23
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=9.4e-15 Score=140.98 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=100.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|++|+|||||+|+|++..+.+.....++.-..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 58 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK---------------------------------------- 58 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE----------------------------------------
Confidence 5679999999999999999999988763222211111110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~ 194 (599)
...+.+ ......+.||||||... +..+...|++.+|++|+|++..+.. + ...
T Consensus 59 ------------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 59 ------------IKTVDI-NGKKVKLQLWDTAGQER-------------FRTITTAYYRGAMGIILVYDVTDERTFTNIK 112 (213)
T ss_dssp ------------EEEEEE-TTEEEEEEEECCTTGGG-------------GTCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 000111 11124689999999633 2334567889999998877655432 1 113
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.++..+....+.+.++++|+||+|+.+......+ ........+..|+.+++.++.++++.+..+.....+
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ-GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHH-HHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcccccCHHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4555555555667899999999999533222111 111112234678999999998888777766655444
No 24
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.52 E-value=6.3e-15 Score=136.38 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=94.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||+|+|++..+.+......+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK----------------------------------------- 41 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEE-----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE-----------------------------------------
Confidence 358999999999999999999998763222111111000
Q ss_pred hcCCCCCcCCccEEEEEecC-CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 118 VTGKTKQISPIPIHLSIYSP-NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~-~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
.. .+... ....+.||||||.... ..+...|++.+|++|++++..+... ...
T Consensus 42 -----------~~--~~~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 95 (170)
T 1g16_A 42 -----------IK--TVDINGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIK 95 (170)
T ss_dssp -----------EE--EEESSSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHH
T ss_pred -----------EE--EEEECCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 01111 1236889999996332 2345678899999888776554321 113
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.++..+......+.++++|+||+|+.+...... .........+..|+.+++.++.++++.+..+....
T Consensus 96 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 96 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD-QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHH-HHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCCcCccCHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555555556789999999999954332211 11111222346788888888887776665554433
No 25
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=138.65 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=94.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+.+......+. ...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~---~~~------------------------------------- 64 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV---DFK------------------------------------- 64 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTE---EEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce---eEE-------------------------------------
Confidence 4558999999999999999999998752211111110 000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~ 194 (599)
...+.+ ......+.||||||.. ....+...|++.+|++|+|++..+.. + ...
T Consensus 65 ------------~~~~~~-~~~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~ 118 (192)
T 2il1_A 65 ------------IKTVEL-RGKKIRLQIWDTAGQE-------------RFNSITSAYYRSAKGIILVYDITKKETFDDLP 118 (192)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSG-------------GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCeEEEEEEEeCCCcH-------------HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 001111 1112468999999962 23566788999999998877655432 1 113
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccc-cCCCeEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYR-LQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.++..++...+.+.++++|+||+|+.+......+........ .+..|+.+++.++.++++.+..+..
T Consensus 119 ~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 119 KWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 445566666677889999999999975432111111111111 2456788888888777766554443
No 26
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.52 E-value=5.5e-15 Score=160.36 Aligned_cols=160 Identities=16% Similarity=0.234 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+-.+|+|+|.+|+|||||+|+|+|.++ .+++..|
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~----------------------------------------- 265 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMP----------------------------------------- 265 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCC-----------------------------------------
Confidence 345799999999999999999999864 2233222
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHH-HHHHHHHhhcCCCeEEEEEecCCccccc--
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED-IESMVRSYVEKPNSVILAISPANQDIAT-- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~-i~~~~~~yi~~~~~iIL~v~~a~~d~~~-- 193 (599)
|.+..+.... +.+ +...++||||||+.+.. +..+. .-..+..|++.+|++++|++..+.....
T Consensus 266 ---gtT~d~~~~~--i~~---~g~~l~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~ 331 (476)
T 3gee_A 266 ---GTTRDYIEEC--FIH---DKTMFRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDEL 331 (476)
T ss_dssp ----------CEE--EEE---TTEEEEEEC--------------------------CCCSSCSEEEEEEETTTCSSGGGH
T ss_pred ---CceEEEEEEE--EEE---CCeEEEEEECCCCCcch------hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhh
Confidence 0000000111 111 23569999999995521 11111 1234667899999998877655432211
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.....+.+.+. +.++|+|+||+|+.+......+.+... . ...++.+++.++.++++++..+..
T Consensus 332 ~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~--~-~~~~i~vSAktg~GI~eL~~~i~~ 394 (476)
T 3gee_A 332 TEIRELKAAHP--AAKFLTVANKLDRAANADALIRAIADG--T-GTEVIGISALNGDGIDTLKQHMGD 394 (476)
T ss_dssp HHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHH--H-TSCEEECBTTTTBSHHHHHHHHTH
T ss_pred HHHHHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhc--C-CCceEEEEECCCCCHHHHHHHHHH
Confidence 14455666655 689999999999986543211111111 1 157889999999888776655544
No 27
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.52 E-value=1.1e-14 Score=145.87 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=98.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccc--cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
..++|+|+|.+|||||||+|+|+|...++.+... +|+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~------------------------------------ 64 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKS------------------------------------ 64 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEE------------------------------------
Confidence 4568999999999999999999998754544322 23222100
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
........+.||||||+.+.... .+...+.+...+..+++.+|++|+|++... +...
T Consensus 65 -------------------~~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~ 121 (260)
T 2xtp_A 65 -------------------QGSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQ 121 (260)
T ss_dssp -------------------EEEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHH
T ss_pred -------------------EEEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHH
Confidence 11112356899999999764322 222333455666778899999988776553 3222
Q ss_pred --HHHHHHHHhCCC--CCceEEEec-cCCCCCCCCcHHHHHh--------CcccccCCC---e--EEEEcCChhhhccCC
Q 007538 195 --DAMKLAREVDPT--GERTFGVLT-KLDLMDKGTNALDVLE--------GRSYRLQHP---W--VGIVNRSQADINRNI 256 (599)
Q Consensus 195 --~~l~la~~~d~~--g~rti~Vlt-K~Dl~~~~~~~~~~~~--------~~~~~l~~g---~--~~v~~~s~~~i~~~~ 256 (599)
..++.+..+... +.+.++|+| |+|+.+. ...+.+. .....++.. | +.+++..+.++++++
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~ 199 (260)
T 2xtp_A 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELM 199 (260)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHH
Confidence 233444443222 457888888 9999843 2222111 001111111 2 456666667777777
Q ss_pred CHHHHHHHHH
Q 007538 257 DMIVARRKER 266 (599)
Q Consensus 257 ~~~~~~~~E~ 266 (599)
..+.....+.
T Consensus 200 ~~i~~~~~~~ 209 (260)
T 2xtp_A 200 DCIEDLLMEK 209 (260)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666555543
No 28
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.51 E-value=9.6e-15 Score=138.87 Aligned_cols=161 Identities=11% Similarity=0.130 Sum_probs=96.3
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
....+|+|+|.+|+|||||+|+|++..+.+......+ . ...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~-~--~~~------------------------------------ 63 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-V--EFS------------------------------------ 63 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS-E--EEE------------------------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc-e--eEE------------------------------------
Confidence 3456999999999999999999999876322111100 0 000
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--cc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--AT 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~ 193 (599)
...+.+ ......+.||||||..+. ..+...|+++++++|+|++..+... ..
T Consensus 64 -------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~ 116 (193)
T 2oil_A 64 -------------TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTKHQTYAVV 116 (193)
T ss_dssp -------------EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred -------------EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHH
Confidence 000011 112346899999998432 3456678999999988776544221 11
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
..++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 117 ~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 117 ERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp HHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 234444444445578999999999997643221111111112234568888888888777666554433
No 29
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.51 E-value=3e-14 Score=135.43 Aligned_cols=162 Identities=21% Similarity=0.298 Sum_probs=95.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|+|||||+|+|+|..+.+..... |
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK----P----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC----C-----------------------------------------
Confidence 5789999999999999999999998753211100 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCC---CeEEEEEecCCccccc
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQDIAT 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~---~~iIL~v~~a~~d~~~ 193 (599)
| .+.......+ ...+.||||||+..... +.+..+.+..+...|++.+ ++++++++.. ... .
T Consensus 57 ---~----~t~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~-~ 120 (195)
T 1svi_A 57 ---G----KTQTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIVDLR-HAP-S 120 (195)
T ss_dssp ----------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT-SCC-C
T ss_pred ---C----ceeeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECC-CCC-C
Confidence 0 0000011111 23699999999755322 2333566778888888877 7776666543 333 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcH--HHHHhC-cccccCCCeEEEEcCChhhhccCCCHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNA--LDVLEG-RSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~--~~~~~~-~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.....+.+.+...+.++++|+||+|+.+..... .+.+.. ........|+.+++.++.++++++..+
T Consensus 121 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 121 NDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHH
Confidence 233334444444678999999999998754311 111111 111234567888888877776655443
No 30
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.51 E-value=1.3e-14 Score=135.49 Aligned_cols=157 Identities=12% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|+|||||+|+|++..+. ......+.....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~--------------------------------------- 53 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFG--------------------------------------- 53 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEE---------------------------------------
Confidence 4579999999999999999999998752 211111111100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
...+.+ ......+.||||||... ...+...|++++|++|++++..+... ...
T Consensus 54 ------------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 54 ------------TRIIEV-SGQKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRRSTYNHLS 107 (179)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECTTGGG-------------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCeEEEEEEEECCCChH-------------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHH
Confidence 001111 11124689999999622 34567889999999988776554321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.++..++.....+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 34444555555678999999999997543321111111122344678888888888776655443
No 31
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.51 E-value=3.3e-14 Score=134.50 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=69.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHHHHHHHHHhCC-CCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDP-TGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~~l~la~~~d~-~g~rti~VltK 216 (599)
..+.||||||.. ....+...|++++|++|+|++..+... . ...++..+..... .+.++++|+||
T Consensus 70 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (195)
T 3bc1_A 70 IHLQLWDTAGLE-------------RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136 (195)
T ss_dssp EEEEEEEECCSG-------------GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEEC
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 468999999982 345678899999999988776544321 1 1233333333332 57899999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
+|+.+......+.+.......+..|+.+++.++.++++.+..+....
T Consensus 137 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 137 SDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99976432211111111223346788888888877776665554443
No 32
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=1.5e-14 Score=139.25 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=100.7
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
....+|+|+|++|+|||||+|+|++..+ +.....+.-.. ..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~--~~------------------------------------ 64 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVD--FM------------------------------------ 64 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEE--EE------------------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCcccee--EE------------------------------------
Confidence 3456999999999999999999998865 22221110000 00
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--cc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--AT 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~ 193 (599)
...+.+ ......+.||||||. +.+..+...|++.+|++|+|++..+... ..
T Consensus 65 -------------~~~~~~-~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~ 117 (201)
T 2ew1_A 65 -------------IKTVEI-NGEKVKLQIWDTAGQ-------------ERFRSITQSYYRSANALILTYDITCEESFRCL 117 (201)
T ss_dssp -------------EEEEEE-TTEEEEEEEEEECCS-------------GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTH
T ss_pred -------------EEEEEE-CCEEEEEEEEECCCc-------------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 000111 111235889999996 2346678889999999988876554321 11
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
..++..++...+.+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+....
T Consensus 118 ~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 118 PEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3455556666666789999999999975432211111111223456788888888888877666555443
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.51 E-value=3.9e-15 Score=139.30 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=92.8
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...++|+|+|.+|+|||||+|+|+|..+.+......|... .
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---~------------------------------------ 47 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF---K------------------------------------ 47 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEE---E------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEE---E------------------------------------
Confidence 3677999999999999999999999876322111111100 0
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--c
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--T 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~ 193 (599)
...+.+ ......+.||||||.... ..+...|++.+|++|+|++..+.... .
T Consensus 48 -------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 100 (181)
T 3tw8_B 48 -------------IRTVEI-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTSAESFVNV 100 (181)
T ss_dssp -------------EEEEEE-TTEEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred -------------EEEEEE-CCEEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHH
Confidence 000011 111246899999996332 23455688999999887765543210 1
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
..++....... .+.++++|+||+|+.+................+..|+.+++.++.++++.+..+...
T Consensus 101 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 101 KRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp HHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 12333333333 357999999999987644321111111122334678888888887777666554443
No 34
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.51 E-value=1.7e-14 Score=132.95 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=92.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 43 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK--------------------------------------- 43 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEE---------------------------------------
Confidence 35899999999999999999998875 32222222111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
.+.+ ......+.||||||.. ....+...|++.+++++++++..+... ....
T Consensus 44 -------------~~~~-~~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 44 -------------KVVL-DGEEVQIDILDTAGQE-------------DYAAIRDNYFRSGEGFLCVFSITEMESFAATAD 96 (168)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcc-------------hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 0001 1112468899999962 235677889999999988776554321 0122
Q ss_pred HHHH-HHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKL-AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~l-a~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
++.. .......+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence 2222 3333445789999999999976433211111111222345688888888877776555443
No 35
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=1e-14 Score=138.70 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=102.3
Q ss_pred ccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
+....+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~----------------------------------------- 58 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI----------------------------------------- 58 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETT-----------------------------------------
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeee-----------------------------------------
Confidence 346679999999999999999999987752211111000
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--c
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--A 192 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~ 192 (599)
......+.+ ......+.||||||. +....+...|++.+|++|+|++..+... .
T Consensus 59 -----------~~~~~~~~~-~~~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~ 113 (191)
T 3dz8_A 59 -----------DFKVKTVYR-HEKRVKLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNA 113 (191)
T ss_dssp -----------TEEEEEEEE-TTTTEEEEEECHHHH-------------HHCHHHHHHHHTTCCEEEEEEETTCHHHHHT
T ss_pred -----------EEEEEEEEE-CCEEEEEEEEeCCCh-------------HHHHHHHHHHHccCCEEEEEEECcCHHHHHH
Confidence 000011111 122346899999995 4556788899999999988776554221 1
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
...++..++.....+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 114 ~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 114 VQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 2345555666666688999999999997543322221221122345678888888888777666554443
No 36
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.51 E-value=1.4e-14 Score=145.15 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=98.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.++|+|+|++|+|||||+|+|+|..+.+.....+|...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~------------------------------------------ 42 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEK------------------------------------------ 42 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEE------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEE------------------------------------------
Confidence 45899999999999999999999875211111111111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCcccccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~v~~a~~d~~~~~ 195 (599)
... .+.. ....+.||||||..+.... ... +.+...|+ ..+|++|++++..+. ..
T Consensus 43 ----------~~~--~~~~-~~~~~~l~DtpG~~~~~~~----~~~---e~v~~~~~~~~~~d~ii~V~D~t~~----~~ 98 (258)
T 3a1s_A 43 ----------KEG--VFTY-KGYTINLIDLPGTYSLGYS----SID---EKIARDYLLKGDADLVILVADSVNP----EQ 98 (258)
T ss_dssp ----------EEE--EEEE-TTEEEEEEECCCCSSCCSS----SHH---HHHHHHHHHHSCCSEEEEEEETTSC----HH
T ss_pred ----------EEE--EEEE-CCeEEEEEECCCcCccCCC----CHH---HHHHHHHHhhcCCCEEEEEeCCCch----hh
Confidence 001 1111 2357899999999764322 122 34556666 579988887765542 33
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~---~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.+.+..++...+.|+++|+||+|+.+... +...+ ...++.+++.++++++.++++++..+..
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYEL----QKHLGIPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHH----HHHHCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHH----HHHcCCCEEEEEeeCCcCHHHHHHHHHH
Confidence 44455666666899999999999975322 12222 2234578999999998888776665544
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=6.4e-15 Score=140.24 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=96.7
Q ss_pred ccCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
+....+|+|+|++|+|||||+|+|++..+.+ ... .|... ...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~-~~~~~-~~~----------------------------------- 61 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDH-NIS-PTIGA-SFM----------------------------------- 61 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-TCC-CCSSE-EEE-----------------------------------
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCC-CcC-CCcce-eEE-----------------------------------
Confidence 3456699999999999999999999987521 110 01000 000
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--c
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--A 192 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~ 192 (599)
...+.+ ......+.||||||... ...+...|++.++++|+|++..+... .
T Consensus 62 --------------~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~d~~~~~s~~~ 113 (192)
T 2fg5_A 62 --------------TKTVPC-GNELHKFLIWDTAGQER-------------FHSLAPMYYRGSAAAVIVYDITKQDSFYT 113 (192)
T ss_dssp --------------EEEEEC-SSSEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCTHHHHH
T ss_pred --------------EEEEEe-CCEEEEEEEEcCCCchh-------------hHhhhHHhhccCCEEEEEEeCCCHHHHHH
Confidence 000001 11234689999999632 24456678999999988776554321 1
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
...++..++...+.+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+.
T Consensus 114 ~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 114 LKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 12344455555566789999999999975332211112111223446788899988888776555443
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.51 E-value=1.5e-14 Score=133.82 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=93.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|.+|+|||||+|+|+|..+.+....... . ...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~-~~~-------------------------------------- 44 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--A-SFM-------------------------------------- 44 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS--E-EEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee--E-EEE--------------------------------------
Confidence 45899999999999999999999875322111000 0 000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~ 195 (599)
...+.+ ......+.||||||... ...+...|++.+|++|++++..+... . ...
T Consensus 45 -----------~~~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 45 -----------TKTVQY-QNELHKFLIWDTAGLER-------------FRALAPMYYRGSAAAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEcCCCchh-------------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHH
Confidence 000011 11124688999999832 24456778999999988776554321 1 123
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
++..+........++++|+||+|+.+......+.........+..|+.+++.++.++++.+..
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 445555555567889999999999864332122121112233467888888888777655443
No 39
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.50 E-value=4e-14 Score=137.26 Aligned_cols=110 Identities=13% Similarity=0.193 Sum_probs=71.3
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC----CCCceEEEec
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP----TGERTFGVLT 215 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~----~g~rti~Vlt 215 (599)
..+.||||||. +.+..+...|++.+|++|+|++..+.. .......+...+.. .+.++++|+|
T Consensus 84 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~iilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLMFDLTSQQ-SFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESH-------------HHHHHHHHHHHTTCCEEEEEEETTCHH-HHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCc-------------HhHHhHHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 45899999995 456778889999999998877654422 12233334444432 4689999999
Q ss_pred cCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 216 K~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
|+|+.+......+.........+..|+.+++.++.++++.+..+....
T Consensus 150 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 150 KADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 999976432111111111223456789999998888877766555443
No 40
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=140.81 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCccccc--ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
..++|+|||.+|||||||+|+|+|..+.+.+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 557999999999999999999999987544432 3333331111
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
+ ......++||||||+...... ..+..+.+...+..+.+.++++|+++.....+....
T Consensus 73 -------------------~-~~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 130 (239)
T 3lxx_A 73 -------------------S-SWKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEH 130 (239)
T ss_dssp -------------------E-EETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHH
T ss_pred -------------------E-EeCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHH
Confidence 1 112346899999999865432 233445667777777888999888775433222222
Q ss_pred HHHHHHHHhC--CCCCceEEEeccCCCCCCC
Q 007538 195 DAMKLAREVD--PTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 195 ~~l~la~~~d--~~g~rti~VltK~Dl~~~~ 223 (599)
.++....... ....++++|+||+|+.+..
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 3333332211 1235899999999998653
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.50 E-value=2.7e-14 Score=132.90 Aligned_cols=161 Identities=15% Similarity=0.129 Sum_probs=87.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|++|+|||||+|+|+|..+.+....+.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~------------------------------------------- 39 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED------------------------------------------- 39 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS-------------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc-------------------------------------------
Confidence 3468999999999999999999998752211110000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~ 194 (599)
+ ....+.+ ......+.+|||||.... ....+...|++.+++++++++..+... . ..
T Consensus 40 --------~--~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (175)
T 2nzj_A 40 --------V--YERTLTV-DGEDTTLVVVDTWEAEKL-----------DKSWSQESCLQGGSAYVIVYSIADRGSFESAS 97 (175)
T ss_dssp --------E--EEEEEEE-TTEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHH
T ss_pred --------e--eEEEEEE-CCEEEEEEEEecCCCCcc-----------chhhhHHhhcccCCEEEEEEECCCHHHHHHHH
Confidence 0 0001111 111235789999997431 123456778999999988776554321 1 11
Q ss_pred HHHHHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
.++..+... ...+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 98 ~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 98 ELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp HHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 233323332 23478999999999998643321111111112234578888888888887766655443
No 42
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.50 E-value=2.5e-14 Score=131.24 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=93.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccc-cccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.|+|+|+|++|+|||||+|+|++..+.+.+. ..+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 3789999999999999999999886421111 1111111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--~ 194 (599)
....+.. ....+.||||||..... +....+......+++.++++|++++..+. +.. .
T Consensus 40 -------------~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~ 98 (161)
T 2dyk_A 40 -------------KEGVVET-DRGRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEVVLFAVDGRAE-LTQADY 98 (161)
T ss_dssp -------------EEEEEEE-TTEEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSEEEEEEESSSC-CCHHHH
T ss_pred -------------eEEEEEe-CCceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCEEEEEEECCCc-ccHhHH
Confidence 0101111 22468999999986532 12355677788899999999887765542 212 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~ 258 (599)
....+.+. .+.++++|+||+|+.+......++. .++. +|+.+++.++.++++.+..
T Consensus 99 ~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~ 155 (161)
T 2dyk_A 99 EVAEYLRR---KGKPVILVATKVDDPKHELYLGPLY-----GLGFGDPIPTSSEHARGLEELLEA 155 (161)
T ss_dssp HHHHHHHH---HTCCEEEEEECCCSGGGGGGCGGGG-----GGSSCSCEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHh---cCCCEEEEEECcccccchHhHHHHH-----hCCCCCeEEEecccCCChHHHHHH
Confidence 22233333 4678999999999986532222221 3344 6889999888877665543
No 43
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.50 E-value=2.8e-14 Score=134.11 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=98.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+ +.....++.......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 58 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 58 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEE-------------------------------------
Confidence 456899999999999999999998875 322222221111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+.+ ......+.||||||... ...+...|++.++++|++++..+... ...
T Consensus 59 ---------------~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (187)
T 2a9k_A 59 ---------------VVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATA 109 (187)
T ss_dssp ---------------EEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 001 11123688999999632 24567788999999988876554321 112
Q ss_pred HHHH-HHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 195 DAMK-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 195 ~~l~-la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.++. +.+.....+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+.....+
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 2222 2333444578999999999997643221111111122344568888888888887776665554443
No 44
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=136.49 Aligned_cols=162 Identities=16% Similarity=0.199 Sum_probs=99.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|||||||+|+|++..+ +.....++......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 53 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 53 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEE--------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEE--------------------------------------
Confidence 457999999999999999999998875 32222222111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
.+.+ ......+.||||||... ...+...|++.++++|++++..+... ...
T Consensus 54 --------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 105 (206)
T 2bov_A 54 --------------KVVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATA 105 (206)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 0011 11123688999999633 24567788999999988776554321 112
Q ss_pred HHHHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 195 DAMKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 195 ~~l~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.++..+.. ....+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++.+..+.....+
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 106 DFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 23333333 334578999999999997643321111111122334578999999988888777666554443
No 45
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.50 E-value=1.4e-14 Score=156.67 Aligned_cols=157 Identities=21% Similarity=0.244 Sum_probs=86.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+-.+|+++|.+|+|||||+|+|+|.++ .+++..| +.+.+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~---------gtT~d--------------------------- 261 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR-----AIVTDLP---------GTTRD--------------------------- 261 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB-----SCCSCCT---------TCCHH---------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCC---------CeeEE---------------------------
Confidence 344799999999999999999999765 2223222 00000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHH-HHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED-IESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~-i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
+....+ .+ +...++||||||+.+.. +..+. .-..+..+++.+|+++++++..+ .. ...
T Consensus 262 --------~~~~~i--~~---~g~~v~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD~vl~VvD~s~-~~-~~~ 320 (462)
T 3geh_A 262 --------VVESQL--VV---GGIPVQVLDTAGIRETS------DQVEKIGVERSRQAANTADLVLLTIDAAT-GW-TTG 320 (462)
T ss_dssp --------HHHHEE--EE---TTEEEEECC--------------------------CCCCSCSEEEEEEETTT-CS-CHH
T ss_pred --------EEEEEE--EE---CCEEEEEEECCccccch------hHHHHHHHHHHhhhhhcCCEEEEEeccCC-CC-CHH
Confidence 000011 11 23568999999995421 11111 12335678899999888776544 33 233
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
...+.+.+.. .++++|+||+|+.+..... .........+++.+++.++.++++++..+..
T Consensus 321 ~~~i~~~l~~--~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~ 380 (462)
T 3geh_A 321 DQEIYEQVKH--RPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAILE 380 (462)
T ss_dssp HHHHHHHHTT--SCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhccC--CcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445555543 6999999999998643211 1111223467899999999888776655544
No 46
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=138.49 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=96.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+.+......+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~------------------------------------------ 61 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVE------------------------------------------ 61 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CC------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccce------------------------------------------
Confidence 45699999999999999999999987522111111100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+. ...+.+ ......+.||||||. +....+...|++.+|++|+|++..+... ...
T Consensus 62 --------~~--~~~~~~-~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 117 (200)
T 2o52_A 62 --------FG--SRVVNV-GGKTVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA 117 (200)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTH-------------HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------eE--EEEEEE-CCeeeEEEEEcCCCc-------------HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 00 001111 111246899999996 3344556778999999988876554321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.++..+......+.++++|+||+|+.+.... ..+. .......+..|+.+++.++.++++.+..+.....+
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3444445555567899999999999754321 1111 11112344678999999998888777666554433
No 47
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.49 E-value=1.7e-14 Score=134.79 Aligned_cols=158 Identities=15% Similarity=0.288 Sum_probs=99.2
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...++|+|+|++|||||||+|+|++..+.+.....+|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 4678999999999999999999999876332222111111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
... .+.+ +...+.||||||..... .+...|+..+|++|++++..+ .. ...
T Consensus 46 ----------~~~--~~~~---~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~-~~-~~~ 95 (178)
T 2lkc_A 46 ----------GAY--QVTV---NDKKITFLDTPGHEAFT-------------TMRARGAQVTDIVILVVAADD-GV-MPQ 95 (178)
T ss_dssp ----------CCC--EEEE---TTEEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEEEETTC-CC-CHH
T ss_pred ----------eEE--EEEe---CCceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEEEECCC-CC-cHH
Confidence 001 1111 12457899999975422 123467888999888775433 22 355
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhC-cccccC----CCeEEEEcCChhhhccCCCHHHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEG-RSYRLQ----HPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~-~~~~~~~~-~~~~l~----~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.+..++.+...+.++++|+||+|+.+... .....+.. ...... ..|+.+++.++.++++++..+....
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 55666666666789999999999986431 12222221 111111 3588899999888887776655443
No 48
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.49 E-value=1.8e-14 Score=138.51 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=95.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+ +......+-..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 44 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVD----------------------------------------- 44 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCC-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccce-----------------------------------------
Confidence 456999999999999999999999875 22211100000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+. ...+.+ ......+.||||||.... ..+...|++.+|++|++++..+.+. ...
T Consensus 45 --------~~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~ 100 (206)
T 2bcg_Y 45 --------FK--IKTVEL-DGKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYDVTDQESFNGVK 100 (206)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------eE--EEEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEECcCHHHHHHHH
Confidence 00 001111 111246899999997432 2345678999999988776554321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
.++..+......+.++++|+||+|+.+......+.........+.+|+.+++.++.++++.+..+...
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 101 MWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168 (206)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 34444555555678999999999998643321111111112344678888888877777666555443
No 49
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.49 E-value=5.1e-14 Score=133.46 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=91.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+.+......+.-
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 56 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD------------------------------------------ 56 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE------------------------------------------
Confidence 45689999999999999999999877632211111100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHH-HHHHHhhcCCCeEEEEEecCCccc--cc
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIE-SMVRSYVEKPNSVILAISPANQDI--AT 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~-~~~~~yi~~~~~iIL~v~~a~~d~--~~ 193 (599)
+. ...+.+ ......+.||||||. +.+. .+...|++++|++|+|++..+... ..
T Consensus 57 --------~~--~~~~~~-~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 57 --------FR--ERAVDI-DGERIKIQLWDTAGQ-------------ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL 112 (189)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEEECCCS-------------HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred --------EE--EEEEEE-CCEEEEEEEEECCCc-------------hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 00 001111 111246899999996 3344 678889999999988776554211 11
Q ss_pred HHHHHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCCh---hhhcc
Q 007538 194 SDAMKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ---ADINR 254 (599)
Q Consensus 194 ~~~l~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~---~~i~~ 254 (599)
..++..+.. ....+.++++|+||+|+.+......+.........+..|+.+++.++ .++.+
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 234433333 33567899999999999764321111111112234567888888887 55443
No 50
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.49 E-value=3.4e-14 Score=136.47 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=97.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+ +.... +|.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~-~t~------------------------------------------- 62 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQG-STI------------------------------------------- 62 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCCCC-CCc-------------------------------------------
Confidence 456899999999999999999998765 21111 010
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~ 194 (599)
+..+. ...+.+ ......+.||||||.. ....+...|++.++++|+|++..+.. + ...
T Consensus 63 -----~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 121 (201)
T 2hup_A 63 -----GVDFT--MKTLEI-QGKRVKLQIWDTAGQE-------------RFRTITQSYYRSANGAILAYDITKRSSFLSVP 121 (201)
T ss_dssp -------CEE--EEEEEE-TTEEEEEEEECCTTCG-------------GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHH
T ss_pred -----ceEEE--EEEEEE-CCEEEEEEEEECCCcH-------------hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 00000 001111 1112468999999972 33567888999999998887655432 1 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.++..+......+.++++|+||+|+.+......+.+.......+. .|+.+++.++.++++.+..+....
T Consensus 122 ~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 122 HWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 344445555556789999999999976432111111111222345 678889988888877766555443
No 51
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.49 E-value=2.1e-14 Score=136.50 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=96.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+.+......+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 57 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE------------------------------------------ 57 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce------------------------------------------
Confidence 44589999999999999999999887632221111100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+. ...+.+ ......+.||||||... +..+...|++.++++|+|++..+... ...
T Consensus 58 --------~~--~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 113 (191)
T 2a5j_A 58 --------FG--ARMVNI-DGKQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRETFNHLT 113 (191)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTGGG-------------TSCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------eE--EEEEEE-CCEEEEEEEEECCCchh-------------hhhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 001111 11124689999999633 23345678899999988876554321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+....
T Consensus 114 ~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 114 SWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 344455555556789999999999975432111111111223345788888888888877666554443
No 52
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.49 E-value=6.1e-14 Score=132.88 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=97.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccc-cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..|+|+|+|.+|||||||+|+|+|..+.+.+... +|+.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~---------------------------------------- 61 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI---------------------------------------- 61 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCE----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCe----------------------------------------
Confidence 6789999999999999999999998742211111 11100
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCC---CeEEEEEecCCcccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQDIA 192 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~---~~iIL~v~~a~~d~~ 192 (599)
. .. .....+.+|||||+..... +....+.+..+...|++.+ ++++++++ +....
T Consensus 62 ---------------~--~~-~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d-~~~~~- 118 (195)
T 3pqc_A 62 ---------------N--FY-LVNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVD-GRIPP- 118 (195)
T ss_dssp ---------------E--EE-EETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCC-
T ss_pred ---------------E--EE-EECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEec-CCCCC-
Confidence 0 00 0134688999999754321 2223455777888888776 66655554 43333
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCcccc-cCCCeEEEEcCChhhhccCCCHHHH
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYR-LQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
......+.+.+...+.|+++|+||+|+.+.... ..+.+...... ....|+.+++.++.++++++..+..
T Consensus 119 ~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 119 QDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 222333444444447899999999999865421 11112111111 2357888888888887766655444
No 53
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=2.3e-14 Score=132.43 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=90.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++|+|||||+|+|++..+.+......+... .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~---~--------------------------------------- 41 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF---L--------------------------------------- 41 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE---E---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---E---------------------------------------
Confidence 4799999999999999999998875322211111000 0
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
...+.+ ......+.||||||... +..+...|++++|++|++++..+... ....+
T Consensus 42 ----------~~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 97 (170)
T 1ek0_A 42 ----------TQRVTI-NEHTVKFEIWDTAGQER-------------FASLAPXYYRNAQAALVVYDVTKPQSFIKARHW 97 (170)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCChh-------------hhhhhhhhhccCcEEEEEEecCChHHHHHHHHH
Confidence 000011 11124689999999632 24457788999999988776554321 11123
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~---~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
+.........+.++++|+||+|+.+... ...+.........+..|+.+++.++.++++.+.
T Consensus 98 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 98 VKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 3334444455789999999999986421 111111111122345688888888777665443
No 54
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.49 E-value=7.3e-14 Score=141.14 Aligned_cols=172 Identities=14% Similarity=0.187 Sum_probs=87.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 4899999999999999999999887554432111100
Q ss_pred cCCCCCcCCccEEEEEecCC-CCCcEEEeCCCCCccCCCC-CCccHHHHHHHHHHHhhcC-------------CCeEEEE
Q 007538 119 TGKTKQISPIPIHLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPDTIVEDIESMVRSYVEK-------------PNSVILA 183 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~~-q~~~~~~~i~~~~~~yi~~-------------~~~iIL~ 183 (599)
. ..+..+.....+...+ ...++||||||+....... .-..+...+.+....|+.. +|+++++
T Consensus 46 -~--~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~ 122 (274)
T 3t5d_A 46 -K--KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYF 122 (274)
T ss_dssp ------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEE
T ss_pred -C--CceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEE
Confidence 0 0011111111222111 2378999999996532211 1111222333334556554 6788888
Q ss_pred EecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 184 ISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 184 v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
++++...+ ......+.+.+.. +.++|+|+||+|+...... ..+.+.......+..++.+++.++.++.++...
T Consensus 123 i~~~~~~~-~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~ 197 (274)
T 3t5d_A 123 IAPSGHGL-KPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKK 197 (274)
T ss_dssp ECSCCSSC-CHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHH
T ss_pred ecCCCCCC-CHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHH
Confidence 88777555 3444567777776 8999999999999854321 111122222233456677777777776655543
No 55
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.49 E-value=1.5e-14 Score=135.09 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=92.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++|+|||||+|+|++..+.+......+.-. ..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~---~~-------------------------------------- 53 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF---LS-------------------------------------- 53 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---EE--------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEE---EE--------------------------------------
Confidence 5899999999999999999998775322211111100 00
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~ 196 (599)
..+.+ ......+.||||||... ...+...|++++|++|+|++..+.. + ....+
T Consensus 54 -----------~~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 108 (179)
T 2y8e_A 54 -----------KTMYL-EDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108 (179)
T ss_dssp -----------EEEEE-TTEEEEEEEEEECCSGG-------------GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHH
T ss_pred -----------EEEEE-CCeEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 00001 11123589999999632 2345667889999998877654421 1 11234
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+..+....+.+.++++|+||+|+.+................+..|+.+++.++.++++.+..+
T Consensus 109 ~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp HHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 444444444578999999999997643321111111122335678889998887776554433
No 56
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.49 E-value=2.1e-14 Score=144.84 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=96.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.++|+++|++|+|||||+|+|+|..+.+.....+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~------------------------------------------ 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER------------------------------------------ 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE------------------------------------------
Confidence 46899999999999999999999764222111112111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~d~~~~~ 195 (599)
....+.. ...+.||||||..+.... .. -+.+...|+. ++|++|++++..+. ..
T Consensus 41 ------------~~~~~~~--~~~l~l~DtpG~~~~~~~----~~---~e~v~~~~~~~~~~d~vi~V~D~t~~----e~ 95 (272)
T 3b1v_A 41 ------------KSGLVKK--NKDLEIQDLPGIYSMSPY----SP---EAKVARDYLLSQRADSILNVVDATNL----ER 95 (272)
T ss_dssp ------------EEEECTT--CTTEEEEECCCCSCSSCS----SH---HHHHHHHHHHTTCCSEEEEEEEGGGH----HH
T ss_pred ------------EEEEEec--CCeEEEEECCCcCccCCC----Ch---HHHHHHHHHhcCCCCEEEEEecCCch----Hh
Confidence 1111222 467999999998764322 11 2345667776 59988877765442 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~---~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.+.+..++...+.|+++|+||+|+..... +...+ ...++.+++.++++++.++++++..+.
T Consensus 96 ~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 96 NLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKL----SYHLGVPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp HHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHH----HHHHTSCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHH----HHHcCCCEEEEEccCCCCHHHHHHHHH
Confidence 33444444446889999999999864321 22222 123456899999999988876655443
No 57
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.49 E-value=1.1e-14 Score=137.03 Aligned_cols=160 Identities=12% Similarity=0.134 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+.+.....++.-. .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~------------------------------------- 46 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF---K------------------------------------- 46 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEE---E-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee---E-------------------------------------
Confidence 456899999999999999999998765211111111000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
...+.+ ......+.||||||.. ....+...|++++|++|+|++..+... ...
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (183)
T 2fu5_C 47 ------------IRTIEL-DGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIMLVYDITNEKSFDNIR 100 (183)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEcCCCCh-------------hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 000111 1112468999999973 234556778999999988776554321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
.++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 101 NWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp HHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 34444444445578999999999997643211111111122334567888888877777666555443
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.49 E-value=1.7e-14 Score=133.03 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=90.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++|+|||||+|+|++..+ +.....++.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 41 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYR----------------------------------------- 41 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEE-----------------------------------------
Confidence 4799999999999999999998765 2222111111100
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~ 196 (599)
..+.+ ......+.||||||.... ..+...|++++++++++++..+.. + ....+
T Consensus 42 -----------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 42 -----------KQVEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96 (167)
T ss_dssp -----------EEEES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00001 111245889999997432 235567888899998877655431 1 11223
Q ss_pred HHHH-HHhCCCCCceEEEeccCCCCCCCCcHHHHHhCccccc-CCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLA-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRL-QHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la-~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+... +.....+.|+++|+||+|+.+......+......... ..+|+.+++.++.++++.+..+
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 3323 3334567899999999999764322111111111122 4568888888887776655443
No 59
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.49 E-value=1.9e-14 Score=136.43 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=95.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+.+......+ +...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~------------------------------------- 60 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDFK------------------------------------- 60 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC---CEEE-------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee---EEEE-------------------------------------
Confidence 456999999999999999999999876322111100 0000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
...+.+ ......+.||||||.... ..+...|++.+|++|+|++..+... ...
T Consensus 61 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 114 (189)
T 2gf9_A 61 ------------VKTVYR-HDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQ 114 (189)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHH
Confidence 000011 111346899999996432 2235678999999988776544321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
.++..+......+.++++|+||+|+.+......+........++..|+.+++.++.++++.+..+...
T Consensus 115 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 115 DWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34445555555678999999999997643211111111112234567888888777776655544443
No 60
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.48 E-value=1.9e-14 Score=134.65 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|+|||||+|+|++..+ +.....++..... .
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~-~------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYT-K------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEE-E-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEE-E-------------------------------------
Confidence 456999999999999999999999865 2222222211110 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~ 194 (599)
.+.+ ......+.||||||.... ..+...|++.++++|++++..+... . ..
T Consensus 49 --------------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (181)
T 2fn4_A 49 --------------ICSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVG 100 (181)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHH
Confidence 0001 111245789999997432 2345567888999988776554221 0 11
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 195 DAM-KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 195 ~~l-~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
.++ .+.+.....+.++++|+||+|+.+................+..|+.+++.++.++++.+..+.....
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 222 2334455667899999999999764322111111112233557888888888888776665554443
No 61
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.48 E-value=6.8e-14 Score=130.55 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=93.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|+|||||+|+|++..+.+......+. ...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~------------------------------------- 45 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV---EFL------------------------------------- 45 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSE---EEE-------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee---eEE-------------------------------------
Confidence 4568999999999999999999987652211111000 000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~ 194 (599)
...+.+ ......+.||||||.. ....+...|++.+++++++++..+... . ..
T Consensus 46 ------------~~~~~~-~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 99 (177)
T 1wms_A 46 ------------NKDLEV-DGHFVTMQIWDTAGQE-------------RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS 99 (177)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECCCCG-------------GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCch-------------hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 001111 1112468999999962 235677889999999988776544321 0 12
Q ss_pred HHHHHHHHhC----CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLAREVD----PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~~d----~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.++....... ..+.++++|+||+|+.+......+...-.......+|+.+++.++.++++.+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 100 NWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 2333333222 256899999999999743322221111001133567899999988887766554443
No 62
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.48 E-value=1.2e-14 Score=146.83 Aligned_cols=155 Identities=20% Similarity=0.272 Sum_probs=95.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccc-cccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
-++|+++|.+|||||||+|+|+|..+ +.+. ..+|.-+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~----------------------------------------- 40 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVER----------------------------------------- 40 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEE-----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEE-----------------------------------------
Confidence 35899999999999999999999874 2221 1112111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~v~~a~~d~~~~ 194 (599)
..-.+.. ....+.||||||+.+........... +.+...|+ +.+|++|++++..+. .
T Consensus 41 -------------~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~~----~ 99 (274)
T 3i8s_A 41 -------------KEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASNL----E 99 (274)
T ss_dssp -------------EEEEEEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGGH----H
T ss_pred -------------EEEEEEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCCh----H
Confidence 1111111 23568999999997754321112232 23455565 789999887766552 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~---~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
..+.+..++...+.|+++|+||+|+.+... +...+ ...++.+++.+++.++.++++++..+
T Consensus 100 ~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~i~~SA~~g~gi~el~~~i 163 (274)
T 3i8s_A 100 RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDAL----SARLGCPVIPLVSTRGRGIEALKLAI 163 (274)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHH----HHHHTSCEEECCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH----HHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 333444444444789999999999975432 11121 22345789999999988887655433
No 63
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.48 E-value=4.4e-14 Score=132.32 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=93.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+.+......+. .
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~----------------------------------------- 48 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-A----------------------------------------- 48 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCC-S-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCcee-E-----------------------------------------
Confidence 3458999999999999999999988763221111100 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
+. ...+.+ ......+.||||||... +..+...|++.+|++|++++..+... ...
T Consensus 49 --------~~--~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 104 (181)
T 2efe_B 49 --------FF--SQTLAV-NDATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVFDVTNQASFERAK 104 (181)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEEECCCSGG-------------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------EE--EEEEEE-CCEEEEEEEEeCCCChh-------------hhhhhHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 000111 11124689999999632 24456778999999988776544221 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 33444444444578899999999997654321111111112234568888888887776655443
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.48 E-value=4e-14 Score=134.86 Aligned_cols=106 Identities=12% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH---HHHHHHHHhCCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~---~~l~la~~~d~~g~rti~VltK 216 (599)
..+.||||||... ...+...|++.+|++|+|++..+... .. .++..+.... +.++++|+||
T Consensus 93 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~s-~~~~~~~~~~i~~~~--~~piilv~NK 156 (208)
T 3clv_A 93 IKFDIWDTAGQER-------------YASIVPLYYRGATCAIVVFDISNSNT-LDRAKTWVNQLKISS--NYIIILVANK 156 (208)
T ss_dssp EEEEEEECTTGGG-------------CTTTHHHHHTTCSEEEEEEETTCHHH-HHHHHHHHHHHHHHS--CCEEEEEEEC
T ss_pred eEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCHHH-HHHHHHHHHHHHhhC--CCcEEEEEEC
Confidence 4689999999633 23456788999999888776544321 12 2232333322 3899999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
+|.........+ +.......+..|+.+++.++.++++.+..+...
T Consensus 157 ~D~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 157 IDKNKFQVDILE-VQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp TTCC-CCSCHHH-HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCcccccCCHHH-HHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 993222222111 111122245678889998888877666555443
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.48 E-value=6.2e-14 Score=132.16 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=95.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|++|||||||+|+|++..+ +.....++.......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~--------------------------------------- 44 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQ--------------------------------------- 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEE---------------------------------------
Confidence 4899999999999999999998875 222222221110000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
+. .......+.||||||... ...+...|++.+++++++++..+... ....+
T Consensus 45 -------------~~-~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 45 -------------VV-IDGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY 97 (189)
T ss_dssp -------------EE-ETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred -------------EE-ECCcEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 00 111123478999999632 34456778889999988776554321 11223
Q ss_pred HHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 197 MKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 197 l~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
+..... ....+.|+++|+||+|+.+...... .........+..|+.+++.++.++++.+..+....
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-QAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCSSCHH-HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccccCHH-HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 333333 3445789999999999985443221 11112223456789999998888887776655443
No 66
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.48 E-value=1.3e-14 Score=140.85 Aligned_cols=113 Identities=10% Similarity=0.055 Sum_probs=72.5
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.||||||.... ..+...|+..+|++|+|++..+... ....++..+....+.+.++++|+||+
T Consensus 61 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 61 IKFNVWDTAGQEKK-------------AVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEEecCCchhh-------------chHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 45899999997432 2234567889999988776554321 12344555666656678999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
|+.+......+.........+..|+.+++.++.++++.+..+.....+
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred CCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 998653322222222233445679999999999988877666555443
No 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.48 E-value=3.6e-14 Score=131.40 Aligned_cols=160 Identities=12% Similarity=0.052 Sum_probs=88.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
+.+|+|+|++|+|||||+|+|+|..+-.......|.-.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDT------------------------------------------ 39 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CE------------------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCe------------------------------------------
Confidence 45899999999999999999998764211111111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
. ...+.+ ......+.+|||||..... ..+...|++.+|+++++++..+... ....
T Consensus 40 --------~--~~~~~~-~~~~~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (169)
T 3q85_A 40 --------Y--ERRIMV-DKEEVTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96 (169)
T ss_dssp --------E--EEEEEE-TTEEEEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred --------e--eEEEEE-CCeEEEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHH
Confidence 0 000111 1113467899999984311 1244556778999988776554221 1123
Q ss_pred HHHHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 196 AMKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 196 ~l~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
++...... ...+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 97 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 97 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHH
Confidence 33333333 33478999999999997543322222222223345678889998888877766554443
No 68
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.48 E-value=3.6e-14 Score=131.49 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=92.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|++|+|||||+|+|++..+.+. .+|...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~----------------------------------------- 41 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIGF----------------------------------------- 41 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSSE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc---CCcCcc-----------------------------------------
Confidence 456899999999999999999998765211 111100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.. -.+.+ ....+.||||||... ...+...|++++|++|++++..+..- -...
T Consensus 42 ---------~~--~~~~~---~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 93 (171)
T 1upt_A 42 ---------NV--ETVTY---KNLKFQVWDLGGLTS-------------IRPYWRCYYSNTDAVIYVVDSCDRDR-IGIS 93 (171)
T ss_dssp ---------EE--EEEEE---TTEEEEEEEECCCGG-------------GGGGGGGGCTTCSEEEEEEETTCCTT-HHHH
T ss_pred ---------ce--EEEEE---CCEEEEEEECCCChh-------------hhHHHHHHhccCCEEEEEEECCCHHH-HHHH
Confidence 00 00111 145689999999743 23456778999999988776554321 1222
Q ss_pred HHHHHH-hC---CCCCceEEEeccCCCCCCCC--cHHHHHh-CcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 197 MKLARE-VD---PTGERTFGVLTKLDLMDKGT--NALDVLE-GRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 l~la~~-~d---~~g~rti~VltK~Dl~~~~~--~~~~~~~-~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
...... .. ..+.|+++|+||+|+.+... ...+.+. ......+..|+.+++.++.++++.+..+..
T Consensus 94 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 94 KSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHH
Confidence 222222 22 25789999999999986532 1122111 111223346788888888877766555443
No 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.47 E-value=4.9e-14 Score=132.51 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=96.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+ +......+.... ...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~~------------------------------------ 58 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LKH------------------------------------ 58 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EEE------------------------------------
Confidence 455899999999999999999998765 322222221110 000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~ 194 (599)
+. .......+.||||||... +..+...|++++|++|++++..+.. + ...
T Consensus 59 ---------------~~-~~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 59 ---------------TE-IDNQWAILDVLDTAGQEE-------------FSAMREQYMRTGDGFLIVYSVTDKASFEHVD 109 (183)
T ss_dssp ---------------EE-ETTEEEEEEEEECCSCGG-------------GCSSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ---------------EE-eCCcEEEEEEEECCCchh-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 00 011123467899999633 2334567888999998877655431 1 012
Q ss_pred HHHHHH-HHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcC-ChhhhccCCCHHHHH
Q 007538 195 DAMKLA-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNR-SQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la-~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~-s~~~i~~~~~~~~~~ 262 (599)
.++... +.....+.++++|+||+|+.+......+.........+..|+.+++. ++.++++.+..+...
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence 333333 33455678999999999997644322222222223345789999998 887777666554443
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.47 E-value=5.4e-14 Score=131.59 Aligned_cols=161 Identities=11% Similarity=0.126 Sum_probs=89.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|||||||+|+|++..+.+......+.-.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 456999999999999999999999875221111111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
....+.+.+.....+.||||||. +....+...|++.+|++|+|++..+... ...
T Consensus 46 -----------~~~~~~~~~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 -----------LTKEVTVDGDKVATMQVWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVTNASSFENIK 101 (182)
T ss_dssp -----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEEcCCcEEEEEEEECCCC-------------hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHH
Confidence 00011111122346899999995 3345667789999999988776554321 012
Q ss_pred HHHHHHHHh----CCCCCceEEEeccCCCCCCCCc-HHHHHhCccc-ccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREV----DPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSY-RLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~----d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~-~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
.++...... ...+.|+++|+||+|+.+.... ..+....... .....|+.+++.++.++++.+..+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 233222222 2257899999999999643221 1111111111 234678999999888887766655443
No 71
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.47 E-value=1.4e-13 Score=137.01 Aligned_cols=129 Identities=18% Similarity=0.166 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccc--cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (599)
.-.+|++||.+|||||||+|+|+|..+...+... +|+.+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~----------------------------------- 64 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS----------------------------------- 64 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE-----------------------------------
Confidence 3458999999999999999999999875544332 444331111
Q ss_pred HhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
...+...++||||||+....... .+.....+......+.+.+|++++|+..........
T Consensus 65 --------------------~~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~ 123 (247)
T 3lxw_A 65 --------------------RRWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQ 123 (247)
T ss_dssp --------------------EEETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHH
T ss_pred --------------------EEECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHH
Confidence 11124568999999997533210 011122233333334589999888776543211122
Q ss_pred HHHHHHHHhCCC---CCceEEEeccCCCCC
Q 007538 195 DAMKLAREVDPT---GERTFGVLTKLDLMD 221 (599)
Q Consensus 195 ~~l~la~~~d~~---g~rti~VltK~Dl~~ 221 (599)
..++.+.+.... +.++|+|.||.|+.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 334444443221 578999999999965
No 72
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.47 E-value=1.7e-14 Score=133.20 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=89.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|||||||+|+|++..+ +.....++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~------------------------------------------ 41 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVD------------------------------------------ 41 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSS------------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEE------------------------------------------
Confidence 45899999999999999999998765 22111110000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~ 195 (599)
+. ...+.+ ......+.||||||... ...+...|++.+|+++++++..+.. +. ...
T Consensus 42 -------~~--~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (168)
T 1z2a_A 42 -------FL--ERQIQV-NDEDVRLMLWDTAGQEE-------------FDAITKAYYRGAQACVLVFSTTDRESFEAISS 98 (168)
T ss_dssp -------EE--EEEEEE-TTEEEEEEEECCTTGGG-------------TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------EE--EEEEEE-CCEEEEEEEEcCCCcHh-------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 00 001111 11134689999999633 2334667889999998877655432 11 122
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
++..+.... .+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+
T Consensus 99 ~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 99 WREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp HHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred HHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 333333222 468999999999997643211111111122334577888888777766554433
No 73
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.47 E-value=1.6e-14 Score=138.46 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=95.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|+|||||+|+|++..+. .....++.... ..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~------------------------------------- 63 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTY-SK------------------------------------- 63 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEE-EE-------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEE-EE-------------------------------------
Confidence 4568999999999999999999998762 22211111110 00
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.+ ........+.||||||.... ..+...|++.+|++|++++..+.+. ....
T Consensus 64 --------------~~-~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~ 114 (201)
T 3oes_A 64 --------------IV-TLGKDEFHLHLVDTAGQDEY-------------SILPYSFIIGVHGYVLVYSVTSLHS-FQVI 114 (201)
T ss_dssp --------------EE-C----CEEEEEEEECCCCTT-------------CCCCGGGTTTCCEEEEEEETTCHHH-HHHH
T ss_pred --------------EE-EECCEEEEEEEEECCCccch-------------HHHHHHHHhcCCEEEEEEeCCCHHH-HHHH
Confidence 00 00112345789999997432 2235668999999988876554321 1222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 197 MKLAREV----DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 197 l~la~~~----d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
..+...+ ...+.++++|+||+|+.+................+..|+.+++.++.++++.+..+.....
T Consensus 115 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 115 ESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp HHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222222 2346799999999999754432111112122334567899999999998877766555443
No 74
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.47 E-value=3.3e-14 Score=153.43 Aligned_cols=163 Identities=17% Similarity=0.295 Sum_probs=98.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
+|+|++||.+|+|||||+|+|+|..+ .++...|
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~------------------------------------------ 33 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEE------------------------------------------ 33 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCC------------------------------------------
Confidence 48999999999999999999999864 1222222
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l 197 (599)
| ++.+.+.-.+.. +...+.||||||+..... +...+.+..++..|++.+|+++++++ +...+.. ...
T Consensus 34 --g----~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V~D-~~~~~~~-~d~ 100 (439)
T 1mky_A 34 --G----VTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFVVD-GKRGITK-EDE 100 (439)
T ss_dssp ----------CCSEEEEEE-TTEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEEEE-TTTCCCH-HHH
T ss_pred --C----CccceeeEEEEE-CCeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEEEE-CCCCCCH-HHH
Confidence 0 011111111111 234689999999865321 12346678889999999999887765 4433322 222
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCC-CCcH-HHHHhCcccccCC-CeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDK-GTNA-LDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~-~~~~-~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.++..+...+.++++|+||+|+.+. .... .+ ...++. .++.+++.++.+++++++.+.....+
T Consensus 101 ~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~-----~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 101 SLADFLRKSTVDTILVANKAENLREFEREVKPE-----LYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHH-----HGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHH-----HHhcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 3344343347899999999998642 1111 12 123455 57899999999988877766555443
No 75
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.47 E-value=4.6e-14 Score=130.39 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=90.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||+|+|++..+.+.... |... ...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~-~~~-------------------------------------- 44 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQES--TIGA-AFL-------------------------------------- 44 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CSSE-EEE--------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccce-EEE--------------------------------------
Confidence 45899999999999999999998765321111 1000 000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~ 195 (599)
...+.+ ......+.||||||... ...+...|++.+|++|++++..+.. +. ...
T Consensus 45 -----------~~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1r2q_A 45 -----------TQTVCL-DDTTVKFEIWDTAGQER-------------YHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99 (170)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcHH-------------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 000011 11134688999999632 2445677899999998877655432 11 122
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..
T Consensus 100 ~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 100 WVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 333344444456789999999999754321111111111223456788888888777655443
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.47 E-value=3.7e-14 Score=136.11 Aligned_cols=159 Identities=12% Similarity=0.173 Sum_probs=91.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+.+......+.-. .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~------------------------------------- 46 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---L------------------------------------- 46 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---E-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE---E-------------------------------------
Confidence 456899999999999999999999876322221111000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
...+.+ ......+.||||||.... ..+...|++.+|++|++++..+... ...
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (207)
T 1vg8_A 47 ------------TKEVMV-DDRLVTMQIWDTAGQERF-------------QSLGVAFYRGADCCVLVFDVTAPNTFKTLD 100 (207)
T ss_dssp ------------EEEEES-SSCEEEEEEEEECSSGGG-------------SCSCCGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHhHHHHHhCCcEEEEEEECCCHHHHHHHH
Confidence 000000 111246899999996432 2334568899999888776544321 112
Q ss_pred HHHHHHHHhC----CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLAREVD----PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~~d----~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.++....... +.+.++++|+||+|+.+..........-........|+.+++.++.++++.+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 171 (207)
T 1vg8_A 101 SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171 (207)
T ss_dssp HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 2332222221 246799999999999844322211111001133457888888887777665554443
No 77
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.47 E-value=9.2e-14 Score=127.94 Aligned_cols=148 Identities=14% Similarity=0.190 Sum_probs=90.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|++|+|||||+|++++..+ +.. .+|..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~~--~~t~~--------------------------------------------- 33 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIG--------------------------------------------- 33 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SCC--CCCSS---------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Ccc--cCcCc---------------------------------------------
Confidence 799999999999999999998765 211 11111
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 199 (599)
+. ... +.. ....+.||||||.. .+..+...|++++|+++++++..+..- -......
T Consensus 34 -----~~--~~~--~~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~ 89 (164)
T 1r8s_A 34 -----FN--VET--VEY-KNISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSNDRER-VNEAREE 89 (164)
T ss_dssp -----CC--EEE--EEC-SSCEEEEEECCCCG-------------GGHHHHHHHTTTCSEEEEEEETTCGGG-HHHHHHH
T ss_pred -----ee--EEE--EEE-CCEEEEEEEcCCCh-------------hhHHHHHHHhccCCEEEEEEECCCHHH-HHHHHHH
Confidence 00 001 111 24678999999983 235677889999999988776554321 1222222
Q ss_pred HHHh----CCCCCceEEEeccCCCCCCCCcHHHHHhCc----ccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 200 AREV----DPTGERTFGVLTKLDLMDKGTNALDVLEGR----SYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 200 a~~~----d~~g~rti~VltK~Dl~~~~~~~~~~~~~~----~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
...+ ...+.++++|+||+|+.+... ..++.... ....+.+|+.+++.++.++++.+..+.
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 90 LMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHhchhhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 2222 224689999999999976432 22221111 111234577888888887776555443
No 78
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.46 E-value=2.6e-14 Score=132.66 Aligned_cols=151 Identities=21% Similarity=0.310 Sum_probs=88.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
++|+++|++|+|||||+|+|+|..+ +.+. .|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~-----~~------------------------------------------- 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGN-----WP------------------------------------------- 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccC-----CC-------------------------------------------
Confidence 5899999999999999999999764 2211 11
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~d~~~~~~ 196 (599)
|.+ +......+.+ +...+.+|||||+.+.... . ..+.+...|++ ++++++++++..+.+ ..
T Consensus 35 -~~t--~~~~~~~~~~---~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~D~~~~~----~~ 97 (165)
T 2wji_A 35 -GVT--VEKKEGEFEY---NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATALE----RN 97 (165)
T ss_dssp ---C--CCCCEEEEEE---TTEEEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEEEEETTCHH----HH
T ss_pred -Ccc--eeeeEEEEEE---CCcEEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEEEecCCchh----Hh
Confidence 000 0000111111 1346899999998663221 1 22345666765 889887776654421 12
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~---~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
..+..++...+.++++|+||+|+..... +...+. ..++..|+.+++.++.++++.+..+
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE----KILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBGGGTBSHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH----HHhCCCEEEEEcCCCCCHHHHHHHH
Confidence 2233333334789999999999864321 122221 1234678888888887776655443
No 79
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.46 E-value=6.4e-14 Score=131.15 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=65.2
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..+.+|||||+.+... ......-..+..|++.+|+++++++..+.. .....++.......+.+.|+++|+||+|
T Consensus 52 ~~~~l~Dt~G~~~~~~-----~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 52 MPLHIIDTAGLREASD-----EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp EEEEEEECCCCSCCSS-----HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred eEEEEEECCCcccchh-----HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 3578999999865211 111111122446789999998877654432 2223444455555556789999999999
Q ss_pred CCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 219 LMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 219 l~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
+.+..... .......|+.+++.++.++++++..+
T Consensus 127 l~~~~~~~-------~~~~~~~~~~~SA~~g~gv~~l~~~l 160 (172)
T 2gj8_A 127 ITGETLGM-------SEVNGHALIRLSARTGEGVDVLRNHL 160 (172)
T ss_dssp HHCCCCEE-------EEETTEEEEECCTTTCTTHHHHHHHH
T ss_pred CCcchhhh-------hhccCCceEEEeCCCCCCHHHHHHHH
Confidence 96532211 11123467888888888777655443
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.46 E-value=7.9e-14 Score=132.83 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=95.4
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...++|+|+|++|+|||||+|+|++..+....... |...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~---------------------------------------- 53 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGY---------------------------------------- 53 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSE----------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccce----------------------------------------
Confidence 36779999999999999999999998762211111 1000
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
... .+ ......+.||||||... +..+...|++++|++|+|++..+.+- ...
T Consensus 54 ----------~~~----~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~s-~~~ 104 (199)
T 4bas_A 54 ----------NVE----TF-EKGRVAFTVFDMGGAKK-------------FRGLWETYYDNIDAVIFVVDSSDHLR-LCV 104 (199)
T ss_dssp ----------EEE----EE-EETTEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEETTCGGG-HHH
T ss_pred ----------eEE----EE-EeCCEEEEEEECCCCHh-------------HHHHHHHHHhcCCEEEEEEECCcHHH-HHH
Confidence 000 01 12245689999999833 34556789999999988877655431 122
Q ss_pred HHHHHHHhCC-----------CCCceEEEeccCCCCCCCC--cHHHHHhCcc--cccCCCeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKLAREVDP-----------TGERTFGVLTKLDLMDKGT--NALDVLEGRS--YRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~la~~~d~-----------~g~rti~VltK~Dl~~~~~--~~~~~~~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.......+.. .+.++++|+||+|+.+... ...+.+.... ...+..|+.+++.++.++++.+..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 105 VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHH
Confidence 2122222211 2689999999999986532 1112111000 12345678888888888877766655
Q ss_pred HHHH
Q 007538 261 ARRK 264 (599)
Q Consensus 261 ~~~~ 264 (599)
....
T Consensus 185 ~~~~ 188 (199)
T 4bas_A 185 ETAS 188 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 81
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.45 E-value=3.9e-14 Score=135.56 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=90.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+.+......+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 62 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG-------------------------------------------- 62 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcc--------------------------------------------
Confidence 456999999999999999999998875211100000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
..+. ...+.+ ......+.||||||... ...+...|++.+|++|+|++..+... ...
T Consensus 63 ------~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 63 ------VDFQ--MKTLIV-DGERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120 (199)
T ss_dssp --------CE--EEEEEE-TTEEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ------ceeE--EEEEEE-CCEEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEECCChHHHHHHH
Confidence 0000 001111 11124589999999632 35567888999999988876544321 123
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC------CCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDK------GTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~------~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
.++..++.....+.++++|+||+|+.+. .....+.........+..|+.+++.++.++++.+..+
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 3455556665567899999999999631 1111111111112234567788888777776555443
No 82
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.45 E-value=1.5e-13 Score=129.83 Aligned_cols=160 Identities=16% Similarity=0.235 Sum_probs=91.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
+++|+|+|++|+|||||+|+|+|..+.+.....+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~------------------------------------------ 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI------------------------------------------ 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee------------------------------------------
Confidence 46899999999999999999999875221111112111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcC-CCeEE--EEEecCCccccc-
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK-PNSVI--LAISPANQDIAT- 193 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~-~~~iI--L~v~~a~~d~~~- 193 (599)
..+.+ ..+.+|||||+..... .+....+.+..+...|++. ++.++ +.|+++......
T Consensus 39 ------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 39 ------------IEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp ------------EEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred ------------EEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 11111 1789999999754321 1222346677778888765 44322 223333321100
Q ss_pred HHH---------HHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCcccccCC-------CeEEEEcCChhhhccCC
Q 007538 194 SDA---------MKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQH-------PWVGIVNRSQADINRNI 256 (599)
Q Consensus 194 ~~~---------l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~~l~~-------g~~~v~~~s~~~i~~~~ 256 (599)
..+ ..+.+.....+.|+++|+||+|+.+.... ..++. ..++. .++.+++.++.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 175 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLA----EKFEVPLSEIDKVFIPISAKFGDNIERLK 175 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHH----HHHTCCGGGHHHHEEECCTTTCTTHHHHH
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHH----HHhhhhhhccCCcEEEEecCCCCCHHHHH
Confidence 111 12333344457899999999999865311 12221 11222 35788888887777666
Q ss_pred CHHHHH
Q 007538 257 DMIVAR 262 (599)
Q Consensus 257 ~~~~~~ 262 (599)
..+...
T Consensus 176 ~~l~~~ 181 (190)
T 2cxx_A 176 NRIFEV 181 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554443
No 83
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.45 E-value=2.9e-13 Score=142.07 Aligned_cols=175 Identities=21% Similarity=0.277 Sum_probs=100.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..|.|+++|.+|||||||+|+|+|..+...+...+|+-|+.-.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~------------------------------------- 220 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYA------------------------------------- 220 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEE-------------------------------------
Confidence 5778999999999999999999998753333334443331111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--ccc-
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~- 193 (599)
+.+ + ...+.++||||+... .|.+..+.+... ..++..+|.++++++..+.. ...
T Consensus 221 ---------------i~~--~-g~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 221 ---------------IPI--N-NRKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSDALILVIDSTFSENLLIET 277 (364)
T ss_dssp ---------------EEE--T-TEEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHHHH
T ss_pred ---------------EEE--C-CEEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCCEEEEEEECCCCcchHHHH
Confidence 112 2 245789999998652 244455666554 45788999888777654432 111
Q ss_pred -HHHHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCccccc---CCCeEEEEcCChhhhccCCCHHHHHHHHHhH
Q 007538 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRL---QHPWVGIVNRSQADINRNIDMIVARRKEREY 268 (599)
Q Consensus 194 -~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~~l---~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~f 268 (599)
..+..+++.+...+.++|+|+||+|+.+.+.. ....+......+ ...++.+++.++.++++++..+.....+...
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 12345566666567899999999999865421 111110000111 1246788888888887777666655555444
Q ss_pred hcC
Q 007538 269 FAT 271 (599)
Q Consensus 269 f~~ 271 (599)
+..
T Consensus 358 ~~~ 360 (364)
T 2qtf_A 358 EHH 360 (364)
T ss_dssp ---
T ss_pred CCC
Confidence 433
No 84
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.45 E-value=1.7e-13 Score=129.71 Aligned_cols=157 Identities=14% Similarity=0.180 Sum_probs=87.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
-.+|+|+|.+|||||||+|+|++..+.+ ....++......
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~--------------------------------------- 60 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRK--------------------------------------- 60 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEE---------------------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc-ccCCccceEEEE---------------------------------------
Confidence 3589999999999999999999886522 111111111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
.+.+ ......+.||||||.. ....+...|++.+++++++++..+... ....
T Consensus 61 -------------~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 113 (190)
T 3con_A 61 -------------QVVI-DGETCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINNSKSFADINL 113 (190)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCChH-------------HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHH
Confidence 0011 1112458899999962 335567789999999988776544321 1122
Q ss_pred HHHHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 196 AMKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 196 ~l~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
++..+... ...+.++++|+||+|+.+......+ ........+..|+.+++.++.++++.+..+...
T Consensus 114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQ-AHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHH-HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHH-HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 33333333 2357899999999999864322211 111112234578888888887777666555443
No 85
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.45 E-value=4e-14 Score=132.87 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=95.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|++|+|||||+|+|++..+ +.....++..... .
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~-~------------------------------------- 45 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFT-K------------------------------------- 45 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE-E-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEE-E-------------------------------------
Confidence 356899999999999999999997665 3222222211110 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~ 194 (599)
.+.+ ......+.||||||.... ..+...|++.+++++++++..+.+.. ..
T Consensus 46 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (181)
T 3t5g_A 46 --------------LITV-NGQEYHLQLVDTAGQDEY-------------SIFPQTYSIDINGYILVYSVTSIKSFEVIK 97 (181)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCCCTT-------------CCCCGGGTTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 0001 111245789999997542 22345688899999888765543210 11
Q ss_pred HHH-HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAM-KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l-~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.++ .+.+.....+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+....
T Consensus 98 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 98 VIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 222 233344445789999999999975443222222222233456799999999999887766555443
No 86
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.45 E-value=5.5e-14 Score=129.01 Aligned_cols=155 Identities=14% Similarity=0.202 Sum_probs=92.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|+|.+|+|||||+|+|++..+.+ ....++.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~----------------------------------------- 41 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYR----------------------------------------- 41 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEE-----------------------------------------
Confidence 379999999999999999999886532 21111110000
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
..+.+ ......+.+|||||..+. ..+...|++.+++++++++..+... ....+
T Consensus 42 -----------~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 96 (166)
T 2ce2_X 42 -----------KQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96 (166)
T ss_dssp -----------EEEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00001 111245789999997431 3456678889999988776544321 01223
Q ss_pred HHHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 197 MKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 l~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
+..+... ...+.|+++|+||+|+.+....... ........+.+++.+++.++.++++.+..+..
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHH-HHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhcccCHHH-HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 3333333 3347899999999999874322111 11112234567899999888877765554443
No 87
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=4e-14 Score=131.06 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=64.7
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCC--CCCceEEEec
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDP--TGERTFGVLT 215 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~--~g~rti~Vlt 215 (599)
..+.||||||..+ ...+...|++.++++|++++..+... ....++....+... .+.|+++|+|
T Consensus 51 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 51 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp EEEEEEECCSCSS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred EEEEEEECCCchh-------------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 4588999999743 24566778889999988776554321 11233333443322 3689999999
Q ss_pred cCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHH
Q 007538 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 216 K~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
|+|+.+................+.+|+.+++.++.++++.+..+
T Consensus 118 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161 (172)
T ss_dssp CGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence 99997643321111111112234578888888887776655433
No 88
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.44 E-value=7.4e-14 Score=133.84 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=58.9
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCC---CCCceEEEe
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDP---TGERTFGVL 214 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~---~g~rti~Vl 214 (599)
..+.||||||. +....+...|++++|++|+|++..+... ....++..+....+ .+.++++|+
T Consensus 73 ~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 73 VELFLLDTAGS-------------DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp EEEEEEETTTT-------------HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred EEEEEEECCCc-------------HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 46899999998 4566788899999999988776554321 11234444455444 578999999
Q ss_pred ccCCCCC-CCCcHHHHHhCcccccCCCeEEEEcCC-hhhhccCCCHH
Q 007538 215 TKLDLMD-KGTNALDVLEGRSYRLQHPWVGIVNRS-QADINRNIDMI 259 (599)
Q Consensus 215 tK~Dl~~-~~~~~~~~~~~~~~~l~~g~~~v~~~s-~~~i~~~~~~~ 259 (599)
||+|+.+ ......+........++..|+.+++.+ +.++++.+..+
T Consensus 140 nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i 186 (208)
T 2yc2_C 140 NKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSI 186 (208)
T ss_dssp ECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHH
T ss_pred ECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHH
Confidence 9999986 322111111111122345677777777 66665544433
No 89
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.44 E-value=2e-13 Score=147.97 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=94.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..|+|++||.+|+|||||+|+|+|..+ +.+...|
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~-----~~v~~~~----------------------------------------- 55 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTP----------------------------------------- 55 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEE-----C-----------------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCC-----------------------------------------
Confidence 689999999999999999999999765 2221111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
+++.+.....+ ......++||||||+... .+...+.+..++..|++.+|++|++++ +...+ +...
T Consensus 56 -------g~t~~~~~~~~-~~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~VvD-~~~~~-~~~d 120 (456)
T 4dcu_A 56 -------GVTRDRIYSSA-EWLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMVN-GREGV-TAAD 120 (456)
T ss_dssp ------------CEEEEC-TTCSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEEE-SSSCS-CHHH
T ss_pred -------CcceeEEEEEE-EECCceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEEEe-CCCCC-ChHH
Confidence 11111222112 223468999999998632 223567888999999999998877765 44444 3444
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCC-eEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~ 259 (599)
..+++.+...+.++++|+||+|+.+..... .+.+.++++ ++.+++.++.++.++++.+
T Consensus 121 ~~l~~~l~~~~~pvilV~NK~D~~~~~~~~-----~e~~~lg~~~~~~iSA~~g~gv~~L~~~i 179 (456)
T 4dcu_A 121 EEVAKILYRTKKPVVLAVNKLDNTEMRANI-----YDFYSLGFGEPYPISGTHGLGLGDLLDAV 179 (456)
T ss_dssp HHHHHHHTTCCSCEEEEEECC--------------CCSGGGSSSSEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECccchhhhhhH-----HHHHHcCCCceEEeecccccchHHHHHHH
Confidence 557777777889999999999987543211 122334443 5678888777776555433
No 90
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.44 E-value=4.2e-13 Score=135.30 Aligned_cols=155 Identities=19% Similarity=0.267 Sum_probs=96.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccc-cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|+++|++|||||||+|+|+|..+ +.+... +|.-.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~---------------------------------------- 40 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEK---------------------------------------- 40 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEE----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEe----------------------------------------
Confidence 356899999999999999999999865 332211 11110
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCccccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIAT 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~v~~a~~d~~~ 193 (599)
.... +.. ....+.||||||+...... ... ..++..|+ .++|+++++++..+.
T Consensus 41 ------------~~~~--~~~-~~~~~~l~DtpG~~~~~~~----~~~---~~~~~~~~~~~~~d~vi~v~D~~~~---- 94 (271)
T 3k53_A 41 ------------KEGI--MEY-REKEFLVVDLPGIYSLTAH----SID---ELIARNFILDGNADVIVDIVDSTCL---- 94 (271)
T ss_dssp ------------EEEE--EEE-TTEEEEEEECCCCSCCCSS----CHH---HHHHHHHHHTTCCSEEEEEEEGGGH----
T ss_pred ------------eEEE--EEE-CCceEEEEeCCCccccccC----CHH---HHHHHHhhhccCCcEEEEEecCCcc----
Confidence 0001 111 2345899999999764322 121 23566676 689998887765542
Q ss_pred HHHHHHHHHhCCCC-CceEEEeccCCCCCCCC---cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 194 SDAMKLAREVDPTG-ERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 194 ~~~l~la~~~d~~g-~rti~VltK~Dl~~~~~---~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
...+.+..++...+ .|+++|+||+|+.+... +...+ ...++.++++++++++.++.+.+..+...
T Consensus 95 ~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 95 MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM----RKELGVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH----HHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH----HHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 23334444444445 89999999999864321 11221 23456789999999988887766655544
No 91
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.44 E-value=2.3e-13 Score=146.73 Aligned_cols=158 Identities=20% Similarity=0.275 Sum_probs=95.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.|+|++||.+|+|||||+|+|+|..+ .++...|
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~------------------------------------------ 35 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTP------------------------------------------ 35 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCC------------------------------------------
Confidence 58999999999999999999999765 1222111
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l 197 (599)
+++.+.....+ ......+.||||||+.... .+..+.+..++..|++.+|++|++++. .... +....
T Consensus 36 ------g~T~d~~~~~~-~~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~vvD~-~~~~-~~~d~ 101 (436)
T 2hjg_A 36 ------GVTRDRIYSSA-EWLNYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFMVNG-REGV-TAADE 101 (436)
T ss_dssp -----------CEEEEC-TTCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEEET-TTCS-CHHHH
T ss_pred ------CCccceEEEEE-EECCceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEEEeC-CCCC-CHHHH
Confidence 01111111111 1234679999999996421 226677888999999999998777654 3333 23334
Q ss_pred HHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHHH
Q 007538 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.+++.+...+.++++|+||+|+.+...... ....+++ .++.+++.++.+++++++.+..
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~~~~~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 161 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAE 161 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC-----CCC-----SSGGGSSCCCEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECccCccchhhHH-----HHHHcCCCCeEEEeCcCCCChHHHHHHHHH
Confidence 566667777899999999999976432211 1233444 5788999998888776665543
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.44 E-value=4.7e-13 Score=126.80 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=91.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-.+|+|+|.+|+|||||+|+|++..+. .... .|... .
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~-~t~~~---~------------------------------------- 58 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMI-PTVGF---N------------------------------------- 58 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCC-CCCSE---E-------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccC-CCCce---e-------------------------------------
Confidence 3458999999999999999999987652 1111 11000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.. .+. .....+.||||||. +.+..+...|++++|++|+|++..+.+. ....
T Consensus 59 ------------~~--~~~-~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~D~~~~~s-~~~~ 109 (188)
T 1zd9_A 59 ------------MR--KIT-KGNVTIKLWDIGGQ-------------PRFRSMWERYCRGVSAIVYMVDAADQEK-IEAS 109 (188)
T ss_dssp ------------EE--EEE-ETTEEEEEEEECCS-------------HHHHTTHHHHHTTCSEEEEEEETTCGGG-HHHH
T ss_pred ------------EE--EEE-eCCEEEEEEECCCC-------------HhHHHHHHHHHccCCEEEEEEECCCHHH-HHHH
Confidence 00 011 12456889999997 4456678889999999988776554321 1222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCCCCCCCCcHHHHHhCc----ccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREV-D---PTGERTFGVLTKLDLMDKGTNALDVLEGR----SYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~-d---~~g~rti~VltK~Dl~~~~~~~~~~~~~~----~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
......+ . ..+.++++|+||+|+.+... ..++.... .......|+.+++.++.++++++..+
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 110 KNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179 (188)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHH
Confidence 2222222 2 25789999999999986432 22221111 11223457788888877776655443
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=131.00 Aligned_cols=156 Identities=14% Similarity=0.138 Sum_probs=92.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|+|||||+|+|+|..+++.... .|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~----------------------------------------- 57 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGF----------------------------------------- 57 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-Cccce-----------------------------------------
Confidence 456999999999999999999999863232221 11110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~ 194 (599)
.. - .+.. +...+.||||||... +..+...|++++|++|+|++..+.. +.. .
T Consensus 58 ---------~~--~--~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 110 (190)
T 2h57_A 58 ---------SI--E--KFKS-SSLSFTVFDMSGQGR-------------YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK 110 (190)
T ss_dssp ---------EE--E--EEEC-SSCEEEEEEECCSTT-------------TGGGGGGGGGGCSEEEEEEETTCHHHHHHHH
T ss_pred ---------eE--E--EEEE-CCEEEEEEECCCCHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 00 0 0111 236789999999633 2345667899999998877654422 111 1
Q ss_pred HHHHHHHH-hCC--CCCceEEEeccCCCCCCCC--cHHHHHhCc-ccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLARE-VDP--TGERTFGVLTKLDLMDKGT--NALDVLEGR-SYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~-~d~--~g~rti~VltK~Dl~~~~~--~~~~~~~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
.++..... ... .+.++++|+||+|+.+... +..+.+... ....+..|+.+++.++.++++++..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 183 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD 183 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHH
Confidence 22222222 221 4789999999999976432 122222211 1123446788888888887766554443
No 94
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=1.1e-13 Score=131.28 Aligned_cols=160 Identities=15% Similarity=0.197 Sum_probs=94.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+++|||||+|+|++..+.+......+. . ..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~-~--~~------------------------------------- 53 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGV-D--FK------------------------------------- 53 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSE-E--EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccce-E--EE-------------------------------------
Confidence 3458999999999999999999998763221111110 0 00
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
...+.+ ......+.||||||... +..+...|++.+|++|++++..+... ....
T Consensus 54 ------------~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 106 (195)
T 1x3s_A 54 ------------VKTISV-DGNKAKLAIWDTAGQER-------------FRTLTPSYYRGAQGVILVYDVTRRDT-FVKL 106 (195)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECSSGG-------------GCCSHHHHHTTCCEEEEEEETTCHHH-HHTH
T ss_pred ------------EEEEEE-CCeEEEEEEEeCCCchh-------------hhhhhHHHhccCCEEEEEEECcCHHH-HHHH
Confidence 000011 11134689999999743 23346678899999988776544321 1122
Q ss_pred HHHHHHhC----CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 197 MKLAREVD----PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 197 l~la~~~d----~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
..+...+. ..+.++++|+||+|+.+......+ ........+..|+.+++.++.++++.+..+.....
T Consensus 107 ~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 107 DNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNE-GLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp HHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHH-HHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHH-HHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 22333332 246789999999999643322111 11111223456888999988888776665554433
No 95
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.43 E-value=2.5e-14 Score=133.66 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=91.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||+|+|++..+ +......+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~-------------------------------------------- 40 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIG-------------------------------------------- 40 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTT--------------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCcee--------------------------------------------
Confidence 45899999999999999999998765 211111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~ 195 (599)
..+. ...+.+.+.....+.||||||.... ..+...|++++|++|+|++..+.+. ....
T Consensus 41 -----~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (178)
T 2hxs_A 41 -----LDFF--LRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLED 100 (178)
T ss_dssp -----SSEE--EEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----EEEE--EEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 0000 0011111111256899999997431 2346678999999988776554321 1123
Q ss_pred HHHHHHHhC---CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 196 AMKLAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 196 ~l~la~~~d---~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
++..+.... +...++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+.
T Consensus 101 ~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (178)
T 2hxs_A 101 WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVA 168 (178)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 333333322 12334799999999976432111111111123346788999998888776655444
No 96
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.43 E-value=1.1e-13 Score=134.77 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=99.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
.+|+|||++++|||||++++++..| +.... ||.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~-----~Ti----------------------------------------- 46 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQ-----ATI----------------------------------------- 46 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-C-----------------------------------------------------
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC-CCCcC-----Ccc-----------------------------------------
Confidence 3899999999999999999998766 22211 100
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~ 196 (599)
+..+.. ..+. .......+.||||+|.. .+..+...|++.+++++++.+..+... ....|
T Consensus 47 ---g~d~~~--k~~~-~~~~~v~l~iwDtaGqe-------------~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~ 107 (216)
T 4dkx_A 47 ---GIDFLS--KTMY-LEDRTIRLQLWDTAGLE-------------RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 107 (216)
T ss_dssp ------CEE--EEEE-CSSCEEEEEEECCSCTT-------------TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHH
T ss_pred ---ceEEEE--EEEE-ecceEEEEEEEECCCch-------------hhhhHHHHHhccccEEEEEeecchhHHHHHHHHH
Confidence 000000 0111 11223467899999973 335678889999999988876655321 22445
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
+..++...+.+.++++|.||+|+.+......+.........+..|+.+++.++.++++.+..+.+
T Consensus 108 ~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 108 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp HHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence 55566555567899999999999765432122122223345577999999999988877655443
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.42 E-value=5.7e-13 Score=125.60 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=96.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|++++.. +.... +|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~----------------------------------------- 52 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGF----------------------------------------- 52 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSE-----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCcc-----------------------------------------
Confidence 34589999999999999999999875 21111 11110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
... .+.+ +...+.||||||. +....+...|++++|++|+|++..+..- ....
T Consensus 53 ---------~~~--~~~~---~~~~~~~~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 104 (186)
T 1ksh_A 53 ---------NIK--TLEH---RGFKLNIWDVGGQ-------------KSLRSYWRNYFESTDGLIWVVDSADRQR-MQDC 104 (186)
T ss_dssp ---------EEE--EEEE---TTEEEEEEEECCS-------------HHHHTTGGGGCTTCSEEEEEEETTCGGG-HHHH
T ss_pred ---------ceE--EEEE---CCEEEEEEECCCC-------------HhHHHHHHHHhcCCCEEEEEEECcCHHH-HHHH
Confidence 000 1111 2457899999998 3456677889999999988776554321 2222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCCCcHHHHHhCc----ccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 197 MKLAREV----DPTGERTFGVLTKLDLMDKGTNALDVLEGR----SYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 197 l~la~~~----d~~g~rti~VltK~Dl~~~~~~~~~~~~~~----~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
......+ ...+.++++|+||+|+.+... ..++.... ....+.+|+.+++.++.++++.+..+.....+
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 105 QRELQSLLVEERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhChhcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 2222222 224689999999999976532 22221111 11233467888888888887776665554443
No 98
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=2.3e-13 Score=128.63 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|||||||+|+|++..+. .. .| +
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~-----~~-------t--------------------------------- 47 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HT-----SP-------T--------------------------------- 47 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EE-----EC-------C---------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cC-----cC-------C---------------------------------
Confidence 3458999999999999999999987651 10 11 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.++... .+.+ +...+.||||||..+ ...+...|++++|++|+|++..+... -...
T Consensus 48 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 102 (187)
T 1zj6_A 48 ------IGSNVE--EIVI---NNTRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRER-ISVT 102 (187)
T ss_dssp ------SCSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTTT-HHHH
T ss_pred ------CccceE--EEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHHH-HHHH
Confidence 011111 1111 236789999999832 34456778899999988876554321 1222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCCCCCCCC--cHHHHHhCc-ccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 197 MKLAREV-D---PTGERTFGVLTKLDLMDKGT--NALDVLEGR-SYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 197 l~la~~~-d---~~g~rti~VltK~Dl~~~~~--~~~~~~~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
......+ . ..+.++++|+||+|+.+... +..+.+... ....+..|+.+++.++.++++.+..+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 103 REELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp HHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 2222222 1 35789999999999986432 122222111 122334678888888888776655444
No 99
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.42 E-value=2.5e-13 Score=150.06 Aligned_cols=167 Identities=16% Similarity=0.244 Sum_probs=98.4
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCC--cccccccccccEEEEEEecCCCCccceeeecCCCCcc-cChHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFL--PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRF-TDFSMVRKEIQ 112 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~l--P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~i~ 112 (599)
...|+|+|+|.+|+|||||+|+|+|.++. +.+..++|.+.+.+..... +... ++... .+. .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~-------~~i~--~g~~l~~~~-------~ 126 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET-------EGTV--PGNALVVDP-------E 126 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSS-------SEEE--CCC--------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCc-------cccc--CCceeeecC-------c
Confidence 36799999999999999999999999864 4666666755544432110 0000 00000 000 0
Q ss_pred HHHhhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHH--HHHHHHHhhcCCCeEEEEEecCCcc
Q 007538 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED--IESMVRSYVEKPNSVILAISPANQD 190 (599)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~--i~~~~~~yi~~~~~iIL~v~~a~~d 190 (599)
.....+...+..+....+++.+.++....++||||||+...... .+.+. +..++..|+..+|++|++++..+.+
T Consensus 127 ~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~ 202 (550)
T 2qpt_A 127 KPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLE 202 (550)
T ss_dssp -----------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCC
T ss_pred ccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC
Confidence 00011111223444555555544333357999999999752211 11111 4577888999999988877665434
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 191 ~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
. ......+++.+...+.++++|+||+|+.+..
T Consensus 203 ~-~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 203 I-SDEFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp C-CHHHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred C-CHHHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 4 3444556777777778999999999998643
No 100
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.41 E-value=2.5e-13 Score=129.80 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=67.3
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHHHHHHHHhCC-CCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAMKLAREVDP-TGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~la~~~d~-~g~rti~VltK 216 (599)
..+.+|||||.... ...+...|++.++++|+|++..+.. + ....++..++...+ .+.++++|+||
T Consensus 72 ~~l~i~Dt~g~~~~------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDA------------GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGG------------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccc------------hhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 45789999998431 0125567888999998887655432 1 12234433443333 47899999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 140 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp TTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred hhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 999764321111111111223467899999998888776655544
No 101
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.41 E-value=5e-14 Score=137.51 Aligned_cols=158 Identities=11% Similarity=0.150 Sum_probs=89.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+.+......+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 48 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV------------------------------------------- 48 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CC-------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc-------------------------------------------
Confidence 4569999999999999999999998762211111110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
.+. ...+.+ ......+.||||||..+. ..+...|++.++++|+|++..+... ...
T Consensus 49 -------~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~D~~~~~s~~~~~ 105 (223)
T 3cpj_B 49 -------EFA--TRTLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVYDISKSSSYENCN 105 (223)
T ss_dssp -------SEE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEEC-CCHHHHHHHH
T ss_pred -------eeE--EEEEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEEeCCCHHHHHHHH
Confidence 000 001111 111246899999996432 3345678999999888776544221 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+.
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 344445555556789999999999975432111111111122345677788877777665554433
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.41 E-value=5.7e-13 Score=128.76 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|++|+|||||+++|++..+ +.....++ ..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~-~~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSIT-DS----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCS-CE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcc-ee-----------------------------------------
Confidence 467999999999999999999998875 22211111 00
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHH-HHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIES-MVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~-~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
...+.+.+.....+.||||||. +.+.. +...|++.++++|+|++..+..-....
T Consensus 43 ------------~~~~~~~~~~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 43 ------------SAIYKVNNNRGNSLTLIDLPGH-------------ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKD 97 (214)
T ss_dssp ------------EEEEECSSTTCCEEEEEECCCC-------------HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHH
T ss_pred ------------eEEEEecCCCccEEEEEECCCC-------------hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHH
Confidence 0001121222456899999998 33444 788899999999888765541111112
Q ss_pred HHH----HHHH--hCCCCCceEEEeccCCCCCCC
Q 007538 196 AMK----LARE--VDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 196 ~l~----la~~--~d~~g~rti~VltK~Dl~~~~ 223 (599)
... +... ....+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 222 2221 234568999999999998654
No 103
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=3.1e-13 Score=128.87 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=94.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+.+. ...++.... .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~--~------------------------------------- 66 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTY--R------------------------------------- 66 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEE--E-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceE--E-------------------------------------
Confidence 456899999999999999999999875221 111110000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~ 194 (599)
..+.+ ......+.||||||... ..+...|++.++++|++++..+.. + ...
T Consensus 67 -------------~~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 118 (196)
T 2atv_A 67 -------------HQATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVL 118 (196)
T ss_dssp -------------EEEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHH
Confidence 00011 11134588999999843 345677888999998887655422 1 112
Q ss_pred HHHHHHHH-hCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChh-hhccCCCHHHHH
Q 007538 195 DAMKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQA-DINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~-~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~-~i~~~~~~~~~~ 262 (599)
.++..+.. ....+.|+++|+||+|+.+......+.........+.+|+.+++.++. ++++.+..+...
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHH
Confidence 23333333 334578999999999997643211111111112235678888888877 777666554443
No 104
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.40 E-value=2.4e-13 Score=147.43 Aligned_cols=167 Identities=16% Similarity=0.266 Sum_probs=100.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+++|++|+|||||+|+|+|.+.. .++..|
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~-----~~~~~~----------------------------------------- 227 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERV-----IVSNVA----------------------------------------- 227 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE-----EECC-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCcc-----ccCCCC-----------------------------------------
Confidence 5679999999999999999999998642 122222
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCcccccHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
|.+.... ...++. +...++||||||+.+....... .+....+ ...|++.+|++|++++. ...+ ...
T Consensus 228 ---gtt~~~~--~~~~~~---~~~~~~l~DT~G~~~~~~~~~~---~e~~~~~~~~~~~~~ad~~llviD~-~~~~-~~~ 294 (456)
T 4dcu_A 228 ---GTTRDAV--DTSFTY---NQQEFVIVDTAGMRKKGKVYET---TEKYSVLRALKAIDRSEVVAVVLDG-EEGI-IEQ 294 (456)
T ss_dssp -------CTT--SEEEEE---TTEEEEETTGGGTTTBTTBCCC---CSHHHHHHHHHHHHHCSEEEEEEET-TTCC-CHH
T ss_pred ---CeEEEEE--EEEEEE---CCceEEEEECCCCCcCcccchH---HHHHHHHHHHHHHhhCCEEEEEEeC-CCCc-CHH
Confidence 0000010 111111 2347899999998764322111 1223322 44688999998777654 4444 233
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcH----HHHHhCcccc-cCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNA----LDVLEGRSYR-LQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~----~~~~~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
...++..+...+.++++|+||+|+.+..... .+.+...... ...+++.+++.++.++++++..+...
T Consensus 295 ~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 295 DKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp HHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence 3455555555789999999999998755432 2222211111 13578888888888887766555443
No 105
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.40 E-value=4e-13 Score=144.82 Aligned_cols=166 Identities=16% Similarity=0.270 Sum_probs=98.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccc-cccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|++||++|+|||||+|+|+|.++...+. ..+|+-+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~---------------------------------------- 213 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA---------------------------------------- 213 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-------------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee----------------------------------------
Confidence 56799999999999999999999987521111 1111111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCcccccH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
.. ..+.. +...++||||||+.+..... +.+ +.+..+ ...|++.+|+++++++.. ... +.
T Consensus 214 ----------~~--~~~~~---~~~~~~l~DT~G~~~~~~~~--~~~-e~~~~~~~~~~~~~ad~~llv~D~~-~~~-s~ 273 (436)
T 2hjg_A 214 ----------VD--TSFTY---NQQEFVIVDTAGMRKKGKVY--ETT-EKYSVLRALKAIDRSEVVAVVLDGE-EGI-IE 273 (436)
T ss_dssp ----------CC--EEEEE---TTEEEEETTHHHHTCBTTBC--CCC-SHHHHHHHHHHHHHCSEEEEEEETT-TCC-CH
T ss_pred ----------eE--EEEEE---CCeEEEEEECCCcCcCcccc--chH-HHHHHHHHHHHHHhCCEEEEEEcCC-cCC-cH
Confidence 00 11111 12358999999986543211 111 222222 346888999887776544 333 23
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHH-HH---HhCc-ccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNAL-DV---LEGR-SYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~-~~---~~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
...+++..+...+.++++|+||+|+.+...... ++ +... ......+++.+++.++.++++.+..+...
T Consensus 274 ~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 274 QDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 334556555556899999999999987543211 11 1111 11224578889999988887766555443
No 106
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=131.93 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=70.2
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
....+|+|+|++|+|||||++++++..+ +.....++......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~------------------------------------- 59 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA------------------------------------- 59 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE-------------------------------------
Confidence 3566999999999999999999999874 33222222111000
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc-
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT- 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~- 193 (599)
.+.+ ......+.||||||..+. ..+...|++++|++|+|++..+... ..
T Consensus 60 ---------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 110 (201)
T 2q3h_A 60 ---------------VVSV-DGRPVRLQLCDTAGQDEF-------------DKLRPLCYTNTDIFLLCFSVVSPSSFQNV 110 (201)
T ss_dssp ---------------EEEE-TTEEEEEEEEECCCSTTC-------------SSSGGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred ---------------EEEE-CCEEEEEEEEECCCCHHH-------------HHHhHhhcCCCcEEEEEEECCCHHHHHHH
Confidence 0011 111235789999998442 2234568899999988876554321 11
Q ss_pred -HHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 194 -~~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
..++..++...+ +.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 111 SEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 124444444444 7899999999999753
No 107
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.40 E-value=7.8e-13 Score=124.61 Aligned_cols=151 Identities=16% Similarity=0.225 Sum_probs=92.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+++|++|||||||+++|++..+ + .. .| +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~----~~--~~-------t--------------------------------- 47 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-S----HI--TP-------T--------------------------------- 47 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-E----EE--EE-------E---------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-C----cc--cC-------c---------------------------------
Confidence 567999999999999999999999754 1 00 01 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.++... .+.+ +...+.+|||||.. .+..+...|++.+|+++++++..+..- ....
T Consensus 48 ------~g~~~~--~~~~---~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~ 102 (181)
T 1fzq_A 48 ------QGFNIK--SVQS---QGFKLNVWDIGGQR-------------KIRPYWRSYFENTDILIYVIDSADRKR-FEET 102 (181)
T ss_dssp ------TTEEEE--EEEE---TTEEEEEEECSSCG-------------GGHHHHHHHHTTCSEEEEEEETTCGGG-HHHH
T ss_pred ------CCeEEE--EEEE---CCEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECcCHHH-HHHH
Confidence 000000 1111 14568999999973 235667889999999988876554321 1222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCCCcHHHHHh--Cc--ccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 197 MKLAREV----DPTGERTFGVLTKLDLMDKGTNALDVLE--GR--SYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 197 l~la~~~----d~~g~rti~VltK~Dl~~~~~~~~~~~~--~~--~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
......+ ...+.|+++|+||+|+.+... ..++.. +. .......|+.+++.++.++++.+..+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 2222222 235689999999999986532 222211 11 112234578888888888776655443
No 108
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.39 E-value=1.6e-13 Score=130.11 Aligned_cols=156 Identities=12% Similarity=0.123 Sum_probs=89.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||+|++++..+ +.....++.....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 59 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYS---------------------------------------- 59 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE----------------------------------------
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceee----------------------------------------
Confidence 34899999999999999999998875 3222111111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~ 195 (599)
..+.+ ......+.||||||.... ..+ ..|++.++++|+|++..+.. +. ...
T Consensus 60 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~ 112 (187)
T 3c5c_A 60 ------------SEETV-DHQPVHLRVMDTADLDTP-------------RNC-ERYLNWAHAFLVVYSVDSRQSFDSSSS 112 (187)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCC---C-------------CCT-HHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCCcc-------------hhH-HHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 00011 111245789999997431 111 35889999998887655432 11 112
Q ss_pred HHHHHHHhC---CCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEc-CChhhhccCCCHHHH
Q 007538 196 AMKLAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVN-RSQADINRNIDMIVA 261 (599)
Q Consensus 196 ~l~la~~~d---~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~-~s~~~i~~~~~~~~~ 261 (599)
++..+.... ..+.++++|+||+|+.+......+........++..|+.+++ .++.++++.+..+..
T Consensus 113 ~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 113 YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence 333333321 246899999999999754321111111112234567888998 788888776655443
No 109
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.39 E-value=7.4e-15 Score=140.65 Aligned_cols=155 Identities=13% Similarity=0.178 Sum_probs=84.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+........|....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 71 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK---------------------------------------- 71 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE----------------------------------------
Confidence 4569999999999999999999998752221111111110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~ 194 (599)
...+.+ ......+.||||||.... ..+...|++++|++|+|++..+... ...
T Consensus 72 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 72 ------------IRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVK 125 (199)
T ss_dssp ------------EEEEEE-TTEEEEEEEECCTTCTTC-------------CCCSCC--CCCSEEEECC-CCCSHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHhH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 000111 111246899999996432 2234568899999888766544321 112
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
.++..+....+.+.++++|+||+|+.+...............++..|+.+++.++.++++.+.
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 344445555555789999999999975432110001111123446788888888887765543
No 110
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.39 E-value=1e-13 Score=131.20 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=91.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+.+ . .+|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~--~~t~------------------------------------------- 54 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-T--VPTV------------------------------------------- 54 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-E--CSST-------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-c--CCCC-------------------------------------------
Confidence 45689999999999999999999876511 0 0110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
++... .+.+ ....+.+|||||..+.. .+...|++++|++|+|++..+..- ....
T Consensus 55 -------~~~~~--~~~~---~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 108 (189)
T 2x77_A 55 -------GVNLE--TLQY---KNISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVDSTDRDR-MGVA 108 (189)
T ss_dssp -------TCCEE--EEEE---TTEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEETTCCTT-HHHH
T ss_pred -------ceEEE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEeCCCHHH-HHHH
Confidence 01000 1111 24578999999975422 224468889999988776554321 1222
Q ss_pred HHHHHH----hCCCCCceEEEeccCCCCCCCCcHHHHHh--C--cccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 197 MKLARE----VDPTGERTFGVLTKLDLMDKGTNALDVLE--G--RSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 197 l~la~~----~d~~g~rti~VltK~Dl~~~~~~~~~~~~--~--~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
...... ....+.|+++|+||+|+.+... ..++.. + .....+..|+.+++.++.++++.+..+....
T Consensus 109 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 109 KHELYALLDEDELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp HHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 222222 2234789999999999976532 122211 1 1122234577888888887776665554443
No 111
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.39 E-value=1.1e-13 Score=131.79 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=94.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+ +.....++......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 62 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH-------------------------------------- 62 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE--------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE--------------------------------------
Confidence 345899999999999999999999875 32221111111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc--
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~-- 193 (599)
.+.+ ......+.||||||... +..+...|++++|++|+|++..+..- ..
T Consensus 63 --------------~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 114 (194)
T 3reg_A 63 --------------VMKY-KNEEFILHLWDTAGQEE-------------YDRLRPLSYADSDVVLLCFAVNNRTSFDNIS 114 (194)
T ss_dssp --------------EEEE-TTEEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCcHH-------------HHHHhHhhccCCcEEEEEEECCCHHHHHHHH
Confidence 0001 11123578999999632 34556779999999988776554321 11
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccccCCC-eEEEEcCChhhhccCCCHHHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~ 261 (599)
..++...+... .+.++++|+||+|+.+... ...+.........+.. |+.+++.++.++++.+..+..
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHH
Confidence 23444444443 3589999999999986422 1112122122233444 889999988888766654443
No 112
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.38 E-value=1.8e-13 Score=128.54 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=89.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|.+|+|||||+++|++..+ +.....++.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 43 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYS---------------------------------------- 43 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEE----------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeE----------------------------------------
Confidence 34899999999999999999998765 2221111111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH--
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-- 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~~-- 194 (599)
..+.+ ......+.||||||... ...+...|++.+|++|+|++..+.. +...
T Consensus 44 ------------~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 44 ------------ANVMV-DGKPVNLGLWDTAGQED-------------YDRLRPLSYPQTDVSLICFSLVSPASFENVRA 97 (186)
T ss_dssp ------------EEEEE-TTEEEEEEEECCCCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCHh-------------HHHHHHHhccCCcEEEEEEECCChhhHHHHHH
Confidence 00011 11124578999999843 2344566899999998877655432 2111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHH------------HhCcccccCC-CeEEEEcCChhhhccCCCHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDV------------LEGRSYRLQH-PWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~------------~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~ 259 (599)
.++..++...+ +.++++|+||+|+.+.......+ ........+. +|+.+++.++.++++.+..+
T Consensus 98 ~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 98 KWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp THHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 24444555444 78999999999997642110000 0000112233 67777777777766554433
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.38 E-value=1.8e-13 Score=129.25 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=91.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|++|||||||+|+|+|..+.+.....+|..+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~---------------------------------------- 45 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK---------------------------------------- 45 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEE----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccce----------------------------------------
Confidence 3468999999999999999999997642211111111110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~d~~~~ 194 (599)
... +.. +...+.+|||||....... . ..+.+...|+. .+++++++++..+ + .
T Consensus 46 ------------~~~--~~~-~~~~~~l~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~d~~~--~--~ 99 (188)
T 2wjg_A 46 ------------EGE--FEY-NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATA--L--E 99 (188)
T ss_dssp ------------EEE--EEE-TTEEEEEEECCCCSCCSSS----S---HHHHHHHHHHHHHCCSEEEEEEEGGG--H--H
T ss_pred ------------EEE--EEe-CCcEEEEEECCCcCccccc----c---HHHHHHHHHHhccCCCEEEEEecchh--H--H
Confidence 001 111 1356899999998654221 1 12334555664 5888777665443 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCC---cHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~---~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
....+...+...+.++++|+||+|+..... ...++. ..++..|+.+++.++.++++.+..+..
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 165 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE----KILGVKVVPLSAAKKMGIEELKKAISI 165 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBGGGTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH----HHhCCCeEEEEecCCCCHHHHHHHHHH
Confidence 223344444446789999999999864321 222221 123467888888887777666554443
No 114
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.38 E-value=2.9e-13 Score=127.10 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=90.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|||||||+|++++..+.+.. .|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t-------------------------------------------- 49 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK---PT-------------------------------------------- 49 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC---SS--------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC---Cc--------------------------------------------
Confidence 4569999999999999999999987641000 00
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.++... .+.+ +...+.+|||||.... ..+...|++++|+++++++..+.. .....
T Consensus 50 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 104 (183)
T 1moz_A 50 ------IGFNVE--TLSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVDSTDKD-RMSTA 104 (183)
T ss_dssp ------TTCCEE--EEEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEETTCTT-THHHH
T ss_pred ------CccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 011111 1111 2367899999998442 234567889999988877654432 12222
Q ss_pred HHHHHHhC----CCCCceEEEeccCCCCCCCC--cHHHHHhCc-ccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 197 MKLAREVD----PTGERTFGVLTKLDLMDKGT--NALDVLEGR-SYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 197 l~la~~~d----~~g~rti~VltK~Dl~~~~~--~~~~~~~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
......+. ..+.|+++|+||+|+.+... +..+.+... .......|+.+++.++.++++.+..+....
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 105 SKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp HHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 23333332 35789999999999976432 122221111 111233578888888888777666555443
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.37 E-value=2.9e-13 Score=128.91 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=87.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-.+|+|+|++|+|||||+|+|++..+ +. ..+|...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~--~~~t~~~----------------------------------------- 63 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIGF----------------------------------------- 63 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EE--EEEETTE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-cc--cCCcCce-----------------------------------------
Confidence 456899999999999999999998765 21 0111110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
... . +.. ....+.||||||..+ +..+...|++++|++|+|++..+..- ....
T Consensus 64 ---------~~~--~--~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s-~~~~ 115 (192)
T 2b6h_A 64 ---------NVE--T--VEY-KNICFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRER-VQES 115 (192)
T ss_dssp ---------EEE--E--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGGG-HHHH
T ss_pred ---------eEE--E--EEE-CCEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCCHHH-HHHH
Confidence 000 0 111 245789999999832 34456778899999988776544321 2222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCCCcHHHHHh--Cc--ccccCCCeEEEEcCChhhhccCCCHH
Q 007538 197 MKLAREV----DPTGERTFGVLTKLDLMDKGTNALDVLE--GR--SYRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 197 l~la~~~----d~~g~rti~VltK~Dl~~~~~~~~~~~~--~~--~~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
......+ ...+.++++|+||+|+.+... ..++.. +. ....+.+|+.+++.++.++++.+..+
T Consensus 116 ~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 116 ADELQKMLQEDELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185 (192)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHH
Confidence 2222222 224689999999999976432 222221 11 11223457788888887776655443
No 116
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=130.36 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=75.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||+|+|++..+ +.....++.....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 72 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYM---------------------------------------- 72 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEE----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEE----------------------------------------
Confidence 34899999999999999999999865 3222111110000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--H
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~ 194 (599)
..+.+ ......+.||||||. +.+..+...|++.++++|+|++..+.. +.. .
T Consensus 73 ------------~~~~~-~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 126 (214)
T 2j1l_A 73 ------------VNLQV-KGKPVHLHIWDTAGQ-------------DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126 (214)
T ss_dssp ------------EEEEE-TTEEEEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCc-------------hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 00011 111235889999996 234556677899999998877655432 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHH-------------hCcccccCC-CeEEEEcCChhhhccCCCHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVL-------------EGRSYRLQH-PWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~-------------~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.++..++... .+.++++|+||+|+.+... ..+.+ .......+. .|+.+++.++.++++.+..+.
T Consensus 127 ~~~~~~~~~~-~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 127 RWYPEVNHFC-KKVPIIVVGCKTDLRKDKS-LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204 (214)
T ss_dssp THHHHHHHHC-SSCCEEEEEECGGGGSCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhhccch-hhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 2344444443 3689999999999986431 11111 000112233 567777777666665554443
No 117
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.37 E-value=5.7e-13 Score=127.19 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=93.4
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
....+|+|+|+.|||||||+++++|. +.+.. |.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~----~~------------------------------------------ 50 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPNE----TL------------------------------------------ 50 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGGG----GG------------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCcc----ee------------------------------------------
Confidence 35679999999999999999999986 32221 10
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHH---HHhhcCCCeEEEEEecCCccc-
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV---RSYVEKPNSVILAISPANQDI- 191 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~---~~yi~~~~~iIL~v~~a~~d~- 191 (599)
+..+....+...+.+.....+.||||||..+. ..+. ..|+++++++|+|++..+.-.
T Consensus 51 ------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 111 (196)
T 3llu_A 51 ------FLESTNKIYKDDISNSSFVNFQIWDFPGQMDF-------------FDPTFDYEMIFRGTGALIYVIDAQDDYME 111 (196)
T ss_dssp ------GCCCCCSCEEEEECCTTSCCEEEEECCSSCCT-------------TCTTCCHHHHHHTCSEEEEEEETTSCCHH
T ss_pred ------eeccccceeeeeccCCCeeEEEEEECCCCHHH-------------HhhhhhcccccccCCEEEEEEECCCchHH
Confidence 01122223333343344578999999997442 1122 578889999988876655311
Q ss_pred ccHHHHHHHHHh--CCCCCceEEEeccCCCCCCCCc------H-----HHHHhCcccccCCCeEEEEcCChhhhccCCCH
Q 007538 192 ATSDAMKLAREV--DPTGERTFGVLTKLDLMDKGTN------A-----LDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 192 ~~~~~l~la~~~--d~~g~rti~VltK~Dl~~~~~~------~-----~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 258 (599)
....+..+...+ ...+.++++|+||+|+.+.... . .++........+..|+.+++.+ .++++.+..
T Consensus 112 ~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~ 190 (196)
T 3llu_A 112 ALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSK 190 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHH
Confidence 112233334433 2347899999999999763211 0 1111111113456788999988 887765543
No 118
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=3.8e-13 Score=127.80 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+++|++..+ +.....++.....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 56 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYA--------------------------------------- 56 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEE---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeE---------------------------------------
Confidence 345899999999999999999998865 3222211111100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH-
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS- 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~~- 194 (599)
..+.+ ......+.||||||..+. ..+...|++++|++|+|++..+.. +...
T Consensus 57 -------------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (194)
T 2atx_A 57 -------------VSVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVK 109 (194)
T ss_dssp -------------EEEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHH
Confidence 00011 111246889999997442 234567899999998877655432 1111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 195 -~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
.++..++...+ +.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 110 EEWVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HTHHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 34444554443 6899999999999864
No 119
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.37 E-value=1.5e-13 Score=131.87 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=73.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
-.+|+|+|.+|+|||||+|++++..+ +.....++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------ 61 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFEN------------------------------------------ 61 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccce------------------------------------------
Confidence 45899999999999999999999875 22211111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--H
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~ 194 (599)
+. ..+.+ ......+.||||||... +..+...|++++|++|+|++..+.. +.. .
T Consensus 62 -------~~---~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 117 (201)
T 2gco_A 62 -------YI---ADIEV-DGKQVELALWDTAGQED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE 117 (201)
T ss_dssp -------CE---EEEEE-TTEEEEEEEECCCCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------EE---EEEEE-CCEEEEEEEEECCCchh-------------HHHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 00 01111 11124688999999633 2334556899999998877654422 111 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
.++..++...+ +.++++|+||+|+.+.
T Consensus 118 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 118 KWTPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp THHHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred HHHHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 34445554433 6899999999999864
No 120
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.37 E-value=4.6e-13 Score=125.97 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+|+|++..+ . .. ..|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~-~~-~~t-------------------------------------------- 52 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-V-HT-SPT-------------------------------------------- 52 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-E-EE-ECC--------------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-C-cc-CCc--------------------------------------------
Confidence 456899999999999999999999875 1 00 000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.++... .+.+ +...+.||||||..+ ...+...|++++|++|+|++..+..- ....
T Consensus 53 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~s-~~~~ 107 (181)
T 2h17_A 53 ------IGSNVE--EIVI---NNTRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRER-ISVT 107 (181)
T ss_dssp ------SSSSCE--EEEE---TTEEEEEEEESSSGG-------------GTCGGGGGGTTCCEEEEEEETTCTTT-HHHH
T ss_pred ------CceeeE--EEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCCHHH-HHHH
Confidence 011111 1112 236789999999843 23445778999999988776554321 2222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCCCCCCCC--cHHHHHhCc-ccccCCCeEEEEcCChhhhccCCC
Q 007538 197 MKLAREV-D---PTGERTFGVLTKLDLMDKGT--NALDVLEGR-SYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 197 l~la~~~-d---~~g~rti~VltK~Dl~~~~~--~~~~~~~~~-~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
......+ . ..+.++++|+||+|+.+... ...+.+... ....+..|+.+++.++.++++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHH
Confidence 2222222 2 35789999999999976432 112211111 112234578888888877765443
No 121
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.37 E-value=2.7e-13 Score=128.59 Aligned_cols=108 Identities=10% Similarity=0.068 Sum_probs=66.9
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc-c----HHHHHHHHHh--CCCCCceEE
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-T----SDAMKLAREV--DPTGERTFG 212 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~-~----~~~l~la~~~--d~~g~rti~ 212 (599)
..+.||||||... +..+...|++++|++|+|++....... . .....+..++ ...+.|+++
T Consensus 74 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 74 TRFHLYTVPGQVF-------------YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEEECCSCCS-------------CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred eEEEEEeCCChHH-------------HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 3588999999743 245667799999999887765522110 1 1122233333 335789999
Q ss_pred EeccCCCCCCCCcHHHHHhCcccccCC-CeEEEEcCChhhhccCCCHHHHH
Q 007538 213 VLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 213 VltK~Dl~~~~~~~~~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
|+||+|+.+... ..+ +.......+. .|+.+++.++.++++.+..+...
T Consensus 141 v~NK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 141 QVNKRDLPDALP-VEM-VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp EEECTTSTTCCC-HHH-HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred EEEchhcccccC-HHH-HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHH
Confidence 999999976532 111 1112223445 78888888888877766555443
No 122
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=4.1e-13 Score=127.81 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=92.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|||||||+|+|++..+.+ .. ..|... ... .
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~-~~t~~~-~~~--~---------------------------------- 47 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TY-IPTIED-TYR--Q---------------------------------- 47 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TT-SCCCCE-EEE--E----------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-cc-cCcccc-cee--E----------------------------------
Confidence 34689999999999999999999876521 11 111000 000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~ 194 (599)
.+. .......+.||||||... ...+...|++.+|++|++++..+.. + ...
T Consensus 48 --------------~~~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (199)
T 2gf0_A 48 --------------VIS-CDKSVCTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVFSVTSKQSLEELG 99 (199)
T ss_dssp --------------EEE-ETTEEEEEEEEECCGGGS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTH
T ss_pred --------------EEE-ECCEEEEEEEEeCCChHH-------------hHHHHHHhhccCCEEEEEEECcCHHHHHHHH
Confidence 000 111124588999999632 2456777888999998877655421 1 112
Q ss_pred HHHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 195 DAMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 195 ~~l~la~~~d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.++..+..+.. .+.++++|+||+|+.+....... ........+..|+.+++.++.++++++..+.
T Consensus 100 ~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (199)
T 2gf0_A 100 PIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTRE-AQAVAQEWKCAFMETSAKMNYNVKELFQELL 166 (199)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHH-HHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHH-HHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Confidence 23333444332 36799999999999864322211 1111223446788899988887776554443
No 123
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.36 E-value=9.6e-14 Score=144.35 Aligned_cols=163 Identities=19% Similarity=0.181 Sum_probs=97.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
+|.|++||.+|||||||+|+|++......+...+|..|..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--------------------------------------- 198 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--------------------------------------- 198 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE---------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE---------------------------------------
Confidence 68999999999999999999998764222333344444110
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---ccc-cc
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---QDI-AT 193 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~---~d~-~~ 193 (599)
.+..++...++||||||+...+..+ ..+.....++++.++++|++++.++ .+. ..
T Consensus 199 ---------------~v~~~~~~~~~l~DtPG~i~~a~~~------~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 199 ---------------MVETDDGRSFVMADLPGLIEGAHQG------VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDD 257 (342)
T ss_dssp ---------------EEECSSSCEEEEEEHHHHHHHTTCT------TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHH
T ss_pred ---------------EEEeCCCceEEEecCCCCccccccc------chhHHHHHHHHHhccEEEEEEECCcccccChHHH
Confidence 0122223578999999986533221 1111223445667999988877654 221 11
Q ss_pred -HHHHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 194 -SDAMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 194 -~~~l~la~~~d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
..+...+..+.+ ...|.++|+||+|+.+......++... ......++.+++.+..++++++..+...
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~--l~~~~~v~~iSA~tg~gi~eL~~~l~~~ 327 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEK--LTDDYPVFPISAVTREGLRELLFEVANQ 327 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHH--CCSCCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHH--hhcCCCEEEEECCCCcCHHHHHHHHHHH
Confidence 223334444543 468999999999998643222222111 1111568888988888877666555443
No 124
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.36 E-value=7.8e-13 Score=141.14 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=97.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|+|+|..|+|||||+|+|+|.++.+.+.. .+|.-
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d----------------------------------------- 71 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTD----------------------------------------- 71 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CC-----------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeee-----------------------------------------
Confidence 567999999999999999999999876222111 11111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~ 195 (599)
.....+.......+.||||||+.+...-++ .....+..|+..+|++|++++. ...-....
T Consensus 72 -------------~~~~~~~~~~~~~l~liDTpG~~d~~~l~~------~~~~~~~~~l~~aD~vllVvD~-~~~~~~~~ 131 (423)
T 3qq5_A 72 -------------PVYKSMELHPIGPVTLVDTPGLDDVGELGR------LRVEKARRVFYRADCGILVTDS-APTPYEDD 131 (423)
T ss_dssp -------------CCEEEEEETTTEEEEEEECSSTTCCCTTCC------CCHHHHHHHHTSCSEEEEECSS-SCCHHHHH
T ss_pred -------------eEEEEEEECCCCeEEEEECcCCCcccchhH------HHHHHHHHHHhcCCEEEEEEeC-CChHHHHH
Confidence 111112222223789999999976432211 1122356788899998887754 32222334
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
++..+++ .+.++++|+||+|+.+.... +........++..++.+++.++.++++.+..+....
T Consensus 132 ~l~~l~~---~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 132 VVNLFKE---MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp HHHHHHH---TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHHHh---cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4444444 47899999999999876543 222222334567889999999988887776665543
No 125
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.36 E-value=4.2e-13 Score=130.21 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=95.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+++|++..+ +.....++.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 65 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYT--------------------------------------- 65 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEE---------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEE---------------------------------------
Confidence 456899999999999999999998875 2221111100000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c--c
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A--T 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~--~ 193 (599)
..+.+ ......+.||||||... +..+...|+++++++|+|++..+... . .
T Consensus 66 -------------~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 118 (214)
T 3q3j_B 66 -------------ACLET-EEQRVELSLWDTSGSPY-------------YDNVRPLCYSDSDAVLLCFDISRPETVDSAL 118 (214)
T ss_dssp -------------EEEEC---CEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCTHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCHh-------------HHHHHHHHcCCCeEEEEEEECcCHHHHHHHH
Confidence 00011 11124688999999733 23456678999999988887655321 1 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCC------------CcHHHHHhCcccccCC-CeEEEEcCChhh-hccCCCHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG------------TNALDVLEGRSYRLQH-PWVGIVNRSQAD-INRNIDMI 259 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~------------~~~~~~~~~~~~~l~~-g~~~v~~~s~~~-i~~~~~~~ 259 (599)
..++..++...+ +.++++|+||+|+.+.. ....+.........+. .|+.+++.++.+ +++.+..+
T Consensus 119 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 119 KKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp THHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 345555555543 68999999999997531 1111111111223445 678888888887 77766555
Q ss_pred HHH
Q 007538 260 VAR 262 (599)
Q Consensus 260 ~~~ 262 (599)
...
T Consensus 198 ~~~ 200 (214)
T 3q3j_B 198 SML 200 (214)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.36 E-value=2.6e-12 Score=134.79 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=91.8
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...++|+|+|.+|||||||+|+|+|..+...+...+|+.+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~------------------------------------- 207 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG------------------------------------- 207 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE-------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEE-------------------------------------
Confidence 3678999999999999999999999863111112222222100
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc---ccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIA 192 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~---d~~ 192 (599)
.+.. ....+.+|||||+....... .. ......+..+...+|+++++++..+. ++.
T Consensus 208 -----------------~~~~-~~~~~~l~Dt~G~~~~~~~~-~~---~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~ 265 (357)
T 2e87_A 208 -----------------QFED-GYFRYQIIDTPGLLDRPISE-RN---EIEKQAILALRYLGNLIIYIFDPSEHCGFPLE 265 (357)
T ss_dssp -----------------EEEE-TTEEEEEEECTTTSSSCSTT-SC---HHHHHHHHGGGGTCSEEEEEECTTCTTSSCHH
T ss_pred -----------------EEEe-cCceEEEEeCCCccccchhh-hh---HHHHHHHHHHHhcCCEEEEEEeCCccccCCHH
Confidence 0111 13468999999997643221 11 11123344566678988777764432 222
Q ss_pred c-HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHH
Q 007538 193 T-SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 193 ~-~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
. ..++..+....+ +.++++|+||+|+.+... ..+. .......+.+++.+++.++.++++++..+.
T Consensus 266 ~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~-~~~~-~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~ 331 (357)
T 2e87_A 266 EQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN-IKRL-EKFVKEKGLNPIKISALKGTGIDLVKEEII 331 (357)
T ss_dssp HHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH-HHHH-HHHHHHTTCCCEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEECcccCChHH-HHHH-HHHHHhcCCCeEEEeCCCCcCHHHHHHHHH
Confidence 2 233333443333 789999999999976432 1111 111112345677777777766655554433
No 127
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1.5e-13 Score=132.47 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=71.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
-++|+|+|.+|+|||||+|+|++..+ +.....++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------ 61 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFEN------------------------------------------ 61 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-C-------CCE------------------------------------------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccce------------------------------------------
Confidence 34899999999999999999999875 22111111000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--H
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~ 194 (599)
+ ...+.+ ......+.||||||.... ..+...|++++|++|+|++..+.. +.. .
T Consensus 62 -------~---~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 117 (207)
T 2fv8_A 62 -------Y---VADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117 (207)
T ss_dssp -------E---EEEEEE-TTEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHH
T ss_pred -------E---EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 0 000111 111246889999997432 234556899999998877655432 111 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
.++..++...+ +.++++|+||+|+.+.
T Consensus 118 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 118 KWVPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp THHHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred HHHHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 33444444433 6899999999999764
No 128
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.35 E-value=9.7e-14 Score=130.09 Aligned_cols=118 Identities=24% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||++++++..+ +.....++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~----------------------------------------- 44 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDN----------------------------------------- 44 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeee-----------------------------------------
Confidence 356899999999999999999998764 22211111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc--
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~-- 193 (599)
+.. .+. + ......+.||||||..+. ..+...|++++|++|++++..+... ..
T Consensus 45 --------~~~-~~~--~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (182)
T 3bwd_D 45 --------FSA-NVV--V-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVS 99 (182)
T ss_dssp --------CBC-CCC----------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------EEE-EEE--E-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 000 000 1 112356789999997432 3445678999999988776554321 11
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
..++..++...+ +.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 100 KKWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 124444555444 6899999999999754
No 129
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.34 E-value=6e-13 Score=125.54 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+ +.... +|... ...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~-~t~~~---~~~----------------------------------- 45 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE---NYT----------------------------------- 45 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEE---EEE-----------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-Cccce---eEE-----------------------------------
Confidence 345899999999999999999999865 32211 11111 000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc--
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~-- 193 (599)
..+.+ ......+.||||||... ...+...|++.++++|++++..+... ..
T Consensus 46 -------------~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 98 (184)
T 1m7b_A 46 -------------ASFEI-DTQRIELSLWDTSGSPY-------------YDNVRPLSYPDSDAVLICFDISRPETLDSVL 98 (184)
T ss_dssp -------------EEEEC-SSCEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCChh-------------hhhhHHhhcCCCcEEEEEEECCCHHHHHHHH
Confidence 00001 11124588999999733 23345568899999988776554321 11
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMD 221 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~ 221 (599)
..++..++...+ +.|+++|+||+|+.+
T Consensus 99 ~~~~~~i~~~~~-~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 99 KKWKGEIQEFCP-NTKMLLVGCKSDLRT 125 (184)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHCC-CCCEEEEEEcchhhc
Confidence 223344444433 689999999999975
No 130
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.33 E-value=1.3e-12 Score=125.18 Aligned_cols=149 Identities=11% Similarity=0.135 Sum_probs=85.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+++|++|||||||+++|++..+ +. -.+|..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~~----------------------------------------- 59 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLHP----------------------------------------- 59 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCCc-----------------------------------------
Confidence 445899999999999999999998765 10 0011000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
. .-.+.+ . ...+.+|||||... .+.+...|++.++++|++++..+..- -...
T Consensus 60 ---------~--~~~~~~--~-~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~s-~~~~ 111 (198)
T 1f6b_A 60 ---------T--SEELTI--A-GMTFTTFDLGGHIQ-------------ARRVWKNYLPAINGIVFLVDCADHER-LLES 111 (198)
T ss_dssp ---------S--CEEEEE--T-TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGGG-HHHH
T ss_pred ---------e--eEEEEE--C-CEEEEEEECCCcHh-------------hHHHHHHHHhcCCEEEEEEECCCHHH-HHHH
Confidence 0 011112 1 25789999999732 23456678999999988876654321 1222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCCC--cHHHHHhCcc---------c----ccCCCeEEEEcCChhhhccCCC
Q 007538 197 MKLAREV----DPTGERTFGVLTKLDLMDKGT--NALDVLEGRS---------Y----RLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 197 l~la~~~----d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~---------~----~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
......+ ...+.|+++|+||+|+.+.-. +..+.+.... . .....|+.+++.++.++++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 191 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 191 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHH
Confidence 2222222 235789999999999975321 1222222110 0 1223577888888877765544
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.33 E-value=1.8e-13 Score=132.13 Aligned_cols=117 Identities=22% Similarity=0.241 Sum_probs=73.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||++++++..+ +.....++.....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 47 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS---------------------------------------- 47 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEE----------------------------------------
Confidence 45899999999999999999998765 3222111111100
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--H
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~--~ 194 (599)
..+.+ ......+.||||||.... ..+...|++++|++|++++..+.. +.. .
T Consensus 48 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 101 (212)
T 2j0v_A 48 ------------ANVAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISKASYENVLK 101 (212)
T ss_dssp ------------EEEEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 00111 111246889999998442 234556899999998887655432 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 102 KWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 34445555544 6899999999999754
No 132
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=132.91 Aligned_cols=155 Identities=18% Similarity=0.151 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||+++|++..+ +.....++...
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 66 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDN----------------------------------------- 66 (204)
Confidence 446899999999999999999998765 21111111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-- 193 (599)
+ . ..+.+ ......+.||||||.. ....+...|++++|++|+|++..+.. +..
T Consensus 67 --------~-~--~~~~~-~~~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 121 (204)
T 3th5_A 67 --------Y-S--ANVMV-DGKPVNLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICFSLVSPASFENVR 121 (204)
Confidence 0 0 00001 1123467799999973 33566777899999998877654422 111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHH------------HHHhCcccccCC-CeEEEEcCChhhhccCCCHH
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNAL------------DVLEGRSYRLQH-PWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~------------~~~~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~ 259 (599)
..++..++...+ +.++++|+||+|+.+...... +.........+. +|+.+++.++.++++.+..+
T Consensus 122 ~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 122 AKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 123333333222 689999999999976432100 001111112233 67778888887777666543
No 133
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.33 E-value=1.6e-12 Score=121.45 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=87.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|+|++|+|||||++++++..+.+ . ..|-....
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~-~~t~~~~~---------------------------------------- 43 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--L-EKTESEQY---------------------------------------- 43 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--C-SSCSSSEE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--c-CCCcceeE----------------------------------------
Confidence 3489999999999999999999987632 1 11100000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSD 195 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~ 195 (599)
...+.+ ......+.||||||..+ ..|++++|++|+|++..+..- . ...
T Consensus 44 -----------~~~~~~-~~~~~~l~i~Dt~G~~~------------------~~~~~~~d~~ilv~D~~~~~s~~~~~~ 93 (178)
T 2iwr_A 44 -----------KKEMLV-DGQTHLVLIREEAGAPD------------------AKFSGWADAVIFVFSLEDENSFQAVSR 93 (178)
T ss_dssp -----------EEEEEE-TTEEEEEEEEECSSSCC------------------HHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCCch------------------hHHHHhCCEEEEEEECcCHHHHHHHHH
Confidence 000111 11124578999999732 357888999988876554321 0 112
Q ss_pred HHHHHHHhC---CCCCceEEEeccCCCCCCCC--cHHHHHhCccccc-CCCeEEEEcCChhhhccCCCHHHH
Q 007538 196 AMKLAREVD---PTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRL-QHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 196 ~l~la~~~d---~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
++..+..+. ..+.|+++|+||+|+.+... ...+......... +..|+.+++.++.++++.+..+..
T Consensus 94 ~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 94 LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHH
Confidence 222333332 24689999999999953211 1111111111111 356888888888887766655443
No 134
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.33 E-value=1.7e-12 Score=123.35 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=87.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|||||||++++++..+-. -.+|..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~---~~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT---LQPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc---cccCCCCC----------------------------------------
Confidence 44589999999999999999999876511 01111110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.-.+.+ . ...+.+|||||.... +.+...|++.+|++|++++..+..- -...
T Consensus 59 ------------~~~~~~--~-~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~ 109 (190)
T 1m2o_B 59 ------------SEELAI--G-NIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPER-FDEA 109 (190)
T ss_dssp ------------EEEEEE--T-TEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGGG-HHHH
T ss_pred ------------eEEEEE--C-CEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChHH-HHHH
Confidence 001111 1 256899999998432 3345678899999988876654321 1222
Q ss_pred HHHHHHh----CCCCCceEEEeccCCCCCCCC--cHHHHHhCcc--------cccCCCeEEEEcCChhhhccCCC
Q 007538 197 MKLAREV----DPTGERTFGVLTKLDLMDKGT--NALDVLEGRS--------YRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 197 l~la~~~----d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~--------~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
......+ ...+.|+++|+||+|+.+... +..+.+.... ......|+.+++.++.++++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 184 (190)
T 1m2o_B 110 RVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 184 (190)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHH
Confidence 2222222 235789999999999976322 1222221110 01223577888888777765443
No 135
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=2.2e-12 Score=125.05 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=66.2
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHHHHHHHh-CCCCCceEEEecc
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREV-DPTGERTFGVLTK 216 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~la~~~-d~~g~rti~VltK 216 (599)
..+.+|||+|... ....+...|.+.++++|+|++..+.. +. ...+...+... ...+.|+|+|.||
T Consensus 87 ~~l~~~Dt~g~~~------------~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK 154 (211)
T 2g3y_A 87 ATIILLDMWENKG------------ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154 (211)
T ss_dssp EEEEEECCTTTTH------------HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEEC
T ss_pred eEEEEeecCCCcc------------hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 3568999999622 12345667888999998887654432 11 11233223322 2346899999999
Q ss_pred CCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 217 ~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 155 ~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9997533211111111112234568889999988888777655543
No 136
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.31 E-value=1.1e-12 Score=126.36 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|+|||||+|+|++..+ +.... .|... ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~-~t~~~---~~~----------------------------------- 66 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE---NYT----------------------------------- 66 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEE---EEE-----------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-Cccce---eEE-----------------------------------
Confidence 456899999999999999999999875 32211 11111 000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc--
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~-- 193 (599)
..+.+ ......+.||||||... +..+...|+++++++|+|++..+... ..
T Consensus 67 -------------~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~ 119 (205)
T 1gwn_A 67 -------------ASFEI-DTQRIELSLWDTSGSPY-------------YDNVRPLSYPDSDAVLICFDISRPETLDSVL 119 (205)
T ss_dssp -------------EEEES-SSSEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEeCCCcHh-------------hhHHHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 00001 11124588999999733 13345568899999988876554321 11
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMD 221 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~ 221 (599)
..++..++...+ +.++++|+||+|+.+
T Consensus 120 ~~~~~~i~~~~~-~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 120 KKWKGEIQEFCP-NTKMLLVGCKSDLRT 146 (205)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHCC-CCCEEEEEechhhcc
Confidence 233344444433 689999999999975
No 137
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.31 E-value=5.6e-13 Score=129.65 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=68.2
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..+.||||||.... ..+...|+++++++|+|++..+... ....++..+.... .+.++++|+||+
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 129 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECT
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECC
Confidence 46889999996332 2345568889999988776554321 1123444444443 368999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
|+.+..... .........+..|+.+++.++.++++.+..+....
T Consensus 130 Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 130 DIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp TSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred ccccccccH--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 997644321 11111223456789999998888877766555443
No 138
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.31 E-value=6.8e-12 Score=126.34 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=75.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCccccc-ccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--------------------------------------- 78 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV--------------------------------------- 78 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE---------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE---------------------------------------
Confidence 456999999999999999999999876433321 2222221
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCccccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIAT 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~v~~a~~d~~~ 193 (599)
...+. .....++||||||+.+... ....+...+..|+ ..+|++++|+......+..
T Consensus 79 ---------------~~~~~-~~~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~ 136 (270)
T 1h65_A 79 ---------------MVSRS-RAGFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDN 136 (270)
T ss_dssp ---------------EEEEE-ETTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCH
T ss_pred ---------------EEEEe-eCCeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCH
Confidence 11111 1245699999999965321 1123334445554 3688888775443323322
Q ss_pred --HHHHHHHHHhCCCC--CceEEEeccCCCCCCC
Q 007538 194 --SDAMKLAREVDPTG--ERTFGVLTKLDLMDKG 223 (599)
Q Consensus 194 --~~~l~la~~~d~~g--~rti~VltK~Dl~~~~ 223 (599)
..+++.+....... .++++|+||+|+.+..
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 137 LDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 23344443332222 5899999999997643
No 139
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.30 E-value=3e-13 Score=130.10 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||++++++..+ +.....++......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 69 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSA-------------------------------------- 69 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEE--------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEE--------------------------------------
Confidence 445899999999999999999998765 22211111111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--- 193 (599)
.+.+ ......+.||||||... +..+...|++.+|++|+|++..+.....
T Consensus 70 --------------~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 121 (204)
T 4gzl_A 70 --------------NVMV-DGKPVNLGLWDTAGLED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVR 121 (204)
T ss_dssp --------------EEEC-C-CEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 0000 11123467999999833 2345667899999998877655432111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
..++..++... .+.++++|+||+|+.+..
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 12344444443 468999999999998643
No 140
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.30 E-value=2.4e-12 Score=121.70 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=90.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|++|||||||+|++++..| +.... .|.. .+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~-~t~~----~~~----------------------------------- 57 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEES-PEGG----RFK----------------------------------- 57 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCC-TTCE----EEE-----------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CCcc----eEE-----------------------------------
Confidence 345899999999999999999998876 22111 1100 000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~ 194 (599)
..+.+. .....+.||||||... . . |++.++++++|++..+.. +.. .
T Consensus 58 -------------~~~~~~-~~~~~l~i~Dt~G~~~---------~----~-----~~~~~~~~i~v~d~~~~~s~~~~~ 105 (184)
T 3ihw_A 58 -------------KEIVVD-GQSYLLLIRDEGGPPE---------L----Q-----FAAWVDAVVFVFSLEDEISFQTVY 105 (184)
T ss_dssp -------------EEEEET-TEEEEEEEEECSSSCC---------H----H-----HHHHCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEEC-CEEEEEEEEECCCChh---------h----h-----eecCCCEEEEEEECcCHHHHHHHH
Confidence 001111 1123578899999733 1 1 778899998887655432 111 2
Q ss_pred HHHHHHHHhC-CCCCceEEEeccCCCCCCCCc--HHHHHhCcccccC-CCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVD-PTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d-~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.++..+.... ..+.++++|.||+|+.+.... ..+.........+ ..|+.+++.++.++++.+..+....
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 106 NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 2333333332 246799999999999632211 1111111122233 6789999999988887766555443
No 141
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.30 E-value=7e-12 Score=118.78 Aligned_cols=119 Identities=19% Similarity=0.341 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|+|+|.+|||||||+|+|+|..+.+ ..++..|
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~----------------------------------------- 82 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEP----------------------------------------- 82 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCC-----------------------------------------
Confidence 57899999999999999999999987522 1111111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC-Ccc-ccc-
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA-NQD-IAT- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a-~~d-~~~- 193 (599)
+.+.. .....+.||||||...... .+.......+..++++|+|++.. +.. +..
T Consensus 83 ---~~~~~------------~~~~~~~l~Dt~G~~~~~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 138 (193)
T 2ged_A 83 ---LSAAD------------YDGSGVTLVDFPGHVKLRY---------KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT 138 (193)
T ss_dssp -------C------------CCCTTCSEEEETTCCBSSC---------CHHHHHHHHGGGEEEEEEEEETTCCHHHHHHH
T ss_pred ---ceeee------------ecCCeEEEEECCCCchHHH---------HHHHHHHhhcccCCEEEEEEECCCCchhHHHH
Confidence 00000 0346789999999865321 12333344455689888877655 221 100
Q ss_pred HHHH-HHHHHh---CCCCCceEEEeccCCCCCCC
Q 007538 194 SDAM-KLAREV---DPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 194 ~~~l-~la~~~---d~~g~rti~VltK~Dl~~~~ 223 (599)
..++ .+.... .+.+.++++|+||+|+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 139 AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 1121 111111 34578999999999998654
No 142
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.28 E-value=2.3e-11 Score=121.87 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccc-cccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
.-.+|+|+|.+|+|||||+|+|+|..+...+. ..+|..+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 77 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMV------------------------------------- 77 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEE-------------------------------------
Confidence 45689999999999999999999987522221 1122222111
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCccccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIAT 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~v~~a~~d~~~ 193 (599)
.+. .+...++||||||+.+... ..+.....+..++. .++++++|+......+..
T Consensus 78 -----------------~~~-~~~~~l~liDTpG~~~~~~------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~ 133 (262)
T 3def_A 78 -----------------SRT-MGGFTINIIDTPGLVEAGY------VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDE 133 (262)
T ss_dssp -----------------EEE-ETTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCH
T ss_pred -----------------EEE-ECCeeEEEEECCCCCCccc------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCH
Confidence 111 1234789999999966432 12344444555554 467776664333323322
Q ss_pred --HHHHHHHHHhCCCC--CceEEEeccCCCCCC
Q 007538 194 --SDAMKLAREVDPTG--ERTFGVLTKLDLMDK 222 (599)
Q Consensus 194 --~~~l~la~~~d~~g--~rti~VltK~Dl~~~ 222 (599)
..+++.++.....+ .++++|+||+|+.+.
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 23455555443222 489999999999754
No 143
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.28 E-value=3.8e-12 Score=131.95 Aligned_cols=151 Identities=16% Similarity=0.188 Sum_probs=89.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhhc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (599)
+|+|+|.+|+|||||+++|++..+ +.. .+|.....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~~------------------------------------------ 201 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNV------------------------------------------ 201 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEEE------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceEE------------------------------------------
Confidence 899999999999999999999875 111 11211100
Q ss_pred CCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH---H
Q 007538 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---A 196 (599)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~---~ 196 (599)
. .+.. ....++||||||. +.+..+...|++.+|++|+|++..+.+.-... .
T Consensus 202 ----------~--~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 202 ----------E--TVEY-KNISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp ----------E--EEEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred ----------E--EEec-CcEEEEEEECCCC-------------HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 0 0111 2356899999995 33445677889999999888765543221111 1
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhC-cccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEG-RSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~-~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
..+.+.....+.++++|+||+|+.+.... ..+.+.. ........|+.+++.++.++++++..+..
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence 12222222247899999999999865421 1121111 11223345788888888888776655443
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.27 E-value=4.8e-12 Score=129.95 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=47.9
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHHHHHHHHHhC--CCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVD--PTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~-~~~~l~la~~~d--~~g~rti~Vl 214 (599)
...+.||||||..+. .......+...|+++++++|+|++..+... . ...+......+. ..+.|+++|+
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 467899999997321 111224677889999999988877655321 1 112222232221 2368999999
Q ss_pred ccCCCCC
Q 007538 215 TKLDLMD 221 (599)
Q Consensus 215 tK~Dl~~ 221 (599)
||+|+.+
T Consensus 123 NK~Dl~~ 129 (307)
T 3r7w_A 123 HKMDLVQ 129 (307)
T ss_dssp ECGGGSC
T ss_pred ecccccc
Confidence 9999986
No 145
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.27 E-value=7.4e-12 Score=138.42 Aligned_cols=110 Identities=8% Similarity=0.082 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...+.+|||||.... ..+...|+++++++|+|++.++ .-....++..++...+ +.++|+|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~ii~V~D~s~-~~~~~~~~~~l~~~~~-~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSSVYMLLLDSRT-DSNKHYWLRHIEKYGG-KSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSEEEEEEECGGG-GGGHHHHHHHHHHHSS-SCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCcEEEEEEeCCC-chhHHHHHHHHHHhCC-CCCEEEEEECCC
Confidence 456899999995321 2234467888998877775543 3334556666666654 589999999999
Q ss_pred CCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 219 LMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 219 l~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
+.+......+.+.......+..++.+++.++.++++++..+....
T Consensus 162 l~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp TCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 986544222323333344556799999999999887766555443
No 146
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.26 E-value=2.4e-12 Score=132.87 Aligned_cols=118 Identities=23% Similarity=0.219 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|.+|+|||||++++++..+ +.....+|.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEE-------------------------------------
Confidence 456899999999999999999998765 222222221110000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-cc--
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~-- 193 (599)
+.+ ......+.||||||... ...+...|++.+|++|+|++..+... ..
T Consensus 196 ---------------~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 196 ---------------VMV-DGKPVNLGLWDTAGLED-------------YDRLRPLSYPQTDVFLICFSLVSPASFHHVR 246 (332)
T ss_dssp ---------------EEE-TTEEEEEEEEEECCCGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCchh-------------hhHHHHHhccCCCEEEEEEeCCCHHHHHHHH
Confidence 001 11123467999999743 23456678999999988776554321 11
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
..++..++...+ +.|+++|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 123344454444 7899999999999754
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.25 E-value=3e-11 Score=130.19 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=92.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcc-cccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPR-GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~-~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
..++|++||++|||||||+|+|+|..+... ....+|+-|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~--------------------------------------- 219 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV--------------------------------------- 219 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------C---------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCce---------------------------------------
Confidence 467999999999999999999999864111 1111222110
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHH-HHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIE-SMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~-~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
...+.+ ++..+.+|||||+.+..... ++.. +.+. ..+..+++.+++++++++.. ... +.
T Consensus 220 -------------~~~i~~---~g~~~~l~Dt~G~~~~~~~~-~~~~-e~~~~~~~~~~i~~ad~vllv~d~~-~~~-~~ 279 (439)
T 1mky_A 220 -------------DDEVFI---DGRKYVFVDTAGLRRKSRVE-PRTV-EKYSNYRVVDSIEKADVVVIVLDAT-QGI-TR 279 (439)
T ss_dssp -------------CEEEEE---TTEEEEESSCSCC-------------CCSCCHHHHHHHHHCSEEEEEEETT-TCC-CH
T ss_pred -------------EEEEEE---CCEEEEEEECCCCccccccc-hhhH-HHHHHHHHHHHHhhCCEEEEEEeCC-CCC-CH
Confidence 001112 13468899999985422110 0000 0000 12346788899887766543 333 22
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHH---HHhCccc-ccCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALD---VLEGRSY-RLQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~---~~~~~~~-~l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
....++..+...+.++++|+||+|+.+.... ..+ .+..... ....+++.+++.++.++++++..+...
T Consensus 280 ~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 280 QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 2334555555568999999999999864321 111 1111111 123467888888888887766655443
No 148
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.24 E-value=5.7e-12 Score=122.02 Aligned_cols=117 Identities=21% Similarity=0.386 Sum_probs=72.5
Q ss_pred cCCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...|+|+|+|++|+|||||+|+|++..+.+. ..+..|+.-
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~------------------------------------- 49 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSA------------------------------------- 49 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEE-------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEE-------------------------------------
Confidence 3678999999999999999999999875221 111122100
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcC----CCeEEEEEecC-Ccc
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK----PNSVILAISPA-NQD 190 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~----~~~iIL~v~~a-~~d 190 (599)
..+ ....+.||||||... ++.++..|++. ++++|++++.. +.+
T Consensus 50 -------~~~------------~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~ 97 (218)
T 1nrj_B 50 -------ADY------------DGSGVTLVDFPGHVK-------------LRYKLSDYLKTRAKFVKGLIFMVDSTVDPK 97 (218)
T ss_dssp -------TTG------------GGSSCEEEECCCCGG-------------GTHHHHHHHHHHGGGEEEEEEEEETTSCTT
T ss_pred -------EEe------------eCceEEEEECCCcHH-------------HHHHHHHHHHhccccCCEEEEEEECCCChH
Confidence 000 245789999999843 23344555554 89888877665 221
Q ss_pred -cc-cHHHHH-HHHHh---CCCCCceEEEeccCCCCCCCC
Q 007538 191 -IA-TSDAMK-LAREV---DPTGERTFGVLTKLDLMDKGT 224 (599)
Q Consensus 191 -~~-~~~~l~-la~~~---d~~g~rti~VltK~Dl~~~~~ 224 (599)
+. ...++. +.... .+.+.|+++|+||+|+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 98 KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 21 112221 11111 446789999999999987553
No 149
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.23 E-value=8.9e-12 Score=118.68 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=62.0
Q ss_pred CcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHHHHHHHh-CCCCCceEEEeccC
Q 007538 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREV-DPTGERTFGVLTKL 217 (599)
Q Consensus 141 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~la~~~-d~~g~rti~VltK~ 217 (599)
.+.+|||+|.... .+.+...|++.++++|++++..+.+ +. ...+....... ...+.++++|.||+
T Consensus 57 ~l~~~Dt~~~~~~------------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGE------------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcch------------hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 5679999996321 1123455777889988877655432 11 12333334443 34578999999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 125 Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~ 168 (192)
T 2cjw_A 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168 (192)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred hhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHH
Confidence 99753221111111111123456888888888887766655443
No 150
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.23 E-value=1.3e-11 Score=135.23 Aligned_cols=151 Identities=16% Similarity=0.135 Sum_probs=93.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
..+|+|||.+|+|||||+|+|++..+ +. ..+|..+..-
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~--------------------------------------- 359 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVE--------------------------------------- 359 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEE---------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEE---------------------------------------
Confidence 35899999999999999999999874 21 1122222100
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l 197 (599)
.+.. ....+.||||||... +..+...|++++|++|+|++..+..- .....
T Consensus 360 ---------------~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~V~D~~~~~s-~~~~~ 409 (497)
T 3lvq_E 360 ---------------TVTY-KNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDCADRDR-IDEAR 409 (497)
T ss_dssp ---------------EEES-SSCEEEEEEECCCGG-------------GSGGGGGGGTTCCEEEEEEETTCGGG-HHHHH
T ss_pred ---------------EEEe-CCEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECcchhH-HHHHH
Confidence 1111 245789999999633 23456789999999988776554321 12222
Q ss_pred HHHHH----hCCCCCceEEEeccCCCCCCCCcHHHHHhCc--c--cccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 198 KLARE----VDPTGERTFGVLTKLDLMDKGTNALDVLEGR--S--YRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 198 ~la~~----~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~--~--~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
..... ....+.++|+|+||+|+.+... ..++.... . ......|+.+++.++.++++++..+..
T Consensus 410 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 410 QELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 22222 2224789999999999976432 22222111 1 112234788889888888776665543
No 151
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.22 E-value=4.4e-12 Score=119.66 Aligned_cols=104 Identities=12% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--c-ccHHHHHHHHHhCCCCCceEEEec
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--I-ATSDAMKLAREVDPTGERTFGVLT 215 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~-~~~~~l~la~~~d~~g~rti~Vlt 215 (599)
...+.+|||||. +....+...|++++++++++++..+.. + ....|+..++...+ +.++++|.|
T Consensus 55 ~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~n 120 (184)
T 2zej_A 55 DLVLNVWDFAGR-------------EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGT 120 (184)
T ss_dssp -CEEEEEEECSH-------------HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEE
T ss_pred ceEEEEEecCCC-------------HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEE
Confidence 356889999997 344556677888889887766543321 1 11233333333332 678999999
Q ss_pred cCCCCCCCCcH---HHHHhCcccccCCC----eEEEEcCChh-hhccCC
Q 007538 216 KLDLMDKGTNA---LDVLEGRSYRLQHP----WVGIVNRSQA-DINRNI 256 (599)
Q Consensus 216 K~Dl~~~~~~~---~~~~~~~~~~l~~g----~~~v~~~s~~-~i~~~~ 256 (599)
|+|+.+..... ...........+.. |+.+++.++. ++.+++
T Consensus 121 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp CGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHH
T ss_pred CCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHH
Confidence 99997532210 11111112223444 7777777663 444433
No 152
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=2.2e-12 Score=136.85 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEE
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 77 (599)
+|++||.+|+|||||+|+|+|..........||+-|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 79999999999999999999987433344557776643
No 153
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.19 E-value=1.2e-11 Score=118.23 Aligned_cols=161 Identities=13% Similarity=0.146 Sum_probs=88.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|+|+|+.|||||||+++|+|..+.+......+..+ .
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~---~------------------------------------- 43 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF---A------------------------------------- 43 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEE---E-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeE---E-------------------------------------
Confidence 356899999999999999999999875211111100000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-H
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~-~ 194 (599)
.-.+.+.+ ....+.||||||.... +.+...|.+.+++++++++..+.. +.. .
T Consensus 44 ------------~~~i~~~g-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (199)
T 2f9l_A 44 ------------TRSIQVDG-KTIKAQIWDTAGQERY-------------RRITSAYYRGAVGALLVYDIAKHLTYENVE 97 (199)
T ss_dssp ------------EEEEEETT-EEEEEEEEECSSGGGT-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEECC-EEEEEEEEECCCchhh-------------hhhhHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 00111111 1235778999996431 233455778889887766543321 111 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
.++...+.....+.+++.|+||+|+.+................+..++.+++.++.++.+.+..+....
T Consensus 98 ~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 98 RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 233333444445789999999999975332111111111122334566667766666666555544443
No 154
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.9e-11 Score=128.07 Aligned_cols=122 Identities=19% Similarity=0.203 Sum_probs=78.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..++|++||.||||||||+|+|+|......+...||+-|..-.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~------------------------------------ 114 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI------------------------------------ 114 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE------------------------------------
Confidence 45689999999999999999999988766777788888833221
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.. ....++|+||||+...+..+ ......+...++.+|+|+++|+ ++.+...-+.
T Consensus 115 ------------------~~-~~~~i~l~D~pGl~~~a~~~------~~~g~~~l~~i~~ad~il~vvD-~~~p~~~~~~ 168 (376)
T 4a9a_A 115 ------------------RY-KGAKIQMLDLPGIIDGAKDG------RGRGKQVIAVARTCNLLFIILD-VNKPLHHKQI 168 (376)
T ss_dssp ------------------EE-TTEEEEEEECGGGCCC-----------CHHHHHHHHHHHCSEEEEEEE-TTSHHHHHHH
T ss_pred ------------------Ee-CCcEEEEEeCCCccCCchhh------hHHHHHHHHHHHhcCccccccc-cCccHHHHHH
Confidence 11 23458899999998765432 2233445667888998866654 4443322221
Q ss_pred H-HHHHHhC--CCCCceEEEeccCCCC
Q 007538 197 M-KLAREVD--PTGERTFGVLTKLDLM 220 (599)
Q Consensus 197 l-~la~~~d--~~g~rti~VltK~Dl~ 220 (599)
+ .-...++ -...|.++|+||.|.-
T Consensus 169 i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 169 IEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1 1122222 1246788999999963
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.18 E-value=1.5e-12 Score=142.64 Aligned_cols=155 Identities=14% Similarity=0.220 Sum_probs=93.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..|+|+|+|++++|||||+++|++..+.....+..|.-.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 578999999999999999999998765222222222111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
.... +..+....++||||||... +..+...+++.+|++||+++. +... ...+
T Consensus 42 ---------~~~~----v~~~~g~~i~~iDTPGhe~-------------f~~~~~~~~~~aD~vILVVDa-~dg~-~~qt 93 (537)
T 3izy_P 42 ---------GAFL----VSLPSGEKITFLDTPGHAA-------------FSAMRARGTQVTDIVILVVAA-DDGV-MKQT 93 (537)
T ss_dssp ---------TSCC----BCSSCSSCCBCEECSSSCC-------------TTTSBBSSSBSBSSCEEECBS-SSCC-CHHH
T ss_pred ---------eEEE----EEeCCCCEEEEEECCChHH-------------HHHHHHHHHccCCEEEEEEEC-CCCc-cHHH
Confidence 0000 1222345799999999633 223445678889998887654 3333 3445
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCCCCc-H-HHHHhCcc----cccCCCeEEEEcCChhhhccCCCHHH
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDKGTN-A-LDVLEGRS----YRLQHPWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~~~~-~-~~~~~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~~ 260 (599)
...+..+...+.|+|+|+||+|+.+.... . ..+..... +.....|+.+++.++.++++++..+.
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~ 163 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATI 163 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHH
Confidence 55555566667899999999999754321 1 11111111 11123466777777777665554443
No 156
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.8e-11 Score=133.37 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=94.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
...+|++||.+|+|||||+|+|++... .+..+.- ..+.......+..-.++..+.+....+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i------------~~~~~~~~~~g~~~~~~a~~~d~~~~e-- 226 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL------------RKLQRESETMGKSSFKFAWIMDQTNEE-- 226 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH------------HHHHHHSSCSSSSCCSSSHHHHHHHHH--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH------------HHHHhhhhhccccccceeeeeccchhh--
Confidence 456999999999999999999998743 1111000 000000000011111222222222222
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-----
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI----- 191 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~----- 191 (599)
+..|.+... .... +.. ....++||||||..+ +...+..+++.+|++||+|+..+..+
T Consensus 227 ~~~GiTid~--~~~~--~~~-~~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 227 RERGVTVSI--CTSH--FST-HRANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFD 288 (611)
T ss_dssp HHTTTCCSC--SCCE--EEC-SSCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCC
T ss_pred hhCCeeEee--eeEE--Eec-CCceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccch
Confidence 222322222 2222 222 346799999999832 35566778999999988776543211
Q ss_pred ccHHHHHHHHHhCCCC-CceEEEeccCCCCCCCCcH----HHHHhCcccc-----cCCCeEEEEcCChhhhccC
Q 007538 192 ATSDAMKLAREVDPTG-ERTFGVLTKLDLMDKGTNA----LDVLEGRSYR-----LQHPWVGIVNRSQADINRN 255 (599)
Q Consensus 192 ~~~~~l~la~~~d~~g-~rti~VltK~Dl~~~~~~~----~~~~~~~~~~-----l~~g~~~v~~~s~~~i~~~ 255 (599)
........+......+ .++|+|+||+|+.+..... .+.+...... ....|+.+++.++.++.++
T Consensus 289 ~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 289 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 0112222222223334 4599999999998632211 1111111111 1356889999998888765
No 157
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.13 E-value=9.9e-11 Score=124.76 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=62.6
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-ccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++||||||. +.+...+..++..+|++||+++..+.. . .+.+.+.+++.... .++++|+||+
T Consensus 75 ~~~~iiDtPGh-------------~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCC-------------GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECG
T ss_pred ceEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECc
Confidence 46899999996 234556677889999998877654432 2 23344555555432 5899999999
Q ss_pred CCCCCCCc--HHHHHhCc---ccccCCCeEEEEcCChhhhccCCC
Q 007538 218 DLMDKGTN--ALDVLEGR---SYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 218 Dl~~~~~~--~~~~~~~~---~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
|+.+.... ..+.+... ......+++.+++.++.++++++.
T Consensus 140 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~ 184 (403)
T 3sjy_A 140 DVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIE 184 (403)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHH
Confidence 99864321 11111111 111245678888887766654333
No 158
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.13 E-value=3.8e-11 Score=125.93 Aligned_cols=123 Identities=13% Similarity=0.163 Sum_probs=55.6
Q ss_pred CCcEEEeCCCCCccCCCC-CCccHHHHHHHHHHHhhcCC-------------CeEEEEEecCCcccccHHHHHHHHHhCC
Q 007538 140 VNLTLIDLPGLTKVAVEG-QPDTIVEDIESMVRSYVEKP-------------NSVILAISPANQDIATSDAMKLAREVDP 205 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~-q~~~~~~~i~~~~~~yi~~~-------------~~iIL~v~~a~~d~~~~~~l~la~~~d~ 205 (599)
..+++|||||+....... .-..+...+.+....|++.+ ++++++++++...+.. ....+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~-~d~~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKP-LDVAFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCH-HHHHHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcch-hHHHHHHHhc-
Confidence 368999999995432110 01123344444444666543 3566667665555533 3335566665
Q ss_pred CCCceEEEeccCCCCCCCCcH--HHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHH
Q 007538 206 TGERTFGVLTKLDLMDKGTNA--LDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (599)
Q Consensus 206 ~g~rti~VltK~Dl~~~~~~~--~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 265 (599)
.+.++|+|+||+|+.+..... .+.+.......+..|+.+++.++.+ ++.+..+.....+
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 578999999999998643211 1122222334456788888887766 5555444443333
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.12 E-value=3.6e-11 Score=131.15 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=63.5
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--------ccHHHHHHHHHhCCCCCce
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTGERT 210 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--------~~~~~l~la~~~d~~g~rt 210 (599)
...++||||||.. .+...+..+++.+|++||+++..+... .+.+.+.++.... ..++
T Consensus 110 ~~~~~iiDTPG~~-------------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~i 174 (483)
T 3p26_A 110 RANFTIVDAPGHR-------------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNL 174 (483)
T ss_dssp SCEEEEECCCCCG-------------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCE
T ss_pred CceEEEEECCCcH-------------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcE
Confidence 5689999999982 345667788999999988876554321 1222333344332 2469
Q ss_pred EEEeccCCCCCCCCcH----HHHHhCcccc-----cCCCeEEEEcCChhhhccCCC
Q 007538 211 FGVLTKLDLMDKGTNA----LDVLEGRSYR-----LQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 211 i~VltK~Dl~~~~~~~----~~~~~~~~~~-----l~~g~~~v~~~s~~~i~~~~~ 257 (599)
|+|+||+|+.+..... .+.+...... ....|+.+++.++.++.+...
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred EEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 9999999998633211 1111111111 134678899999888877654
No 160
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.11 E-value=2e-10 Score=123.69 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=62.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--------ccHHHHHHHHHhCCCCCc-
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTGER- 209 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--------~~~~~l~la~~~d~~g~r- 209 (599)
...++||||||. +.+...+..+++.+|++||+|+.....+ .+.+.+.++.. .+.+
T Consensus 94 ~~~~~iiDTPGh-------------~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~ 157 (439)
T 3j2k_7 94 KKHFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKH 157 (439)
T ss_pred CeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCe
Confidence 458999999997 3445566678889999988776544322 12333333333 4556
Q ss_pred eEEEeccCCCCCCCCc------HHHHHhCccccc------CCCeEEEEcCChhhhccCC
Q 007538 210 TFGVLTKLDLMDKGTN------ALDVLEGRSYRL------QHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 210 ti~VltK~Dl~~~~~~------~~~~~~~~~~~l------~~g~~~v~~~s~~~i~~~~ 256 (599)
+|+|+||+|+.+.... ..+.+......+ ...++++++.++.++.++.
T Consensus 158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS 216 (439)
T ss_pred EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc
Confidence 8999999999653211 111111111111 3468899999988876543
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.11 E-value=6.1e-11 Score=129.10 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHHHHHHHHhCCCCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--~~~~~l~la~~~d~~g~rti~VltK 216 (599)
...++||||||. +.+...+..++..+|++||+++..+ .. .+.+.+.+++. .+.+.|+|+||
T Consensus 72 ~~~i~iiDtPGh-------------~~~~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~---~~ip~IvviNK 134 (482)
T 1wb1_A 72 NYRITLVDAPGH-------------ADLIRAVVSAADIIDLALIVVDAKE-GPKTQTGEHMLILDH---FNIPIIVVITK 134 (482)
T ss_dssp TEEEEECCCSSH-------------HHHHHHHHHHTTSCCEEEEEEETTT-CSCHHHHHHHHHHHH---TTCCBCEEEEC
T ss_pred CEEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEecCC-CccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 357999999996 3455666788999999988776443 22 12334444444 46788999999
Q ss_pred CCCCCCCC--c----HHHHHhCc-ccccCCCeEEEEcCChhhhccCCCHHHH
Q 007538 217 LDLMDKGT--N----ALDVLEGR-SYRLQHPWVGIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 217 ~Dl~~~~~--~----~~~~~~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 261 (599)
+|+.+... . ..+++... .. ....++.+++.++.++++++..+..
T Consensus 135 ~Dl~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 135 SDNAGTEEIKRTEMIMKSILQSTHNL-KNSSIIPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHSSSG-GGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHHhhhccc-ccceEEEEECcCCCCHHHHHHHHHH
Confidence 99986321 0 11122111 11 1457888888888777665554444
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.07 E-value=5.3e-11 Score=113.13 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccc-cccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHH
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (599)
...+|+|+|+.|||||||+++|+|..+ |..... .+..+ .
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~---~------------------------------------ 67 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEF---A------------------------------------ 67 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEE---E------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEE---E------------------------------------
Confidence 456899999999999999999999865 322211 00000 0
Q ss_pred hhhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-
Q 007538 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT- 193 (599)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~- 193 (599)
.-.+.+.+ ....+.+|||||..+. ..++..|.+.+++++++++..+.. +..
T Consensus 68 -------------~~~i~~~g-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 120 (191)
T 1oix_A 68 -------------TRSIQVDG-KTIKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVYDIAKHLTYENV 120 (191)
T ss_dssp -------------EEEEEETT-EEEEEEEEEECSCCSS-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred -------------EEEEEECC-EEEEEEEEECCCCcch-------------hhhhHHHhhcCCEEEEEEECcCHHHHHHH
Confidence 00111111 1124568999998542 123455677888877766543321 111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhcc
Q 007538 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (599)
Q Consensus 194 ~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~ 254 (599)
..++...+.......+++.|+||+|+.+................+..++.+++.+..++++
T Consensus 121 ~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 121 ERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 1233333444445689999999999975332111111111122234455666555555443
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.04 E-value=1.1e-10 Score=128.02 Aligned_cols=138 Identities=14% Similarity=0.205 Sum_probs=80.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..+.|+|+|.+|||||||+|+|++..-.....+.+.... ..+. ...+....+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~--------------------~~~~------~~~d~~~~e-- 63 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRK--------------------AARH------ATSDWMELE-- 63 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC------------------------C------CHHHHHHHH--
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccc--------------------cccc------eecccchhh--
Confidence 467899999999999999999975321110001000000 0000 011111111
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
...| ..+....+.+. . ....++||||||..+. ...+..|++.+|++|++++..+ .. ....
T Consensus 64 ~~~G--iTi~~~~~~~~--~-~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvDa~~-g~-~~~t 123 (528)
T 3tr5_A 64 KQRG--ISVTTSVMQFP--Y-KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVIDAAK-GV-EPRT 123 (528)
T ss_dssp HHHC--CSSSSSEEEEE--E-TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTT-CS-CHHH
T ss_pred hcCC--eeEEEeEEEEE--e-CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEeCCC-CC-CHHH
Confidence 1122 22333333332 2 2467999999998442 3357789999999988776544 33 3344
Q ss_pred HHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
..+.+.+...+.|+++|+||+|+...
T Consensus 124 ~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 124 IKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 45556666678899999999999653
No 164
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.02 E-value=1.1e-09 Score=116.92 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=56.8
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d--~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++||||||. +.+......++..+|++||+++..+.. ..+.+.+.+++.+. ..++++|+||+
T Consensus 81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGH-------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECT
T ss_pred cEEEEEECCCH-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEcc
Confidence 46899999995 334455566777889998877644321 12234444444432 24799999999
Q ss_pred CCCCCCC--cH----HHHHhCcccccCCCeEEEEcCChhhhccCCC
Q 007538 218 DLMDKGT--NA----LDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (599)
Q Consensus 218 Dl~~~~~--~~----~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~ 257 (599)
|+.+... .. .+++.+ .......++.+++.++.++++++.
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~-~~~~~~~~i~vSA~~g~gi~~L~~ 190 (408)
T 1s0u_A 146 DLVDEKQAEENYEQIKEFVKG-TIAENAPIIPISAHHEANIDVLLK 190 (408)
T ss_dssp TSSCTTTTTTHHHHHHHHHTT-STTTTCCEEEC------CHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh-cCCCCCeEEEeeCCCCCCHHHHHH
Confidence 9987542 11 222221 112245688888887777654443
No 165
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.01 E-value=8.4e-10 Score=117.82 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=60.6
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc--ccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~--d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++||||||. +.+...+...+..+|++||+++.... ...+.+.+.+++.+. ..++|+|+||+
T Consensus 83 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~ 147 (410)
T 1kk1_A 83 RRVSFIDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKI 147 (410)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred cEEEEEECCCh-------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECc
Confidence 46899999996 33445566677889999887764432 112334445555443 25789999999
Q ss_pred CCCCCCC--c----HHHHHhCcccccCCCeEEEEcCChhhhccCC
Q 007538 218 DLMDKGT--N----ALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 218 Dl~~~~~--~----~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~ 256 (599)
|+.+... . +.+++.+. .....+++.+++.++.++++++
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~L~ 191 (410)
T 1kk1_A 148 ELVDKEKALENYRQIKEFIEGT-VAENAPIIPISALHGANIDVLV 191 (410)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTS-TTTTCCEEECBTTTTBSHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhc-CcCCCeEEEeeCCCCCCHHHHH
Confidence 9986431 0 11222211 1123567777777776665433
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.00 E-value=6e-10 Score=119.83 Aligned_cols=104 Identities=10% Similarity=0.042 Sum_probs=61.1
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-ccHHHHHHHHHhCCCCCceEEEecc
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAMKLAREVDPTGERTFGVLTK 216 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~~~~l~la~~~d~~g~rti~VltK 216 (599)
....++||||||..+ +...+..|+..+|++||+++..+... .+.+.+.+++... ..++|+|+||
T Consensus 102 ~~~~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~--~~~iIvviNK 166 (434)
T 1zun_B 102 AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLG--IKHIVVAINK 166 (434)
T ss_dssp SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTT--CCEEEEEEEC
T ss_pred CCceEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEEEc
Confidence 345799999999632 23445568899999988776544321 1233444555432 2368999999
Q ss_pred CCCCCCCCcH----HHHHhCcccccC-----CCeEEEEcCChhhhccCC
Q 007538 217 LDLMDKGTNA----LDVLEGRSYRLQ-----HPWVGIVNRSQADINRNI 256 (599)
Q Consensus 217 ~Dl~~~~~~~----~~~~~~~~~~l~-----~g~~~v~~~s~~~i~~~~ 256 (599)
+|+.+...+. .+.+......++ ..++.+++.++.++.+.+
T Consensus 167 ~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 167 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 9998632211 111111111222 346777888777776543
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.00 E-value=2.8e-11 Score=131.42 Aligned_cols=149 Identities=17% Similarity=0.244 Sum_probs=85.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..|.|+|+|+.++|||||+++|.+..+.....+..|.-.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 578999999999999999999987654211111111000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~~~ 195 (599)
.... +. .+...++||||||.... ..+...++..+|++||+++..+.. ..+.+
T Consensus 42 ---------~~~~----v~-~~~~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~aILVVda~~g~~~qT~e 94 (501)
T 1zo1_I 42 ---------GAYH----VE-TENGMITFLDTPGHAAF-------------TSMRARGAQATDIVVLVVAADDGVMPQTIE 94 (501)
T ss_dssp ---------SCCC----CC-TTSSCCCEECCCTTTCC-------------TTSBCSSSBSCSSEEEEEETTTBSCTTTHH
T ss_pred ---------EEEE----EE-ECCEEEEEEECCCcHHH-------------HHHHHHHHhhCCEEEEEeecccCccHHHHH
Confidence 0000 11 12357899999997432 122345778899998887643321 12334
Q ss_pred HHHHHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhC-ccccc----CCCeEEEEcCChhhhccCC
Q 007538 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEG-RSYRL----QHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 196 ~l~la~~~d~~g~rti~VltK~Dl~~~~~-~~~~~~~~-~~~~l----~~g~~~v~~~s~~~i~~~~ 256 (599)
.+..++. .+.|+|+|+||+|+.+... .....+.. ...+. ..+|+.+++.++.++++++
T Consensus 95 ~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLl 158 (501)
T 1zo1_I 95 AIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELL 158 (501)
T ss_dssp HHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHH
T ss_pred HHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhh
Confidence 4444443 4678999999999975322 11111111 11111 1357777777777765433
No 168
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.00 E-value=4e-10 Score=124.91 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=86.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+.+.|+++|+.++|||||+++|++.. +..++... . . .+.|. ... +
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~--~--~-----------------~~~D~------~~~--E 49 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREK--R--E-----------------QLLDT------LDV--E 49 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCcccccc--c--c-----------------ccccc------chh--h
Confidence 46789999999999999999997531 11111100 0 0 00000 000 0
Q ss_pred hhcCCCCCcCCccEEEEEecCC--CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
+ ..+..+....+.+....++ ...++||||||..+ +...+..+++.+|++||+++..+ ....+
T Consensus 50 r--erGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d-------------F~~ev~r~l~~aD~aILVVDa~~-gv~~q 113 (600)
T 2ywe_A 50 R--ERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD-------------FSYEVSRALAACEGALLLIDASQ-GIEAQ 113 (600)
T ss_dssp --------CCCCSEEEEEECTTSCEEEEEEECCCCSGG-------------GHHHHHHHHHTCSEEEEEEETTT-BCCHH
T ss_pred h--cccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh-------------HHHHHHHHHHhCCEEEEEEECCC-CccHH
Confidence 0 1112233334444433222 24688999999843 23456677899999988776443 33222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCcHHHHHhCcccccCC---CeEEEEcCChhhhccCCC
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH---PWVGIVNRSQADINRNID 257 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~---g~~~v~~~s~~~i~~~~~ 257 (599)
...........+.++|+|+||+|+.+.. ...........++. .++.+++.++.+++++++
T Consensus 114 -t~~~~~~a~~~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle 176 (600)
T 2ywe_A 114 -TVANFWKAVEQDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILE 176 (600)
T ss_dssp -HHHHHHHHHHTTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHH
T ss_pred -HHHHHHHHHHCCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHH
Confidence 2222222223578899999999997543 21111111111223 367778877777665443
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.99 E-value=1.7e-10 Score=124.95 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=92.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCC-CCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..+|+++|++++|||||+|+|++.. .++... +. ... .+.. ..+..-.+++-+.+....+.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~~-~~~------------~~~~----~~g~~~~~~a~~~d~~~~er- 67 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-IE-KFE------------KEAA----ELGKGSFKYAWVLDKLKAER- 67 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-HH-HHH------------HHGG----GGSSSCCCHHHHHHHHHHHH-
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-HH-Hhh------------hhHH----hcCCcchhhhhhhccchhHH-
Confidence 4589999999999999999998741 111000 00 000 0000 00000012232323222222
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-----
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI----- 191 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~----- 191 (599)
..|.+..+.. . .+.. ....++||||||.. .+...+..++..+|++||+++..+...
T Consensus 68 -~~GiTi~~~~--~--~~~~-~~~~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~ 128 (458)
T 1f60_A 68 -ERGITIDIAL--W--KFET-PKYQVTVIDAPGHR-------------DFIKNMITGTSQADCAILIIAGGVGEFEAGIS 128 (458)
T ss_dssp -HTTCCCSCSC--E--EEEC-SSEEEEEEECCCCT-------------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTC
T ss_pred -hcCcEEEEEE--E--EEec-CCceEEEEECCCcH-------------HHHHHHHhhhhhCCEEEEEEeCCcCccccccC
Confidence 2333222221 1 2223 24579999999962 234556778999999988776443211
Q ss_pred ---ccHHHHHHHHHhCCCCC-ceEEEeccCCCCCCCCcH----HHHHhCcc--ccc---CCCeEEEEcCChhhhccCC
Q 007538 192 ---ATSDAMKLAREVDPTGE-RTFGVLTKLDLMDKGTNA----LDVLEGRS--YRL---QHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 192 ---~~~~~l~la~~~d~~g~-rti~VltK~Dl~~~~~~~----~~~~~~~~--~~l---~~g~~~v~~~s~~~i~~~~ 256 (599)
.+.+.+.+++. .+. ++|+|+||+|+.+..... .+.+.... ... ...|+.+++.++.++.+..
T Consensus 129 ~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 129 KDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp TTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred cchhHHHHHHHHHH---cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 12233334443 344 489999999998422111 11111111 111 2578999999888876543
No 170
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.96 E-value=6.3e-10 Score=116.97 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCce-EEEec
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERT-FGVLT 215 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~--~~~~l~la~~~d~~g~rt-i~Vlt 215 (599)
...++||||||..+ +...+..+++.+|++||+++ +.... +.+.+.+++. .+.+. |+|+|
T Consensus 59 ~~~i~iiDtPGh~~-------------f~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~---~~i~~~ivvvN 120 (370)
T 2elf_A 59 GRNMVFVDAHSYPK-------------TLKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDL---LGFKHGIIALT 120 (370)
T ss_dssp SSEEEEEECTTTTT-------------CHHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred CeEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 35689999999833 12334456789999988887 33332 2344444444 35566 99999
Q ss_pred -cCCC
Q 007538 216 -KLDL 219 (599)
Q Consensus 216 -K~Dl 219 (599)
|+|+
T Consensus 121 NK~Dl 125 (370)
T 2elf_A 121 RSDST 125 (370)
T ss_dssp CGGGS
T ss_pred eccCC
Confidence 9999
No 171
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.96 E-value=4e-10 Score=125.19 Aligned_cols=167 Identities=14% Similarity=0.197 Sum_probs=84.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+.+.|+|+|+.++|||||+++|++.. +..++.. .. . .+.|... . +
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~--~~--~-----------------~~~D~~~------~--E 47 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDRE--ME--A-----------------QVLDSMD------L--E 47 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCccccc--cc--c-----------------cccccch------h--h
Confidence 45689999999999999999998632 1111100 00 0 0000000 0 0
Q ss_pred hhcCCCCCcCCccEEEEEecCC--CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~ 194 (599)
+ ..+..+....+.+.....+ ...++||||||..+ +...+..+++.+|++||+++..+ ....+
T Consensus 48 r--erGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d-------------F~~ev~~~l~~aD~aILVVDa~~-gv~~q 111 (599)
T 3cb4_D 48 R--ERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD-------------FSYEVSRSLAACEGALLVVDAGQ-GVEAQ 111 (599)
T ss_dssp -----------CEEEEEEECTTSCEEEEEEEECCCCGG-------------GHHHHHHHHHHCSEEEEEEETTT-CCCTH
T ss_pred h--cccceeeeeEEEEEEecCCCCeEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEEECCC-CCCHH
Confidence 0 0112233334444333212 35689999999843 34456778889999988776543 32222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCCCCCCCc-HHHHHhCcccccCC---CeEEEEcCChhhhccCCCH
Q 007538 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQH---PWVGIVNRSQADINRNIDM 258 (599)
Q Consensus 195 ~~l~la~~~d~~g~rti~VltK~Dl~~~~~~-~~~~~~~~~~~l~~---g~~~v~~~s~~~i~~~~~~ 258 (599)
.. .........+.++|+|+||+|+.+...+ ..+.+. ..++. .++.+++.++.+++++++.
T Consensus 112 t~-~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~---~~lg~~~~~vi~vSAktg~GI~~Ll~~ 175 (599)
T 3cb4_D 112 TL-ANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIE---DIVGIDATDAVRCSAKTGVGVQDVLER 175 (599)
T ss_dssp HH-HHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHH---HHTCCCCTTCEEECTTTCTTHHHHHHH
T ss_pred HH-HHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHH---HHhCCCcceEEEeecccCCCchhHHHH
Confidence 21 1122222346799999999999764321 111111 11222 4788888888777654443
No 172
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.94 E-value=1.9e-10 Score=127.83 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl 219 (599)
+.++||||||..+.. .+...+++.+|++|||++..+ .+ .......++.+...+.|+++|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~-------------~~~~r~~~~aD~aILVvDa~~-Gv-~~qT~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFT-------------TLRKRGGALADLAILIVDINE-GF-KPQTQEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCT-------------TSBCSSSBSCSEEEEEEETTT-CC-CHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEEECCC-Cc-cHhHHHHHHHHHHcCCeEEEEeccccc
Confidence 458999999985432 223357788999888776443 33 122222333333457899999999999
Q ss_pred CC
Q 007538 220 MD 221 (599)
Q Consensus 220 ~~ 221 (599)
.+
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 75
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.94 E-value=1.1e-09 Score=105.02 Aligned_cols=114 Identities=13% Similarity=0.239 Sum_probs=57.6
Q ss_pred CcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhc---CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE---KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 141 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~---~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
.+.++||||+..... +....+.++..+..|++ ..+.+++++. ...... .....+...+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~-~~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVLMD-IRHPLK-DLDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCCC-HHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEEEE-CCCCCc-hhHHHHHHHHHHcCCCeEEEEecc
Confidence 688999999854211 11123445555666663 5666666554 333221 111123333333467899999999
Q ss_pred CCCCCCCcH--HHHHhCcc--cccCCCeEEEEcCChhhhccCCCHH
Q 007538 218 DLMDKGTNA--LDVLEGRS--YRLQHPWVGIVNRSQADINRNIDMI 259 (599)
Q Consensus 218 Dl~~~~~~~--~~~~~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~ 259 (599)
|+...+... ...+.... ......++++++.++.++++.+..+
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l 193 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 193 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHH
Confidence 998654211 11121111 1122345667776666655544433
No 174
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.94 E-value=8.5e-10 Score=117.60 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=46.5
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-ccHHHHHHHHHhCCCCCc-eEEEec
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAMKLAREVDPTGER-TFGVLT 215 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~~~~l~la~~~d~~g~r-ti~Vlt 215 (599)
....++||||||..+ +...+..+++.+|++||+++..+... .+.+.+.+++. .+.+ +++|+|
T Consensus 73 ~~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~---~~ip~iivviN 136 (405)
T 2c78_A 73 AKRHYSHVDCPGHAD-------------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ---VGVPYIVVFMN 136 (405)
T ss_dssp SSCEEEEEECCCSGG-------------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CCeEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH---cCCCEEEEEEE
Confidence 346799999999732 34556678899999988876544322 12233444443 3566 789999
Q ss_pred cCCCCC
Q 007538 216 KLDLMD 221 (599)
Q Consensus 216 K~Dl~~ 221 (599)
|+|+.+
T Consensus 137 K~Dl~~ 142 (405)
T 2c78_A 137 KVDMVD 142 (405)
T ss_dssp CGGGCC
T ss_pred CccccC
Confidence 999985
No 175
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.93 E-value=1.5e-09 Score=113.27 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=54.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||+.. ++ ......+|.+++++++...+ ..+ .+ ...+. ..+.++|+||+|
T Consensus 166 ~~~~iliDT~Gi~~------~~----------~~l~~~~d~vl~V~d~~~~~-~~~-~i--~~~il--~~~~ivVlNK~D 223 (349)
T 2www_A 166 GYDIILIETVGVGQ------SE----------FAVADMVDMFVLLLPPAGGD-ELQ-GI--KRGII--EMADLVAVTKSD 223 (349)
T ss_dssp TCSEEEEECCCC--------CH----------HHHHTTCSEEEEEECCC----------------C--CSCSEEEECCCS
T ss_pred CCCEEEEECCCcch------hh----------hhHHhhCCEEEEEEcCCcch-hHH-Hh--HHHHH--hcCCEEEEeeec
Confidence 56899999999843 11 12356789887766554321 111 11 11121 357899999999
Q ss_pred CCCCCC---cHHHHHhC--cccc----cCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 219 LMDKGT---NALDVLEG--RSYR----LQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 219 l~~~~~---~~~~~~~~--~~~~----l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
+.+... ....+..+ ...+ ....++.+++.++.++++++..+.....
T Consensus 224 l~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 224 GDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 974211 01111110 0011 1224567788888888877776665543
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=9.7e-10 Score=116.86 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=91.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
..+.|++||.+||||||||++|+|....-.+...+|..|..-
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-------------------------------------- 197 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-------------------------------------- 197 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE--------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee--------------------------------------
Confidence 346799999999999999999999743112222333333110
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc-cHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-TSD 195 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~-~~~ 195 (599)
.+.......++++|+||+......+. .+... ....+..++.++.++......+. .+.
T Consensus 198 ----------------~V~~~~~~~~~l~DtpGli~~a~~~~--~L~~~----fl~~~era~~lL~vvDls~~~~~~ls~ 255 (416)
T 1udx_A 198 ----------------VVEVSEEERFTLADIPGIIEGASEGK--GLGLE----FLRHIARTRVLLYVLDAADEPLKTLET 255 (416)
T ss_dssp ----------------EEECSSSCEEEEEECCCCCCCGGGSC--CSCHH----HHHHHTSSSEEEEEEETTSCHHHHHHH
T ss_pred ----------------EEEecCcceEEEEeccccccchhhhh--hhhHH----HHHHHHHHHhhhEEeCCccCCHHHHHH
Confidence 01122235689999999976432211 01111 22345678888776654411111 112
Q ss_pred HHHHHHHhCC--CCCceEEEeccCCCCCCCCcHHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHH
Q 007538 196 AMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (599)
Q Consensus 196 ~l~la~~~d~--~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 263 (599)
+.+....+.+ ...|.++|+||+|+... . ..+.+.......+..++.+++.+..++++++..+....
T Consensus 256 g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 256 LRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp HHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 2222222221 24688999999999865 2 22222211122345678888888887776665555443
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.92 E-value=1.2e-09 Score=114.28 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=60.5
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||+... ....+..+|++++++++...+. .+ .+ ...+ ...+.++|+||+|
T Consensus 171 ~~~~iiiDTpGi~~~----------------~~~~~~~aD~vl~V~d~~~~~~-~~-~l--~~~~--~~~p~ivVlNK~D 228 (355)
T 3p32_A 171 GFDVILIETVGVGQS----------------EVAVANMVDTFVLLTLARTGDQ-LQ-GI--KKGV--LELADIVVVNKAD 228 (355)
T ss_dssp TCCEEEEEECSCSSH----------------HHHHHTTCSEEEEEEESSTTCT-TT-TC--CTTS--GGGCSEEEEECCC
T ss_pred CCCEEEEeCCCCCcH----------------HHHHHHhCCEEEEEECCCCCcc-HH-HH--HHhH--hhcCCEEEEECCC
Confidence 478999999997431 1122478999888877654332 11 10 0101 1358899999999
Q ss_pred CCCCCCc--HHHHHhCcc-------cccCCCeEEEEcCChhhhccCCCHHHHHHH
Q 007538 219 LMDKGTN--ALDVLEGRS-------YRLQHPWVGIVNRSQADINRNIDMIVARRK 264 (599)
Q Consensus 219 l~~~~~~--~~~~~~~~~-------~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 264 (599)
+.+.... ..+.+.... ...+.+++.+++.++.++++++..+.....
T Consensus 229 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 229 GEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9743210 111111110 012346888999998888877766655443
No 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.92 E-value=1.4e-09 Score=117.00 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=61.7
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc------cc--cHHHHHHHHHhCCCCCce
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD------IA--TSDAMKLAREVDPTGERT 210 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d------~~--~~~~l~la~~~d~~g~rt 210 (599)
...++||||||..+ +...+..|++.+|++||+++..+.. +. +.+.+.+++... -.++
T Consensus 83 ~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~--~~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG--LDQL 147 (435)
T ss_dssp SCEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT--CTTC
T ss_pred CeEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC--CCeE
Confidence 46799999999732 3445677899999998887655421 21 122233333332 2468
Q ss_pred EEEeccCCCCCCCC--cH----HHHHhCccccc-----CCCeEEEEcCChhhhccCC
Q 007538 211 FGVLTKLDLMDKGT--NA----LDVLEGRSYRL-----QHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 211 i~VltK~Dl~~~~~--~~----~~~~~~~~~~l-----~~g~~~v~~~s~~~i~~~~ 256 (599)
|+|+||+|+.+... .. .+.+......+ ...|+.+++.++.++.+..
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 99999999987421 11 11111111111 2468888988888776554
No 179
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=8.3e-10 Score=114.96 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=27.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCccccccccccc
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (599)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 3799999999999999999999875344445667666
No 180
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.88 E-value=2.2e-09 Score=109.91 Aligned_cols=72 Identities=14% Similarity=0.299 Sum_probs=47.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--HHH---HHHHHHhCCCCCceEEE
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDA---MKLAREVDPTGERTFGV 213 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~--~~~---l~la~~~d~~g~rti~V 213 (599)
...|.||||||.-+.... .+ +...|.++++++|+|++..+. +.. ..+ +..++...| +.++++|
T Consensus 45 ~v~LqIWDTAGQErf~~~--------~l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillv 112 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEP--------SY--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVL 112 (331)
T ss_dssp SSCEEEEECCSCSSSCCC--------SH--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred EEEEEEEECCCchhccch--------hh--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEE
Confidence 367999999998543100 00 357789999999888766554 211 122 222333344 6899999
Q ss_pred eccCCCCCC
Q 007538 214 LTKLDLMDK 222 (599)
Q Consensus 214 ltK~Dl~~~ 222 (599)
.||+|+.++
T Consensus 113 gNK~DL~~~ 121 (331)
T 3r7w_B 113 IHKVDGLSE 121 (331)
T ss_dssp CCCCCSSCS
T ss_pred EECcccCch
Confidence 999999864
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.87 E-value=4e-09 Score=115.85 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=50.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...++||||||..+. ...+..|++.+|++|++++..+. . ......+.+.....+.++++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa~~g-~-~~~t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDAAKG-V-EDRTRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTTC-S-CHHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeCCcc-c-hHHHHHHHHHHHHcCCCEEEEEcCcC
Confidence 467999999998432 23466789999999887765543 3 23334556666667889999999999
Q ss_pred CCCCC
Q 007538 219 LMDKG 223 (599)
Q Consensus 219 l~~~~ 223 (599)
+....
T Consensus 146 l~~~~ 150 (529)
T 2h5e_A 146 RDIRD 150 (529)
T ss_dssp SCCSC
T ss_pred Ccccc
Confidence 97643
No 182
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=3.2e-09 Score=112.93 Aligned_cols=81 Identities=16% Similarity=0.354 Sum_probs=40.4
Q ss_pred CCcEEEeCCCCCccCCCC-CCccHHHHHHHHHHHh-----------hcCCC--eEEEEEecCCcccccHHHHHHHHHhCC
Q 007538 140 VNLTLIDLPGLTKVAVEG-QPDTIVEDIESMVRSY-----------VEKPN--SVILAISPANQDIATSDAMKLAREVDP 205 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~-q~~~~~~~i~~~~~~y-----------i~~~~--~iIL~v~~a~~d~~~~~~l~la~~~d~ 205 (599)
..+++|||||+....... .-..+.+.+......| +.+++ ++++++.|....+...+ ..+.+.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 468999999996532110 0011222233333333 44444 45555555433443333 456666664
Q ss_pred CCCceEEEeccCCCCCC
Q 007538 206 TGERTFGVLTKLDLMDK 222 (599)
Q Consensus 206 ~g~rti~VltK~Dl~~~ 222 (599)
+.++|+|+||+|+...
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 183
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.86 E-value=5e-10 Score=111.63 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=47.8
Q ss_pred CCCeEEEEEecCCc---cccc-HHHHHHHHHh-CCCCCceEEEeccCCCCCCCCcHHHHHhCcccc-cCCCeEEEEcCCh
Q 007538 176 KPNSVILAISPANQ---DIAT-SDAMKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYR-LQHPWVGIVNRSQ 249 (599)
Q Consensus 176 ~~~~iIL~v~~a~~---d~~~-~~~l~la~~~-d~~g~rti~VltK~Dl~~~~~~~~~~~~~~~~~-l~~g~~~v~~~s~ 249 (599)
++|++|+|++..+. .+.. ..++..+... ...+.++++|+||+|+.+... . +........ .+..|+.+++.++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-v-~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-I-RDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-H-HHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-H-HHHHHHHHhcCCCeEEEEECCCC
Confidence 68999888776542 2211 2333333322 234689999999999964321 1 111111111 3567889999988
Q ss_pred hhhccCCCHHH
Q 007538 250 ADINRNIDMIV 260 (599)
Q Consensus 250 ~~i~~~~~~~~ 260 (599)
.++++.+..+.
T Consensus 240 ~gv~elf~~l~ 250 (255)
T 3c5h_A 240 VNVDLAFSTLV 250 (255)
T ss_dssp BSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88776655443
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.82 E-value=2e-09 Score=116.68 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=55.7
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--------ccHHHHHHHHHhCCCCCc-
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTGER- 209 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~--------~~~~~l~la~~~d~~g~r- 209 (599)
...++||||||.. .+...+..+++.+|++||+|+..+..+ .+.+.+.++.. .+.+
T Consensus 120 ~~~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHK-------------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINH 183 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSS
T ss_pred CeEEEEEECCCcH-------------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCE
Confidence 4678999999973 234445667899999988876544321 23333444443 3555
Q ss_pred eEEEeccCCCCCCCCc----------HHHHHhCc-ccc--cCCCeEEEEcCChhhhccCC
Q 007538 210 TFGVLTKLDLMDKGTN----------ALDVLEGR-SYR--LQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 210 ti~VltK~Dl~~~~~~----------~~~~~~~~-~~~--l~~g~~~v~~~s~~~i~~~~ 256 (599)
+|+|+||+|+.+.+.+ ..+++... ... ....|+.+++.++.++.+.+
T Consensus 184 iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 184 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 8999999999653211 11111110 000 12457888888888877655
No 185
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.81 E-value=9e-09 Score=107.72 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=62.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (599)
++|++||.+|+|||||+|+|+|..........||..|..-.. .. ++ .. +.......
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-~v-------------~~------~~----l~~~~~~~ 57 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV-PL-------------ED------ER----LYALQRTF 57 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-EC-------------CC------HH----HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE-ec-------------Ch------HH----HHHHHHHh
Confidence 479999999999999999999875323344567777743221 10 00 00 11111111
Q ss_pred cCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 007538 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN 188 (599)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~ 188 (599)
.. ..... ......+.||||||+......+ +.+ .+....+++.+|+|++|+...+
T Consensus 58 ~~-~~~~~---------~~~~~~i~lvDtpGl~~~a~~~--~~l----g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 58 AK-GERVP---------PVVPTHVEFVDIAGLVKGAHKG--EGL----GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CB-TTBCC---------CEECCEEEEEECCSCCCCCCSS--SCT----THHHHHHHHTCSEEEEEEECCC
T ss_pred cc-ccccc---------ccCCceEEEEECCCcccccccc--chH----HHHHHHHHHhCCEEEEEEECCC
Confidence 10 00000 0013468999999998754332 112 2344567899999888776543
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.77 E-value=5.2e-09 Score=106.89 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCcEEEeCCCCCccCCC-CCCccHHHHHHHHHHHhhcC-------------CCeEEEEEecCCcccccHHHHHHHHHhCC
Q 007538 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVILAISPANQDIATSDAMKLAREVDP 205 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~-------------~~~iIL~v~~a~~d~~~~~~l~la~~~d~ 205 (599)
..+++|||||+...... ..-..+...+......|++. ++++++++.|....+...+ ..+.+.+.+
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 57899999998532110 00112333333333355433 2335555555443343333 456666653
Q ss_pred CCCceEEEeccCCCCCCCCc--HHHHHhCcccccCCCeEEEEcCChhhhccCCCHHHHHHHHH
Q 007538 206 TGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKER 266 (599)
Q Consensus 206 ~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~ 266 (599)
..++++|+||.|+...... ..+.+.......+..|+.+++.++ ++++.+..+.....+.
T Consensus 155 -~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp -TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred -cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 5689999999999864321 111122222334567888888888 8888776665554443
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.76 E-value=1.3e-10 Score=129.47 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc--------ccccHHHHHHHHHhCCCCC-c
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--------DIATSDAMKLAREVDPTGE-R 209 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~--------d~~~~~~l~la~~~d~~g~-r 209 (599)
...++||||||..+.. ..+..++..+|++||+|+.... ...+.+.+.++... +. +
T Consensus 254 ~~~i~iiDTPGh~~f~-------------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~ 317 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFI-------------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISE 317 (592)
T ss_dssp -----CCEEESSSEEE-------------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCC
T ss_pred CeEEEEEECCChHHHH-------------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCe
Confidence 4679999999975421 1123456789998887765432 11233344444443 45 4
Q ss_pred eEEEeccCCCCCCCCcH----HHHHhCcc-cccC-----CCeEEEEcCChhhhccC
Q 007538 210 TFGVLTKLDLMDKGTNA----LDVLEGRS-YRLQ-----HPWVGIVNRSQADINRN 255 (599)
Q Consensus 210 ti~VltK~Dl~~~~~~~----~~~~~~~~-~~l~-----~g~~~v~~~s~~~i~~~ 255 (599)
+|+|+||+|+.+..... .+.+.... ..++ ..|+.+++.++.++.+.
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~ 373 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSC
T ss_pred EEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccc
Confidence 89999999998632211 11111111 1122 25788999988887653
No 188
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.75 E-value=1.7e-08 Score=107.20 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=46.5
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc-cHHHHHHHHHhCCCCCc-eEEEec
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-TSDAMKLAREVDPTGER-TFGVLT 215 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~-~~~~l~la~~~d~~g~r-ti~Vlt 215 (599)
....++||||||. +.+...+..+++.+|++||+++..+.... +.+.+.+++. .+.+ .++|+|
T Consensus 64 ~~~~~~iiDtpG~-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~---~~vp~iivviN 127 (397)
T 1d2e_A 64 AARHYAHTDCPGH-------------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ---IGVEHVVVYVN 127 (397)
T ss_dssp SSCEEEEEECSSH-------------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CCeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 3467999999997 33455667889999999887765443221 2233344443 3566 689999
Q ss_pred cCCCCC
Q 007538 216 KLDLMD 221 (599)
Q Consensus 216 K~Dl~~ 221 (599)
|+|+.+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999985
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.72 E-value=1.3e-08 Score=118.60 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=59.5
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-ccHHHHHHHHHhCCCCCc-eEEEec
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAMKLAREVDPTGER-TFGVLT 215 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~~~~l~la~~~d~~g~r-ti~Vlt 215 (599)
....++||||||. +.+...+..+++.+|++||+++..+... .+.+.+.+++.. +.+ +|+|+|
T Consensus 357 ~~~kI~IIDTPGH-------------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l---gIP~IIVVIN 420 (1289)
T 3avx_A 357 PTRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV---GVPYIIVFLN 420 (1289)
T ss_dssp SSCEEEEEECCCH-------------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH---TCSCEEEEEE
T ss_pred CCEEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc---CCCeEEEEEe
Confidence 3567999999997 3445667778999999988776544322 233444555543 566 789999
Q ss_pred cCCCCCCCCc-------HHHHHhCccc-ccCCCeEEEEcCCh
Q 007538 216 KLDLMDKGTN-------ALDVLEGRSY-RLQHPWVGIVNRSQ 249 (599)
Q Consensus 216 K~Dl~~~~~~-------~~~~~~~~~~-~l~~g~~~v~~~s~ 249 (599)
|+|+.+.... ..+++..... ....+++.+++.++
T Consensus 421 KiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG 462 (1289)
T 3avx_A 421 KCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKA 462 (1289)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTT
T ss_pred ecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccC
Confidence 9999863211 1112211111 11356888888876
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.69 E-value=9.1e-09 Score=116.75 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...++||||||..+. ...+..+++.+|++|++++..+ .. ........+.+...+.+.++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvDa~~-g~-~~~~~~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLDAQS-GV-EPQTETVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEETTT-BS-CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEECCCC-CC-cHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 467999999998542 2335677888999988776544 32 22222333344445789999999999
Q ss_pred CCCC
Q 007538 219 LMDK 222 (599)
Q Consensus 219 l~~~ 222 (599)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 191
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.68 E-value=7.8e-08 Score=109.19 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=48.1
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl 219 (599)
..++||||||..+ +...+..+++.+|++|+++++.+ .. ........+.....+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvDa~~-gv-~~qt~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVYCAVG-GV-QPQSETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEEeCCC-CC-cHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 6799999999843 34567778899999988776554 32 222333444444557899999999999
Q ss_pred CCC
Q 007538 220 MDK 222 (599)
Q Consensus 220 ~~~ 222 (599)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 192
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=3.6e-08 Score=104.53 Aligned_cols=82 Identities=13% Similarity=0.264 Sum_probs=49.3
Q ss_pred CCcEEEeCCCCCccCCCC-CCcc----HHHHHHHHHHHhhc---------C--CCeEEEEEecCCcccccHHHHHHHHHh
Q 007538 140 VNLTLIDLPGLTKVAVEG-QPDT----IVEDIESMVRSYVE---------K--PNSVILAISPANQDIATSDAMKLAREV 203 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~-q~~~----~~~~i~~~~~~yi~---------~--~~~iIL~v~~a~~d~~~~~~l~la~~~ 203 (599)
+.++++|+||+....... .-.. +..++......|.. . .|++++++.+++.++.. ..+.+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~-~Dieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKS-LDLVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CH-HHHHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCH-HHHHHHHHH
Confidence 478999999996532110 0001 22344444455431 1 23567888888777743 446788888
Q ss_pred CCCCCceEEEeccCCCCCCC
Q 007538 204 DPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 204 d~~g~rti~VltK~Dl~~~~ 223 (599)
. .+.++|+|+||+|.+.+.
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHH
T ss_pred h-hCCCEEEEEcchhccchH
Confidence 7 688999999999998654
No 193
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.68 E-value=1.8e-08 Score=114.23 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...++||||||..+ +...+..+++.+|++|+++++.+... .......+.+...+.+.++|+||+|
T Consensus 76 ~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVvDa~~g~~--~~t~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVD-------------FTIEVERSMRVLDGAIVVFDSSQGVE--PQSETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTT-------------CHHHHHHHHHHCSEEEEEEETTTCSC--HHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccc-------------hHHHHHHHHHHCCEEEEEEECCCCcc--hhhHHHHHHHHHcCCCEEEEEECCC
Confidence 46799999999843 24556778889999988776554322 2222233333345789999999999
Q ss_pred CCCC
Q 007538 219 LMDK 222 (599)
Q Consensus 219 l~~~ 222 (599)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9854
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.65 E-value=1.2e-08 Score=115.43 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
....|+|+|+.++|||||+++|++........|.+. .+..+.+.....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~------------------------~g~~~~d~~~~e-------- 55 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE------------------------EGTTTTDYTPEA-------- 55 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG------------------------GTCCSSCCSHHH--------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceec------------------------CCcccccCCHHH--------
Confidence 456899999999999999999996532100111000 011111111100
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~ 196 (599)
...| ..+...... +.. ....++||||||..+ +...+..+++.+|.+++++++.+ .. ....
T Consensus 56 ~~~g--iti~~~~~~--~~~-~~~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~ilVvD~~~-g~-~~qt 115 (665)
T 2dy1_A 56 KLHR--TTVRTGVAP--LLF-RGHRVFLLDAPGYGD-------------FVGEIRGALEAADAALVAVSAEA-GV-QVGT 115 (665)
T ss_dssp HHTT--SCCSCEEEE--EEE-TTEEEEEEECCCSGG-------------GHHHHHHHHHHCSEEEEEEETTT-CS-CHHH
T ss_pred HhcC--CeEEecceE--Eee-CCEEEEEEeCCCccc-------------hHHHHHHHHhhcCcEEEEEcCCc-cc-chhH
Confidence 0111 223222333 222 245789999999843 24567788889999988877433 33 2222
Q ss_pred HHHHHHhCCCCCceEEEeccCCCC
Q 007538 197 MKLAREVDPTGERTFGVLTKLDLM 220 (599)
Q Consensus 197 l~la~~~d~~g~rti~VltK~Dl~ 220 (599)
..+.+.+...+.+.++|+||+|+.
T Consensus 116 ~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHccCCEEEEecCCchh
Confidence 233343434578999999999997
No 195
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.65 E-value=2.6e-08 Score=104.68 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
.-.+|++||.+|+|||||+|+|+|..+.......||..|..-.+.- ++.. + ..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v--------------~~~r---~----~~l~~--- 76 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV--------------PDER---F----DFLCQ--- 76 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC--------------CCHH---H----HHHHH---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE--------------CCcc---c----eeecc---
Confidence 4568999999999999999999998763444456776663322100 0000 0 00000
Q ss_pred hhcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 007538 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a 187 (599)
.... .. .....++||||||+...... .+.+.+....|++.+|+|++|++..
T Consensus 77 -~~~p--------~~-----~~~~~i~lvDtpGl~~~as~------~~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 77 -YHKP--------AS-----KIPAFLNVVDIAGLVKGAHN------GQGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp -HHCC--------SE-----EECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred -ccCc--------cc-----ccccccEEEECCCcccccch------hhHHHHHHHHHHHhcCeEEEEEecC
Confidence 0000 00 00245899999999764322 1333445678999999988877543
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.64 E-value=2.4e-08 Score=103.84 Aligned_cols=101 Identities=13% Similarity=0.051 Sum_probs=53.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||+... . . .....+|.+++++++...+. .+ .+.. .. .+.+.++|+||+|
T Consensus 148 ~~~i~liDTpG~~~~------~---~-------~~~~~aD~vl~Vvd~~~~~~-~~-~l~~-~~---~~~p~ivv~NK~D 205 (341)
T 2p67_A 148 GYDVVIVETVGVGQS------E---T-------EVARMVDCFISLQIAGGGDD-LQ-GIKK-GL---MEVADLIVINKDD 205 (341)
T ss_dssp TCSEEEEEEECCTTH------H---H-------HHHTTCSEEEEEECC-------C-CCCH-HH---HHHCSEEEECCCC
T ss_pred CCCEEEEeCCCccch------H---H-------HHHHhCCEEEEEEeCCccHH-HH-HHHH-hh---hcccCEEEEECCC
Confidence 568999999998541 1 1 12478998877776543221 00 0000 00 1357899999999
Q ss_pred CCCCCCcHHH---HHhCc---ccc----cCCCeEEEEcCChhhhccCCCHHHHH
Q 007538 219 LMDKGTNALD---VLEGR---SYR----LQHPWVGIVNRSQADINRNIDMIVAR 262 (599)
Q Consensus 219 l~~~~~~~~~---~~~~~---~~~----l~~g~~~v~~~s~~~i~~~~~~~~~~ 262 (599)
+.+.. +... .+... ..+ ....++.+++.++.+++++++.+...
T Consensus 206 l~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 206 GDNHT-NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp TTCHH-HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred CCChH-HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 97532 1111 11110 000 12345677777777777666655543
No 197
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.63 E-value=6.6e-09 Score=109.16 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 47999999999999999999986
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.56 E-value=2.5e-08 Score=115.46 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
...++||||||..+. ...+..|++.+|++|++++..+ .... ......+.+...+.+.++|+||+|
T Consensus 97 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVvDa~~-g~~~-qt~~~~~~~~~~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDTIE-GVCV-QTETVLRQALGERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEEETTT-BSCH-HHHHHHHHHHHTTCEEEEEEECHH
T ss_pred CceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEEeCCC-CCCH-HHHHHHHHHHHcCCCeEEEEECCC
Confidence 356899999998542 3356778899999988776544 3222 222333444445789999999999
Q ss_pred CC
Q 007538 219 LM 220 (599)
Q Consensus 219 l~ 220 (599)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 87
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.55 E-value=2.2e-07 Score=96.30 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-..|+++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4557999999999999999999974
No 200
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.54 E-value=2.1e-08 Score=105.24 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.+|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 479999999999999999999874
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.49 E-value=1.6e-07 Score=93.31 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~ 59 (599)
..+.++++|..||||||++++|.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 56688999999999999999998
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.45 E-value=1.9e-08 Score=97.26 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|.|+|+|.+|||||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999975
No 203
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.42 E-value=4.6e-07 Score=90.87 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=48.6
Q ss_pred CCcEEEeCCCCCccCCCCCCc-cHHHHHHHHHHHh--------------hcCCCeEEEEEecCCcccccHHHHHHHHHhC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPD-TIVEDIESMVRSY--------------VEKPNSVILAISPANQDIATSDAMKLAREVD 204 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~-~~~~~i~~~~~~y--------------i~~~~~iIL~v~~a~~d~~~~~~l~la~~~d 204 (599)
+.++++|+||+.......+.. .+.+.+......+ +..+.+.++++++....+...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 578999999997643322111 1222222222222 2224777777777766664433 56777776
Q ss_pred CCCCceEEEeccCCCCCCC
Q 007538 205 PTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 205 ~~g~rti~VltK~Dl~~~~ 223 (599)
.. .++|.|+||+|.+...
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 65 8999999999998654
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.38 E-value=6.4e-07 Score=97.25 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEeccC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTKL 217 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~r-ti~VltK~ 217 (599)
..++.||||||..... ......+.... .++ .++.+++++++ .... ++...++.+... .+ +++|+||+
T Consensus 183 ~~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~vllVvDa-~~g~---~~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNIVYVMDA-SIGQ---ACEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TCCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEEEEEEET-TCCT---THHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceEEEEEec-cccc---cHHHHHHHHHhh-cCceEEEEeCC
Confidence 4689999999986521 11222232222 233 78888666654 4332 234445444332 45 58999999
Q ss_pred CCCCCCCcHHH
Q 007538 218 DLMDKGTNALD 228 (599)
Q Consensus 218 Dl~~~~~~~~~ 228 (599)
|....+..+..
T Consensus 251 D~~~~~g~~l~ 261 (504)
T 2j37_W 251 DGHAKGGGALS 261 (504)
T ss_dssp TSCCCCTHHHH
T ss_pred ccccchHHHHH
Confidence 99866544444
No 205
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=3e-07 Score=96.80 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC-CcccccccccccEE
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLV 77 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~-lP~~~~~~Tr~p~~ 77 (599)
.-.+|++||.+|||||||+|+|+|..+ .......||+.|..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 456899999999999999999999875 34455667777743
No 206
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.31 E-value=5e-07 Score=99.62 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=53.8
Q ss_pred CcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh
Q 007538 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV 203 (599)
Q Consensus 124 ~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~ 203 (599)
.+....+.+.. +...++||||||..+-. .-+.+.++-.|+.|++|+. ..+. ......+.+..
T Consensus 87 TI~s~~~~~~~---~~~~iNlIDTPGHvDF~-------------~Ev~raL~~~DgAvlVvda-~~GV-~~qT~~v~~~a 148 (548)
T 3vqt_A 87 SVTTSVMQFPY---RDRVVNLLDTPGHQDFS-------------EDTYRVLTAVDSALVVIDA-AKGV-EAQTRKLMDVC 148 (548)
T ss_dssp -CTTTEEEEEE---TTEEEEEECCCCGGGCS-------------HHHHHHHHSCSEEEEEEET-TTBS-CHHHHHHHHHH
T ss_pred cEeeceEEEEE---CCEEEEEEeCCCcHHHH-------------HHHHHHHHhcCceEEEeec-CCCc-ccccHHHHHHH
Confidence 34455555432 34679999999986532 2355667789999887754 4444 23334455666
Q ss_pred CCCCCceEEEeccCCCCCC
Q 007538 204 DPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 204 d~~g~rti~VltK~Dl~~~ 222 (599)
...+.|.|+++||+|....
T Consensus 149 ~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 149 RMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHTTCCEEEEEECTTSCCC
T ss_pred HHhCCceEEEEecccchhc
Confidence 6678999999999998644
No 207
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.26 E-value=2.4e-06 Score=94.33 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
..+.|+|||.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 566899999999999999999999863
No 208
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.24 E-value=1.7e-06 Score=87.26 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
..+|++||.+|+|||||+|+|+|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 45899999999999999999999864
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.23 E-value=4.8e-06 Score=88.22 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (599)
.+.|+|+|+.|||||||+|+|+|.. +...|.++-.-..+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~--~p~~GsI~~~g~~~--------------------------------------- 107 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG--NEEEGAAKTGVVEV--------------------------------------- 107 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC--TTSTTSCCCCC------------------------------------------
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC--CccCceEEECCeec---------------------------------------
Confidence 3479999999999999999999963 22222222100000
Q ss_pred hcCCCCCcCCccEEEEEecCCCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 007538 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (599)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l 197 (599)
+...+. ...+..++++++|+||+.... ....+.++.+ -+...+..+. + +... . ....+
T Consensus 108 --------t~~~~v--~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~~~~~-l-S~G~-~-~kqrv 165 (413)
T 1tq4_A 108 --------TMERHP--YKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYDFFII-I-SATR-F-KKNDI 165 (413)
T ss_dssp ---------CCCEE--EECSSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCSEEEE-E-ESSC-C-CHHHH
T ss_pred --------ceeEEe--ccccccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccCCeEE-e-CCCC-c-cHHHH
Confidence 000011 112334689999999986421 1122222221 1333354433 3 3332 2 34445
Q ss_pred HHHHHhCCCCCceEEEeccCCCC
Q 007538 198 KLAREVDPTGERTFGVLTKLDLM 220 (599)
Q Consensus 198 ~la~~~d~~g~rti~VltK~Dl~ 220 (599)
.+++.+...+.|+++|+||+|+.
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCccc
Confidence 57777766789999999999974
No 210
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.22 E-value=5e-06 Score=88.51 Aligned_cols=80 Identities=26% Similarity=0.334 Sum_probs=49.3
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||..... ......+..+ . .+..++.++||+++ .. .+++...++.+.+....+.+|+||+|
T Consensus 182 ~~DvVIIDTaGrl~~d-----~~lm~el~~i-~-~~~~pd~vlLVvDA-~~---gq~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKED-----KALIEEMKQI-S-NVIHPHEVILVIDG-TI---GQQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp TCSEEEEECCCCSSCC-----HHHHHHHHHH-H-HHHCCSEEEEEEEG-GG---GGGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred CCCEEEEECCCcccch-----HHHHHHHHHH-H-HhhcCceEEEEEeC-CC---chhHHHHHHHHHhhCCCeEEEEECCC
Confidence 4789999999975421 1122223222 2 23357877666554 33 24456666777666667889999999
Q ss_pred CCCCCCcHHHH
Q 007538 219 LMDKGTNALDV 229 (599)
Q Consensus 219 l~~~~~~~~~~ 229 (599)
....+..+..+
T Consensus 251 ~~~~gG~~ls~ 261 (443)
T 3dm5_A 251 GSAKGGGALSA 261 (443)
T ss_dssp SCSSHHHHHHH
T ss_pred CcccccHHHHH
Confidence 98766544444
No 211
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.21 E-value=5.2e-07 Score=87.37 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
..|+|+|+|.+|||||||+++|++..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 568999999999999999999997643
No 212
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.14 E-value=1e-06 Score=99.02 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=48.2
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
....++||||||..+- ..-+...++-+|+.|++|+ |..+...+ ...+.+.+...+.|.|+++||+
T Consensus 65 ~~~~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVVD-a~~GV~~q-T~~v~~~a~~~~lp~i~~INKm 129 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLIS-AKDGVQAQ-TRILFHALRKMGIPTIFFINKI 129 (638)
T ss_dssp SSCBCCCEECCCSSST-------------HHHHHHHHTTCSEEECCEE-SSCTTCSH-HHHHHHHHHHHTCSCEECCEEC
T ss_pred CCEEEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEEe-CCCCCcHH-HHHHHHHHHHcCCCeEEEEecc
Confidence 4567999999998552 3345667788999988665 44444332 2334444555578899999999
Q ss_pred CCCCCC
Q 007538 218 DLMDKG 223 (599)
Q Consensus 218 Dl~~~~ 223 (599)
|.....
T Consensus 130 Dr~~a~ 135 (638)
T 3j25_A 130 DQNGID 135 (638)
T ss_dssp CSSSCC
T ss_pred ccccCC
Confidence 987543
No 213
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.12 E-value=2e-06 Score=97.85 Aligned_cols=137 Identities=12% Similarity=0.180 Sum_probs=76.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCCCCCcccccccccccEEEEEEecCCCCccceeeecCCCCcccChHHHHHHHHHHHh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (599)
+...|+|||+..+|||||.++|+-.. |...+.. .+. .+..++|+.+.+ .
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~~g-~v~-----------------~~~~~~D~~~~E------~- 60 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHKLG-EVH-----------------DGAATTDWMVQE------Q- 60 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHHC------------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCcCc-eec-----------------CCCccCCChHHH------H-
Confidence 45579999999999999999997321 1111111 000 011122222211 1
Q ss_pred hhcCCCCCcCCccEEEEEecCC----CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 007538 117 RVTGKTKQISPIPIHLSIYSPN----VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (599)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~----~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~ 192 (599)
.++-.+....+.+...+.. ...++||||||..+- ..-+...++-.|..|++|+. ..+.
T Consensus 61 ---eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-------------~~Ev~~aLr~~DgavlvVDa-veGV- 122 (709)
T 4fn5_A 61 ---ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------------TIEVERSLRVLDGAVVVFCG-TSGV- 122 (709)
T ss_dssp ----------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-------------HHHHHHHHHHCSEEEEEEET-TTCS-
T ss_pred ---HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-------------HHHHHHHHHHhCeEEEEEEC-CCCC-
Confidence 1223344556665543322 346899999998653 33355567778999887654 4444
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCCCCC
Q 007538 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (599)
Q Consensus 193 ~~~~l~la~~~d~~g~rti~VltK~Dl~~~ 222 (599)
......+.+.....+.|.|+|+||+|....
T Consensus 123 ~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 123 EPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred chhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 333344555566668899999999998643
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.97 E-value=8.9e-06 Score=86.86 Aligned_cols=79 Identities=27% Similarity=0.281 Sum_probs=45.9
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHH-HhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCC-CceEEEec
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFGVLT 215 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~-~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g-~rti~Vlt 215 (599)
...++.||||||.... ....+..+.. ..+..++.+++++. +... +++...++...+.- ..+.+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d~vllVvd-a~~g---~~~~~~~~~~~~~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPDEIILVID-GTIG---QQAGIQAKAFKEAVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCSEEEEEEE-GGGG---GGHHHHHHHHHTTSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCcceeEEee-cccc---HHHHHHHHHHhhcccCCeEEEEe
Confidence 3578999999998542 1122333311 12236888766654 4333 24455566655433 33889999
Q ss_pred cCCCCCCCCcHHH
Q 007538 216 KLDLMDKGTNALD 228 (599)
Q Consensus 216 K~Dl~~~~~~~~~ 228 (599)
|+|....+..+..
T Consensus 247 K~D~~~~~g~~l~ 259 (432)
T 2v3c_C 247 KLDGSAKGGGALS 259 (432)
T ss_dssp CSSSCSTTHHHHH
T ss_pred CCCCccchHHHHH
Confidence 9998765543333
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.90 E-value=2.5e-05 Score=83.13 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=47.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||....+. .......+..+. ..+ .++.++||+++.. . +++...++.+.+....+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd~vlLVlDa~~-g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPDDVILVIDASI-G---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCSEEEEEEEGGG-G---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCcceEEEEeCcc-c---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 57899999999743111 112233333322 222 5677767665443 2 3344555555544456889999999
Q ss_pred CCCCCCcHHHH
Q 007538 219 LMDKGTNALDV 229 (599)
Q Consensus 219 l~~~~~~~~~~ 229 (599)
....+..+..+
T Consensus 250 ~~a~~G~als~ 260 (433)
T 3kl4_A 250 GTAKGGGALSA 260 (433)
T ss_dssp GCSCHHHHHHH
T ss_pred ccccchHHHHH
Confidence 98665444443
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.90 E-value=6.9e-06 Score=81.84 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (599)
.+|++||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999999865
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.72 E-value=8.1e-05 Score=75.71 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=48.9
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl 219 (599)
.++.++||+|....... .+.....+-..+.+.....|+.++|++++... ++.+..++.+......+++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~~-~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~----~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHN-LMEELKKVKRAIAKADPEEPKEVWLVLDAVTG----QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCHH-HHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC----THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCEEEecCCCCCCchHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH----HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 45679999998542210 11222222233444556678877776654432 33444444443333468999999998
Q ss_pred CCCCCcHHHHH
Q 007538 220 MDKGTNALDVL 230 (599)
Q Consensus 220 ~~~~~~~~~~~ 230 (599)
...+..+..+.
T Consensus 260 ~a~gg~~l~i~ 270 (304)
T 1rj9_A 260 TAKGGVLIPIV 270 (304)
T ss_dssp SCCCTTHHHHH
T ss_pred cccccHHHHHH
Confidence 77666655543
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.59 E-value=0.00056 Score=73.55 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=48.6
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHH---HHHHhhc-CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIES---MVRSYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~---~~~~yi~-~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~Vl 214 (599)
..++.||||+|..... ......+.. .++.... .++.++|++++. . .++++..++.+...-.-+.+|+
T Consensus 375 ~~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDat-t---Gq~al~~ak~f~~~~~itgvIl 445 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS-T---GQNAVSQAKLFHEAVGLTGITL 445 (503)
T ss_dssp TCSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG-G---THHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCc-c---cHHHHHHHHHHHhhcCCCEEEE
Confidence 3568899999985421 112222222 2222222 366676765543 2 3455666666554445678999
Q ss_pred ccCCCCCCCCcHHHHHh
Q 007538 215 TKLDLMDKGTNALDVLE 231 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~~ 231 (599)
||.|-...+..+..++.
T Consensus 446 TKLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 446 TKLDGTAKGGVIFSVAD 462 (503)
T ss_dssp ECGGGCSCCTHHHHHHH
T ss_pred EcCCCcccccHHHHHHH
Confidence 99998777666666543
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.54 E-value=0.00036 Score=71.64 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=48.8
Q ss_pred CCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCC
Q 007538 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (599)
Q Consensus 140 ~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl 219 (599)
.++.++||+|..... ......+..+.+.. .+|-.++++++.. .++.+..++.+.....-+++|+||.|.
T Consensus 212 ~d~vliDtaG~~~~~-----~~l~~eL~~i~ral--~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETN-----RNLMDEMKKIARVT--KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTT-----TCHHHHHHHHHHHH--CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHH-----HHHHHHHHHHHHHh--cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 467789999985432 22444444433322 3666666665433 246666676665444678999999998
Q ss_pred CCCCCcHHHHH
Q 007538 220 MDKGTNALDVL 230 (599)
Q Consensus 220 ~~~~~~~~~~~ 230 (599)
...+..+..+.
T Consensus 281 ~a~~G~~l~~~ 291 (328)
T 3e70_C 281 DARGGAALSIS 291 (328)
T ss_dssp CSCCHHHHHHH
T ss_pred ccchhHHHHHH
Confidence 66555444443
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.49 E-value=0.00012 Score=78.05 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=44.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHH-HHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV-RSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~-~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++.||||||..... ...+..+. ..++..++.+++|+.+. .. +++...++.+.+.-.-+-+|+||+
T Consensus 183 ~~D~VIIDTpG~l~~~--------~~l~~~L~~~~~~~~p~~vllVvda~-~g---~~~~~~~~~f~~~l~i~gvVlnK~ 250 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVD--------EAMMDEIKQVHASINPVETLFVVDAM-TG---QDAANTAKAFNEALPLTGVVLTKV 250 (433)
T ss_dssp TCSEEEEECCCCCTTC--------HHHHHHHHHHHHHSCCSEEEEEEETT-BC---TTHHHHHHHHHHHSCCCCEEEECT
T ss_pred CCCEEEEECCCccccc--------HHHHHHHHHHHHhhcCcceeEEeecc-hh---HHHHHHHHHHhccCCCeEEEEecC
Confidence 4689999999975421 12222221 13355788887766543 32 344555555543222245789999
Q ss_pred CCCCCCCcHHH
Q 007538 218 DLMDKGTNALD 228 (599)
Q Consensus 218 Dl~~~~~~~~~ 228 (599)
|....+..+..
T Consensus 251 D~~~~~g~~l~ 261 (433)
T 2xxa_A 251 DGDARGGAALS 261 (433)
T ss_dssp TSSSCCTHHHH
T ss_pred CCCccHHHHHH
Confidence 98765543443
No 221
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.48 E-value=0.00013 Score=77.83 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-.|+|+|.+++|||+|||+|+|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 446899999999999999999974
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.47 E-value=0.00035 Score=70.70 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
..++.||||||...... .+.....+..+ . .+..++.+++++.+. . .++++..++.+.+.-.-+.+|+||+|
T Consensus 180 ~~D~ViIDTpg~~~~~~---~~~l~~el~~i-~-~~~~~d~vllVvda~-~---g~~~~~~~~~~~~~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGE---EAALLEEMKNI-Y-EAIKPDEVTLVIDAS-I---GQKAYDLASKFNQASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTC---HHHHHHHHHHH-H-HHHCCSEEEEEEEGG-G---GGGHHHHHHHHHHTCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCccccc---HHHHHHHHHHH-H-HHhcCCEEEEEeeCC-c---hHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 46899999999854100 00111122221 1 233678887776543 2 24455666665543233778999999
Q ss_pred CCCCCCcHHHH
Q 007538 219 LMDKGTNALDV 229 (599)
Q Consensus 219 l~~~~~~~~~~ 229 (599)
....+..+..+
T Consensus 251 ~~~~~g~~~~~ 261 (297)
T 1j8m_F 251 GTAKGGGALSA 261 (297)
T ss_dssp GCTTHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 87554433343
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.39 E-value=7.9e-05 Score=75.83 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=45.9
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHH---hhc-CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS---YVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~---yi~-~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~Vl 214 (599)
.+++.|+||||.... .....+.+..+..- .+. .++.++|++. +.. .++++..++.......-+-+|+
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~~vllVld-a~t---~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPHETLLVID-ATT---GQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEE-GGG---HHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCcEEEEEEE-CCC---CHHHHHHHHHHHhcCCCCEEEE
Confidence 478999999996321 11122223222211 122 4777766554 432 2445555555443334566789
Q ss_pred ccCCCCCCCCcHHHHH
Q 007538 215 TKLDLMDKGTNALDVL 230 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~ 230 (599)
||.|....+..+..+.
T Consensus 257 Tk~D~~~~gG~~l~~~ 272 (306)
T 1vma_A 257 TKLDGTAKGGITLAIA 272 (306)
T ss_dssp ECGGGCSCTTHHHHHH
T ss_pred eCCCCccchHHHHHHH
Confidence 9999887776655554
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.20 E-value=0.0022 Score=64.79 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.|+++|.+||||||++..|.+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999875
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.13 E-value=0.0052 Score=62.76 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=46.9
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHH---HHHHHhh-cCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIE---SMVRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~---~~~~~yi-~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~Vl 214 (599)
..++.||||||...... .....+. ..+...+ ..++.+++++.. .. .++++..++...+...-+=+|+
T Consensus 191 ~yD~VIIDTpg~l~~~~-----~l~~eL~~~~~vi~~~~p~~~d~vllVl~a-~~---~~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKT-----NLMAELEKMNKIIQQVEKSAPHEVLLVIDA-TT---GQNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGHH-----HHHHHHHHHHHHHHTTCTTCCSEEEEEEEG-GG---THHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCcccccH-----HHHHHHHHHHHHHhcccCCCCceEEEEEEC-CC---cHHHHHHHHHHhhcCCCcEEEE
Confidence 47899999999854210 0111111 1222122 237777666544 33 2566666777765444445789
Q ss_pred ccCCCCCCCCcHHHHH
Q 007538 215 TKLDLMDKGTNALDVL 230 (599)
Q Consensus 215 tK~Dl~~~~~~~~~~~ 230 (599)
||.|....+..+..+.
T Consensus 262 tk~d~~~~~g~~~~~~ 277 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIK 277 (320)
T ss_dssp ECGGGCSCTTHHHHHH
T ss_pred eCCCCCCchhHHHHHH
Confidence 9999876665555443
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.99 E-value=0.0017 Score=67.39 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=47.2
Q ss_pred CcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCC
Q 007538 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (599)
Q Consensus 141 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~ 220 (599)
+..++||.|+...... .+.++..+...+.+..+.+|+-++|+++ +.... +....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHH-HHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 4578999998543210 1111222223344455677887777777 44332 22222333332234689999999988
Q ss_pred CCCCcHHHHH
Q 007538 221 DKGTNALDVL 230 (599)
Q Consensus 221 ~~~~~~~~~~ 230 (599)
..+.....+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7776555554
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.0015 Score=69.24 Aligned_cols=79 Identities=29% Similarity=0.344 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHH-HhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~-~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++.||||||..... ...+.++.. ..+-.++.++|++.+. . .+++...++.+.+.-..+-+|+||.
T Consensus 180 ~~DvVIIDTaG~l~~d--------~~l~~el~~i~~~~~pd~vlLVvDa~-t---gq~av~~a~~f~~~l~i~GVIlTKl 247 (425)
T 2ffh_A 180 ARDLILVDTAGRLQID--------EPLMGELARLKEVLGPDEVLLVLDAM-T---GQEALSVARAFDEKVGVTGLVLTKL 247 (425)
T ss_dssp TCSEEEEECCCCSSCC--------HHHHHHHHHHHHHHCCSEEEEEEEGG-G---TTHHHHHHHHHHHHTCCCEEEEESG
T ss_pred CCCEEEEcCCCccccc--------HHHHHHHHHhhhccCCceEEEEEecc-c---hHHHHHHHHHHHhcCCceEEEEeCc
Confidence 4689999999975421 112222211 1122678777766543 2 3556666666554333467799999
Q ss_pred CCCCCCCcHHHH
Q 007538 218 DLMDKGTNALDV 229 (599)
Q Consensus 218 Dl~~~~~~~~~~ 229 (599)
|....+..+..+
T Consensus 248 D~~~~~g~alsi 259 (425)
T 2ffh_A 248 DGDARGGAALSA 259 (425)
T ss_dssp GGCSSCHHHHHH
T ss_pred CCcccHHHHHHH
Confidence 986555444443
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.93 E-value=0.002 Score=65.26 Aligned_cols=85 Identities=21% Similarity=0.278 Sum_probs=45.4
Q ss_pred CcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCC
Q 007538 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (599)
Q Consensus 141 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~ 220 (599)
+..++|+.|+...... .+.++..+...+.+..+.+|+-++|+++ +..... ....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD---~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLN---MLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGG---GHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcC---HHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 4578999998542210 0111222222233344567886677777 443332 2222333332234689999999987
Q ss_pred CCCCcHHHHH
Q 007538 221 DKGTNALDVL 230 (599)
Q Consensus 221 ~~~~~~~~~~ 230 (599)
..+.....+.
T Consensus 260 ~~~g~~l~~~ 269 (302)
T 3b9q_A 260 ARGGCVVSVV 269 (302)
T ss_dssp SCTHHHHHHH
T ss_pred CccChheehH
Confidence 6665555544
No 229
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.73 E-value=0.0004 Score=72.05 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---------ccHHHHHHHHHhCC----
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---------ATSDAMKLAREVDP---- 205 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~---------~~~~~l~la~~~d~---- 205 (599)
...+.+|||+|.- ..+.+...|.++++++|+|++.++.|- .-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQe-------------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQR-------------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSG-------------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCch-------------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 4678999999973 345667789999999999887766331 12344455544432
Q ss_pred CCCceEEEeccCCCC
Q 007538 206 TGERTFGVLTKLDLM 220 (599)
Q Consensus 206 ~g~rti~VltK~Dl~ 220 (599)
.+.++|+|+||.|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 368999999999985
No 230
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.64 E-value=0.0014 Score=68.21 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=44.5
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc---------cccHHHHHHHHHhC----C
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVD----P 205 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d---------~~~~~~l~la~~~d----~ 205 (599)
...+.+|||||. +..+.+...|.++++++|+|++.++.| -.-.++..+...+. .
T Consensus 200 ~~~l~i~Dt~Gq-------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccch-------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 467899999998 344667788999999999988766632 11233444444332 1
Q ss_pred CCCceEEEeccCCCC
Q 007538 206 TGERTFGVLTKLDLM 220 (599)
Q Consensus 206 ~g~rti~VltK~Dl~ 220 (599)
.+.++|+|+||+|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 367999999999986
No 231
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.63 E-value=0.00019 Score=72.90 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=58.9
Q ss_pred CcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---HHHHHHHHHhCCCCCceEEEeccC
Q 007538 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---SDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 141 ~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~---~~~l~la~~~d~~g~rti~VltK~ 217 (599)
.+.+||| .- ..+.+...|++++|++|+|++..+.+... ..++..++. .+.+.++|+||+
T Consensus 64 ~~~iwD~--qe-------------r~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~ 125 (301)
T 1u0l_A 64 SGVIENV--LH-------------RKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKM 125 (301)
T ss_dssp SEEEEEE--CC-------------CSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCG
T ss_pred eEEEEEE--cc-------------ccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHH
Confidence 7899999 21 11334557999999998887665443211 233333332 478999999999
Q ss_pred CCCCCCC--cHHHHHhCcccccCCCeEEEEcCChhhhccCC
Q 007538 218 DLMDKGT--NALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (599)
Q Consensus 218 Dl~~~~~--~~~~~~~~~~~~l~~g~~~v~~~s~~~i~~~~ 256 (599)
|+.+... +..+.... .... ..|+.+++.++.++++.+
T Consensus 126 DL~~~~~v~~~~~~~~~-~~~~-~~~~~~SAktg~gv~~lf 164 (301)
T 1u0l_A 126 DLYDEDDLRKVRELEEI-YSGL-YPIVKTSAKTGMGIEELK 164 (301)
T ss_dssp GGCCHHHHHHHHHHHHH-HTTT-SCEEECCTTTCTTHHHHH
T ss_pred HcCCchhHHHHHHHHHH-Hhhh-CcEEEEECCCCcCHHHHH
Confidence 9976432 01122111 0111 678999999888776543
No 232
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.61 E-value=0.0027 Score=64.04 Aligned_cols=81 Identities=27% Similarity=0.382 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~D 218 (599)
.+++.|+||||..... ......+..+... + .++.+++++. +.. .++++..++...+.-..+-+|+||.|
T Consensus 180 ~~D~viiDtpp~~~~d-----~~~~~~l~~~~~~-~-~~~~~~lv~~-~~~---~~~~~~~~~~~~~~~~i~givlnk~d 248 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID-----EPLMGELARLKEV-L-GPDEVLLVLD-AMT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (295)
T ss_dssp TCCEEEEECCCCSSCC-----HHHHHHHHHHHHH-H-CCSEEEEEEE-GGG---THHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred CCCEEEEeCCCCcccc-----HHHHHHHHHHhhh-c-CCCEEEEEEe-CCC---cHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 4789999999975421 1112222222221 2 5777766554 332 25555555555433233457899999
Q ss_pred CCCCCCcHHHHH
Q 007538 219 LMDKGTNALDVL 230 (599)
Q Consensus 219 l~~~~~~~~~~~ 230 (599)
....+..+..+.
T Consensus 249 ~~~~~g~~~~~~ 260 (295)
T 1ls1_A 249 GDARGGAALSAR 260 (295)
T ss_dssp GCSSCHHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 876655455544
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.33 E-value=0.0014 Score=66.43 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
-.++++|.+|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999974
No 234
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.27 E-value=0.002 Score=65.88 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=50.0
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---------cccccHHHHHHHHHhCC----
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---------QDIATSDAMKLAREVDP---- 205 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~---------~d~~~~~~l~la~~~d~---- 205 (599)
...+.+|||+|. +..+.+...|.++++++|+|++-+. ..-.-.+++.+...+..
T Consensus 166 ~v~l~iwDtgGQ-------------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQ-------------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCS-------------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCc-------------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 467899999998 6678888999999999999884331 11112345555554432
Q ss_pred CCCceEEEeccCCCCC
Q 007538 206 TGERTFGVLTKLDLMD 221 (599)
Q Consensus 206 ~g~rti~VltK~Dl~~ 221 (599)
.+.++++|+||+|+..
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 4679999999999864
No 235
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.01 E-value=0.0091 Score=61.30 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=51.0
Q ss_pred CCCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc---------cccHHHHHHHHHh----C
Q 007538 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREV----D 204 (599)
Q Consensus 138 ~~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d---------~~~~~~l~la~~~----d 204 (599)
....+.+|||+|. +..+.+...|.++++++|+|++.+..| -...+++.+...+ .
T Consensus 159 ~~v~l~iwDtaGQ-------------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQ-------------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSC-------------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCc-------------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 3577999999998 677889999999999999988765211 1123344443333 2
Q ss_pred CCCCceEEEeccCCCCC
Q 007538 205 PTGERTFGVLTKLDLMD 221 (599)
Q Consensus 205 ~~g~rti~VltK~Dl~~ 221 (599)
..+.++++|+||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 24679999999999864
No 236
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.53 E-value=0.0028 Score=64.17 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=49.7
Q ss_pred HHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCC-cHHHHHhCcccccCCCeEEEEc
Q 007538 168 SMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVN 246 (599)
Q Consensus 168 ~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~-~~~~~~~~~~~~l~~g~~~v~~ 246 (599)
.+.+.|++++|.+++|++..+.++.....-++...+...+.+.++|+||+|+.++.. ...+.+......++..++.+++
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA 150 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSA 150 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEEC
Confidence 344469999999888776554433222211222223335789999999999986431 0011111111123456777888
Q ss_pred CChhhhccC
Q 007538 247 RSQADINRN 255 (599)
Q Consensus 247 ~s~~~i~~~ 255 (599)
.++.+++++
T Consensus 151 ~~g~gi~~L 159 (302)
T 2yv5_A 151 KTGEGIDEL 159 (302)
T ss_dssp TTCTTHHHH
T ss_pred CCCCCHHHH
Confidence 877776543
No 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.39 E-value=0.023 Score=57.33 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.++++|..|||||||+|+|. .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 368999999999999999999 5
No 238
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.03 E-value=0.016 Score=60.93 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=48.8
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc---------cccHHHHHHHHHhC----C
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVD----P 205 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d---------~~~~~~l~la~~~d----~ 205 (599)
...+.||||+|. +..+.+...|.++++++|+|++.++.| -.-.++..+...+. .
T Consensus 216 ~v~l~iwDtaGQ-------------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQ-------------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCS-------------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchh-------------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 467899999998 334667788999999999988766521 11233444444432 2
Q ss_pred CCCceEEEeccCCCCC
Q 007538 206 TGERTFGVLTKLDLMD 221 (599)
Q Consensus 206 ~g~rti~VltK~Dl~~ 221 (599)
.+.++|+|+||+|+..
T Consensus 283 ~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 283 RTISVILFLNKQDLLA 298 (402)
T ss_dssp SSCCEEEEEECHHHHH
T ss_pred CCCeEEEEEEChhhhh
Confidence 4678999999999853
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.01 E-value=0.0089 Score=56.47 Aligned_cols=24 Identities=13% Similarity=0.445 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-..|+|+|++|||||||+++|.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999975
No 240
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.98 E-value=0.028 Score=59.71 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (599)
.-.|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3457799999999999999775
No 241
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.82 E-value=0.014 Score=56.68 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999996
No 242
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.79 E-value=0.011 Score=55.44 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=25.6
Q ss_pred EEEECCCCCCHHHHHHHhhCCC--CCccccccccccc
Q 007538 41 VAVVGGQSSGKSSVLESVVGRD--FLPRGSGIVTRRP 75 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~--~lP~~~~~~Tr~p 75 (599)
|||+|++|||||||+++|.... -+......+||-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 1233344566665
No 243
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.77 E-value=0.087 Score=49.14 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=39.1
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC--CCCceEEEecc
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP--TGERTFGVLTK 216 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~--~g~rti~VltK 216 (599)
..++.|||+||... . .+...+..+|.+|+++.+...+......++.++.+.. .+.+..+|+|+
T Consensus 75 ~yD~viiD~~~~~~-----------~----~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~ 139 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----------V----ITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITR 139 (206)
T ss_dssp TSSEEEEECCSSSS-----------H----HHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECS
T ss_pred CCCEEEEECCCCCC-----------H----HHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 47899999998642 1 2233445588887776654433112233344444331 13466899999
Q ss_pred CCCC
Q 007538 217 LDLM 220 (599)
Q Consensus 217 ~Dl~ 220 (599)
+|..
T Consensus 140 ~~~~ 143 (206)
T 4dzz_A 140 KIEM 143 (206)
T ss_dssp BCTT
T ss_pred cCCC
Confidence 9854
No 244
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.66 E-value=0.015 Score=56.09 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|.|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.66 E-value=0.013 Score=54.28 Aligned_cols=22 Identities=9% Similarity=0.508 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 246
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.63 E-value=0.018 Score=57.00 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999996
No 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.63 E-value=0.021 Score=55.78 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.58 E-value=0.013 Score=55.11 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|+.|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999984
No 249
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.58 E-value=0.018 Score=55.06 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 250
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.57 E-value=0.017 Score=56.82 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 251
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.56 E-value=0.022 Score=58.89 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|.+|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999974
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.55 E-value=0.015 Score=53.96 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 253
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.54 E-value=0.018 Score=57.32 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999996
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.51 E-value=0.023 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.|+|+|.+|||||||++.|.|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999985
No 255
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.47 E-value=0.019 Score=56.70 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 256
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.46 E-value=0.0099 Score=61.49 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=46.3
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---------cccccHHHHHHHHHhC----C
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---------QDIATSDAMKLAREVD----P 205 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~---------~d~~~~~~l~la~~~d----~ 205 (599)
...+.||||+|.- ..+.+...|.++++++|+|++... ..-.-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQe-------------~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQR-------------NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCST-------------TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCch-------------hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 4579999999983 335667889999999999886541 1111233444444432 2
Q ss_pred CCCceEEEeccCCCCC
Q 007538 206 TGERTFGVLTKLDLMD 221 (599)
Q Consensus 206 ~g~rti~VltK~Dl~~ 221 (599)
.+.++|+|+||+|+.+
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 4679999999999853
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.46 E-value=0.02 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.++++|+.|||||||++.|.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999997
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.43 E-value=0.022 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999996
No 259
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.40 E-value=0.017 Score=59.16 Aligned_cols=31 Identities=32% Similarity=0.661 Sum_probs=24.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.++|+|..||||||++++|+|. +|...|.+|
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i~ 203 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEERIIS 203 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCcEEE
Confidence 5899999999999999999995 444555443
No 260
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.37 E-value=0.019 Score=59.62 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=25.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.|+|+|..||||||++++|+|. +|...+.+|
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I~ 207 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQRLIT 207 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCceEEE
Confidence 5999999999999999999995 454555443
No 261
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.37 E-value=0.019 Score=55.81 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999996
No 262
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.37 E-value=0.02 Score=59.52 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCc---HHHHHhCcccccCC-
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN---ALDVLEGRSYRLQH- 239 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~---~~~~~~~~~~~l~~- 239 (599)
+.+.++...|.+.++.+++|++..+ . ...+....++... +.++++|+||+|+.+.... ..+.+.......+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d--~-~~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFD--F-NGSWLPGLHRFVG-NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTS--H-HHHCCTTHHHHSS-SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCcEEEEEEECCC--C-cccHHHHHHHHhC-CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 6778888899988888877766543 2 1223223333332 6899999999999875432 12222211122233
Q ss_pred --CeEEEEcCChhhhccCCCHHH
Q 007538 240 --PWVGIVNRSQADINRNIDMIV 260 (599)
Q Consensus 240 --g~~~v~~~s~~~i~~~~~~~~ 260 (599)
.++.+++.++.++++++..+.
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~ 155 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIE 155 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhh
Confidence 467788888888776554443
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.37 E-value=0.02 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|++|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999986
No 264
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.35 E-value=0.022 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999996
No 265
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.35 E-value=0.016 Score=54.88 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999995
No 266
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.31 E-value=0.022 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 267
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.31 E-value=0.02 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|.+||||||+++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999996
No 268
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.27 E-value=0.053 Score=54.12 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccccCCCeEE
Q 007538 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVG 243 (599)
Q Consensus 166 i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l~~g~~~ 243 (599)
....+..++.++|+|+.+++ +........ ..+.+.+ .+.+.++|+||+|+.+... .+.+..+ ..+..++.
T Consensus 13 a~~~~~~~l~~aDvVl~VvD-Ar~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~----~~g~~~i~ 84 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVD-ARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFE----NQGIRSLS 84 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEE-TTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHH----TTTCCEEE
T ss_pred HHHHHHHHHhhCCEEEEEEe-CCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHH----hcCCcEEE
Confidence 45667888999998877665 444332221 1233333 4689999999999987421 1233322 12345566
Q ss_pred EEcCChhhhccCCCHH
Q 007538 244 IVNRSQADINRNIDMI 259 (599)
Q Consensus 244 v~~~s~~~i~~~~~~~ 259 (599)
+++.++.++.++...+
T Consensus 85 iSA~~~~gi~~L~~~i 100 (282)
T 1puj_A 85 INSVNGQGLNQIVPAS 100 (282)
T ss_dssp CCTTTCTTGGGHHHHH
T ss_pred EECCCcccHHHHHHHH
Confidence 6666666655544433
No 269
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.24 E-value=0.023 Score=56.14 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|.|.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5889999999999999999996
No 270
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.23 E-value=0.024 Score=55.88 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 271
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.23 E-value=0.025 Score=57.00 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
-.++++|.+|||||||+|+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 368999999999999999999974
No 272
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.18 E-value=0.024 Score=55.70 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=24.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.++++|+.|||||||++.|+|. +|..+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI--HRPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS--SCCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEEE
Confidence 5889999999999999999996 344445444
No 273
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.17 E-value=0.02 Score=62.29 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.|+|+|.+||||||++++|+|. +|.+.+++|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 3899999999999999999984 566666554
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.17 E-value=0.018 Score=53.91 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|..|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 275
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.13 E-value=0.026 Score=56.04 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|+.|||||||++.|+|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999996
No 276
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.09 E-value=0.027 Score=56.15 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999996
No 277
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.05 E-value=0.02 Score=54.99 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.++|+|+.|||||||++.|+|.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999996
No 278
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.01 E-value=0.027 Score=55.76 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|.|.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999996
No 279
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.95 E-value=0.029 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.95 E-value=0.021 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|+.|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999985
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.87 E-value=0.027 Score=52.00 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|.|+|+|..|||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999975
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.87 E-value=0.022 Score=54.45 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|+.|||||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999995
No 283
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.79 E-value=0.029 Score=54.93 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 284
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.77 E-value=0.023 Score=57.43 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|||+.|||||||++.|+|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999996
No 285
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.50 E-value=0.037 Score=50.68 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 588999999999999998764
No 286
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.43 E-value=0.037 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.36 E-value=0.032 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|.+||||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.22 E-value=0.032 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 289
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.20 E-value=0.035 Score=50.34 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999996
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.20 E-value=0.044 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++|+|+.|||||||++.|+|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999999973
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.17 E-value=0.08 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
...|+|+|.+|||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999999874
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.10 E-value=0.036 Score=54.73 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|+.||||||++++|.|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999995
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.10 E-value=0.038 Score=51.75 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|.+||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999986
No 294
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.09 E-value=0.02 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+.|+|+|..+||||||++.|.|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999985
No 295
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.05 E-value=0.042 Score=55.11 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999996
No 296
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.99 E-value=0.04 Score=55.68 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=34.8
Q ss_pred HHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCC
Q 007538 171 RSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (599)
Q Consensus 171 ~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~ 223 (599)
+..+.+.|.++++++....++.....-+++..+...+.+.++|+||+|+.+..
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 34688999887766544345533333334433345688999999999999763
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.98 E-value=0.039 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|+.|||||||++.|.|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999984
No 298
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=92.97 E-value=0.095 Score=49.75 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCccc-ccHHHH-HHHHHhCC----CCCceEEEeccC-CCCCCCCcHHHHHhCc-cc
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDI-ATSDAM-KLAREVDP----TGERTFGVLTKL-DLMDKGTNALDVLEGR-SY 235 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~-~~~~~l-~la~~~d~----~g~rti~VltK~-Dl~~~~~~~~~~~~~~-~~ 235 (599)
+.++.+.+.|.++.|+||+||+++..+. ...+.+ ++.+.+++ .+.+.++..||- |+...- ...++.... ..
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am-s~~EI~e~L~L~ 191 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM-PCFYLAHELHLN 191 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC-CHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC-CHHHHHHHcCCc
Confidence 5678999999999999999998776532 222222 12222222 466788888996 664322 222332211 11
Q ss_pred ccCCCeE--EEEcCChhhhccCCCHH
Q 007538 236 RLQHPWV--GIVNRSQADINRNIDMI 259 (599)
Q Consensus 236 ~l~~g~~--~v~~~s~~~i~~~~~~~ 259 (599)
.++..|+ ++++.+++++.++++.+
T Consensus 192 ~l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 192 LLNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred CCCCCEEEEEeECCCCcCHHHHHHHH
Confidence 1235664 67888888877665544
No 299
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.89 E-value=0.056 Score=48.72 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.8
Q ss_pred CeEEEECCCCCCHHHHHHHh
Q 007538 39 PSVAVVGGQSSGKSSVLESV 58 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL 58 (599)
+.|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.84 E-value=0.042 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+|+|.+||||||+++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.78 E-value=0.057 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhh---CCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVV---GRD 62 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~---G~~ 62 (599)
...|+|+|.+||||||+++.|. |..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3479999999999999999999 864
No 302
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.76 E-value=0.038 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 303
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.74 E-value=0.044 Score=50.71 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+++|.+||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999986
No 304
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.67 E-value=0.058 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 305
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.64 E-value=0.06 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58899999999999999999963
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.58 E-value=0.062 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 307
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.51 E-value=0.063 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58899999999999999999963
No 308
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.49 E-value=0.067 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 309
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.49 E-value=0.036 Score=57.62 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH-HHHHHhCCCCCceEEEeccCCCCCCCCc---HHHHHhCcccccCC
Q 007538 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAM-KLAREVDPTGERTFGVLTKLDLMDKGTN---ALDVLEGRSYRLQH 239 (599)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l-~la~~~d~~g~rti~VltK~Dl~~~~~~---~~~~~~~~~~~l~~ 239 (599)
+.+.++...|...++.++++++..+.+. .+. .+.+.+ .+.++++|+||+|+.+.... ..+.+.......+.
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~---s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNG---SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGG---GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCC---chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC
Confidence 4567778888888888877776544321 111 122222 26799999999999876432 12222211122222
Q ss_pred ---CeEEEEcCChhhhccCCCHHHHHHHHHhHhcCCCCCCchhhccChHHHHHHHHH
Q 007538 240 ---PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSK 293 (599)
Q Consensus 240 ---g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~ 293 (599)
.++.+++.++.++++++..+.... .....+--=....|...|-+.|..
T Consensus 134 ~~~~v~~iSA~~g~gi~~L~~~I~~~~------~~~~i~~vG~~nvGKStliN~L~~ 184 (369)
T 3ec1_A 134 CPVDVCLVSAAKGIGMAKVMEAINRYR------EGGDVYVVGCTNVGKSTFINRIIE 184 (369)
T ss_dssp CCSEEEECBTTTTBTHHHHHHHHHHHH------TTSCEEEECCTTSSHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHhhc------ccCcEEEEcCCCCchHHHHHHHHh
Confidence 356778888777766554443321 111100000235777776666654
No 310
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.48 E-value=0.063 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58899999999999999999963
No 311
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.48 E-value=0.056 Score=55.79 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58899999999999999999963
No 312
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.43 E-value=0.065 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58899999999999999999963
No 313
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.40 E-value=0.057 Score=51.39 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+.|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.38 E-value=0.052 Score=49.45 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|.+||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999999753
No 315
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.35 E-value=0.067 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58899999999999999999963
No 316
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.32 E-value=0.051 Score=55.08 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.+|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 5889999999999999999995
No 317
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.31 E-value=0.054 Score=50.63 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|..||||||+++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999985
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.26 E-value=0.077 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
....|+|+|.+||||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4456899999999999999999764
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.23 E-value=0.044 Score=52.66 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=15.6
Q ss_pred CeEEEECCCCCCHHHHHHHhh-CC
Q 007538 39 PSVAVVGGQSSGKSSVLESVV-GR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~-G~ 61 (599)
..|+++|+.|||||||++.|. |.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999999 86
No 320
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.20 E-value=0.072 Score=55.31 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58899999999999999999963
No 321
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.14 E-value=0.1 Score=48.90 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+|+|.+||||||+++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.09 E-value=0.054 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
...+|+|+.+|||||+++||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.09 E-value=0.079 Score=50.30 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=23.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (599)
.++|+|+++||||||+..|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 588999999999999999998533344433
No 324
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.04 E-value=0.33 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (599)
...|+|.|..|+||||+.-.|.
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 3468888999999999987664
No 325
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.01 E-value=0.057 Score=55.78 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999985
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.00 E-value=0.091 Score=48.16 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|.|+|+|.+||||||++++|.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999874
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.95 E-value=0.063 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|.+||||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999885
No 328
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.80 E-value=0.061 Score=55.35 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58899999999999999999973
No 329
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.76 E-value=0.069 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCCHHHHHHHhh---CCCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVV---GRDF 63 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~---G~~~ 63 (599)
-..|+|+|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3579999999999999999999 8643
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.70 E-value=0.086 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+++|.+||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.62 E-value=0.072 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 332
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.50 E-value=0.076 Score=49.69 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|.+||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.47 E-value=0.066 Score=55.42 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-+++|+|..|||||||++.|.|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999996
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.44 E-value=0.075 Score=51.60 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|+.|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 335
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.41 E-value=0.14 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-++++|++|+|||||+.++.|.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999885
No 336
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.40 E-value=0.097 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999975
No 337
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.37 E-value=0.11 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999763
No 338
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.35 E-value=0.058 Score=55.68 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999963
No 339
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.24 E-value=0.1 Score=49.01 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.+||||||+.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999985
No 340
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.10 E-value=0.15 Score=61.92 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|||+.|||||||++.|.|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6999999999999999999995
No 341
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.05 E-value=0.11 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 342
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.00 E-value=0.11 Score=46.49 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.1
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (599)
+..+|+|+.+|||||+++||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999986
No 343
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.95 E-value=0.084 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|+.||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 344
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.89 E-value=0.072 Score=47.64 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-..++++|++|+|||+|++++.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999985
No 345
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.88 E-value=0.087 Score=55.63 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|+.||||||++++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999985
No 346
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.76 E-value=0.13 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhh
Q 007538 38 LPSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (599)
.+.|+++|.+||||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
No 347
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.71 E-value=0.086 Score=53.22 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999984
No 348
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.67 E-value=0.14 Score=47.88 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+++|.+||||||+..+|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.64 E-value=0.13 Score=47.24 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
|.|+++|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998853
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.62 E-value=0.14 Score=47.20 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..+.|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999653
No 351
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.58 E-value=0.067 Score=54.32 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|.++|+|..||||||++|.|.|.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999986
No 352
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.52 E-value=0.13 Score=47.18 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 353
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.48 E-value=0.14 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
+.|+++|.+||||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999965
No 354
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.47 E-value=0.11 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.++++|+.|||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 588999999999999999994
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.41 E-value=0.11 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999985
No 356
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.38 E-value=0.12 Score=47.45 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 357
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.21 E-value=0.12 Score=56.93 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+++||+.|||||||++.|.|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999996
No 358
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.19 E-value=0.15 Score=56.20 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 359
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.07 E-value=0.13 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|.|.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999996
No 360
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.03 E-value=0.14 Score=56.57 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999996
No 361
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.99 E-value=0.14 Score=56.64 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+++||+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 362
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.97 E-value=0.16 Score=46.62 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 007538 40 SVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (599)
.|+++|.+||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 363
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.95 E-value=0.16 Score=47.88 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 364
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.89 E-value=0.11 Score=55.57 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-+.++|+|+.|||||||++.|+|.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999999996
No 365
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.88 E-value=0.18 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhh
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~ 59 (599)
..+.|+++|.+||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999997
No 366
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.80 E-value=0.14 Score=56.75 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+++||+.|||||||++.|.|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999996
No 367
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.78 E-value=0.13 Score=56.83 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+++||+.|||||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 368
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.77 E-value=0.14 Score=47.06 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+++|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.75 E-value=0.13 Score=52.26 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.+||||||+++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 370
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.73 E-value=0.12 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-.++|+|+.|||||||+++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 45889999999999999999995
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.69 E-value=0.18 Score=46.48 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
.+.|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 372
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.55 E-value=0.17 Score=47.21 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|.|.+||||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 373
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.55 E-value=0.21 Score=54.57 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=24.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (599)
.++++|..|||||||++.|+|. ++...|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~i 325 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE--ITADEGSV 325 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS--SCCSBCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCcEE
Confidence 5889999999999999999996 34444443
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.53 E-value=0.18 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 375
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.53 E-value=0.23 Score=46.32 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.++|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.51 E-value=0.2 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.50 E-value=0.19 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 378
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.50 E-value=0.22 Score=54.33 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=24.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.++|+|..|||||||++.|+|. +|...|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV--EEPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS--SCCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CCCCCeEEE
Confidence 6889999999999999999996 344444443
No 379
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.39 E-value=0.17 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.1
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
.+-.+|+|+.||||||++++|+.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999983
No 380
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.26 E-value=0.16 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|..+|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.17 E-value=0.19 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|++.|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 382
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.96 E-value=0.25 Score=54.64 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999996
No 383
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.94 E-value=0.26 Score=54.65 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=24.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCCCCcccccccc
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (599)
.++|+|..|||||||++.|+|. ++-..|.++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~ 414 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV--EEPTEGKVE 414 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS--SCCSBSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCceEEE
Confidence 6889999999999999999996 343444443
No 384
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.84 E-value=0.23 Score=44.64 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 385
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.80 E-value=0.21 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
+.|+++|.++|||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 386
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.79 E-value=0.21 Score=45.80 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+++|.++|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 387
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.79 E-value=0.21 Score=45.89 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 388
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.68 E-value=0.2 Score=46.44 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999854
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.67 E-value=0.3 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+..++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999985
No 390
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.66 E-value=0.18 Score=49.00 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 007538 41 VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (599)
|+++|++|+|||||+++|.|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999985
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.61 E-value=0.22 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|.+||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 392
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.57 E-value=0.18 Score=50.00 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 007538 41 VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (599)
|+++|++|+|||+|+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 393
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.55 E-value=0.26 Score=54.55 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|..|||||||++.|.|.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999996
No 394
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.50 E-value=0.22 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 395
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.43 E-value=0.2 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
...|+|+|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 396
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.34 E-value=0.19 Score=47.54 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|++|||||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999975
No 397
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.25 E-value=0.21 Score=46.81 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+|+|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999974
No 398
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.22 E-value=0.48 Score=47.16 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+++|.+||||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.12 E-value=0.21 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
-..|+++|.+||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.09 E-value=0.24 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
...|+|+|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999973
No 401
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.04 E-value=0.11 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 402
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.01 E-value=1.6 Score=50.77 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=18.1
Q ss_pred eEEEECCCCCCHHHHHHHh
Q 007538 40 SVAVVGGQSSGKSSVLESV 58 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL 58 (599)
.++|+|+.++||||+++.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 403
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.90 E-value=0.4 Score=46.63 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+++|.+||||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999764
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.84 E-value=0.24 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
+.|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 405
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.83 E-value=0.29 Score=45.57 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
|.|+|.|.+||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999965
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.81 E-value=0.29 Score=46.28 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+++|.++|||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 407
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.75 E-value=0.25 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.1
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (599)
+-.+|+|+.+|||||+++||.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999986
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.68 E-value=0.27 Score=46.48 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.+||||||+.+.|.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 409
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.63 E-value=0.5 Score=48.49 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|.|+++|.+|+||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999874
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.60 E-value=0.19 Score=50.00 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|++|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999986
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.59 E-value=0.26 Score=46.51 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.58 E-value=0.25 Score=45.27 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
+.|+++|.++|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 413
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.57 E-value=0.26 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.|||||||++.|+|.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999996
No 414
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.56 E-value=0.65 Score=41.84 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+-|+++|++|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.51 E-value=0.29 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
...|+|+|.++|||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999973
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.48 E-value=0.26 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999963
No 417
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.46 E-value=0.59 Score=45.16 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|++.|.++|||||+...|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999963
No 418
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.43 E-value=0.24 Score=45.16 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999963
No 419
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.23 E-value=0.24 Score=48.84 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 007538 41 VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (599)
|+++|++|+|||||+++|.|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999985
No 420
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.16 E-value=0.77 Score=40.32 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.+.|++|+|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3889999999999999999754
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.87 E-value=0.34 Score=43.59 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999853
No 422
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.60 E-value=0.39 Score=53.16 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 007538 41 VAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~ 62 (599)
++++|..|||||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 423
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.57 E-value=0.34 Score=47.29 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.++||||||..+|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4899999999999999999753
No 424
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.46 E-value=0.37 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 425
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.38 E-value=0.44 Score=45.62 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
...|+++|.++|||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999964
No 426
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.37 E-value=0.29 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|.+||||||+...|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.24 E-value=0.28 Score=50.92 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999973
No 428
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.19 E-value=0.067 Score=51.56 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 007538 41 VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (599)
++|+|+.+||||||+++|.|.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999996
No 429
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.18 E-value=0.5 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|+++|++|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 430
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.15 E-value=0.37 Score=45.00 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+++|..+|||||+.+.|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 431
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=86.09 E-value=0.15 Score=50.19 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCC--cHHHHHhCcccccCCCeEEE
Q 007538 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWVGI 244 (599)
Q Consensus 167 ~~~~~~yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~--~~~~~~~~~~~~l~~g~~~v 244 (599)
...+...+.++|.|+.+++ +........ ..+. .+ +.+.++|+||+|+.+... .+.+.++ ..+... .+
T Consensus 12 ~~~~~~~l~~~D~vl~VvD-ar~P~~~~~-~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~----~~g~~v-~i 80 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRD-ARAPFATSA-YGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFK----KQGKRV-IT 80 (262)
T ss_dssp THHHHHHHTTCSEEEEEEE-TTSTTTTSC-TTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHH----HTTCCE-EE
T ss_pred HHHHHHHHhhCCEEEEEee-CCCCCcCcC-hHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHH----HcCCeE-EE
Confidence 3456778899998877665 443332211 0111 12 789999999999987431 1233332 123445 67
Q ss_pred EcCChhhhc
Q 007538 245 VNRSQADIN 253 (599)
Q Consensus 245 ~~~s~~~i~ 253 (599)
++.++.+++
T Consensus 81 Sa~~~~gi~ 89 (262)
T 3cnl_A 81 THKGEPRKV 89 (262)
T ss_dssp CCTTSCHHH
T ss_pred ECCCCcCHH
Confidence 776666543
No 432
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.04 E-value=0.31 Score=45.73 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.++++|++|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 433
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=85.84 E-value=0.57 Score=50.52 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.++|++|+|||+|+++|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999985
No 434
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.83 E-value=0.29 Score=59.34 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+|++||+.|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6999999999999999999985
No 435
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.78 E-value=0.33 Score=46.36 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|++++|||||+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999985
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.55 E-value=0.41 Score=45.27 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999953
No 437
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=85.45 E-value=0.37 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.1
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
.-.+|+|+.||||||+++||..
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999853
No 438
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.40 E-value=0.76 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|-++|.|++|+||||+++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 439
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.17 E-value=0.41 Score=57.86 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+++||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 440
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.11 E-value=0.33 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.+||||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999963
No 441
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.98 E-value=0.31 Score=56.71 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++|+|..|||||||++.|+|.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 442
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=84.81 E-value=0.41 Score=47.61 Aligned_cols=96 Identities=10% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCcc-cccHHHH----HHHHHhC-CCCCceEEEecc-CCCCCCCCcHHHHHhCc-ccc
Q 007538 165 DIESMVRSYVEKPNSVILAISPANQD-IATSDAM----KLAREVD-PTGERTFGVLTK-LDLMDKGTNALDVLEGR-SYR 236 (599)
Q Consensus 165 ~i~~~~~~yi~~~~~iIL~v~~a~~d-~~~~~~l----~la~~~d-~~g~rti~VltK-~Dl~~~~~~~~~~~~~~-~~~ 236 (599)
.++.+.+.|.++.|++|+||+++..+ +...+.+ .+..+-. ..+.+.++..|| -|+...-+ ..++.... ...
T Consensus 199 ~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L~~ 277 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHLNL 277 (312)
T ss_dssp CCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTGGG
T ss_pred HHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCCcc
Confidence 45888999999999999988876653 2222222 1222211 246788888897 47743322 22332211 111
Q ss_pred cCCCeE--EEEcCChhhhccCCCHHHH
Q 007538 237 LQHPWV--GIVNRSQADINRNIDMIVA 261 (599)
Q Consensus 237 l~~g~~--~v~~~s~~~i~~~~~~~~~ 261 (599)
++..|+ ++++.+++++.++++.+..
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~~ 304 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWILE 304 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHHH
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHHH
Confidence 234664 6788888888877765543
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.79 E-value=0.47 Score=45.47 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (599)
....|+|+|.+||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999975
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.75 E-value=0.47 Score=45.52 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|++.|.+||||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 445
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.50 E-value=0.4 Score=48.78 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|.+.++|++|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999884
No 446
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.50 E-value=0.36 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.++++|+.+||||||++.|.|.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 447
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.42 E-value=0.56 Score=45.23 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+|+|.++|||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 448
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.36 E-value=2.8 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.+.|+||+|||++..|+.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999864
No 449
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=84.32 E-value=0.4 Score=49.41 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
...+++|+.|+||||++++|.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 36889999999999999999864
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.26 E-value=0.54 Score=44.36 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|.|||||+|.-..|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 451
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.19 E-value=0.84 Score=39.99 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.+.|++|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3889999999999999999764
No 452
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.08 E-value=0.53 Score=45.64 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+|.|.++|||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.02 E-value=0.59 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+.|+|+|+++||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999999753
No 454
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.01 E-value=0.93 Score=40.72 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+-|++.|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999754
No 455
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.92 E-value=1 Score=45.38 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..+.|.+.|++|+|||++..+|...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456999999999999999999654
No 456
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=83.90 E-value=0.41 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhCCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
..++|+|+.||||||++++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 368999999999999999999863
No 457
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.85 E-value=0.41 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
....+++|+.|||||||++||...
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999999853
No 458
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.64 E-value=0.41 Score=49.25 Aligned_cols=78 Identities=10% Similarity=0.134 Sum_probs=40.1
Q ss_pred hhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCCCCCCCCc--HHHHHhCcccccCCCeEEEEcCChh
Q 007538 173 YVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQA 250 (599)
Q Consensus 173 yi~~~~~iIL~v~~a~~d~~~~~~l~la~~~d~~g~rti~VltK~Dl~~~~~~--~~~~~~~~~~~l~~g~~~v~~~s~~ 250 (599)
.+.+.|.++++ ++...++.....-+++......+.+.++|+||+|+.+.... ....+. .-..+++..+.+++.++.
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~-~y~~~G~~v~~~Sa~~~~ 204 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMD-IYRNIGYRVLMVSSHTQD 204 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHH-HHHTTTCCEEECBTTTTB
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHH-HHHhCCCcEEEEecCCCc
Confidence 46788987654 44444443222222222222246788999999999975320 111111 112334445556665555
Q ss_pred hh
Q 007538 251 DI 252 (599)
Q Consensus 251 ~i 252 (599)
++
T Consensus 205 gl 206 (358)
T 2rcn_A 205 GL 206 (358)
T ss_dssp TH
T ss_pred CH
Confidence 44
No 459
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.62 E-value=0.79 Score=43.27 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.+++.|++|+|||++..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999988888864
No 460
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=83.59 E-value=0.48 Score=49.01 Aligned_cols=21 Identities=48% Similarity=0.718 Sum_probs=19.1
Q ss_pred CeEEEECCCCCCHHHHHHHhh
Q 007538 39 PSVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (599)
.-.+++|+.||||||+|+||.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999985
No 461
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.57 E-value=0.55 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 462
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.45 E-value=1.1 Score=41.91 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-++|.|++|+|||+++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.34 E-value=0.62 Score=44.39 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=19.0
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+.|+|+|.|+|||+|....|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34667999999999999998753
No 464
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.31 E-value=0.5 Score=46.84 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 007538 40 SVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (599)
.|+|+|.+||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 465
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=83.29 E-value=0.17 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..++++|..|||||||+++|.+.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999775
No 466
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=83.26 E-value=0.65 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.++|++|+|||+++.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999874
No 467
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.69 E-value=0.69 Score=43.67 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+-|++.|++|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999764
No 468
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.59 E-value=0.47 Score=46.79 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.++|+|++|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 469
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=82.56 E-value=0.73 Score=42.63 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999753
No 470
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.48 E-value=0.93 Score=46.13 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+.|+|+|.++||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 471
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.87 E-value=0.62 Score=47.30 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+|.+.+.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999885
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.50 E-value=0.7 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
+.|+|+|+++||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578999999999999999974
No 473
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=81.40 E-value=0.86 Score=42.18 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-|++.|++|+|||+++.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 474
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.24 E-value=10 Score=38.07 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=20.5
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPS-VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~-IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+|. +.+.|++|+|||++..++...
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHH
Confidence 3444 889999999999999988643
No 475
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.18 E-value=0.74 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (599)
..|.+.|+|.++||||+++++|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999999975
No 476
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=80.90 E-value=0.78 Score=55.40 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+++||..|||||||++.|.|.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=80.73 E-value=0.55 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCeEEEECCCCCCHHHHHHHhhC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (599)
.+.|+|.|..||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 478
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=80.68 E-value=0.41 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5889999999999999999986
No 479
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.55 E-value=4.6 Score=42.37 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.+.|+||+|||++..|+.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 4999999999999999999864
No 480
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.41 E-value=2.2 Score=40.97 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHhhCC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (599)
+-|.+.|++|+|||++..++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999763
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=80.07 E-value=0.75 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
....|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999754
No 482
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.02 E-value=0.94 Score=42.51 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.-..|+++|++++|||+|..+|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3446899999999999999999865
No 483
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.91 E-value=4.4 Score=42.67 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.+.|+||+|||++..|+.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 484
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.84 E-value=3.9 Score=46.61 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.2
Q ss_pred cCCC-eEEEECCCCCCHHHHHHHhhCC
Q 007538 36 EALP-SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 36 ~~lP-~IvVvG~~ssGKSSllnaL~G~ 61 (599)
...| -|.+.|++|+|||+|..++.+.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445 4899999999999999999875
No 485
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=79.69 E-value=0.89 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
..|+++|.+||||||+.+.|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999975
No 486
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.67 E-value=4.6 Score=42.02 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
-|.+.|+||+|||++..|+.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 4889999999999999999864
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.38 E-value=0.88 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.++||||||...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999999754
No 488
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.18 E-value=2.2 Score=44.94 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.3
Q ss_pred CCCe-EEEECCCCCCHHHHHHHhhCC
Q 007538 37 ALPS-VAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 37 ~lP~-IvVvG~~ssGKSSllnaL~G~ 61 (599)
..|+ |.+.|+||+|||++..|+.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444 899999999999999999864
No 489
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=79.16 E-value=11 Score=36.31 Aligned_cols=89 Identities=10% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCccCCCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc-HHHHHHHHHhCCCCCceEEEeccC
Q 007538 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDAMKLAREVDPTGERTFGVLTKL 217 (599)
Q Consensus 139 ~~~ltlvDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~v~~a~~d~~~-~~~l~la~~~d~~g~rti~VltK~ 217 (599)
..++.|||+|+-.. ..+...+..+|.+|+++.+....+.. ...++.++.+.+ +.+..+|+|+.
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~ 207 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNL-FLPIFLIITRF 207 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTC-CCCEEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhc-cCCEEEEEecc
Confidence 47899999998532 12334556789888877665433311 122333444432 34677999999
Q ss_pred CCCCCCCcHHHHHhCcccccCCCeEEEEcCC
Q 007538 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRS 248 (599)
Q Consensus 218 Dl~~~~~~~~~~~~~~~~~l~~g~~~v~~~s 248 (599)
+......+..+.+.. +..+.++.+.+
T Consensus 208 ~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 208 KKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp CTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred cCcchHHHHHHHHhc-----CcccceecCcH
Confidence 533323334444432 34566666544
No 490
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=78.59 E-value=1 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+++|.++|||||+.+.|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 491
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=78.56 E-value=1 Score=44.74 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=19.6
Q ss_pred CCCeEE-EECCCCCCHHHHHHHhhC
Q 007538 37 ALPSVA-VVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 37 ~lP~Iv-VvG~~ssGKSSllnaL~G 60 (599)
..|..+ +.|++|+|||++..+|..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556555 559999999999999975
No 492
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.51 E-value=1.3 Score=44.09 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHhhC
Q 007538 39 PSVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (599)
+-|++.|++|+|||++..++..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999964
No 493
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.45 E-value=0.85 Score=53.04 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHhhCCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGRD 62 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (599)
.++++|+.|||||||++.|.|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999643
No 494
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=78.41 E-value=0.85 Score=51.09 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=18.3
Q ss_pred eEEEECCCCCCHHHHHHHhh
Q 007538 40 SVAVVGGQSSGKSSVLESVV 59 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (599)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58999999999999999875
No 495
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.18 E-value=1.3 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
..-++|.|.+|+||||+++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999874
No 496
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.10 E-value=2.2 Score=41.59 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCCHHHHHHHhhCC
Q 007538 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.+-|.+.|++|+|||++..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346889999999999999999753
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.89 E-value=1 Score=43.16 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|++.|..||||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=77.77 E-value=1.2 Score=41.80 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.|+++|.++|||||+...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 499
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.55 E-value=1.1 Score=45.35 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHhhCC
Q 007538 40 SVAVVGGQSSGKSSVLESVVGR 61 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (599)
.|+|+|.++||||||..+|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 500
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.44 E-value=1.1 Score=42.69 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.2
Q ss_pred eEEEECCCCCCHHHHHHHhhC
Q 007538 40 SVAVVGGQSSGKSSVLESVVG 60 (599)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (599)
.++|+|++|+|||+++..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999777754
Done!