BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007539
(599 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/171 (60%), Positives = 127/171 (74%)
Query: 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKS 487
+DM++MF LL+E+ +++D A PL + G I+F+NVHFSY R+ L VSF V G++
Sbjct: 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQT 82
Query: 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND 547
+A+VG SG+GKSTILRLLFR +D SG IRIDGQDI +VT SLR IGVVPQDTVLFND
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
TI NIRYGR++A +EV AA+ A IHD IM FP Y T VGERGLK+ G
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 202/400 (50%), Gaps = 20/400 (5%)
Query: 209 RTIRSVSRKVFSHLHELDLRYHLSRETG-ALNRIIDRGSRAINFILSSMV---FNVVPTI 264
+ + + +K+++HL L R++ + + G ++R+I+ + +FIL+ ++ + + I
Sbjct: 91 KILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITII 150
Query: 265 LEISM-----VSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDAS 319
+ +S+ V LA F PF +T YV F + R K + ++A +
Sbjct: 151 IALSIMFFLDVKLTLAALFIFPFYILT-----VYVFFG----RLR-KLTRERSQALAEVQ 200
Query: 320 TRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALS 379
+ + VK F E EA+ +D+ + ALK R A+ N +
Sbjct: 201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPI 260
Query: 380 TAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
+ + ++ +SG +TVG L + + QS M +FQL++E
Sbjct: 261 IVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320
Query: 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGK 498
DI++ A P+ +K G I D+V F Y E IL ++ + G++VA VG SG GK
Sbjct: 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGK 380
Query: 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL 558
ST++ L+ R +D SG I IDG +I + SLR IG+V QD +LF+DT+ NI GR
Sbjct: 381 STLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440
Query: 559 SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
+AT+EEV +AA+ A HD IMN P Y T VGERG+K+ G
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 155/303 (51%), Gaps = 20/303 (6%)
Query: 303 WRTK-----FRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY---DEFLRRYED 354
W TK FRK D + + ++L+ V+ F E +E E + +E LRR
Sbjct: 182 WLTKKGNPLFRKIQESTD-EVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSII 240
Query: 355 AALKTQRSLAFLNFGQNV-IFSAALSTAMVLCSHGIL--SGEMTVGDLVMVXXXXXXXXX 411
+A + + F + IF + VL G+L + +M +G ++
Sbjct: 241 SAF------SLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 412 XXXXXXSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE 471
++ V++ K + ++L EK I++ DNA+ L GS+ F+NV F Y
Sbjct: 295 SLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN 354
Query: 472 R-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES 530
+L GV+F V G VA++G +GSGKST++ L+ R D G + +D D+ V L+
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
LR I VPQ+TVLF+ TI N+++GR AT++E+ +AA+ A IHD I++ P Y + V
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRV- 473
Query: 591 ERG 593
ERG
Sbjct: 474 ERG 476
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 140/488 (28%), Positives = 210/488 (43%), Gaps = 32/488 (6%)
Query: 124 RLRVITALGFLVAAKVLNVQVPFLFKXXXXXXXXXXXXXXXXXXXXXXXXXFGTPAAVLI 183
R R+ A+GFL + V+++ PF G A L
Sbjct: 49 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC---LGLSAVFLC 105
Query: 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIID 243
G +A N +R + R + + +FS + ++ + TG L I+
Sbjct: 106 G--------AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGEL---IN 154
Query: 244 RGSRAINFILSSMVFNVVPTILEISMVS-GILAYKFGAPFAWITSLSVVAYV-VFTLSVT 301
R S + S+ N+ + + S GI F +P LSVV V + +
Sbjct: 155 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 214
Query: 302 QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361
++ K K + A+ A + + N TV+ F E E E+Y + D ++ R
Sbjct: 215 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV----DHVMQLAR 270
Query: 362 SLAFLNFG--QNVIFSAALSTAMVLCSHGILSG--EMTVGDLVMVXXXXXXXXXXXXXXX 417
AF G S L VL G+L G MTVG+L
Sbjct: 271 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 330
Query: 418 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ERK 473
S Y E ++ L +++LLE + + + + LN K G+++F NVHF+Y E
Sbjct: 331 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVP 389
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
I S +P+G A+VG SGSGKST+L LL R +D SG+I +DG DI ++ LR
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 534 SIGVVPQDTVLFNDTIFHNIRYG---RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
IG V Q+ +LF+ +I NI YG S T EE+ A A I NFP ++TVVG
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 509
Query: 591 ERGLKIEG 598
E+G+ + G
Sbjct: 510 EKGVLLSG 517
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 140/488 (28%), Positives = 210/488 (43%), Gaps = 32/488 (6%)
Query: 124 RLRVITALGFLVAAKVLNVQVPFLFKXXXXXXXXXXXXXXXXXXXXXXXXXFGTPAAVLI 183
R R+ A+GFL + V+++ PF G A L
Sbjct: 18 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC---LGLSAVFLC 74
Query: 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIID 243
G +A N +R + R + + +FS + ++ + TG L I+
Sbjct: 75 G--------AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGEL---IN 123
Query: 244 RGSRAINFILSSMVFNVVPTILEISMVS-GILAYKFGAPFAWITSLSVVAYV-VFTLSVT 301
R S + S+ N+ + + S GI F +P LSVV V + +
Sbjct: 124 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183
Query: 302 QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361
++ K K + A+ A + + N TV+ F E E E+Y + D ++ R
Sbjct: 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV----DHVMQLAR 239
Query: 362 SLAFLNFG--QNVIFSAALSTAMVLCSHGILSG--EMTVGDLVMVXXXXXXXXXXXXXXX 417
AF G S L VL G+L G MTVG+L
Sbjct: 240 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 299
Query: 418 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ERK 473
S Y E ++ L +++LLE + + + + LN K G+++F NVHF+Y E
Sbjct: 300 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVP 358
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
I S +P+G A+VG SGSGKST+L LL R +D SG+I +DG DI ++ LR
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
IG V Q+ +LF+ +I NI YG S T EE+ A A I NFP ++TVVG
Sbjct: 419 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478
Query: 591 ERGLKIEG 598
E+G+ + G
Sbjct: 479 EKGVLLSG 486
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 101/145 (69%), Gaps = 3/145 (2%)
Query: 456 GGSIQFDNVHFSY--LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513
G +I+F +V+FSY T + L ++F +P+G + A+VG +GSGKSTI +LL+R +D
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE- 73
Query: 514 GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAA 573
G I+I G+++ + S+R IG+VPQDT+LFN+TI +NI YG+L AT+EEV A + A
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQ 133
Query: 574 IHDTIMNFPAKYSTVVGERGLKIEG 598
++D I P K+ T+VG +G+K+ G
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSG 158
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 191/413 (46%), Gaps = 22/413 (5%)
Query: 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALN-RIIDRGSRAINFILS-- 254
++ + + A R I + +K F + ++ + + G LN R+ D S+ IN +
Sbjct: 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSK-INEGIGDK 185
Query: 255 -SMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAY-VVFTLSVTQWRTKFRKAMN 312
M F + T + G W +L ++A V LS W +
Sbjct: 186 IGMFFQAMATFFG--------GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTD 237
Query: 313 K---ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFG 369
K A A A + L TV F + E E+Y+ L + +K +
Sbjct: 238 KELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGA 297
Query: 370 QNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVD 429
++ A+ + A + ++S E ++G ++ V +
Sbjct: 298 AFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGA 357
Query: 430 MKSMFQLLEEKADIQD--RDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAG 485
+F++++ K I + P N++G +++F N+HFSY + E +IL G++ V +G
Sbjct: 358 AYEVFKIIDNKPSIDSFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545
++VA+VG SG GKST ++L+ R +D G + IDGQDI + + LR+ IGVV Q+ VLF
Sbjct: 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
TI NIRYGR T +E+ A + A +D IM P ++ T+VGERG ++ G
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSG 529
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 425 QSLVDMKSMFQLLEEKADIQD-RDNAMPLNLKGGSIQFDNVHFSYLTERKI--LDGVSFV 481
++ V + +++E+ +I + N+ G++QF V F+Y T I L G+S
Sbjct: 996 KATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLE 1055
Query: 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541
V G+++A+VG+SG GKST+++LL R +D +GS+ +DG++I ++ ++ LR +G+V Q+
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 542 TVLFNDTIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
+LF+ +I NI YG S + EE+ AA+ A IH I + P KY+T VG++G ++ G
Sbjct: 1116 PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 185/402 (46%), Gaps = 11/402 (2%)
Query: 202 VFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVV 261
S V+ + + R++F+H + +R+ TG L I S + S + ++V
Sbjct: 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIV 147
Query: 262 PTILEISMVSGILAYKFGAPFAWITSLSVVAYVV-FTLSVTQWR-TKFRKAMNKADNDAS 319
E + + G+L F + L VVA VV F +S R K + M A +
Sbjct: 148 R---EGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT 204
Query: 320 TRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALS 379
+ A L ++ V + + E +++D+ +K + + + +I S AL
Sbjct: 205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALF 264
Query: 380 TAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
+ L S + E+T G +V SV E + + +++F L++
Sbjct: 265 AVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDL 324
Query: 440 KADIQDRDNA-MPLNLKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSG 497
+ + RDN G + +V F+Y E+ L VSF +P GK+VA+VG SGSG
Sbjct: 325 ETE---RDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSG 381
Query: 498 KSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR 557
KSTI L R +D SGSI +DG D+ + L +LR+ +V Q+ LFNDTI +NI Y
Sbjct: 382 KSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441
Query: 558 LSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
T E++ AAR+A + I N P TV+GE G + G
Sbjct: 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 191/413 (46%), Gaps = 22/413 (5%)
Query: 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALN-RIIDRGSRAINFILS-- 254
++ + + A R I + +K F + ++ + + G LN R+ D S+ IN +
Sbjct: 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSK-INEGIGDK 185
Query: 255 -SMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAY-VVFTLSVTQWRTKFRKAMN 312
M F + T + G W +L ++A V LS W +
Sbjct: 186 IGMFFQAMATFFG--------GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTD 237
Query: 313 K---ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFG 369
K A A A + L TV F + E E+Y+ L + +K +
Sbjct: 238 KELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGA 297
Query: 370 QNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVD 429
++ A+ + A + ++S E ++G ++ V +
Sbjct: 298 AFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGA 357
Query: 430 MKSMFQLLEEKADIQD--RDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAG 485
+F++++ K I + P N++G +++F N+HFSY + E +IL G++ V +G
Sbjct: 358 AYEVFKIIDNKPSIDSFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545
++VA+VG SG GKST ++L+ R +D G + IDGQDI + + LR+ IGVV Q+ VLF
Sbjct: 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
TI NIRYGR T +E+ A + A +D IM P ++ T+VGERG ++ G
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSG 529
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 170/330 (51%), Gaps = 17/330 (5%)
Query: 282 FAWITSLSVVAYV--VFTLSVTQWRTKFRKAM-NKADNDASTR-AIDSLINYETVKYFNN 337
+ W +L ++A V + V + + +A+ +K + + S + A +++ N+ TV
Sbjct: 849 YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 338 EAFEAEQYDEFLR-RYEDAALKTQRSLAFLNFGQNVIF---SAALSTAMVLCSHGILSGE 393
E Y + L+ Y +A K +F Q +++ +AA L + +
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQL---- 964
Query: 394 MTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEEKADIQD-RDNAMPL 452
MT ++++V S + ++ V + +++E+ +I +
Sbjct: 965 MTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKP 1024
Query: 453 NLKGGSIQFDNVHFSYLTERKI--LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510
N+ G++QF V F+Y T I L G+S V G+++A+VG+SG GKST+++LL R +D
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084
Query: 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--ATEEEVYDA 568
+GS+ +DG++I ++ ++ LR +G+V Q+ +LF+ +I NI YG S + EE+ A
Sbjct: 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA 1144
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
A+ A IH I + P KY+T VG++G ++ G
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 201/425 (47%), Gaps = 18/425 (4%)
Query: 181 VLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNR 240
V+IG I R S + + S V+ + + ++ R++F H+ + + + + TG L
Sbjct: 70 VVIGLMILRGITSYVS---SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLS 126
Query: 241 IIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLS 299
I S + SS ++ + E + + G+ F ++W S+ ++ + +++
Sbjct: 127 RITYDSEQVA---SSSSGALITVVREGASIIGLFIMMF--YYSWQLSIILIVLAPIVSIA 181
Query: 300 VTQWRTKFR---KAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAA 356
+ +FR K M +T A L ++ V F + E +++D+ R
Sbjct: 182 IRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQG 241
Query: 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXX 416
+K + + + +I S AL+ + S + +T G + +V
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG-GSIQFDNVHFSYLT-ERKI 474
+V + + + +++F +L+ + Q++D + + G ++F NV F+Y +
Sbjct: 302 TNVNAQFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGRDVPA 358
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L ++ +PAGK+VA+VG SGSGKSTI L+ R +D G I +DG D+ E TL SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
+ +V Q+ LFNDT+ +NI Y R + E++ +AAR A D I TV+GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 594 LKIEG 598
+ + G
Sbjct: 479 VLLSG 483
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 201/425 (47%), Gaps = 18/425 (4%)
Query: 181 VLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNR 240
V+IG I R S + + S V+ + + ++ R++F H+ + + + + TG L
Sbjct: 70 VVIGLMILRGITSYIS---SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 126
Query: 241 IIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLS 299
I S + SS ++ + E + + G+ F ++W S+ +V + +++
Sbjct: 127 RITYDSEQVA---SSSSGALITVVREGASIIGLFIMMF--YYSWQLSIILVVLAPIVSIA 181
Query: 300 VTQWRTKFR---KAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAA 356
+ +FR K M +T A L ++ V F + E +++D+ +
Sbjct: 182 IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 241
Query: 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXX 416
+K + + + +I S AL+ + S + +T G + +V
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAM-PLNLKGGSIQFDNVHFSYLT-ERKI 474
+V + + + +++F +L+ + Q++D ++ G ++F NV F+Y E
Sbjct: 302 TNVNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA 358
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L ++ +PAGK+VA+VG SGSGKSTI L+ R +D G I +DG D+ E TL SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
+ +V Q+ LFNDT+ +NI Y R + E++ +AAR A D I T++GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 594 LKIEG 598
+ + G
Sbjct: 479 VLLSG 483
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 134/274 (48%), Gaps = 25/274 (9%)
Query: 332 VKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSH---G 388
+K F E E E++D K Q IFS L M + ++
Sbjct: 229 IKLFTREEKEMEKFDRVNESLRKVGTKAQ------------IFSGVLPPLMNMVNNLGFA 276
Query: 389 ILSG---------EMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
++SG +TVG + + + +L + +F++L+
Sbjct: 277 LISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336
Query: 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKS 499
+ + D D A+ L G I+F NV FSY ++ +L ++F + G+ VA+VG +GSGK+
Sbjct: 337 EEEKDDPD-AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKT 395
Query: 500 TILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS 559
TI+ LL R +D G I +DG DI ++ SLR SIG+V QDT+LF+ T+ N++YG
Sbjct: 396 TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG 455
Query: 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
AT+EE+ +AA+ I + P Y TV+ + G
Sbjct: 456 ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
Query: 433 MFQLLEEKADIQDRDNAMPLNLK-GGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVA 489
++++L+ K I A ++K G I +NVHF+Y + + IL G++ V AG++VA
Sbjct: 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVA 448
Query: 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549
+VG+SG GKSTI+ LL R +D G I IDG D+ ++ LE LRK++ VV Q+ LFN TI
Sbjct: 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTI 508
Query: 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
NI G+ T EE+ A + A I P Y+T+VG+RG ++ G
Sbjct: 509 EENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSG 557
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 171/356 (48%), Gaps = 24/356 (6%)
Query: 258 FNVVPTILEISMVSGI-LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKAD- 315
F+ V T L +SMV+GI LA+ +G A + ++++ V F + R + + ++
Sbjct: 874 FSTVITTL-VSMVAGIGLAFFYGWQMALLI-IAILPIVAFGQYLRGRRFTGKNVKSASEF 931
Query: 316 NDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFS 375
D+ AI+++ N TV+ E E + E L A+K AF+ Q + +
Sbjct: 932 ADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE----AFI---QGLSYG 984
Query: 376 AALSTAMVL--CSHG-----ILSGEMTVGDL--VMVXXXXXXXXXXXXXXXSVYRETVQS 426
A S +L C++ I++ T+ + + V S + E ++
Sbjct: 985 CASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKA 1044
Query: 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYL--TERKILDGVSFVVPA 484
+F +L + + I A G + F NV F+Y E +IL G+SF V
Sbjct: 1045 TFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEP 1104
Query: 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL 544
G+++A+VG SG GKST++ LL R +DT G I IDG +I + E R I +V Q+ L
Sbjct: 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL 1164
Query: 545 FNDTIFHNIRYG--RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
F+ +I NI YG S T +V +AAR A IH+ I P + T VG+RG ++ G
Sbjct: 1165 FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 578 IMNFPAKYSTVVGERGLKIEG 598
I Y+T+VGE+G + G
Sbjct: 122 ISELREGYNTIVGEQGAGLSG 142
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKIEG 598
I Y+T+VGE+G + G
Sbjct: 128 ISELREGYNTIVGEQGAGLSG 148
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKIEG 598
I Y+T+VGE+G + G
Sbjct: 128 ISELREGYNTIVGEQGAGLSG 148
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 578 IMNFPAKYSTVVGERGLKIEG 598
I Y+T+VGE+G + G
Sbjct: 122 ISELREGYNTIVGEQGAGLSG 142
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKIEG 598
I Y+T+VGE+G + G
Sbjct: 128 ISELREGYNTIVGEQGAGLSG 148
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 578 IMNFPAKYSTVVGERGLKIEG 598
I Y+T+VGE+G + G
Sbjct: 124 ISELREGYNTIVGEQGAGLSG 144
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG +GSGKST+ +L+ R + +G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 578 IMNFPAKYSTVVGERGLKIEG 598
I Y+T+VGE+G + G
Sbjct: 124 ISELREGYNTIVGEQGAGLSG 144
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
A + HD I FP Y T VGE G ++ G
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLSG 159
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
A + HD I FP Y T VGE G ++ G
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLSG 159
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522
+V F+Y +IL +SF +A G SG GKSTI LL R + +G I IDGQ
Sbjct: 6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 523 ICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNF 581
I ++LE+ R IG V QD+ + TI N+ YG T+E+++ A + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 582 PAKYSTVVGERGLKIEG 598
P + +T VGERG+KI G
Sbjct: 126 PDQLNTEVGERGVKISG 142
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERG 593
A + HD I FP Y T VGE G
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETG 154
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTERKIL--DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PL+L+G +QF +V F+Y +L G++F + G+ A+VG +GSGKST+ LL
Sbjct: 8 PLHLEG-LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 66
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYD 567
+ G + +DG+ + + L + + V Q+ +F ++ NI YG T EE+
Sbjct: 67 YQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 126
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598
AA ++ H I P Y T V E G ++ G
Sbjct: 127 AAVKSGAHSFISGLPQGYDTEVDEAGSQLSG 157
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Query: 446 RDNAMPLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503
+D+ P GG + ++ Y TE IL+ +SF + G+ V ++G +GSGKST+L
Sbjct: 10 KDDIWP---SGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEE 563
R +T G I+IDG +TLE RK+ GV+PQ +F+ T N+ + +++
Sbjct: 66 AFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQ 123
Query: 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
E++ A + I FP K V+ + G
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 17/143 (11%)
Query: 458 SIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
SI N F++ ++ L+G++F +P G VA+VG G GKS++L L D G +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 517 RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRA-AIH 575
I G S+ VPQ + ND++ NI +G EE Y + +A A+
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFG--CQLEEPYYRSVIQACALL 107
Query: 576 DTIMNFPAKYSTVVGERGLKIEG 598
+ P+ T +GE+G+ + G
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSG 130
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
+I+F V Y + + GVSF + G+ V ++G SGSGK+TILRL+ G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG 556
I G+ + + L ++++G+V Q+ LF T++ N+ +G
Sbjct: 74 IGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVSFG 111
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y + K +DGVSF V G+ VA++G SG GK+T L +L + SG I D D+
Sbjct: 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVN 68
Query: 527 TLESLRKSIGVVPQDTVLFND-TIFHNI----RYGRLSATEEE--VYDAARRAAIHDTIM 579
+ + +G+V Q+ L+ T+F NI R R+S E E V + AR+ I + +
Sbjct: 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD 128
Query: 580 NFPAKYS 586
P + S
Sbjct: 129 RKPTQLS 135
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLE 529
+ L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78
Query: 530 SLRKSIGVVPQD-TVLFNDTIFHNI 553
R+ IG++ Q +L + T+F N+
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNV 103
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLE 529
+ L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 530 SLRKSIGVVPQD-TVLFNDTIFHNI 553
R+ IG++ Q +L + T+F N+
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNV 126
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-T 548
++G +G+GKS L L+ G +R++G DI + E R+ IG VPQD LF +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 549 IFHNIRYG 556
++ NI YG
Sbjct: 87 VYRNIAYG 94
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLE 529
+ L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 530 SLRKSIGVVPQD-TVLFNDTIFHNI 553
R+ IG + Q +L + T+F N+
Sbjct: 102 KARRQIGXIFQHFNLLSSRTVFGNV 126
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKIEG 598
F + +TV+GE G+ + G
Sbjct: 145 KFAEQDNTVLGEGGVTLSG 163
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKIEG 598
F + +TV+GE G+ + G
Sbjct: 145 KFAEQDNTVLGEGGVTLSG 163
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ ++H+ ++ ++ +++ VS + +G+ VAI+G +G+GKST+LRLL G +
Sbjct: 12 LEASHLHY-HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 519 DGQDICEVTLESLRKSIGVVPQDTVL-FNDTIFHNIRYGR 557
GQ++ ++L ++ V+ Q + L F ++ I+ GR
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGR 110
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEVTLES 530
++L G++ + G+ V ++G SGSGKST LR L D G I IDG ++ + L
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 531 LRKSIGVVPQDTVLFND-TIFHNI 553
+R+ +G+V Q LF T+ +NI
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNI 100
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528
+ +++IL G+SF + G+ ++G +G+GK+T LR++ SG + + G+++ E
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84
Query: 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL---------SATEEEVYDAARRAAIHDTIM 579
E +RK I +P++ + + I Y R S EE V A A + + I
Sbjct: 85 E-VRKLISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK 141
Query: 580 NFPAKYS 586
+ + YS
Sbjct: 142 DRVSTYS 148
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEVTLES 530
++L G++ + G+ V ++G SGSGKST LR L D G I IDG ++ + L
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 531 LRKSIGVV-------PQDTVLFNDTIFH-NIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582
+R+ +G+V P TVL N T+ +R E + + + + D +P
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 157
Query: 583 AKYSTVVGER 592
S +R
Sbjct: 158 DSLSGGQAQR 167
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKIEG 598
F + +TV+GE G+ + G
Sbjct: 145 KFAEQDNTVLGEGGVTLSG 163
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKIEG 598
F + +TV+GE G+ + G
Sbjct: 145 KFAEQDNTVLGEGGVTLSG 163
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 464 VHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+H +L++ +L+ +S + G+ + I+G SG GK+T+LR L SG I +
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64
Query: 520 GQDI--CEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG 556
G+ I L + +G + Q+ VLF T++ NI YG
Sbjct: 65 GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTL-ES 530
IL GV+ VVP G+ A++G +G+GKST+ ++L + G I +DG++I E++ E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 531 LRKSI 535
RK +
Sbjct: 78 ARKGL 82
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RK 533
+ G+ VP G+ V ++G +G+GK+T L + G I +GQDI + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 534 SIGVVPQDTVLFND-TIFHNIRYGRLSATEEE 564
I +VP+ +F + T++ N+ G + ++E
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKE 113
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L+ ++ + G+ +A++G SGSGKST+L + + SG I D +D+ E L ++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE--LPPKDRN 76
Query: 535 IGVVPQDTVLFND-TIFHNIRYG--RLSATEEEVYDAARRAA--IH-DTIMN-FPAKYS 586
+G+V Q+ L+ T++ NI + A EE+ R A +H D ++N +P + S
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLS 135
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 457 GSIQFDNV----HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512
G I+ NV H E+K L+ VS V+ G+ + + G +GSGKST+L+++ +
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 513 SGSIRIDGQDICEVTLESLRKSIGVV---PQDTVLFNDTIFHNIRY 555
SG + DG+ +R++IG+ P+D F + +F + +
Sbjct: 63 SGDVLYDGE---RKKGYEIRRNIGIAFQYPEDQ-FFAERVFDEVAF 104
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ + ++++Y L G++ + G+ AI+G +G GKST+ + SG I
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 519 DGQ--DICEVTLESLRKSIGVVPQ--DTVLFNDTIFHNIRYG--RLSATEEE----VYDA 568
D + D + LR+SIG+V Q D LF+ +++ ++ +G + E+E V +A
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA 127
Query: 569 ARRAAIH 575
+R I
Sbjct: 128 LKRTGIE 134
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 465 HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524
H E+K L+ VS V+ G+ + + G +GSGKST+L+++ + SG + DG+
Sbjct: 13 HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--- 69
Query: 525 EVTLESLRKSIGVV---PQDTVLFNDTIFHNIRY 555
+R++IG+ P+D F + +F + +
Sbjct: 70 RKKGYEIRRNIGIAFQYPEDQ-FFAERVFDEVAF 102
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENII--GVSYDEYRYKSVVKACQLQQDIT 143
Query: 580 NFPAKYSTVVGERGLKIEG 598
F + +TV+GE G+ + G
Sbjct: 144 KFAEQDNTVLGEGGVTLSG 162
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 459 IQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--- 512
I+ +++ YL K DG+S + AIVG S SGKSTI+ + ++ +
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 513 -SGSIRIDGQDICEVTLESLR----KSIGVVPQ 540
SG + G+D+ + E LR K I +VPQ
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
LD +S V +G+ I+G +G+GK+ L L+ SG I +DG+D+ +++ E +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 535 IGVVPQDTVLFND-TIFHNIRYG-RLSATEE--EVYDAARRAAIHDTIMNFPAKYS 586
I V Q+ LF + N+ +G R+ ++ V D AR I + P S
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLS 129
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523
+IL G+S V G+ V+I+G SGSGKST+L +L G + ++G+++
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
++ +N+ F Y E + ++F + G +A++G +G GKST+L LL G I
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQ 540
+ +SIG VPQ
Sbjct: 64 V-------------YQSIGFVPQ 73
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
LD V+ + G+ I+G SG+GK+T +R++ +G + D + + ++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 532 RKSIGVVPQDTVLF-NDTIFHNIRYG--RLSATEEE----VYDAARRAAIHDTIMNFPAK 584
+ IG+V Q L+ N T F NI + + ++EE V + A+ IH + +FP +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 585 YSTVVGER 592
S +R
Sbjct: 141 LSGAQQQR 148
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
LD V+ + G+ I+G SG+GK+T +R++ +G + D + + ++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 532 RKSIGVVPQDTVLF-NDTIFHNIRYG--RLSATEEE----VYDAARRAAIHDTIMNFPAK 584
+ IG+V Q L+ N T F NI + + ++EE V + A+ IH + +FP +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 585 YS 586
S
Sbjct: 141 LS 142
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDG 520
++H S + ++ IL G+S V G+ AI+G +GSGKST+ L ++ G++ G
Sbjct: 6 DLHVS-VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64
Query: 521 QDICEVTLES 530
+D+ ++ E
Sbjct: 65 KDLLALSPED 74
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDG 520
++H S + ++ IL G+S V G+ AI+G +GSGKST+ L ++ G++ G
Sbjct: 25 DLHVS-VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83
Query: 521 QDICEVTLES 530
+D+ ++ E
Sbjct: 84 KDLLALSPED 93
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
I+ ++V F Y + +L V+ GK +VG +GSGK+T+L++L +G I +
Sbjct: 12 IELNSVSFRYNGDY-VLKDVNAEFETGKIYVVVGKNGSGKTTLLKIL-AGLLAAAGEIFL 69
Query: 519 DGQDICEVTLESLRKSIGVVPQD 541
DG LRK++G V Q+
Sbjct: 70 DGSPADPFL---LRKNVGYVFQN 89
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
I+ NV +Y +I L V+ + G+ V+I+G SGSGKST+L ++ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRKS-IGVVPQ 540
+ ID D+ + L +R+ IG V Q
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
++ NV +Y +I L V+ + G+ V+I+G SGSGKST+L ++ G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRKS-IGVVPQ 540
+ ID D+ + L +R+ IG V Q
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYD 567
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN 111
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYD 567
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN 111
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYD 567
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN 111
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 459 IQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
IQ NV + ER L+ ++ V G+ V I+G +GSGK+T+LR + +SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAI-SGLLPYSGN 59
Query: 516 IRIDGQDICEV 526
I I+G ++ ++
Sbjct: 60 IFINGMEVRKI 70
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
I+ NV +Y +I L V+ + G+ V+I G SGSGKST L ++ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRKS-IGVVPQ 540
+ ID D+ + L +R+ IG V Q
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV--TLE 529
+ IL +S+ + G + G +G+GK+T+L +L SG++ + G+ +V + E
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAE 93
Query: 530 SLRKSIGVV 538
++R+ IG V
Sbjct: 94 TVRQHIGFV 102
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 675
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT 511
L + +P GK V + G SGSGKS++ +FDT
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL------AFDT 64
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 675
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 373
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N+ F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 187 IARTTASAFNELRTAVFSKVALRTIRSVSRK----------VFSHLHELDLRYHLSRETG 236
I + SA + L ++S ++ ++I + R+ V L + RYH E+
Sbjct: 196 IEKKIKSAISNLLN-IYSTLSGQSIEELERQYVFKADLAQVVIETLRPIQERYHHWMESE 254
Query: 237 ALNRIIDRGSRAINFILSSMV 257
L+R++D G+ N + S MV
Sbjct: 255 ELDRVLDEGAEKANRVASEMV 275
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 225 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 268
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 238 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 281
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 245 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 288
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 272 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 315
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 272 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 315
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 237 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 280
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRAGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAKT---GVVEVTME 110
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 242 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 285
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 459 IQFDNVHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514
I+ V LT+R ++ ++ + G+ + ++G SG GK+T LR++ + G
Sbjct: 7 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66
Query: 515 SIRIDGQDIC-----EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
I +D+ + + + +S V P TV N I+ ++ V AA
Sbjct: 67 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 570 RRAAIHDTIMNFPAKYS 586
I + + +PA+ S
Sbjct: 127 ELLQIEELLNRYPAQLS 143
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 459 IQFDNVHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514
I+ V LT+R ++ ++ + G+ + ++G SG GK+T LR++ + G
Sbjct: 8 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 67
Query: 515 SIRIDGQDIC-----EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
I +D+ + + + +S V P TV N I+ ++ V AA
Sbjct: 68 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 570 RRAAIHDTIMNFPAKYS 586
I + + +PA+ S
Sbjct: 128 ELLQIEELLNRYPAQLS 144
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEV 526
+ E L +S V AG+ + +VG +G+GKST+L + + GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSA 68
Query: 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTI 578
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 69 TKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL 120
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEV 526
+ E L +S V AG+ + +VG +G+GKST+L + + GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSA 68
Query: 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTI 578
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 69 TKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL 120
>pdb|4H8P|A Chain A, Neat5 Domain Of Isdx2, A B. Anthracis Hemophore In Complex
With Heme
Length = 129
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 293 YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF 340
Y+ TL ++W TKF+ N DA + D N V++ N+ F
Sbjct: 51 YIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLF 98
>pdb|4H8Q|A Chain A, Structure Of The Q29t Isdx2-neat5 Mutant In Complex With
Heme
Length = 129
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 293 YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF 340
Y+ TL ++W TKF+ N DA + D N V++ N+ F
Sbjct: 51 YIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLF 98
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTH------------------ 512
R LD + P G ++ G SGSGKST++ + L + H
Sbjct: 510 RNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADH 569
Query: 513 -SGSIRIDGQDICEVT--LESLRKSIGVVPQDTVLFNDTIFHNIR 554
+GS R+ G D+ ++T + +K IG P+ + +F +R
Sbjct: 570 TAGSARLGG-DLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVR 613
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAKT---GVVEVTME 110
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAKT---GVVEVTME 110
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAKT---GVVEVTME 110
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSG 497
I RDN N G+IQF V +Y+ + K D V+ P+GK + T SG
Sbjct: 115 IIKRDNIYDEN---GNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSG 166
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI---CEVTLES 530
+L+ ++ V P+ +V I G SG+GK + R L H+ S R D + C ES
Sbjct: 14 LLNEIAMVAPSDATVLIHGDSGTGKELVARAL------HACSARSDRPLVTLNCAALNES 67
Query: 531 LRKS 534
L +S
Sbjct: 68 LLES 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,586,579
Number of Sequences: 62578
Number of extensions: 541898
Number of successful extensions: 3671
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3530
Number of HSP's gapped (non-prelim): 130
length of query: 599
length of database: 14,973,337
effective HSP length: 104
effective length of query: 495
effective length of database: 8,465,225
effective search space: 4190286375
effective search space used: 4190286375
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)