Query 007539
Match_columns 599
No_of_seqs 426 out of 2240
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 11:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 1.9E-81 4E-86 669.7 55.8 474 106-599 133-608 (716)
2 COG2274 SunT ABC-type bacterio 100.0 5.3E-78 1.2E-82 668.7 59.5 511 56-599 92-613 (709)
3 KOG0057 Mitochondrial Fe/S clu 100.0 1.2E-76 2.6E-81 611.9 50.1 483 104-599 9-491 (591)
4 KOG0056 Heavy metal exporter H 100.0 2.4E-76 5.2E-81 596.5 28.4 480 109-599 199-678 (790)
5 TIGR01193 bacteriocin_ABC ABC- 100.0 3.5E-72 7.6E-77 640.5 61.6 512 56-599 92-615 (708)
6 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.6E-71 3.5E-76 635.6 60.8 512 56-599 92-619 (710)
7 TIGR03375 type_I_sec_LssB type 100.0 9.5E-71 2.1E-75 627.3 61.7 514 56-599 79-605 (694)
8 TIGR02868 CydC thiol reductant 100.0 1E-69 2.2E-74 601.3 60.6 468 111-599 4-474 (529)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.1E-69 2.5E-74 617.7 62.7 506 56-599 78-592 (686)
10 KOG0055 Multidrug/pheromone ex 100.0 6.9E-69 1.5E-73 603.4 58.9 476 107-599 651-1130(1228)
11 TIGR01846 type_I_sec_HlyB type 100.0 2.4E-68 5.2E-73 607.2 62.0 509 56-599 78-597 (694)
12 PRK11174 cysteine/glutathione 100.0 3.1E-68 6.7E-73 596.7 61.0 471 108-599 10-489 (588)
13 TIGR00958 3a01208 Conjugate Tr 100.0 6.3E-67 1.4E-71 595.1 63.1 473 106-599 147-621 (711)
14 COG1132 MdlB ABC-type multidru 100.0 4.4E-66 9.6E-71 576.3 61.3 456 124-599 14-469 (567)
15 COG5265 ATM1 ABC-type transpor 100.0 9.1E-68 2E-72 529.3 32.4 401 199-599 2-403 (497)
16 PRK11160 cysteine/glutathione 100.0 1.7E-64 3.8E-69 562.8 61.3 472 109-599 5-479 (574)
17 TIGR02857 CydD thiol reductant 100.0 2E-64 4.2E-69 559.1 60.5 459 125-599 3-462 (529)
18 PRK11176 lipid transporter ATP 100.0 3.4E-64 7.4E-69 563.7 62.9 473 105-599 10-484 (582)
19 PTZ00265 multidrug resistance 100.0 1E-64 2.3E-69 607.5 62.0 470 108-599 813-1362(1466)
20 PRK10790 putative multidrug tr 100.0 1.7E-63 3.8E-68 558.5 63.2 472 105-599 8-480 (592)
21 TIGR02203 MsbA_lipidA lipid A 100.0 5.2E-63 1.1E-67 553.3 61.8 461 122-599 11-473 (571)
22 PRK13657 cyclic beta-1,2-gluca 100.0 1.7E-62 3.7E-67 549.8 62.8 471 106-599 5-475 (588)
23 TIGR01192 chvA glucan exporter 100.0 2.5E-62 5.3E-67 546.3 63.1 470 107-599 6-475 (585)
24 TIGR02204 MsbA_rel ABC transpo 100.0 1.1E-61 2.4E-66 543.0 62.6 472 108-599 6-480 (576)
25 COG4988 CydD ABC-type transpor 100.0 2.4E-61 5.1E-66 506.8 57.2 405 193-599 54-460 (559)
26 PRK10789 putative multidrug tr 100.0 1.4E-61 3E-66 539.4 58.1 450 135-599 5-455 (569)
27 KOG0055 Multidrug/pheromone ex 100.0 1.1E-62 2.4E-67 553.3 41.4 405 194-599 86-493 (1228)
28 TIGR01842 type_I_sec_PrtD type 100.0 9.9E-60 2.2E-64 522.4 59.9 453 123-599 4-458 (544)
29 TIGR00957 MRP_assoc_pro multi 100.0 9.6E-60 2.1E-64 570.5 60.3 401 194-599 1020-1425(1522)
30 COG4987 CydC ABC-type transpor 100.0 2.8E-59 6.1E-64 482.9 52.6 461 124-599 15-478 (573)
31 PLN03130 ABC transporter C fam 100.0 2.7E-58 5.9E-63 557.1 59.7 401 193-599 967-1378(1622)
32 PTZ00243 ABC transporter; Prov 100.0 9.8E-58 2.1E-62 551.6 61.0 393 202-599 1021-1449(1560)
33 PTZ00265 multidrug resistance 100.0 8.8E-58 1.9E-62 547.8 59.8 469 108-599 47-583 (1466)
34 PLN03232 ABC transporter C fam 100.0 4.2E-57 9.2E-62 546.7 58.5 400 194-599 965-1375(1495)
35 KOG0054 Multidrug resistance-a 100.0 7.5E-58 1.6E-62 526.2 48.4 400 193-599 872-1279(1381)
36 TIGR01194 cyc_pep_trnsptr cycl 100.0 1E-55 2.2E-60 490.5 56.3 455 109-599 6-474 (555)
37 COG4618 ArpD ABC-type protease 100.0 2.1E-55 4.6E-60 449.9 43.8 453 124-599 22-476 (580)
38 TIGR01271 CFTR_protein cystic 100.0 6.5E-54 1.4E-58 518.2 58.9 400 194-599 940-1357(1490)
39 PLN03232 ABC transporter C fam 100.0 8.9E-53 1.9E-57 509.2 58.6 441 123-599 299-744 (1495)
40 PLN03130 ABC transporter C fam 100.0 3.4E-52 7.4E-57 504.1 59.0 442 124-599 300-744 (1622)
41 PRK10522 multidrug transporter 100.0 7.6E-50 1.6E-54 443.4 56.0 440 122-599 10-453 (547)
42 TIGR00954 3a01203 Peroxysomal 100.0 3.3E-49 7.1E-54 444.5 55.4 470 105-599 76-586 (659)
43 KOG0054 Multidrug resistance-a 100.0 9.6E-48 2.1E-52 442.8 54.1 445 124-599 200-647 (1381)
44 TIGR00957 MRP_assoc_pro multi 100.0 2.9E-47 6.3E-52 461.9 60.0 454 105-599 305-764 (1522)
45 TIGR01271 CFTR_protein cystic 100.0 1.1E-44 2.4E-49 438.0 57.6 440 124-599 79-552 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 4.8E-43 1E-47 424.1 55.9 456 105-599 232-786 (1560)
47 COG4615 PvdE ABC-type sideroph 100.0 1.5E-30 3.2E-35 259.1 42.8 364 199-575 68-434 (546)
48 COG4178 ABC-type uncharacteriz 100.0 3.5E-27 7.5E-32 253.2 48.0 376 196-583 103-508 (604)
49 cd03289 ABCC_CFTR2 The CFTR su 100.0 4E-31 8.7E-36 266.5 15.3 141 457-599 1-142 (275)
50 PRK14257 phosphate ABC transpo 100.0 4.5E-28 9.8E-33 250.6 12.8 140 453-599 75-229 (329)
51 cd03244 ABCC_MRP_domain2 Domai 100.0 1.1E-27 2.4E-32 235.4 14.9 142 457-599 1-143 (221)
52 cd03254 ABCC_Glucan_exporter_l 99.9 1.3E-27 2.9E-32 236.1 14.5 143 457-599 1-143 (229)
53 cd03252 ABCC_Hemolysin The ABC 99.9 2.6E-27 5.6E-32 235.3 14.2 141 459-599 1-142 (237)
54 cd03253 ABCC_ATM1_transporter 99.9 3.1E-27 6.8E-32 234.6 14.6 141 459-599 1-141 (236)
55 cd03288 ABCC_SUR2 The SUR doma 99.9 4.7E-27 1E-31 236.1 15.2 144 455-599 16-160 (257)
56 cd03245 ABCC_bacteriocin_expor 99.9 1.6E-26 3.4E-31 227.1 15.5 142 458-599 2-144 (220)
57 COG1117 PstB ABC-type phosphat 99.9 6E-27 1.3E-31 216.6 10.9 134 458-599 7-153 (253)
58 cd03251 ABCC_MsbA MsbA is an e 99.9 1.6E-26 3.5E-31 229.2 14.9 141 459-599 1-142 (234)
59 cd03248 ABCC_TAP TAP, the Tran 99.9 1.7E-26 3.6E-31 227.8 14.7 144 456-599 9-154 (226)
60 COG2884 FtsE Predicted ATPase 99.9 3E-27 6.6E-32 214.6 8.5 125 459-583 2-136 (223)
61 COG1125 OpuBA ABC-type proline 99.9 5.8E-27 1.3E-31 222.0 10.1 124 459-583 2-134 (309)
62 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.7E-26 6E-31 228.1 14.0 141 459-599 1-143 (238)
63 cd03250 ABCC_MRP_domain1 Domai 99.9 6.1E-26 1.3E-30 220.2 13.1 127 459-599 1-131 (204)
64 cd03290 ABCC_SUR1_N The SUR do 99.9 1.2E-25 2.7E-30 220.3 13.5 139 460-599 2-144 (218)
65 KOG0060 Long-chain acyl-CoA tr 99.9 1.9E-22 4E-27 210.7 37.5 276 315-599 261-574 (659)
66 COG3839 MalK ABC-type sugar tr 99.9 2.1E-25 4.4E-30 226.2 13.7 123 458-583 3-132 (338)
67 COG1126 GlnQ ABC-type polar am 99.9 1.9E-25 4.2E-30 207.6 11.5 125 458-583 2-135 (240)
68 COG1116 TauB ABC-type nitrate/ 99.9 7.7E-25 1.7E-29 209.8 12.2 120 458-583 3-129 (248)
69 TIGR00960 3a0501s02 Type II (G 99.9 5E-25 1.1E-29 215.7 11.0 124 459-582 2-136 (216)
70 COG3638 ABC-type phosphate/pho 99.9 1.2E-24 2.5E-29 205.0 12.3 131 458-599 3-151 (258)
71 COG3842 PotA ABC-type spermidi 99.9 8.7E-25 1.9E-29 222.8 11.4 123 458-583 5-135 (352)
72 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.5E-24 5.5E-29 209.3 13.8 114 456-570 4-118 (207)
73 COG1120 FepC ABC-type cobalami 99.9 1.2E-24 2.5E-29 212.6 11.3 122 458-580 2-134 (258)
74 PRK13647 cbiO cobalt transport 99.9 1.5E-24 3.2E-29 219.8 12.2 126 458-583 4-137 (274)
75 COG1135 AbcC ABC-type metal io 99.9 1.8E-24 4E-29 211.2 11.8 130 459-599 2-145 (339)
76 COG1122 CbiO ABC-type cobalt t 99.9 3.6E-24 7.8E-29 209.2 13.5 125 458-582 3-136 (235)
77 cd03260 ABC_PstB_phosphate_tra 99.9 1.8E-24 3.9E-29 213.5 11.3 131 459-599 1-145 (227)
78 PRK13631 cbiO cobalt transport 99.9 5.2E-24 1.1E-28 219.6 15.2 135 458-599 21-180 (320)
79 TIGR02673 FtsE cell division A 99.9 2.5E-24 5.4E-29 210.5 11.5 124 459-582 2-135 (214)
80 PRK14269 phosphate ABC transpo 99.9 2.8E-24 6E-29 214.7 11.7 134 458-599 2-146 (246)
81 PRK13650 cbiO cobalt transport 99.9 3.3E-24 7.1E-29 217.9 12.4 125 458-582 4-138 (279)
82 cd03291 ABCC_CFTR1 The CFTR su 99.9 9.7E-24 2.1E-28 213.6 15.6 149 431-599 15-163 (282)
83 COG1127 Ttg2A ABC-type transpo 99.9 3.4E-24 7.3E-29 202.4 11.3 125 457-582 7-143 (263)
84 cd03226 ABC_cobalt_CbiO_domain 99.9 2.2E-24 4.8E-29 209.4 10.0 121 460-583 1-125 (205)
85 PF00664 ABC_membrane: ABC tra 99.9 1.6E-20 3.5E-25 188.0 38.4 272 129-413 3-275 (275)
86 cd03261 ABC_Org_Solvent_Resist 99.9 4.4E-24 9.5E-29 211.8 12.0 121 459-580 1-132 (235)
87 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.6E-24 7.8E-29 210.0 11.0 122 459-580 1-136 (218)
88 cd03292 ABC_FtsE_transporter F 99.9 4.3E-24 9.4E-29 208.8 11.5 124 459-582 1-134 (214)
89 PRK13635 cbiO cobalt transport 99.9 6.4E-24 1.4E-28 215.6 12.3 126 458-583 5-139 (279)
90 PRK10908 cell division protein 99.9 8.5E-24 1.8E-28 207.9 12.3 124 459-582 2-135 (222)
91 cd03256 ABC_PhnC_transporter A 99.9 9.7E-24 2.1E-28 210.2 12.4 130 459-599 1-148 (241)
92 TIGR02314 ABC_MetN D-methionin 99.9 8E-24 1.7E-28 219.4 11.9 124 459-582 2-138 (343)
93 TIGR02315 ABC_phnC phosphonate 99.9 1.2E-23 2.6E-28 209.8 12.8 130 459-599 2-149 (243)
94 PRK11629 lolD lipoprotein tran 99.9 7.8E-24 1.7E-28 209.7 11.3 131 458-599 5-149 (233)
95 COG1136 SalX ABC-type antimicr 99.9 2E-23 4.4E-28 200.0 13.7 124 459-582 2-140 (226)
96 PRK13652 cbiO cobalt transport 99.9 1.4E-23 3E-28 213.1 13.2 125 458-582 3-135 (277)
97 PRK14250 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 207.7 13.8 117 458-575 3-121 (241)
98 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.7E-23 3.7E-28 203.4 12.8 127 458-599 4-143 (254)
99 cd03263 ABC_subfamily_A The AB 99.9 9.1E-24 2E-28 207.4 10.9 119 459-578 1-127 (220)
100 PRK13632 cbiO cobalt transport 99.9 1.2E-23 2.6E-28 213.0 12.1 125 458-582 7-140 (271)
101 cd03266 ABC_NatA_sodium_export 99.9 1.2E-23 2.7E-28 206.2 11.8 129 459-599 2-140 (218)
102 cd03225 ABC_cobalt_CbiO_domain 99.9 9.1E-24 2E-28 206.0 10.8 123 460-582 1-132 (211)
103 PRK11650 ugpC glycerol-3-phosp 99.9 1E-23 2.2E-28 220.3 11.8 124 458-583 3-133 (356)
104 cd03259 ABC_Carb_Solutes_like 99.9 7.4E-24 1.6E-28 207.0 9.7 121 459-582 1-128 (213)
105 PRK13637 cbiO cobalt transport 99.9 1.5E-23 3.2E-28 213.8 11.9 133 458-599 2-148 (287)
106 cd03262 ABC_HisP_GlnQ_permease 99.9 1.3E-23 2.7E-28 205.4 10.9 122 459-581 1-132 (213)
107 PRK10247 putative ABC transpor 99.9 2.8E-23 6E-28 204.6 13.1 131 458-599 7-141 (225)
108 cd03268 ABC_BcrA_bacitracin_re 99.9 1.7E-23 3.7E-28 203.7 11.4 119 459-580 1-122 (208)
109 PRK14242 phosphate transporter 99.9 1.8E-23 3.8E-28 209.9 11.7 134 458-599 6-153 (253)
110 cd03258 ABC_MetN_methionine_tr 99.9 2.1E-23 4.6E-28 206.7 12.1 124 459-582 2-138 (233)
111 COG4619 ABC-type uncharacteriz 99.9 9.5E-24 2.1E-28 187.8 8.4 120 470-599 14-137 (223)
112 PRK10575 iron-hydroxamate tran 99.9 2.3E-23 4.9E-28 210.3 12.4 124 458-582 11-145 (265)
113 cd03264 ABC_drug_resistance_li 99.9 1.8E-23 3.8E-28 204.0 11.2 118 459-579 1-125 (211)
114 PRK13643 cbiO cobalt transport 99.9 3E-23 6.6E-28 211.6 13.2 117 459-575 2-134 (288)
115 PRK10744 pstB phosphate transp 99.9 3E-23 6.5E-28 208.9 13.0 135 457-599 12-160 (260)
116 PRK13646 cbiO cobalt transport 99.9 2.5E-23 5.4E-28 212.2 12.4 135 458-599 2-149 (286)
117 cd03231 ABC_CcmA_heme_exporter 99.9 4E-23 8.7E-28 199.8 13.1 118 459-578 1-119 (201)
118 cd03219 ABC_Mj1267_LivG_branch 99.9 1.2E-23 2.5E-28 208.9 9.4 98 459-557 1-100 (236)
119 TIGR02211 LolD_lipo_ex lipopro 99.9 2.6E-23 5.6E-28 204.4 11.7 122 459-580 2-137 (221)
120 PRK10584 putative ABC transpor 99.9 2.6E-23 5.6E-28 205.3 11.6 126 458-583 6-145 (228)
121 PRK13636 cbiO cobalt transport 99.9 3.5E-23 7.6E-28 210.7 12.9 131 458-599 5-145 (283)
122 cd03224 ABC_TM1139_LivF_branch 99.9 2.2E-23 4.7E-28 205.0 11.0 99 459-558 1-101 (222)
123 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.3E-23 5E-28 207.6 11.1 132 459-599 1-139 (242)
124 PRK13640 cbiO cobalt transport 99.9 4.4E-23 9.4E-28 209.9 13.2 126 457-582 4-141 (282)
125 COG3840 ThiQ ABC-type thiamine 99.9 2.1E-23 4.5E-28 188.2 9.4 120 459-583 2-128 (231)
126 PRK13644 cbiO cobalt transport 99.9 3.7E-23 8.1E-28 209.6 12.5 124 459-582 2-134 (274)
127 cd03301 ABC_MalK_N The N-termi 99.9 2.4E-23 5.2E-28 203.4 10.6 121 459-582 1-128 (213)
128 cd03296 ABC_CysA_sulfate_impor 99.9 3E-23 6.6E-28 206.3 11.3 121 458-581 2-133 (239)
129 PRK14237 phosphate transporter 99.9 4E-23 8.7E-28 208.7 12.2 135 457-599 19-167 (267)
130 PRK14235 phosphate transporter 99.9 3.6E-23 7.8E-28 209.0 11.9 135 457-599 18-167 (267)
131 PRK11153 metN DL-methionine tr 99.9 3E-23 6.6E-28 216.4 11.5 122 459-580 2-136 (343)
132 cd03235 ABC_Metallic_Cations A 99.9 1.8E-23 3.8E-28 204.3 9.0 116 460-581 1-129 (213)
133 PRK13634 cbiO cobalt transport 99.9 4E-23 8.7E-28 210.9 12.1 118 458-575 2-135 (290)
134 cd03293 ABC_NrtD_SsuB_transpor 99.9 2E-23 4.2E-28 205.0 9.4 119 459-582 1-129 (220)
135 PRK11247 ssuB aliphatic sulfon 99.9 5.6E-23 1.2E-27 205.8 12.7 125 458-599 12-137 (257)
136 PRK14273 phosphate ABC transpo 99.9 3.6E-23 7.9E-28 207.7 11.3 134 458-599 7-154 (254)
137 PRK11231 fecE iron-dicitrate t 99.9 5.4E-23 1.2E-27 206.5 12.6 122 458-580 2-134 (255)
138 TIGR00972 3a0107s01c2 phosphat 99.9 3.6E-23 7.8E-28 206.8 11.0 133 459-599 2-148 (247)
139 PRK11432 fbpC ferric transport 99.9 4E-23 8.7E-28 215.2 11.6 122 458-582 6-134 (351)
140 PRK13633 cobalt transporter AT 99.9 5.3E-23 1.1E-27 209.2 11.9 125 458-582 4-142 (280)
141 PRK14259 phosphate ABC transpo 99.9 9.6E-23 2.1E-27 206.1 13.7 135 457-599 12-158 (269)
142 PRK13540 cytochrome c biogenes 99.9 8.7E-23 1.9E-27 197.4 12.8 116 459-576 2-119 (200)
143 PRK13548 hmuV hemin importer A 99.9 9E-23 1.9E-27 205.1 13.4 122 458-580 2-130 (258)
144 TIGR03265 PhnT2 putative 2-ami 99.9 4.9E-23 1.1E-27 214.9 11.9 122 458-582 4-132 (353)
145 TIGR03005 ectoine_ehuA ectoine 99.9 4.8E-23 1E-27 206.6 11.3 123 459-582 1-144 (252)
146 PRK14236 phosphate transporter 99.9 6.9E-23 1.5E-27 207.6 12.5 136 456-599 23-172 (272)
147 PRK09536 btuD corrinoid ABC tr 99.9 6.3E-23 1.4E-27 216.4 12.5 122 458-580 3-135 (402)
148 PRK13642 cbiO cobalt transport 99.9 8.3E-23 1.8E-27 207.4 12.9 124 458-581 4-137 (277)
149 TIGR02982 heterocyst_DevA ABC 99.9 5.9E-23 1.3E-27 201.6 11.4 125 459-583 2-140 (220)
150 cd03265 ABC_DrrA DrrA is the A 99.9 7.7E-23 1.7E-27 200.8 12.0 122 459-582 1-129 (220)
151 PRK14267 phosphate ABC transpo 99.9 5.4E-23 1.2E-27 206.4 10.8 134 458-599 4-153 (253)
152 PRK14248 phosphate ABC transpo 99.9 7.5E-23 1.6E-27 206.9 11.8 134 458-599 21-168 (268)
153 PRK11124 artP arginine transpo 99.9 8.1E-23 1.7E-27 203.7 11.7 124 458-582 2-139 (242)
154 PRK14247 phosphate ABC transpo 99.9 6.7E-23 1.5E-27 205.3 11.0 134 458-599 3-150 (250)
155 TIGR01189 ccmA heme ABC export 99.9 9.2E-23 2E-27 196.9 11.2 120 459-580 1-123 (198)
156 PRK13639 cbiO cobalt transport 99.9 7.3E-23 1.6E-27 207.6 10.9 120 459-578 2-131 (275)
157 TIGR03873 F420-0_ABC_ATP propo 99.9 1.3E-22 2.9E-27 203.8 12.7 121 459-580 2-133 (256)
158 PRK14261 phosphate ABC transpo 99.9 8.9E-23 1.9E-27 204.7 11.3 134 458-599 6-153 (253)
159 PRK14240 phosphate transporter 99.9 1.1E-22 2.3E-27 203.8 11.8 135 457-599 2-150 (250)
160 PRK13651 cobalt transporter AT 99.9 1.4E-22 3.1E-27 207.8 12.8 118 458-575 2-155 (305)
161 PRK09493 glnQ glutamine ABC tr 99.9 1.1E-22 2.3E-27 202.6 11.5 121 459-580 2-132 (240)
162 PRK14249 phosphate ABC transpo 99.9 1.4E-22 3E-27 203.1 12.3 134 458-599 4-151 (251)
163 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.6E-22 3.5E-27 197.2 12.3 120 459-583 1-127 (211)
164 cd03218 ABC_YhbG The ABC trans 99.9 6.4E-23 1.4E-27 203.1 9.5 98 459-557 1-100 (232)
165 PRK14254 phosphate ABC transpo 99.9 1.9E-22 4E-27 205.4 13.1 135 457-599 38-184 (285)
166 cd03294 ABC_Pro_Gly_Bertaine T 99.9 5E-23 1.1E-27 208.2 8.8 123 460-583 26-159 (269)
167 PRK14251 phosphate ABC transpo 99.9 8E-23 1.7E-27 204.8 10.2 134 458-599 4-151 (251)
168 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.9E-22 4E-27 200.2 12.5 128 459-599 2-136 (236)
169 PRK13648 cbiO cobalt transport 99.9 1.8E-22 3.9E-27 204.2 12.5 123 458-580 7-138 (269)
170 PRK10253 iron-enterobactin tra 99.9 2.1E-22 4.5E-27 203.4 12.8 123 457-580 6-139 (265)
171 PRK14274 phosphate ABC transpo 99.9 1.3E-22 2.9E-27 204.1 11.3 134 458-599 12-159 (259)
172 PRK10851 sulfate/thiosulfate t 99.9 1.4E-22 3E-27 211.6 11.8 122 458-582 2-134 (353)
173 cd03300 ABC_PotA_N PotA is an 99.9 8.9E-23 1.9E-27 202.0 9.8 121 459-582 1-128 (232)
174 TIGR03410 urea_trans_UrtE urea 99.9 6.1E-23 1.3E-27 203.0 8.6 98 459-557 1-100 (230)
175 PRK13538 cytochrome c biogenes 99.9 1.9E-22 4.1E-27 195.6 11.8 120 459-580 2-125 (204)
176 cd03269 ABC_putative_ATPase Th 99.9 6.9E-23 1.5E-27 199.7 8.7 115 459-578 1-122 (210)
177 PRK09452 potA putrescine/sperm 99.9 2.4E-22 5.1E-27 210.9 13.3 123 458-583 14-143 (375)
178 TIGR01277 thiQ thiamine ABC tr 99.9 2.2E-22 4.8E-27 196.5 12.3 120 459-583 1-127 (213)
179 PRK14260 phosphate ABC transpo 99.9 1.4E-22 3.1E-27 203.9 11.2 134 458-599 7-154 (259)
180 PRK10895 lipopolysaccharide AB 99.9 2.5E-22 5.5E-27 200.0 12.9 134 458-599 3-141 (241)
181 TIGR01186 proV glycine betaine 99.9 9.1E-23 2E-27 212.6 10.1 114 470-583 4-128 (363)
182 PRK14252 phosphate ABC transpo 99.9 2.1E-22 4.5E-27 203.4 12.2 136 456-599 14-165 (265)
183 cd03246 ABCC_Protease_Secretio 99.9 1.8E-22 3.8E-27 190.5 11.0 95 459-553 1-96 (173)
184 PRK11831 putative ABC transpor 99.9 1.6E-22 3.5E-27 204.5 11.5 120 458-578 7-137 (269)
185 PRK13649 cbiO cobalt transport 99.9 2.8E-22 6.1E-27 204.1 13.2 99 458-556 2-110 (280)
186 TIGR03608 L_ocin_972_ABC putat 99.9 1.2E-22 2.6E-27 197.4 10.0 119 461-580 1-130 (206)
187 PRK11000 maltose/maltodextrin 99.9 2.1E-22 4.5E-27 211.9 12.5 122 458-582 3-131 (369)
188 PRK14266 phosphate ABC transpo 99.9 1.8E-22 3.9E-27 202.2 11.3 134 458-599 3-150 (250)
189 cd03257 ABC_NikE_OppD_transpor 99.9 4.2E-22 9.1E-27 196.7 13.7 98 459-556 2-108 (228)
190 PRK14262 phosphate ABC transpo 99.9 1.4E-22 3E-27 203.0 10.4 134 458-599 3-150 (250)
191 PRK14239 phosphate transporter 99.9 2.1E-22 4.6E-27 201.9 11.7 134 458-599 5-152 (252)
192 PRK14256 phosphate ABC transpo 99.9 2.4E-22 5.2E-27 201.5 12.0 135 457-599 3-152 (252)
193 cd03247 ABCC_cytochrome_bd The 99.9 1.4E-22 3E-27 192.2 9.7 94 459-553 1-95 (178)
194 PRK13638 cbiO cobalt transport 99.9 2.3E-22 5.1E-27 203.6 11.9 119 459-578 2-130 (271)
195 PRK14243 phosphate transporter 99.9 2.9E-22 6.2E-27 202.1 12.2 134 458-599 10-155 (264)
196 PRK14245 phosphate ABC transpo 99.9 1.9E-22 4.2E-27 201.9 10.7 134 458-599 3-150 (250)
197 PRK14264 phosphate ABC transpo 99.9 3.7E-22 7.9E-27 205.3 13.0 134 458-599 45-204 (305)
198 PRK14271 phosphate ABC transpo 99.9 2.7E-22 5.9E-27 203.4 11.9 134 458-599 21-167 (276)
199 PRK14253 phosphate ABC transpo 99.9 2.3E-22 5E-27 201.3 11.2 134 458-599 3-149 (249)
200 cd03234 ABCG_White The White s 99.9 9.9E-23 2.2E-27 200.9 8.3 95 459-556 4-105 (226)
201 TIGR03411 urea_trans_UrtD urea 99.9 2.8E-22 6.2E-27 199.8 11.6 99 458-557 2-102 (242)
202 TIGR03258 PhnT 2-aminoethylpho 99.9 2.1E-22 4.4E-27 210.6 11.0 124 457-583 4-136 (362)
203 PRK11614 livF leucine/isoleuci 99.9 2.8E-22 6.1E-27 199.1 11.5 99 458-557 5-105 (237)
204 PRK14244 phosphate ABC transpo 99.9 1.2E-22 2.6E-27 203.5 9.0 134 458-599 5-153 (251)
205 PRK14238 phosphate transporter 99.9 3.1E-22 6.8E-27 202.6 12.0 134 458-599 24-171 (271)
206 PRK11300 livG leucine/isoleuci 99.9 3.9E-22 8.5E-27 200.3 12.6 98 458-556 5-104 (255)
207 PRK10771 thiQ thiamine transpo 99.9 4.6E-22 1E-26 196.9 12.8 120 459-583 2-128 (232)
208 TIGR00968 3a0106s01 sulfate AB 99.9 3.5E-22 7.5E-27 198.4 11.8 121 459-582 1-128 (237)
209 PRK13539 cytochrome c biogenes 99.9 4.3E-22 9.4E-27 193.5 12.2 117 458-578 2-121 (207)
210 PRK14270 phosphate ABC transpo 99.9 3.5E-22 7.5E-27 200.2 11.9 134 458-599 4-151 (251)
211 PRK13547 hmuV hemin importer A 99.9 4.9E-22 1.1E-26 200.7 12.9 129 459-599 2-149 (272)
212 PRK10619 histidine/lysine/argi 99.9 3.8E-22 8.2E-27 200.6 11.8 121 457-578 4-145 (257)
213 PRK11264 putative amino-acid A 99.9 6.6E-22 1.4E-26 198.1 13.4 98 458-556 3-109 (250)
214 PRK11607 potG putrescine trans 99.9 4.3E-22 9.4E-27 209.3 12.4 123 458-583 19-148 (377)
215 PRK14268 phosphate ABC transpo 99.9 3.5E-22 7.5E-27 200.9 11.2 134 458-599 12-158 (258)
216 PRK13645 cbiO cobalt transport 99.9 6.5E-22 1.4E-26 202.2 13.1 101 457-557 5-116 (289)
217 TIGR01166 cbiO cobalt transpor 99.9 3.4E-22 7.4E-27 191.6 10.1 115 468-582 1-125 (190)
218 PRK13641 cbiO cobalt transport 99.9 5.9E-22 1.3E-26 202.2 12.4 118 458-575 2-135 (287)
219 PRK14258 phosphate ABC transpo 99.9 4.6E-22 1E-26 200.3 11.4 135 457-599 6-154 (261)
220 cd03229 ABC_Class3 This class 99.9 4.2E-22 9.2E-27 188.8 10.3 97 459-556 1-100 (178)
221 TIGR02769 nickel_nikE nickel i 99.9 6.9E-22 1.5E-26 199.5 12.4 132 458-599 2-154 (265)
222 PRK11248 tauB taurine transpor 99.9 5.7E-22 1.2E-26 198.8 11.5 116 459-580 2-124 (255)
223 PRK14241 phosphate transporter 99.9 4.9E-22 1.1E-26 199.9 11.0 134 458-599 4-152 (258)
224 PRK10070 glycine betaine trans 99.9 4.4E-22 9.6E-27 209.9 11.2 111 473-583 42-163 (400)
225 PRK14265 phosphate ABC transpo 99.9 9.4E-22 2E-26 199.3 13.0 135 457-599 19-165 (274)
226 PRK14255 phosphate ABC transpo 99.9 5.9E-22 1.3E-26 198.7 10.5 134 458-599 5-152 (252)
227 PRK13537 nodulation ABC transp 99.9 9.3E-22 2E-26 202.1 12.2 130 457-599 6-142 (306)
228 cd03230 ABC_DR_subfamily_A Thi 99.9 7.3E-22 1.6E-26 186.3 10.4 94 459-554 1-95 (173)
229 cd03299 ABC_ModC_like Archeal 99.9 8.2E-22 1.8E-26 195.4 11.3 120 459-582 1-127 (235)
230 TIGR01288 nodI ATP-binding ABC 99.9 8E-22 1.7E-26 202.7 11.5 96 458-555 4-100 (303)
231 PRK14263 phosphate ABC transpo 99.9 8.4E-22 1.8E-26 198.2 11.4 134 458-599 8-153 (261)
232 PRK14275 phosphate ABC transpo 99.9 6.9E-22 1.5E-26 201.5 10.7 135 457-599 38-186 (286)
233 cd03233 ABC_PDR_domain1 The pl 99.9 7.3E-22 1.6E-26 191.0 10.0 98 458-556 3-107 (202)
234 cd03223 ABCD_peroxisomal_ALDP 99.9 8.8E-22 1.9E-26 184.3 10.1 87 459-556 1-87 (166)
235 cd03228 ABCC_MRP_Like The MRP 99.9 1E-21 2.2E-26 185.0 10.6 95 459-553 1-96 (171)
236 PRK15079 oligopeptide ABC tran 99.9 1E-21 2.3E-26 203.4 11.6 117 458-574 8-150 (331)
237 TIGR03522 GldA_ABC_ATP gliding 99.9 1.2E-21 2.6E-26 201.1 11.9 129 458-599 2-137 (301)
238 PRK13541 cytochrome c biogenes 99.9 1.4E-21 3E-26 188.2 11.2 124 459-599 2-127 (195)
239 PRK13543 cytochrome c biogenes 99.9 2E-21 4.4E-26 189.8 12.5 115 458-576 11-129 (214)
240 PRK09984 phosphonate/organopho 99.9 2.1E-21 4.5E-26 195.8 12.8 122 458-580 4-148 (262)
241 TIGR01978 sufC FeS assembly AT 99.9 1.9E-21 4.2E-26 193.9 11.1 97 459-556 1-101 (243)
242 COG0410 LivF ABC-type branched 99.9 1.8E-21 3.9E-26 183.7 10.2 136 458-599 3-140 (237)
243 PRK14272 phosphate ABC transpo 99.9 2.3E-21 5.1E-26 194.4 11.5 98 458-556 4-109 (252)
244 PRK13536 nodulation factor exp 99.9 2.6E-21 5.5E-26 201.0 11.9 97 458-556 41-138 (340)
245 TIGR02324 CP_lyasePhnL phospho 99.9 2.4E-21 5.3E-26 190.7 11.2 118 459-576 2-140 (224)
246 PRK15056 manganese/iron transp 99.9 2.6E-21 5.6E-26 196.1 11.4 118 458-579 6-137 (272)
247 TIGR03740 galliderm_ABC gallid 99.8 2.6E-21 5.6E-26 190.4 11.0 117 459-580 1-120 (223)
248 PRK11144 modC molybdate transp 99.8 3.1E-21 6.7E-26 202.0 12.0 120 459-582 2-126 (352)
249 PRK15112 antimicrobial peptide 99.8 3.7E-21 8.1E-26 194.3 12.2 118 458-575 4-139 (267)
250 PRK14246 phosphate ABC transpo 99.8 2.2E-21 4.7E-26 194.8 10.1 134 458-599 10-157 (257)
251 COG1118 CysA ABC-type sulfate/ 99.8 1.8E-21 3.9E-26 189.8 8.6 122 458-582 2-135 (345)
252 PF00005 ABC_tran: ABC transpo 99.8 1.4E-21 3.1E-26 177.0 6.9 111 475-599 1-112 (137)
253 cd03213 ABCG_EPDR ABCG transpo 99.8 2.8E-21 6.1E-26 185.8 9.3 97 458-557 3-107 (194)
254 PRK10419 nikE nickel transport 99.8 3.4E-21 7.3E-26 194.7 10.0 98 458-555 3-114 (268)
255 COG1124 DppF ABC-type dipeptid 99.8 1E-20 2.2E-25 179.8 12.4 126 458-583 3-140 (252)
256 PRK10418 nikD nickel transport 99.8 7.1E-21 1.5E-25 191.0 11.4 130 458-599 4-144 (254)
257 COG1137 YhbG ABC-type (unclass 99.8 4.5E-22 9.6E-27 182.4 1.8 138 458-599 4-143 (243)
258 cd03215 ABC_Carb_Monos_II This 99.8 8.3E-21 1.8E-25 180.6 10.2 95 458-557 4-103 (182)
259 PRK11308 dppF dipeptide transp 99.8 1.5E-20 3.3E-25 194.6 12.2 118 458-575 5-144 (327)
260 KOG0064 Peroxisomal long-chain 99.8 6.3E-17 1.4E-21 167.3 38.4 270 317-599 301-616 (728)
261 TIGR03415 ABC_choXWV_ATP choli 99.8 9.1E-21 2E-25 198.5 10.4 112 471-582 36-162 (382)
262 TIGR01188 drrA daunorubicin re 99.8 8.2E-21 1.8E-25 195.2 9.8 110 467-578 2-118 (302)
263 PRK11701 phnK phosphonate C-P 99.8 2.4E-20 5.2E-25 187.6 12.9 135 458-599 6-155 (258)
264 COG1131 CcmA ABC-type multidru 99.8 2.4E-20 5.3E-25 189.9 12.9 118 458-576 4-128 (293)
265 PRK11022 dppD dipeptide transp 99.8 1.5E-20 3.2E-25 194.7 11.5 134 458-599 3-157 (326)
266 TIGR02142 modC_ABC molybdenum 99.8 1.4E-20 3E-25 197.4 11.4 117 463-582 4-129 (354)
267 PRK09544 znuC high-affinity zi 99.8 2.6E-20 5.7E-25 186.1 12.2 111 458-581 4-117 (251)
268 PRK15439 autoinducer 2 ABC tra 99.8 3.7E-20 8.1E-25 204.0 13.4 118 458-576 11-132 (510)
269 cd03232 ABC_PDR_domain2 The pl 99.8 2.3E-20 5.1E-25 179.1 10.2 95 458-556 3-103 (192)
270 cd03297 ABC_ModC_molybdenum_tr 99.8 3.4E-20 7.3E-25 181.3 11.2 124 460-599 3-135 (214)
271 CHL00131 ycf16 sulfate ABC tra 99.8 3.4E-20 7.4E-25 186.0 11.4 98 458-556 7-108 (252)
272 PRK09473 oppD oligopeptide tra 99.8 3.4E-20 7.4E-25 192.1 11.6 133 458-599 12-165 (330)
273 PRK09700 D-allose transporter 99.8 2.9E-20 6.3E-25 205.2 10.9 98 458-556 5-104 (510)
274 PRK15093 antimicrobial peptide 99.8 5.1E-20 1.1E-24 191.2 11.9 119 458-576 3-147 (330)
275 PRK09580 sufC cysteine desulfu 99.8 3.5E-20 7.5E-25 185.4 9.7 94 459-553 2-99 (248)
276 PRK11288 araG L-arabinose tran 99.8 3.6E-20 7.9E-25 203.8 10.7 99 458-557 4-104 (501)
277 PRK10762 D-ribose transporter 99.8 3.1E-20 6.8E-25 204.4 10.2 99 458-557 4-104 (501)
278 PRK03695 vitamin B12-transport 99.8 6.9E-20 1.5E-24 183.1 11.5 114 459-578 1-120 (248)
279 COG4559 ABC-type hemin transpo 99.8 1E-19 2.2E-24 168.5 11.4 119 459-578 2-129 (259)
280 PRK13549 xylose transporter AT 99.8 1.2E-19 2.5E-24 200.1 13.6 99 458-557 5-107 (506)
281 PRK10535 macrolide transporter 99.8 9E-20 2E-24 205.8 12.8 125 458-582 4-142 (648)
282 cd03214 ABC_Iron-Siderophores_ 99.8 5.7E-20 1.2E-24 174.6 9.2 80 460-540 1-80 (180)
283 TIGR02323 CP_lyasePhnK phospho 99.8 1.2E-19 2.5E-24 182.2 11.7 97 458-555 3-111 (253)
284 COG4181 Predicted ABC-type tra 99.8 1.2E-19 2.6E-24 162.3 8.5 125 458-582 6-144 (228)
285 TIGR00955 3a01204 The Eye Pigm 99.8 5.1E-20 1.1E-24 206.9 7.3 133 458-599 17-170 (617)
286 PRK10982 galactose/methyl gala 99.8 9.9E-20 2.1E-24 200.0 9.3 96 461-557 1-98 (491)
287 cd03267 ABC_NatA_like Similar 99.8 1.5E-19 3.1E-24 179.4 9.3 84 472-556 34-119 (236)
288 PRK10938 putative molybdenum t 99.8 3.4E-19 7.4E-24 195.8 12.3 120 458-580 3-131 (490)
289 TIGR00956 3a01205 Pleiotropic 99.8 3.9E-19 8.6E-24 214.6 13.6 131 458-599 759-905 (1394)
290 TIGR02633 xylG D-xylose ABC tr 99.8 2.6E-19 5.7E-24 197.2 11.1 98 459-557 2-103 (500)
291 PLN03211 ABC transporter G-25; 99.8 6.7E-19 1.5E-23 198.0 14.4 119 472-599 81-210 (659)
292 cd03217 ABC_FeS_Assembly ABC-t 99.8 3.5E-19 7.6E-24 172.1 10.4 94 459-553 1-98 (200)
293 COG0411 LivG ABC-type branched 99.8 9.4E-20 2E-24 173.4 6.2 97 459-556 5-103 (250)
294 PRK10261 glutathione transport 99.8 3.9E-19 8.5E-24 200.0 11.8 124 458-581 313-460 (623)
295 COG4525 TauB ABC-type taurine 99.8 4.6E-19 1E-23 161.9 9.0 115 458-577 3-125 (259)
296 cd03216 ABC_Carb_Monos_I This 99.8 5.3E-19 1.1E-23 165.0 9.5 81 459-540 1-82 (163)
297 PRK15134 microcin C ABC transp 99.8 5E-19 1.1E-23 196.1 10.2 117 458-575 275-415 (529)
298 TIGR01184 ntrCD nitrate transp 99.8 9.4E-19 2E-23 172.9 11.1 100 475-579 1-109 (230)
299 COG3845 ABC-type uncharacteriz 99.8 6.4E-19 1.4E-23 182.5 10.2 116 458-574 4-130 (501)
300 COG4175 ProV ABC-type proline/ 99.8 5.4E-19 1.2E-23 172.8 9.0 109 475-583 44-163 (386)
301 COG4604 CeuD ABC-type enteroch 99.8 3.9E-19 8.4E-24 162.7 7.2 117 459-576 2-127 (252)
302 PRK13549 xylose transporter AT 99.8 7.9E-19 1.7E-23 193.5 10.3 99 458-556 259-365 (506)
303 PRK09700 D-allose transporter 99.8 8.7E-19 1.9E-23 193.4 10.3 96 458-556 265-365 (510)
304 COG1129 MglA ABC-type sugar tr 99.8 2.4E-18 5.2E-23 181.9 12.8 100 458-558 8-109 (500)
305 TIGR03269 met_CoM_red_A2 methy 99.8 8.4E-19 1.8E-23 194.0 9.9 118 458-575 279-413 (520)
306 TIGR01257 rim_protein retinal- 99.8 1.4E-18 3.1E-23 210.6 12.4 131 457-599 927-1065(2272)
307 PRK10261 glutathione transport 99.8 7.7E-19 1.7E-23 197.6 9.4 118 458-575 12-156 (623)
308 COG4136 ABC-type uncharacteriz 99.8 1.3E-18 2.8E-23 152.3 8.6 123 458-583 2-133 (213)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.3E-18 2.9E-23 193.5 10.3 88 458-556 4-92 (552)
310 PRK15134 microcin C ABC transp 99.8 2E-18 4.4E-23 191.3 11.5 119 458-576 5-145 (529)
311 cd03236 ABC_RNaseL_inhibitor_d 99.8 1E-18 2.3E-23 174.6 7.7 116 462-578 4-133 (255)
312 PRK11819 putative ABC transpor 99.8 2.3E-18 5.1E-23 191.6 11.1 88 458-556 6-94 (556)
313 TIGR03269 met_CoM_red_A2 methy 99.8 1.9E-18 4.2E-23 191.1 9.9 120 459-579 1-163 (520)
314 cd00820 PEPCK_HprK Phosphoenol 99.8 8.9E-19 1.9E-23 148.5 5.5 76 472-555 2-77 (107)
315 TIGR02633 xylG D-xylose ABC tr 99.7 2.1E-18 4.5E-23 190.1 9.8 99 458-556 257-363 (500)
316 TIGR02770 nickel_nikD nickel i 99.7 2.1E-18 4.5E-23 170.5 8.0 116 474-599 1-129 (230)
317 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 3.2E-18 6.9E-23 168.4 8.3 86 459-556 23-108 (224)
318 TIGR01257 rim_protein retinal- 99.7 7E-18 1.5E-22 204.7 12.9 124 457-581 1936-2067(2272)
319 COG1101 PhnK ABC-type uncharac 99.7 2.4E-18 5.3E-23 159.7 6.5 128 470-599 17-152 (263)
320 PRK15064 ABC transporter ATP-b 99.7 6.7E-18 1.5E-22 187.2 11.1 86 459-556 2-88 (530)
321 COG4555 NatA ABC-type Na+ tran 99.7 3.9E-18 8.4E-23 156.9 7.4 130 459-589 2-142 (245)
322 COG4148 ModC ABC-type molybdat 99.7 6E-18 1.3E-22 162.8 8.1 107 477-583 16-127 (352)
323 cd03237 ABC_RNaseL_inhibitor_d 99.7 8.7E-18 1.9E-22 167.2 9.1 100 466-577 1-108 (246)
324 TIGR03771 anch_rpt_ABC anchore 99.7 7E-18 1.5E-22 165.9 8.0 96 480-580 1-109 (223)
325 PRK15064 ABC transporter ATP-b 99.7 1.8E-17 3.9E-22 183.7 12.3 106 458-575 319-428 (530)
326 PRK10762 D-ribose transporter 99.7 9.7E-18 2.1E-22 184.6 9.7 93 458-556 257-354 (501)
327 PRK10938 putative molybdenum t 99.7 1.2E-17 2.5E-22 183.6 9.7 118 458-576 260-392 (490)
328 PRK11288 araG L-arabinose tran 99.7 1.1E-17 2.3E-22 184.3 9.2 94 458-556 257-355 (501)
329 COG0444 DppD ABC-type dipeptid 99.7 7.8E-17 1.7E-21 160.2 12.4 124 459-582 2-151 (316)
330 COG4608 AppF ABC-type oligopep 99.7 3.7E-17 8E-22 159.1 9.5 96 458-583 4-108 (268)
331 PLN03140 ABC transporter G fam 99.7 5.8E-17 1.3E-21 195.4 13.1 133 457-599 866-1023(1470)
332 PRK13545 tagH teichoic acids e 99.7 7.7E-17 1.7E-21 172.3 12.4 111 458-581 21-140 (549)
333 COG1123 ATPase components of v 99.7 6.9E-17 1.5E-21 172.0 11.9 125 458-582 280-427 (539)
334 COG0396 sufC Cysteine desulfur 99.7 1.4E-16 3E-21 150.1 11.5 120 458-577 3-135 (251)
335 COG4133 CcmA ABC-type transpor 99.7 3.3E-17 7.2E-22 149.5 7.0 122 460-584 4-129 (209)
336 PRK11819 putative ABC transpor 99.7 9.1E-17 2E-21 178.9 11.8 105 458-574 324-434 (556)
337 cd00267 ABC_ATPase ABC (ATP-bi 99.7 8.1E-17 1.7E-21 149.4 9.4 80 460-540 1-80 (157)
338 PRK13546 teichoic acids export 99.7 9.6E-17 2.1E-21 161.4 10.3 104 472-599 37-147 (264)
339 PRK11147 ABC transporter ATPas 99.7 1.2E-16 2.5E-21 180.6 11.7 105 458-574 319-429 (635)
340 PLN03073 ABC transporter F fam 99.7 1.2E-16 2.7E-21 180.7 11.5 107 458-576 508-618 (718)
341 COG1123 ATPase components of v 99.7 1.6E-16 3.4E-21 169.3 11.1 123 458-580 5-148 (539)
342 PRK15439 autoinducer 2 ABC tra 99.7 1.2E-16 2.7E-21 176.1 10.7 92 458-555 268-364 (510)
343 PRK10982 galactose/methyl gala 99.7 1.3E-16 2.8E-21 175.3 10.6 92 458-552 250-346 (491)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2E-16 4.3E-21 176.1 12.2 105 458-574 322-432 (552)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 2.5E-16 5.5E-21 143.7 8.6 70 459-540 1-70 (144)
346 COG1119 ModF ABC-type molybden 99.7 3.2E-16 6.9E-21 149.4 9.2 96 457-553 30-129 (257)
347 PRK15177 Vi polysaccharide exp 99.6 1.6E-16 3.4E-21 155.0 6.8 103 474-599 2-108 (213)
348 PRK10636 putative ABC transpor 99.6 1.3E-15 2.9E-20 171.7 14.9 106 458-575 312-420 (638)
349 PRK13409 putative ATPase RIL; 99.6 4.6E-16 9.9E-21 173.0 10.8 107 458-579 340-448 (590)
350 COG1134 TagH ABC-type polysacc 99.6 7.3E-16 1.6E-20 147.2 7.7 98 472-580 40-143 (249)
351 COG4172 ABC-type uncharacteriz 99.6 4.8E-15 1E-19 149.5 13.5 122 457-579 275-420 (534)
352 TIGR00956 3a01205 Pleiotropic 99.6 6.1E-16 1.3E-20 187.1 8.5 120 472-599 74-213 (1394)
353 COG4152 ABC-type uncharacteriz 99.6 1.2E-15 2.6E-20 144.5 7.6 94 458-556 2-96 (300)
354 KOG0061 Transporter, ABC super 99.6 1.3E-15 2.9E-20 169.6 9.2 133 457-599 24-174 (613)
355 PLN03140 ABC transporter G fam 99.6 1.3E-15 2.9E-20 183.7 9.5 82 472-556 178-263 (1470)
356 COG4598 HisP ABC-type histidin 99.6 1.3E-15 2.8E-20 137.6 6.8 124 458-582 6-150 (256)
357 PRK13409 putative ATPase RIL; 99.6 6.3E-16 1.4E-20 171.9 5.0 112 462-577 77-205 (590)
358 PRK10636 putative ABC transpor 99.6 3.9E-15 8.5E-20 167.8 11.5 83 459-553 2-84 (638)
359 TIGR01187 potA spermidine/putr 99.6 1.2E-15 2.5E-20 158.3 6.2 91 490-582 1-98 (325)
360 COG4167 SapF ABC-type antimicr 99.6 3.5E-15 7.5E-20 135.1 8.0 103 473-576 27-140 (267)
361 cd03222 ABC_RNaseL_inhibitor T 99.6 2.2E-15 4.7E-20 141.8 7.0 68 462-543 4-71 (177)
362 COG0488 Uup ATPase components 99.6 2.6E-14 5.6E-19 155.3 15.6 109 457-576 320-430 (530)
363 COG0488 Uup ATPase components 99.6 5.6E-15 1.2E-19 160.4 10.0 89 458-558 3-92 (530)
364 COG4674 Uncharacterized ABC-ty 99.6 5.2E-15 1.1E-19 135.6 7.7 119 458-577 5-140 (249)
365 PRK11147 ABC transporter ATPas 99.5 3.5E-14 7.6E-19 160.5 11.6 84 458-553 3-87 (635)
366 COG4161 ArtP ABC-type arginine 99.5 3.2E-14 6.8E-19 126.3 8.2 124 458-582 2-139 (242)
367 PLN03073 ABC transporter F fam 99.4 1.8E-13 3.9E-18 155.2 7.4 96 457-553 176-288 (718)
368 cd03238 ABC_UvrA The excision 99.4 2.7E-13 5.9E-18 127.4 6.7 61 471-540 7-67 (176)
369 COG4778 PhnL ABC-type phosphon 99.3 8.3E-13 1.8E-17 118.5 4.9 84 458-541 4-101 (235)
370 COG4172 ABC-type uncharacteriz 99.3 2.2E-12 4.7E-17 130.5 7.8 119 458-576 6-146 (534)
371 COG4107 PhnK ABC-type phosphon 99.3 1.3E-12 2.9E-17 117.5 5.4 85 458-543 6-99 (258)
372 COG4138 BtuD ABC-type cobalami 99.3 3E-12 6.4E-17 115.5 6.9 124 459-599 4-129 (248)
373 COG4586 ABC-type uncharacteriz 99.3 1.8E-12 4E-17 125.0 5.0 66 473-539 38-103 (325)
374 KOG0059 Lipid exporter ABCA1 a 99.3 6.3E-12 1.4E-16 146.4 10.2 124 457-580 563-694 (885)
375 KOG0927 Predicted transporter 99.2 9E-12 2E-16 130.4 6.2 114 458-582 389-506 (614)
376 KOG0065 Pleiotropic drug resis 99.2 2.8E-11 6E-16 138.9 8.7 117 472-598 804-932 (1391)
377 COG3845 ABC-type uncharacteriz 99.2 2.1E-10 4.6E-15 119.7 14.5 101 457-557 256-362 (501)
378 TIGR03238 dnd_assoc_3 dnd syst 99.2 2E-11 4.4E-16 128.4 5.5 67 473-542 20-87 (504)
379 cd03278 ABC_SMC_barmotin Barmo 99.1 1.8E-11 3.9E-16 117.8 2.8 66 476-545 14-88 (197)
380 TIGR00767 rho transcription te 99.1 2.6E-10 5.6E-15 118.2 9.5 105 426-535 103-220 (415)
381 cd03272 ABC_SMC3_euk Eukaryoti 99.1 5.5E-11 1.2E-15 118.5 3.6 124 458-599 3-162 (243)
382 KOG2355 Predicted ABC-type tra 99.0 3.3E-10 7.1E-15 105.0 6.7 67 456-522 11-77 (291)
383 cd03279 ABC_sbcCD SbcCD and ot 99.0 5.4E-11 1.2E-15 116.1 0.5 120 458-599 5-127 (213)
384 PRK00300 gmk guanylate kinase; 98.9 6E-10 1.3E-14 108.0 3.7 79 483-570 3-93 (205)
385 cd03271 ABC_UvrA_II The excisi 98.9 5.8E-10 1.2E-14 111.3 3.1 117 473-599 9-173 (261)
386 KOG0066 eIF2-interacting prote 98.9 1.3E-09 2.7E-14 111.3 5.1 63 457-519 585-647 (807)
387 COG1129 MglA ABC-type sugar tr 98.9 4.7E-09 1E-13 111.9 9.2 133 458-599 263-405 (500)
388 cd03270 ABC_UvrA_I The excisio 98.9 2.7E-09 5.9E-14 105.0 6.5 33 470-502 6-38 (226)
389 PRK06002 fliI flagellum-specif 98.8 4.3E-09 9.2E-14 111.5 7.0 97 457-554 138-250 (450)
390 PRK11098 microcin B17 transpor 98.8 7.9E-05 1.7E-09 78.7 38.7 58 382-439 338-395 (409)
391 PRK12369 putative transporter; 98.8 0.00012 2.6E-09 75.7 37.7 57 382-438 264-320 (326)
392 PRK10733 hflB ATP-dependent me 98.8 1.7E-10 3.7E-15 130.0 -6.0 164 316-511 40-211 (644)
393 TIGR02858 spore_III_AA stage I 98.8 1E-08 2.2E-13 102.9 5.9 67 486-552 112-179 (270)
394 PF06472 ABC_membrane_2: ABC t 98.7 0.00011 2.4E-09 74.8 35.3 172 196-368 83-258 (281)
395 cd03273 ABC_SMC2_euk Eukaryoti 98.7 4.2E-09 9.1E-14 105.5 1.6 91 485-575 25-137 (251)
396 cd03240 ABC_Rad50 The catalyti 98.7 7.2E-09 1.6E-13 100.3 3.1 75 478-556 16-100 (204)
397 cd01130 VirB11-like_ATPase Typ 98.7 2.1E-08 4.6E-13 95.6 6.1 96 474-572 14-121 (186)
398 PRK01889 GTPase RsgA; Reviewed 98.7 1.4E-08 3.1E-13 106.4 4.9 100 474-576 184-287 (356)
399 cd03274 ABC_SMC4_euk Eukaryoti 98.7 1.9E-09 4.2E-14 104.9 -1.9 78 458-557 5-84 (212)
400 COG2401 ABC-type ATPase fused 98.6 1.5E-08 3.2E-13 103.3 3.5 91 473-578 397-499 (593)
401 PRK07196 fliI flagellum-specif 98.6 2.1E-08 4.6E-13 106.2 4.9 82 472-554 143-234 (434)
402 KOG0065 Pleiotropic drug resis 98.6 3.8E-08 8.2E-13 113.7 7.0 122 473-599 129-264 (1391)
403 COG4170 SapD ABC-type antimicr 98.6 3.6E-08 7.7E-13 91.9 4.9 104 473-576 21-147 (330)
404 PRK07721 fliI flagellum-specif 98.6 6.3E-08 1.4E-12 103.4 5.9 83 471-554 145-244 (438)
405 cd03283 ABC_MutS-like MutS-lik 98.5 4.1E-08 8.9E-13 94.5 3.0 86 471-573 13-102 (199)
406 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1.1E-07 2.4E-12 99.4 6.2 87 483-571 132-233 (358)
407 cd01131 PilT Pilus retraction 98.5 2.3E-07 5E-12 89.4 6.4 82 487-573 3-97 (198)
408 PRK08149 ATP synthase SpaL; Va 98.5 1.2E-07 2.7E-12 100.3 4.7 82 472-554 139-237 (428)
409 KOG0062 ATPase component of AB 98.5 4.7E-07 1E-11 95.1 8.5 113 457-580 361-477 (582)
410 PRK10078 ribose 1,5-bisphospho 98.4 2.3E-07 5E-12 88.5 5.4 55 484-541 1-55 (186)
411 PRK09825 idnK D-gluconate kina 98.4 2.8E-07 6.1E-12 86.9 5.8 67 484-556 2-70 (176)
412 COG1245 Predicted ATPase, RNas 98.4 3.1E-07 6.7E-12 95.0 6.5 82 463-558 340-427 (591)
413 KOG0062 ATPase component of AB 98.4 3E-07 6.6E-12 96.5 6.1 51 456-507 78-128 (582)
414 TIGR03263 guanyl_kin guanylate 98.4 2E-07 4.3E-12 88.3 3.7 78 485-571 1-90 (180)
415 cd01128 rho_factor Transcripti 98.4 2.2E-07 4.8E-12 92.2 4.1 111 480-599 11-133 (249)
416 TIGR00101 ureG urease accessor 98.4 4.7E-07 1E-11 87.2 5.8 102 487-598 3-106 (199)
417 cd00071 GMPK Guanosine monopho 98.4 1.3E-07 2.7E-12 85.5 1.5 73 488-569 2-87 (137)
418 PF13748 ABC_membrane_3: ABC t 98.3 0.0027 5.9E-08 61.2 30.4 36 122-157 7-42 (237)
419 PLN02796 D-glycerate 3-kinase 98.3 2.5E-07 5.5E-12 94.8 2.9 62 472-533 79-151 (347)
420 PRK06315 type III secretion sy 98.3 5.4E-07 1.2E-11 95.8 5.4 101 473-574 153-276 (442)
421 PRK15494 era GTPase Era; Provi 98.3 4.5E-07 9.7E-12 94.7 4.0 55 455-509 15-76 (339)
422 PRK00635 excinuclease ABC subu 98.3 9.9E-07 2.1E-11 107.2 7.5 40 458-503 600-639 (1809)
423 TIGR02322 phosphon_PhnN phosph 98.3 1.3E-06 2.9E-11 82.6 5.8 62 485-547 1-78 (179)
424 cd03275 ABC_SMC1_euk Eukaryoti 98.2 2.6E-07 5.7E-12 92.3 0.4 114 486-599 23-159 (247)
425 TIGR00235 udk uridine kinase. 98.2 1.1E-06 2.4E-11 85.3 4.4 29 483-511 4-32 (207)
426 PRK03846 adenylylsulfate kinas 98.2 1.2E-06 2.6E-11 84.4 4.4 56 483-542 22-78 (198)
427 TIGR02788 VirB11 P-type DNA tr 98.2 1.1E-06 2.4E-11 90.6 3.9 73 478-553 137-211 (308)
428 PRK05480 uridine/cytidine kina 98.2 2.4E-06 5.2E-11 83.1 5.8 69 483-572 4-78 (209)
429 TIGR03497 FliI_clade2 flagella 98.1 2E-06 4.4E-11 91.3 4.8 73 468-541 121-201 (413)
430 KOG0927 Predicted transporter 98.1 4.8E-06 1E-10 88.2 6.9 59 457-516 74-132 (614)
431 cd01136 ATPase_flagellum-secre 98.1 3E-06 6.6E-11 87.0 5.0 56 468-524 53-108 (326)
432 PRK07594 type III secretion sy 98.1 2.2E-06 4.8E-11 91.0 4.0 67 458-525 129-195 (433)
433 PRK06793 fliI flagellum-specif 98.0 7.1E-06 1.5E-10 87.2 6.7 68 458-526 130-197 (432)
434 PRK09862 putative ATP-dependen 98.0 4.4E-06 9.6E-11 90.7 5.1 65 461-526 187-251 (506)
435 TIGR02546 III_secr_ATP type II 98.0 4.7E-06 1E-10 89.1 5.2 77 470-547 131-213 (422)
436 PRK09518 bifunctional cytidyla 98.0 4.5E-06 9.8E-11 95.8 4.4 64 486-554 2-118 (712)
437 PRK09270 nucleoside triphospha 98.0 7.8E-06 1.7E-10 80.7 5.5 56 483-542 31-90 (229)
438 PRK06995 flhF flagellar biosyn 98.0 3.4E-06 7.5E-11 90.8 3.0 60 477-555 248-307 (484)
439 PRK10416 signal recognition pa 98.0 6.4E-06 1.4E-10 84.9 4.7 73 483-555 112-191 (318)
440 PLN02318 phosphoribulokinase/u 98.0 8.5E-06 1.8E-10 88.5 5.4 61 486-554 66-127 (656)
441 PRK07261 topology modulation p 98.0 7.5E-06 1.6E-10 76.9 4.4 64 486-551 1-69 (171)
442 PF13555 AAA_29: P-loop contai 97.9 1.1E-05 2.4E-10 61.3 4.3 36 477-512 14-50 (62)
443 PRK07960 fliI flagellum-specif 97.9 4.7E-06 1E-10 88.5 2.6 51 474-525 165-218 (455)
444 cd02026 PRK Phosphoribulokinas 97.9 1.1E-05 2.4E-10 81.5 5.1 55 487-543 1-55 (273)
445 cd03280 ABC_MutS2 MutS2 homolo 97.9 1.2E-05 2.5E-10 77.7 4.9 42 475-516 17-67 (200)
446 TIGR01026 fliI_yscN ATPase Fli 97.9 8.3E-06 1.8E-10 87.4 3.9 56 470-526 149-204 (440)
447 TIGR03496 FliI_clade1 flagella 97.9 1.1E-05 2.3E-10 85.7 4.4 66 459-525 112-177 (411)
448 PRK08472 fliI flagellum-specif 97.9 1E-05 2.2E-10 86.0 4.0 56 471-527 144-199 (434)
449 TIGR00630 uvra excinuclease AB 97.9 2.4E-05 5.2E-10 91.0 7.3 40 458-503 612-651 (924)
450 PRK09099 type III secretion sy 97.9 1.3E-05 2.9E-10 85.5 4.7 55 471-526 150-204 (441)
451 TIGR03498 FliI_clade3 flagella 97.9 1E-05 2.2E-10 85.9 3.8 56 471-527 127-182 (418)
452 PRK00023 cmk cytidylate kinase 97.8 1.4E-05 3.1E-10 78.5 4.1 70 485-554 4-91 (225)
453 PRK05688 fliI flagellum-specif 97.8 1.1E-05 2.3E-10 86.1 2.9 53 472-525 156-211 (451)
454 TIGR00554 panK_bact pantothena 97.8 2.4E-05 5.2E-10 79.3 5.3 45 487-531 64-110 (290)
455 PRK00349 uvrA excinuclease ABC 97.8 3E-05 6.5E-10 90.4 6.5 43 458-506 614-656 (943)
456 cd03284 ABC_MutS1 MutS1 homolo 97.8 1.4E-05 3E-10 78.0 3.1 72 472-557 18-90 (216)
457 cd01854 YjeQ_engC YjeQ/EngC. 97.8 2.1E-05 4.6E-10 80.2 4.1 79 475-555 152-239 (287)
458 PRK05922 type III secretion sy 97.8 5.3E-05 1.2E-09 80.5 7.1 54 472-526 145-198 (434)
459 cd03282 ABC_MSH4_euk MutS4 hom 97.7 2.2E-05 4.7E-10 75.9 3.8 36 471-506 15-50 (204)
460 PTZ00035 Rad51 protein; Provis 97.7 4.5E-05 9.8E-10 79.4 5.8 82 481-569 114-202 (337)
461 cd04104 p47_IIGP_like p47 (47- 97.7 2.9E-05 6.3E-10 74.7 3.9 34 487-520 3-36 (197)
462 PRK00635 excinuclease ABC subu 97.7 3.5E-05 7.5E-10 94.2 5.1 57 459-520 936-992 (1809)
463 cd03287 ABC_MSH3_euk MutS3 hom 97.7 3.3E-05 7.2E-10 75.5 3.9 47 472-518 18-65 (222)
464 PLN03046 D-glycerate 3-kinase; 97.7 3.7E-05 8E-10 80.4 4.1 48 487-534 214-264 (460)
465 PRK00098 GTPase RsgA; Reviewed 97.7 7E-05 1.5E-09 76.9 6.2 35 484-518 163-197 (298)
466 cd03243 ABC_MutS_homologs The 97.6 5.2E-05 1.1E-09 73.3 4.5 29 478-506 22-50 (202)
467 PRK14530 adenylate kinase; Pro 97.6 4.7E-05 1E-09 74.3 4.3 74 485-570 3-76 (215)
468 PF05992 SbmA_BacA: SbmA/BacA- 97.6 0.096 2.1E-06 53.0 33.4 54 383-436 257-310 (315)
469 cd00879 Sar1 Sar1 subfamily. 97.6 4.9E-05 1.1E-09 72.4 4.1 50 474-524 9-66 (190)
470 cd03285 ABC_MSH2_euk MutS2 hom 97.6 7.4E-05 1.6E-09 73.2 5.1 36 471-506 16-51 (222)
471 KOG0063 RNAse L inhibitor, ABC 97.6 0.0001 2.2E-09 76.2 6.1 75 466-553 343-423 (592)
472 PRK06731 flhF flagellar biosyn 97.6 3.8E-05 8.2E-10 77.1 3.0 64 458-521 40-114 (270)
473 cd04155 Arl3 Arl3 subfamily. 97.6 8.6E-05 1.9E-09 69.4 5.2 40 485-524 14-61 (173)
474 PRK08972 fliI flagellum-specif 97.6 6.8E-05 1.5E-09 79.5 4.6 46 473-521 151-196 (444)
475 cd02025 PanK Pantothenate kina 97.6 4.4E-05 9.4E-10 74.7 2.9 25 487-511 1-25 (220)
476 PRK11545 gntK gluconate kinase 97.6 4.3E-05 9.2E-10 71.2 2.6 59 491-555 1-61 (163)
477 cd03276 ABC_SMC6_euk Eukaryoti 97.6 4.3E-05 9.4E-10 73.5 2.7 69 476-546 13-82 (198)
478 PRK05541 adenylylsulfate kinas 97.5 3.5E-05 7.5E-10 72.7 2.0 43 482-524 4-47 (176)
479 cd01393 recA_like RecA is a b 97.5 9.4E-05 2E-09 72.7 5.1 83 481-570 15-104 (226)
480 PRK06820 type III secretion sy 97.5 9.6E-05 2.1E-09 78.9 5.4 51 470-521 149-199 (440)
481 PRK00889 adenylylsulfate kinas 97.5 5.4E-05 1.2E-09 71.3 3.2 40 483-522 2-42 (175)
482 PRK10751 molybdopterin-guanine 97.5 8.8E-05 1.9E-09 69.2 4.2 36 486-521 7-45 (173)
483 PF03193 DUF258: Protein of un 97.5 9.2E-05 2E-09 68.1 4.1 34 484-517 34-67 (161)
484 TIGR00368 Mg chelatase-related 97.5 6.7E-05 1.4E-09 82.0 3.7 57 471-527 197-253 (499)
485 PRK07429 phosphoribulokinase; 97.5 0.00012 2.6E-09 75.7 5.2 54 487-543 10-64 (327)
486 cd02023 UMPK Uridine monophosp 97.5 8.2E-05 1.8E-09 71.6 3.7 31 487-519 1-31 (198)
487 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00016 3.4E-09 71.6 5.8 79 482-567 16-101 (235)
488 TIGR00455 apsK adenylylsulfate 97.5 4.6E-05 1E-09 72.4 1.8 44 481-524 14-58 (184)
489 TIGR00954 3a01203 Peroxysomal 97.5 0.36 7.9E-06 55.3 35.6 115 190-306 146-261 (659)
490 PRK06936 type III secretion sy 97.4 0.00013 2.8E-09 77.7 4.7 41 472-513 150-190 (439)
491 PLN02165 adenylate isopentenyl 97.4 0.00011 2.5E-09 75.2 4.1 45 483-527 41-89 (334)
492 TIGR00017 cmk cytidylate kinas 97.4 0.00015 3.3E-09 70.7 4.7 54 487-540 4-69 (217)
493 TIGR02239 recomb_RAD51 DNA rep 97.4 8.8E-05 1.9E-09 76.6 2.9 83 481-570 92-181 (316)
494 PRK08533 flagellar accessory p 97.4 0.00025 5.4E-09 70.0 6.0 53 458-520 7-60 (230)
495 PRK14723 flhF flagellar biosyn 97.4 9.5E-05 2.1E-09 83.5 3.1 51 474-524 174-226 (767)
496 PRK14722 flhF flagellar biosyn 97.4 0.0001 2.2E-09 77.2 2.8 42 473-514 125-166 (374)
497 TIGR00606 rad50 rad50. This fa 97.4 0.00031 6.6E-09 86.3 7.3 79 458-542 5-88 (1311)
498 PRK13477 bifunctional pantoate 97.3 0.00018 3.9E-09 78.3 4.6 47 470-517 270-319 (512)
499 PRK13851 type IV secretion sys 97.3 0.00019 4.2E-09 74.6 4.6 41 481-521 158-198 (344)
500 PRK09183 transposase/IS protei 97.3 0.00011 2.4E-09 73.7 2.1 58 460-518 73-135 (259)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-81 Score=669.68 Aligned_cols=474 Identities=26% Similarity=0.370 Sum_probs=412.0
Q ss_pred HHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHH
Q 007539 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (599)
Q Consensus 106 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (599)
..+++++.|.+ +.++++..+++++++.++..+..|.+.+.++|.+.........+. .. .+ . +
T Consensus 133 ~~~~rl~~l~~-----~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~---~~--~~-----~---l 194 (716)
T KOG0058|consen 133 TLLKRLLGLLK-----PEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALK---RA--CT-----I---L 194 (716)
T ss_pred hHHHHHHHHhc-----hhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHH---HH--HH-----H---H
Confidence 36778888887 457778888888889999999999999999998864111111000 00 00 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007539 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (599)
Q Consensus 186 ~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (599)
.++..+..+++.+|.+++..++.++..++|..+|+++++++.+|||.+.+||+.+|++.|+..+...+...+...+..++
T Consensus 195 ~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~ 274 (716)
T KOG0058|consen 195 LGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLV 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11122345778899999999999999999999999999999999999999999999999999988887777777777766
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHH
Q 007539 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (599)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~ 345 (599)
..+..+ .++++++|.++.+.++.+++++++...+.++.++..++.+++.++.++...|.+++++|||+|+.|+.+.+||
T Consensus 275 ~~~g~~-~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry 353 (716)
T KOG0058|consen 275 QGFGGL-GFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRY 353 (716)
T ss_pred HHHHhH-HHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHH
Confidence 554433 4556678999998888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (599)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 425 (599)
.+..++..+...|.....+.+....++........++++|++++.+|+||.|++++|+.|...+..++..++.+|.++++
T Consensus 354 ~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmk 433 (716)
T KOG0058|consen 354 NKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMK 433 (716)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777766666666666666677778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
+.++.+|++|+++++|..+......|. ...|.|+|+||+|+||. +.+||+|+||+|+|||+||+||||||||||+++
T Consensus 434 gvGAs~rvFel~dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 434 GVGASERVFELMDRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred hcchHHHHHHHhccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHH
Confidence 999999999999999876554222232 45689999999999984 558999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcC
Q 007539 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
||.|||+|++|+|++||+||++++..+||++||+|.|||.||++||+|||.||.++++||||++|+++|++||||.++|+
T Consensus 513 LL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~ 592 (716)
T KOG0058|consen 513 LLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPD 592 (716)
T ss_pred HHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccCCCC
Q 007539 584 KYSTVVGERGLKIEGK 599 (599)
Q Consensus 584 G~dT~vgE~G~~LSG~ 599 (599)
||||.|||+|.+||||
T Consensus 593 gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 593 GYNTVVGEKGSQLSGG 608 (716)
T ss_pred ccccccCCccccccch
Confidence 9999999999999998
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5.3e-78 Score=668.70 Aligned_cols=511 Identities=25% Similarity=0.358 Sum_probs=424.7
Q ss_pred CCccccccccCCcchhhhh----hccccCC-----CccccccCCccCCCCChhhcchhHHHHHHHHHHhhcccChhhHHH
Q 007539 56 RFSPITSFLSDSASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLR 126 (599)
Q Consensus 56 ~~~~~~~~~~d~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 126 (599)
+.+++++++.||+.|++.+ |++.|+| +|.++. +..+ + ....+..+++.++ +++..
T Consensus 92 ~~~~~~~~v~dp~~g~~~l~~~e~~~~~tg~~l~l~~~~~~--~~~~-----~----~~~~~~~f~~~~~-----~~~~~ 155 (709)
T COG2274 92 KIDKNKVVVLDPAKGIRRLSLEEFEKLWTGIALLLAPTASR--KFKD-----I----PPFGLSWFIPLLF-----KYRRL 155 (709)
T ss_pred EecCCeEEEEeCCCCcEEcCHHHHHHhhheeEEEEeccccc--cccc-----c----cccchHhHHHHHH-----hhHHH
Confidence 4677789999999999988 8888997 565442 0000 1 1122344555555 44556
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (599)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~ 206 (599)
+.-.++..++..+.+++.|++.+.++|.+...... ..+..+ .+++.+..+...++..+|++++.+.
T Consensus 156 l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~-------~tL~vl-------~ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 156 LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR-------STLTVL-------AIGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch-------hHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778889999999999999998643221 111111 1111222234467888999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007539 207 ALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV-FNVVPTILEISMVSGILAYKFGAPFAWI 285 (599)
Q Consensus 207 ~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~il~~~~~~~l~~~ 285 (599)
+.|+..++..++|+|++++|+.||+++++||+.+|+++..+ +..++...+ ..+++.++. ++.+.+++.++|+++|+
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~el~~-Ir~flt~~~l~~iiD~~~~--~i~l~vm~~ys~~L~li 298 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQ-IREFLTGSILTLIIDLLFA--LIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986544 444444333 333333322 23334566678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 286 TSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365 (599)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (599)
.++.+++++++..+..+..++..++..+..++.++.+.|++.|+++||+.+.|+++..+|++...++.+...+..+....
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99988888888888777776666666667778889999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007539 366 LNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQD 445 (599)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 445 (599)
.+....++..+....++|+|++++++|++|+|++++|.++..++..|+..+.+.+.++++...+.+|+.++++.++|.+.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 446 RDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 446 ~~~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
+......+...|+|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+.
T Consensus 459 ~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 459 DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 33223334456899999999999865 46999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 525 ~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++++++|++|+||+||++||+|||+|||++++|++++||+++||+.|++||||+++|+||||+|||+|.+||||
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-76 Score=611.93 Aligned_cols=483 Identities=64% Similarity=0.975 Sum_probs=441.6
Q ss_pred hHHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHH
Q 007539 104 DMKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLI 183 (599)
Q Consensus 104 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (599)
++...+.+..|.|.+.+|..+.+.+.++++++.+-.....+|++++..+|......+.. +.+......++
T Consensus 9 ~~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~----------a~~~~~~~~~~ 78 (591)
T KOG0057|consen 9 KLKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP----------AVLSTITALLA 78 (591)
T ss_pred hhHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc----------chhhhhhHHHH
Confidence 36778899999998888888888888888888889999999999999999874221111 11222345667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007539 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPT 263 (599)
Q Consensus 184 ~~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~ 263 (599)
+|+++++...+++.+|...+.++.+++.++...++|+|++.++.++|.+..+|++.++++|.++.+..++..++.+++|.
T Consensus 79 ~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~ 158 (591)
T KOG0057|consen 79 GYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPT 158 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHH
Q 007539 264 ILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAE 343 (599)
Q Consensus 264 ~~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~ 343 (599)
++.+.++.+.+.+.+++.++++.+..+..|..+.+.+..|+.+++++++++.+++...+.|.+.|.++||+||.|+++.+
T Consensus 159 ~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~ 238 (591)
T KOG0057|consen 159 LFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEAS 238 (591)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHH
Confidence 99988888888888888888888888888988888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 344 QYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRET 423 (599)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~ 423 (599)
+|+....++.++..+..+..++.++++..+++...+.+++++...+.+|.||+|+++...++.+++..|+..++..+.++
T Consensus 239 ~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~ 318 (591)
T KOG0057|consen 239 RYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYREL 318 (591)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 424 VQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 424 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
.+++.+++.++...+...++.+. +.+....++.|+|+||+|+|++++++|+++||+|++||+|||||+|||||||+++
T Consensus 319 ~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr 396 (591)
T KOG0057|consen 319 RQALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILR 396 (591)
T ss_pred HHHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 99999999888776554433221 2233334568999999999998888999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcC
Q 007539 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+|+||++ ++|+|+|||+|+++++++++|+.|||||||..|||+||.+||.||+|++++||+.++||+|++||.|.+||+
T Consensus 397 ~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~ 475 (591)
T KOG0057|consen 397 LLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPD 475 (591)
T ss_pred HHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccc
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccCCCC
Q 007539 584 KYSTVVGERGLKIEGK 599 (599)
Q Consensus 584 G~dT~vgE~G~~LSG~ 599 (599)
||+|.|||+|..||||
T Consensus 476 GY~T~VGerG~~LSGG 491 (591)
T KOG0057|consen 476 GYQTLVGERGLMLSGG 491 (591)
T ss_pred cchhhHhhcccccccc
Confidence 9999999999999998
No 4
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-76 Score=596.49 Aligned_cols=480 Identities=45% Similarity=0.732 Sum_probs=417.8
Q ss_pred HHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHH
Q 007539 109 RTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIA 188 (599)
Q Consensus 109 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 188 (599)
+....|+|...++..+.+.+..++++.+.-+.....|.+.++++|.+....... ....+.. +.+....+..
T Consensus 199 ~~~~~ylwp~~~~alql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~----~~~~~~~-----v~L~flqg~g 269 (790)
T KOG0056|consen 199 RTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQ----YSLVFLY-----VFLKFLQGGG 269 (790)
T ss_pred EEeccccccCCCcchhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhh----HHHHHHH-----HHHHHHhcCC
Confidence 345677775444444555566666667777888889999999999886321110 0011111 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 189 RTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (599)
Q Consensus 189 ~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (599)
. ...+++.+|++++..+.+-..+++..++|+|+++++++|+.++.+|++.+.+++.++.+. ++...+.++.|.++.+.
T Consensus 270 t-gsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~ 347 (790)
T KOG0056|consen 270 T-GSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLG 347 (790)
T ss_pred c-cccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhh
Confidence 1 224678899999999999999999999999999999999999999999999999888776 77888899999998887
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHH
Q 007539 269 MVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEF 348 (599)
Q Consensus 269 ~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~ 348 (599)
+.++.+.+.+++++.+++++.+.++....+.+..|+.+.++++....++......|++-|.+|||.||+|+++.++|.+.
T Consensus 348 va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 348 VAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 76666666778888888888888888888888889999999988888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 349 LRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (599)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 428 (599)
..+|.+...|......+++..++.++.+.+....++++|.+..+.+|+|+++.|.+|+.++..|++.++..+..+|.+..
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfi 507 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFI 507 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhh
Confidence 99999999888888888888888888887777777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 429 DMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 429 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
++|+++++++++++..+.++..|.....|.|+|+||+|+|++++|+|+||||+++||+++|+|||||+||||++++|.||
T Consensus 508 DmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred hHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 99999999999988777777667777789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccc
Q 007539 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (599)
Q Consensus 509 y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~ 588 (599)
||.++|+|.|||+||+.+..+++|++||+||||..|||+||.+||+|++|++++||+++|++.|++||-|.++|+||+|.
T Consensus 588 fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~ 667 (790)
T KOG0056|consen 588 FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTR 667 (790)
T ss_pred hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCC
Q 007539 589 VGERGLKIEGK 599 (599)
Q Consensus 589 vgE~G~~LSG~ 599 (599)
|||||.+||||
T Consensus 668 VGERGLkLSGG 678 (790)
T KOG0056|consen 668 VGERGLKLSGG 678 (790)
T ss_pred hhhcccccCCc
Confidence 99999999998
No 5
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.5e-72 Score=640.47 Aligned_cols=512 Identities=19% Similarity=0.271 Sum_probs=406.9
Q ss_pred CCccccccccCC--cchhhhh----hccccCC-----CccccccCCccCCCCChhhcchhHHHHHHHHHHhhcccChhhH
Q 007539 56 RFSPITSFLSDS--ASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFR 124 (599)
Q Consensus 56 ~~~~~~~~~~d~--~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (599)
+.+++++++.|| +.|++.+ |++.|+| +|+++|.++. + ....++.++++++ +++
T Consensus 92 ~~~~~~~~i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~~-------~----~~~~~~~~~~~~~-----~~~ 155 (708)
T TIGR01193 92 GVTKNHLIIADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPIK-------E----KENSLLKFIPLIT-----RQK 155 (708)
T ss_pred EEeCCEEEEEcCCcccCCEEecHHHHHhhCCCEEEEEEecccccccc-------c----ccchHHHHHHHHH-----HHH
Confidence 467889999999 8999877 8899999 7887772110 0 1123456666665 446
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (599)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~ 204 (599)
+.+...+++.++..++.++.|++++.++|.+..... .. .+..+. ..++... .+..++.+++.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~~------~l~~~~----~~~~~~~---~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 156 KLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-MG------TLGIIS----IGLIIAY---IIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hH------HHHHHH----HHHHHHH---HHHHHHHHHHHHHHH
Confidence 666667777777888899999999999998753211 10 111111 1111111 123456788889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007539 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (599)
Q Consensus 205 ~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~ 284 (599)
+++.++..++|.++|+|++++|+.||+++++|++.++++ +.+.+...+.......+..++.++ +.+++++.++|++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILV-IVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999998 455555544433333333332222 222334556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (599)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (599)
++++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+...
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666666666666666767778888999999999999999999999999999999988888777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007539 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (599)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 444 (599)
.......++..+...+++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+++|+.++++.+++.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 55544444444555666778999999999999999999999999999999999999999999999999999997765432
Q ss_pred CCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 445 DRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 445 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
......+.+...+.|+|+||+|+|++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 460 ~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 460 NKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred ccccccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 22111112223468999999999986678999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhceeeCCCCCCchhhHHHHhhcC-CCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 525 ~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g-~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.+++|++|+||||||+||+|||+|||+++ +|+++||++++|++.|+++|+|+++|+||||+|||+|.+||||
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 99999999999999999999999999999999 5889999999999999999999999999999999999999997
No 6
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.6e-71 Score=635.58 Aligned_cols=512 Identities=20% Similarity=0.248 Sum_probs=408.4
Q ss_pred CCccccccccCCcchhhhh----hccccCC-----CccccccCCccCCCCChhhcchhHHHHHHHHHHhhcccChhhHHH
Q 007539 56 RFSPITSFLSDSASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLR 126 (599)
Q Consensus 56 ~~~~~~~~~~d~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 126 (599)
+.+++++++.||+.|++.+ |++.|+| +|+++|.+ +......++.++++++ ++++.
T Consensus 92 ~~~~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~l~-----~~~~~ 155 (710)
T TIGR03796 92 GFRGGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQK-----------GGRKPSLLRALWRRLR-----GSRGA 155 (710)
T ss_pred EEeCCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECccccc-----------cCcCcccHHHHHHHHH-----HHHHH
Confidence 4688899999999999887 8899999 78888711 1111133556666665 34555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (599)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~ 206 (599)
+...+++.++..++.++.|++++.++|.+...... ..+..+. + .++. ...+..++.+++.++..++
T Consensus 156 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-------~~l~~~~---~-~~~~---~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 156 LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ-------DWLRPLL---L-GMGL---TALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-------hHHHHHH---H-HHHH---HHHHHHHHHHHHHHHHHHH
Confidence 56666677777888899999999999987532111 1111111 1 1111 1112346778899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007539 207 ALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWIT 286 (599)
Q Consensus 207 ~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~~~ 286 (599)
+.++..+++.++|+|++++|+.+|+++++|++.++++++ +.+..++...+..++..++.+++. .++++.++|+++++.
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~ 299 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFY-ALLMLLYDPVLTLIG 299 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877 455555443333333333333222 234455677777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 287 SLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFL 366 (599)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (599)
++.+++++++...+.+...+..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+...+.
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (710)
T TIGR03796 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQIL 379 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555555566666677788899999999999999999999999999999988888877777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007539 367 NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR 446 (599)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 446 (599)
.....++..+...+++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+++|+.++++.+++....
T Consensus 380 ~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 459 (710)
T TIGR03796 380 GVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLE 459 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 66555666566666777899999999999999999999999999999999999999999999999999999876543221
Q ss_pred C----C-CCCC-CCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 007539 447 D----N-AMPL-NLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (599)
Q Consensus 447 ~----~-~~~~-~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (599)
. . .... +...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++|
T Consensus 460 ~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 460 EEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred cccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 1 0 0111 222468999999999985 4689999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 520 G~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+|+++++.+++|++|+||||||+||+|||||||++++|+++||++++||+.++++|+|+++|+||||.+||+|.+||||
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
No 7
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=9.5e-71 Score=627.34 Aligned_cols=514 Identities=21% Similarity=0.257 Sum_probs=406.3
Q ss_pred CCcccc-ccccCCcch--hhhh----hccccCC-----CccccccCCccCCCCChhhcchhHHHHHHHHHHhhcccChhh
Q 007539 56 RFSPIT-SFLSDSASS--RSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEF 123 (599)
Q Consensus 56 ~~~~~~-~~~~d~~~~--~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (599)
+.++++ +++.||+.| ++.+ |+..|+| +|.++|.++.. + . .+...++.++++++ ++
T Consensus 79 ~~~~~~~~~i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~~----~-~---~~~~~~~~~~~~~~-----~~ 145 (694)
T TIGR03375 79 GIDEDGKARVLLPETGDGEQELSLDALEALYSGYAIFVRPQFRFDARAD----E-L---ISPRPKHWFWSTLK-----ES 145 (694)
T ss_pred EEcCCCcEEEEccCCCCCceEecHHHHHhhcCCeEEEEecccccccccc----c-c---cccccchHHHHHHH-----HH
Confidence 457777 999999999 8776 8888898 68777711110 0 0 01123445666665 34
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (599)
++.+...+++.++..++.++.|++++.++|.+..... .. .+..+. ++ ++... .+..++.+++.++.
T Consensus 146 ~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~------~l~~~~---~~-~~~~~---~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 146 WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FE------TLWVLA---IG-VALAI---VFDFVLKTLRSYFL 211 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-Hh------HHHHHH---HH-HHHHH---HHHHHHHHHHHHHH
Confidence 5666667777777888899999999999998753211 10 111111 11 11111 12346778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007539 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (599)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (599)
.+.+.++..++|.++|+|++++|+.| +++++|++.+++ +|.+.++.++.......+..++.+++. .++++.++|.++
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~ 288 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLF-LLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhHHH
Confidence 99999999999999999999999998 788999998888 567777766544333333333222222 233455677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
++.++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+..
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666666666666666777888899999999999999999999999999999999988888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007539 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (599)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 443 (599)
........++..+...+++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++.+..+++|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 66665555555556666777899999999999999999999999999999999999999999999999999999876543
Q ss_pred cCCCCCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 007539 444 QDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (599)
Q Consensus 444 ~~~~~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d 522 (599)
+........+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|
T Consensus 449 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 449 PEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 221111111223458999999999985 4689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 523 ICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 523 i~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++++.+++|++|+|||||+++|+|||+|||++++|++++|++++|++.++++|+|++||+||||.+||+|.+||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997
No 8
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1e-69 Score=601.30 Aligned_cols=468 Identities=21% Similarity=0.252 Sum_probs=369.8
Q ss_pred HHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHH
Q 007539 111 LASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIART 190 (599)
Q Consensus 111 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~ 190 (599)
++++++ ++++.++..+++.++.+++.++.|++++.++|.+.... .. ..+... +..++.+.+
T Consensus 4 l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-----~~~~~~----~~~~~~~~~--- 64 (529)
T TIGR02868 4 ILPLLQ-----PRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP--PV-----LYLSVA----AVAVRAFGI--- 64 (529)
T ss_pred HHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hh-----HHHHHH----HHHHHHHHH---
Confidence 445554 34566667777777788888999999999999764211 00 000000 011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 191 TASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (599)
Q Consensus 191 ~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (599)
+..++.+++.++..+++.++..++|.++|+|++++|..+|+++++|++.+++++|.+.++..+...+..++..++.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~ 144 (529)
T TIGR02868 65 GRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAA 144 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356677788888899999999999999999999999999999999999999999888876655444444444333222
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHH
Q 007539 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVT-QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFL 349 (599)
Q Consensus 271 ~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~ 349 (599)
.++++.++|.+++++++.++++.++...+. +..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..
T Consensus 145 -~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~ 223 (529)
T TIGR02868 145 -VAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAAD 223 (529)
T ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHH
Confidence 233445566666655554444333332232 222334455556667888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 350 RRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVD 429 (599)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~ 429 (599)
+++.+...+..+..+.......++..+....++++|++.+.+|.+|+|+++++..+...+..|+..+...+..++++.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (529)
T TIGR02868 224 RELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAA 303 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877776666655555555555666677888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCC--CCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 430 MKSMFQLLEEKADIQDRDN--AMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 430 ~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
.+|+.++++.+++...... ....++..+.|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+|+|+|
T Consensus 304 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 304 AERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred HHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 9999999977654222111 11111223579999999999876789999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCcccc
Q 007539 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (599)
Q Consensus 508 ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT 587 (599)
+|+|++|+|++||+|++++ .+++|++|+||||||+||+|||||||++|+|+++||++++|++.|+++|||++||+||||
T Consensus 384 ~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT 462 (529)
T TIGR02868 384 LLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDT 462 (529)
T ss_pred CCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccc
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccCCCC
Q 007539 588 VVGERGLKIEGK 599 (599)
Q Consensus 588 ~vgE~G~~LSG~ 599 (599)
+|||+|.+||||
T Consensus 463 ~ige~G~~LSGG 474 (529)
T TIGR02868 463 VLGEGGARLSGG 474 (529)
T ss_pred hhccccCcCCHH
Confidence 999999999997
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.1e-69 Score=617.71 Aligned_cols=506 Identities=21% Similarity=0.257 Sum_probs=397.1
Q ss_pred CCccccccccCCcchhh-hh----hccccCC---CccccccCCccCCCCChhhcchhHHHHHHHHHHhhcccChhhHHHH
Q 007539 56 RFSPITSFLSDSASSRS-IL----FSTSTST---KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLRV 127 (599)
Q Consensus 56 ~~~~~~~~~~d~~~~~~-~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 127 (599)
+.+++++++.||+.|++ .+ |+.. +| +..|++. + ++ ..++.++++.+ ++.++.+
T Consensus 78 ~~~~~~~~i~dP~~g~~~~~~~~e~~~~-~g~~~~~~~~~~----~-----~~-----~~~~~~~~~~~----~~~~~~~ 138 (686)
T TIGR03797 78 PVSRGGYEIFDPATGTRRRVDAAMAATL-APEAYMFYRPLP----D-----KA-----LGLRDLLRFAL----RGARRDL 138 (686)
T ss_pred EEcCCEEEEECCCCCCCcccCHHHHHhc-CCEEEEEecCCc----c-----cc-----ccHHHHHHHHH----hhHHHHH
Confidence 56889999999999997 55 6665 65 2222251 0 10 11333434422 1345666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 128 ITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVA 207 (599)
Q Consensus 128 ~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~~ 207 (599)
...+++.++..++.++.|++++.++|.+..... . ..+..+. ..+++. .++..++.+++.++..+++
T Consensus 139 ~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~------~~l~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 139 LAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-R------SLLVQIA----LALLAA---AVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-h------hHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 677777778888999999999999998863211 1 1111111 111111 1123466778889999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007539 208 LRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITS 287 (599)
Q Consensus 208 ~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~~~~ 287 (599)
.++..++|.++|+|++++|+.||+++++|++.++++ +.+.++.++.......+..++..+ +..++++.++|+++++++
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFAL-LNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887 455665554433333332222222 223344556777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 288 LSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLN 367 (599)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (599)
+++++++++.....+..++..++..+..++..+.+.|.++|+++||+++.|+++.++|++..+++.+...+..+...+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555555655666666667777888999999999999999999999999999999999888888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 007539 368 FGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRD 447 (599)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 447 (599)
....++..+...+++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+++|+.++++.+++.....
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 442 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 66555555666667778999999999999999999999999999999999999999999999999999998765432211
Q ss_pred CCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 448 NAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 448 ~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
. ......+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++++
T Consensus 443 -~-~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 520 (686)
T TIGR03797 443 -T-DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520 (686)
T ss_pred -C-CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC
Confidence 1 11122358999999999974 56899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 527 ~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+.+++|++|+||||||+||+|||+|||++++| ++||++++||+.|+++|+|+++|+||||++||+|.+||||
T Consensus 521 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred CHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 99999999999999999999999999999998 9999999999999999999999999999999999999997
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.9e-69 Score=603.39 Aligned_cols=476 Identities=26% Similarity=0.347 Sum_probs=383.2
Q ss_pred HHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHH
Q 007539 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (599)
Q Consensus 107 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (599)
.+.+++++.+ |+ |+.++++.+..++..+...+..+++..++..+..... +.+......+ ..++++++
T Consensus 651 s~~~i~k~~~----pe-~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~--~~~~~~~~~~------al~f~~l~ 717 (1228)
T KOG0055|consen 651 SFWRIFKLNK----PE-WPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD--DELKREVRAW------ALIFLGLG 717 (1228)
T ss_pred cHHHHHHhcc----ch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHH------HHHHHHHH
Confidence 3556667766 44 4444444444444333333444566666665542211 1111111111 11222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-cChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007539 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS-RETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (599)
Q Consensus 187 i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~-~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (599)
+ ...+...++.+++..+++++..++|.++|+++++++.+|||+ +++|.+.+|+..|...++..+..-+..++..+.
T Consensus 718 ~---~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~ 794 (1228)
T KOG0055|consen 718 I---VSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIA 794 (1228)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 2 224567788999999999999999999999999999999986 344999999999999888887776666776665
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHH
Q 007539 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (599)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~ 345 (599)
.+ ++..++.+.++|.++++++.+.|++.+..+...++.....++..++..+.+....|.+.||+||++|+.|+++.+.|
T Consensus 795 ~~-~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y 873 (1228)
T KOG0055|consen 795 AV-IIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELY 873 (1228)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHH
Confidence 44 33445677788999988888888777766666666666666666777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (599)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 425 (599)
.+.+++..+...+...+.++.....+.+.....++.+++|++++.+|.+++.+++-....+..-...+.......+++.+
T Consensus 874 ~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~k 953 (1228)
T KOG0055|consen 874 KEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISK 953 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 99999999998888888887777777777778888999999999999999999888776666666666777788889999
Q ss_pred HHHHHHHHHHHhcccccccCCC-CCCCCCCCCceEEEEEEEEeec--CCCcccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 426 SLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~--~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
+..++.++++++++++.++..+ .....+...|+|+|+||+|+|| ++.+||+|+||+|++||++||||||||||||++
T Consensus 954 a~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI 1033 (1228)
T KOG0055|consen 954 AKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI 1033 (1228)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHH
Confidence 9999999999999988654432 2212233568999999999998 456899999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCc
Q 007539 503 RLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 503 ~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
.||.|+|+|++|.|.|||+|++++++++||++||.|+|||.||++||||||+||.++++++||.+||+.|++|+||.+||
T Consensus 1034 ~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP 1113 (1228)
T KOG0055|consen 1034 SLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLP 1113 (1228)
T ss_pred HHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999966699999999999999999999999
Q ss_pred CccccccccCcccCCCC
Q 007539 583 AKYSTVVGERGLKIEGK 599 (599)
Q Consensus 583 ~G~dT~vgE~G~~LSG~ 599 (599)
+||||.|||+|.+||||
T Consensus 1114 ~GyDT~vGerG~QLSGG 1130 (1228)
T KOG0055|consen 1114 QGYDTRVGERGVQLSGG 1130 (1228)
T ss_pred CcccCccCcccCcCCch
Confidence 99999999999999998
No 11
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.4e-68 Score=607.22 Aligned_cols=509 Identities=22% Similarity=0.331 Sum_probs=402.8
Q ss_pred CCccccccccCCcch-hhhh----hccccCC-----CccccccCCccCCCCChhhcchhHHHHHHHHHHhhcccChhhHH
Q 007539 56 RFSPITSFLSDSASS-RSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRL 125 (599)
Q Consensus 56 ~~~~~~~~~~d~~~~-~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (599)
+++++++++.||+.| ++.+ |++.|+| +|++ +. + +. +...+..++++++ +++.
T Consensus 78 ~~~~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~-~~----~-----~~---~~~~~~~~~~~~~-----~~~~ 139 (694)
T TIGR01846 78 KLTANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRS-VA----G-----KA---LKFGFSWFIPAII-----RYRK 139 (694)
T ss_pred EEcCCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCc-cc----c-----cc---ccCcHHHHHHHHH-----HHHH
Confidence 567889999999998 6555 8888998 5554 41 0 00 0112445666665 3455
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 126 RVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSK 205 (599)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~ 205 (599)
.+...+++.++..++.++.|++++.++|.+..... .. .+..+. ..++.. .++..++.+++.++..+
T Consensus 140 ~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~------~l~~l~----~~~~~~---~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 140 QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LS------TLSVLA----LAMLAV---AIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hh------HHHHHH----HHHHHH---HHHHHHHHHHHHHHHHH
Confidence 56666777777788889999999999998753211 11 111111 111111 11234677889999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007539 206 VALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWI 285 (599)
Q Consensus 206 ~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~~ 285 (599)
++.++..++|.++|+|++++|+.+|+++++|++.++++ |.+.+..++.......+..++.+++. .++++.++|.++++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl~-d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li 283 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVR-ELEQIRNFLTGSALTVVLDLLFVVVF-LAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998885 66667665543333333222222222 23445567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 286 TSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365 (599)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (599)
+++.+++++++...+.+..++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++..+++.+...+..+....
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555555555555566778889999999999999999999999999999999998888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 007539 366 LNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQD 445 (599)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 445 (599)
......++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+++|+.++++.+++...
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 66666666666666677789999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 446 RDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 446 ~~~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
. .....+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 444 ~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 444 A-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred C-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 1 11112222468999999999975 457999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 525 ~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.+++|++|+|||||+++|++||+|||++++|+++++++++||+.++++|+|++||+||||.+||+|.+||||
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.1e-68 Score=596.74 Aligned_cols=471 Identities=18% Similarity=0.215 Sum_probs=364.9
Q ss_pred HHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHH
Q 007539 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (599)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (599)
++.+++|++ ++++.+++.+++.++..++.+..|++++.++|.+........ .+.... ..+++..
T Consensus 10 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~------~~~~~~----~~~~~~~- 73 (588)
T PRK11174 10 TRWLKQQSK-----PAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPRE------ALLPPF----ILLILLF- 73 (588)
T ss_pred hHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh------HHHHHH----HHHHHHH-
Confidence 566777776 557777778888888888999999999999997642111110 011111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007539 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (599)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (599)
++..++.+++.++..+++.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.++..+...+..++..++..
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~ 151 (588)
T PRK11174 74 --VLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVP 151 (588)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123456778888888999999999999999999999999999999999999999999988877665555555544433
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHH
Q 007539 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (599)
Q Consensus 268 ~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (599)
++. .++++.++|.+++++++++++.+++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|++
T Consensus 152 ~~~-~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 230 (588)
T PRK11174 152 LLI-LIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRS 230 (588)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHH
Confidence 222 2344556777776666655555555555555555556666677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHH
Q 007539 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDL---------VMVNGLLFQLSLPLNFLGS 418 (599)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l---------~~~~~~~~~~~~pl~~l~~ 418 (599)
..+++.+...+..+..........++..+...++++++++.+ .|.+|+|++ +++..+...+..|+..++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~ 309 (588)
T PRK11174 231 ASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGT 309 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999988887776665554444444333333333333444433 477888764 2233556678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcH
Q 007539 419 VYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGK 498 (599)
Q Consensus 419 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGK 498 (599)
.+..++++.++++|+.++++.+++..............++|+|+||+|.|++++++|+|+||+|+|||++||||+|||||
T Consensus 310 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGK 389 (588)
T PRK11174 310 FYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGK 389 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCH
Confidence 99999999999999999998764322111111111123479999999988766789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHH
Q 007539 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578 (599)
Q Consensus 499 STL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I 578 (599)
|||+++|+|+| |++|+|++||+|+++++.+++|++|+||||||+||+|||||||++|+|+++|||+++||+.|+++|||
T Consensus 390 STL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i 468 (588)
T PRK11174 390 TSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFL 468 (588)
T ss_pred HHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcCccccccccCcccCCCC
Q 007539 579 MNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 579 ~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++||+||||.|||+|.+||||
T Consensus 469 ~~lp~G~dT~vge~G~~LSGG 489 (588)
T PRK11174 469 PLLPQGLDTPIGDQAAGLSVG 489 (588)
T ss_pred HhcccccccccccCCCCCCHH
Confidence 999999999999999999997
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.3e-67 Score=595.12 Aligned_cols=473 Identities=23% Similarity=0.316 Sum_probs=380.6
Q ss_pred HHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHH
Q 007539 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (599)
Q Consensus 106 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (599)
..+++++++++ +.++.+...+++.++.+++.+..|++++.++|.+..... .. .+...+. ++..
T Consensus 147 ~~~~~l~~~~~-----~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~-~~------~~~~~~~----~~~~- 209 (711)
T TIGR00958 147 DLLFRLLGLSG-----RDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG-PP------ALASAIF----FMCL- 209 (711)
T ss_pred hHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HH------HHHHHHH----HHHH-
Confidence 35667777776 445666777778888889999999999999998753211 11 0111110 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007539 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (599)
Q Consensus 186 ~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (599)
..++..++..++..++.....++..++|.++|++++++|+.+|++.++|++.+++++|.+.++..+...+..++..++
T Consensus 210 --~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~ 287 (711)
T TIGR00958 210 --LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287 (711)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111224566778888889999999999999999999999999999999999999999988887776555555555544
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHH
Q 007539 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (599)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~ 345 (599)
.++..+ ++++.++|.++++.++.+++..++...+.+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|
T Consensus 288 ~~i~~~-~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~ 366 (711)
T TIGR00958 288 MLLGLL-GFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF 366 (711)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHH
Confidence 333322 3344567777766666655555555555555566666666777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (599)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 425 (599)
.+..+++.+...+.............++..+....++++|++++.+|.+|+|+++++..+...+..|+..+...+.++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~ 446 (711)
T TIGR00958 367 KEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQ 446 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877766655554444444444444555666788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
+.++.+|+.++++.+++.++.....+ +...+.|+|+||+|+||+ ++++|+|+||+|+|||++|||||||||||||++
T Consensus 447 ~~~a~~ri~~~l~~~~~~~~~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 525 (711)
T TIGR00958 447 AVGASEKVFEYLDRKPNIPLTGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAA 525 (711)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999987655332211111 123457999999999985 458999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcC
Q 007539 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||+||+|+++||++++|++.|++++||+++|+
T Consensus 526 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 605 (711)
T TIGR00958 526 LLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPN 605 (711)
T ss_pred HHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccCCCC
Q 007539 584 KYSTVVGERGLKIEGK 599 (599)
Q Consensus 584 G~dT~vgE~G~~LSG~ 599 (599)
||||.+||+|.+||||
T Consensus 606 GldT~ige~G~~LSGG 621 (711)
T TIGR00958 606 GYDTEVGEKGSQLSGG 621 (711)
T ss_pred ccCCcccCCCCcCCHH
Confidence 9999999999999997
No 14
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.4e-66 Score=576.33 Aligned_cols=456 Identities=30% Similarity=0.461 Sum_probs=372.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (599)
+ .+..++++.++..++.+..|++++.++|.+.. ... .........+.+.+ +..++.+...++.
T Consensus 14 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~------~~~~~~~~~~~~~~-------~~~v~~~~~~~~~ 76 (567)
T COG1132 14 K-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA---DLG------ELLELLLLLLLLAL-------LGGVLRALQSYLG 76 (567)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHH------HHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 5 66777777777888999999999999998751 000 00000000011111 1134455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007539 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (599)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (599)
.+.+.++..++|.++|++++++|+.+|++.++|++.+++++|.+.++..+......+...++.+ +...++++..+|.++
T Consensus 77 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 155 (567)
T COG1132 77 SRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL-IGSLVLLFSLSWRLA 155 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHH
Confidence 7777899999999999999999999999999999999999999888877665533333222222 222334455566676
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
++.++..+++.+....+.+..++..+..++..++..+.+.|.++|+++||+|+.++.+.+++++..+.+.+...+..+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (567)
T COG1132 156 LILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555555555544456666677777889999999999999999999999999999999988888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007539 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (599)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 443 (599)
....+....+..+....+++++.+.+..+.+++|+++++..+...+..|+..+...+..++.+..+++|+.++++.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 315 (567)
T COG1132 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 66666666677777777788888999999999999999999999999999999999999999999999999999986654
Q ss_pred cCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 007539 444 QDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (599)
Q Consensus 444 ~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di 523 (599)
.+.... .....++|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||++||+|+|+|++|+|++||+|+
T Consensus 316 ~~~~~~--~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 316 EDPPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred cCCCCC--CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 332221 223346899999999998778999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 524 CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 524 ~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++++.++||++|++||||++||+|||+|||++|+|+++|||+++||+.|++||||+++|+||||+|||+|.+||||
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgG 469 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469 (567)
T ss_pred hhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 15
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-68 Score=529.32 Aligned_cols=401 Identities=55% Similarity=0.865 Sum_probs=378.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007539 199 RTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKF 278 (599)
Q Consensus 199 r~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 278 (599)
|..++..+++...+.+.-+.|.|++++++.|+.++.+|.+.+.+.+..+.++.++..++.+++|.++.+..+++++++.+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45567778888888899999999999999999999999999999999999999999999999999999999998999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 007539 279 GAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALK 358 (599)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 358 (599)
+|+++.+.++.+.++.++......|+...++.++++.++++....|++-|.+++|.|+.|+++..+|+...+.|.++..|
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999988888889988888888899899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007539 359 TQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLE 438 (599)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 438 (599)
......+++.++..+++.....++..++..+..|++|+|+++....++.++..|++.++..+.++.++...+++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCCCCCCC-CCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 007539 439 EKADIQDRDNAMPLN-LKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (599)
Q Consensus 439 ~~~~~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~ 517 (599)
.+.+..+.+..++.+ ...+.|.|+||+|.|.+.+|+|+++||++++|+++||||+||+||||++++|.|||++++|.|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 887766555555554 3457899999999999899999999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCC
Q 007539 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIE 597 (599)
Q Consensus 518 idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LS 597 (599)
+||+|+++...+++|+.||+||||..||++||..||.||+|++++||+++|++.|++|+||+++|+||||.|||+|-+||
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS 401 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007539 598 GK 599 (599)
Q Consensus 598 G~ 599 (599)
||
T Consensus 402 gg 403 (497)
T COG5265 402 GG 403 (497)
T ss_pred Cc
Confidence 97
No 16
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.7e-64 Score=562.79 Aligned_cols=472 Identities=17% Similarity=0.232 Sum_probs=370.2
Q ss_pred HHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHH
Q 007539 109 RTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIA 188 (599)
Q Consensus 109 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 188 (599)
+.++++++ ++++.+++++++.++..+..+..|+++++++|.......... . ..... . .+..++++.+.
T Consensus 5 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~-~--~~~~~--~--~~~~~~~~~~~ 72 (574)
T PRK11160 5 LPFLKLYK-----RHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGL-Y--SFNYM--L--PAAGVRGAAIG 72 (574)
T ss_pred HHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-h--hHHHH--h--HHHHHHHHHHH
Confidence 34556665 456667778888888888999999999999996532111000 0 00000 0 01111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 189 RTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (599)
Q Consensus 189 ~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (599)
..++.++..++.++++.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.++.++...+..++..++.++
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~ 149 (574)
T PRK11160 73 ---RTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVIL 149 (574)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566777888889999999999999999999999999999999999999999999988877665555555544433
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHH
Q 007539 269 MVSGILAYKFGAPFAWITSLSVVAYVV-FTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (599)
Q Consensus 269 ~~~~il~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (599)
+. .++++.++|.+++++++++++..+ +.....+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++
T Consensus 150 ~~-~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 228 (574)
T PRK11160 150 VL-TIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQ 228 (574)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHH
Confidence 32 234455677777665544443332 2233344445555666677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 007539 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQ-LSLPLNFLGSVYRETVQS 426 (599)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~-~~~pl~~l~~~~~~~~~~ 426 (599)
..+++.+...+..+..........++......+++++|++. .+|.+|+|.++++..+... ...|+..+...+..++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 307 (574)
T PRK11160 229 TEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQV 307 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877766666655555555555566677777 4899999999998877644 446888888999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHH
Q 007539 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL 505 (599)
Q Consensus 427 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL 505 (599)
..+++|+.++++.+++..+.....+ ....+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|
T Consensus 308 ~~s~~ri~~ll~~~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll 386 (574)
T PRK11160 308 IASARRINEITEQKPEVTFPTTSTA-AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386 (574)
T ss_pred HHHHHHHHHHHhCCCCCCCCcccCC-CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999987654322111111 1234579999999999864 5899999999999999999999999999999999
Q ss_pred hcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCcc
Q 007539 506 FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKY 585 (599)
Q Consensus 506 ~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~ 585 (599)
+|+|+|++|+|++||+|+++++.+++|++|+||||||+||++||+|||++++|+++||++++|++.+++++||++ |+||
T Consensus 387 ~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~Gl 465 (574)
T PRK11160 387 TRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGL 465 (574)
T ss_pred hcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccCcccCCCC
Q 007539 586 STVVGERGLKIEGK 599 (599)
Q Consensus 586 dT~vgE~G~~LSG~ 599 (599)
||.|||+|.+||||
T Consensus 466 dT~vge~g~~LSgG 479 (574)
T PRK11160 466 NAWLGEGGRQLSGG 479 (574)
T ss_pred CchhcCCCCCCCHH
Confidence 99999999999997
No 17
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2e-64 Score=559.12 Aligned_cols=459 Identities=21% Similarity=0.285 Sum_probs=359.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (599)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~ 204 (599)
+.+...+++.++.+++.+..|+++++++|.+........ .+... +..++...+ +..++.+++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~------~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~ 69 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLA------ELLPA----LGALALAVL---LRALLGWLGERAAA 69 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChH------HHHHH----HHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345566666677888888999999999997741111100 11111 111111111 22456778888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007539 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (599)
Q Consensus 205 ~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~ 284 (599)
+++.++..++|.++|+|++++|..+|+++++|++.+++++|.+.++..+...+..++..++..++ ..++++.++|.+++
T Consensus 70 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~ 148 (529)
T TIGR02857 70 RAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLA-ILAAVFPADWISGL 148 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999988888877655444444433332222 22333445666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (599)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (599)
++++.+++.+++.....++.++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..+++.+...+..+...
T Consensus 149 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (529)
T TIGR02857 149 ILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAF 228 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444444444444444555556677788899999999999999999999999999999998888777766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007539 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (599)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 444 (599)
.......++..+...++++++++.+.+|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 229 LSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 55555544444444444455667777999999999999999999999999999999999999999999999997543211
Q ss_pred CCCCCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 007539 445 DRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (599)
Q Consensus 445 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di 523 (599)
+ ....+ ....+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+
T Consensus 309 ~-~~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i 386 (529)
T TIGR02857 309 G-KAPVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL 386 (529)
T ss_pred C-CcCCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh
Confidence 1 11111 1123579999999999864 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 524 CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 524 ~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++++.+++|++|+||+|||++|++||+|||++++|+++|+++++|++.++++|||+++|+||||++||+|.+||||
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.4e-64 Score=563.69 Aligned_cols=473 Identities=26% Similarity=0.337 Sum_probs=375.3
Q ss_pred HHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHH
Q 007539 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (599)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (599)
++.++.++++++ ++++.++..+++.++..+...+.|++++.++|.+.... .. ..+..+. ..+++
T Consensus 10 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~------~~~~~~~----~~~~~ 73 (582)
T PRK11176 10 WQTFRRLWPTIA-----PFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKA-DR------SVLKWMP----LVVIG 73 (582)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch------hHHHHHH----HHHHH
Confidence 455566777775 34555666666666667777788999999999765211 10 0111110 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007539 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (599)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (599)
+.+ +..++.+++.++..+++.++..++|.++|+++.++|+.+|+++++|++.+++++|.+.+.......+..++..+
T Consensus 74 ~~l---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 74 LMI---LRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12345566777778889999999999999999999999999999999999999888888766555455555544
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHH
Q 007539 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (599)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (599)
+.+++.++ +++.++|.++++.++++++..++.....+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++
T Consensus 151 ~~~~~~~~-~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~ 229 (582)
T PRK11176 151 ASIIGLFI-MMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229 (582)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHH
Confidence 44433333 33445677666666655554455545555555556666677778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~ 424 (599)
|++..+++.+...+..+..........++..+....++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T PRK11176 230 FDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877766666666665555566666778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 425 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
++..+++|+.++++.+++..... ...++..+.|+++||+|+|++ ++++|+|+||+|+|||++||||+||||||||++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 99999999999987654322111 111222357999999999985 468999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCC-CCHHHHHHHHHHcCchHHHhcCc
Q 007539 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~-~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|+|+|+|++|+|++||+|+++++.+++|++|+|||||+++|+|||+|||++|+|+ ++||++++|++.++++++|++||
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999765 79999999999999999999999
Q ss_pred CccccccccCcccCCCC
Q 007539 583 AKYSTVVGERGLKIEGK 599 (599)
Q Consensus 583 ~G~dT~vgE~G~~LSG~ 599 (599)
+||||.+||+|.+||||
T Consensus 468 ~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 468 NGLDTVIGENGVLLSGG 484 (582)
T ss_pred cccCceeCCCCCcCCHH
Confidence 99999999999999997
No 19
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1e-64 Score=607.46 Aligned_cols=470 Identities=23% Similarity=0.302 Sum_probs=358.4
Q ss_pred HHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHH
Q 007539 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (599)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (599)
++.++++++ ++++.+++++++.++..++..+.|++++.++|.+..... +......+.+ +++++++
T Consensus 813 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~l------~~~~~~i 877 (1466)
T PTZ00265 813 LRIVYREIF-----SYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN----LEANSNKYSL------YILVIAI 877 (1466)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----HHHHHHHHHH------HHHHHHH
Confidence 445566665 345556667767777777888899999999997642110 0000111111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--cChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007539 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (599)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~--~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (599)
+..++.+++.++..+++.++..++|.++|+|++++|+.||++ +++|++.+++++|.+.++..+...+..++..++
T Consensus 878 ---~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~ 954 (1466)
T PTZ00265 878 ---AMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIV 954 (1466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223556788889999999999999999999999999999986 889999999999999888776655555555544
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhc
Q 007539 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTK-FRKA-----------------MNKADNDASTRAIDSLI 327 (599)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~e~l~ 327 (599)
.+++. +++++.++|.+++++++ +++++...+.+..+. ..++ .++..++....+.|.+.
T Consensus 955 ~~i~~-~~~~~~~~~~l~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~ 1030 (1466)
T PTZ00265 955 LFLVS-MVMSFYFCPIVAAVLTG---TYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFY 1030 (1466)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHh
Confidence 43322 23344455555444322 222222222221111 0111 11224456778999999
Q ss_pred cHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Q 007539 328 NYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLF 407 (599)
Q Consensus 328 ~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~ 407 (599)
|+++||+|+.|+++.++|.+..+.+.+...+.....+....+...+..+..++++++|++++..|.+|+|++++++.++.
T Consensus 1031 gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~ 1110 (1466)
T PTZ00265 1031 NMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFL 1110 (1466)
T ss_pred cHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999888777777666666655555555566677788899999999999999999876655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC-CCCC---CCCCCceEEEEEEEEeecC--CCcccccceeE
Q 007539 408 QLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMP---LNLKGGSIQFDNVHFSYLT--ERKILDGVSFV 481 (599)
Q Consensus 408 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~---~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~ 481 (599)
....++..+...+.+++++.++++|+.++++.+++.+... .... .+...+.|+|+||+|+||+ +.+||+|+||+
T Consensus 1111 ~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~ 1190 (1466)
T PTZ00265 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFS 1190 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEE
Confidence 5556778888999999999999999999998765332111 1111 1123468999999999984 45899999999
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--------------------------------------------------
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDT-------------------------------------------------- 511 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-------------------------------------------------- 511 (599)
|+||+++||||+||||||||++||+|||+|
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDS 1270 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999
Q ss_pred ----CCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCcccc
Q 007539 512 ----HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (599)
Q Consensus 512 ----~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT 587 (599)
++|+|++||+|+++++.++||++|+||||||+||+|||||||+||+|+++|||+++||+.|++||||.+||+||||
T Consensus 1271 ~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT 1350 (1466)
T PTZ00265 1271 TVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDT 1350 (1466)
T ss_pred ccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccCCCC
Q 007539 588 VVGERGLKIEGK 599 (599)
Q Consensus 588 ~vgE~G~~LSG~ 599 (599)
.|||+|.+||||
T Consensus 1351 ~VGe~G~~LSGG 1362 (1466)
T PTZ00265 1351 NVGPYGKSLSGG 1362 (1466)
T ss_pred ccCCCCCcCCHH
Confidence 999999999997
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.7e-63 Score=558.51 Aligned_cols=472 Identities=22% Similarity=0.301 Sum_probs=361.3
Q ss_pred HHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHH
Q 007539 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (599)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (599)
++.++.+.+|+. ++++.++..+++.++.+++.+..|++++.++|.+....... .. .++. ++.++++
T Consensus 8 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-------~~-~~~~-~~~~~~~ 73 (592)
T PRK10790 8 WPTLKRLLAYGS-----PWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-------LG-LVAG-LAAAYVG 73 (592)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-------hh-HHHH-HHHHHHH
Confidence 444555555553 44566666677777788888899999999999875321110 00 0000 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007539 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (599)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (599)
. ..+..++.+++.++..+++.++..++|.++|++++++|+.+|+++++|++.+++++|.+.++..+......++..+
T Consensus 74 ~---~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 74 L---QLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122456778888899999999999999999999999999999999999999999998888776655555555544
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHH
Q 007539 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (599)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (599)
+.++. .+++++.++|.++++.++++++.+++.....++.++..++..+..++..+.+.|.+.|+++||+|+.|+++.++
T Consensus 151 ~~~~~-~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 229 (592)
T PRK10790 151 ALIGA-MLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGER 229 (592)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHH
Confidence 33222 22334445666666555544444444444444444445555566667788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 345 YDEFLRRYEDAALKTQRSLAFL-NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRET 423 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~ 423 (599)
|.+..+++.+...+..+..... .....++..+...++++++++ +..|.+++|.++++..+...+..|+..+...+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~ 308 (592)
T PRK10790 230 MGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSML 308 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777766655544332 222222222222222233333 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 424 VQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 424 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
+++..+.+|+.++++.+++.... . ..+...++|+|+||+|+|++++++|+|+||+|+|||++||||+||||||||++
T Consensus 309 ~~~~~s~~ri~~~l~~~~~~~~~-~--~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~ 385 (592)
T PRK10790 309 QQAVVAGERVFELMDGPRQQYGN-D--DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLAS 385 (592)
T ss_pred HHHHHHHHHHHHHhcCCCccCCC-C--ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999999765432111 1 11222357999999999986678999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcC
Q 007539 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||+|||++++ +++|+++++|++.++++++|++||+
T Consensus 386 lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~ 464 (592)
T PRK10790 386 LLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPD 464 (592)
T ss_pred HHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999998 6999999999999999999999999
Q ss_pred ccccccccCcccCCCC
Q 007539 584 KYSTVVGERGLKIEGK 599 (599)
Q Consensus 584 G~dT~vgE~G~~LSG~ 599 (599)
||||.+||+|.+||||
T Consensus 465 Gldt~i~e~g~~LSGG 480 (592)
T PRK10790 465 GLYTPLGEQGNNLSVG 480 (592)
T ss_pred cccccccCCCCCCCHH
Confidence 9999999999999997
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.2e-63 Score=553.35 Aligned_cols=461 Identities=26% Similarity=0.389 Sum_probs=377.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 122 EFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTA 201 (599)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~ 201 (599)
++++.+++++++.++..++.+..|++++.++|....... . ..+..+ ...++++.+ +..++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~------~~~~~~----~~~~~~~~i---~~~~~~~~~~~ 76 (571)
T TIGR02203 11 PYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-R------SVLWWV----PLVVIGLAV---LRGICSFVSTY 76 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-h------hHHHHH----HHHHHHHHH---HHHHHHHHHHH
Confidence 446667777777788888888999999999996643211 1 011111 111111111 22456678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007539 202 VFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAP 281 (599)
Q Consensus 202 ~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 281 (599)
+..+.+.++...+|..+|+++++.|.+++++.++|++.++++.|.+.+...+...+..++..++.+++.+ ++++.++|+
T Consensus 77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~ 155 (571)
T TIGR02203 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLF-IVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHH
Confidence 9999999999999999999999999999999999999999998888887766555555554444433333 334456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 282 FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (599)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
++++.++.+++.+++.....++.++..++..+..++..+.+.|.++|+++||.++.|+++.++|++..+++.+...+..+
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666655655566666666666777778888999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007539 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (599)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 441 (599)
..........++..+...+++++|++.+.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77666666665555566667778888999999999999999999999999999999999999999999999999997655
Q ss_pred cccCCCCCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
+.+.... +.....++|+++||+|+|++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 316 ~~~~~~~--~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 316 EKDTGTR--AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCCCCCC--CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 4322111 11123357999999999975 46899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCC-CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~-~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+++++.+++|++|+||||||++|+|||||||+++++ +++|++++++++.+++++++.+||+||||+|||+|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999999999999999999999999999999987 89999999999999999999999999999999999999997
No 22
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.7e-62 Score=549.77 Aligned_cols=471 Identities=27% Similarity=0.350 Sum_probs=364.2
Q ss_pred HHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHH
Q 007539 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (599)
Q Consensus 106 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (599)
+.++++.++++ +++..+.+.+++.++..++.+..|++++.++|.+... . . .... +...+++
T Consensus 5 ~~~~~l~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~--~-----~~~~--~~~~~~~---- 65 (588)
T PRK13657 5 RLYARVLQYLG-----AEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK-G--D-----IFPL--LAAWAGF---- 65 (588)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c--c-----HHHH--HHHHHHH----
Confidence 34555666664 4456666677777778888899999999999976431 1 0 0000 0000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007539 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (599)
Q Consensus 186 ~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (599)
.+.. .+..++...+..+...++...++.++|+|++++|+.+|++.++|++.+++++|.+.+.......+...+..++
T Consensus 66 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~ 142 (588)
T PRK13657 66 GLFN---IIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLV 142 (588)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1223344445556666677778889999999999999999999999999988887776554444444443333
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHH
Q 007539 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (599)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~ 345 (599)
..+ +..++++.++|+++++++++++++.++...+.+..++..++..+..++..+.+.|.+.|+++||.|+.++.+.++|
T Consensus 143 ~~~-~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 221 (588)
T PRK13657 143 ALV-VLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQAL 221 (588)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHH
Confidence 222 2223334456666665555555544444444444455555566667788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (599)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 425 (599)
.+..+++.+...+..+..........++..+....++++|++.+.+|.+|+|+++++..++..+..|+..+...+..+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~ 301 (588)
T PRK13657 222 RDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFM 301 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777666655555555555555566667888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHH
Q 007539 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL 505 (599)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL 505 (599)
+..+++|+.++++.+++.+......+.+...+.|+++||+|+|++++++|+|+||+|+|||++||||+||||||||+|+|
T Consensus 302 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL 381 (588)
T PRK13657 302 AAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381 (588)
T ss_pred HHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999876543221111111112234799999999998656899999999999999999999999999999999
Q ss_pred hcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCcc
Q 007539 506 FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKY 585 (599)
Q Consensus 506 ~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~ 585 (599)
+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||++++|+++||++++|++.++++++|.++|+|+
T Consensus 382 ~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gl 461 (588)
T PRK13657 382 QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGY 461 (588)
T ss_pred hcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccCCCC
Q 007539 586 STVVGERGLKIEGK 599 (599)
Q Consensus 586 dT~vgE~G~~LSG~ 599 (599)
||.+||+|.+||||
T Consensus 462 dt~i~~~g~~LSgG 475 (588)
T PRK13657 462 DTVVGERGRQLSGG 475 (588)
T ss_pred cchhcCCCCCCCHH
Confidence 99999999999997
No 23
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.5e-62 Score=546.29 Aligned_cols=470 Identities=25% Similarity=0.351 Sum_probs=371.7
Q ss_pred HHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHH
Q 007539 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (599)
Q Consensus 107 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (599)
.++++++|++ ++++.++..+++.++..++.++.|++++.++|.+.... . . ...++. .+ +..
T Consensus 6 ~~~~l~~~l~-----~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~--~------~-~~~~~~----~~-~~~ 66 (585)
T TIGR01192 6 VYVRALSYLN-----VHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS--D------V-LPTLAL----WA-GFG 66 (585)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c------H-HHHHHH----HH-HHH
Confidence 3456667765 55777777788888888899999999999999764311 0 0 000000 00 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007539 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (599)
Q Consensus 187 i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (599)
+ +..+..+++..+..++..++..++|.++|+|++++|++||+++++|++.+++++|.+.+.......+..++..++.
T Consensus 67 ~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~ 143 (585)
T TIGR01192 67 V---FNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVA 143 (585)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1123445556666677777788888899999999999999999999999999999888876655555544444433
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHH
Q 007539 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (599)
Q Consensus 267 ~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~ 346 (599)
+++. +++++.++|.+++++++++++++++...+.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++++
T Consensus 144 ~~~~-~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~ 222 (585)
T TIGR01192 144 LFLL-IPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALK 222 (585)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHH
Confidence 3222 233445677777766666555555555555555555555566677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (599)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~ 426 (599)
+..+++.+...+..+..........++..+...+++++|++++.+|.+|+|+++++..++..+..|+..+...+.+++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~ 302 (585)
T TIGR01192 223 QFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEA 302 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777766665555555444444555566678889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 427 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
..+++|+.++++.+++..+.......+...+.|+++||+|+|++++++|+|+||+|++||++||||+||||||||+++|+
T Consensus 303 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 303 RAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred HHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 99999999998765432221111111122357999999999986668999999999999999999999999999999999
Q ss_pred cCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccc
Q 007539 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (599)
Q Consensus 507 gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~d 586 (599)
|+|+|++|+|++||+|+++++.+++|++++||||||++|++||+|||++++|+++++++++|++.+++++++.++|+|||
T Consensus 383 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~ 462 (585)
T TIGR01192 383 RVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD 462 (585)
T ss_pred cCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccCCCC
Q 007539 587 TVVGERGLKIEGK 599 (599)
Q Consensus 587 T~vgE~G~~LSG~ 599 (599)
|.+||+|.+||||
T Consensus 463 t~~~~~~~~LSgG 475 (585)
T TIGR01192 463 TLVGERGNRLSGG 475 (585)
T ss_pred chhcCCCCCCCHH
Confidence 9999999999997
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.1e-61 Score=543.03 Aligned_cols=472 Identities=26% Similarity=0.388 Sum_probs=369.2
Q ss_pred HHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHH
Q 007539 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (599)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (599)
++.++++++ ++++.+.+.+++.++..++.++.|++++.++|.+..... .. .+..++. +++++.+
T Consensus 6 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~------~~~~~~~----~~~~~~~ 69 (576)
T TIGR02204 6 LAALWPFVR-----PYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS-SG------LLNRYFA----FLLVVAL 69 (576)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc-HH------HHHHHHH----HHHHHHH
Confidence 455666665 345666667777778888899999999999997542211 10 1111111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007539 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (599)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (599)
+..+..+++.++..+++.++..++|..+|++++++|..+|++.++|++.+++++|.+.+..+....+..++..++.+
T Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 146 (576)
T TIGR02204 70 ---VLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMC 146 (576)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11244567778888999999999999999999999999999999999999999888888776554444444433332
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHH
Q 007539 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (599)
Q Consensus 268 ~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (599)
++ ..++++.++|++++++++.+++.+++.....+..++..++..+..++..+.+.|.++|+++||+++.|+++.++|++
T Consensus 147 ~~-~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~ 225 (576)
T TIGR02204 147 IG-GLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGG 225 (576)
T ss_pred HH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHH
Confidence 22 22334445666666665555544444444555555555566666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (599)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 427 (599)
..+++.+...+..+...........+.......++++|++.+.+|.+|+|+++++..+...+..|+..+...+.+++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~ 305 (576)
T TIGR02204 226 AVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAA 305 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887766665555444444333334445556678888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCC-CCCCCCceEEEEEEEEeecCC--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHH
Q 007539 428 VDMKSMFQLLEEKADIQDRDNAM-PLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (599)
Q Consensus 428 ~~~~ri~~~l~~~~~~~~~~~~~-~~~~~~~~I~f~nVsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~L 504 (599)
.+++|+.++++.+++.+...... ...+..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+|+
T Consensus 306 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlkl 385 (576)
T TIGR02204 306 GAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQL 385 (576)
T ss_pred HHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 99999999987654422111111 111123579999999999842 579999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCc
Q 007539 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (599)
Q Consensus 505 L~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G 584 (599)
|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++++|+.+|++++++++.++++++++++|+|
T Consensus 386 L~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~g 465 (576)
T TIGR02204 386 LLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465 (576)
T ss_pred HHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccCCCC
Q 007539 585 YSTVVGERGLKIEGK 599 (599)
Q Consensus 585 ~dT~vgE~G~~LSG~ 599 (599)
+||++||+|.+||||
T Consensus 466 l~t~i~~~g~~LSgG 480 (576)
T TIGR02204 466 YDTYLGERGVTLSGG 480 (576)
T ss_pred CCceeCCCCCcCCHH
Confidence 999999999999997
No 25
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-61 Score=506.75 Aligned_cols=405 Identities=22% Similarity=0.283 Sum_probs=349.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (599)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (599)
.++.+++..+..+.+.++..++|.++++|+.++++.+-.+.++|+..+++.+..+.++.++....+......+.-.+ +.
T Consensus 54 a~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~-i~ 132 (559)
T COG4988 54 AFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLL-IL 132 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 46677888888899999999999999999999999999999999999999999999888877776666555443222 22
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHH
Q 007539 273 ILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRY 352 (599)
Q Consensus 273 il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~ 352 (599)
+.++.++|.-++++++.++++.++++.+....++..++.-+.....++.+.|.++|+.|+|.|+..+...++..+..+++
T Consensus 133 i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~f 212 (559)
T COG4988 133 IAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDF 212 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 33445677778888888888888888777777776666667788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 353 EDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILS-GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMK 431 (599)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ 431 (599)
++..++.-+..-.......++.....+++.++.+..... |.+|....+.++.+...++.|+..++..|+..+++.++.+
T Consensus 213 R~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d 292 (559)
T COG4988 213 RKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAAD 292 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999887665556666666666666666655566666 8999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCCC-CCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 432 SMFQLLEEKADIQDRDNA-MPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 432 ri~~~l~~~~~~~~~~~~-~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
.+..+++.+.+..+.... ...+....+|+++|++|+|++++++++|+||+++||+++||||+||||||||+++|+|+++
T Consensus 293 ~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred HHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 999999887654332221 1222223356667999999988899999999999999999999999999999999999999
Q ss_pred CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccc
Q 007539 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (599)
Q Consensus 511 p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vg 590 (599)
|++|+|.+||+|+++++.++||+++++|+|+|+||+|||||||++++|+++||++++|++.+++.||++. |+|+||++|
T Consensus 373 ~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ig 451 (559)
T COG4988 373 PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIG 451 (559)
T ss_pred CCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCcccCCCC
Q 007539 591 ERGLKIEGK 599 (599)
Q Consensus 591 E~G~~LSG~ 599 (599)
|+|.+||||
T Consensus 452 e~G~~LSgG 460 (559)
T COG4988 452 EGGAGLSGG 460 (559)
T ss_pred cCCCCCCHH
Confidence 999999997
No 26
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-61 Score=539.37 Aligned_cols=450 Identities=21% Similarity=0.304 Sum_probs=353.8
Q ss_pred HHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 135 VAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVALRTIRSV 214 (599)
Q Consensus 135 ~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~~~~~~~~l 214 (599)
++..++.++.|++++.++|.+........ .+... +.++++..+ +..++.+++.++..+.+.++..++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~------~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 71 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTG------QILMW----IGTMVLIAV---VVYLLRYVWRVLLFGASYQLAVEL 71 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchh------HHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999997642111100 01110 011111111 223456677778888999999999
Q ss_pred HHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 007539 215 SRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV 294 (599)
Q Consensus 215 r~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~~~~~~~~~~~ 294 (599)
|.++|+|++++|+.+|+++++|++.+++++|.+.+.......+..++..++..++.++++.+.++|.++++++++++++.
T Consensus 72 r~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~ 151 (569)
T PRK10789 72 REDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMA 151 (569)
T ss_pred HHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887755444344444433222222222323456666666555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 295 VFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIF 374 (599)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (599)
++...+.+...+..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..+++.+...+..+..+..........
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (569)
T PRK10789 152 IMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAI 231 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555666677888999999999999999999999999999999888888777766665554444444
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 007539 375 SAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNL 454 (599)
Q Consensus 375 ~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~ 454 (599)
.....+++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++.++.+|+.++++.+++..... .+.+.
T Consensus 232 ~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~ 309 (569)
T PRK10789 232 GMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPE 309 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCC
Confidence 4445556667889999999999999999999999999999999999999999999999999998764422211 11112
Q ss_pred CCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhh
Q 007539 455 KGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (599)
Q Consensus 455 ~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~ 533 (599)
..+.|+++||+|+|++ ++++|+|+||+|+||+++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 310 ~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 310 GRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred CCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 2357999999999985 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred hceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 534 ~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+||||||++|++||+|||++++|+++++++++|++.+++++++.++|+||||.+||+|.+||||
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997
No 27
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-62 Score=553.34 Aligned_cols=405 Identities=28% Similarity=0.387 Sum_probs=344.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (599)
Q Consensus 194 ~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (599)
+..+++..++...+.|...++|.+.++.+++++.+|||.+.+|++..++++|.+.++..+..-+..++..+..+ +...+
T Consensus 86 ~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~f-i~g~i 164 (1228)
T KOG0055|consen 86 ISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATF-IAGFV 164 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45677888899999999999999999999999999999999999999999999888877665555555544333 23335
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007539 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (599)
Q Consensus 274 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~ 353 (599)
+.|...|.++++.+...+++++....+.+...+...+.+++.+++.+.+.|++.+++||.+|+.|+.+.++|.+.++.-.
T Consensus 165 i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 165 IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 56667888888888877777777766777677777777777888889999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSM 433 (599)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri 433 (599)
+...+...+.++......++.....+..+|+|+.++..+..+.|+++.+...+..-...+.+....+..+..+.+++.++
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 88877777666655555555566777888999899999999999887665444444445556666677788999999999
Q ss_pred HHHhcccccccCCC-CCCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 434 FQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 434 ~~~l~~~~~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
++.++..++.+... .........|.|||+||+|+||. +.++|+|+||+||+||++||||+|||||||+++||.|||+
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999887655432 12223334679999999999984 4589999999999999999999999999999999999999
Q ss_pred CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccc
Q 007539 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (599)
Q Consensus 511 p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vg 590 (599)
|++|+|++||.|+++++.++||++||+|.|||.||++||+|||+||+|++|++|+.+|||.|++||||.+||+||||.||
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCC
Q 007539 591 ERGLKIEGK 599 (599)
Q Consensus 591 E~G~~LSG~ 599 (599)
|+|.+||||
T Consensus 485 e~g~qLSGG 493 (1228)
T KOG0055|consen 485 ERGVQLSGG 493 (1228)
T ss_pred CCCCCCChH
Confidence 999999997
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.9e-60 Score=522.42 Aligned_cols=453 Identities=22% Similarity=0.267 Sum_probs=351.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~ 202 (599)
+++.++..+++.++..++.++.|++++.++|.+..... .. .+..+. ..+++.. .+..++.+++.++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~------~l~~~~----~~~~~~~---~~~~~~~~~~~~~ 69 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VP------TLLMLT----VLALGLY---LFLGLLDALRSFV 69 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hh------HHHHHH----HHHHHHH---HHHHHHHHHHHHH
Confidence 35566667777777888899999999999997753211 11 111111 0111111 1224567788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007539 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSS-MVFNVVPTILEISMVSGILAYKFGAP 281 (599)
Q Consensus 203 ~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~ 281 (599)
..+++.++..++|.++|+|++++|+.. .++...++.+|.+.++..+.. ....++..++.++ . .++++.++|.
T Consensus 70 ~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~ 142 (544)
T TIGR01842 70 LVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-Y-LLVCFLLHPW 142 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H-HHHHHHHhhH
Confidence 999999999999999999999999842 233445566677777655433 2333333322222 1 2334555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 282 FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (599)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (599)
+++++++.+++++++.....+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+
T Consensus 143 l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (544)
T TIGR01842 143 IGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASD 222 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554444444433344444555556667777888899999999999999999999999999999998888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007539 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (599)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 441 (599)
..+.......++..+...+++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++..+.+|+.++++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 302 (544)
T TIGR01842 223 RAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP 302 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 66555554444444455556678889999999999999999999999999999999999999999999999999997655
Q ss_pred cccCCCCCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
+..+. . +.+...+.|+++||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 303 ~~~~~-~--~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 379 (544)
T TIGR01842 303 SRDPA-M--PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG 379 (544)
T ss_pred cccCC-C--CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 42211 1 11122357999999999975 46899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+++++.+++|++++||||||++|++||+|||+++++++++++++++++.++++++++++|+||||.+||+|.+||||
T Consensus 380 ~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgG 458 (544)
T TIGR01842 380 ADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGG 458 (544)
T ss_pred EehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHH
Confidence 9999999999999999999999999999999999988889999999999999999999999999999999999999997
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.6e-60 Score=570.47 Aligned_cols=401 Identities=16% Similarity=0.214 Sum_probs=311.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (599)
Q Consensus 194 ~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (599)
++.+++.+++...+.+..+++|.++|++++++|+.||++.++|++.+|+++|.+.++..+...+..++..++.++..+++
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~ 1099 (1522)
T TIGR00957 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIV 1099 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778889999999999999999999999999999999999999999999887766655555555444333322
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007539 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (599)
Q Consensus 274 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~ 353 (599)
+ +..+|.+.++++.+++++.++...+.+..+..++...+..+...+.+.|+++|+++||+|+.|+++.+++.+..+...
T Consensus 1100 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1100 I-LLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2 223333222222211211111111212222223333345567788999999999999999999999999988887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL-SGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKS 432 (599)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 432 (599)
+..........+......++.. .++++++++.+. .|.+++|.+.+++.++..+..|+..+...+.+++.++++++|
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eR 1255 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVER 1255 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654444433444333332221 122233444443 588999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccC--CC-CCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 433 MFQLLEEKADIQD--RD-NAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 433 i~~~l~~~~~~~~--~~-~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+.++++.+++... .. ...+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+
T Consensus 1256 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1256 LKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999976654321 11 111223455789999999999754 5799999999999999999999999999999999999
Q ss_pred CCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccc
Q 007539 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (599)
Q Consensus 509 y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~ 588 (599)
|+|++|+|+|||+|+++++++++|++|++|||||+||+|||||||.+.+ +++|||+++|++.|+++|+|+++|+||||+
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 9999999999999999999999999999999999999999999999654 699999999999999999999999999999
Q ss_pred cccCcccCCCC
Q 007539 589 VGERGLKIEGK 599 (599)
Q Consensus 589 vgE~G~~LSG~ 599 (599)
|||+|.+||||
T Consensus 1415 v~e~G~~LSgG 1425 (1522)
T TIGR00957 1415 CAEGGENLSVG 1425 (1522)
T ss_pred ecCCCCcCCHH
Confidence 99999999997
No 30
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-59 Score=482.92 Aligned_cols=461 Identities=20% Similarity=0.290 Sum_probs=349.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (599)
|+.+.+++++.+...+..+..-++.+++|-.-... +. .. ..-+..+.+.+-++++.|....+.. ....
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia-g~-------~~-~f~~~~p~a~VR~~aI~Rt~~RY~E---Rlvs 82 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA-GL-------AY-IFNVMLPSAGVRGLAILRTAARYVE---RLVS 82 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc-cH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHhh
Confidence 44555555555555555555556667776532111 10 01 1112234566777888886655554 4466
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007539 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (599)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (599)
+.+..++..++|.++|+++...+..-..+..+||+.+|+..|++.+++++-..+...+..++.+.++ .+.+-.++++++
T Consensus 83 H~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~-~i~L~f~~~~~A 161 (573)
T COG4987 83 HDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVV-TIGLSFFSIPLA 161 (573)
T ss_pred hHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 7899999999999999999999999999999999999999999988877544443333332222222 122223466666
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 284 WITSLSVVAY-VVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (599)
Q Consensus 284 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (599)
+.+.+.+++. +++.....+..++..++..+.++...+.+.|.+.|..+.+.||+++.+.+.+.+..+.+.+...+.++.
T Consensus 162 lll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~ 241 (573)
T COG4987 162 LLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARF 241 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443332 233334445556667777778888889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccc
Q 007539 363 LAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLG-SVYRETVQSLVDMKSMFQLLEEKA 441 (599)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~-~~~~~~~~~~~~~~ri~~~l~~~~ 441 (599)
..+......++....++..+++.+..+-.|..+.-...++....+....++..+. ..+.+..+...+++|+.+++++++
T Consensus 242 ~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~ 321 (573)
T COG4987 242 TGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKP 321 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCc
Confidence 8877777666555554434444444455677664444444434445555555555 677889999999999999998877
Q ss_pred cccCCCCCCCCCCCCceEEEEEEEEeecCCC-cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 442 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
+...+.. ..+..+..++++||+|+|++.+ ++|+|+||++++||+|||+|+||||||||+++|+|.|+|++|+|.++|
T Consensus 322 e~~~~~~--~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 322 EVTFPDE--QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred ccCCCcc--ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 6543311 1111222799999999999655 899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.|++.++.+.+|+.|++++|.++||++|+|||+++++|++||||+|+|++++|+++++++.|+||+|.+||+|.+||||
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-58 Score=557.12 Aligned_cols=401 Identities=17% Similarity=0.224 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (599)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (599)
.++..++.+++...+.+...++|.++|++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.++..++
T Consensus 967 ~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1046 (1622)
T PLN03130 967 VLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV 1046 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999888776655566655554433333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHH
Q 007539 273 ILAYKFGAPFAWITSLSVVAYVVF-TLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (599)
Q Consensus 273 il~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~ 351 (599)
++.+ +.+ +.+++++++++++.. ...+.+..++..+...+..+...+.+.|+++|+++||+|+.++++.+++.+..+.
T Consensus 1047 ~i~~-~~~-~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~ 1124 (1622)
T PLN03130 1047 LIGI-VST-ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN 1124 (1622)
T ss_pred HHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 2222 222 222222221111111 1111111222222223344567788999999999999999998777666655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 352 YEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGE-MT-----VGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (599)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~-lt-----~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 425 (599)
..+..........+......++. ...+++.+.+.+..+. .+ .+.+..++++...+..++..+...+..++.
T Consensus 1125 ~~~~~~~~~~~~~wl~~~l~~~~---~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~ 1201 (1622)
T PLN03130 1125 NIRFTLVNMSSNRWLAIRLETLG---GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAEN 1201 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322211111111111111111 1111222333343321 11 233333444556667777777888888999
Q ss_pred HHHHHHHHHHHhcccccccCC---CCCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHH
Q 007539 426 SLVDMKSMFQLLEEKADIQDR---DNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTI 501 (599)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL 501 (599)
++.+++|+.++++.+++.+.. ..+.+.++..|.|+|+||+|+|+++ ++||+|+||+|+|||+|||||+||||||||
T Consensus 1202 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTL 1281 (1622)
T PLN03130 1202 SLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSM 1281 (1622)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999998776553211 1112223455789999999999754 579999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcC
Q 007539 502 LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 502 ~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~L 581 (599)
+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+|||||||.+++ +++|||+++||++|+++|||+++
T Consensus 1282 l~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130 1282 LNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred HHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999997 58999999999999999999999
Q ss_pred cCccccccccCcccCCCC
Q 007539 582 PAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 582 p~G~dT~vgE~G~~LSG~ 599 (599)
|+||||+|||+|.+||||
T Consensus 1361 p~GLdt~Vge~G~nLSgG 1378 (1622)
T PLN03130 1361 SLGLDAEVSEAGENFSVG 1378 (1622)
T ss_pred ccccCccccCCCCCCCHH
Confidence 999999999999999997
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=9.8e-58 Score=551.60 Aligned_cols=393 Identities=17% Similarity=0.235 Sum_probs=301.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007539 202 VFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAP 281 (599)
Q Consensus 202 ~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 281 (599)
.......+..+.+|.++|++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.++..+++ ++...|.
T Consensus 1021 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~-~~~~~p~ 1099 (1560)
T PTZ00243 1021 LSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV-TSASQPF 1099 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 334455566789999999999999999999999999999999999988887665555555554443333222 2222332
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 007539 282 FAWITSLSVVAYVVF---TLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALK 358 (599)
Q Consensus 282 l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 358 (599)
+ +++++++.+++ ...+.+..+..++......+...+.+.|++.|+++||+|+.|+++.++|.+..+...+...+
T Consensus 1100 ~---~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~ 1176 (1560)
T PTZ00243 1100 V---LVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYL 1176 (1560)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111111 11112222223333334556678899999999999999999999999999988888777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 359 TQRSLAFLNFGQNVIFSAALSTAMVLCSHGI--LSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQL 436 (599)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 436 (599)
......+......++..+....+.+++.+.. ..+.+++|.+.+++.+...+..|+..+...+.+++.++.+++|+.++
T Consensus 1177 ~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~ 1256 (1560)
T PTZ00243 1177 ENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYY 1256 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444445444444443333333333333332 34568999999999999999999999999999999999999999999
Q ss_pred hccccccc-C--------------------------CCCCC---CCCCCCceEEEEEEEEeecCC-CcccccceeEeeCC
Q 007539 437 LEEKADIQ-D--------------------------RDNAM---PLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAG 485 (599)
Q Consensus 437 l~~~~~~~-~--------------------------~~~~~---~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G 485 (599)
++..++.+ . ..... +.++..|.|+|+||+|+|+++ +++|+||||+|+||
T Consensus 1257 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G 1336 (1560)
T PTZ00243 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPR 1336 (1560)
T ss_pred HhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCC
Confidence 86432210 0 00000 112234689999999999865 46999999999999
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHH
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV 565 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei 565 (599)
|+|||||+||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||+||+|||||||++++ +++|+|+
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdeeI 1415 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAEV 1415 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 6999999
Q ss_pred HHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 566 ~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++||++|+++|+|.++|+||||.|||+|.+||||
T Consensus 1416 ~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgG 1449 (1560)
T PTZ00243 1416 WAALELVGLRERVASESEGIDSRVLEGGSNYSVG 1449 (1560)
T ss_pred HHHHHHCCChHHHhhCcccccccccCCcCcCCHH
Confidence 9999999999999999999999999999999997
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.8e-58 Score=547.80 Aligned_cols=469 Identities=20% Similarity=0.250 Sum_probs=369.0
Q ss_pred HHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHH
Q 007539 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (599)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (599)
+..+++|.- +.++..+++++++.++..++..+.|++++.++|.+... . . ...+.+ .++.+++
T Consensus 47 ~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-~-~------~~~~~~------~~~~~~i 108 (1466)
T PTZ00265 47 FFLPFKCLP----ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-E-N------VNDIIF------SLVLIGI 108 (1466)
T ss_pred HHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-h------HHHHHH------HHHHHHH
Confidence 444555553 45566677777777777788888899999999976321 0 0 001110 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007539 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (599)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (599)
+..++.+++.+++.+++.++..++|.++|+|++++|+.||+++.+|++.++++.|.+.++..+...+..++..++.+
T Consensus 109 ---~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~ 185 (1466)
T PTZ00265 109 ---FQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAF 185 (1466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356778889999999999999999999999999999999999999999999888887776655555555544433
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHH
Q 007539 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (599)
Q Consensus 268 ~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (599)
+...++++.++|.+++++++++++++++...+.+..++..+..++..++..+.+.|.+.|+++||+|+.|+.+.++|++
T Consensus 186 -i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~ 264 (1466)
T PTZ00265 186 -LGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNL 264 (1466)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHH
Confidence 2333455667888888777777766666666666665556666666678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSG--------EMTVGDLVMVNGLLFQLSLPLNFLGSV 419 (599)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g--------~lt~G~l~~~~~~~~~~~~pl~~l~~~ 419 (599)
..+.+.+...+.....++......++..+..++++++|++++.+| .+++|+++++.........++..+...
T Consensus 265 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~ 344 (1466)
T PTZ00265 265 SEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPN 344 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888887776666555555555566677778899998875 588999888765555445555666677
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCC--CcccccceeEeeCCCEEEEEcCCCCc
Q 007539 420 YRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSG 497 (599)
Q Consensus 420 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGSG 497 (599)
+..++.+.++++|+.++++.+++.++.......+ ..+.|+|+||+|+|++. .++|+|+||+|++||++|||||||||
T Consensus 345 ~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsG 423 (1466)
T PTZ00265 345 ITEYMKSLEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCG 423 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCC
Confidence 8889999999999999998776543211111111 12479999999999843 47999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEE-CCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCC------------------
Q 007539 498 KSTILRLLFRSFDTHSGSIRI-DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL------------------ 558 (599)
Q Consensus 498 KSTL~~LL~gly~p~~G~I~i-dG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~------------------ 558 (599)
||||+++|+|+|+|++|+|++ ||+|+++++.+++|++|+||+|||.||++||+|||++|.+
T Consensus 424 KSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~ 503 (1466)
T PTZ00265 424 KSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND 503 (1466)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccc
Confidence 999999999999999999999 6799999999999999999999999999999999999741
Q ss_pred ---------------------------------------CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 559 ---------------------------------------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 559 ---------------------------------------~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++|+++++||+.+++++||.+||+||||.||++|.+||||
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGG 583 (1466)
T PTZ00265 504 SQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGG 583 (1466)
T ss_pred ccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHH
Confidence 36789999999999999999999999999999999999997
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.2e-57 Score=546.72 Aligned_cols=400 Identities=16% Similarity=0.240 Sum_probs=292.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (599)
Q Consensus 194 ~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (599)
++..++.+++...+.+...++|.+++++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.++..+++
T Consensus 965 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1044 (1495)
T PLN03232 965 AVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFAL 1044 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999988877665555555544433322222
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHH
Q 007539 274 LAYKFGAPFAWITSLSVVAYVVFTLSVT-QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRY 352 (599)
Q Consensus 274 l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~ 352 (599)
+.+ +.+ +.+++++++++.+.+..... +..+..++...+..+...+.+.|+++|+++||+|+.++++.+++.+..+..
T Consensus 1045 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~ 1122 (1495)
T PLN03232 1045 IGT-VST-ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122 (1495)
T ss_pred HHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHH
Confidence 222 122 11111111111111111111 112223333344556677889999999999999999988777776655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 353 EDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL-SGEM----T-VGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (599)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~g~l----t-~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~ 426 (599)
.+..........+....... ....++++.+.+.+. .|.+ . .+.+..+..++..+..|+..+...+.+++.+
T Consensus 1123 ~~~~~~~~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~ 1199 (1495)
T PLN03232 1123 IRFTLANTSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENS 1199 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322211111111111111 111111222333333 2332 1 2233345667778888999999999999999
Q ss_pred HHHHHHHHHHhcccccccCC--C-CCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 427 LVDMKSMFQLLEEKADIQDR--D-NAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 427 ~~~~~ri~~~l~~~~~~~~~--~-~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
..+++|+.++++.+++.+.. . ...+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+
T Consensus 1200 ~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~ 1279 (1495)
T PLN03232 1200 LNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279 (1495)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999876553221 1 111223445789999999999654 6899999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCc
Q 007539 503 RLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 503 ~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
++|+|+|+|++|+|+|||+|+++++++++|++|+||||||+||+|||||||++++ +++|||+++|+++|+++|+|+++|
T Consensus 1280 ~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp 1358 (1495)
T PLN03232 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNP 1358 (1495)
T ss_pred HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999987 699999999999999999999999
Q ss_pred CccccccccCcccCCCC
Q 007539 583 AKYSTVVGERGLKIEGK 599 (599)
Q Consensus 583 ~G~dT~vgE~G~~LSG~ 599 (599)
+||||+|||+|.+||||
T Consensus 1359 ~GLdt~v~e~G~~LSgG 1375 (1495)
T PLN03232 1359 FGLDAEVSEGGENFSVG 1375 (1495)
T ss_pred CCCCceecCCCCCCCHH
Confidence 99999999999999997
No 35
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.5e-58 Score=526.21 Aligned_cols=400 Identities=21% Similarity=0.333 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (599)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (599)
.++..+|+.++...+.+..+.+++++++++++.|+.||+..++|.+.+|.+.|.+.++..+...+..++..++.++.+++
T Consensus 872 ~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~ 951 (1381)
T KOG0054|consen 872 SLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV 951 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999888888777666666666665544444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHH
Q 007539 273 ILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKF---RKAM-NKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEF 348 (599)
Q Consensus 273 il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~ 348 (599)
++.+. .|++ +++++++. ++.+.+.++..+. -+++ ...++...+++.|+++|+.|||+|+.|+++.+++...
T Consensus 952 vi~~~-~P~f---li~~~pl~-v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~ 1026 (1381)
T KOG0054|consen 952 VISYV-TPWF---LIAIIPLG-VIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDEL 1026 (1381)
T ss_pred HhhHH-hHHH---HHHHHHHH-HHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHH
Confidence 43332 2222 22222222 2222222222221 2222 2245567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 349 LRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (599)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 428 (599)
.+.+.+...-......|+.....++.......+.++.... ..+.++.|.+...++|..++..-++.+.+...++...++
T Consensus 1027 ~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~ 1105 (1381)
T KOG0054|consen 1027 IDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMV 1105 (1381)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9988877655444444444444544443333332222221 122277899999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccc--c-CCCCCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHH
Q 007539 429 DMKSMFQLLEEKADI--Q-DRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (599)
Q Consensus 429 ~~~ri~~~l~~~~~~--~-~~~~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~L 504 (599)
++||+.|+.+.++|. . +...+++.||..|+|+|+|++.+|.++ ++||+||||+|+|||||||||+||||||||++.
T Consensus 1106 SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~a 1185 (1381)
T KOG0054|consen 1106 SVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILA 1185 (1381)
T ss_pred hhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHH
Confidence 999999998865541 1 112245668889999999999999755 679999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCc
Q 007539 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (599)
Q Consensus 505 L~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G 584 (599)
|.|+.+|.+|+|.|||+||.++++++||++++++||||.||+||||.||...+ +.+|+|+|+|+++|+|.++|+++|+|
T Consensus 1186 LFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1186 LFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred HHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcC
Confidence 99999999999999999999999999999999999999999999999999887 59999999999999999999999999
Q ss_pred cccccccCcccCCCC
Q 007539 585 YSTVVGERGLKIEGK 599 (599)
Q Consensus 585 ~dT~vgE~G~~LSG~ 599 (599)
+|++|.|+|.|+|-|
T Consensus 1265 Ld~~v~egG~N~SvG 1279 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVG 1279 (1381)
T ss_pred CCceecCCCccCChH
Confidence 999999999999954
No 36
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1e-55 Score=490.51 Aligned_cols=455 Identities=14% Similarity=0.123 Sum_probs=335.7
Q ss_pred HHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHH
Q 007539 109 RTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIA 188 (599)
Q Consensus 109 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 188 (599)
+.++++++ .++|+.+++++++.++..+..+..|++++.++|..... . .. .+..+ +++.+
T Consensus 6 ~~l~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~-~~------~~~~~----~~~~~----- 64 (555)
T TIGR01194 6 GEILALLR----SPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-G-QG------SLFSF----GGLCL----- 64 (555)
T ss_pred HHHHHHHh----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c-ch------HHHHH----HHHHH-----
Confidence 34455543 13477777778888888888889999998888743110 0 00 00000 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 189 RTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (599)
Q Consensus 189 ~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (599)
+..++.+++.++..+.+.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.++.++.. ...++..++.++
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~ 141 (555)
T TIGR01194 65 --LALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFF 141 (555)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 11245566777888999999999999999999999999999999999999999999988877643 333333333322
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhH--HHHHHHH
Q 007539 269 MVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEA--FEAEQYD 346 (599)
Q Consensus 269 ~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~--~~~~~~~ 346 (599)
+..++++.++|.+++++++.+++.+++..+..+..++..++.++..++.++.+.|.+.|+++||+|+.++ ...++++
T Consensus 142 -~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~ 220 (555)
T TIGR01194 142 -FCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQ 220 (555)
T ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhh
Confidence 2223444556766666555444443433333333444445555667788899999999999999999954 5677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (599)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~ 426 (599)
+..+++.+...+..+..........++..+...+.++++++ .|.+|+|+++++..++..+..|+..+...+.+++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a 297 (555)
T TIGR01194 221 ESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQA 297 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777666554443332222222222222222223322 379999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccc--cc-C-CC-CCC---CCCCCCceEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCC
Q 007539 427 LVDMKSMFQLLEEKAD--IQ-D-RD-NAM---PLNLKGGSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTS 494 (599)
Q Consensus 427 ~~~~~ri~~~l~~~~~--~~-~-~~-~~~---~~~~~~~~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~S 494 (599)
.++++|+.++++.+++ .. + .. ... +.....+.|+|+||+|+|++. +++|+|+||+|++||++||||||
T Consensus 298 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~s 377 (555)
T TIGR01194 298 QIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGEN 377 (555)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCC
Confidence 9999999999753211 11 0 00 000 111123579999999999752 36999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCc
Q 007539 495 GSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAI 574 (599)
Q Consensus 495 GSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l 574 (599)
|||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||+||+++|++|+++|+ .|++++++++++++.+++
T Consensus 378 GsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l 454 (555)
T TIGR01194 378 GCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEI 454 (555)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999995 467899999999999999
Q ss_pred hHHHhcCcCccccccccCcccCCCC
Q 007539 575 HDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 575 ~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++++++|+||||. .+||||
T Consensus 455 ~~~~~~lp~g~~t~-----~~LSgG 474 (555)
T TIGR01194 455 ADKVKIEDGGFSTT-----TALSTG 474 (555)
T ss_pred chhhcccccccCCc-----ccCCHH
Confidence 99999999999995 789997
No 37
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.1e-55 Score=449.94 Aligned_cols=453 Identities=24% Similarity=0.298 Sum_probs=355.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (599)
+..++...++..+..++.+..|+++-++.|.+...... .+++.+....+. ...+..++..+|+.++
T Consensus 22 r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~-------~TLv~Ltvlal~-------ly~~~glLd~iR~~~l 87 (580)
T COG4618 22 RRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSV-------PTLVMLTVLALG-------LYAFQGLLDAIRSRVL 87 (580)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCc-------chHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34445555666667788889999999999998743221 222222111111 1223467899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007539 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSS-MVFNVVPTILEISMVSGILAYKFGAPF 282 (599)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (599)
.+++.++...+..++|....+.+..- +..|+=.+.+. |-+.+..+++. ....+++.-.. -+...++|.+++++
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~---~~~g~~~Q~Lr-DL~qvR~Fltg~g~~A~fDaPW~--P~yl~v~fl~Hp~l 161 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLR---RGSGDGLQPLR-DLDQVRQFLTGTGLTAFFDAPWM--PLYLAVIFLFHPWL 161 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhh---cCCCccccchh-hHHHHHHHHcCCCcchhcCCchH--HHHHHHHHHHHHHH
Confidence 99999999999999999998777643 33443223333 34455555443 11112111111 11223456667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 283 AWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (599)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (599)
.++.++.+++++.+.+.-.+..++..++..+...+.+.....+.+|.++|++.|......++|.+.+..+.+...+..-.
T Consensus 162 G~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 162 GLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 88777776666655555444444545555566667777888899999999999999999999999999988887666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007539 363 LAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (599)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 442 (599)
...+......+-....+.++.+|+|+++.|++|.|.+++-..++.+...|+......|.++..+..+.+|+.++++..+.
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 55555555556666777788899999999999999999999999999999999999999999999999999999987664
Q ss_pred ccCCCCCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 007539 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (599)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~ 521 (599)
..+ ..+.|.+.+.+.++++++.=|+ ++|+|+|+||+++||+-+|||||||||||||+++|.|.++|.+|.|++||-
T Consensus 322 ~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 322 AAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 322 2344445679999999997664 459999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 522 DICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 522 di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+++++.+.+-++|||.|||..||+|||+|||+=.++++++|.|.+|++.|+.||.|.+||+||||.|||+|..||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 999999999999999999999999999999997777789999999999999999999999999999999999999997
No 38
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.5e-54 Score=518.16 Aligned_cols=400 Identities=18% Similarity=0.282 Sum_probs=299.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (599)
Q Consensus 194 ~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (599)
.+..++.+++.+.+.+..++++.++++++++.|+.||++.++|++.+|+++|.+.++..+...+..++..++.++..+++
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~ 1019 (1490)
T TIGR01271 940 ALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV 1019 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888899999999999999999999999999999999999999999888877665555555544443333222
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007539 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (599)
Q Consensus 274 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~ 353 (599)
+ +.++|++.++++..+++++.+...+.+..+..++......+...+.+.|++.|+.+||+|++++.+.+++.+..+...
T Consensus 1020 i-~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1020 V-SVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2 223333322111111111111111222222233333445566788999999999999999999999999999888655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSM 433 (599)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri 433 (599)
+..........+......++.......+.++ .+....++.|.+..++.++..+..++..+...+.++..++.+++|+
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi 1175 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRV 1175 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333333332222211111111 1112234556666666677788889999999999999999999999
Q ss_pred HHHhcccccccCCC-----------------CCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCC
Q 007539 434 FQLLEEKADIQDRD-----------------NAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSG 495 (599)
Q Consensus 434 ~~~l~~~~~~~~~~-----------------~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SG 495 (599)
.++++.+++..... ..++.++..|.|+|+||+|+|++ .+++|+|+||+|+|||+|||||+||
T Consensus 1176 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSG 1255 (1490)
T TIGR01271 1176 FKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTG 1255 (1490)
T ss_pred HHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCC
Confidence 99987655422110 01112345578999999999985 4689999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCch
Q 007539 496 SGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (599)
Q Consensus 496 SGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~ 575 (599)
||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|+||||||+||+|||||||.+++ +++|+++|+|++.++++
T Consensus 1256 sGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~ 1333 (1490)
T TIGR01271 1256 SGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLK 1333 (1490)
T ss_pred CCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCH
Confidence 999999999999997 8999999999999999999999999999999999999999998875 58999999999999999
Q ss_pred HHHhcCcCccccccccCcccCCCC
Q 007539 576 DTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 576 d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++|.++|+||||+|||+|.+||||
T Consensus 1334 ~~i~~lp~GLdt~v~e~G~nLSgG 1357 (1490)
T TIGR01271 1334 SVIEQFPDKLDFVLVDGGYVLSNG 1357 (1490)
T ss_pred HHHHhCccccccccccCCCcCCHH
Confidence 999999999999999999999997
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.9e-53 Score=509.17 Aligned_cols=441 Identities=19% Similarity=0.248 Sum_probs=324.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~ 202 (599)
+++.++...++.++..++.++.|++++.++|.+.... .. ...+. + .+.++++. ++..++.....+.
T Consensus 299 ~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~--~~----~~~~~-~---~~~l~~~~----~~~~~~~~~~~~~ 364 (1495)
T PLN03232 299 LGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD--PA----WVGYV-Y---AFLIFFGV----TFGVLCESQYFQN 364 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc----chHHH-H---HHHHHHHH----HHHHHHHHHHHHH
Confidence 3455566666677788888999999999999774211 10 00000 0 01111111 1111222111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007539 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPF 282 (599)
Q Consensus 203 ~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (599)
..+++.++...++..+|+|+++++..++++.++|++.++++.|.+.++.+.. .+..++...+.+++.+.++ + ..+
T Consensus 365 ~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l-~---~~l 439 (1495)
T PLN03232 365 VGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLL-Y---QQL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-H---HHH
Confidence 3578888999999999999999999999999999999999999988877653 3334443333332222211 1 122
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007539 283 AWITSLS---VVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKT 359 (599)
Q Consensus 283 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 359 (599)
++..++. +++++++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322221 1222223334455556666666777788889999999999999999999999999998777766655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007539 360 QRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEE 439 (599)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 439 (599)
............. ......++.+|++.+..|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.
T Consensus 520 ~~~~~~~~~~~~~--~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNS--IPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4433332221111 11122334568888889999999999999999999999999999999999999999999999976
Q ss_pred cccccCCCCCCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 007539 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (599)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~ 517 (599)
+++...... +.....+.|+|+||+|+|++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|.+.
T Consensus 598 ~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~ 675 (1495)
T PLN03232 598 EERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV 675 (1495)
T ss_pred ccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence 653221111 11112247999999999974 46899999999999999999999999999999999999999999773
Q ss_pred ECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCC
Q 007539 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIE 597 (599)
Q Consensus 518 idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LS 597 (599)
++|++|+||+|+|+||+|||||||++|+| +++|+++++++.|+++++++.||+|+||+|||+|.+||
T Consensus 676 ------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS 742 (1495)
T PLN03232 676 ------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS 742 (1495)
T ss_pred ------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence 46789999999999999999999999985 79999999999999999999999999999999999999
Q ss_pred CC
Q 007539 598 GK 599 (599)
Q Consensus 598 G~ 599 (599)
||
T Consensus 743 GG 744 (1495)
T PLN03232 743 GG 744 (1495)
T ss_pred HH
Confidence 97
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-52 Score=504.12 Aligned_cols=442 Identities=21% Similarity=0.263 Sum_probs=320.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (599)
++.++..+++.++..++.++.|++++.++|.+..... . ...+... +.++++. +...+ ....+.+. .
T Consensus 300 ~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~--~----~~~~~~~----~~l~~~~-~~~~~-~~~~~~~~--~ 365 (1622)
T PLN03130 300 GGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP--A----WIGYIYA----FSIFVGV-VLGVL-CEAQYFQN--V 365 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c----hHHHHHH----HHHHHHH-HHHHH-HHHHHHHH--H
Confidence 4455666666777888889999999999997743210 0 0011100 0111111 11100 01112222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007539 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (599)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (599)
.+++.++...++..+|+|+++++..++++.++|++.++++.|.+.++.+... +..++...+.+++.+.++...+.+ .+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~-~~ 443 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGV-AS 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4788889999999999999999999999999999999999999988877543 334444433333222222221111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
++.++++++++++...+.+..++..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12122222333333444455555666666677788889999999999999999999999999886666554433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007539 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (599)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 443 (599)
......... ....+.++.++++.+..|.+|+|.++++++++..+..|+..++..+..+.++.++++|+.++++.++..
T Consensus 524 ~~~~~~~~~--~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 524 AFNSFILNS--IPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 222111111 111234445788888899999999999999999999999999999999999999999999999765432
Q ss_pred cCCCCCCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEECC
Q 007539 444 QDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDG 520 (599)
Q Consensus 444 ~~~~~~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~-G~I~idG 520 (599)
..... +.....+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.+
T Consensus 602 ~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-- 677 (1622)
T PLN03130 602 LLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-- 677 (1622)
T ss_pred cccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--
Confidence 11111 11112247999999999974 3689999999999999999999999999999999999999999 99974
Q ss_pred EeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|++|+||+|+|+||+|||||||++|+| .++|++++|++.|+++++|+.||+|+||+|||+|.+||||
T Consensus 678 -----------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 678 -----------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred -----------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 568999999999999999999999987 6899999999999999999999999999999999999997
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=7.6e-50 Score=443.41 Aligned_cols=440 Identities=14% Similarity=0.166 Sum_probs=306.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 122 EFRLRVITALGFLVAAKVLNVQ-VPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRT 200 (599)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~-~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~ 200 (599)
++++.++..+++.++..++.+. .|++.+.++|.+.. .. ..+. .+ +.+++.. .++..++.
T Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~---~~------~~~~-~~---~~~~~~~-------~~~~~~~~ 69 (547)
T PRK10522 10 QYRWPFISVMALSLASAALGIGLIAFINQRLIETADT---SL------LVLP-EF---LGLLLLL-------MAVTLGSQ 69 (547)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc------hHHH-HH---HHHHHHH-------HHHHHHHH
Confidence 3456666666666777777766 47788889986521 00 0010 00 0011111 12345667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007539 201 AVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGA 280 (599)
Q Consensus 201 ~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 280 (599)
++..+++.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.+...+.. +..++..++.+++ ..++++.++|
T Consensus 70 ~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~-~~~~l~~~~~ 147 (547)
T PRK10522 70 LALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLG-SAAYLAWLSP 147 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhH
Confidence 7778889999999999999999999999999999999999999888877665432 3333333333222 2234445677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhh---HHHHHHHHHHHHHHHHHHH
Q 007539 281 PFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE---AFEAEQYDEFLRRYEDAAL 357 (599)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~ 357 (599)
.+++++++.+++.+++...+.+..++..++..+..++..+.+.|.++|+++++ ++.+ +.+.+++++..+++.+...
T Consensus 148 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (547)
T PRK10522 148 KMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHII 226 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhH
Confidence 77766665555554444445555555556666777788899999999999996 4433 4567788887777776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007539 358 KTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLL 437 (599)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 437 (599)
+.............++......+.+++++. . +..+.+.+.++..+...+..|+..+...+.+++.+..+++|+.+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~ 303 (547)
T PRK10522 227 RADTFHLSAVNWSNIMMLGAIGLVFYMANS-L--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLA 303 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544333222221111111111111112211 1 2223444444444445567899999999999999999999999987
Q ss_pred cccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 007539 438 EEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (599)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~ 517 (599)
+.+++.+.. ...+.+ ..+.|+++||+|+|++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 304 ~~~~~~~~~-~~~~~~-~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 304 LAPYKAEFP-RPQAFP-DWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred ccccccccc-cccccC-cCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 544322111 111111 124799999999998666899999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCC
Q 007539 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIE 597 (599)
Q Consensus 518 idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LS 597 (599)
+||+|+++++.+++|++|+||+||+++|++||+|| + +++++++++++++.+++++++.. |+|. ++|.+||
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LS 451 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLS 451 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCC
Confidence 99999999999999999999999999999999999 3 46888999999999888877653 5553 2589999
Q ss_pred CC
Q 007539 598 GK 599 (599)
Q Consensus 598 G~ 599 (599)
||
T Consensus 452 gG 453 (547)
T PRK10522 452 KG 453 (547)
T ss_pred HH
Confidence 97
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.3e-49 Score=444.54 Aligned_cols=470 Identities=15% Similarity=0.109 Sum_probs=345.8
Q ss_pred HHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHH
Q 007539 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (599)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (599)
.+.+..+++|++.....+.+..++..++++++.+++.+..|++.+.++|.+..... ..+. ..+.. .++++++
T Consensus 76 ~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~--~~f~---~~l~~---~~l~~~~ 147 (659)
T TIGR00954 76 LGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP--RNFA---WILFK---WFLIAPP 147 (659)
T ss_pred HHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH--HHHH---HHHHH---HHHHHHH
Confidence 34456667777622111112355667777777888999999999999998763211 1010 00110 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007539 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (599)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (599)
.. ++..+..+++.++...+..++.++++.+.|+++...+..+|++ ++|++.+++++|++.+.......+..++..+
T Consensus 148 ~~---~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~ 223 (659)
T TIGR00954 148 AS---FINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPI 223 (659)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2234556667778888889999999999999999999999986 7899999999999888877766666666666
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHH
Q 007539 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (599)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (599)
+.++..++.+...++|.+.+++++.+++..++...+.+...+..++.++..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 224 ~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~ 303 (659)
T TIGR00954 224 LDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKET 303 (659)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 55543333333335555555554554555555555555566666677777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHH-h----cCCcCHHHHHH-HHHH---HHHHHHHH
Q 007539 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAA-LSTAMV-LCSHGI-L----SGEMTVGDLVM-VNGL---LFQLSLPL 413 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v-~----~g~lt~G~l~~-~~~~---~~~~~~pl 413 (599)
+++..+++.+...+..+..+....+..++.... ..+.++ .+...+ . .|.+|+|.+++ +..+ +..+..|+
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~ 383 (659)
T TIGR00954 304 VMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADAL 383 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888877777666655543321 222222 223222 2 27899998766 4444 56778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccCC--------C--CC-------------CCCCCCCceEEEEEEEEeecC
Q 007539 414 NFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR--------D--NA-------------MPLNLKGGSIQFDNVHFSYLT 470 (599)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--------~--~~-------------~~~~~~~~~I~f~nVsF~Y~~ 470 (599)
..+...+.+++++.++.+|+.++++.+++.... . .. .......+.|+++||+|+|++
T Consensus 384 ~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~ 463 (659)
T TIGR00954 384 GRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN 463 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC
Confidence 999999999999999999999999764432100 0 00 001112346999999999986
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHH
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIr 550 (599)
++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+|+ |++++||||+|++|++|++
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~ 532 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLR 532 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHH
Confidence 66899999999999999999999999999999999999999999999874 5689999999999999999
Q ss_pred HHhhcCC-------CCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 551 HNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 551 eNI~~g~-------~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|||.++. ++.++++++++++.+++++++++ |.||||..+ .+.+||||
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgG 586 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGG 586 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHH
Confidence 9999974 45678999999999999999988 999999987 46799997
No 43
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.6e-48 Score=442.80 Aligned_cols=445 Identities=20% Similarity=0.241 Sum_probs=329.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (599)
++.+++..++..+......+.|.+++.+++.+... ... . ....+++ +++.++..+..++..--.+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~--~~~-~-~~g~~~a---------~~lf~~~~l~~l~~~~~~~~~ 266 (1381)
T KOG0054|consen 200 GRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEK--RLP-L-NNGYLLA---------VLLFLASLLQSLLLHQYFFVS 266 (1381)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCC--Ccc-c-chhHHHH---------HHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555555888999999999987532 110 0 0011111 111111222233333334456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007539 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (599)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (599)
.+++.++...+...+|+|.+++....-..+.+|++.+.++.|.+.+...... ...++...+.+++.+.++...+++ -+
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~-sa 344 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGP-SA 344 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCh-HH
Confidence 6889999999999999999999998888889999999999999988776543 344555555554444444333333 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
+..++++++++++..++.+..++.+++..+..++......|.++||++||.|+||+.+.++.++..++..+.-.|.....
T Consensus 345 ~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~ 424 (1381)
T KOG0054|consen 345 LAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLS 424 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777787888888777888888889999999999999999999998888875554444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007539 364 AFLNFGQNVIFSAALSTAMVLCSHG-ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (599)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 442 (599)
+....... ..-.++.++.++.+. ...+.+|....++.++++..+..|+..++.....+.++.++++|+.+++..++.
T Consensus 425 ~~~~~~~~--~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~ 502 (1381)
T KOG0054|consen 425 ALNSFLNF--FSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL 502 (1381)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 22221111 111222233344444 456788888999999999999999999999999999999999999999976643
Q ss_pred ccCCCCCCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
..+.....+.......|+++|.+|++++ .++.|+||||+|++|+.+||||+.|||||+|+..|+|..+..+|+|.++|
T Consensus 503 ~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g 582 (1381)
T KOG0054|consen 503 DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG 582 (1381)
T ss_pred CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence 2221111122223347999999999974 34699999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.++||||+||||+|||||||.||.| .+++.-.++++.|+|+++++.||.|..|+|||+|.|||||
T Consensus 583 -------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGG 647 (1381)
T KOG0054|consen 583 -------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGG 647 (1381)
T ss_pred -------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHh
Confidence 4999999999999999999999986 8889999999999999999999999999999999999998
No 44
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.9e-47 Score=461.86 Aligned_cols=454 Identities=17% Similarity=0.234 Sum_probs=326.5
Q ss_pred HHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHH
Q 007539 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (599)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (599)
+..++.+++.+ ++.++..+++.++..++.++.|++++.++|.+....... ...+. +. +++++.
T Consensus 305 ~sl~~~l~~~~--------~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~-----~~g~~-~~---~~~~~~ 367 (1522)
T TIGR00957 305 PSLFKVLYKTF--------GPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPD-----WQGYF-YT---GLLFVC 367 (1522)
T ss_pred ccHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-----chHHH-HH---HHHHHH
Confidence 34555555544 445556666677788889999999999999874321100 00010 00 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007539 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (599)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (599)
.+ +..++.....+...+++.++...++..+|+|+++++..++++.++|++.++++.|++.+..+.. .+..++...
T Consensus 368 -~~---~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~ 442 (1522)
T TIGR00957 368 -AC---LQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAP 442 (1522)
T ss_pred -HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH
Confidence 11 1122233334456678999999999999999999999999999999999999999888766543 234444444
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHH
Q 007539 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (599)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (599)
+.+++.+.++....++ .++..++++++++++...+.+..++.+++..+..++..+.+.|.++|+++||.+++|+.+.++
T Consensus 443 ~~i~~~~~ll~~~~g~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~ 521 (1522)
T TIGR00957 443 LQVILALYFLWLNLGP-SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDK 521 (1522)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4433333222222221 222223333344445555556666667777777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSA--ALSTAMVLCSHGIL--SGEMTVGDLVMVNGLLFQLSLPLNFLGSVY 420 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~--~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~ 420 (599)
+++..++..+...+...... ...+.... ....++.++.+.+. .+.++.+.+++.++++..+..|+..++..+
T Consensus 522 i~~~r~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~ 597 (1522)
T TIGR00957 522 VEGIRQEELKVLKKSAYLHA----VGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVI 597 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877665544333332222 22111111 11222234556555 357899999998888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCCCCCC-CCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcH
Q 007539 421 RETVQSLVDMKSMFQLLEEKADIQDRDNAMPLN-LKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGK 498 (599)
Q Consensus 421 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGK 498 (599)
..+.++.++++|+.++++.+++........... ...+.|+++|++|+|++ ++++|+|+||+|++|++++|||+|||||
T Consensus 598 ~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGK 677 (1522)
T TIGR00957 598 SSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGK 677 (1522)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCH
Confidence 999999999999999997654321110001111 11237999999999975 4689999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHH
Q 007539 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578 (599)
Q Consensus 499 STL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I 578 (599)
|||+++|+|+++|++|+|.+|| +|+||||+|++|++||+|||.+|.+ .++++..++++.|++.+++
T Consensus 678 STLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l 743 (1522)
T TIGR00957 678 SSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDL 743 (1522)
T ss_pred HHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999998 5999999999999999999999975 6778888999999999999
Q ss_pred hcCcCccccccccCcccCCCC
Q 007539 579 MNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 579 ~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
..+|+|+||.+||+|.+||||
T Consensus 744 ~~~~~g~~t~ig~~g~~LSGG 764 (1522)
T TIGR00957 744 EILPSGDRTEIGEKGVNLSGG 764 (1522)
T ss_pred HhcCCCCCceecCCCCCCCHH
Confidence 999999999999999999997
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.1e-44 Score=438.03 Aligned_cols=440 Identities=15% Similarity=0.177 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~ 203 (599)
++.++...++.++..++.++.|++++.+++.+..... .. . .....+. +++++ +.++..++.....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~---~-~~~~~l~---~~~~~----~~~~~~l~~~~~~~~~ 146 (1490)
T TIGR01271 79 FWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNA-PE---R-EIAYYLA---LGLCL----LFIVRTLLLHPAIFGL 146 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-Cc---h-hHHHHHH---HHHHH----HHHHHHHHHHHHHHHH
Confidence 4455555555667778889999999999998731111 00 0 0001110 11111 1112223344445566
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007539 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (599)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (599)
.+.+.++...+...+|+|+++++...+++.++|++.++++.|++.+....... ..++...+.+++.++++...++ +.+
T Consensus 147 ~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G-~~~ 224 (1490)
T TIGR01271 147 HHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLE-VNG 224 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 67888889999999999999999999999999999999999998887765433 3343444444333333333333 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
++.++++++++++...+.+...+.+++..+..++..+.+.|.++||++||.+++|+.+.+++.+..++..+...+.....
T Consensus 225 l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~ 304 (1490)
T TIGR01271 225 FCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR 304 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666777777777788888899999999999999999999999888886665544444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007539 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPL-NFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (599)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl-~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 442 (599)
....... ......+.++.++.|.+..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.++|+.++.
T Consensus 305 ~~~~~~~--~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~ 381 (1490)
T TIGR01271 305 YFYSSAF--FFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY 381 (1490)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 2211111 11222333444566666544 78999999999988888887 47999999999999999999999976543
Q ss_pred ccCCCCCCCCCCCCceEEEEEEEEeecC---------------------------------CCcccccceeEeeCCCEEE
Q 007539 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT---------------------------------ERKILDGVSFVVPAGKSVA 489 (599)
Q Consensus 443 ~~~~~~~~~~~~~~~~I~f~nVsF~Y~~---------------------------------~~~vL~~isl~I~~G~~va 489 (599)
.... . . .....|+++|++|.|+. .+++|+|+||+|++|+.++
T Consensus 382 ~~~~-~--~--~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~ 456 (1490)
T TIGR01271 382 KTLE-Y--N--LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLA 456 (1490)
T ss_pred cccc-c--c--CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEE
Confidence 2111 0 0 11236999999999952 1368999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHH
Q 007539 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569 (599)
Q Consensus 490 IVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~ 569 (599)
|+||+|||||||+++|+|+++|++|+|.+|| .|+||+|+|++|++||+|||.+|.+ .++++..+++
T Consensus 457 I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~ 522 (1490)
T TIGR01271 457 VAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVI 522 (1490)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHH
Confidence 9999999999999999999999999999998 4999999999999999999999964 5667777888
Q ss_pred HHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 570 RRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 570 ~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+.+++++++..+|+|++|.|||+|.+||||
T Consensus 523 ~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 523 KACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred HHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 888999999999999999999999999997
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.8e-43 Score=424.09 Aligned_cols=456 Identities=20% Similarity=0.268 Sum_probs=329.1
Q ss_pred HHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHH
Q 007539 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (599)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (599)
..+++.+++.+ ++.++..+++.++..++.++.|++++.+++.+... +.. . ...+.+ +++
T Consensus 232 ~~l~~~l~~~~--------~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~--~~~-~---~~g~~l-------~~~ 290 (1560)
T PTZ00243 232 LSLLRTLFAAL--------PYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD--NAT-W---GRGLGL-------VLT 290 (1560)
T ss_pred cHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccc-h---hHHHHH-------HHH
Confidence 45555555444 45556677777788899999999999999876321 110 0 001111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--ccChhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007539 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHL--SRETGALNRIIDRGSRAINFILSSMVFNVVP 262 (599)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~--~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~ 262 (599)
+.+..++..++.....+...+.+.++...+...+|+|.++++...+. +.++|++.++++.|++.+..+... ...++.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~ 369 (1560)
T PTZ00243 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWS 369 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHH
Confidence 11122233455555667778899999999999999999999987776 568899999999999988877644 334455
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHH
Q 007539 263 TILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEA 342 (599)
Q Consensus 263 ~~~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~ 342 (599)
..+.+++.++++...++| .+++.++++++++++...+.+...+.+++..+..++..+...|.++||++||.+++|+.+.
T Consensus 370 ~Pl~li~~~~lL~~~lG~-~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~ 448 (1560)
T PTZ00243 370 SPMVLLLSILLLSRLVGW-CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFV 448 (1560)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333333332 3333333444444455555666666677777778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 343 EQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRE 422 (599)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~ 422 (599)
+++.+..++..+...+..........+... ...+..++.++.|.+..+.+|++.+++++.++..+..|+..++..+..
T Consensus 449 ~ri~~~R~~El~~l~~~~~~~~~~~~~~~~--~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~ 526 (1560)
T PTZ00243 449 ANIEDKRARELRYLRDVQLARVATSFVNNA--TPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTT 526 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986665555544433333222222111 112223334567777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccc-------cCC-----------C------CC-----CC----------------------
Q 007539 423 TVQSLVDMKSMFQLLEEKADI-------QDR-----------D------NA-----MP---------------------- 451 (599)
Q Consensus 423 ~~~~~~~~~ri~~~l~~~~~~-------~~~-----------~------~~-----~~---------------------- 451 (599)
+.++.++++||.++|+.++.. .+. . +. .+
T Consensus 527 ~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1560)
T PTZ00243 527 VLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLC 606 (1560)
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence 999999999999999754310 000 0 00 00
Q ss_pred -------CCCCCceEEEEEEEEeec---------------------------------------CCCcccccceeEeeCC
Q 007539 452 -------LNLKGGSIQFDNVHFSYL---------------------------------------TERKILDGVSFVVPAG 485 (599)
Q Consensus 452 -------~~~~~~~I~f~nVsF~Y~---------------------------------------~~~~vL~~isl~I~~G 485 (599)
.+...+.+.++|++|+++ +++++|+|+||+|++|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G 686 (1560)
T PTZ00243 607 CEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRG 686 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCC
Confidence 000113577888888643 1245899999999999
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHH
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV 565 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei 565 (599)
++++|+|+||||||||+++|+|+++|++|+|.++ ++|+||||+|++|++||+|||.++.+ .+++++
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~ 752 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARL 752 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHH
Confidence 9999999999999999999999999999999863 47999999999999999999999875 456678
Q ss_pred HHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 566 ~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.++++.++++++++.+|+|++|.+||+|.+||||
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGG 786 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGG 786 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHH
Confidence 8899999999999999999999999999999997
No 47
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-30 Score=259.11 Aligned_cols=364 Identities=16% Similarity=0.171 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007539 199 RTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKF 278 (599)
Q Consensus 199 r~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 278 (599)
........++....++|.++.++++..|+.-+++-.++.+...++.|.+.+..-... ++......+-.+..++.+ .++
T Consensus 68 s~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~-lp~~~qa~il~l~s~aYL-ayL 145 (546)
T COG4615 68 SQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSR-LPELVQAIILTLGSAAYL-AYL 145 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhh-hHHHHHHHHHHHHHHHHH-HHh
Confidence 344556788899999999999999999999999999999988888888877633222 233333222111122222 334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHH--HHHHHHHHHHHHHHHH
Q 007539 279 GAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF--EAEQYDEFLRRYEDAA 356 (599)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~--~~~~~~~~~~~~~~~~ 356 (599)
++.+..++.+.+++.++..........+.....++...+..+..+..+.|.++.+...--.+ ..+.|....+.+++..
T Consensus 146 Sp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~ 225 (546)
T COG4615 146 SPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHI 225 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhh
Confidence 55544444433333322222222223333444556667788888889999999987653322 2333333333333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQL 436 (599)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 436 (599)
............+.++++......++++.. .-+.-+.....++...+..+..|+.+....+..+.++.++++++.++
T Consensus 226 ~~~n~f~~la~~~~ni~l~~lIGlvf~lal---~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakl 302 (546)
T COG4615 226 IRANTFHLLAVNWSNIMLLGLIGLVFWLAL---SLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL 302 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 111111000111112222222222222211 11222333333444555677889999999999999999999999987
Q ss_pred hcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 007539 437 LEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (599)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I 516 (599)
-..|+. .+-..+.+.+. -..||++||.|+|++...-+..||++|++||.|-|+|.+||||||+++||.|+|.|++|+|
T Consensus 303 e~~~~~-a~~~~~q~~p~-~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 303 ELAPYK-ADFPRPQAFPD-WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred hcCCcc-ccCCCCCcCCc-ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence 543322 11111111111 2479999999999876667888999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCC-CCHHHHHHHHHHcCch
Q 007539 517 RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIH 575 (599)
Q Consensus 517 ~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~-~sdeei~~A~~~a~l~ 575 (599)
++||.+++.-+++++|+-++-|+-|-+||+.++ |.+. ++.+.+.+-++...+.
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~ 434 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELA 434 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999764 3333 6777776666655443
No 48
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=3.5e-27 Score=253.16 Aligned_cols=376 Identities=16% Similarity=0.198 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChh------hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 196 NELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETG------ALNRIIDRGSRAINFILSSMVFNVVPTILEISM 269 (599)
Q Consensus 196 ~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G------~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (599)
...+.++...+..+...-+...+.++.++..- ||.-...| ..-+|+++|.+..-.....+...++..+++++.
T Consensus 103 ~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~-~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islis 181 (604)
T COG4178 103 NVAQTWLNQMLRLRWREWLTKDLLDRWLDPRR-YYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLIS 181 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33466666677777778888888888888774 44333332 123566665554433333344455555554444
Q ss_pred HHHHHHHHhh----------hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh
Q 007539 270 VSGILAYKFG----------APFAWITSLSVVAYVVFTL----SVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYF 335 (599)
Q Consensus 270 ~~~il~~~~~----------~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~ 335 (599)
..+++.-..+ ..+.-.++.++++|+++.. ++.+...+..-+..+..+.....+.-.-.+.+.|-.+
T Consensus 182 F~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly 261 (604)
T COG4178 182 FTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALY 261 (604)
T ss_pred HHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 4333330000 0011111122233333322 2223222333333334445555667777889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Q 007539 336 NNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNF 415 (599)
Q Consensus 336 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~ 415 (599)
+.|+.+.++.+.......+...+.......+..+......+...+..++++-....|+++.|.++.....+.++...++.
T Consensus 262 ~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslsw 341 (604)
T COG4178 262 RGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSW 341 (604)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887766666555444433333333333222222223333445556678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc------cccCCCCCCCC--CCCCceEEEEEEEEeecCCCcccccceeEeeCCCE
Q 007539 416 LGSVYRETVQSLVDMKSMFQLLEEKA------DIQDRDNAMPL--NLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKS 487 (599)
Q Consensus 416 l~~~~~~~~~~~~~~~ri~~~l~~~~------~~~~~~~~~~~--~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~ 487 (599)
+...+..+..-.+.+.|+.++.+.-+ +.......... ......|+|+|++..-|++.+.|+++||++++|+.
T Consensus 342 fi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~ 421 (604)
T COG4178 342 FIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGER 421 (604)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCE
Confidence 99999999999999999988853221 11111000000 10135899999999998888999999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCC--CCHHHH
Q 007539 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--ATEEEV 565 (599)
Q Consensus 488 vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~--~sdeei 565 (599)
+-|.|+||||||||++.|+|+++--+|+|-+-. -+.+-|+||.|++=.||+||=|+|-++. .+|+|+
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 999999999999999999999999999986541 1248899999999999999999998754 899999
Q ss_pred HHHHHHcCchHHHhcCcC
Q 007539 566 YDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 566 ~~A~~~a~l~d~I~~Lp~ 583 (599)
.+++.+++|.+++++|.+
T Consensus 491 ~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 491 VAVLHKVGLGDLAERLDE 508 (604)
T ss_pred HHHHHHcCcHHHHHHHhc
Confidence 999999999999999754
No 49
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=4e-31 Score=266.46 Aligned_cols=141 Identities=28% Similarity=0.540 Sum_probs=132.7
Q ss_pred ceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
|.|+|+||+|+|++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++||+++..++..++|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 46999999999974 4579999999999999999999999999999999999997 799999999999999999999999
Q ss_pred eeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||||++.+|++|++||+.+..+ .++++++++++.+++++++.++|+||||.++|+|.+||||
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 99999999999999999975443 6789999999999999999999999999999999999997
No 50
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.5e-28 Score=250.56 Aligned_cols=140 Identities=26% Similarity=0.428 Sum_probs=117.9
Q ss_pred CCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCC--
Q 007539 453 NLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDIC-- 524 (599)
Q Consensus 453 ~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~-- 524 (599)
++..+.|+|+||+|+|++ .+++|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 344568999999999974 4579999999999999999999999999999999999997 57999999999997
Q ss_pred CCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCC--CCCHHHH-----HHHHHHcCchHHHhcCcCccccccccCcccCC
Q 007539 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEEEV-----YDAARRAAIHDTIMNFPAKYSTVVGERGLKIE 597 (599)
Q Consensus 525 ~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~sdeei-----~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LS 597 (599)
+++...+|+.++||||+|++|++||+|||.++.+ ..++++. .++++.+++ ++++++.++++|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCC
Confidence 4556788999999999999999999999997632 2444443 445566654 4456788999999999
Q ss_pred CC
Q 007539 598 GK 599 (599)
Q Consensus 598 G~ 599 (599)
||
T Consensus 228 gG 229 (329)
T PRK14257 228 GG 229 (329)
T ss_pred HH
Confidence 97
No 51
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=1.1e-27 Score=235.42 Aligned_cols=142 Identities=39% Similarity=0.619 Sum_probs=133.1
Q ss_pred ceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
+.|+++|++++|++ ++++|+|+||+|++|+.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 36899999999975 35799999999999999999999999999999999999999999999999999999988999999
Q ss_pred eeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|++|++.+|++|++|||.+.++ .+++++.++++..++.+++.++|.|++|.+++...+||||
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G 143 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG 143 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence 99999999999999999987653 5678899999999999999999999999999999999986
No 52
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.3e-27 Score=236.13 Aligned_cols=143 Identities=48% Similarity=0.808 Sum_probs=133.6
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
++|+++|++++|++.+++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 ~~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred CeEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 36899999999975557999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|++|++.+|++|++||+.++.+...++++.++++..++.++++.+|.|+++.++.....||||
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 143 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQG 143 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHH
Confidence 999999999999999999987666677888899999999999999999999999999999986
No 53
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.95 E-value=2.6e-27 Score=235.31 Aligned_cols=141 Identities=40% Similarity=0.642 Sum_probs=130.9
Q ss_pred EEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 459 IQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
|+++||+++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 578999999974 4579999999999999999999999999999999999999999999999999988888889999999
Q ss_pred eCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++|++.+|+.|++|||.++.+..+.+++.++++..+++++++.+|.|+++.......+||||
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG 142 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGG 142 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHH
Confidence 99999999999999999876555677788888889999999999999999999999999997
No 54
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.1e-27 Score=234.59 Aligned_cols=141 Identities=70% Similarity=1.041 Sum_probs=132.5
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|++++++|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 57899999997556799999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|++.+|++|++||+.++.++.+++++.++++.+++.+.+..+|.|++|.+..+..+||||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G 141 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGG 141 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHH
Confidence 9999999999999999987666778888889999999999999999999999999999986
No 55
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=4.7e-27 Score=236.09 Aligned_cols=144 Identities=29% Similarity=0.518 Sum_probs=132.8
Q ss_pred CCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhh
Q 007539 455 KGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (599)
Q Consensus 455 ~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~ 533 (599)
..+.|+++|++++|++. .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 34689999999999753 57999999999999999999999999999999999999999999999999999999889999
Q ss_pred hceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 534 ~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.|+||+|++.+|++|++||+.+... ..+++++++++.+++++++..+|.|++|.+++.+.+||||
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G 160 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVG 160 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHH
Confidence 9999999999999999999976532 3567788899999999999999999999999999999986
No 56
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.94 E-value=1.6e-26 Score=227.07 Aligned_cols=142 Identities=42% Similarity=0.645 Sum_probs=131.3
Q ss_pred eEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
+|+++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 68999999999743 57999999999999999999999999999999999999999999999999998888878888999
Q ss_pred eeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|++|++.+|..|++||+.++.+..+++++.++++..++.+.+..+|.|++|.+.+....||||
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG 144 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGG 144 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHH
Confidence 999999999999999999876555667788899999999999999999999999999999997
No 57
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6e-27 Score=216.59 Aligned_cols=134 Identities=30% Similarity=0.529 Sum_probs=120.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-----ceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-----GSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~-----G~I~idG~di~~--~~~~~ 530 (599)
.++++|+++-|. ++.+|+|||++|++++.+|++|||||||||+++.+-|+.+..+ |+|.+||+||.+ ++.-+
T Consensus 7 ~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 689999999996 6789999999999999999999999999999999999999987 999999999977 57889
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCC------CCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~------~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|++||+|+|.|.-|..||+||++||- +..-||-+++++++|+|+|-+.+ .+.+.+..||||
T Consensus 86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGG 153 (253)
T COG1117 86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGG 153 (253)
T ss_pred HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChh
Confidence 999999999999999999999999993 11235668999999999998875 356678889997
No 58
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.6e-26 Score=229.16 Aligned_cols=141 Identities=52% Similarity=0.846 Sum_probs=130.9
Q ss_pred EEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
|+++|++++|++. .++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999743 379999999999999999999999999999999999999999999999999988888888999999
Q ss_pred eCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++|++.+|+.|++||+.++.++.+.+++.++++..+++++++.+|.|+++.++.....||||
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G 142 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGG 142 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHH
Confidence 99999999999999999987666677788888888999999999999999999999999997
No 59
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.94 E-value=1.7e-26 Score=227.82 Aligned_cols=144 Identities=37% Similarity=0.603 Sum_probs=130.8
Q ss_pred CceEEEEEEEEeecCC--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhh
Q 007539 456 GGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~ 533 (599)
.+.|+++|++++|++. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999742 47999999999999999999999999999999999999999999999999998888888889
Q ss_pred hceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 534 ~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.++|++|++.+|+.|++||+.++......+++.+.++...++++++.+|.|+++.+.+...+||||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 154 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGG 154 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHH
Confidence 999999999999999999999876545556667777778899999999999999999999999996
No 60
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=3e-27 Score=214.64 Aligned_cols=125 Identities=31% Similarity=0.521 Sum_probs=113.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHhhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~---~lR~~i 535 (599)
|+|+||+.+|++++++|+||||+|++||.+-++|||||||||++|||++...|+.|+|.++|.|+..+..+ .+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 89999999999888899999999999999999999999999999999999999999999999999887744 689999
Q ss_pred eeeCCCCCCc-hhhHHHHhhcCC------CCCCHHHHHHHHHHcCchHHHhcCcC
Q 007539 536 GVVPQDTVLF-NDTIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 536 ~~V~Qd~~LF-~gTIreNI~~g~------~~~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+|+||-.|. +-|+.||++|.- |+.-.+++.++++.++|.+-...||.
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~ 136 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS 136 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc
Confidence 9999999876 569999999852 22335778999999999999999994
No 61
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=5.8e-27 Score=222.00 Aligned_cols=124 Identities=31% Similarity=0.492 Sum_probs=110.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+|+|||+.|. ++.+++|+||+|++||.++++|||||||||++|+|.|+++|++|+|+|||.|+++++..+||++||||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 79999999996 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc-hhhHHHHhhcC------CCCCCHHHHHHHHHHcCch--HHHhcCcC
Q 007539 539 PQDTVLF-NDTIFHNIRYG------RLSATEEEVYDAARRAAIH--DTIMNFPA 583 (599)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g------~~~~sdeei~~A~~~a~l~--d~I~~Lp~ 583 (599)
-|..-|| +-||.|||++- ++..-++++.+-++..+|+ +|..+.|+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~ 134 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH 134 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch
Confidence 9999999 57999999763 2222345677788888886 47777774
No 62
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.94 E-value=2.7e-26 Score=228.10 Aligned_cols=141 Identities=52% Similarity=0.858 Sum_probs=129.7
Q ss_pred EEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 459 IQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 459 I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
|+++|++++|++ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 578999999974 357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred eeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|++|++.+|+.|++||+.++.+....+++.++++..++.+++..+|.|+++.+.....+||||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 143 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGG 143 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHH
Confidence 999999999999999999986655667778888888999999999999999999999999996
No 63
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=6.1e-26 Score=220.15 Aligned_cols=127 Identities=32% Similarity=0.526 Sum_probs=117.7
Q ss_pred EEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhh
Q 007539 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 459 I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~ 534 (599)
|+++||+++|++. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 5799999999754 3799999999999999999999999999999999999999999999999 6
Q ss_pred ceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+||+|++.+|+.|++||+.++.. .+++++.++++.+++.+++..+|.|++|.+.+....||||
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G 131 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGG 131 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHH
Confidence 999999999999999999999743 4567788889999999999999999999999999999996
No 64
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.93 E-value=1.2e-25 Score=220.34 Aligned_cols=139 Identities=25% Similarity=0.402 Sum_probs=125.0
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH----HHHhhhc
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKSI 535 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~----~~lR~~i 535 (599)
.+.|+.|+|+++.++++|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++. ...|+.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 567999999866789999999999999999999999999999999999999999999999999876642 3456789
Q ss_pred eeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|++|++.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|.++....+||||
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 144 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG 144 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence 99999999999999999998753 4566778888988999999999999999999999999996
No 65
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.93 E-value=1.9e-22 Score=210.74 Aligned_cols=276 Identities=16% Similarity=0.198 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h
Q 007539 315 DNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGI----L 390 (599)
Q Consensus 315 ~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~ 390 (599)
.++..-...+...|.+.|--|+.++.+..+.+...+...+...+...+.-++.++.++.-.....+..++.+.-+ .
T Consensus 261 EGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~ 340 (659)
T KOG0060|consen 261 EGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHV 340 (659)
T ss_pred hcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccc
Confidence 334444556777789999999999888877777666665554444444334444444332111111111111111 2
Q ss_pred cCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------------c--------C
Q 007539 391 SGEMTVGDLVMVNG----LLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI-------------Q--------D 445 (599)
Q Consensus 391 ~g~lt~G~l~~~~~----~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~-------------~--------~ 445 (599)
.+.++..++...+. ++..+...+..+.....++.+-.+-..|+.|+++.-.+. . .
T Consensus 341 y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~ 420 (659)
T KOG0060|consen 341 YDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSL 420 (659)
T ss_pred cCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCC
Confidence 45677777765432 233344455555555556666666677777765321110 0 0
Q ss_pred CCCCCCCCCCCceEEEEEEEEeecCCC-cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 446 RDNAMPLNLKGGSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 446 ~~~~~~~~~~~~~I~f~nVsF~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
.++.....+.+..|+|++|++.=|++. -+.+|+||+|+.|+.+-|.||||||||+|++.|.|+++-.+|.+.--...-.
T Consensus 421 ~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~ 500 (659)
T KOG0060|consen 421 PPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP 500 (659)
T ss_pred CCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC
Confidence 011112223346899999999998644 4667799999999999999999999999999999999999999974321110
Q ss_pred CCCHHHHhhhceeeCCCCCCchhhHHHHhhcCC-------CCCCHHHHHHHHHHcCchHHHhcCcCccccccc-cCcccC
Q 007539 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG-ERGLKI 596 (599)
Q Consensus 525 ~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~-------~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vg-E~G~~L 596 (599)
+.+-||||.|+.=.||+||-+.|-. ..++|+++.+.++.+++.+.+ ...+|+|+++- |=..-|
T Consensus 501 --------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~-~r~ggld~~~~~dW~dvL 571 (659)
T KOG0060|consen 501 --------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL-EREGGLDQQVDWDWMDVL 571 (659)
T ss_pred --------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH-HHhCCCCchhhccHHhhc
Confidence 3488999999999999999998862 247899999999999998754 55789998764 334556
Q ss_pred CCC
Q 007539 597 EGK 599 (599)
Q Consensus 597 SG~ 599 (599)
|+|
T Consensus 572 S~G 574 (659)
T KOG0060|consen 572 SPG 574 (659)
T ss_pred CHH
Confidence 665
No 66
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=226.21 Aligned_cols=123 Identities=28% Similarity=0.491 Sum_probs=112.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+.+|++.. +++|+||+|+.||.++|+|||||||||++++|+||.+|++|+|+|||.++.++++++ +.|++
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEE
Confidence 699999999997544 999999999999999999999999999999999999999999999999999999877 78999
Q ss_pred eCCCCCCchh-hHHHHhhcCCCC------CCHHHHHHHHHHcCchHHHhcCcC
Q 007539 538 VPQDTVLFND-TIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~------~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+|+.-||.- ||+|||.|+-.. .-++++.++++..++.+.+++.|.
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~ 132 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL 132 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc
Confidence 9999999965 999999998432 236788999999999999999884
No 67
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.9e-25 Score=207.63 Aligned_cols=125 Identities=33% Similarity=0.552 Sum_probs=107.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC-CCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~-~~~~~~lR~~i~ 536 (599)
-|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.+|-+|++|+|.+||.++. +.+...+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 489999999995 567999999999999999999999999999999999999999999999998773 347889999999
Q ss_pred eeCCCCCCc-hhhHHHHhhcCCC---CCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 537 VVPQDTVLF-NDTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 537 ~V~Qd~~LF-~gTIreNI~~g~~---~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
+|+|+..|| +-|+.||++++-- ..+ ++.-.+.++++++.|-....|.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~ 135 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA 135 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc
Confidence 999999999 5699999998721 122 2344567788888888888773
No 68
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.7e-25 Score=209.80 Aligned_cols=120 Identities=27% Similarity=0.393 Sum_probs=106.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.+++++|+.+|+. ..||+|+||+|++||+++||||||||||||+++|+||.+|++|+|.++|.++..- ...++|
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEE
Confidence 5899999999965 7899999999999999999999999999999999999999999999999988543 347999
Q ss_pred eCCCCCCchh-hHHHHhhcCCCCC------CHHHHHHHHHHcCchHHHhcCcC
Q 007539 538 VPQDTVLFND-TIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~------sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+|++.||.- |++||+.++-+.. ..+.+.++++.++|.+|-.+.|.
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~ 129 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH 129 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc
Confidence 9999999986 9999999985421 24568899999999999998884
No 69
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.92 E-value=5e-25 Score=215.74 Aligned_cols=124 Identities=31% Similarity=0.531 Sum_probs=106.2
Q ss_pred EEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHhhh
Q 007539 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (599)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~---~lR~~ 534 (599)
|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999754 4799999999999999999999999999999999999999999999999999876643 47889
Q ss_pred ceeeCCCCCCch-hhHHHHhhcCC------CCCCHHHHHHHHHHcCchHHHhcCc
Q 007539 535 IGVVPQDTVLFN-DTIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 535 i~~V~Qd~~LF~-gTIreNI~~g~------~~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
++||+|++.+|. .|++||+.++. ++..++++.++++..++.++..+.|
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 136 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP 136 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh
Confidence 999999999986 59999998752 1123466788888888877766655
No 70
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=205.02 Aligned_cols=131 Identities=33% Similarity=0.519 Sum_probs=113.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---HHHHhhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~---~~~lR~~ 534 (599)
.|+++||+-.||+++.+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|.++|.++..+. ++.+|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 5899999999998889999999999999999999999999999999999999999999999999998888 6678889
Q ss_pred ceeeCCCCCCchh-hHHHHhhcCCCC-----------CC---HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 535 IGVVPQDTVLFND-TIFHNIRYGRLS-----------AT---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~~-----------~s---deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||+++|++.|-.. |+.+|+..|+-. .+ .+...+|++..++.|..- .+-.+||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LSGG 151 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLSGG 151 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCCcc
Confidence 9999999998865 899999887522 23 344677888888877643 356678886
No 71
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=8.7e-25 Score=222.84 Aligned_cols=123 Identities=29% Similarity=0.454 Sum_probs=110.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+.+|. +..+++|+||+|++||.+++.|||||||||++++|+||.+|++|+|.+||+|+.+++++ ++.|++
T Consensus 5 ~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~ 81 (352)
T COG3842 5 ALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGM 81 (352)
T ss_pred eEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccce
Confidence 699999999997 67899999999999999999999999999999999999999999999999999998875 478999
Q ss_pred eCCCCCCc-hhhHHHHhhcCCC---CCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 538 VPQDTVLF-NDTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~---~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+|+--|| +-||+|||.||-. ... ++.+.++++.+++.++-.+.|.
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~ 135 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH 135 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh
Confidence 99999999 5699999999953 122 2478999999999998877763
No 72
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=2.5e-24 Score=209.31 Aligned_cols=114 Identities=41% Similarity=0.690 Sum_probs=102.2
Q ss_pred CceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhh
Q 007539 456 GGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~ 534 (599)
.+.|+++|++++|++. .++|+|+||+|++|+.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 3579999999999753 579999999999999999999999999999999999999999999999999998888889999
Q ss_pred ceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHH
Q 007539 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAAR 570 (599)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~ 570 (599)
|+||+|++.+|++|++|||.+.++ .+++++.++++
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~ 118 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR 118 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh
Confidence 999999999999999999987653 45566655554
No 73
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.91 E-value=1.2e-24 Score=212.63 Aligned_cols=122 Identities=32% Similarity=0.540 Sum_probs=110.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.++++|++|+|+ ++++|+|+||+|++||.++|+||+|||||||+|+|+|+.+|.+|+|++||.++.+++.+++-+.+||
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 478999999996 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC-CCchhhHHHHhhcCCCC----------CCHHHHHHHHHHcCchHHHhc
Q 007539 538 VPQDT-VLFNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 538 V~Qd~-~LF~gTIreNI~~g~~~----------~sdeei~~A~~~a~l~d~I~~ 580 (599)
|||++ .-|.-|++|=+.+|+-. .+++.+.+|++..++.++..+
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 99996 56788999999999621 123458889999999887655
No 74
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-24 Score=219.83 Aligned_cols=126 Identities=27% Similarity=0.514 Sum_probs=111.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+|+|+++.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 58999999999755679999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eCCCC--CCchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 538 VPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 538 V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+|+| .+|..|++||+.++.. ..+ ++++.++++..++.++..+.|.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 137 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY 137 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh
Confidence 99998 6889999999998632 122 3567788888899887776664
No 75
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.8e-24 Score=211.20 Aligned_cols=130 Identities=31% Similarity=0.507 Sum_probs=111.7
Q ss_pred EEEEEEEEeecC-C---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHH
Q 007539 459 IQFDNVHFSYLT-E---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESL 531 (599)
Q Consensus 459 I~f~nVsF~Y~~-~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~---~~l 531 (599)
|+++||++.|+. . ..+|+|+||+|++|++.+|+|+||+|||||++++-+|-+|++|+|.+||+|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 899999999975 2 369999999999999999999999999999999999999999999999998888874 556
Q ss_pred hhhceeeCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|++||+|+|++.|++ .|+.|||+|.-+ ..+ ++++.+.++.++|.|.-..-| .+||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGG 145 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGG 145 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcc
Confidence 789999999999998 899999998632 122 355777888888888777766 578886
No 76
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.6e-24 Score=209.17 Aligned_cols=125 Identities=31% Similarity=0.513 Sum_probs=112.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC-CCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~-~~~~~~lR~~i~ 536 (599)
.|+++|++|+|+++.++|+|+||+|++|+.++|+|+||||||||+++|.|++.|++|+|.+||.++. +.+...+|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 5899999999987678999999999999999999999999999999999999999999999999998 488999999999
Q ss_pred eeCCCC--CCchhhHHHHhhcCCCC--CCH----HHHHHHHHHcCchHHHhcCc
Q 007539 537 VVPQDT--VLFNDTIFHNIRYGRLS--ATE----EEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~~--~sd----eei~~A~~~a~l~d~I~~Lp 582 (599)
||+|+| .+|..||.|.++||-++ .+. +.+.++++.++++++-+..|
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p 136 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP 136 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc
Confidence 999999 89999999999999542 344 44778888889988766555
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=1.8e-24 Score=213.47 Aligned_cols=131 Identities=33% Similarity=0.565 Sum_probs=110.5
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEECCEeCCCCC--HHHH
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----DTHSGSIRIDGQDICEVT--LESL 531 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly-----~p~~G~I~idG~di~~~~--~~~l 531 (599)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+++ ...+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 578999999964 57999999999999999999999999999999999999 999999999999998877 5678
Q ss_pred hhhceeeCCCCCCchhhHHHHhhcCCCC--C-----CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~gTIreNI~~g~~~--~-----sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+.++||+|++.+|+.|++||+.++... . .++++.++++..++.+.+.+.++ ..+||||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG 145 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGG 145 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHH
Confidence 8899999999999988999999875321 1 23567788888888776655432 4568875
No 78
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.2e-24 Score=219.65 Aligned_cols=135 Identities=22% Similarity=0.338 Sum_probs=108.2
Q ss_pred eEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC-------
Q 007539 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------- 526 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~------- 526 (599)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 69999999999742 3699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhhhceeeCCCC--CCchhhHHHHhhcCCC--CCCHHHHHHHHHHcCchHHHhcCcCccc-cccccC
Q 007539 527 ---------TLESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGER 592 (599)
Q Consensus 527 ---------~~~~lR~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~d~I~~Lp~G~d-T~vgE~ 592 (599)
+...+|+.|+||+|+| .+|+.|++|||.++.. ..++++..+.+ .++++.+ |++ ....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999988732 23444332211 2333333 343 345667
Q ss_pred cccCCCC
Q 007539 593 GLKIEGK 599 (599)
Q Consensus 593 G~~LSG~ 599 (599)
+.+||||
T Consensus 174 ~~~LSgG 180 (320)
T PRK13631 174 PFGLSGG 180 (320)
T ss_pred cccCCHH
Confidence 7889986
No 79
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.91 E-value=2.5e-24 Score=210.48 Aligned_cols=124 Identities=31% Similarity=0.505 Sum_probs=106.5
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHhhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~---~lR~~i 535 (599)
|+++|++++|+++.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 78999999996456899999999999999999999999999999999999999999999999999887643 467899
Q ss_pred eeeCCCCCCch-hhHHHHhhcCC------CCCCHHHHHHHHHHcCchHHHhcCc
Q 007539 536 GVVPQDTVLFN-DTIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~------~~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|++|++.+|. .|++||+.++. +...++++.++++..++.+...+.|
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 135 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh
Confidence 99999999996 69999998752 1123466788888888877666554
No 80
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.8e-24 Score=214.69 Aligned_cols=134 Identities=27% Similarity=0.463 Sum_probs=113.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCCHHHHhhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~---p~~G~I~idG~di~~~~~~~lR~~ 534 (599)
.|+++||++.|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.+||+++.+.+...+|+.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 478999999996 4579999999999999999999999999999999999985 699999999999998888888999
Q ss_pred ceeeCCCCCCchhhHHHHhhcCCC--------CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 535 IGVVPQDTVLFNDTIFHNIRYGRL--------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~--------~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+|+||++.+|..|++||+.++.. +..++++.++++..++++++..+ ..+.+.+||||
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 146 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGG 146 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHH
Confidence 999999999999999999987621 11234567788888887665532 34456778886
No 81
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.3e-24 Score=217.86 Aligned_cols=125 Identities=31% Similarity=0.483 Sum_probs=109.0
Q ss_pred eEEEEEEEEeecCC--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742 4699999999999999999999999999999999999999999999999999988888899999
Q ss_pred eeeCCCC--CCchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 536 GVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 536 ~~V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+||+|+| .+++.|++|||.++.. ..+ ++++.++++..++.++.+..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 138 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP 138 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc
Confidence 9999998 4677899999998732 122 355788888889988776655
No 82
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=9.7e-24 Score=213.61 Aligned_cols=149 Identities=26% Similarity=0.458 Sum_probs=123.7
Q ss_pred HHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 431 KSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 431 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
+.+.++++.+++... .. +.+...+.|+++||++. ++++|+|+||+|++|+++||+|+||||||||+++|+|+++
T Consensus 15 ~~~~~~~~~~~~~~~-~~--~~~~~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 15 EGFGELLEKAKQENN-DR--KHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred HHHHHHHhccccccc-cc--ccCCCCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455566665443221 11 12223347999999995 3579999999999999999999999999999999999999
Q ss_pred CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccc
Q 007539 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (599)
Q Consensus 511 p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vg 590 (599)
|++|+|.+|| .|+|++|++.+|++|++||+.++.. ..+.++.++++.+++.+.+..+|.+++|.++
T Consensus 89 p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~ 154 (282)
T cd03291 89 PSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLG 154 (282)
T ss_pred CCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceec
Confidence 9999999998 3999999999999999999998743 3445667778888999999999999999999
Q ss_pred cCcccCCCC
Q 007539 591 ERGLKIEGK 599 (599)
Q Consensus 591 E~G~~LSG~ 599 (599)
+.+..||||
T Consensus 155 ~~~~~LSgG 163 (282)
T cd03291 155 EGGITLSGG 163 (282)
T ss_pred CCCCcCCHH
Confidence 999999986
No 83
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=3.4e-24 Score=202.42 Aligned_cols=125 Identities=36% Similarity=0.555 Sum_probs=106.4
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHhh
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRK 533 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~---~lR~ 533 (599)
..|++++|+++|. ++.|++||||+|++||.++|+|+||||||||++++.|+..|++|+|+++|.|+.+++.+ .+|+
T Consensus 7 ~~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 3799999999994 67899999999999999999999999999999999999999999999999999999865 5688
Q ss_pred hceeeCCCCCCchh-hHHHHhhcCC---CCCCHHHHH----HHHHHcCchHH-HhcCc
Q 007539 534 SIGVVPQDTVLFND-TIFHNIRYGR---LSATEEEVY----DAARRAAIHDT-IMNFP 582 (599)
Q Consensus 534 ~i~~V~Qd~~LF~g-TIreNI~~g~---~~~sdeei~----~A~~~a~l~d~-I~~Lp 582 (599)
++|+++|..-||+. ||+||+.|-- .+.+++++. .-++.+||... -+.+|
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P 143 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP 143 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc
Confidence 99999999999977 9999998842 234454443 45566777766 44555
No 84
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=2.2e-24 Score=209.40 Aligned_cols=121 Identities=31% Similarity=0.472 Sum_probs=103.9
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (599)
+++||+++|++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+++.++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 468999999643679999999999999999999999999999999999999999999999998864 45677899999
Q ss_pred CCC--CCchhhHHHHhhcCCCCC--CHHHHHHHHHHcCchHHHhcCcC
Q 007539 540 QDT--VLFNDTIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 540 Qd~--~LF~gTIreNI~~g~~~~--sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
|++ .+|+.|++||+.++.+.. .++++.++++..++.++..+.|.
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL 125 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch
Confidence 998 478899999998864322 34578899999999887766663
No 85
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=1.6e-20 Score=188.00 Aligned_cols=272 Identities=21% Similarity=0.314 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 129 TALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVAL 208 (599)
Q Consensus 129 ~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~~~~ 208 (599)
+++++.++..+..+..|++++.++|.+........ .....+....++.. + +...+.....+...+...
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~ 70 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNN-----SSLISLAFLLIAIF----L---LIFLFSYIYFYLSSRISQ 70 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHH-----HHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh-----hHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHH
Confidence 44555666777777899999999998643221100 11111110000010 1 112233344445678899
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007539 209 RTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSL 288 (599)
Q Consensus 209 ~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~~~~~ 288 (599)
++..++|.++++|++++|.++|+++++|++.+++++|.+.++..+......++..+..++. ..++++.++|.++++.++
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~l~~l~ 149 (275)
T PF00664_consen 71 RIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF-SLILLFFISWKLALILLI 149 (275)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh-hhhcccccccccccccch
Confidence 9999999999999999999999999999999999999999888876666666655544333 334455568888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 289 SVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNF 368 (599)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (599)
..+++.++.....+..++..++..+..++..+.+.|.++|+++||+|+.|+++.+++++..++..+...+..+.......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (275)
T PF00664_consen 150 ILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSS 229 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667666777777777777788888999999999999999999999999999999999999998888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 007539 369 GQNVIFSAALSTAMVLCSHG-ILSGEMTVGDLVMVNGLLFQLSLPL 413 (599)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~-v~~g~lt~G~l~~~~~~~~~~~~pl 413 (599)
....+.......++++|++. +.+|.+|+|+++++..+...+..|+
T Consensus 230 ~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 230 ISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 66666666667777788888 9999999999999999999998885
No 86
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.4e-24 Score=211.82 Aligned_cols=121 Identities=33% Similarity=0.526 Sum_probs=102.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHhhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~---~~lR~~i 535 (599)
|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+.|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 57899999996 4579999999999999999999999999999999999999999999999999988764 5678899
Q ss_pred eeeCCCCCCchh-hHHHHhhcCCC---CCCH----HHHHHHHHHcCchHHHhc
Q 007539 536 GVVPQDTVLFND-TIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~---~~sd----eei~~A~~~a~l~d~I~~ 580 (599)
+||+|++.+|.. |++||+.++.. ..+. +++.++++..++.++..+
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 132 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL 132 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence 999999999986 99999987521 1232 345667777777655443
No 87
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=3.6e-24 Score=209.98 Aligned_cols=122 Identities=34% Similarity=0.485 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH----H
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES----L 531 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~----l 531 (599)
|+++||+++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999999753 57999999999999999999999999999999999999999999999999998877432 4
Q ss_pred hhhceeeCCCCCCchh-hHHHHhhcCCC--CC----CHHHHHHHHHHcCchHHHhc
Q 007539 532 RKSIGVVPQDTVLFND-TIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~----sdeei~~A~~~a~l~d~I~~ 580 (599)
++.++||+|++.+|.+ |++||+.++.. .. .++++.++++..++++...+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 136 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH 136 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc
Confidence 5789999999999986 99999987532 11 13456667777766554443
No 88
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.90 E-value=4.3e-24 Score=208.80 Aligned_cols=124 Identities=33% Similarity=0.543 Sum_probs=104.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHhhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~---~~lR~~i 535 (599)
|+++||+++|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 5789999999755679999999999999999999999999999999999999999999999999987764 3578899
Q ss_pred eeeCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 536 GVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+...+.|
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 134 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP 134 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh
Confidence 99999999998 499999987531 112 345677788878776655544
No 89
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.4e-24 Score=215.61 Aligned_cols=126 Identities=31% Similarity=0.466 Sum_probs=110.1
Q ss_pred eEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
-|+++||+++|++ .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 4899999999974 457999999999999999999999999999999999999999999999999999888888888999
Q ss_pred eeCCCC--CCchhhHHHHhhcCCCC--CC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 537 VVPQDT--VLFNDTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~~--~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
||+|++ .+++.|++|||.++... .+ ++++.++++..++++++...|.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH 139 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc
Confidence 999998 56788999999886311 22 3457788888899888877764
No 90
>PRK10908 cell division protein FtsE; Provisional
Probab=99.90 E-value=8.5e-24 Score=207.90 Aligned_cols=124 Identities=33% Similarity=0.559 Sum_probs=103.0
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hhhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~---lR~~i 535 (599)
|+++||+++|++++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.+++... +|+.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 789999999964567999999999999999999999999999999999999999999999999998876543 68899
Q ss_pred eeeCCCCCC-chhhHHHHhhcCC--CCCCH----HHHHHHHHHcCchHHHhcCc
Q 007539 536 GVVPQDTVL-FNDTIFHNIRYGR--LSATE----EEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 536 ~~V~Qd~~L-F~gTIreNI~~g~--~~~sd----eei~~A~~~a~l~d~I~~Lp 582 (599)
+||+|++.+ ++.|++||+.++. ...++ +++.++++..++.++..+.|
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 135 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc
Confidence 999999987 5679999998752 12233 24556777777766555433
No 91
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9.7e-24 Score=210.23 Aligned_cols=130 Identities=34% Similarity=0.538 Sum_probs=106.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---HHHHhhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~---~~~lR~~i 535 (599)
|+++||+++|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999964367999999999999999999999999999999999999999999999999998877 45678899
Q ss_pred eeeCCCCCCch-hhHHHHhhcCCCC--------------CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFN-DTIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~~--------------~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||||++.+|. .|++||+.++... ..++++.++++..++.+.. ......||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 148 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSGG 148 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCHH
Confidence 99999999887 6999999875321 1234456666666665433 3344578876
No 92
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=8e-24 Score=219.36 Aligned_cols=124 Identities=28% Similarity=0.454 Sum_probs=105.9
Q ss_pred EEEEEEEEeecC-C--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hh
Q 007539 459 IQFDNVHFSYLT-E--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (599)
Q Consensus 459 I~f~nVsF~Y~~-~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~---lR 532 (599)
|+++||+++|++ + .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999963 2 47999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hhceeeCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 533 ~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+.|+||+|++.+|. .|++||+.++.. ..+ ++++.++++.+++.+...+.|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~ 138 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP 138 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh
Confidence 89999999999995 799999987531 122 345678888888877665554
No 93
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.90 E-value=1.2e-23 Score=209.79 Aligned_cols=130 Identities=32% Similarity=0.527 Sum_probs=105.9
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHhhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~---~~lR~~i 535 (599)
|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 6899999999635679999999999999999999999999999999999999999999999999987764 3468899
Q ss_pred eeeCCCCCCch-hhHHHHhhcCCCC--------------CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFN-DTIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~~--------------~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||+|++.+|. .|++||+.++... ..++++.++++..++.++.. ....+||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 99999999886 6999999875321 11334566666666655433 344578876
No 94
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.8e-24 Score=209.72 Aligned_cols=131 Identities=29% Similarity=0.422 Sum_probs=106.0
Q ss_pred eEEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---H
Q 007539 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~---l 531 (599)
-|+++||+|+|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 47999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hhceeeCCCCCCchh-hHHHHhhcCCC--CC----CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 R-KSIGVVPQDTVLFND-TIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R-~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~----sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
| +.++||+|++.+|.. |++||+.++.. .. .++++.++++..++.+...+ ...+||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG 149 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGG 149 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHH
Confidence 3 679999999999875 99999987311 11 23456667777666554433 33567775
No 95
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=2e-23 Score=199.99 Aligned_cols=124 Identities=35% Similarity=0.474 Sum_probs=101.7
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HH-
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SL- 531 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~---~l- 531 (599)
++++||+..|..+ .++|+++||+|++||.+||+||||||||||+++|.++-.|++|.|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999999633 3699999999999999999999999999999999999999999999999999999854 34
Q ss_pred hhhceeeCCCCCCchh-hHHHHhhc----CCCCC--CHHHHHHHHHHcCchHHHh-cCc
Q 007539 532 RKSIGVVPQDTVLFND-TIFHNIRY----GRLSA--TEEEVYDAARRAAIHDTIM-NFP 582 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~g-TIreNI~~----g~~~~--sdeei~~A~~~a~l~d~I~-~Lp 582 (599)
|++||||+|+..|+.. |++|||.+ ..... .++.+.+.++..++.+... +.|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc
Confidence 4569999999998865 99999984 22221 2455666677778876555 444
No 96
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.4e-23 Score=213.09 Aligned_cols=125 Identities=26% Similarity=0.499 Sum_probs=108.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-++++||+++|++..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 47899999999755679999999999999999999999999999999999999999999999999988888888999999
Q ss_pred eCCCC--CCchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++ .+|+.|++||+.++.. ..+ ++.+.++++..++.++....|
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 135 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP 135 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc
Confidence 99998 4788999999987531 223 245678888888887766655
No 97
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=207.68 Aligned_cols=117 Identities=36% Similarity=0.567 Sum_probs=103.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+|+|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999996 4579999999999999999999999999999999999999999999999999988888888999999
Q ss_pred eCCCCCCchhhHHHHhhcCCC--CCCHHHHHHHHHHcCch
Q 007539 538 VPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIH 575 (599)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~ 575 (599)
++|++.+|+.|++||+.++.. ...++++.+.++..++.
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~ 121 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLN 121 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCC
Confidence 999999999999999987632 12245566777776664
No 98
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.7e-23 Score=203.35 Aligned_cols=127 Identities=31% Similarity=0.500 Sum_probs=109.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++|++|+|.+. ++|+||||+|++|+++||+||+|||||||+|+++|+.+|++|+|.++|.+.++... +..|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY 79 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence 69999999999755 79999999999999999999999999999999999999999999999998776543 568999
Q ss_pred eCCCC---CCchhhHHHHhhcCCCC----------CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDT---VLFNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~---~LF~gTIreNI~~g~~~----------~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|||.. +=|.-||+|=+.+|+.. .+.+++.+|++.+++.++..+ ++|| ||||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~~----LSGG 143 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIGE----LSGG 143 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cccc----cCcH
Confidence 99955 56899999999998532 134889999999999987644 4554 8886
No 99
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.90 E-value=9.1e-24 Score=207.44 Aligned_cols=119 Identities=28% Similarity=0.414 Sum_probs=99.3
Q ss_pred EEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
|+++||+++|+++ +++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|.+||.++.... ..++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999753 67999999999999999999999999999999999999999999999999987643 677889999
Q ss_pred eCCCCCCc-hhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHH
Q 007539 538 VPQDTVLF-NDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTI 578 (599)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I 578 (599)
|+|++.+| +.|++||+.++.. ..+ ++++.++++..++.+..
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 127 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA 127 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998 6799999987421 112 24456667766665543
No 100
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=212.98 Aligned_cols=125 Identities=35% Similarity=0.567 Sum_probs=106.6
Q ss_pred eEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
.|+++|++++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 6999999999973 568999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eeCCCC--CCchhhHHHHhhcCCC--CCCHH----HHHHHHHHcCchHHHhcCc
Q 007539 537 VVPQDT--VLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~--~~sde----ei~~A~~~a~l~d~I~~Lp 582 (599)
||+|++ .+++.|++|||.++.. ..+.+ .+.++++..++.++..+.|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP 140 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc
Confidence 999998 4667899999987531 12332 3566777778877665544
No 101
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.90 E-value=1.2e-23 Score=206.20 Aligned_cols=129 Identities=25% Similarity=0.391 Sum_probs=105.5
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
|+++||+++|++. .++|+|+||+|++|+.+||+|+||||||||+++|+|+++|++|+|.+||.++.. ...++|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 6899999999743 179999999999999999999999999999999999999999999999999976 456778899
Q ss_pred eeeCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|++|++.+|.. |++||+.+... ..+ ++++.++++..++.+...+ ...+||||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G 140 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTG 140 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHH
Confidence 999999999985 99999976421 112 3456667777776555433 44567765
No 102
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=9.1e-24 Score=206.04 Aligned_cols=123 Identities=34% Similarity=0.563 Sum_probs=103.0
Q ss_pred EEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 460 QFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 460 ~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
+++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 468999999642 5799999999999999999999999999999999999999999999999999988888889999999
Q ss_pred CCCC--CCchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+|++ .+++.|++||+.++.. ..+ ++++.++++..++.+++.+.|
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 132 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP 132 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 9998 4678899999987532 122 234566777777766554433
No 103
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1e-23 Score=220.33 Aligned_cols=124 Identities=29% Similarity=0.448 Sum_probs=108.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+++.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+++.. ++.|+|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 489999999995456799999999999999999999999999999999999999999999999999887764 478999
Q ss_pred eCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.|.
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 133 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR 133 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh
Confidence 999999995 699999998742 122 3557788899999888877763
No 104
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.4e-24 Score=207.00 Aligned_cols=121 Identities=31% Similarity=0.503 Sum_probs=100.9
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEE
Confidence 578999999964 67999999999999999999999999999999999999999999999999998654 356789999
Q ss_pred CCCCCCch-hhHHHHhhcCCCC--C----CHHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDTVLFN-DTIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~--~----sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|++.+|. .|++||+.++... . .++++.++++..++.++..+.|
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 128 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP 128 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh
Confidence 99999886 6999999875321 1 1345667777777766655544
No 105
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.5e-23 Score=213.81 Aligned_cols=133 Identities=33% Similarity=0.553 Sum_probs=107.0
Q ss_pred eEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--HHHH
Q 007539 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--LESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~--~~~l 531 (599)
.|+++||+|+|++. +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38999999999742 47999999999999999999999999999999999999999999999999998754 4578
Q ss_pred hhhceeeCCCC--CCchhhHHHHhhcCCC--CCCHH----HHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~sde----ei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+.|+||||+| .+|+.|++|||.++.. ..+.+ ++.++++.+++. +++........||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgG 148 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGG 148 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHH
Confidence 88999999998 6889999999987631 23333 456666666664 012233344678876
No 106
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.90 E-value=1.3e-23 Score=205.38 Aligned_cols=122 Identities=31% Similarity=0.517 Sum_probs=99.8
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CCHHHHhhhce
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIG 536 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~--~~~~~lR~~i~ 536 (599)
|+++||+++|++ +++|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 578999999964 579999999999999999999999999999999999999999999999999853 45567888999
Q ss_pred eeCCCCCCch-hhHHHHhhcCCC---CCCH----HHHHHHHHHcCchHHHhcC
Q 007539 537 VVPQDTVLFN-DTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~---~~sd----eei~~A~~~a~l~d~I~~L 581 (599)
||+|++.+|. .|++||+.++.. +.+. +++.++++..++.+.+.+.
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 132 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY 132 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC
Confidence 9999999986 699999987531 2222 3455556666665544443
No 107
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.90 E-value=2.8e-23 Score=204.59 Aligned_cols=131 Identities=29% Similarity=0.472 Sum_probs=108.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++|
T Consensus 7 ~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 599999999996 4679999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eCCCCCCchhhHHHHhhcCC---CC-CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVLFNDTIFHNIRYGR---LS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~---~~-~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+|++.+|+.|++||+.++. .. ..++++.++++..++.+ +.......+||||
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G 141 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGG 141 (225)
T ss_pred EecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHH
Confidence 99999999999999998631 11 12344556666666532 2223445567775
No 108
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.90 E-value=1.7e-23 Score=203.68 Aligned_cols=119 Identities=20% Similarity=0.390 Sum_probs=103.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|+ ++++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ..+|+.++||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 57899999995 46899999999999999999999999999999999999999999999999988765 5678899999
Q ss_pred CCCCCCc-hhhHHHHhhcCC--CCCCHHHHHHHHHHcCchHHHhc
Q 007539 539 PQDTVLF-NDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~--~~~sdeei~~A~~~a~l~d~I~~ 580 (599)
+|++.+| +.|++||+.++. ...+++++.++++..++.+...+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 122 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK 122 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh
Confidence 9999888 579999998753 12356778888899888776544
No 109
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-23 Score=209.85 Aligned_cols=134 Identities=32% Similarity=0.500 Sum_probs=110.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~~ 530 (599)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+...
T Consensus 6 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 699999999996 4579999999999999999999999999999999999975 689999999999875 34567
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--C-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|..|++||+.++.. . ..++++.++++.+++.+++.. .......+||||
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG 153 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGG 153 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHH
Confidence 8889999999999999999999987521 1 124567778888887665432 234556678886
No 110
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.1e-23 Score=206.65 Aligned_cols=124 Identities=30% Similarity=0.457 Sum_probs=103.6
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHh
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLR 532 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~---~lR 532 (599)
|+++|++++|++. .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999743 2799999999999999999999999999999999999999999999999999887654 347
Q ss_pred hhceeeCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 533 ~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+.++||||++.+|. .|++||+.++.. ..+ ++++.++++..++.+...+.|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 138 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP 138 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh
Confidence 88999999999997 699999987421 112 345677777777766655543
No 111
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=9.5e-24 Score=187.79 Aligned_cols=120 Identities=29% Similarity=0.494 Sum_probs=103.0
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhH
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTI 549 (599)
.+.++|+|+||++.+||.+||.||||||||||+|.++-|..|++|++++.|.|+.+++++.+|.+|+|+.|.|-||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC----CCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 550 FHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 550 reNI~~g----~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.||+.|- +...+.+...+-++.+++.+.+ +..+-.+||||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGG 137 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGG 137 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccch
Confidence 9999774 1223445555666666665544 44456778886
No 112
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.3e-23 Score=210.33 Aligned_cols=124 Identities=27% Similarity=0.417 Sum_probs=107.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|
T Consensus 11 ~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 699999999996 4579999999999999999999999999999999999999999999999999988888889999999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC----------CCCHHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~----------~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++.++.+ |+.||+.++.. ...++++.++++.+++.+++...|
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 145 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV 145 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc
Confidence 9999877654 99999987531 112456788888888877666554
No 113
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.8e-23 Score=204.00 Aligned_cols=118 Identities=30% Similarity=0.520 Sum_probs=101.2
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+|+|++ .++|+|+||+|++| ++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++||
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 579999999964 57999999999999 99999999999999999999999999999999999998877 7788999999
Q ss_pred CCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHh
Q 007539 539 PQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIM 579 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~ 579 (599)
+|++.+|.+ |++||+.+... ..+ ++++.++++..++.++.+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 125 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK 125 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh
Confidence 999999986 99999976310 111 355777888888876543
No 114
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3e-23 Score=211.64 Aligned_cols=117 Identities=24% Similarity=0.466 Sum_probs=99.1
Q ss_pred EEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CCHHH
Q 007539 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLES 530 (599)
Q Consensus 459 I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----~~~~~ 530 (599)
|+++||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999743 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhhceeeCCCC--CCchhhHHHHhhcCCCC--CCH----HHHHHHHHHcCch
Q 007539 531 LRKSIGVVPQDT--VLFNDTIFHNIRYGRLS--ATE----EEVYDAARRAAIH 575 (599)
Q Consensus 531 lR~~i~~V~Qd~--~LF~gTIreNI~~g~~~--~sd----eei~~A~~~a~l~ 575 (599)
+|+.++||+|+| .+|+.|+.|||.++... .+. +++.++++..++.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 134 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA 134 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 899999999998 79999999999987421 233 3455666666663
No 115
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3e-23 Score=208.92 Aligned_cols=135 Identities=29% Similarity=0.489 Sum_probs=111.2
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~ 529 (599)
+.|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+..
T Consensus 12 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 12 SKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred ceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 4799999999996 4579999999999999999999999999999999999996 589999999999863 4566
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCCC---CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~~---~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.|+||+|++.+|..|++||+.++.. ..+ ++++.++++.+++.+.+. ..+.+...+||||
T Consensus 91 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred HHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 78999999999999999999999987532 122 345677888877754432 2344566778886
No 116
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.5e-23 Score=212.17 Aligned_cols=135 Identities=31% Similarity=0.519 Sum_probs=104.7
Q ss_pred eEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHH
Q 007539 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~----~~~ 529 (599)
.|+++||+|+|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 48999999999642 4699999999999999999999999999999999999999999999999999754 346
Q ss_pred HHhhhceeeCCCC--CCchhhHHHHhhcCCC--CCCHHHHHHHHHHcCchHHHhcCcCcccc-ccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~d~I~~Lp~G~dT-~vgE~G~~LSG~ 599 (599)
.+|+.|+||+|+| .+|..|+.|||.++.. ..+.++..+.+ .+.++.+ |+++ .......+||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgG 149 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGG 149 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHH
Confidence 7899999999997 6899999999998632 23433332221 1223322 4443 233456678886
No 117
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.89 E-value=4e-23 Score=199.81 Aligned_cols=118 Identities=21% Similarity=0.384 Sum_probs=104.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++|+
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 57899999996 457999999999999999999999999999999999999999999999999987654 5678899999
Q ss_pred CCCCCCc-hhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHH
Q 007539 539 PQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578 (599)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I 578 (599)
+|++.++ +.|++||+.+..+..+++++.++++..++.++.
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~ 119 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE 119 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh
Confidence 9999886 689999998876555677888899999887654
No 118
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.89 E-value=1.2e-23 Score=208.94 Aligned_cols=98 Identities=29% Similarity=0.454 Sum_probs=89.7
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhcee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~~ 537 (599)
|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 47899999996 4579999999999999999999999999999999999999999999999999998886654 567999
Q ss_pred eCCCCCCchh-hHHHHhhcCC
Q 007539 538 VPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~ 557 (599)
|+|++.+|.+ |++|||.++.
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~ 100 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAA 100 (236)
T ss_pred EecccccccCCCHHHHHHHHH
Confidence 9999999986 9999998764
No 119
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=2.6e-23 Score=204.38 Aligned_cols=122 Identities=31% Similarity=0.484 Sum_probs=99.6
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hh
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~---lR 532 (599)
|+++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 47999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -hhceeeCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhc
Q 007539 533 -KSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 533 -~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~ 580 (599)
+.++||+|++.+|. .|++||+.++.. ..+ ++++.++++..++++...+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 137 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH 137 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC
Confidence 67999999999995 599999987421 111 2345666666666554443
No 120
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.89 E-value=2.6e-23 Score=205.33 Aligned_cols=126 Identities=27% Similarity=0.400 Sum_probs=105.8
Q ss_pred eEEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---H
Q 007539 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~---l 531 (599)
-|+++||+++|++. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 58999999999753 36999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hhhceeeCCCCCCchh-hHHHHhhcCC--CC----CCHHHHHHHHHHcCchHHHhcCcC
Q 007539 532 -RKSIGVVPQDTVLFND-TIFHNIRYGR--LS----ATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 532 -R~~i~~V~Qd~~LF~g-TIreNI~~g~--~~----~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
++.++|++|++.+|.. |++||+.++. .. ...+++.++++..++.+++...|.
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh
Confidence 3579999999999875 9999997641 11 124567788888888777666553
No 121
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.5e-23 Score=210.74 Aligned_cols=131 Identities=26% Similarity=0.458 Sum_probs=108.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~~~~~~lR~~i 535 (599)
-|+++||+|+|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 5899999999975567999999999999999999999999999999999999999999999999984 34566788999
Q ss_pred eeeCCCC--CCchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||+|++ .+|+.|++|||.++.. ..+ ++++.++++..+++++.. ....+||||
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G 145 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFG 145 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHH
Confidence 9999998 6789999999987532 123 244666777777765433 334567775
No 122
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.89 E-value=2.2e-23 Score=205.02 Aligned_cols=99 Identities=36% Similarity=0.644 Sum_probs=90.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhcee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~~ 537 (599)
|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.... |+.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 57899999996 3579999999999999999999999999999999999999999999999999988877654 667999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL 558 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~ 558 (599)
|+|++.+|.+ |++||+.++.+
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~ 101 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAY 101 (222)
T ss_pred eccccccCCCCcHHHHHHHHhh
Confidence 9999999986 99999988643
No 123
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.3e-23 Score=207.56 Aligned_cols=132 Identities=28% Similarity=0.409 Sum_probs=106.5
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
++++||+++|++.+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++||
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 47899999997436799999999999999999999999999999999999999999999999999988888888999999
Q ss_pred CCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 539 PQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+ +....+...+||||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G 139 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGG 139 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHH
Confidence 99999995 699999987521 112 234555566555542 01223345678876
No 124
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.4e-23 Score=209.94 Aligned_cols=126 Identities=27% Similarity=0.469 Sum_probs=109.1
Q ss_pred ceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCCCCHHHHh
Q 007539 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~di~~~~~~~lR 532 (599)
..|+++|++|+|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...++
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 36999999999974 3579999999999999999999999999999999999999998 8999999999888877888
Q ss_pred hhceeeCCCC--CCchhhHHHHhhcCCC--CCCH----HHHHHHHHHcCchHHHhcCc
Q 007539 533 KSIGVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 533 ~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~d~I~~Lp 582 (599)
++++||+|++ .+++.|++|||.++.+ ..+. +++.++++..++.++....|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 141 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP 141 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc
Confidence 9999999998 4678999999987632 2333 44777888889888777666
No 125
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=2.1e-23 Score=188.21 Aligned_cols=120 Identities=33% Similarity=0.454 Sum_probs=105.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|.+++|.|+|.... =.++++|++||++||+||||||||||++|++||..|.+|+|.|||+|....++.+ +-++++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSML 76 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhh
Confidence 56889999996322 2578999999999999999999999999999999999999999999998877654 569999
Q ss_pred CCCCCCch-hhHHHHhhcCC-CC-----CCHHHHHHHHHHcCchHHHhcCcC
Q 007539 539 PQDTVLFN-DTIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~-~~-----~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+||..||. -||++||.+|. |. ...+.+..|+..+|+.++.++||.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~ 128 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG 128 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc
Confidence 99999996 49999999995 32 235779999999999999999995
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.7e-23 Score=209.55 Aligned_cols=124 Identities=25% Similarity=0.451 Sum_probs=104.2
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHHhhhcee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~-~~~lR~~i~~ 537 (599)
|+++||+++|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 789999999975567999999999999999999999999999999999999999999999999998775 4678889999
Q ss_pred eCCCCC--CchhhHHHHhhcCCCC--CC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTV--LFNDTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~--LF~gTIreNI~~g~~~--~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++. +++.|++|||.++... .+ ++++.++++..++.++....|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 134 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP 134 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc
Confidence 999985 6788999999886321 22 345666777777766655433
No 127
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.89 E-value=2.4e-23 Score=203.38 Aligned_cols=121 Identities=27% Similarity=0.468 Sum_probs=100.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. ++.++||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEE
Confidence 578999999964 5799999999999999999999999999999999999999999999999999776543 4689999
Q ss_pred CCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+|++.+|. .|++||+.++.. ..+ ++++.++++..++.++....|
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 128 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP 128 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh
Confidence 99999985 699999987521 112 345566777777776655544
No 128
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3e-23 Score=206.32 Aligned_cols=121 Identities=31% Similarity=0.468 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 4899999999964 679999999999999999999999999999999999999999999999999876653 3578999
Q ss_pred eCCCCCCch-hhHHHHhhcCCCC--C----C----HHHHHHHHHHcCchHHHhcC
Q 007539 538 VPQDTVLFN-DTIFHNIRYGRLS--A----T----EEEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~--~----s----deei~~A~~~a~l~d~I~~L 581 (599)
|+|++.+|. .|++||+.++... . + ++++.++++..++.+...+.
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 133 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence 999999986 6999999876321 1 1 23456667777776554443
No 129
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4e-23 Score=208.67 Aligned_cols=135 Identities=30% Similarity=0.448 Sum_probs=111.0
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~ 529 (599)
..|+++||+|+|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+..
T Consensus 19 ~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 4799999999995 4689999999999999999999999999999999999997 589999999999864 3456
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCCCC--C-----CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~--~-----sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.|+||+|++.+|..|++|||.++... . .++++.++++..++.+++. +.+......||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 778899999999999999999999875321 1 1345667777877765553 2345566778886
No 130
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.6e-23 Score=209.01 Aligned_cols=135 Identities=33% Similarity=0.505 Sum_probs=110.6
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--~~~~ 529 (599)
+.|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+..
T Consensus 18 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 18 IKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred ceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 4799999999996 45799999999999999999999999999999999999975 89999999999875 3456
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCCC-------CC-CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL-------SA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~~-------~~-sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.++||+|++.+|..|++||+.++.. .. .++++.++++..++.+++.. ........||||
T Consensus 97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG 167 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSGG 167 (267)
T ss_pred HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHH
Confidence 78889999999999999999999987521 11 13456778888888655432 234455678876
No 131
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3e-23 Score=216.35 Aligned_cols=122 Identities=26% Similarity=0.432 Sum_probs=102.3
Q ss_pred EEEEEEEEeec--C-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hh
Q 007539 459 IQFDNVHFSYL--T-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (599)
Q Consensus 459 I~f~nVsF~Y~--~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~---lR 532 (599)
|+++||+|+|+ + +.++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 2 357999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hhceeeCCCCCCch-hhHHHHhhcCCC--CCCH----HHHHHHHHHcCchHHHhc
Q 007539 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 533 ~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~sd----eei~~A~~~a~l~d~I~~ 580 (599)
++|+||+|++.+|. .|++||+.++.. ..++ +++.++++..++.++..+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 136 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR 136 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC
Confidence 88999999999986 699999987521 1222 445667777776655444
No 132
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.89 E-value=1.8e-23 Score=204.32 Aligned_cols=116 Identities=32% Similarity=0.491 Sum_probs=98.1
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (599)
+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .+|+.++||+
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 46899999964 57999999999999999999999999999999999999999999999998764 4678999999
Q ss_pred CCCCC---chhhHHHHhhcCCCC----------CCHHHHHHHHHHcCchHHHhcC
Q 007539 540 QDTVL---FNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 540 Qd~~L---F~gTIreNI~~g~~~----------~sdeei~~A~~~a~l~d~I~~L 581 (599)
|++.+ |+.|++||+.++... ..++++.++++..++.++..+.
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 129 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ 129 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC
Confidence 99987 668999999876421 1235677888888887765543
No 133
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4e-23 Score=210.93 Aligned_cols=118 Identities=32% Similarity=0.531 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CCHH
Q 007539 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----~~~~ 529 (599)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999742 469999999999999999999999999999999999999999999999999864 3456
Q ss_pred HHhhhceeeCCCC--CCchhhHHHHhhcCCC--CCCH----HHHHHHHHHcCch
Q 007539 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIH 575 (599)
Q Consensus 530 ~lR~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~ 575 (599)
.+|+.|+||+|+| .+|+.|++|||.++.. ..+. +.+.++++.++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 135 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLP 135 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCC
Confidence 7888999999998 6899999999988632 2233 3455666666665
No 134
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2e-23 Score=205.03 Aligned_cols=119 Identities=27% Similarity=0.382 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
|+++|++++|++. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 5789999999742 579999999999999999999999999999999999999999999999998863 46789
Q ss_pred eeeCCCCCCch-hhHHHHhhcCCC--CC----CHHHHHHHHHHcCchHHHhcCc
Q 007539 536 GVVPQDTVLFN-DTIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~--~~----sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+||+|++.+|. .|++||+.++.. .. .++++.++++..++.+...+.|
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 129 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP 129 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc
Confidence 99999999997 699999987521 11 2356777888888877666555
No 135
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.89 E-value=5.6e-23 Score=205.83 Aligned_cols=125 Identities=26% Similarity=0.401 Sum_probs=106.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++. .+++.++|
T Consensus 12 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~ 85 (257)
T PRK11247 12 PLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRL 85 (257)
T ss_pred cEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEE
Confidence 599999999996 467999999999999999999999999999999999999999999999998763 46788999
Q ss_pred eCCCCCCch-hhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+|++.+|. .|++||+.++.....++++.++++..++.+...+. ..+||||
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG 137 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGG 137 (257)
T ss_pred EecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHH
Confidence 999999987 69999998864323456778888888887654443 3567775
No 136
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.6e-23 Score=207.66 Aligned_cols=134 Identities=30% Similarity=0.469 Sum_probs=109.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--~~~~~ 530 (599)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||+++.. .+...
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 6999999999963 5799999999999999999999999999999999999997 48999999999863 34567
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCCC-------CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS-------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~~-------~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.|+||+|++.+|+.|++|||.++... ..++++.++++.+++.+.+ ++.+++ ...+||||
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG 154 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGG 154 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHH
Confidence 88899999999999999999999876311 1134567777777765433 334454 45678886
No 137
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.4e-23 Score=206.49 Aligned_cols=122 Identities=25% Similarity=0.472 Sum_probs=105.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 378999999996 4679999999999999999999999999999999999999999999999999998888888889999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC----------CCCHHHHHHHHHHcCchHHHhc
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~----------~~sdeei~~A~~~a~l~d~I~~ 580 (599)
|+|++.+|.+ |+.||+.++.. ...++++.++++..++.+....
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 134 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR 134 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC
Confidence 9999999876 99999988631 1123456777887787665444
No 138
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.89 E-value=3.6e-23 Score=206.81 Aligned_cols=133 Identities=32% Similarity=0.542 Sum_probs=108.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCCC--CHHHH
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICEV--TLESL 531 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~~~--~~~~l 531 (599)
|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +...+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999964 56999999999999999999999999999999999999998 99999999999763 45677
Q ss_pred hhhceeeCCCCCCchhhHHHHhhcCCC--C-C----CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--S-A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~gTIreNI~~g~~--~-~----sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+.++||||++.+|..|++||+.++.. . . .++++.++++..++.+++.. .......+||||
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG 148 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGG 148 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHH
Confidence 889999999999999999999987421 1 1 13456778888888744421 123344568876
No 139
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4e-23 Score=215.22 Aligned_cols=122 Identities=24% Similarity=0.399 Sum_probs=105.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+|
T Consensus 6 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICM 82 (351)
T ss_pred EEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 699999999996 4679999999999999999999999999999999999999999999999999988764 3578999
Q ss_pred eCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.|
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~ 134 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV 134 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 999999996 599999998732 122 356778888888877665554
No 140
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.3e-23 Score=209.21 Aligned_cols=125 Identities=26% Similarity=0.427 Sum_probs=106.8
Q ss_pred eEEEEEEEEeecC-----CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHH
Q 007539 458 SIQFDNVHFSYLT-----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~-----~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~-~~~l 531 (599)
-|+++||+++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 5899999999973 247999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hhhceeeCCCC--CCchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 532 RKSIGVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 532 R~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+.++||+|++ .+|..|+.||+.++.. ..+ ++++.++++.+++.++..+.|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP 142 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc
Confidence 88999999998 4777799999988631 122 456788888889988877765
No 141
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9.6e-23 Score=206.09 Aligned_cols=135 Identities=35% Similarity=0.503 Sum_probs=109.5
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~ 529 (599)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 36999999999963 579999999999999999999999999999999999997 699999999999863 5667
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCCCC--C---CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~--~---sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++|+.++||+|++.+|..|++||+.++... . .++++.++++.+++.+.+. +.......+||||
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G 158 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGG 158 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHH
Confidence 888899999999999999999999876421 1 1345666777776644332 2334455678876
No 142
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=8.7e-23 Score=197.35 Aligned_cols=116 Identities=23% Similarity=0.391 Sum_probs=98.2
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|++++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~ 79 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEe
Confidence 689999999964 579999999999999999999999999999999999999999999999999875 345778899999
Q ss_pred CCCCCCc-hhhHHHHhhcCC-CCCCHHHHHHHHHHcCchH
Q 007539 539 PQDTVLF-NDTIFHNIRYGR-LSATEEEVYDAARRAAIHD 576 (599)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~-~~~sdeei~~A~~~a~l~d 576 (599)
+|++.++ ..|++||+.++. ....++++.++++..++.+
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 119 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH 119 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch
Confidence 9999986 579999998763 1123345666666666544
No 143
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=9e-23 Score=205.09 Aligned_cols=122 Identities=28% Similarity=0.430 Sum_probs=104.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 3789999999964 679999999999999999999999999999999999999999999999999988888888889999
Q ss_pred eCCCCCC-chhhHHHHhhcCCCCC------CHHHHHHHHHHcCchHHHhc
Q 007539 538 VPQDTVL-FNDTIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~~------sdeei~~A~~~a~l~d~I~~ 580 (599)
++|++.+ ++.|++||+.++.... .++++.++++..++.+...+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 130 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR 130 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC
Confidence 9999987 6789999998763211 23456777887777665444
No 144
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.89 E-value=4.9e-23 Score=214.93 Aligned_cols=122 Identities=27% Similarity=0.428 Sum_probs=104.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|+|
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 589999999996 46799999999999999999999999999999999999999999999999999887654 678999
Q ss_pred eCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++.++.|
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~ 132 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP 132 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh
Confidence 999999995 699999998732 122 355777788777776665544
No 145
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.89 E-value=4.8e-23 Score=206.57 Aligned_cols=123 Identities=32% Similarity=0.559 Sum_probs=101.7
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-----------
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----------- 527 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~----------- 527 (599)
|+++||+|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 57999999996 467999999999999999999999999999999999999999999999999987653
Q ss_pred --HHHHhhhceeeCCCCCCch-hhHHHHhhcCCC---CC----CHHHHHHHHHHcCchHHHhcCc
Q 007539 528 --LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SA----TEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 528 --~~~lR~~i~~V~Qd~~LF~-gTIreNI~~g~~---~~----sdeei~~A~~~a~l~d~I~~Lp 582 (599)
...+|+.++||+|++.+|. .|+.||+.++.. .. .++++.++++..++.+...+.|
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 144 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP 144 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh
Confidence 2467889999999999885 799999987521 11 2345666777777766555444
No 146
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.9e-23 Score=207.56 Aligned_cols=136 Identities=32% Similarity=0.534 Sum_probs=111.6
Q ss_pred CceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCH
Q 007539 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTL 528 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--~~~ 528 (599)
.+.|+++||+|+|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 34799999999996 35799999999999999999999999999999999999984 89999999999865 445
Q ss_pred HHHhhhceeeCCCCCCchhhHHHHhhcCCC--CC-----CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 529 ~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-----sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
..+|+.++||+|++.+|..|++||+.++.. .. .++++.++++.+++.+++.. ..+..+..||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 678899999999999999999999987521 11 13447777777777655432 345566788886
No 147
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=6.3e-23 Score=216.43 Aligned_cols=122 Identities=25% Similarity=0.472 Sum_probs=109.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|+|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 489999999996 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC-chhhHHHHhhcCCC----------CCCHHHHHHHHHHcCchHHHhc
Q 007539 538 VPQDTVL-FNDTIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~----------~~sdeei~~A~~~a~l~d~I~~ 580 (599)
|+|++.+ |+.|++||+.+++. ..+++++.++++..++.++..+
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~ 135 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR 135 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC
Confidence 9999987 78899999988742 1234568889999998876644
No 148
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.3e-23 Score=207.44 Aligned_cols=124 Identities=30% Similarity=0.473 Sum_probs=106.1
Q ss_pred eEEEEEEEEeecCC--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
-|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999742 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eeeCCCC--CCchhhHHHHhhcCCC--CCCH----HHHHHHHHHcCchHHHhcC
Q 007539 536 GVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 536 ~~V~Qd~--~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~d~I~~L 581 (599)
+||+|++ .+++.|+.|||.++.. ..++ +++.++++.+++.++....
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 137 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE 137 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC
Confidence 9999998 4778999999987531 2333 3456777888887765553
No 149
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.89 E-value=5.9e-23 Score=201.60 Aligned_cols=125 Identities=24% Similarity=0.387 Sum_probs=105.6
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHh
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLR 532 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~---~lR 532 (599)
|+++||++.|+++ +++|+|+||++++|+++||+|+||||||||+++|+|+++|++|+|++||.++.+++.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999742 5699999999999999999999999999999999999999999999999999877743 468
Q ss_pred hhceeeCCCCCCch-hhHHHHhhcCC---CCCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 533 KSIGVVPQDTVLFN-DTIFHNIRYGR---LSAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 533 ~~i~~V~Qd~~LF~-gTIreNI~~g~---~~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
+.++|++|++.+|. .|+.||+.++. +..+ ++++.++++..++.+++.+.|.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH 140 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChh
Confidence 89999999999997 69999998753 1222 2346777777777777766653
No 150
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=7.7e-23 Score=200.81 Aligned_cols=122 Identities=23% Similarity=0.377 Sum_probs=102.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+++.++||
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEe
Confidence 578999999964 5799999999999999999999999999999999999999999999999998763 35678899999
Q ss_pred CCCCCCchh-hHHHHhhcCCC--CC----CHHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDTVLFND-TIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~----sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|++.+|.. |++||+.++.. .. .++++.++++..++.++....|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 129 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV 129 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh
Confidence 999998875 99999976411 11 2345777888888876655433
No 151
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.4e-23 Score=206.35 Aligned_cols=134 Identities=28% Similarity=0.470 Sum_probs=108.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCC--CCCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC--EVTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~--~~~~~~ 530 (599)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++. +.+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 5899999999964 5799999999999999999999999999999999999987 4999999999997 456667
Q ss_pred HhhhceeeCCCCCCchh-hHHHHhhcCCC--C------CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRL--S------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~g-TIreNI~~g~~--~------~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|.. |++||+.++.. . ..++++.++++..++.+++.. .......+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 88899999999999975 99999987521 1 112456677777776554432 233445678876
No 152
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7.5e-23 Score=206.94 Aligned_cols=134 Identities=27% Similarity=0.445 Sum_probs=107.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~~ 530 (599)
-|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+...
T Consensus 21 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred eEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 599999999996 4679999999999999999999999999999999999865 799999999999865 34557
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC---C----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL---S----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~---~----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.++||+|++.+|.+|++||+.++.. . ..++.+.++++..++.+.+. ........+||||
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 168 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGG 168 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHH
Confidence 7889999999999999999999986521 1 11344666777776643322 2234456678886
No 153
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=8.1e-23 Score=203.69 Aligned_cols=124 Identities=26% Similarity=0.417 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC------CCCHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC------EVTLESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~------~~~~~~l 531 (599)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 478999999996 457999999999999999999999999999999999999999999999999873 2335677
Q ss_pred hhhceeeCCCCCCchh-hHHHHhhcCC---CCCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 532 RKSIGVVPQDTVLFND-TIFHNIRYGR---LSAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~g-TIreNI~~g~---~~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+.++|++|++.+|.+ |++|||.++. ...+ .+++.++++..++.+++.+.|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 139 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP 139 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh
Confidence 8899999999999975 9999997531 1122 234555666666655555444
No 154
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.7e-23 Score=205.28 Aligned_cols=134 Identities=31% Similarity=0.487 Sum_probs=109.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCCHHHHh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~~~~~lR 532 (599)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+...+|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 5899999999964 5799999999999999999999999999999999999984 699999999999988888899
Q ss_pred hhceeeCCCCCCc-hhhHHHHhhcCCC--------CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 533 KSIGVVPQDTVLF-NDTIFHNIRYGRL--------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 533 ~~i~~V~Qd~~LF-~gTIreNI~~g~~--------~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+.|+||+|++.+| +.|++||+.++.. ...++++.++++..++.+.+.. .+++. ..+||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~----~~~LSgG 150 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAP----AGKLSGG 150 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCC----cccCCHH
Confidence 9999999999755 6799999987531 0113567788888887654332 23333 4568886
No 155
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=9.2e-23 Score=196.89 Aligned_cols=120 Identities=23% Similarity=0.336 Sum_probs=102.8
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 57899999996 457999999999999999999999999999999999999999999999999998765 4567899999
Q ss_pred CCCCCCch-hhHHHHhhcCCCC--CCHHHHHHHHHHcCchHHHhc
Q 007539 539 PQDTVLFN-DTIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~--~sdeei~~A~~~a~l~d~I~~ 580 (599)
+|++.+|. .|++||+.++.+. ..++++.++++..+++++...
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 123 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL 123 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC
Confidence 99999886 6999999775321 124468888888888776543
No 156
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=7.3e-23 Score=207.61 Aligned_cols=120 Identities=28% Similarity=0.491 Sum_probs=100.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CCHHHHhhhce
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIG 536 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~--~~~~~lR~~i~ 536 (599)
|+++||+++|++.+++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 7899999999755679999999999999999999999999999999999999999999999999852 33456788999
Q ss_pred eeCCCC--CCchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHH
Q 007539 537 VVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTI 578 (599)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I 578 (599)
||+|++ .+|+.|++|||.++.. ..+ .+++.++++..++.++.
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~ 131 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE 131 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh
Confidence 999997 5788999999987531 122 24466777777776543
No 157
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.88 E-value=1.3e-22 Score=203.77 Aligned_cols=121 Identities=26% Similarity=0.429 Sum_probs=103.2
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 78999999996 45799999999999999999999999999999999999999999999999999999888888899999
Q ss_pred CCCCC-CchhhHHHHhhcCCCC----------CCHHHHHHHHHHcCchHHHhc
Q 007539 539 PQDTV-LFNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~----------~sdeei~~A~~~a~l~d~I~~ 580 (599)
+|++. .+..|++||+.++... ..++++.++++..++.+...+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 133 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR 133 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC
Confidence 99985 5678999999876310 123356777777777654433
No 158
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.9e-23 Score=204.73 Aligned_cols=134 Identities=28% Similarity=0.491 Sum_probs=108.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--CHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~--~~~~ 530 (599)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+. +...
T Consensus 6 ~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 589999999996 46799999999999999999999999999999999999763 489999999999876 4567
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--C-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.|+.++|++|++.+|+.|++|||.++.. . ..++++.++++.+++.+.+ .+...+...+||||
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G 153 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGG 153 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHH
Confidence 7889999999999999999999987632 1 1123455666666654433 23456667788886
No 159
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=203.78 Aligned_cols=135 Identities=30% Similarity=0.496 Sum_probs=109.0
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--~~~~ 529 (599)
+.|+++||+++|++ +++++|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+..
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 36899999999964 5799999999999999999999999999999999999863 69999999999875 4556
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCCC--C-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.++||+|++.+|+.|++||+.++.. . ..++++.++++.+++.+.+.. ........||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G 150 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGG 150 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHH
Confidence 78889999999999999999999987531 1 123456667777776544432 234455678876
No 160
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.4e-22 Score=207.77 Aligned_cols=118 Identities=26% Similarity=0.380 Sum_probs=98.2
Q ss_pred eEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--------
Q 007539 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-------- 525 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~-------- 525 (599)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999743 269999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhhhceeeCCCC--CCchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCch
Q 007539 526 ----------------VTLESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIH 575 (599)
Q Consensus 526 ----------------~~~~~lR~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~ 575 (599)
.+...+|+.|+||+|+| .+|..|++|||.++.. ..+ ++++.++++..++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 13467889999999986 6899999999998732 223 34466677777764
No 161
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1.1e-22 Score=202.59 Aligned_cols=121 Identities=28% Similarity=0.476 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC--CHHHHhhhce
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV--TLESLRKSIG 536 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~--~~~~lR~~i~ 536 (599)
|+++|++++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+. +...+|+.++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 68999999996 46799999999999999999999999999999999999999999999999999864 3457788999
Q ss_pred eeCCCCCCch-hhHHHHhhcCCC---CCC----HHHHHHHHHHcCchHHHhc
Q 007539 537 VVPQDTVLFN-DTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~---~~s----deei~~A~~~a~l~d~I~~ 580 (599)
|++|++.+|. .|++||+.++.. ..+ ++++.++++..++.+...+
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 132 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH 132 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc
Confidence 9999999885 699999987531 122 2344556666565544443
No 162
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.4e-22 Score=203.06 Aligned_cols=134 Identities=32% Similarity=0.554 Sum_probs=108.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~~--~~~~~ 530 (599)
.|+++||+|+|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 689999999996 457999999999999999999999999999999999999997 6999999999865 34567
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--CC-C----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|+.|++|||.++.. .. . ++.+.++++..++.+++. ........+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G 151 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGG 151 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHH
Confidence 8899999999999999999999987631 11 1 233455566666655443 2345667789886
No 163
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.6e-22 Score=197.24 Aligned_cols=120 Identities=27% Similarity=0.419 Sum_probs=102.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 579999999964 33 39999999999999999999999999999999999999999999999987654 35789999
Q ss_pred CCCCCCchh-hHHHHhhcCCC-C-----CCHHHHHHHHHHcCchHHHhcCcC
Q 007539 539 PQDTVLFND-TIFHNIRYGRL-S-----ATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~-~-----~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+|++.+|.+ |++||+.++.. . .+++++.++++..++.+...+.|.
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 127 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG 127 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 999999975 99999987532 1 235578889999999887777663
No 164
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.88 E-value=6.4e-23 Score=203.11 Aligned_cols=98 Identities=33% Similarity=0.566 Sum_probs=89.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhcee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~~ 537 (599)
|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 57899999996 4579999999999999999999999999999999999999999999999999988876654 567999
Q ss_pred eCCCCCCchh-hHHHHhhcCC
Q 007539 538 VPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~ 557 (599)
++|++.+|.+ |++||+.++.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~ 100 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred ecCCccccccCcHHHHHHHHH
Confidence 9999999987 9999998753
No 165
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.9e-22 Score=205.42 Aligned_cols=135 Identities=32% Similarity=0.533 Sum_probs=110.5
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~ 529 (599)
..|+++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+..
T Consensus 38 ~~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 38 TVIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred ceEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 36999999999964 579999999999999999999999999999999999997 689999999999865 3456
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCC-----CCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGR-----LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~-----~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.++||+|++.+|..|++||+.++. +...++++.++++..++.+.+.. .+.+....||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgG 184 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGG 184 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHH
Confidence 7888999999999999999999998752 11124567788888777544432 234455678886
No 166
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5e-23 Score=208.15 Aligned_cols=123 Identities=31% Similarity=0.432 Sum_probs=102.5
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH----hhhc
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSI 535 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l----R~~i 535 (599)
.++||+++|. +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4567777774 4569999999999999999999999999999999999999999999999999988776553 4579
Q ss_pred eeeCCCCCCch-hhHHHHhhcCCC------CCCHHHHHHHHHHcCchHHHhcCcC
Q 007539 536 GVVPQDTVLFN-DTIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~------~~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+||+|++.+|. .|++||+.++.. ...++++.++++..++.+++...|.
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 159 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc
Confidence 99999999984 699999987421 1123567788888888887777664
No 167
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8e-23 Score=204.85 Aligned_cols=134 Identities=31% Similarity=0.487 Sum_probs=106.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~~ 530 (599)
.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 589999999996 4679999999999999999999999999999999999997 479999999999864 34567
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--C-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|+.|++||+.++.. . ..++++.++++..++++.. +. .......+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~----~~~~~~~~LS~G 151 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KD----NLDRNAQAFSGG 151 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HH----HhccChhhCCHH
Confidence 7889999999999999999999987531 1 1224556677776764321 11 123455678886
No 168
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.88 E-value=1.9e-22 Score=200.25 Aligned_cols=128 Identities=28% Similarity=0.494 Sum_probs=102.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++|+
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVV 79 (236)
T ss_pred EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEe
Confidence 68999999996 467999999999999999999999999999999999999999999999999998876544 4589999
Q ss_pred CCCCCC-chhhHHHHhhcCCC--CCCH----HHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 539 PQDTVL-FNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 539 ~Qd~~L-F~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|++.+ ++.|++||+.++.. ..+. +++.+.++..+ ++........+||||
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G 136 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLG-----------LAERADDKVRELNGG 136 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhcCChhhCCHH
Confidence 999987 57899999987531 1222 23334444433 333444555678886
No 169
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=204.20 Aligned_cols=123 Identities=32% Similarity=0.481 Sum_probs=104.5
Q ss_pred eEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
.|+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999753 46999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eeCCCCC--CchhhHHHHhhcCCCC--CC----HHHHHHHHHHcCchHHHhc
Q 007539 537 VVPQDTV--LFNDTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 537 ~V~Qd~~--LF~gTIreNI~~g~~~--~s----deei~~A~~~a~l~d~I~~ 580 (599)
||+|++. ++..|+++|+.++... .+ ++++.++++..++.++...
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 138 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY 138 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC
Confidence 9999984 5567899999876321 22 2456677777777665443
No 170
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=203.35 Aligned_cols=123 Identities=24% Similarity=0.399 Sum_probs=106.2
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
..|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 6 ~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 3799999999996 457999999999999999999999999999999999999999999999999999888888888999
Q ss_pred eeCCCCCCch-hhHHHHhhcCC-C---------CCCHHHHHHHHHHcCchHHHhc
Q 007539 537 VVPQDTVLFN-DTIFHNIRYGR-L---------SATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~-~---------~~sdeei~~A~~~a~l~d~I~~ 580 (599)
||+|++.+|. .|++||+.++. + +..++++.++++..++.++..+
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC
Confidence 9999998875 69999998752 1 1123457788888888765444
No 171
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=204.14 Aligned_cols=134 Identities=28% Similarity=0.482 Sum_probs=107.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~--p---~~G~I~idG~di~~--~~~~~ 530 (599)
-|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+...
T Consensus 12 ~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 12 VYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred eEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 599999999996 4579999999999999999999999999999999999997 3 59999999999864 44567
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCCC---CCH----HHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS---ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~~---~sd----eei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|..|++||+.++... .++ +++.++++..++.+++. +.+.....+||||
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~G 159 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGG 159 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHH
Confidence 88899999999999999999999875311 122 33555677777765543 2234456678886
No 172
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=1.4e-22 Score=211.56 Aligned_cols=122 Identities=30% Similarity=0.526 Sum_probs=104.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.|+|
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 4899999999964 579999999999999999999999999999999999999999999999999987654 4578999
Q ss_pred eCCCCCCch-hhHHHHhhcCCC------CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTVLFN-DTIFHNIRYGRL------SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~------~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++.+|. .|++|||.++.. ..+ ++++.++++..++.++..+.|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 134 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh
Confidence 999999996 599999998732 112 346777888888877665554
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=8.9e-23 Score=201.97 Aligned_cols=121 Identities=32% Similarity=0.477 Sum_probs=104.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++|+|++ +++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEE
Confidence 578999999964 579999999999999999999999999999999999999999999999999987664 36789999
Q ss_pred CCCCCCchh-hHHHHhhcCC------CCCCHHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDTVLFND-TIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~------~~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|++.+|.+ |++||+.++. +...++++.++++..++++++...|
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 128 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP 128 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 999999975 9999998652 1122456778888889888877766
No 174
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=6.1e-23 Score=202.95 Aligned_cols=98 Identities=36% Similarity=0.609 Sum_probs=89.8
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhhhcee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~-lR~~i~~ 537 (599)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 57899999996 457999999999999999999999999999999999999999999999999998887655 4678999
Q ss_pred eCCCCCCchh-hHHHHhhcCC
Q 007539 538 VPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~ 557 (599)
++|++.+|.. |++||+.++.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~ 100 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGL 100 (230)
T ss_pred eccCCcccCCCcHHHHHHHHH
Confidence 9999999986 9999998763
No 175
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.9e-22 Score=195.59 Aligned_cols=120 Identities=20% Similarity=0.325 Sum_probs=103.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ..++++++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~ 79 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEe
Confidence 689999999964 57999999999999999999999999999999999999999999999999987654 4567889999
Q ss_pred CCCCCCch-hhHHHHhhcCCCC---CCHHHHHHHHHHcCchHHHhc
Q 007539 539 PQDTVLFN-DTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~---~sdeei~~A~~~a~l~d~I~~ 580 (599)
+|++.++. .|++||+.++.+. .+++++.++++..++.++...
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 125 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV 125 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC
Confidence 99998886 6999999876421 345678889999888765543
No 176
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.9e-23 Score=199.69 Aligned_cols=115 Identities=22% Similarity=0.428 Sum_probs=95.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|+ ++++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 57899999996 4579999999999999999999999999999999999999999999999988753 567889999
Q ss_pred CCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHH
Q 007539 539 PQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTI 578 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I 578 (599)
+|++.+|.+ |++||+.++.. ..+ ++++.++++..++.+..
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 122 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA 122 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH
Confidence 999999875 99999977421 111 34455666666665443
No 177
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.88 E-value=2.4e-22 Score=210.88 Aligned_cols=123 Identities=27% Similarity=0.472 Sum_probs=107.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|+|
T Consensus 14 ~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT 90 (375)
T ss_pred eEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 699999999996 45799999999999999999999999999999999999999999999999999887654 468999
Q ss_pred eCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+|++.||. .|++|||.|+.. ..+ ++++.++++..++.++..+.|.
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~ 143 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH 143 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 999999995 599999998732 122 3467788888899888887773
No 178
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.88 E-value=2.2e-22 Score=196.51 Aligned_cols=120 Identities=31% Similarity=0.508 Sum_probs=102.5
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
++++||+++|+. .++|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+ .+++.++||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987654 467889999
Q ss_pred CCCCCCchh-hHHHHhhcCC-CC-----CCHHHHHHHHHHcCchHHHhcCcC
Q 007539 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~-~~-----~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+|++.+|.+ |++||+.++. +. ..++++.++++..++.+...+.|.
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 127 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE 127 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc
Confidence 999999975 9999997641 11 234567889999999887777764
No 179
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.4e-22 Score=203.88 Aligned_cols=134 Identities=31% Similarity=0.503 Sum_probs=109.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--~~~~~ 530 (599)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+...
T Consensus 7 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 699999999996 35799999999999999999999999999999999999985 48999999999864 45567
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCC------CCCC-HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGR------LSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~------~~~s-deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.++||+|++.+|+.|++||+.++. ++.. ++.+.++++.+++.+++..+ .......||||
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G 154 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGG 154 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHH
Confidence 888999999999999999999998752 1111 24466778888887655432 23455678876
No 180
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.5e-22 Score=199.97 Aligned_cols=134 Identities=24% Similarity=0.470 Sum_probs=104.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (599)
.|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .|+.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 488999999996 467999999999999999999999999999999999999999999999999998887644 577899
Q ss_pred eeCCCCCCchh-hHHHHhhcCCC---CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~---~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||+|++.+|.+ |++||+.++.. ..+.++..+ .+++.++.+ |++.........||||
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G 141 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGG 141 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHH
Confidence 99999999885 99999987531 122222111 112334433 3444445556778886
No 181
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=9.1e-23 Score=212.65 Aligned_cols=114 Identities=31% Similarity=0.463 Sum_probs=99.3
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH----hhhceeeCCCCCCc
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLF 545 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l----R~~i~~V~Qd~~LF 545 (599)
+++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||.++.+++..++ |+.|+||+|++.+|
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35679999999999999999999999999999999999999999999999999999998887 78999999999999
Q ss_pred h-hhHHHHhhcCCCC--C----CHHHHHHHHHHcCchHHHhcCcC
Q 007539 546 N-DTIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 546 ~-gTIreNI~~g~~~--~----sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
. .|++|||.++.+. . .++++.++++.++++++..+.|.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~ 128 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh
Confidence 7 5999999886321 1 23567788888888777666554
No 182
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=203.41 Aligned_cols=136 Identities=29% Similarity=0.449 Sum_probs=110.5
Q ss_pred CceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCC----CC
Q 007539 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC----EV 526 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~----~~ 526 (599)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++. ..
T Consensus 14 ~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 457999999999963 5799999999999999999999999999999999999985 7999999998874 33
Q ss_pred CHHHHhhhceeeCCCCCCchhhHHHHhhcCCC--C-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 527 ~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+...+|+.++|++|++.+|.+|++|||.++.. . ..++++.++++.+++.+.+. +.+......||||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G 165 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLSGG 165 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCCHH
Confidence 45678889999999999999999999987521 1 12456777777777654333 3345556778876
No 183
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.88 E-value=1.8e-22 Score=190.53 Aligned_cols=95 Identities=41% Similarity=0.702 Sum_probs=90.3
Q ss_pred EEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
|+++|++++|++. .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.+.+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 5789999999743 479999999999999999999999999999999999999999999999999999998899999999
Q ss_pred eCCCCCCchhhHHHHh
Q 007539 538 VPQDTVLFNDTIFHNI 553 (599)
Q Consensus 538 V~Qd~~LF~gTIreNI 553 (599)
|+|++.+|+.|++||+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999998
No 184
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.88 E-value=1.6e-22 Score=204.46 Aligned_cols=120 Identities=30% Similarity=0.492 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH---HHhhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~---~lR~~ 534 (599)
-|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+.
T Consensus 7 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 589999999995 45799999999999999999999999999999999999999999999999999877653 35778
Q ss_pred ceeeCCCCCCchh-hHHHHhhcCCC---CCCH----HHHHHHHHHcCchHHH
Q 007539 535 IGVVPQDTVLFND-TIFHNIRYGRL---SATE----EEVYDAARRAAIHDTI 578 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~---~~sd----eei~~A~~~a~l~d~I 578 (599)
++||+|++.+|.+ |++||+.++.. ..+. +++.++++..++.+..
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 137 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA 137 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh
Confidence 9999999999986 99999986421 1222 3455566666665443
No 185
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.8e-22 Score=204.11 Aligned_cols=99 Identities=32% Similarity=0.581 Sum_probs=90.0
Q ss_pred eEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHH
Q 007539 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~----~~~ 529 (599)
.|+++||+|+|++. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 48899999999742 4699999999999999999999999999999999999999999999999998764 356
Q ss_pred HHhhhceeeCCCC--CCchhhHHHHhhcC
Q 007539 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYG 556 (599)
Q Consensus 530 ~lR~~i~~V~Qd~--~LF~gTIreNI~~g 556 (599)
.+|+.|+||+|++ .+|+.|++|||.++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~ 110 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFG 110 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHH
Confidence 7888999999998 68899999999875
No 186
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.88 E-value=1.2e-22 Score=197.40 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=98.1
Q ss_pred EEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH----HHHhhhce
Q 007539 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKSIG 536 (599)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~----~~lR~~i~ 536 (599)
++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++. ...++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 478999996 4579999999999999999999999999999999999999999999999999765542 24577899
Q ss_pred eeCCCCCCch-hhHHHHhhcCCC------CCCHHHHHHHHHHcCchHHHhc
Q 007539 537 VVPQDTVLFN-DTIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~------~~sdeei~~A~~~a~l~d~I~~ 580 (599)
||+|++.+|. .|++||+.++.. ...++++.++++..++.++..+
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 130 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ 130 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC
Confidence 9999999997 699999987421 1124556777887777655433
No 187
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.1e-22 Score=211.85 Aligned_cols=122 Identities=26% Similarity=0.392 Sum_probs=104.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+|
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 489999999996 4579999999999999999999999999999999999999999999999999987765 3568999
Q ss_pred eCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++.+|. .|++|||.++.. ..+ ++++.++++..++.++..+.|
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~ 131 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP 131 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh
Confidence 999999996 599999998632 122 345777888888877666555
No 188
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=202.21 Aligned_cols=134 Identities=34% Similarity=0.567 Sum_probs=109.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~~ 530 (599)
.|+++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++.+ .+...
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 488999999996 4679999999999999999999999999999999999875 489999999999875 34667
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--CC-C----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||||++.+|+.|++||+.++.. .. + ++++.++++.+++.+++..+ +.+.+..||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G 150 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGG 150 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHH
Confidence 8899999999999999999999987521 11 1 24466778888887766532 33456678876
No 189
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.88 E-value=4.2e-22 Score=196.71 Aligned_cols=98 Identities=38% Similarity=0.509 Sum_probs=88.2
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHh
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLR 532 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~---~~lR 532 (599)
|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999643 279999999999999999999999999999999999999999999999999988774 5778
Q ss_pred hhceeeCCCC--CCc-hhhHHHHhhcC
Q 007539 533 KSIGVVPQDT--VLF-NDTIFHNIRYG 556 (599)
Q Consensus 533 ~~i~~V~Qd~--~LF-~gTIreNI~~g 556 (599)
+.++|++|++ .++ ..|++||+.++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~ 108 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEP 108 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHH
Confidence 8999999999 344 57999999754
No 190
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.4e-22 Score=202.97 Aligned_cols=134 Identities=29% Similarity=0.483 Sum_probs=108.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--CHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~--~~~~ 530 (599)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +...
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 489999999996 46799999999999999999999999999999999999984 899999999998753 3456
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC---C----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL---S----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~---~----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.++|++|++.+|..|++||+.++.. . ..++++.++++..++++.+.. .......+||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 150 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGG 150 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHH
Confidence 7889999999999999999999987521 1 123446677777777654422 244556778886
No 191
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.1e-22 Score=201.95 Aligned_cols=134 Identities=31% Similarity=0.461 Sum_probs=106.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CC---CCceEEECCEeCCCC--CHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DT---HSGSIRIDGQDICEV--TLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly--~p---~~G~I~idG~di~~~--~~~~ 530 (599)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|++ .| ++|+|.+||+++... +...
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 589999999996 457999999999999999999999999999999999995 46 499999999998643 3457
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--C-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|+.|++||+.++.. . ..++++.++++.+++.+.+. +.......+||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGG 152 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHH
Confidence 7889999999999999999999986521 1 12344556677777654433 2334556678886
No 192
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.4e-22 Score=201.48 Aligned_cols=135 Identities=27% Similarity=0.466 Sum_probs=108.2
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCCC--CHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICEV--TLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~--p---~~G~I~idG~di~~~--~~~ 529 (599)
+.|+++|++++|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.+||.++... +..
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4799999999996 4679999999999999999999999999999999999986 4 689999999998653 445
Q ss_pred HHhhhceeeCCCCCCch-hhHHHHhhcCC-----CCC--CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGR-----LSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~-gTIreNI~~g~-----~~~--sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.++||+|++.+|. .|++||+.++. ++. .++++.++++..++.+++..+ ......+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 77889999999999998 59999998642 111 124566777777776655322 23345678876
No 193
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.87 E-value=1.4e-22 Score=192.19 Aligned_cols=94 Identities=34% Similarity=0.631 Sum_probs=87.9
Q ss_pred EEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
|+++|++|+|++. +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 5789999999754 4799999999999999999999999999999999999999999999999998776 6678889999
Q ss_pred eCCCCCCchhhHHHHh
Q 007539 538 VPQDTVLFNDTIFHNI 553 (599)
Q Consensus 538 V~Qd~~LF~gTIreNI 553 (599)
|+|++.+|+.|++||+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999998
No 194
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.3e-22 Score=203.64 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhhhce
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSIG 536 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~~~~~~lR~~i~ 536 (599)
|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.|+
T Consensus 2 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 78999999996 467999999999999999999999999999999999999999999999999985 344567888999
Q ss_pred eeCCCCC--CchhhHHHHhhcCC--CCCCH----HHHHHHHHHcCchHHH
Q 007539 537 VVPQDTV--LFNDTIFHNIRYGR--LSATE----EEVYDAARRAAIHDTI 578 (599)
Q Consensus 537 ~V~Qd~~--LF~gTIreNI~~g~--~~~sd----eei~~A~~~a~l~d~I 578 (599)
||+|++. +|..|+.||+.++. ...+. +++.++++..++.++.
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 130 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR 130 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh
Confidence 9999985 67789999998742 11222 3455667777776543
No 195
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.9e-22 Score=202.12 Aligned_cols=134 Identities=30% Similarity=0.480 Sum_probs=109.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCC--CCCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDIC--EVTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~--~~~~~~ 530 (599)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.+||.++. +.+...
T Consensus 10 ~l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 5999999999963 579999999999999999999999999999999999986 47999999999985 345667
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCCC-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|+.|++|||.++... ..++++.++++.+++.+++.. .......+||||
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 155 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGG 155 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHH
Confidence 88899999999999999999999876321 123456667788887665542 234556678886
No 196
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.9e-22 Score=201.91 Aligned_cols=134 Identities=34% Similarity=0.539 Sum_probs=107.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC---CCC--CCceEEECCEeCCCC--CHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS---FDT--HSGSIRIDGQDICEV--TLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl---y~p--~~G~I~idG~di~~~--~~~~ 530 (599)
.|+++||++.|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+ ++| ++|+|.+||.++.+. +...
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5899999999964 5799999999999999999999999999999999997 454 589999999998764 3467
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--C-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||||++.+|..|++||+.++.. . ..++++.++++..++.+++. +...+....||||
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 150 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGG 150 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHH
Confidence 7889999999999999999999987521 1 12345667777777655443 2334556778886
No 197
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=205.25 Aligned_cols=134 Identities=36% Similarity=0.531 Sum_probs=109.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCC--CHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEV--TLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~~--~~~~ 530 (599)
.|+++||+++|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++... +...
T Consensus 45 ~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 45 KLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred eEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 6999999999964 579999999999999999999999999999999999986 6899999999998653 4567
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC-------------------CCCHHHHHHHHHHcCchHHHhcCcCcccccccc
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL-------------------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~-------------------~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE 591 (599)
+|+.++||+|++.+|+.|++||+.++.. +..++++.++++.+++.+. +++.+.+
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~ 196 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDRLDD 196 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHHhcC
Confidence 8889999999999999999999987521 0113446666666665433 3445566
Q ss_pred CcccCCCC
Q 007539 592 RGLKIEGK 599 (599)
Q Consensus 592 ~G~~LSG~ 599 (599)
...+||||
T Consensus 197 ~~~~LSgG 204 (305)
T PRK14264 197 NALGLSGG 204 (305)
T ss_pred ccccCCHH
Confidence 77889986
No 198
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.7e-22 Score=203.36 Aligned_cols=134 Identities=24% Similarity=0.397 Sum_probs=107.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCC-HHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVT-LESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~~-~~~l 531 (599)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ...+
T Consensus 21 ~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 21 AMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 689999999996 46799999999999999999999999999999999999986 6999999999998764 4577
Q ss_pred hhhceeeCCCCCCchhhHHHHhhcCCC---CCCHHHH----HHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL---SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~gTIreNI~~g~~---~~sdeei----~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+.++||+|++.+|+.|++|||.++.. ..++++. .++++..++.++ +++.+.....+||||
T Consensus 100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgG 167 (276)
T PRK14271 100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGG 167 (276)
T ss_pred hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHH
Confidence 889999999999999999999987631 1344443 233444444332 233455667789886
No 199
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.3e-22 Score=201.25 Aligned_cols=134 Identities=31% Similarity=0.521 Sum_probs=108.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCC-CCCHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC-EVTLESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~-~~~~~~l 531 (599)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++. ..+...+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 589999999996 46799999999999999999999999999999999999986 5999999999986 4566788
Q ss_pred hhhceeeCCCCCCchhhHHHHhhcCCC--CCC-----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--SAT-----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~gTIreNI~~g~~--~~s-----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+.++||+|++.+|..|++||+.++.. ... ++++.++++.+++++.+. +.+......||||
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G 149 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGG 149 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHH
Confidence 999999999999999999999987531 111 234556677777665442 2334445678876
No 200
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.87 E-value=9.9e-23 Score=200.85 Aligned_cols=95 Identities=32% Similarity=0.486 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCCHHHHh
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~---p~~G~I~idG~di~~~~~~~lR 532 (599)
++|+||+|+|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999864 689999999999999999999999999999999999999 99999999999875 35678
Q ss_pred hhceeeCCCCCCchh-hHHHHhhcC
Q 007539 533 KSIGVVPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 533 ~~i~~V~Qd~~LF~g-TIreNI~~g 556 (599)
+.++|++|++.+|.+ |++||+.++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHH
Confidence 899999999999987 999999875
No 201
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=2.8e-22 Score=199.76 Aligned_cols=99 Identities=24% Similarity=0.451 Sum_probs=90.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (599)
-|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 3789999999964 579999999999999999999999999999999999999999999999999988876654 45799
Q ss_pred eeCCCCCCchh-hHHHHhhcCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~ 557 (599)
|++|++.+|.+ |++||+.++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~ 102 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELAL 102 (242)
T ss_pred EeccccccCCCCCHHHHHHHhh
Confidence 99999999986 9999998753
No 202
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.87 E-value=2.1e-22 Score=210.58 Aligned_cols=124 Identities=27% Similarity=0.499 Sum_probs=106.6
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC--ceEEECCEeCCCCCHHHHhhh
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~--G~I~idG~di~~~~~~~lR~~ 534 (599)
+.|+++||+++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .++.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRG 80 (362)
T ss_pred eEEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCC
Confidence 5799999999996 3579999999999999999999999999999999999999999 999999999987665 3578
Q ss_pred ceeeCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 535 IGVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+.|.
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~ 136 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA 136 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh
Confidence 9999999999965 99999998631 122 3457778888888887777664
No 203
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.8e-22 Score=199.15 Aligned_cols=99 Identities=30% Similarity=0.537 Sum_probs=91.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (599)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++... +++.++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 489999999996 467999999999999999999999999999999999999999999999999998887654 677899
Q ss_pred eeCCCCCCchh-hHHHHhhcCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~ 557 (599)
||+|++.+|.+ |++||+.++.
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhh
Confidence 99999999985 9999998864
No 204
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.2e-22 Score=203.49 Aligned_cols=134 Identities=26% Similarity=0.427 Sum_probs=107.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCCC--HHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEVT--LES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~~~--~~~ 530 (599)
+-+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...
T Consensus 5 ~~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 5 HASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 357899999996 4679999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--C------CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~------~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|.+|++||+.++.. + ..++++.++++..++.+++. +.+...+.+||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGG 153 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHH
Confidence 7889999999999999999999987521 1 12345667778777765432 2334456678876
No 205
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.1e-22 Score=202.57 Aligned_cols=134 Identities=28% Similarity=0.457 Sum_probs=106.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--~~~~~ 530 (599)
-|+++||+|+|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+...
T Consensus 24 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 24 VFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 699999999996 4579999999999999999999999999999999999997 699999999999853 45667
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--CCCH-----HHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATE-----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~sd-----eei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.++|++|++.+|..|++||+.++.. +.++ +.+.++++..++.+. +.......+..||||
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------l~~~~~~~~~~LSgG 171 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE-------LKDRLHDNAYGLSGG 171 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------HHHHHhcCcccCCHH
Confidence 8889999999999999999999987521 1222 223444554444322 223345566788886
No 206
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.9e-22 Score=200.35 Aligned_cols=98 Identities=20% Similarity=0.349 Sum_probs=90.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (599)
-|+++||+++|+ +.++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 589999999996 4679999999999999999999999999999999999999999999999999998876655 44699
Q ss_pred eeCCCCCCchh-hHHHHhhcC
Q 007539 537 VVPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g 556 (599)
||+|++.+|.+ |++|||.++
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred EeccCcccCCCCcHHHHHHHh
Confidence 99999999986 999999976
No 207
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.6e-22 Score=196.89 Aligned_cols=120 Identities=30% Similarity=0.492 Sum_probs=102.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++ .+ .|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEE
Confidence 789999999963 33 39999999999999999999999999999999999999999999999987654 25689999
Q ss_pred CCCCCCchh-hHHHHhhcCC-CC-----CCHHHHHHHHHHcCchHHHhcCcC
Q 007539 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~-~~-----~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+|++.+|.+ |++|||.++. +. ..++++.++++..++.+.+.+.|.
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 128 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG 128 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc
Confidence 999999985 9999998752 21 224568889999999888877764
No 208
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.87 E-value=3.5e-22 Score=198.36 Aligned_cols=121 Identities=33% Similarity=0.479 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|++ +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEE
Confidence 578999999974 579999999999999999999999999999999999999999999999999987653 46789999
Q ss_pred CCCCCCchh-hHHHHhhcCCCC--C----CHHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDTVLFND-TIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~--~----sdeei~~A~~~a~l~d~I~~Lp 582 (599)
||++.+|.+ |++||+.++.+. . .++++.++++..++.++..+.+
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 128 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP 128 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh
Confidence 999999975 999999876421 1 2345667777777766555433
No 209
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=4.3e-22 Score=193.51 Aligned_cols=117 Identities=21% Similarity=0.372 Sum_probs=100.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. . .+|+.++|
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 3789999999964 579999999999999999999999999999999999999999999999998753 2 27889999
Q ss_pred eCCCCCCc-hhhHHHHhhcCCC--CCCHHHHHHHHHHcCchHHH
Q 007539 538 VPQDTVLF-NDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTI 578 (599)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~--~~sdeei~~A~~~a~l~d~I 578 (599)
++|++.++ +.|++||+.+... ...++++.++++..++.++.
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~ 121 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA 121 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH
Confidence 99988775 6799999976432 23456788899999987654
No 210
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.5e-22 Score=200.20 Aligned_cols=134 Identities=31% Similarity=0.488 Sum_probs=108.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--CHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~--~~~~ 530 (599)
.|+++||+++|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++... +...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 689999999996 46799999999999999999999999999999999999986 799999999998653 3456
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--CC-C----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|..|++||+.++.. .. + ++++.++++.+++.+.+.. ........||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 151 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGG 151 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHH
Confidence 7889999999999999999999987531 11 1 2446677777777544432 233445678875
No 211
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=4.9e-22 Score=200.74 Aligned_cols=129 Identities=24% Similarity=0.408 Sum_probs=106.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--------CceEEECCEeCCCCCHHH
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--------SGSIRIDGQDICEVTLES 530 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~--------~G~I~idG~di~~~~~~~ 530 (599)
|+++|++++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+.+...
T Consensus 2 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 78999999995 457999999999999999999999999999999999999998 999999999999888888
Q ss_pred HhhhceeeCCCCC-CchhhHHHHhhcCCC-C------C---CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTV-LFNDTIFHNIRYGRL-S------A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~-LF~gTIreNI~~g~~-~------~---sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.++||+|++. +|..|++||+.++.. . . .++.+.++++..++.+ .+......||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 149 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLSGG 149 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHH
Confidence 8889999999986 678999999987531 1 1 1234555666665543 344455678876
No 212
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.87 E-value=3.8e-22 Score=200.60 Aligned_cols=121 Identities=31% Similarity=0.446 Sum_probs=100.4
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----------
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV---------- 526 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~---------- 526 (599)
+.|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4799999999996 46799999999999999999999999999999999999999999999999998642
Q ss_pred ---CHHHHhhhceeeCCCCCCchh-hHHHHhhcCC---CCCC----HHHHHHHHHHcCchHHH
Q 007539 527 ---TLESLRKSIGVVPQDTVLFND-TIFHNIRYGR---LSAT----EEEVYDAARRAAIHDTI 578 (599)
Q Consensus 527 ---~~~~lR~~i~~V~Qd~~LF~g-TIreNI~~g~---~~~s----deei~~A~~~a~l~d~I 578 (599)
....+|+.++||||++.+|.. |++||+.++. .... ++++.++++..++.+..
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 145 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA 145 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh
Confidence 135678899999999999974 9999997642 0122 34566677777765543
No 213
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=6.6e-22 Score=198.11 Aligned_cols=98 Identities=34% Similarity=0.535 Sum_probs=88.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--------HH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--------LE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~--------~~ 529 (599)
-|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||+++...+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 389999999996 457999999999999999999999999999999999999999999999999987542 35
Q ss_pred HHhhhceeeCCCCCCch-hhHHHHhhcC
Q 007539 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYG 556 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~-gTIreNI~~g 556 (599)
.+|+.++||+|++.+|. .|++||+.++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 67889999999999885 6999999764
No 214
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.3e-22 Score=209.28 Aligned_cols=123 Identities=27% Similarity=0.406 Sum_probs=105.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||.++.+++. .++.|+|
T Consensus 19 ~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 95 (377)
T PRK11607 19 LLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM 95 (377)
T ss_pred eEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 599999999996 3579999999999999999999999999999999999999999999999999987664 5678999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
|+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++.++.|.
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~ 148 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH 148 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 9999999965 99999998732 122 3456777888888776666553
No 215
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.5e-22 Score=200.94 Aligned_cols=134 Identities=34% Similarity=0.539 Sum_probs=107.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--CHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~--~~~~ 530 (599)
.|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +...
T Consensus 12 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 699999999996 46799999999999999999999999999999999999985 799999999998653 3456
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC--CCCH----HHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|..|++||+.++.. ..+. +++.++++.+++.+++. +.++ .....||||
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG 158 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLK----SPALSLSGG 158 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CChhhCCHH
Confidence 7889999999999999999999987521 1222 34566777777654321 2223 345678886
No 216
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.5e-22 Score=202.23 Aligned_cols=101 Identities=33% Similarity=0.504 Sum_probs=90.1
Q ss_pred ceEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----C-C
Q 007539 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----V-T 527 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----~-~ 527 (599)
+.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+ . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 579999999999743 259999999999999999999999999999999999999999999999999853 2 4
Q ss_pred HHHHhhhceeeCCCC--CCchhhHHHHhhcCC
Q 007539 528 LESLRKSIGVVPQDT--VLFNDTIFHNIRYGR 557 (599)
Q Consensus 528 ~~~lR~~i~~V~Qd~--~LF~gTIreNI~~g~ 557 (599)
...+|+.|+||+|++ .+|..|++|||.++.
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 116 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGP 116 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHH
Confidence 567888999999998 578889999998763
No 217
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.87 E-value=3.4e-22 Score=191.65 Aligned_cols=115 Identities=28% Similarity=0.436 Sum_probs=93.4
Q ss_pred ecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CCHHHHhhhceeeCCCC--C
Q 007539 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIGVVPQDT--V 543 (599)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~--~~~~~lR~~i~~V~Qd~--~ 543 (599)
|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+++.++||+|++ .
T Consensus 1 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CCCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3345679999999999999999999999999999999999999999999999999852 23456788999999998 5
Q ss_pred CchhhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 544 LFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 544 LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+|..|++||+.++.. ..+ ++++.++++..++.++....|
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 125 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT 125 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh
Confidence 788999999987521 123 245677777778776655543
No 218
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.9e-22 Score=202.15 Aligned_cols=118 Identities=34% Similarity=0.563 Sum_probs=97.4
Q ss_pred eEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHH
Q 007539 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~----~~~ 529 (599)
.|+++||+++|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 47899999999732 4699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhhhceeeCCCC--CCchhhHHHHhhcCCC--CCCH----HHHHHHHHHcCch
Q 007539 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIH 575 (599)
Q Consensus 530 ~lR~~i~~V~Qd~--~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~ 575 (599)
..++.|+||+|++ .+|..|++|||.++.. ..+. +.+.++++..++.
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 135 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLS 135 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 6788999999998 5888999999987531 2222 2345556655654
No 219
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.6e-22 Score=200.35 Aligned_cols=135 Identities=33% Similarity=0.530 Sum_probs=110.1
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CCHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~~--~~~~ 529 (599)
+.|+++||+|+|++ .++|+|+||+|++|+.+||+|+||||||||+++|+|+++|+ +|+|.+||.++.. .+..
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 36999999999963 47999999999999999999999999999999999999985 8999999999853 3556
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCC------CCCC-HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGR------LSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~------~~~s-deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.++|++|++.+|..|++||+.++. +... ++++.++++..++.+++.. ........||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG 154 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGG 154 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHH
Confidence 7888999999999999999999998652 1111 3446777888887665543 234456678886
No 220
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.2e-22 Score=188.83 Aligned_cols=97 Identities=43% Similarity=0.670 Sum_probs=89.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--HHHHhhhce
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--LESLRKSIG 536 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~--~~~lR~~i~ 536 (599)
|+++|++++|+ ++++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++ ...+++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 57899999996 457999999999999999999999999999999999999999999999999998876 567888999
Q ss_pred eeCCCCCCch-hhHHHHhhcC
Q 007539 537 VVPQDTVLFN-DTIFHNIRYG 556 (599)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g 556 (599)
|++|++.+|. .|++||+.+.
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EEecCCccCCCCCHHHheeec
Confidence 9999999886 5999999764
No 221
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.87 E-value=6.9e-22 Score=199.52 Aligned_cols=132 Identities=23% Similarity=0.358 Sum_probs=103.4
Q ss_pred eEEEEEEEEeecC--------CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH
Q 007539 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~ 529 (599)
-|+++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 3789999999963 35799999999999999999999999999999999999999999999999999887754
Q ss_pred H---HhhhceeeCCCCC--Cc-hhhHHHHhhcCC-------CCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccC
Q 007539 530 S---LRKSIGVVPQDTV--LF-NDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKI 596 (599)
Q Consensus 530 ~---lR~~i~~V~Qd~~--LF-~gTIreNI~~g~-------~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~L 596 (599)
. +|+.|+||+|++. ++ ..|++|||.++. ++..++++.++++..++.+. ........|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhC
Confidence 3 6788999999983 44 479999996531 11123456666666665321 123345568
Q ss_pred CCC
Q 007539 597 EGK 599 (599)
Q Consensus 597 SG~ 599 (599)
|||
T Consensus 152 SgG 154 (265)
T TIGR02769 152 SGG 154 (265)
T ss_pred CHH
Confidence 875
No 222
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.7e-22 Score=198.77 Aligned_cols=116 Identities=22% Similarity=0.367 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++... +..++||
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVV 75 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEE
Confidence 789999999964 6799999999999999999999999999999999999999999999999998653 2468999
Q ss_pred CCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhc
Q 007539 539 PQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~ 580 (599)
+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+...+
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 124 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR 124 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC
Confidence 99999887 699999987521 122 2446667777777654443
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.9e-22 Score=199.93 Aligned_cols=134 Identities=26% Similarity=0.393 Sum_probs=106.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--~~~~~ 530 (599)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+...
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 5899999999964 5799999999999999999999999999999999999974 69999999999853 44567
Q ss_pred HhhhceeeCCCCCCch-hhHHHHhhcCCC---C----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGRL---S----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~-gTIreNI~~g~~---~----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|. .|++||+.++.. . ..++++.++++..++.+++. ........+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGG 152 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHH
Confidence 8889999999999997 599999986421 1 11244566777777754432 2233445678876
No 224
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.4e-22 Score=209.88 Aligned_cols=111 Identities=32% Similarity=0.506 Sum_probs=95.0
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH----hhhceeeCCCCCCch-h
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLFN-D 547 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l----R~~i~~V~Qd~~LF~-g 547 (599)
++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 47999999999999999999999999999999999999999999999999998887654 357999999999996 5
Q ss_pred hHHHHhhcCCC--CC----CHHHHHHHHHHcCchHHHhcCcC
Q 007539 548 TIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 548 TIreNI~~g~~--~~----sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
|++|||.++.. .. .++++.++++..++.++..+.|.
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc
Confidence 99999987521 11 23567788888898887776663
No 225
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.4e-22 Score=199.29 Aligned_cols=135 Identities=30% Similarity=0.460 Sum_probs=109.3
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--~~~~ 529 (599)
..|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+..
T Consensus 19 ~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 19 SVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred ceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 37999999999964 5799999999999999999999999999999999999864 69999999999864 3445
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCCCC-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.|+||+|++.+|+.|+.|||.++... ..++++.++++.+++.+++.. ........||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 165 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGG 165 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHH
Confidence 678899999999999999999999876311 124456777888887655532 233445678876
No 226
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.9e-22 Score=198.67 Aligned_cols=134 Identities=32% Similarity=0.477 Sum_probs=105.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~--p---~~G~I~idG~di~~--~~~~~ 530 (599)
-|+++||+++|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+...
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 589999999997 4679999999999999999999999999999999999975 5 59999999999864 34556
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCC--CCC-----CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGR--LSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~--~~~-----sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.++||+|++.+|..|++||+.++. ... .++++.++++.+++.+.+. ........+||||
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 152 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGG 152 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHH
Confidence 788999999999999999999998752 111 1344566667766654332 2234445678876
No 227
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.86 E-value=9.3e-22 Score=202.11 Aligned_cols=130 Identities=29% Similarity=0.408 Sum_probs=104.3
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
..|+++||+++|+ +..+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.|+...+ ...|+.||
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 3699999999996 467999999999999999999999999999999999999999999999999997755 45788999
Q ss_pred eeCCCCCCch-hhHHHHhhcCCC--CCCHH----HHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFN-DTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~--~~sde----ei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||||++.+|. .|++||+.+... ..+.+ ++.++++..++ ++..++.++ +||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~----~LS~G 142 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKVG----ELSGG 142 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCchh----hCCHH
Confidence 9999999986 699999986321 12332 33444554444 344555553 57775
No 228
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=7.3e-22 Score=186.34 Aligned_cols=94 Identities=28% Similarity=0.611 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
++++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 478999999964 57999999999999999999999999999999999999999999999999998766 6778899999
Q ss_pred CCCCCCchh-hHHHHhh
Q 007539 539 PQDTVLFND-TIFHNIR 554 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~ 554 (599)
+|++.+|.+ |++||+.
T Consensus 79 ~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 79 PEEPSLYENLTVRENLK 95 (173)
T ss_pred ecCCccccCCcHHHHhh
Confidence 999999986 9999986
No 229
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.2e-22 Score=195.44 Aligned_cols=120 Identities=30% Similarity=0.478 Sum_probs=102.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 578999999964 38999999999999999999999999999999999999999999999999987654 36789999
Q ss_pred CCCCCCch-hhHHHHhhcCCCC--C----CHHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDTVLFN-DTIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~--~----sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|++.+|. .|++||+.++... . .++++.++++..++.+++.+.|
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 127 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc
Confidence 99999995 7999999875321 1 2345677888888877766655
No 230
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.86 E-value=8e-22 Score=202.74 Aligned_cols=96 Identities=30% Similarity=0.455 Sum_probs=88.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.+. ...+|+.++|
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEE
Confidence 589999999996 45799999999999999999999999999999999999999999999999998764 3567889999
Q ss_pred eCCCCCCch-hhHHHHhhc
Q 007539 538 VPQDTVLFN-DTIFHNIRY 555 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~ 555 (599)
|||++.+|. .|++||+.+
T Consensus 82 v~q~~~~~~~~tv~e~l~~ 100 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLV 100 (303)
T ss_pred EeccccCCcCCcHHHHHHH
Confidence 999999885 699999975
No 231
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8.4e-22 Score=198.21 Aligned_cols=134 Identities=26% Similarity=0.358 Sum_probs=111.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--CHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~--~~~~ 530 (599)
.+.++++++.|. +.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. ....
T Consensus 8 ~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 588999999995 45799999999999999999999999999999999999987 799999999998653 4456
Q ss_pred HhhhceeeCCCCCCchhhHHHHhhcCCC-----CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~gTIreNI~~g~~-----~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+.++||+|++.+|..|+.|||.++.. ...++++.++++.+++.+.+... .++...+||||
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G 153 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGG 153 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHH
Confidence 7889999999999999999999987631 11235788889988887665432 34566678886
No 232
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.9e-22 Score=201.45 Aligned_cols=135 Identities=33% Similarity=0.437 Sum_probs=106.3
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCC--CHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEV--TLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~~--~~~ 529 (599)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 38 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 38 PHVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred eEEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 36999999999963 579999999999999999999999999999999999865 4999999999998653 334
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCCC--CC-C----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~-s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.+|+.++||+|++.+|..|++|||.++.. .. + ++++.++++..++.+.+.. ........||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 186 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGG 186 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHH
Confidence 67889999999999999999999987531 11 1 2345667777666443321 223455678886
No 233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=7.3e-22 Score=191.04 Aligned_cols=98 Identities=28% Similarity=0.398 Sum_probs=89.1
Q ss_pred eEEEEEEEEeecC---CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCCHHHH
Q 007539 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~---p~~G~I~idG~di~~~~~~~l 531 (599)
.+.++||+|.|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 4789999999973 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hhhceeeCCCCCCch-hhHHHHhhcC
Q 007539 532 RKSIGVVPQDTVLFN-DTIFHNIRYG 556 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~-gTIreNI~~g 556 (599)
++.++||+|++.+|. .|++|||.++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~ 107 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFA 107 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhh
Confidence 888999999998887 4999999875
No 234
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.86 E-value=8.8e-22 Score=184.31 Aligned_cols=87 Identities=28% Similarity=0.433 Sum_probs=81.2
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 578999999975567999999999999999999999999999999999999999999999883 579999
Q ss_pred CCCCCCchhhHHHHhhcC
Q 007539 539 PQDTVLFNDTIFHNIRYG 556 (599)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g 556 (599)
+|++.++++|++|||.++
T Consensus 70 ~q~~~~~~~tv~~nl~~~ 87 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP 87 (166)
T ss_pred CCCCccccccHHHHhhcc
Confidence 999999999999999873
No 235
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1e-21 Score=184.97 Aligned_cols=95 Identities=55% Similarity=0.848 Sum_probs=89.8
Q ss_pred EEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
|+++|++++|++. .++++|+||+|++|+.++|+|++|||||||+++|+|+++|++|+|.++|.++.+++...+|+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 5789999999753 379999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eCCCCCCchhhHHHHh
Q 007539 538 VPQDTVLFNDTIFHNI 553 (599)
Q Consensus 538 V~Qd~~LF~gTIreNI 553 (599)
++|++.+|+.|+.||+
T Consensus 81 ~~~~~~~~~~t~~e~l 96 (171)
T cd03228 81 VPQDPFLFSGTIRENI 96 (171)
T ss_pred EcCCchhccchHHHHh
Confidence 9999999999999997
No 236
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=1e-21 Score=203.36 Aligned_cols=117 Identities=22% Similarity=0.324 Sum_probs=97.1
Q ss_pred eEEEEEEEEeecC------------CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 007539 458 SIQFDNVHFSYLT------------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (599)
Q Consensus 458 ~I~f~nVsF~Y~~------------~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (599)
-|+++|++.+|+. ..++++|+||+|++||++||||+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 5899999999963 1369999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhhhceeeCCCC--CCc-hhhHHHHhhcC----CCCCCHH----HHHHHHHHcCc
Q 007539 526 VTLES---LRKSIGVVPQDT--VLF-NDTIFHNIRYG----RLSATEE----EVYDAARRAAI 574 (599)
Q Consensus 526 ~~~~~---lR~~i~~V~Qd~--~LF-~gTIreNI~~g----~~~~sde----ei~~A~~~a~l 574 (599)
++.++ +|+.|+||+|+| .|| ..||.|||.++ .+..+.+ .+.++++.+++
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl 150 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGL 150 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC
Confidence 87654 677899999998 477 57999999653 1223433 34556666666
No 237
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.86 E-value=1.2e-21 Score=201.11 Aligned_cols=129 Identities=21% Similarity=0.377 Sum_probs=104.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.++++|++++|+ +..+|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++.+ +...+|+.++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 378999999996 4679999999999999999999999999999999999999999999999999977 44578889999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||++.+|.+ |++||+.+... ..+ ++++.++++..++.+.. .....+||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G 137 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKG 137 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHH
Confidence 9999999976 99999975321 112 34455566666655443 3334567775
No 238
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=1.4e-21 Score=188.21 Aligned_cols=124 Identities=18% Similarity=0.335 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++ +.++ ++||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+ ++.++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYI 75 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEec
Confidence 789999999963 4455 499999999999999999999999999999999999999999999887643 3569999
Q ss_pred CCCCC-CchhhHHHHhhcCCCCC-CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 539 PQDTV-LFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~~-sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|++. +|+.|++|||.++.+.. .++++.++++..+++++..+ .+.+||||
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G 127 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSG 127 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHH
Confidence 99875 47889999998864322 35677788888887665443 34567775
No 239
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=2e-21 Score=189.79 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=95.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++|++++|+ ++++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+. ..++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence 599999999996 35799999999999999999999999999999999999999999999999998753 34567999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC--CC-CHHHHHHHHHHcCchH
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL--SA-TEEEVYDAARRAAIHD 576 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~-sdeei~~A~~~a~l~d 576 (599)
++|++.+|.+ |++||+.++.. .. .++.+.++++..++.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~ 129 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG 129 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh
Confidence 9999999986 99999976421 12 2344556666665543
No 240
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=2.1e-21 Score=195.84 Aligned_cols=122 Identities=24% Similarity=0.363 Sum_probs=101.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCC-----CHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEV-----TLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~~-----~~~ 529 (599)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 589999999996 467999999999999999999999999999999999999986 49999999998654 345
Q ss_pred HHhhhceeeCCCCCCch-hhHHHHhhcCCCC--------------CCHHHHHHHHHHcCchHHHhc
Q 007539 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~-gTIreNI~~g~~~--------------~sdeei~~A~~~a~l~d~I~~ 580 (599)
.+++.++||+|++.+|. .|++||+.++..+ ..++++.++++..++.+.+..
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 148 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ 148 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC
Confidence 67889999999999887 5999999876321 113456777777777665444
No 241
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=1.9e-21 Score=193.93 Aligned_cols=97 Identities=28% Similarity=0.444 Sum_probs=87.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-hhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~~~~~~l-R~~i 535 (599)
|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++..++.... +..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 57899999996 45799999999999999999999999999999999999 47999999999999998887665 4459
Q ss_pred eeeCCCCCCchh-hHHHHhhcC
Q 007539 536 GVVPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g 556 (599)
+||+|++.+|.+ |++||+.+.
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred EeeeccccccCCcCHHHHHHHH
Confidence 999999999876 899999653
No 242
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.8e-21 Score=183.70 Aligned_cols=136 Identities=26% Similarity=0.450 Sum_probs=108.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (599)
-++++||+-.|.. .++|++|||++++||+++++|++|+||||++|.|+|+.+|.+|+|.++|.|+...+++.. |.-|+
T Consensus 3 mL~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4789999999964 689999999999999999999999999999999999999999999999999999998765 55699
Q ss_pred eeCCCCCCchh-hHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||||.-.+|.. ||.||+.+|.-...+++- ....+++.-+-+|. +......+|.+||||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP~-Lker~~~~aG~LSGG 140 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFPR-LKERRNQRAGTLSGG 140 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHChh-HHHHhcCcccCCChH
Confidence 99999999965 999999987422221111 11112233334443 445566788899997
No 243
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.3e-21 Score=194.39 Aligned_cols=98 Identities=33% Similarity=0.547 Sum_probs=88.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~~--~~~~~ 530 (599)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 488999999996 457999999999999999999999999999999999999875 8999999999875 34557
Q ss_pred HhhhceeeCCCCCCchh-hHHHHhhcC
Q 007539 531 LRKSIGVVPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~g-TIreNI~~g 556 (599)
+|+.++|++|++.+|.. |++||+.++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~ 109 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAG 109 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHH
Confidence 78899999999999985 999999865
No 244
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.85 E-value=2.6e-21 Score=201.03 Aligned_cols=97 Identities=31% Similarity=0.466 Sum_probs=89.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..+|+.|+|
T Consensus 41 ~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~ 118 (340)
T PRK13536 41 AIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGV 118 (340)
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEE
Confidence 599999999996 457999999999999999999999999999999999999999999999999998654 567889999
Q ss_pred eCCCCCCc-hhhHHHHhhcC
Q 007539 538 VPQDTVLF-NDTIFHNIRYG 556 (599)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g 556 (599)
|||++.+| +.|++||+.+.
T Consensus 119 v~q~~~~~~~~tv~e~l~~~ 138 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVF 138 (340)
T ss_pred EeCCccCCCCCcHHHHHHHH
Confidence 99999986 56999999853
No 245
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.85 E-value=2.4e-21 Score=190.73 Aligned_cols=118 Identities=25% Similarity=0.416 Sum_probs=93.6
Q ss_pred EEEEEEEEeecC----C--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC--CE--eCCCCCH
Q 007539 459 IQFDNVHFSYLT----E--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID--GQ--DICEVTL 528 (599)
Q Consensus 459 I~f~nVsF~Y~~----~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~id--G~--di~~~~~ 528 (599)
|+++||+++|++ + .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 469999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---H-hhhceeeCCCCCCchh-hHHHHhhcCC--CCCC----HHHHHHHHHHcCchH
Q 007539 529 ES---L-RKSIGVVPQDTVLFND-TIFHNIRYGR--LSAT----EEEVYDAARRAAIHD 576 (599)
Q Consensus 529 ~~---l-R~~i~~V~Qd~~LF~g-TIreNI~~g~--~~~s----deei~~A~~~a~l~d 576 (599)
.. + ++.++||+|++.+|.. |++|||.+.. ...+ ++++.++++..++.+
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 140 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE 140 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 43 3 4579999999988764 9999997531 1122 345556666666644
No 246
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=196.06 Aligned_cols=118 Identities=29% Similarity=0.410 Sum_probs=96.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh-hhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR-~~i~ 536 (599)
.|+++||+++|++++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++.. ..+ +.++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceEE
Confidence 69999999999755789999999999999999999999999999999999999999999999998752 233 4699
Q ss_pred eeCCCCCC---chhhHHHHhhcCCC---------C-CCHHHHHHHHHHcCchHHHh
Q 007539 537 VVPQDTVL---FNDTIFHNIRYGRL---------S-ATEEEVYDAARRAAIHDTIM 579 (599)
Q Consensus 537 ~V~Qd~~L---F~gTIreNI~~g~~---------~-~sdeei~~A~~~a~l~d~I~ 579 (599)
|++|++.+ +..+++||+.++.. . ..++++.++++..++.++..
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 137 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH 137 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc
Confidence 99999865 55689999875421 1 12345667788888876543
No 247
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.85 E-value=2.6e-21 Score=190.40 Aligned_cols=117 Identities=19% Similarity=0.334 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 57899999996 467999999999999999999999999999999999999999999999999876422 2479999
Q ss_pred CCCCCCch-hhHHHHhhcCCC--CCCHHHHHHHHHHcCchHHHhc
Q 007539 539 PQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~sdeei~~A~~~a~l~d~I~~ 580 (599)
+|++.+|. .|++||+.++.. ..+++++.++++..++.+....
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 120 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK 120 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh
Confidence 99999886 699999976421 2356778888888888765444
No 248
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.1e-21 Score=202.01 Aligned_cols=120 Identities=24% Similarity=0.380 Sum_probs=102.7
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHHHHhhh
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRKS 534 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~----~~~~lR~~ 534 (599)
|++ ||+++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +....++.
T Consensus 2 l~~-~l~k~~~~-~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 567 99999964 2 23 89999999999999999999999999999999999999999999998753 24456889
Q ss_pred ceeeCCCCCCch-hhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCc
Q 007539 535 IGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 535 i~~V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
++||+|++.+|. .|++|||.++.+...++++.++++..++.++..+.|
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 126 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP 126 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc
Confidence 999999999996 599999998865555678888999988877766655
No 249
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=3.7e-21 Score=194.33 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=97.7
Q ss_pred eEEEEEEEEeecC--------CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH
Q 007539 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~ 529 (599)
-|+++||+++|+. +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 24799999999999999999999999999999999999999999999999999766666
Q ss_pred HHhhhceeeCCCCC--Cch-hhHHHHhhcC---CCC----CCHHHHHHHHHHcCch
Q 007539 530 SLRKSIGVVPQDTV--LFN-DTIFHNIRYG---RLS----ATEEEVYDAARRAAIH 575 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~--LF~-gTIreNI~~g---~~~----~sdeei~~A~~~a~l~ 575 (599)
..++.++||+|++. ++. -|+.+|+.+. +.. ..++++.++++..+++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 139 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC
Confidence 66778999999985 443 4889998642 111 1235677888888884
No 250
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.2e-21 Score=194.79 Aligned_cols=134 Identities=25% Similarity=0.463 Sum_probs=106.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC------EeCCCCCHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG------QDICEVTLESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG------~di~~~~~~~l 531 (599)
.|+++|++++|+ ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++| .++.+++...+
T Consensus 10 ~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 10 VFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred heeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 699999999996 46799999999999999999999999999999999999999996666554 67777777788
Q ss_pred hhhceeeCCCCCCchh-hHHHHhhcCCC--CC-CH----HHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDTVLFND-TIFHNIRYGRL--SA-TE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~-sd----eei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+.++|++|++.+|.+ |++|||.++.. .. .+ +++.++++..++++++.. ...+....||||
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G 157 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGG 157 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHH
Confidence 9999999999999975 99999987532 11 22 235666777777554311 223345668875
No 251
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.8e-21 Score=189.84 Aligned_cols=122 Identities=30% Similarity=0.487 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE---eCCCCCHHHHhhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVTLESLRKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~---di~~~~~~~lR~~ 534 (599)
.|+++|++..|+ ..++++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++.+ .-.++
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 478889988885 457899999999999999999999999999999999999999999999999 666543 33457
Q ss_pred ceeeCCCCCCc-hhhHHHHhhcCC------CC--CCHHHHHHHHHHcCchHHHhcCc
Q 007539 535 IGVVPQDTVLF-NDTIFHNIRYGR------LS--ATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 535 i~~V~Qd~~LF-~gTIreNI~~g~------~~--~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
||+|+|+.-|| +.||+|||+||- |+ ..+.++.+-++.++|..+-+.-|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP 135 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP 135 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc
Confidence 99999999988 679999999995 21 23456777788888877666666
No 252
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.84 E-value=1.4e-21 Score=177.02 Aligned_cols=111 Identities=38% Similarity=0.642 Sum_probs=101.4
Q ss_pred cccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhh-HHHHh
Q 007539 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT-IFHNI 553 (599)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gT-IreNI 553 (599)
|+|+||+|++|++++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999885 9999
Q ss_pred hcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 554 RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 554 ~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
..++++.++++..++.+ ..++.++.+...||||
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~G 112 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGG 112 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHH
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHH
Confidence 45678888888887765 3567788888999986
No 253
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.84 E-value=2.8e-21 Score=185.75 Aligned_cols=97 Identities=33% Similarity=0.486 Sum_probs=88.7
Q ss_pred eEEEEEEEEeecC-----CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEECCEeCCCCCHHH
Q 007539 458 SIQFDNVHFSYLT-----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRIDGQDICEVTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~-----~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly--~p~~G~I~idG~di~~~~~~~ 530 (599)
.|+++||+|+|++ ++++|+|+||+|++||+++|+|++|||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 6899999999975 368999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhhhceeeCCCCCCch-hhHHHHhhcCC
Q 007539 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGR 557 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~-gTIreNI~~g~ 557 (599)
+++.++|++|++.+|. .|++||+.++.
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~ 107 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA 107 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH
Confidence 7889999999999887 49999998753
No 254
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=3.4e-21 Score=194.68 Aligned_cols=98 Identities=28% Similarity=0.486 Sum_probs=87.6
Q ss_pred eEEEEEEEEeecC--------CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-
Q 007539 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL- 528 (599)
Q Consensus 458 ~I~f~nVsF~Y~~--------~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~- 528 (599)
-|+++||+|+|++ ++++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 3899999999974 4689999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhhhceeeCCCCC--Cc-hhhHHHHhhc
Q 007539 529 --ESLRKSIGVVPQDTV--LF-NDTIFHNIRY 555 (599)
Q Consensus 529 --~~lR~~i~~V~Qd~~--LF-~gTIreNI~~ 555 (599)
..+|+.++||+|++. ++ +.|++||+.+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~ 114 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIRE 114 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHH
Confidence 356889999999983 43 4799999865
No 255
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.84 E-value=1e-20 Score=179.81 Aligned_cols=126 Identities=27% Similarity=0.382 Sum_probs=101.1
Q ss_pred eEEEEEEEEeecCCC---cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHHhh
Q 007539 458 SIQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRK 533 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~---~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~-~~~lR~ 533 (599)
.++++|+++.|+... ++|+||||+|++||++||||+||||||||+++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997544 6999999999999999999999999999999999999999999999997765543 447788
Q ss_pred hceeeCCCCCC-ch--hhHHHHh----hcCCCCCCHHHHHHHHHHcCchH-HHhcCcC
Q 007539 534 SIGVVPQDTVL-FN--DTIFHNI----RYGRLSATEEEVYDAARRAAIHD-TIMNFPA 583 (599)
Q Consensus 534 ~i~~V~Qd~~L-F~--gTIreNI----~~g~~~~sdeei~~A~~~a~l~d-~I~~Lp~ 583 (599)
.|-+|+|||+- +| -||++=| ....-+-.+++++++++.+++.+ |..+.|+
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~ 140 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH 140 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch
Confidence 99999999983 22 3555554 32222234567999999999865 4556663
No 256
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.84 E-value=7.1e-21 Score=190.98 Aligned_cols=130 Identities=22% Similarity=0.371 Sum_probs=102.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEECCEeCCCCCHHHHhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT----HSGSIRIDGQDICEVTLESLRK 533 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p----~~G~I~idG~di~~~~~~~lR~ 533 (599)
.|+++||+++| ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..++
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 68999999999 46799999999999999999999999999999999999999 999999999998632 22346
Q ss_pred hceeeCCCCC-Cch--hhHHHHhhcC----CCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 534 SIGVVPQDTV-LFN--DTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 534 ~i~~V~Qd~~-LF~--gTIreNI~~g----~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.++||+|++. .|. .|+.+|+.+. .....++++.++++..++.++ ++.+......||||
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G 144 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGG 144 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHH
Confidence 7999999985 444 5888887531 122345678888888887552 22344555678876
No 257
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=4.5e-22 Score=182.41 Aligned_cols=138 Identities=25% Similarity=0.464 Sum_probs=107.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (599)
.+..+|+..+|. .++|.+++||++++||.|++.||+|+||||.+.++.|+..|++|+|.+||.|+..++.... |--||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 578899999994 5789999999999999999999999999999999999999999999999999999998765 44599
Q ss_pred eeCCCCCCchh-hHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|.|||+.+|.+ |++|||..--+ ..+.+.+.+-++..+++.++++ .+...-...|..||||
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGG 143 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGG 143 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccc
Confidence 99999999977 99999976431 2222222223333333333333 2334445678899997
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.84 E-value=8.3e-21 Score=180.65 Aligned_cols=95 Identities=26% Similarity=0.461 Sum_probs=86.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (599)
-|+++|++++| +|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. +.+|+.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 48999999999 8999999999999999999999999999999999999999999999999998874 45678899
Q ss_pred eeCCCC----CCchhhHHHHhhcCC
Q 007539 537 VVPQDT----VLFNDTIFHNIRYGR 557 (599)
Q Consensus 537 ~V~Qd~----~LF~gTIreNI~~g~ 557 (599)
||+|++ .+++.|++||+.++.
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~ 103 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSS 103 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHh
Confidence 999995 345679999998764
No 259
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.5e-20 Score=194.56 Aligned_cols=118 Identities=31% Similarity=0.385 Sum_probs=97.3
Q ss_pred eEEEEEEEEeecC---------CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH
Q 007539 458 SIQFDNVHFSYLT---------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528 (599)
Q Consensus 458 ~I~f~nVsF~Y~~---------~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~ 528 (599)
-|+++|+++.|+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 5899999999962 2369999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhhhceeeCCCCC--Cch-hhHHHHhhcC---CCCC----CHHHHHHHHHHcCch
Q 007539 529 E---SLRKSIGVVPQDTV--LFN-DTIFHNIRYG---RLSA----TEEEVYDAARRAAIH 575 (599)
Q Consensus 529 ~---~lR~~i~~V~Qd~~--LF~-gTIreNI~~g---~~~~----sdeei~~A~~~a~l~ 575 (599)
. .+|++|+||+|||. |+. -||.+|+... +... ..+++.++++.++++
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 144 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR 144 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC
Confidence 4 56788999999984 554 4899888531 1111 234567778888775
No 260
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.83 E-value=6.3e-17 Score=167.31 Aligned_cols=270 Identities=18% Similarity=0.227 Sum_probs=178.5
Q ss_pred HHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHH
Q 007539 317 DASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALST-AMV------LCSHGI 389 (599)
Q Consensus 317 ~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~v 389 (599)
.........+.|-++|-.|+..+.+.++.++..+..........+...++..+-+++.--.... -++ +..-..
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~ 380 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLA 380 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccC
Confidence 3445566788999999999999999998888777766654444444334333322221111000 000 000111
Q ss_pred hcCCcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------ccCC--
Q 007539 390 LSGEMT--------VGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKAD-------------IQDR-- 446 (599)
Q Consensus 390 ~~g~lt--------~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~-------------~~~~-- 446 (599)
..++.. ..++++.-.++......+..+...+.++++-.+.-.|+.+.++.-.+ ..+.
T Consensus 381 s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~ 460 (728)
T KOG0064|consen 381 SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRT 460 (728)
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccC
Confidence 112211 12333334455666677888888888888888888888765421110 0000
Q ss_pred ----CCCCCCC-----CCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 007539 447 ----DNAMPLN-----LKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (599)
Q Consensus 447 ----~~~~~~~-----~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~ 517 (599)
.+..+.+ .....|.++||-.--|+.+-+...++|+|++|..+-|.||+|||||+|.++|.|+++...|...
T Consensus 461 ~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~ 540 (728)
T KOG0064|consen 461 IDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS 540 (728)
T ss_pred ccccccCCcCCccchhhcccceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee
Confidence 0001110 0123589999877777667788999999999999999999999999999999999999888776
Q ss_pred ECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCC-------CCCCHHHHHHHHHHcCchHHHhcCcCccccccc
Q 007539 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (599)
Q Consensus 518 idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~-------~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vg 590 (599)
+-- +.+|=|+||.|+.=-||+||-|.|-+ .+.+|+|+++.++.+.|+ .|.+-..|+|..-.
T Consensus 541 ~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~d 608 (728)
T KOG0064|consen 541 IPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLE-HILQREGGWDAVRD 608 (728)
T ss_pred cCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHH-HHHHhccChhhhcc
Confidence 532 23599999999999999999998864 368899999999999996 46666778776532
Q ss_pred cCcccCCCC
Q 007539 591 ERGLKIEGK 599 (599)
Q Consensus 591 E~G~~LSG~ 599 (599)
= -.-||||
T Consensus 609 W-kd~LsgG 616 (728)
T KOG0064|consen 609 W-KDVLSGG 616 (728)
T ss_pred H-Hhhccch
Confidence 1 1235554
No 261
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.83 E-value=9.1e-21 Score=198.55 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=93.1
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE----eCCCCCHHHHh----hhceeeCCCC
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ----DICEVTLESLR----KSIGVVPQDT 542 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~----di~~~~~~~lR----~~i~~V~Qd~ 542 (599)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+.+.+| ++|+||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 346899999999999999999999999999999999999999999999996 67777665543 5799999999
Q ss_pred CCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 543 VLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 543 ~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
.+|. .|++||+.++.. ..+ .+++.++++..++.++....|
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~ 162 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP 162 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 9997 799999998631 122 245677888888877665544
No 262
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.83 E-value=8.2e-21 Score=195.16 Aligned_cols=110 Identities=29% Similarity=0.443 Sum_probs=91.0
Q ss_pred eecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCch
Q 007539 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (599)
Q Consensus 467 ~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~ 546 (599)
+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++||||++.+|.
T Consensus 2 ~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCC
Confidence 463 4579999999999999999999999999999999999999999999999999976 44577889999999999997
Q ss_pred h-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHH
Q 007539 547 D-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTI 578 (599)
Q Consensus 547 g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I 578 (599)
. |++||+.+... ..+ ++++.++++..++.+..
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 118 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh
Confidence 6 99999986421 122 34566677777765443
No 263
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.83 E-value=2.4e-20 Score=187.63 Aligned_cols=135 Identities=22% Similarity=0.244 Sum_probs=100.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----CCCCCHHH--
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-----ICEVTLES-- 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d-----i~~~~~~~-- 530 (599)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 5899999999964 679999999999999999999999999999999999999999999999998 87776654
Q ss_pred --HhhhceeeCCCCC--Cc-hhhHHHHhhcCC---CCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 531 --LRKSIGVVPQDTV--LF-NDTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 531 --lR~~i~~V~Qd~~--LF-~gTIreNI~~g~---~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+++.++||+|++. ++ ..|+.|||.+.. ...+.+++.+. ++++++.++-+ ++.+...+..||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~-~~~~~~~~~~LS~G 155 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT-----AGDWLERVEID-AARIDDLPTTFSGG 155 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH-----HHHHHHHcCCC-hhHHhCCCccCCHH
Confidence 3557999999984 33 358888886421 01111222111 23444444321 13455667789986
No 264
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=2.4e-20 Score=189.89 Aligned_cols=118 Identities=30% Similarity=0.513 Sum_probs=104.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+..|..++.+|+||||+|++|+.+|++||+|||||||+|+|+|+..|++|+|.++|.|..+- ...+|++|||
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEE
Confidence 578999999996557899999999999999999999999999999999999999999999999998766 7788999999
Q ss_pred eCCCCCCchh-hHHHHhhcCC-----C-CCCHHHHHHHHHHcCchH
Q 007539 538 VPQDTVLFND-TIFHNIRYGR-----L-SATEEEVYDAARRAAIHD 576 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~-----~-~~sdeei~~A~~~a~l~d 576 (599)
|||++.++.. |++||+.|.. + +..++++.+.++..++.+
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~ 128 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED 128 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch
Confidence 9999998865 9999997742 2 133567889999998876
No 265
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.5e-20 Score=194.69 Aligned_cols=134 Identities=22% Similarity=0.348 Sum_probs=102.2
Q ss_pred eEEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCCHHH
Q 007539 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~----p~~G~I~idG~di~~~~~~~ 530 (599)
-|+++||++.|+.. .++|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37999999999743 369999999999999999999999999999999999998 48999999999999998877
Q ss_pred Hhh----hceeeCCCCC--Cch-hhH----HHHhhcCC--C-CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccC
Q 007539 531 LRK----SIGVVPQDTV--LFN-DTI----FHNIRYGR--L-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKI 596 (599)
Q Consensus 531 lR~----~i~~V~Qd~~--LF~-gTI----reNI~~g~--~-~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~L 596 (599)
+++ .|+||+|++. ++. -|+ .+|+.... . ...++++.++++..++.+... .+......|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhC
Confidence 654 6999999985 332 244 45554321 1 122456778888888864321 123445578
Q ss_pred CCC
Q 007539 597 EGK 599 (599)
Q Consensus 597 SG~ 599 (599)
|||
T Consensus 155 SgG 157 (326)
T PRK11022 155 SGG 157 (326)
T ss_pred CHH
Confidence 876
No 266
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.83 E-value=1.4e-20 Score=197.35 Aligned_cols=117 Identities=26% Similarity=0.392 Sum_probs=94.9
Q ss_pred EEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHHhhhceee
Q 007539 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESLRKSIGVV 538 (599)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~----~~~lR~~i~~V 538 (599)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.++||
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 88999963 33 4 999999999999999999999999999999999999999999999987543 34567889999
Q ss_pred CCCCCCchh-hHHHHhhcCCCCCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDTVLFND-TIFHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+|++.+|.. |++||+.++..... ++++.++++..++.+...+.|
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 129 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP 129 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh
Confidence 999999975 99999998743222 234667777777765554443
No 267
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.83 E-value=2.6e-20 Score=186.08 Aligned_cols=111 Identities=28% Similarity=0.454 Sum_probs=96.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGY 71 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEE
Confidence 589999999996 45799999999999999999999999999999999999999999999987 246999
Q ss_pred eCCCCCCch---hhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcC
Q 007539 538 VPQDTVLFN---DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 538 V~Qd~~LF~---gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~L 581 (599)
++|++.++. .|+++|+.+. +..+++++.++++..++.+.+...
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~ 117 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDAP 117 (251)
T ss_pred eccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhCC
Confidence 999998865 4899998764 345678889999999998776543
No 268
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.82 E-value=3.7e-20 Score=203.98 Aligned_cols=118 Identities=23% Similarity=0.403 Sum_probs=100.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh-hhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR-~~i~ 536 (599)
-|+++|++++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..++
T Consensus 11 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 599999999996 46799999999999999999999999999999999999999999999999999888776665 4699
Q ss_pred eeCCCCCCchh-hHHHHhhcCCCCC--CHHHHHHHHHHcCchH
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRLSA--TEEEVYDAARRAAIHD 576 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~--sdeei~~A~~~a~l~d 576 (599)
||+|++.+|.. |++||+.++.... .++++.++++..++.+
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~ 132 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL 132 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc
Confidence 99999998875 9999999874321 2345666777766644
No 269
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.3e-20 Score=179.10 Aligned_cols=95 Identities=27% Similarity=0.494 Sum_probs=86.2
Q ss_pred eEEEEEEEEeecC---CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEECCEeCCCCCHHHHh
Q 007539 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly--~p~~G~I~idG~di~~~~~~~lR 532 (599)
.|+++|++|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 5899999999974 257999999999999999999999999999999999986 489999999999885 5678
Q ss_pred hhceeeCCCCCCchh-hHHHHhhcC
Q 007539 533 KSIGVVPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 533 ~~i~~V~Qd~~LF~g-TIreNI~~g 556 (599)
+.++|++|++.+|.. |++||+.++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS 103 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH
Confidence 899999999988875 999999864
No 270
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.4e-20 Score=181.27 Aligned_cols=124 Identities=20% Similarity=0.310 Sum_probs=97.0
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----CHHHHhhhc
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRKSI 535 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~----~~~~lR~~i 535 (599)
++ ||+++|++ ..+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.+||.++.+. +...+++.+
T Consensus 3 ~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 3 CV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred ee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 45 89999975 344 99999999 99999999999999999999999999999999999998643 234578899
Q ss_pred eeeCCCCCCch-hhHHHHhhcCCCCCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFN-DTIFHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~~~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||+|++.+|. .|++||+.++....+ ++++.++++..++.+. +......||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 135 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHL-----------LNRYPAQLSGG 135 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhH-----------hhcCcccCCHH
Confidence 99999999985 599999987643212 2345555665555443 33445678875
No 271
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.82 E-value=3.4e-20 Score=185.95 Aligned_cols=98 Identities=24% Similarity=0.373 Sum_probs=88.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHHhh-h
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESLRK-S 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~~~~~~lR~-~ 534 (599)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++.+..++ .
T Consensus 7 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 5999999999963 5799999999999999999999999999999999998 6899999999999999888766655 4
Q ss_pred ceeeCCCCCCchh-hHHHHhhcC
Q 007539 535 IGVVPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g 556 (599)
++|++|++.+|.+ |+.+|+.++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~ 108 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLA 108 (252)
T ss_pred EEEEeccccccccccHHHHHHHh
Confidence 8999999999876 799998764
No 272
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.82 E-value=3.4e-20 Score=192.15 Aligned_cols=133 Identities=20% Similarity=0.328 Sum_probs=101.5
Q ss_pred eEEEEEEEEeecC---CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHH
Q 007539 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~~~~~~l 531 (599)
-++++|+++.|+. ..++++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.++.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 236999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----hhceeeCCCCC--Cch-hhHHHHhh----cCCCCCCHH----HHHHHHHHcCchHHHhcCcCccccccccCcccC
Q 007539 532 R----KSIGVVPQDTV--LFN-DTIFHNIR----YGRLSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKI 596 (599)
Q Consensus 532 R----~~i~~V~Qd~~--LF~-gTIreNI~----~g~~~~sde----ei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~L 596 (599)
+ +.|+||+||+. ++. -|+.+|+. ... ..+.+ ++.++++.+++ |++++ .++.....|
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~L 162 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-GMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEF 162 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccC
Confidence 4 47999999983 443 46777664 222 23333 33444444443 44332 255667789
Q ss_pred CCC
Q 007539 597 EGK 599 (599)
Q Consensus 597 SG~ 599 (599)
|||
T Consensus 163 SgG 165 (330)
T PRK09473 163 SGG 165 (330)
T ss_pred CHH
Confidence 986
No 273
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.9e-20 Score=205.17 Aligned_cols=98 Identities=23% Similarity=0.424 Sum_probs=89.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (599)
-|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 5 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 489999999996 4579999999999999999999999999999999999999999999999999988876554 45799
Q ss_pred eeCCCCCCchh-hHHHHhhcC
Q 007539 537 VVPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g 556 (599)
||+|++.+|.. |++||+.++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~ 104 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIG 104 (510)
T ss_pred EEeecccccCCCcHHHHhhhc
Confidence 99999988875 999999875
No 274
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.1e-20 Score=191.24 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=97.0
Q ss_pred eEEEEEEEEeecC---CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCCHHH
Q 007539 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~----p~~G~I~idG~di~~~~~~~ 530 (599)
-|+++|++++|+. ..++|+|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999963 2469999999999999999999999999999999999986 58999999999999888776
Q ss_pred Hh----hhceeeCCCCCC--c-hhhHHHHhhcCC------C----C--CCHHHHHHHHHHcCchH
Q 007539 531 LR----KSIGVVPQDTVL--F-NDTIFHNIRYGR------L----S--ATEEEVYDAARRAAIHD 576 (599)
Q Consensus 531 lR----~~i~~V~Qd~~L--F-~gTIreNI~~g~------~----~--~sdeei~~A~~~a~l~d 576 (599)
++ +.|+||+|++.. + ..||.+|+.... . + ..++++.++++..++++
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~ 147 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC
Confidence 54 479999999973 3 358999986410 0 0 11356778888888864
No 275
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.81 E-value=3.5e-20 Score=185.44 Aligned_cols=94 Identities=27% Similarity=0.415 Sum_probs=82.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHHh-hhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESLR-KSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~~~~~~lR-~~i 535 (599)
|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....+ +.+
T Consensus 2 i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 78999999996 45799999999999999999999999999999999999 479999999999999888876655 579
Q ss_pred eeeCCCCCCchh-hHHHHh
Q 007539 536 GVVPQDTVLFND-TIFHNI 553 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI 553 (599)
+||+|++.++.. |..+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~ 99 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFL 99 (248)
T ss_pred EEEecCchhccchhHHHHH
Confidence 999999987754 444443
No 276
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.6e-20 Score=203.84 Aligned_cols=99 Identities=31% Similarity=0.544 Sum_probs=89.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (599)
-|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.|+
T Consensus 4 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 589999999996 4579999999999999999999999999999999999999999999999999976553 45678899
Q ss_pred eeCCCCCCchh-hHHHHhhcCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~ 557 (599)
||+|++.+|.. |++||+.++.
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~ 104 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQ 104 (501)
T ss_pred EEEechhccCCCCHHHHHHhcc
Confidence 99999998875 9999998863
No 277
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=3.1e-20 Score=204.36 Aligned_cols=99 Identities=30% Similarity=0.476 Sum_probs=89.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (599)
-|+++|++++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.++
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 489999999996 467999999999999999999999999999999999999999999999999997766544 356799
Q ss_pred eeCCCCCCchh-hHHHHhhcCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~ 557 (599)
||+|++.+|.. |++||+.++.
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~ 104 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGR 104 (501)
T ss_pred EEEcchhccCCCcHHHHhhhcc
Confidence 99999988864 9999998863
No 278
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.81 E-value=6.9e-20 Score=183.06 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=93.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
++++||+++ .+|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+++.++||
T Consensus 1 ~~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 1 MQLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred Ccccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 356788775 27999999999999999999999999999999999985 599999999999988888888899999
Q ss_pred CCCCC-CchhhHHHHhhcCCCC-CC----HHHHHHHHHHcCchHHH
Q 007539 539 PQDTV-LFNDTIFHNIRYGRLS-AT----EEEVYDAARRAAIHDTI 578 (599)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~-~s----deei~~A~~~a~l~d~I 578 (599)
+|++. .+..|++||+.++.+. .+ ++++.++++..++.+..
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 120 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL 120 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh
Confidence 99985 5578999999987432 11 23456666666665443
No 279
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1e-19 Score=168.47 Aligned_cols=119 Identities=30% Similarity=0.504 Sum_probs=104.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+.+|+|++-. ++.+|+++||+++|||.+||+||+|||||||+|.|+|...|++|++.+||+++.+++..++-++-++.
T Consensus 2 i~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 78899998764 67799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-chhhHHHHhhcCC-CC-----CCHHH--HHHHHHHcCchHHH
Q 007539 539 PQDTVL-FNDTIFHNIRYGR-LS-----ATEEE--VYDAARRAAIHDTI 578 (599)
Q Consensus 539 ~Qd~~L-F~gTIreNI~~g~-~~-----~sdee--i~~A~~~a~l~d~I 578 (599)
||+..| |.-|++|-+.+|+ |. ..+++ ..+|+..+++..+-
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la 129 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh
Confidence 999987 9999999999996 21 22344 56777777776543
No 280
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.2e-19 Score=200.09 Aligned_cols=99 Identities=27% Similarity=0.514 Sum_probs=89.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCCHHH-Hhhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLES-LRKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~~~~~~-lR~~ 534 (599)
-|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++| ++|+|.+||.++...+... +|+.
T Consensus 5 ~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 489999999996 46799999999999999999999999999999999999996 8999999999998877654 4678
Q ss_pred ceeeCCCCCCchh-hHHHHhhcCC
Q 007539 535 IGVVPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~ 557 (599)
++||+|++.+|.. |++|||.++.
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~ 107 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGN 107 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcc
Confidence 9999999988864 9999998864
No 281
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.81 E-value=9e-20 Score=205.84 Aligned_cols=125 Identities=29% Similarity=0.432 Sum_probs=102.1
Q ss_pred eEEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH---
Q 007539 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL--- 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l--- 531 (599)
-|+++|++++|+++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hhhceeeCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 532 -RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 532 -R~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+.++||+|++.+|. .|+.||+.++.. ..+ ++++.+.++..++.+.+...|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 142 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc
Confidence 568999999999996 599999986421 111 234455566666655544443
No 282
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.81 E-value=5.7e-20 Score=174.57 Aligned_cols=80 Identities=36% Similarity=0.644 Sum_probs=76.0
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (599)
+++||+|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 57899999964 57999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred C
Q 007539 540 Q 540 (599)
Q Consensus 540 Q 540 (599)
|
T Consensus 80 q 80 (180)
T cd03214 80 Q 80 (180)
T ss_pred H
Confidence 9
No 283
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.81 E-value=1.2e-19 Score=182.18 Aligned_cols=97 Identities=29% Similarity=0.303 Sum_probs=84.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----CCCCCHHHH-
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-----ICEVTLESL- 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d-----i~~~~~~~l- 531 (599)
.|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++....
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 5899999999963 569999999999999999999999999999999999999999999999988 777765543
Q ss_pred ---hhhceeeCCCCC--C-chhhHHHHhhc
Q 007539 532 ---RKSIGVVPQDTV--L-FNDTIFHNIRY 555 (599)
Q Consensus 532 ---R~~i~~V~Qd~~--L-F~gTIreNI~~ 555 (599)
++.++|++|++. + +..|+.||+.+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~ 111 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGE 111 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHH
Confidence 457999999985 2 34588888853
No 284
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=1.2e-19 Score=162.27 Aligned_cols=125 Identities=32% Similarity=0.444 Sum_probs=100.5
Q ss_pred eEEEEEEEEeecC---CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---H
Q 007539 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~---l 531 (599)
-|++++++..-+. .-.+|++++|.|++||.+|||||||||||||+-+|+|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 4778888776653 236999999999999999999999999999999999999999999999999999998653 4
Q ss_pred h-hhceeeCCCCCCc-hhhHHHHhhcCC----CCCCH--HHHHHHHHHcCchHHHhcCc
Q 007539 532 R-KSIGVVPQDTVLF-NDTIFHNIRYGR----LSATE--EEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 532 R-~~i~~V~Qd~~LF-~gTIreNI~~g~----~~~sd--eei~~A~~~a~l~d~I~~Lp 582 (599)
| +++|+|+|..+|. +-|-.||+.+-. +...| +.-.+-++.+++.+-+...|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP 144 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP 144 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc
Confidence 4 4799999999876 679999997632 11112 23456667777777666666
No 285
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.80 E-value=5.1e-20 Score=206.92 Aligned_cols=133 Identities=23% Similarity=0.323 Sum_probs=103.6
Q ss_pred eEEEEEEEEeec--------CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCC
Q 007539 458 SIQFDNVHFSYL--------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEV 526 (599)
Q Consensus 458 ~I~f~nVsF~Y~--------~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~~ 526 (599)
+++|.++. +++ .++++|+|+|++|++||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 56666665 542 2457999999999999999999999999999999999999885 899999999875
Q ss_pred CHHHHhhhceeeCCCCCCch-hhHHHHhhcCCC-----CCCHHHHHHHHHHcCchHHHhc--CcCccccccccC--cccC
Q 007539 527 TLESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGER--GLKI 596 (599)
Q Consensus 527 ~~~~lR~~i~~V~Qd~~LF~-gTIreNI~~g~~-----~~sdeei~~A~~~a~l~d~I~~--Lp~G~dT~vgE~--G~~L 596 (599)
...+|+.++||+|++.+|. .||+|||.++.. +.+.++..+ .+++.++. |++..||.||+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRE-----RVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 4678899999999999995 599999987631 223333211 12333443 456789999985 4789
Q ss_pred CCC
Q 007539 597 EGK 599 (599)
Q Consensus 597 SG~ 599 (599)
|||
T Consensus 168 SgG 170 (617)
T TIGR00955 168 SGG 170 (617)
T ss_pred Ccc
Confidence 997
No 286
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.9e-20 Score=200.00 Aligned_cols=96 Identities=33% Similarity=0.503 Sum_probs=85.6
Q ss_pred EEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhceeeC
Q 007539 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVP 539 (599)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i~~V~ 539 (599)
++|++++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||+++...+. +.+|+.++||+
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 468999996 4579999999999999999999999999999999999999999999999999977654 34577899999
Q ss_pred CCCCCch-hhHHHHhhcCC
Q 007539 540 QDTVLFN-DTIFHNIRYGR 557 (599)
Q Consensus 540 Qd~~LF~-gTIreNI~~g~ 557 (599)
|++.+|. .|++||+.++.
T Consensus 80 q~~~~~~~~tv~~~l~~~~ 98 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGR 98 (491)
T ss_pred cccccccCCCHHHHhhccc
Confidence 9998765 59999998763
No 287
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.79 E-value=1.5e-19 Score=179.40 Aligned_cols=84 Identities=29% Similarity=0.475 Sum_probs=74.5
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC-CCCCCc-hhhH
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP-QDTVLF-NDTI 549 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~-Qd~~LF-~gTI 549 (599)
+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+. ...+++.++|++ |++.+| +.|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4799999999999999999999999999999999999999999999999987653 346788999997 666776 5799
Q ss_pred HHHhhcC
Q 007539 550 FHNIRYG 556 (599)
Q Consensus 550 reNI~~g 556 (599)
+||+.+.
T Consensus 113 ~e~l~~~ 119 (236)
T cd03267 113 IDSFYLL 119 (236)
T ss_pred HHHHHHH
Confidence 9999764
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=3.4e-19 Score=195.79 Aligned_cols=120 Identities=25% Similarity=0.222 Sum_probs=101.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 3899999999963 569999999999999999999999999999999999999999999999998887777778888999
Q ss_pred eCCCCCC---------chhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhc
Q 007539 538 VPQDTVL---------FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 538 V~Qd~~L---------F~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~ 580 (599)
|+|++.+ +..|++||+.++. ..++++.++++..++.+....
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhhhC
Confidence 9998753 2469999987642 234567788888877654433
No 289
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.79 E-value=3.9e-19 Score=214.62 Aligned_cols=131 Identities=26% Similarity=0.416 Sum_probs=108.1
Q ss_pred eEEEEEEEEeec---CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCCHHHH
Q 007539 458 SIQFDNVHFSYL---TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~---~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~---p~~G~I~idG~di~~~~~~~l 531 (599)
.++++||++.|+ +++++|+|||++|++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 24579999999999999999999999999999999999998 78899999999985 257
Q ss_pred hhhceeeCCCCC-CchhhHHHHhhcCC----C-CCCHHH----HHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDTV-LFNDTIFHNIRYGR----L-SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~~-LF~gTIreNI~~g~----~-~~sdee----i~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+.++||+|++. +++.|++||+.++. | +.++++ +.++++..++. +-.|+.+|+.|.+||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgG 905 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVE 905 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHH
Confidence 889999999865 56789999998752 2 234433 45556655553 44799999999999997
No 290
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.79 E-value=2.6e-19 Score=197.16 Aligned_cols=98 Identities=24% Similarity=0.462 Sum_probs=88.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCCHHH-Hhhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLES-LRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~~~~~~-lR~~i 535 (599)
|+++|++++|+ ++++|+|+||++++|+++||+|+||||||||+++|+|+++| ++|+|.+||.++...+... .|+.|
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999996 45799999999999999999999999999999999999987 7999999999998877654 45679
Q ss_pred eeeCCCCCCchh-hHHHHhhcCC
Q 007539 536 GVVPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~ 557 (599)
+||+|++.+|.. |++||+.++.
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~ 103 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGN 103 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhc
Confidence 999999988865 9999998763
No 291
>PLN03211 ABC transporter G-25; Provisional
Probab=99.79 E-value=6.7e-19 Score=197.96 Aligned_cols=119 Identities=29% Similarity=0.423 Sum_probs=94.2
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--CceEEECCEeCCCCCHHHHhhhceeeCCCCCCch-hh
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DT 548 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~--~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~-gT 548 (599)
+++|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..+++++||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999985 8999999998742 45667999999999995 59
Q ss_pred HHHHhhcCC----C-CCCHHHHHHHHHHcCchHHHh--cCcCccccccccC-cccCCCC
Q 007539 549 IFHNIRYGR----L-SATEEEVYDAARRAAIHDTIM--NFPAKYSTVVGER-GLKIEGK 599 (599)
Q Consensus 549 IreNI~~g~----~-~~sdeei~~A~~~a~l~d~I~--~Lp~G~dT~vgE~-G~~LSG~ 599 (599)
++||+.++. | +.++++..+.++ +.++ .|++..||.+|++ ...||||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~t~vg~~~~~~LSgG 210 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAE-----SVISELGLTKCENTIIGNSFIRGISGG 210 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHH-----HHHHHcCChhhcCceeCCCCCCCcChh
Confidence 999998752 2 234444333222 2232 3455669999875 6789997
No 292
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.79 E-value=3.5e-19 Score=172.07 Aligned_cols=94 Identities=26% Similarity=0.416 Sum_probs=84.2
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-hhhc
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~~~~~~l-R~~i 535 (599)
++++||+++|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 47899999996 45799999999999999999999999999999999999 58999999999999999887654 4569
Q ss_pred eeeCCCCCCchh-hHHHHh
Q 007539 536 GVVPQDTVLFND-TIFHNI 553 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI 553 (599)
+||+|++.+|.+ |+++|+
T Consensus 80 ~~v~q~~~~~~~~~~~~~l 98 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL 98 (200)
T ss_pred EEeecChhhccCccHHHHH
Confidence 999999999986 566666
No 293
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=9.4e-20 Score=173.43 Aligned_cols=97 Identities=26% Similarity=0.446 Sum_probs=89.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhcee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~~ 537 (599)
++.+|++.+|. +-.+++|+||++++||.+||+||+||||||++|+|.|+|+|++|+|.++|.||..+++... |.-|+-
T Consensus 5 L~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 5 LEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 57899999995 4569999999999999999999999999999999999999999999999999999998876 445999
Q ss_pred eCCCCCCchh-hHHHHhhcC
Q 007539 538 VPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g 556 (599)
-+|.+.+|.+ |+.||+..+
T Consensus 84 TFQ~~rlF~~lTVlENv~va 103 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVG 103 (250)
T ss_pred ecccccccCCCcHHHHHHHH
Confidence 9999999976 999999876
No 294
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.9e-19 Score=199.96 Aligned_cols=124 Identities=27% Similarity=0.339 Sum_probs=99.2
Q ss_pred eEEEEEEEEeecC----------CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 007539 458 SIQFDNVHFSYLT----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (599)
Q Consensus 458 ~I~f~nVsF~Y~~----------~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~ 527 (599)
-|+++||++.|+. ..++|+|+||+|++||++||||+||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 5999999999962 146999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HHhhhceeeCCCCC--Cch-hhHHHHhhcCC--CCC-C----HHHHHHHHHHcCch-HHHhcC
Q 007539 528 LE---SLRKSIGVVPQDTV--LFN-DTIFHNIRYGR--LSA-T----EEEVYDAARRAAIH-DTIMNF 581 (599)
Q Consensus 528 ~~---~lR~~i~~V~Qd~~--LF~-gTIreNI~~g~--~~~-s----deei~~A~~~a~l~-d~I~~L 581 (599)
.. .+|+.|+||+|++. ++. .|+.||+.++. ... + ++++.++++..++. +...+.
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 460 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY 460 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC
Confidence 43 45778999999983 664 59999997531 011 1 24566777777774 333333
No 295
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.6e-19 Score=161.87 Aligned_cols=115 Identities=25% Similarity=0.412 Sum_probs=93.4
Q ss_pred eEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
.+..++++.+|+. ..++|+|+|++|.+||.++++||||||||||+++++||.+|..|+|.+||.+|..-.- .=|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 3567788999974 2359999999999999999999999999999999999999999999999999876543 358
Q ss_pred eeCCCCCCchh-hHHHHhhcCCC--CCCH----HHHHHHHHHcCchHH
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDT 577 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~sd----eei~~A~~~a~l~d~ 577 (599)
+|+|++-|+.- ++.||+.||-. .++. +...+.+..+++.++
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~ 125 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA 125 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc
Confidence 99999999985 99999999842 2333 233455566666554
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=5.3e-19 Score=165.01 Aligned_cols=81 Identities=31% Similarity=0.535 Sum_probs=75.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhcee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i~~ 537 (599)
|+++||+++|++ .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+. +..++.++|
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 578999999964 579999999999999999999999999999999999999999999999999998876 456778999
Q ss_pred eCC
Q 007539 538 VPQ 540 (599)
Q Consensus 538 V~Q 540 (599)
++|
T Consensus 80 ~~q 82 (163)
T cd03216 80 VYQ 82 (163)
T ss_pred EEe
Confidence 999
No 297
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.77 E-value=5e-19 Score=196.15 Aligned_cols=117 Identities=26% Similarity=0.418 Sum_probs=94.8
Q ss_pred eEEEEEEEEeecC----------CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 007539 458 SIQFDNVHFSYLT----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (599)
Q Consensus 458 ~I~f~nVsF~Y~~----------~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~ 527 (599)
-|+++||+++|+. ++++|+|+||+|++|+++||+|+||||||||+++|+|++ |++|+|.+||.++.+++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 5899999999962 357999999999999999999999999999999999998 59999999999998776
Q ss_pred HHH---HhhhceeeCCCC--CCch-hhHHHHhhcCCC----CCC----HHHHHHHHHHcCch
Q 007539 528 LES---LRKSIGVVPQDT--VLFN-DTIFHNIRYGRL----SAT----EEEVYDAARRAAIH 575 (599)
Q Consensus 528 ~~~---lR~~i~~V~Qd~--~LF~-gTIreNI~~g~~----~~s----deei~~A~~~a~l~ 575 (599)
... +|+.++||+|++ .+|. .|++||+.++.. ..+ ++++.++++..++.
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 415 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCC
Confidence 543 477899999998 3665 599999986410 111 23455666666664
No 298
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.77 E-value=9.4e-19 Score=172.88 Aligned_cols=100 Identities=26% Similarity=0.353 Sum_probs=81.5
Q ss_pred cccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCch-hhHHHHh
Q 007539 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIFHNI 553 (599)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~-gTIreNI 553 (599)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999877553 2489999999987 5999999
Q ss_pred hcCC----CCCCH----HHHHHHHHHcCchHHHh
Q 007539 554 RYGR----LSATE----EEVYDAARRAAIHDTIM 579 (599)
Q Consensus 554 ~~g~----~~~sd----eei~~A~~~a~l~d~I~ 579 (599)
.++. +..++ +++.++++..++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 109 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD 109 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHc
Confidence 8741 22332 23556666666655443
No 299
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.77 E-value=6.4e-19 Score=182.45 Aligned_cols=116 Identities=27% Similarity=0.470 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH-HHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~-~lR~~i~ 536 (599)
.++++|++..|| +-.+++||||+|++||+-||.|++|+|||||+++|.|+|+|++|+|++||++++=-++. ..|.-||
T Consensus 4 ~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 689999999998 56789999999999999999999999999999999999999999999999999866655 5666799
Q ss_pred eeCCCCCCchh-hHHHHhhcCCCCC-----C----HHHHHHHHHHcCc
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRLSA-----T----EEEVYDAARRAAI 574 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~-----s----deei~~A~~~a~l 574 (599)
+|.|.+.|++. |+.|||.+|.+.. + .+++.+.++.-++
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl 130 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL 130 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCC
Confidence 99999999976 9999999998631 2 3445555555443
No 300
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=5.4e-19 Score=172.80 Aligned_cols=109 Identities=33% Similarity=0.541 Sum_probs=96.7
Q ss_pred cccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh----hhceeeCCCCCCc-hhhH
Q 007539 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR----KSIGVVPQDTVLF-NDTI 549 (599)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR----~~i~~V~Qd~~LF-~gTI 549 (599)
++|+||+|+.||+..|-|-||||||||++++.||++|+.|+|++||.|+..++.++|| +.+++|+|..-|| +.||
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV 123 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV 123 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence 7899999999999999999999999999999999999999999999999999988764 4799999999988 5699
Q ss_pred HHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcC
Q 007539 550 FHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 550 reNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~ 583 (599)
.||..||-+ ..+ ++...++++.++|++|=.+.|+
T Consensus 124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999953 222 3557788999999999887774
No 301
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.9e-19 Score=162.70 Aligned_cols=117 Identities=29% Similarity=0.508 Sum_probs=104.0
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+.+|. ++.||+|+|++|++|+.++|+||+|+|||||+.++.||.++++|+|.+||.++.+.+-++|-+.+++.
T Consensus 2 I~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 78899999995 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchh-hHHHHhhcCCCCC--------CHHHHHHHHHHcCchH
Q 007539 539 PQDTVLFND-TIFHNIRYGRLSA--------TEEEVYDAARRAAIHD 576 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~--------sdeei~~A~~~a~l~d 576 (599)
-|+..+-.. ||||=+.||+-.+ +...+.+|++-.+|.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~ 127 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED 127 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc
Confidence 999998654 9999999997322 2244677887777654
No 302
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=7.9e-19 Score=193.48 Aligned_cols=99 Identities=24% Similarity=0.393 Sum_probs=86.3
Q ss_pred eEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEECCEeCCCCCH-HHHhh
Q 007539 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTL-ESLRK 533 (599)
Q Consensus 458 ~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-p~~G~I~idG~di~~~~~-~~lR~ 533 (599)
-|+++||+++|+. +.++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999952 4579999999999999999999999999999999999999 599999999999876543 34577
Q ss_pred hceeeCCCC---CCc-hhhHHHHhhcC
Q 007539 534 SIGVVPQDT---VLF-NDTIFHNIRYG 556 (599)
Q Consensus 534 ~i~~V~Qd~---~LF-~gTIreNI~~g 556 (599)
.++||+|++ .+| +.|+.||+.++
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLA 365 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence 899999996 355 46999999865
No 303
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.7e-19 Score=193.43 Aligned_cols=96 Identities=24% Similarity=0.415 Sum_probs=85.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (599)
-|+++|+++.|. .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|+
T Consensus 265 ~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 599999999763 38999999999999999999999999999999999999999999999999876543 45677899
Q ss_pred eeCCCC---CCch-hhHHHHhhcC
Q 007539 537 VVPQDT---VLFN-DTIFHNIRYG 556 (599)
Q Consensus 537 ~V~Qd~---~LF~-gTIreNI~~g 556 (599)
||+|++ .+|. -|++||+.++
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccc
Confidence 999984 5665 5999999875
No 304
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.4e-18 Score=181.91 Aligned_cols=100 Identities=31% Similarity=0.455 Sum_probs=91.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhh-hce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~-~i~ 536 (599)
-++++|++.+|+ +.++|+|+||++.+||..|++|++|||||||+|.|.|.|+|++|+|.+||++..-.++.+-++ -|+
T Consensus 8 ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 8 LLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred eeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 588999999996 457999999999999999999999999999999999999999999999999999777666554 599
Q ss_pred eeCCCCCCch-hhHHHHhhcCCC
Q 007539 537 VVPQDTVLFN-DTIFHNIRYGRL 558 (599)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~ 558 (599)
.|.||..|+. -||.|||-+|++
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred EEeechhccCCccHHHHhhcccc
Confidence 9999999985 599999999975
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.76 E-value=8.4e-19 Score=194.01 Aligned_cols=118 Identities=24% Similarity=0.400 Sum_probs=93.2
Q ss_pred eEEEEEEEEeecC----CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC-CEe---CCCCC--
Q 007539 458 SIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID-GQD---ICEVT-- 527 (599)
Q Consensus 458 ~I~f~nVsF~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~id-G~d---i~~~~-- 527 (599)
-|+++||+++|++ +.++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999952 2479999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhhhceeeCCCCCCch-hhHHHHhhcCC----CC-CCHHHHHHHHHHcCch
Q 007539 528 -LESLRKSIGVVPQDTVLFN-DTIFHNIRYGR----LS-ATEEEVYDAARRAAIH 575 (599)
Q Consensus 528 -~~~lR~~i~~V~Qd~~LF~-gTIreNI~~g~----~~-~sdeei~~A~~~a~l~ 575 (599)
...+|+.|+||+|++.+|. .|++||+.++. +. ..++++.++++..++.
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ 413 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFD 413 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 2346778999999998887 49999997531 11 1123455666666664
No 306
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.76 E-value=1.4e-18 Score=210.64 Aligned_cols=131 Identities=23% Similarity=0.407 Sum_probs=107.1
Q ss_pred ceEEEEEEEEeec-CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 457 GSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
..|+++||++.|+ +++++++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.|+.. +...+|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996 35689999999999999999999999999999999999999999999999999975 566789999
Q ss_pred eeeCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|||||++.+|+. |++|||.++.. ..+ ++++.+.++..++.+... ....+||||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGG 1065 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----------EEAQDLSGG 1065 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHH
Confidence 999999999974 99999987421 122 245666677666654332 334567776
No 307
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.7e-19 Score=197.60 Aligned_cols=118 Identities=23% Similarity=0.323 Sum_probs=92.9
Q ss_pred eEEEEEEEEeecC---CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC----------
Q 007539 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---------- 524 (599)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~---------- 524 (599)
-|+++|++++|+. +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 5999999999963 247999999999999999999999999999999999999999999999998652
Q ss_pred CCCHH---HHh-hhceeeCCCC--CCch-hhHHHHhhcCC---CCCCH----HHHHHHHHHcCch
Q 007539 525 EVTLE---SLR-KSIGVVPQDT--VLFN-DTIFHNIRYGR---LSATE----EEVYDAARRAAIH 575 (599)
Q Consensus 525 ~~~~~---~lR-~~i~~V~Qd~--~LF~-gTIreNI~~g~---~~~sd----eei~~A~~~a~l~ 575 (599)
+.+.. .+| +.|+||+|+| .++. -||+|||.++. ...+. +++.++++..++.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 156 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP 156 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC
Confidence 22322 333 4799999998 5765 59999998641 11222 3455666666663
No 308
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=1.3e-18 Score=152.29 Aligned_cols=123 Identities=24% Similarity=0.432 Sum_probs=106.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHHhhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~~~~~~lR~~ 534 (599)
-+.++||+.+-+ +.-.|.|+|++|.+||++-|.||||||||||+.-+.|.+.|+ +|++.+|++++..++.. +++
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQ 78 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhh
Confidence 367899997775 456899999999999999999999999999999999999884 89999999999988754 578
Q ss_pred ceeeCCCCCCchh-hHHHHhhcCCCC-----CCHHHHHHHHHHcCchHHHhcCcC
Q 007539 535 IGVVPQDTVLFND-TIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~~-----~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
+|+.+||++||.- ++-+||.|.-|. +-......|+++.+++++..+.|+
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~ 133 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA 133 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh
Confidence 9999999999965 999999998652 334557788899999998888774
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=1.3e-18 Score=193.52 Aligned_cols=88 Identities=25% Similarity=0.398 Sum_probs=80.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +..|+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 589999999997456799999999999999999999999999999999999999999999975 246999
Q ss_pred eCCCCCCch-hhHHHHhhcC
Q 007539 538 VPQDTVLFN-DTIFHNIRYG 556 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g 556 (599)
|+|++.+|. .|++|||.++
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEG 92 (552)
T ss_pred EeccCCCCCCCcHHHHHHHh
Confidence 999999986 5999999875
No 310
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.76 E-value=2e-18 Score=191.28 Aligned_cols=119 Identities=24% Similarity=0.424 Sum_probs=95.6
Q ss_pred eEEEEEEEEeecC---CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCCHH
Q 007539 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~~~~ 529 (599)
-|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 4899999999963 25799999999999999999999999999999999999987 799999999999887754
Q ss_pred H---Hh-hhceeeCCCCC--Cc-hhhHHHHhhcC---CCCCC----HHHHHHHHHHcCchH
Q 007539 530 S---LR-KSIGVVPQDTV--LF-NDTIFHNIRYG---RLSAT----EEEVYDAARRAAIHD 576 (599)
Q Consensus 530 ~---lR-~~i~~V~Qd~~--LF-~gTIreNI~~g---~~~~s----deei~~A~~~a~l~d 576 (599)
+ +| +.|+||+|++. ++ ..|++||+.++ ....+ ++++.++++..++.+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 145 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQ 145 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 3 33 57999999985 44 35899998632 11112 345667777777754
No 311
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=1e-18 Score=174.60 Aligned_cols=116 Identities=18% Similarity=0.245 Sum_probs=86.0
Q ss_pred EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCEeCCCCCHHH
Q 007539 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLES 530 (599)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~-----------idG~di~~~~~~~ 530 (599)
.||+++|++..++|+|+| .+++||++||+|+||||||||+++|+|+++|++|+|. +||+++.+...+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 478899975557999999 5999999999999999999999999999999999996 8899887764433
Q ss_pred Hhh--hceeeCCCCCCchhhHHHHhhcCCCC-CCHHHHHHHHHHcCchHHH
Q 007539 531 LRK--SIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTI 578 (599)
Q Consensus 531 lR~--~i~~V~Qd~~LF~gTIreNI~~g~~~-~sdeei~~A~~~a~l~d~I 578 (599)
.|. .+++++|++.++..++.+|+...-.. -.++++.++++..++.+..
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~ 133 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL 133 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh
Confidence 433 36888887776655544444332111 1235566777776665443
No 312
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=2.3e-18 Score=191.58 Aligned_cols=88 Identities=25% Similarity=0.405 Sum_probs=80.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..|+|
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGY 74 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 589999999996357899999999999999999999999999999999999999999999975 146999
Q ss_pred eCCCCCCchh-hHHHHhhcC
Q 007539 538 VPQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g 556 (599)
|+|++.+++. |++||+.++
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEG 94 (556)
T ss_pred EecCCCCCCCCcHHHHHHHh
Confidence 9999999865 999999875
No 313
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.75 E-value=1.9e-18 Score=191.15 Aligned_cols=120 Identities=23% Similarity=0.391 Sum_probs=92.0
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEC-----------------
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRID----------------- 519 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly--~p~~G~I~id----------------- 519 (599)
|+++|++++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 57899999995 467999999999999999999999999999999999996 7999999997
Q ss_pred ------CEeCC-------CCC---HHHHhhhceeeCCC-CCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCch
Q 007539 520 ------GQDIC-------EVT---LESLRKSIGVVPQD-TVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIH 575 (599)
Q Consensus 520 ------G~di~-------~~~---~~~lR~~i~~V~Qd-~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~ 575 (599)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ..+ ++++.++++..++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 33321 111 23467789999998 56776 599999986421 122 23466667777765
Q ss_pred HHHh
Q 007539 576 DTIM 579 (599)
Q Consensus 576 d~I~ 579 (599)
+...
T Consensus 160 ~~~~ 163 (520)
T TIGR03269 160 HRIT 163 (520)
T ss_pred hhhh
Confidence 5443
No 314
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.75 E-value=8.9e-19 Score=148.51 Aligned_cols=76 Identities=29% Similarity=0.280 Sum_probs=72.6
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHH
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIre 551 (599)
.++|++++|++++|+.++|+||||||||||+++++ +|++.++|.|+..++.++.++.++++||+ +|++||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999987 89999999999999999999999999999 99999999
Q ss_pred Hhhc
Q 007539 552 NIRY 555 (599)
Q Consensus 552 NI~~ 555 (599)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9988
No 315
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.75 E-value=2.1e-18 Score=190.07 Aligned_cols=99 Identities=23% Similarity=0.425 Sum_probs=86.8
Q ss_pred eEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCH-HHHhh
Q 007539 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTL-ESLRK 533 (599)
Q Consensus 458 ~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~~~~-~~lR~ 533 (599)
-|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 5999999999952 35799999999999999999999999999999999999996 89999999999875543 56788
Q ss_pred hceeeCCCC---CCch-hhHHHHhhcC
Q 007539 534 SIGVVPQDT---VLFN-DTIFHNIRYG 556 (599)
Q Consensus 534 ~i~~V~Qd~---~LF~-gTIreNI~~g 556 (599)
+|+||+|++ .+|. .|++||+.++
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~ 363 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLS 363 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcch
Confidence 999999996 3555 5999999875
No 316
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.74 E-value=2.1e-18 Score=170.49 Aligned_cols=116 Identities=22% Similarity=0.338 Sum_probs=87.8
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEECCEeCCCCCHHHHhhhceeeCCCCC-Cch--
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT----HSGSIRIDGQDICEVTLESLRKSIGVVPQDTV-LFN-- 546 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p----~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~-LF~-- 546 (599)
+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998754 233468999999995 443
Q ss_pred hhHHHHhhcCC-----CC-CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 547 DTIFHNIRYGR-----LS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 547 gTIreNI~~g~-----~~-~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
-|+.||+.+.. +. ..++++.++++..++.+. ++........||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G 129 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGG 129 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHH
Confidence 58999885421 11 113456777777776521 12334445678876
No 317
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.74 E-value=3.2e-18 Score=168.38 Aligned_cols=86 Identities=29% Similarity=0.330 Sum_probs=71.0
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
+.++|++.+|. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||+++... ....+
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~-- 94 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG-- 94 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc--
Confidence 66777787885 46799999999999999999999999999999999999999999999999986421 11111
Q ss_pred CCCCCCchhhHHHHhhcC
Q 007539 539 PQDTVLFNDTIFHNIRYG 556 (599)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g 556 (599)
+..+.|++||+.++
T Consensus 95 ----~~~~~tv~enl~~~ 108 (224)
T cd03220 95 ----FNPELTGRENIYLN 108 (224)
T ss_pred ----CCCCCcHHHHHHHH
Confidence 22457999999875
No 318
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.74 E-value=7e-18 Score=204.74 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=102.4
Q ss_pred ceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
.-|+++||+++|++ ++++|+|+||+|++||++||+|++|||||||+|+|+|+.+|++|+|.++|.++.+ +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 36999999999975 3579999999999999999999999999999999999999999999999999975 456778899
Q ss_pred eeeCCCCCCch-hhHHHHhhcCC--CCCCH----HHHHHHHHHcCchHHHhcC
Q 007539 536 GVVPQDTVLFN-DTIFHNIRYGR--LSATE----EEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 536 ~~V~Qd~~LF~-gTIreNI~~g~--~~~sd----eei~~A~~~a~l~d~I~~L 581 (599)
||+||++.++. -|++||+.+.. ...++ +.+.++++..++.+..++.
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~ 2067 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL 2067 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC
Confidence 99999999886 59999997631 11222 3345667777776654443
No 319
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=2.4e-18 Score=159.72 Aligned_cols=128 Identities=23% Similarity=0.384 Sum_probs=106.8
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCC--c-h
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL--F-N 546 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~L--F-~ 546 (599)
.++++|+++||+|++|+++-|+|.+|||||||++.|+|-..|++|+|+|||+|+..++...--..++=|+|||-. + +
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 356899999999999999999999999999999999999999999999999999999999988899999999973 3 5
Q ss_pred hhHHHHhhcCCCC-----CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 547 DTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 547 gTIreNI~~g~~~-----~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
-||.||+.++... .+.. ...-+.....+-+..+|.|++-.++.+-.-||||
T Consensus 97 lTieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGG 152 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGG 152 (263)
T ss_pred ccHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccch
Confidence 5999999887422 2210 0111222334568889999999999888899997
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=6.7e-18 Score=187.16 Aligned_cols=86 Identities=21% Similarity=0.530 Sum_probs=78.9
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ..|+||
T Consensus 2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 78999999996 467999999999999999999999999999999999999999999999972 369999
Q ss_pred CCCCCCchh-hHHHHhhcC
Q 007539 539 PQDTVLFND-TIFHNIRYG 556 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g 556 (599)
+|++.+|.. |++||+.++
T Consensus 70 ~q~~~~~~~~tv~e~l~~~ 88 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMG 88 (530)
T ss_pred eccCCcCCCCcHHHHHHHh
Confidence 999988764 999999865
No 321
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.9e-18 Score=156.86 Aligned_cols=130 Identities=23% Similarity=0.408 Sum_probs=104.0
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
+++++++-+|++-..+++|+||+++.|+.++|.|++||||||+++.|..|+.|++|.|.+||.|+...+ ...|++||++
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGVl 80 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGVL 80 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhccee
Confidence 678999999986556899999999999999999999999999999999999999999999999998754 5778899999
Q ss_pred CCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHh----cCcCcccccc
Q 007539 539 PQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIM----NFPAKYSTVV 589 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~----~Lp~G~dT~v 589 (599)
+-+.-|+.. |.+|||.|... +.+ +.++.+..+.-++.|.+. .+..||-+.|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV 142 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKV 142 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHH
Confidence 988888865 99999987631 122 344555556666666543 3444444433
No 322
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=6e-18 Score=162.79 Aligned_cols=107 Identities=26% Similarity=0.474 Sum_probs=96.3
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CCHHHHhhhceeeCCCCCCc-hhhHHH
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRKSIGVVPQDTVLF-NDTIFH 551 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----~~~~~lR~~i~~V~Qd~~LF-~gTIre 551 (599)
++||+.+.-..+||-|+||||||||+|+++|+..|++|.|.+||.-+.| +...--+++||||+||.-|| +-|+|-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6889999889999999999999999999999999999999999987644 44556678999999999999 569999
Q ss_pred HhhcCCCCCCHHHHHHHHHHcCchHHHhcCcC
Q 007539 552 NIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (599)
Q Consensus 552 NI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~ 583 (599)
|++||....+.++..+.+...++.....+.|.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~ 127 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG 127 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCC
Confidence 99999987778899999999999999988884
No 323
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=8.7e-18 Score=167.25 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=81.0
Q ss_pred EeecCCCcccccceeEee-----CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCC
Q 007539 466 FSYLTERKILDGVSFVVP-----AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (599)
Q Consensus 466 F~Y~~~~~vL~~isl~I~-----~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 540 (599)
|+|++..+.++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|++|
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q 68 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQ 68 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecc
Confidence 678876678999999997 68999999999999999999999999999999999984 6999999
Q ss_pred CCC-CchhhHHHHhhcCCCCC--CHHHHHHHHHHcCchHH
Q 007539 541 DTV-LFNDTIFHNIRYGRLSA--TEEEVYDAARRAAIHDT 577 (599)
Q Consensus 541 d~~-LF~gTIreNI~~g~~~~--sdeei~~A~~~a~l~d~ 577 (599)
++. .++.|++||+.+..... ..+...++++..++.+.
T Consensus 69 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~ 108 (246)
T cd03237 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI 108 (246)
T ss_pred cccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHH
Confidence 987 57899999997643221 12334556666665543
No 324
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.72 E-value=7e-18 Score=165.89 Aligned_cols=96 Identities=26% Similarity=0.445 Sum_probs=79.3
Q ss_pred eEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCC---chhhHHHHhhcC
Q 007539 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL---FNDTIFHNIRYG 556 (599)
Q Consensus 480 l~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~L---F~gTIreNI~~g 556 (599)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+++++||+|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 356789999999976 468999999775
Q ss_pred C---------CC-CCHHHHHHHHHHcCchHHHhc
Q 007539 557 R---------LS-ATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 557 ~---------~~-~sdeei~~A~~~a~l~d~I~~ 580 (599)
. +. ..++++.++++..++.++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 109 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR 109 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC
Confidence 2 11 123567888888888765543
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.8e-17 Score=183.73 Aligned_cols=106 Identities=24% Similarity=0.425 Sum_probs=89.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +.++|
T Consensus 319 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~ 386 (530)
T PRK15064 319 ALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGY 386 (530)
T ss_pred eEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEE
Confidence 6999999999963 57999999999999999999999999999999999999999999999883 47999
Q ss_pred eCCCCC--Cc-hhhHHHHhhcCC-CCCCHHHHHHHHHHcCch
Q 007539 538 VPQDTV--LF-NDTIFHNIRYGR-LSATEEEVYDAARRAAIH 575 (599)
Q Consensus 538 V~Qd~~--LF-~gTIreNI~~g~-~~~sdeei~~A~~~a~l~ 575 (599)
|+|++. ++ +.|++||+.+.. +...++++.++++..++.
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 428 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS 428 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC
Confidence 999974 44 369999997532 223456677888887763
No 326
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.72 E-value=9.7e-18 Score=184.63 Aligned_cols=93 Identities=20% Similarity=0.445 Sum_probs=82.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (599)
-|+++||++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. +.+|+.|+
T Consensus 257 ~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 257 RLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 589999984 37999999999999999999999999999999999999999999999999987765 34677899
Q ss_pred eeCCCC---CCc-hhhHHHHhhcC
Q 007539 537 VVPQDT---VLF-NDTIFHNIRYG 556 (599)
Q Consensus 537 ~V~Qd~---~LF-~gTIreNI~~g 556 (599)
||+|++ .+| +.|++||+.++
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~ 354 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLT 354 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhh
Confidence 999997 344 56999999874
No 327
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.72 E-value=1.2e-17 Score=183.64 Aligned_cols=118 Identities=26% Similarity=0.320 Sum_probs=91.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCC-CCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICE-VTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~-~~~~~lR~~i 535 (599)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+.|
T Consensus 260 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 260 RIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred eEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 5999999999963 5699999999999999999999999999999999998876 69999999987632 2334567899
Q ss_pred eeeCCCCCCch---hhHHHHhhcCCC-------CCC---HHHHHHHHHHcCchH
Q 007539 536 GVVPQDTVLFN---DTIFHNIRYGRL-------SAT---EEEVYDAARRAAIHD 576 (599)
Q Consensus 536 ~~V~Qd~~LF~---gTIreNI~~g~~-------~~s---deei~~A~~~a~l~d 576 (599)
+||+|++.++. .|++|++.++.. ... ++++.++++..++.+
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 392 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK 392 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch
Confidence 99999987643 467777653310 111 234566666666643
No 328
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.1e-17 Score=184.34 Aligned_cols=94 Identities=24% Similarity=0.490 Sum_probs=82.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (599)
.++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +..|+.++
T Consensus 257 ~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 5899999842 48999999999999999999999999999999999999999999999999875543 45677899
Q ss_pred eeCCCCC---Cc-hhhHHHHhhcC
Q 007539 537 VVPQDTV---LF-NDTIFHNIRYG 556 (599)
Q Consensus 537 ~V~Qd~~---LF-~gTIreNI~~g 556 (599)
|++|++. +| +.|+.||+.++
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~ 355 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINIS 355 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccc
Confidence 9999973 55 57999999875
No 329
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=7.8e-17 Score=160.19 Aligned_cols=124 Identities=31% Similarity=0.502 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-C----CCceEEECCEeCCCCCHHH
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-T----HSGSIRIDGQDICEVTLES 530 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-p----~~G~I~idG~di~~~~~~~ 530 (599)
++++|++..|..+ .++++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999743 369999999999999999999999999999999999998 3 6799999999999999876
Q ss_pred Hhh----hceeeCCCCCC-ch--hh----HHHHhhcCCCC----CCHHHHHHHHHHcCchH---HHhcCc
Q 007539 531 LRK----SIGVVPQDTVL-FN--DT----IFHNIRYGRLS----ATEEEVYDAARRAAIHD---TIMNFP 582 (599)
Q Consensus 531 lR~----~i~~V~Qd~~L-F~--gT----IreNI~~g~~~----~sdeei~~A~~~a~l~d---~I~~Lp 582 (599)
+|+ .|++|+|||.- || -| |.|=+...... ...++..++++.+++.+ .+.+-|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 433 69999999752 32 13 44444432211 11346788888888875 344555
No 330
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=3.7e-17 Score=159.12 Aligned_cols=96 Identities=28% Similarity=0.524 Sum_probs=81.3
Q ss_pred eEEEEEEEEeecCC--------CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH
Q 007539 458 SIQFDNVHFSYLTE--------RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~--------~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~ 529 (599)
-++.+|++..|+.. ..+++||||+|++||+++|||+|||||||+.++|+||++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 47899999999632 26899999999999999999999999999999999999999999999999988776
Q ss_pred HHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchH-HHhcCcC
Q 007539 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHD-TIMNFPA 583 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d-~I~~Lp~ 583 (599)
.+..++++.+.++.+++.+ +..+.|+
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPh 108 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYPH 108 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCc
Confidence 1233567888999988766 5556554
No 331
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=5.8e-17 Score=195.38 Aligned_cols=133 Identities=23% Similarity=0.323 Sum_probs=105.1
Q ss_pred ceEEEEEEEEeec--C----------CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEe
Q 007539 457 GSIQFDNVHFSYL--T----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQD 522 (599)
Q Consensus 457 ~~I~f~nVsF~Y~--~----------~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~d 522 (599)
..++++||+|..+ . .+++|+|+|++|+||+.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 3699999999874 1 23699999999999999999999999999999999999874 78999999988
Q ss_pred CCCCCHHHHhhhceeeCCCCCCch-hhHHHHhhcCC----C-CCCHHH----HHHHHHHcCchHHHhcCcCccccccccC
Q 007539 523 ICEVTLESLRKSIGVVPQDTVLFN-DTIFHNIRYGR----L-SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGER 592 (599)
Q Consensus 523 i~~~~~~~lR~~i~~V~Qd~~LF~-gTIreNI~~g~----~-~~sdee----i~~A~~~a~l~d~I~~Lp~G~dT~vgE~ 592 (599)
.+ ...+|+.++||+|++.++. .|++|||.++. | +.++++ +.+.++..++.+ -.|+.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 64 3457788999999987765 59999998742 2 233333 556666666644 247778765
Q ss_pred c-ccCCCC
Q 007539 593 G-LKIEGK 599 (599)
Q Consensus 593 G-~~LSG~ 599 (599)
+ ..||||
T Consensus 1016 ~~~~LSgG 1023 (1470)
T PLN03140 1016 GVTGLSTE 1023 (1470)
T ss_pred CCCCcCHH
Confidence 5 579986
No 332
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.70 E-value=7.7e-17 Score=172.34 Aligned_cols=111 Identities=26% Similarity=0.343 Sum_probs=85.9
Q ss_pred eEEEEEEEEeecCC--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
.++++|++|+|++. +++|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999754 4699999999999999999999999999999999999999999999999752
Q ss_pred eeeCCCCCCc-hhhHHHHhhcCC--CCCCHHH----HHHHHHHcCchHHHhcC
Q 007539 536 GVVPQDTVLF-NDTIFHNIRYGR--LSATEEE----VYDAARRAAIHDTIMNF 581 (599)
Q Consensus 536 ~~V~Qd~~LF-~gTIreNI~~g~--~~~sdee----i~~A~~~a~l~d~I~~L 581 (599)
++.+++.++ ..|++|||.+.. ...++++ +.++++.+++.+++...
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~ 140 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP 140 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC
Confidence 122333333 359999997642 1233333 44567777777665543
No 333
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.70 E-value=6.9e-17 Score=172.01 Aligned_cols=125 Identities=30% Similarity=0.365 Sum_probs=97.9
Q ss_pred eEEEEEEEEeecC------C----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe--CCC
Q 007539 458 SIQFDNVHFSYLT------E----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD--ICE 525 (599)
Q Consensus 458 ~I~f~nVsF~Y~~------~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d--i~~ 525 (599)
-++++|++..|.. . ..+++||||++++||++||||+||||||||+++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 5889999999972 1 258999999999999999999999999999999999999999999999987 333
Q ss_pred CCHHHHhhhceeeCCCCCCc---hhhHHHHhhcC----CCC---CCHHHHHHHHHHcCchH-HHhcCc
Q 007539 526 VTLESLRKSIGVVPQDTVLF---NDTIFHNIRYG----RLS---ATEEEVYDAARRAAIHD-TIMNFP 582 (599)
Q Consensus 526 ~~~~~lR~~i~~V~Qd~~LF---~gTIreNI~~g----~~~---~sdeei~~A~~~a~l~d-~I~~Lp 582 (599)
-+...+|+.+-+|+|||+-- ..||+++|.-- .+. ...+.+.+.++.+++.+ +..+-|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 33556788999999999843 56999998531 111 11234667788888775 444444
No 334
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-16 Score=150.12 Aligned_cols=120 Identities=26% Similarity=0.373 Sum_probs=101.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-hhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~~~~~~l-R~~ 534 (599)
-++++|++.+-.+.+++|+++||+|++||+.||.||+|||||||.+.|+|. |++++|+|++||+||.++++++. |.-
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 478899988775435899999999999999999999999999999999996 58899999999999999999876 455
Q ss_pred ceeeCCCCCCchh-hHHHHhhcCCCC---------CCHHHHHHHHHHcCchHH
Q 007539 535 IGVVPQDTVLFND-TIFHNIRYGRLS---------ATEEEVYDAARRAAIHDT 577 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~~---------~sdeei~~A~~~a~l~d~ 577 (599)
|.+-+|.|.=+.| |+.+=++.+... ...+++.++++..++++.
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 135 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH
Confidence 9999999999988 788777644211 235678888888888873
No 335
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.3e-17 Score=149.49 Aligned_cols=122 Identities=21% Similarity=0.397 Sum_probs=100.7
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (599)
+.+|++..- ++..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.+++.... +.++.+-|+.
T Consensus 4 ~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~yLG 81 (209)
T COG4133 4 EAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALLYLG 81 (209)
T ss_pred hhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHHHhh
Confidence 445555433 45679999999999999999999999999999999999999999999999999987653 4577888888
Q ss_pred CCCCCc-hhhHHHHhhcCCC---CCCHHHHHHHHHHcCchHHHhcCcCc
Q 007539 540 QDTVLF-NDTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAK 584 (599)
Q Consensus 540 Qd~~LF-~gTIreNI~~g~~---~~sdeei~~A~~~a~l~d~I~~Lp~G 584 (599)
..+-+= .-|+.||+.|+.. ..+++.+++|++.++|.++ +++|-+
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~ 129 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVG 129 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchh
Confidence 888775 4599999999853 2567999999999999874 455543
No 336
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.69 E-value=9.1e-17 Score=178.90 Aligned_cols=105 Identities=28% Similarity=0.433 Sum_probs=85.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++ ++ .|+|
T Consensus 324 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~~ 391 (556)
T PRK11819 324 VIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLAY 391 (556)
T ss_pred EEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEEE
Confidence 599999999996 35799999999999999999999999999999999999999999999964 21 5999
Q ss_pred eCCCC-CCch-hhHHHHhhcCCC----CCCHHHHHHHHHHcCc
Q 007539 538 VPQDT-VLFN-DTIFHNIRYGRL----SATEEEVYDAARRAAI 574 (599)
Q Consensus 538 V~Qd~-~LF~-gTIreNI~~g~~----~~sdeei~~A~~~a~l 574 (599)
|||++ .++. -|++||+.++.. ...+++..++++..++
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l 434 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNF 434 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCC
Confidence 99997 5654 599999987532 1123344455665555
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=8.1e-17 Score=149.44 Aligned_cols=80 Identities=49% Similarity=0.772 Sum_probs=75.1
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (599)
+++|++|.|++ .++++++||+|++|+.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.....+++.++|++
T Consensus 1 ~~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 1 EIENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred CeEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 36899999964 47999999999999999999999999999999999999999999999999999887888899999999
Q ss_pred C
Q 007539 540 Q 540 (599)
Q Consensus 540 Q 540 (599)
|
T Consensus 80 q 80 (157)
T cd00267 80 Q 80 (157)
T ss_pred e
Confidence 9
No 338
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.68 E-value=9.6e-17 Score=161.38 Aligned_cols=104 Identities=22% Similarity=0.296 Sum_probs=79.7
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCch-hhHH
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIF 550 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~-gTIr 550 (599)
.++|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.+||. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 35899999999999999999999999999999999999999999999994 467788887664 6999
Q ss_pred HHhhcCC--CCCCHHHHH----HHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 551 HNIRYGR--LSATEEEVY----DAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 551 eNI~~g~--~~~sdeei~----~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||+.++. ...+.++.. ++++..++.+++.. ....||||
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G 147 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ-----------PVKKYSSG 147 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------CcccCCHH
Confidence 9997642 123344433 34555555554432 34567775
No 339
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.68 E-value=1.2e-16 Score=180.56 Aligned_cols=105 Identities=22% Similarity=0.431 Sum_probs=85.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+ |.++ .|+|
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAY 386 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEE
Confidence 599999999996 457999999999999999999999999999999999999999999999 4332 5999
Q ss_pred eCCCC-CCch-hhHHHHhhcCCCCC--C--HHHHHHHHHHcCc
Q 007539 538 VPQDT-VLFN-DTIFHNIRYGRLSA--T--EEEVYDAARRAAI 574 (599)
Q Consensus 538 V~Qd~-~LF~-gTIreNI~~g~~~~--s--deei~~A~~~a~l 574 (599)
++|++ .++. .|+.||+.++.+.. + ++++.+.++..++
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l 429 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLF 429 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCC
Confidence 99986 3554 49999998764322 2 3445555555554
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=99.68 E-value=1.2e-16 Score=180.72 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=88.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+|+|++++++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++ +..|+|
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igy 576 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAV 576 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEE
Confidence 699999999997556799999999999999999999999999999999999999999999876 246999
Q ss_pred eCCCCCCchhhHHHHhhc----CCCCCCHHHHHHHHHHcCchH
Q 007539 538 VPQDTVLFNDTIFHNIRY----GRLSATEEEVYDAARRAAIHD 576 (599)
Q Consensus 538 V~Qd~~LF~gTIreNI~~----g~~~~sdeei~~A~~~a~l~d 576 (599)
++|++. ...++.+|..+ ..+..+++++.++++..++.+
T Consensus 577 v~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~ 618 (718)
T PLN03073 577 FSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG 618 (718)
T ss_pred Eecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh
Confidence 999973 23345555321 123456788888999888864
No 341
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.67 E-value=1.6e-16 Score=169.27 Aligned_cols=123 Identities=28% Similarity=0.422 Sum_probs=98.0
Q ss_pred eEEEEEEEEeecCC-C--cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC----CceEEECCEeCCCCCHHH
Q 007539 458 SIQFDNVHFSYLTE-R--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH----SGSIRIDGQDICEVTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~-~--~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~----~G~I~idG~di~~~~~~~ 530 (599)
-++++|++..|... . ++++||||+|.+||.+||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 58999999999632 2 5999999999999999999999999999999999999988 899999999999999876
Q ss_pred Hh----hhceeeCCCCC-Cchh--hHHHHh----hcCCC---CCCHHHHHHHHHHcCchHHHhc
Q 007539 531 LR----KSIGVVPQDTV-LFND--TIFHNI----RYGRL---SATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 531 lR----~~i~~V~Qd~~-LF~g--TIreNI----~~g~~---~~sdeei~~A~~~a~l~d~I~~ 580 (599)
+| +.|+||+|||. .+|- ||.+-| ....+ +...++..+.++.+++.+-...
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh
Confidence 64 36999999986 6664 555555 33221 1234567777888887665444
No 342
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.67 E-value=1.2e-16 Score=176.08 Aligned_cols=92 Identities=18% Similarity=0.385 Sum_probs=80.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH-Hhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (599)
-|+++|++. .+|+|+||+|++|+++||+|+||||||||+++|+|+.+|++|+|.++|.++...+... +|+.|+
T Consensus 268 ~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 589999983 2699999999999999999999999999999999999999999999999998777654 456799
Q ss_pred eeCCCC---CCch-hhHHHHhhc
Q 007539 537 VVPQDT---VLFN-DTIFHNIRY 555 (599)
Q Consensus 537 ~V~Qd~---~LF~-gTIreNI~~ 555 (599)
||||++ .+|. .|+.||+..
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHh
Confidence 999986 3665 499999853
No 343
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.3e-16 Score=175.33 Aligned_cols=92 Identities=20% Similarity=0.361 Sum_probs=80.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH-HHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~-~lR~~i~ 536 (599)
.|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.++
T Consensus 250 ~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 250 ILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 59999999985 3599999999999999999999999999999999999999999999999999877654 4567799
Q ss_pred eeCCCCC---Cch-hhHHHH
Q 007539 537 VVPQDTV---LFN-DTIFHN 552 (599)
Q Consensus 537 ~V~Qd~~---LF~-gTIreN 552 (599)
|++|++. +|. .|+.+|
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred EcCCchhhCCcccCCcHHHh
Confidence 9999963 555 467666
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=2e-16 Score=176.14 Aligned_cols=105 Identities=27% Similarity=0.409 Sum_probs=85.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+.+|++|+|.+++ ++ .|+|
T Consensus 322 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~ 389 (552)
T TIGR03719 322 VIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLAY 389 (552)
T ss_pred EEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEEE
Confidence 5999999999963 5799999999999999999999999999999999999999999999965 21 5999
Q ss_pred eCCCCC-Cc-hhhHHHHhhcCCCC--CC--HHHHHHHHHHcCc
Q 007539 538 VPQDTV-LF-NDTIFHNIRYGRLS--AT--EEEVYDAARRAAI 574 (599)
Q Consensus 538 V~Qd~~-LF-~gTIreNI~~g~~~--~s--deei~~A~~~a~l 574 (599)
|+|++. ++ +.|++||+.++.+. .. +++..++++..++
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l 432 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNF 432 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCC
Confidence 999973 55 45999999886421 11 2334445555554
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.65 E-value=2.5e-16 Score=143.71 Aligned_cols=70 Identities=27% Similarity=0.551 Sum_probs=65.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
++++|++++|++ .++|+++||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. +.++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 478999999964 47999999999999999999999999999999999999999999999994 479999
Q ss_pred CC
Q 007539 539 PQ 540 (599)
Q Consensus 539 ~Q 540 (599)
+|
T Consensus 69 ~~ 70 (144)
T cd03221 69 EQ 70 (144)
T ss_pred cc
Confidence 99
No 346
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.2e-16 Score=149.41 Aligned_cols=96 Identities=31% Similarity=0.458 Sum_probs=85.4
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhc
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i 535 (599)
.-|+++||++.| +++++|+|||++|++||+-+|+|++|||||||++++.+.+.|++|.+.+-|+....-+. .++|++|
T Consensus 30 ~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 30 PLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred ceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 369999999999 46889999999999999999999999999999999999999999999999999988887 9999999
Q ss_pred eeeCCCC---CCchhhHHHHh
Q 007539 536 GVVPQDT---VLFNDTIFHNI 553 (599)
Q Consensus 536 ~~V~Qd~---~LF~gTIreNI 553 (599)
|+|+-+- +.=+.+++|=+
T Consensus 109 G~vS~~L~~~~~~~~~v~dvV 129 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVV 129 (257)
T ss_pred CccCHHHHhhcccccccceee
Confidence 9998533 33355676665
No 347
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.65 E-value=1.6e-16 Score=154.99 Aligned_cols=103 Identities=21% Similarity=0.300 Sum_probs=75.8
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-ECCEeCCCCCHHHHhhhceeeCCCCCCchh-hHHH
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFH 551 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~-idG~di~~~~~~~lR~~i~~V~Qd~~LF~g-TIre 551 (599)
+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 787543 13467788875 9999
Q ss_pred HhhcCCC--CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 552 NIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 552 NI~~g~~--~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||.+... ..+.++..+.+.. ...+++.+++.+++ ||||
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~----lS~G 108 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQ------LTQLEQCYTDRVSE----YSVT 108 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH------HhChhHHhhchHhh----cCHH
Confidence 9987421 2344444433321 22345555555543 5654
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.3e-15 Score=171.68 Aligned_cols=106 Identities=22% Similarity=0.380 Sum_probs=86.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 312 ~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY 379 (638)
T ss_pred eEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence 599999999995 467999999999999999999999999999999999999999999999741 26999
Q ss_pred eCCCC--CCc-hhhHHHHhhcCCCCCCHHHHHHHHHHcCch
Q 007539 538 VPQDT--VLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (599)
Q Consensus 538 V~Qd~--~LF-~gTIreNI~~g~~~~sdeei~~A~~~a~l~ 575 (599)
++|++ .+. +.|+.+|+.-..+...++++.+.++..++.
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~ 420 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQ 420 (638)
T ss_pred ecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCC
Confidence 99985 344 348899875323334456677777777663
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=99.64 E-value=4.6e-16 Score=173.01 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=88.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++ + .++|
T Consensus 340 ~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KISY 404 (590)
T ss_pred EEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eEEE
Confidence 5999999999964 35999999999999999999999999999999999999999999986 1 5999
Q ss_pred eCCCCCC-chhhHHHHhhcCCCCCC-HHHHHHHHHHcCchHHHh
Q 007539 538 VPQDTVL-FNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIM 579 (599)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~~s-deei~~A~~~a~l~d~I~ 579 (599)
+||++.+ ++.|++||+.++..... ++.+.++++..++.+...
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 448 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD 448 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh
Confidence 9999875 56799999987632222 344567777777765433
No 350
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=7.3e-16 Score=147.18 Aligned_cols=98 Identities=30% Similarity=0.409 Sum_probs=74.6
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHH
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIre 551 (599)
.++|+||||++++||++||||++|||||||+|+|+|.|+|++|+|.++|.--.-+.+ ..|+-| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 358999999999999999999999999999999999999999999999952211111 233333 358999
Q ss_pred HhhcCC--C----CCCHHHHHHHHHHcCchHHHhc
Q 007539 552 NIRYGR--L----SATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 552 NI~~g~--~----~~sdeei~~A~~~a~l~d~I~~ 580 (599)
||.+-. . ..-++.+.+..+-|+|.||+..
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~ 143 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ 143 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 996521 1 1235556777788889999864
No 351
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.61 E-value=4.8e-15 Score=149.45 Aligned_cols=122 Identities=28% Similarity=0.426 Sum_probs=99.8
Q ss_pred ceEEEEEEEEeecC--C--------CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 457 GSIQFDNVHFSYLT--E--------RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~--~--------~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
.-++.+||...|+- + -.+.+++||+.++||+++|||+||||||||...|+|+.+++ |+|.++|+++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 36889999999962 1 13789999999999999999999999999999999999766 9999999999999
Q ss_pred CHHH---HhhhceeeCCCCCC-c--hhhHHHHhhcC----CCCCC----HHHHHHHHHHcCchHHHh
Q 007539 527 TLES---LRKSIGVVPQDTVL-F--NDTIFHNIRYG----RLSAT----EEEVYDAARRAAIHDTIM 579 (599)
Q Consensus 527 ~~~~---lR~~i~~V~Qd~~L-F--~gTIreNI~~g----~~~~s----deei~~A~~~a~l~d~I~ 579 (599)
+.++ +|+.+-+|+|||+= + ..||.+=|.=| .|..+ |+.+.+|++.+|++.-..
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r 420 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR 420 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh
Confidence 9765 68899999999982 2 24666655443 45554 466889999999987554
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.61 E-value=6.1e-16 Score=187.15 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=93.5
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCch-
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF----DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN- 546 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly----~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~- 546 (599)
+++|+|+|+++++||.+||+||||||||||+|+|+|+. .|.+|+|.+||+++.+.+ ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 579999999999987654 346778999999988876
Q ss_pred hhHHHHhhcCC----C-----CCCHHHHH-----HHHHHcCchHHHhcCcCccccccccC-cccCCCC
Q 007539 547 DTIFHNIRYGR----L-----SATEEEVY-----DAARRAAIHDTIMNFPAKYSTVVGER-GLKIEGK 599 (599)
Q Consensus 547 gTIreNI~~g~----~-----~~sdeei~-----~A~~~a~l~d~I~~Lp~G~dT~vgE~-G~~LSG~ 599 (599)
-|++||+.++. | +.+.++.. ++++.. .|.+-.||.||+. ...||||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY-------GLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-------CcccccCceeCCCcCCCCCcc
Confidence 59999998752 1 13333322 233333 3445578889863 4679997
No 353
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=1.2e-15 Score=144.49 Aligned_cols=94 Identities=26% Similarity=0.596 Sum_probs=86.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.+++++|+-+|. ++.+++||||+++||+..+++|++|+||||.+++|+|+.+|++|+|.++|.+++. ..++.|||
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGY 76 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhccc
Confidence 478999999994 6789999999999999999999999999999999999999999999999998865 56789999
Q ss_pred eCCCCCCch-hhHHHHhhcC
Q 007539 538 VPQDTVLFN-DTIFHNIRYG 556 (599)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g 556 (599)
.|.|--|+. .|+.|-|.|.
T Consensus 77 LPEERGLy~k~tv~dql~yl 96 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYL 96 (300)
T ss_pred ChhhhccCccCcHHHHHHHH
Confidence 999999985 5999999885
No 354
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=1.3e-15 Score=169.64 Aligned_cols=133 Identities=32% Similarity=0.454 Sum_probs=105.2
Q ss_pred ceEEEEEEEEeecCC----CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC---CCceEEECCEeCCCCCHH
Q 007539 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~----~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p---~~G~I~idG~di~~~~~~ 529 (599)
-+++|+|++..-++. +.+|+|||.+++|||..||.||||||||||++.|+|-.++ .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 378999999988643 5799999999999999999999999999999999999975 7999999994 45678
Q ss_pred HHhhhceeeCCCCCCchh-hHHHHhhcCC----CC-CCHHH----HHHHHHHcCchHHHhcCcCccccccccC-cccCCC
Q 007539 530 SLRKSIGVVPQDTVLFND-TIFHNIRYGR----LS-ATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGER-GLKIEG 598 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~g-TIreNI~~g~----~~-~sdee----i~~A~~~a~l~d~I~~Lp~G~dT~vgE~-G~~LSG 598 (599)
.+++..|||+||..++.. ||+|++.|.. |. .+.+| |.+.++.-++.+ + =||.||.. +..+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCcccc
Confidence 899999999999998865 9999998752 22 24444 334444434431 1 57888753 357898
Q ss_pred C
Q 007539 599 K 599 (599)
Q Consensus 599 ~ 599 (599)
|
T Consensus 174 G 174 (613)
T KOG0061|consen 174 G 174 (613)
T ss_pred c
Confidence 7
No 355
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=1.3e-15 Score=183.72 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=74.5
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHHhhhceeeCCCCCCch-h
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-D 547 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~-g 547 (599)
+++|+|+|++|+||+.++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+.. .|+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999987654 3778999999987775 5
Q ss_pred hHHHHhhcC
Q 007539 548 TIFHNIRYG 556 (599)
Q Consensus 548 TIreNI~~g 556 (599)
|++||+.++
T Consensus 255 TV~EtL~f~ 263 (1470)
T PLN03140 255 TVKETLDFS 263 (1470)
T ss_pred cHHHHHHHH
Confidence 999999874
No 356
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=1.3e-15 Score=137.57 Aligned_cols=124 Identities=32% Similarity=0.499 Sum_probs=98.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----------C
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----------T 527 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~----------~ 527 (599)
.++.+|+..+|. ...||++|||+-++|+.+.|+|.|||||||+++++.=|-.|++|+|.++|..|+-- +
T Consensus 6 ~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 688999999995 34699999999999999999999999999999999999999999999999876422 1
Q ss_pred ---HHHHhhhceeeCCCCCCch-hhHHHHhhc------CCCCC-CHHHHHHHHHHcCchHHHhcCc
Q 007539 528 ---LESLRKSIGVVPQDTVLFN-DTIFHNIRY------GRLSA-TEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 528 ---~~~lR~~i~~V~Qd~~LF~-gTIreNI~~------g~~~~-sdeei~~A~~~a~l~d~I~~Lp 582 (599)
.+.+|...++|+|...|++ .|+.||+.= |.+.. .-|.-+.-+.++++.|--+.-|
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP 150 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP 150 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc
Confidence 4567889999999999985 699999843 32211 1123334456677776555544
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.59 E-value=6.3e-16 Score=171.92 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=88.0
Q ss_pred EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCEeCCCCCHHH
Q 007539 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLES 530 (599)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~-----------idG~di~~~~~~~ 530 (599)
++++++|.+...+|++++ ++++|+++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..+.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 458999975557999999 9999999999999999999999999999999999997 9999887653211
Q ss_pred --Hhhh----ceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHH
Q 007539 531 --LRKS----IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577 (599)
Q Consensus 531 --lR~~----i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~ 577 (599)
.+.. +.|++|.|.+|.+|++||+...+ ..+++.++++..++.+.
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l~~~ 205 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGLENI 205 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCCchh
Confidence 1122 44556677788899999997531 24567777777776543
No 358
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.9e-15 Score=167.85 Aligned_cols=83 Identities=28% Similarity=0.438 Sum_probs=70.9
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|+ ++++|+|+||+|++|+++||||+||||||||+++|+|+++|++|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWV 69 (638)
T ss_pred EEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEE
Confidence 78999999995 4679999999999999999999999999999999999999999999999842 37778
Q ss_pred CCCCCCchhhHHHHh
Q 007539 539 PQDTVLFNDTIFHNI 553 (599)
Q Consensus 539 ~Qd~~LF~gTIreNI 553 (599)
+|++..+..|+.+.+
T Consensus 70 ~q~~~~~~~~~~~~v 84 (638)
T PRK10636 70 NQETPALPQPALEYV 84 (638)
T ss_pred ecCCCCCCCCHHHHH
Confidence 876554545555544
No 359
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.59 E-value=1.2e-15 Score=158.30 Aligned_cols=91 Identities=33% Similarity=0.480 Sum_probs=74.2
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchh-hHHHHhhcCCC--CCC----H
Q 007539 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRL--SAT----E 562 (599)
Q Consensus 490 IVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~s----d 562 (599)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||+|++.+|.. |++||+.++.. ..+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999965 99999998631 122 2
Q ss_pred HHHHHHHHHcCchHHHhcCc
Q 007539 563 EEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 563 eei~~A~~~a~l~d~I~~Lp 582 (599)
+++.++++..++.++..+.|
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~ 98 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP 98 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh
Confidence 45677778777766655544
No 360
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.58 E-value=3.5e-15 Score=135.11 Aligned_cols=103 Identities=24% Similarity=0.359 Sum_probs=84.7
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCC-Cch-----
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV-LFN----- 546 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~-LF~----- 546 (599)
.+.+.|||++++|+++||+|.+|||||||+|+|+|..+|++|+|++||+++.-=+.+...++|-+++|||. -||
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 47899999999999999999999999999999999999999999999999987777777788999999985 233
Q ss_pred -----hhHHHHhhcCCCCCCHHHHHHHHHHcCchH
Q 007539 547 -----DTIFHNIRYGRLSATEEEVYDAARRAAIHD 576 (599)
Q Consensus 547 -----gTIreNI~~g~~~~sdeei~~A~~~a~l~d 576 (599)
+.++-|-.+ +|+.-.+++.+.++.+|+..
T Consensus 107 GqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL~P 140 (267)
T COG4167 107 GQILDFPLRLNTDL-EPEQRRKQIFETLRMVGLLP 140 (267)
T ss_pred hhHhcchhhhcccC-ChHHHHHHHHHHHHHhccCc
Confidence 233333222 23455678999999998743
No 361
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.58 E-value=2.2e-15 Score=141.76 Aligned_cols=68 Identities=25% Similarity=0.257 Sum_probs=61.8
Q ss_pred EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCC
Q 007539 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (599)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd 541 (599)
.||+++|+ +.++++++ |+|++||+++|+||||||||||+++|+|+++|++|+|.+||.+ ++|++|+
T Consensus 4 ~~l~~~~~-~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYG-VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEEC-CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 58899995 45788884 9999999999999999999999999999999999999999963 8899998
Q ss_pred CC
Q 007539 542 TV 543 (599)
Q Consensus 542 ~~ 543 (599)
+.
T Consensus 70 ~~ 71 (177)
T cd03222 70 ID 71 (177)
T ss_pred CC
Confidence 76
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.57 E-value=2.6e-14 Score=155.25 Aligned_cols=109 Identities=30% Similarity=0.458 Sum_probs=95.4
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
.-++++|++++|++++++++++||.|++|+++|||||+|+|||||+|+|+|...|.+|+|.++-. -++|
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ig 388 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIG 388 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEE
Confidence 46999999999976678999999999999999999999999999999999999999999988642 2599
Q ss_pred eeCCCC-CCc-hhhHHHHhhcCCCCCCHHHHHHHHHHcCchH
Q 007539 537 VVPQDT-VLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHD 576 (599)
Q Consensus 537 ~V~Qd~-~LF-~gTIreNI~~g~~~~sdeei~~A~~~a~l~d 576 (599)
|.+|+. .++ +.|+.|++.-+.|+..+.++...+...++..
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Confidence 999998 444 3489999988877767889999999887754
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.57 E-value=5.6e-15 Score=160.40 Aligned_cols=89 Identities=27% Similarity=0.514 Sum_probs=81.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++|++++| +++++++|+||++.+|+++||||++|+|||||+|+|+|..+|++|+|..++. -.|+|
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~ 70 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGY 70 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEE
Confidence 58999999999 5788999999999999999999999999999999999999999999998762 15999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL 558 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~ 558 (599)
++|++.+.+. |++|.+..+..
T Consensus 71 l~Q~~~~~~~~tv~~~v~~~~~ 92 (530)
T COG0488 71 LSQEPPLDPEKTVLDYVIEGFG 92 (530)
T ss_pred eCCCCCcCCCccHHHHHHhhhH
Confidence 9999999966 99999987753
No 364
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=5.2e-15 Score=135.57 Aligned_cols=119 Identities=22% Similarity=0.393 Sum_probs=100.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC-EeCCCCCHHHH-hhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG-QDICEVTLESL-RKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG-~di~~~~~~~l-R~~i 535 (599)
-++++||+.+++ +-.+|+|+||++.+||.=+|+||+|+||||++..|.|--+|++|+++++| .|+..++.... |.-|
T Consensus 5 iL~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 578899999985 45699999999999999999999999999999999999999999999999 99999997776 4459
Q ss_pred eeeCCCCCCchh-hHHHHhhcCCC-------------C-CCHHHHHHHHHHcCchHH
Q 007539 536 GVVPQDTVLFND-TIFHNIRYGRL-------------S-ATEEEVYDAARRAAIHDT 577 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~-------------~-~sdeei~~A~~~a~l~d~ 577 (599)
|==+|.|..|.. |++||+.+... . ...+++.+.+...+|.+-
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~ 140 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh
Confidence 999999999976 99999976521 1 122357777777777653
No 365
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.52 E-value=3.5e-14 Score=160.47 Aligned_cols=84 Identities=21% Similarity=0.387 Sum_probs=69.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|+ ++++|+|+||+|++|+++||||+||||||||+++|+|+++|++|+|.++|.. .+++
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVAR 70 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEE
Confidence 489999999996 4679999999999999999999999999999999999999999999998731 2567
Q ss_pred eCCCCCC-chhhHHHHh
Q 007539 538 VPQDTVL-FNDTIFHNI 553 (599)
Q Consensus 538 V~Qd~~L-F~gTIreNI 553 (599)
++|++.. ..+++.+++
T Consensus 71 l~q~~~~~~~~~v~~~~ 87 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFV 87 (635)
T ss_pred eccCCCCCCCCCHHHHH
Confidence 7776532 224555544
No 366
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.52 E-value=3.2e-14 Score=126.34 Aligned_cols=124 Identities=26% Similarity=0.436 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE--eCCCCC----HHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ--DICEVT----LESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~--di~~~~----~~~l 531 (599)
.|+++|++|.|. ...+|-||+|+.+.|+++.+.||||+|||||++.|.=+--|.+|+..|-|. |.++.+ ...+
T Consensus 2 sirv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 589999999996 456999999999999999999999999999999999999999999999775 333333 4579
Q ss_pred hhhceeeCCCCCCch-hhHHHHhhcCC---CCCCH----HHHHHHHHHcCchHHHhcCc
Q 007539 532 RKSIGVVPQDTVLFN-DTIFHNIRYGR---LSATE----EEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~-gTIreNI~~g~---~~~sd----eei~~A~~~a~l~d~I~~Lp 582 (599)
|+.+|+|+|.-.|+. -|+.||+.=.- -..++ .+-.+.++...+.++-+.+|
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p 139 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP 139 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc
Confidence 999999999999984 69999985321 01233 23445566678888888877
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.42 E-value=1.8e-13 Score=155.17 Aligned_cols=96 Identities=23% Similarity=0.256 Sum_probs=75.2
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEECCEeCCC--CCH---
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSIRIDGQDICE--VTL--- 528 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly---~p~~G~I~idG~di~~--~~~--- 528 (599)
..|+++|++|+|+ ++++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 3699999999996 456999999999999999999999999999999999864 5899999865554321 111
Q ss_pred ---------HHHhhhceeeCCCCCCchhhHHHHh
Q 007539 529 ---------ESLRKSIGVVPQDTVLFNDTIFHNI 553 (599)
Q Consensus 529 ---------~~lR~~i~~V~Qd~~LF~gTIreNI 553 (599)
..+++.+++++|++.+...+..+|.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~ 288 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKG 288 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1235668999998876554555554
No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.41 E-value=2.7e-13 Score=127.42 Aligned_cols=61 Identities=26% Similarity=0.308 Sum_probs=50.9
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCC
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 540 (599)
..++|+|+||+|++|++++|+||||||||||+++++ +++|+|.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH
Confidence 357999999999999999999999999999999986 379999998762 221 2446888888
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=8.3e-13 Score=118.47 Aligned_cols=84 Identities=33% Similarity=0.486 Sum_probs=67.5
Q ss_pred eEEEEEEEEeec----CC--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC----EeCCCCC
Q 007539 458 SIQFDNVHFSYL----TE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG----QDICEVT 527 (599)
Q Consensus 458 ~I~f~nVsF~Y~----~~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG----~di~~~~ 527 (599)
.+..+||+.++. ++ -||++|+||+++.||++++-||||||||||++.|-+-|.|++|+|.+-. +|+-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 467788866653 22 3899999999999999999999999999999999999999999999853 3444444
Q ss_pred HHH----HhhhceeeCCC
Q 007539 528 LES----LRKSIGVVPQD 541 (599)
Q Consensus 528 ~~~----lR~~i~~V~Qd 541 (599)
+.+ .|+.||||+|-
T Consensus 84 pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 84 PREVLEVRRTTIGYVSQF 101 (235)
T ss_pred hHHHHHHHHhhhHHHHHH
Confidence 332 35569999994
No 370
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.33 E-value=2.2e-12 Score=130.51 Aligned_cols=119 Identities=27% Similarity=0.446 Sum_probs=96.0
Q ss_pred eEEEEEEEEeec--C-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCCHH
Q 007539 458 SIQFDNVHFSYL--T-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLE 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~--~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~~~~~ 529 (599)
-++++|++.+|. + ...++++|||+|++||++|+||+||||||--++.++|+++- .+|+|.+||.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478889888875 2 34799999999999999999999999999999999999854 478999999999999988
Q ss_pred HHhh----hceeeCCCCCC-ch------hhHHHHhhcCC---CCCCHHHHHHHHHHcCchH
Q 007539 530 SLRK----SIGVVPQDTVL-FN------DTIFHNIRYGR---LSATEEEVYDAARRAAIHD 576 (599)
Q Consensus 530 ~lR~----~i~~V~Qd~~L-F~------gTIreNI~~g~---~~~sdeei~~A~~~a~l~d 576 (599)
.+|+ .|++|+|||.- .| .-|.|-|.+.+ ..+-.+++.+.++.+++.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~ 146 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE 146 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc
Confidence 8886 79999999962 22 23555555543 1244677888888888765
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.3e-12 Score=117.51 Aligned_cols=85 Identities=27% Similarity=0.390 Sum_probs=71.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC-----EeCCCCCHHH--
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG-----QDICEVTLES-- 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG-----~di~~~~~~~-- 530 (599)
-+++.++|..|.+ ..-.+|+||++.|||..+|||+||||||||+++|.+-..|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 6 LLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred ceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 4788899999964 3578999999999999999999999999999999999999999998865 3444444443
Q ss_pred --HhhhceeeCCCCC
Q 007539 531 --LRKSIGVVPQDTV 543 (599)
Q Consensus 531 --lR~~i~~V~Qd~~ 543 (599)
+|..-|+|.|+|-
T Consensus 85 ~L~RTeWG~VhQnP~ 99 (258)
T COG4107 85 RLLRTEWGFVHQNPR 99 (258)
T ss_pred HHhhhccceeecCcc
Confidence 3456799999985
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.31 E-value=3e-12 Score=115.47 Aligned_cols=124 Identities=27% Similarity=0.357 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
+.++||+-+ .-|-.+|.++.+||.+=+|||+|||||||+.-++|+. |-+|+|.++|.|++.++..++-++=+|.
T Consensus 4 ~qln~v~~~-----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 4 MQLNDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeecccccc-----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 566777532 2366789999999999999999999999999999987 7999999999999999999999999998
Q ss_pred CCCC-CCchhhHHHHhhcCCCCCC-HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 539 PQDT-VLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 539 ~Qd~-~LF~gTIreNI~~g~~~~s-deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
.|+. ..|...+..-+++..|+-+ -+++.+.|.+.+++| .++..-..||||
T Consensus 78 sQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGG 129 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGG 129 (248)
T ss_pred hhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcc
Confidence 8755 5899999999999887522 245666666655554 333344567775
No 373
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.30 E-value=1.8e-12 Score=125.00 Aligned_cols=66 Identities=35% Similarity=0.606 Sum_probs=56.6
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (599)
++.+||||+||||++++++|++|+||||++|+|.|+..|++|.|.++|.+=.+- .+++-+++++|.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~ 103 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVM 103 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHh
Confidence 488999999999999999999999999999999999999999999999876653 334444565553
No 374
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.30 E-value=6.3e-12 Score=146.40 Aligned_cols=124 Identities=23% Similarity=0.397 Sum_probs=103.0
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC-CHHHHhhhc
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV-TLESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~-~~~~lR~~i 535 (599)
..+..+|++..|+....+.+++|+.+++||+.++-|++||||||.+|++.|...|++|++.++|.++..- +.+..|+++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4688999999997544499999999999999999999999999999999999999999999999999764 455699999
Q ss_pred eeeCCCCCCchh-hHHHHhhcCC-----CCCC-HHHHHHHHHHcCchHHHhc
Q 007539 536 GVVPQDTVLFND-TIFHNIRYGR-----LSAT-EEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~-----~~~s-deei~~A~~~a~l~d~I~~ 580 (599)
||+||+..|++. |.||.+.+.. |..+ ++.+.+.++..++.+....
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~ 694 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK 694 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc
Confidence 999999999876 9999996642 2112 2446777777777665443
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.23 E-value=9e-12 Score=130.43 Aligned_cols=114 Identities=21% Similarity=0.304 Sum_probs=92.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|.++||+|+|+++..+++++||-|..++++|+|||+|+|||||+|++.|...|+.|.|.-.-+ .++++
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~~ 457 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLPR 457 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccchh
Confidence 6999999999987768999999999999999999999999999999999999999999965432 23444
Q ss_pred eCC---CCCCchhhHHHHhhcCCC-CCCHHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQ---DTVLFNDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Q---d~~LF~gTIreNI~~g~~-~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
-.| |..-++.|.-|++.---+ .-..|++...+...|+......-|
T Consensus 458 y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p 506 (614)
T KOG0927|consen 458 YNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP 506 (614)
T ss_pred hhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc
Confidence 444 445678888999854434 356788999999999986554444
No 376
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.20 E-value=2.8e-11 Score=138.94 Aligned_cols=117 Identities=26% Similarity=0.342 Sum_probs=92.7
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEECCEeCCCCCHHHHhhhceeeCCCC-CCchhh
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--THSGSIRIDGQDICEVTLESLRKSIGVVPQDT-VLFNDT 548 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~--p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~-~LF~gT 548 (599)
+.+|+||+=-++||..+|++|+||||||||++.|+|=-. ..+|+|+|||.+..+ +..++.+|||.|+. ++=.-|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccc
Confidence 469999999999999999999999999999999998543 367999999999875 78999999999855 677789
Q ss_pred HHHHhhcCC-----CCCCHHH----HHHHHHHcCchHHHhcCcCccccccccCcccCCC
Q 007539 549 IFHNIRYGR-----LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598 (599)
Q Consensus 549 IreNI~~g~-----~~~sdee----i~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG 598 (599)
|||-+.|.. .+++++| ++++.+..++.+. =|..||.-|..||.
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~ 932 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLST 932 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCH
Confidence 999998862 2455544 4555555555433 35568887877774
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.20 E-value=2.1e-10 Score=119.71 Aligned_cols=101 Identities=24% Similarity=0.414 Sum_probs=89.7
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC-CCCCHHHHhhh-
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI-CEVTLESLRKS- 534 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di-~~~~~~~lR~~- 534 (599)
.-++++|++..=+.+.+.+++|||++++||+++|.|-+|-|-+-|+.+|+|+..|.+|+|.++|+|+ ...+...+|+.
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G 335 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLG 335 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcC
Confidence 3689999997654445789999999999999999999999999999999999999999999999997 67788887775
Q ss_pred ceeeCCCCC----CchhhHHHHhhcCC
Q 007539 535 IGVVPQDTV----LFNDTIFHNIRYGR 557 (599)
Q Consensus 535 i~~V~Qd~~----LF~gTIreNI~~g~ 557 (599)
++|||.|-+ ..+-|+.||+.++.
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~ 362 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGR 362 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhh
Confidence 999999884 67889999998875
No 378
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.17 E-value=2e-11 Score=128.36 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=57.4
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
++|++||+++++||.++|+||||||||||++ .++.+|++| +|.+||+++.+.+.+.++..= +|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5899999999999999999999999999999 788888888 799999999887755543322 888864
No 379
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.14 E-value=1.8e-11 Score=117.76 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=56.0
Q ss_pred ccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---------CceEEECCEeCCCCCHHHHhhhceeeCCCCCCc
Q 007539 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---------SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545 (599)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~---------~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF 545 (599)
+++++++++| .++|+||||||||||+++|.++..|. .|++.++|.++... ..+++|++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc
Confidence 5789999999 99999999999999999999998665 34688888876542 2467899999999988
No 380
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.10 E-value=2.6e-10 Score=118.25 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccc-----------cceeEeeCCCEEEEEcCC
Q 007539 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILD-----------GVSFVVPAGKSVAIVGTS 494 (599)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~-----------~isl~I~~G~~vaIVG~S 494 (599)
+..+.+|++++++.++.... .+ ....+.|+|+||+|.||+++++|+ |+++.|.+||+++|||++
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~----~~-e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~ 177 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGD----DP-EKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPP 177 (415)
T ss_pred ccccHhHHHHHhCCCccCCC----Cc-cccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCC
Confidence 44567899999987654211 11 123468999999999998778997 999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCC--ceEEECCEeCCCCCHHHHhhhc
Q 007539 495 GSGKSTILRLLFRSFDTHS--GSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 495 GSGKSTL~~LL~gly~p~~--G~I~idG~di~~~~~~~lR~~i 535 (599)
|+|||||+++|.+.+.... ..+.+--++-+..+..++.+.+
T Consensus 178 g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 178 KAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred CCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh
Confidence 9999999999999886541 2232222222224555555554
No 381
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.08 E-value=5.5e-11 Score=118.52 Aligned_cols=124 Identities=21% Similarity=0.278 Sum_probs=79.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh----------------cCCCCCCc-------
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF----------------RSFDTHSG------- 514 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~----------------gly~p~~G------- 514 (599)
+|+++|.- +|. +..++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 3 QVIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 46666531 353 456778876 8999999999999999999998 44555566
Q ss_pred -eEEECCEeCCCC---CHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHH--hcCcCcccc-
Q 007539 515 -SIRIDGQDICEV---TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI--MNFPAKYST- 587 (599)
Q Consensus 515 -~I~idG~di~~~---~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I--~~Lp~G~dT- 587 (599)
+|.+++.+-... +...+++.+++++|++.++. ..++.++++.+++..++.+.- ..+|+|..+
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 666655322110 12235666888887765532 246778888888888765421 112343322
Q ss_pred ------ccccCcccCCCC
Q 007539 588 ------VVGERGLKIEGK 599 (599)
Q Consensus 588 ------~vgE~G~~LSG~ 599 (599)
...+.+..||||
T Consensus 145 l~~l~~~~~~~~~~lS~G 162 (243)
T cd03272 145 LTNMKQDEQQEMQQLSGG 162 (243)
T ss_pred hhhccccccccccccCHH
Confidence 235677889986
No 382
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.04 E-value=3.3e-10 Score=105.00 Aligned_cols=67 Identities=25% Similarity=0.492 Sum_probs=62.7
Q ss_pred CceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 007539 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d 522 (599)
...|++.++.|+|+...|++-|+|+++|+|+..-+||.+|||||||+|+|.|-.-.-.|.|.+.|.+
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrs 77 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRS 77 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcC
Confidence 3589999999999977799999999999999999999999999999999999988888999999975
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.02 E-value=5.4e-11 Score=116.10 Aligned_cols=120 Identities=14% Similarity=0.148 Sum_probs=79.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEee-CCCEEEEEcCCCCcHHHHHHHHh-cCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVP-AGKSVAIVGTSGSGKSTILRLLF-RSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~-~G~~vaIVG~SGSGKSTL~~LL~-gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
.|+++|+. +|.+. ++|+|+.. +|++++|+|+||||||||+++|. .+|.+..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 68999987 77533 46677654 58999999999999999999999 4777777766654 223344445667789
Q ss_pred eeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCc-cccccccCcccCCCC
Q 007539 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK-YSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G-~dT~vgE~G~~LSG~ 599 (599)
++++|++. ....+++++ ..+.++..+... ++.| +++.+.....+||||
T Consensus 79 ~~~f~~~~----~~~~~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G 127 (213)
T cd03279 79 SFTFQLGG----KKYRVERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGG 127 (213)
T ss_pred EEEEEECC----eEEEEEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHH
Confidence 99999983 222333443 456665554331 1222 344445566678775
No 384
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.92 E-value=6e-10 Score=108.02 Aligned_cols=79 Identities=29% Similarity=0.438 Sum_probs=65.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHH
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIr 550 (599)
++|+.++|+||||||||||+++|++.++ |..|+ +||.|+..++.+++++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 88899 699999999999988854 588888888888
Q ss_pred HHhhcCCCCCCHHHHHHHHH
Q 007539 551 HNIRYGRLSATEEEVYDAAR 570 (599)
Q Consensus 551 eNI~~g~~~~sdeei~~A~~ 570 (599)
+|. ||. +.+++.++++
T Consensus 78 ~~~-y~~---~~~~i~~~l~ 93 (205)
T PRK00300 78 GNY-YGT---PRSPVEEALA 93 (205)
T ss_pred Ccc-ccC---cHHHHHHHHH
Confidence 883 653 3555555543
No 385
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.91 E-value=5.8e-10 Score=111.34 Aligned_cols=117 Identities=16% Similarity=0.242 Sum_probs=71.8
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh-----c-CC----CCCCc-----------eEEECCEeCCCCCHHH-
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-----R-SF----DTHSG-----------SIRIDGQDICEVTLES- 530 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~-----g-ly----~p~~G-----------~I~idG~di~~~~~~~- 530 (599)
..|+|+|++||.|+.++|+|.||||||||++-++ + +. .|..+ -|.+|..+|..-+...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4799999999999999999999999999998553 1 22 13222 3666666664422211
Q ss_pred ---------Hhh----------------hceeeCCCCC-CchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCc
Q 007539 531 ---------LRK----------------SIGVVPQDTV-LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (599)
Q Consensus 531 ---------lR~----------------~i~~V~Qd~~-LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G 584 (599)
+|+ .+.|..++.. +.+-|+.||+.+.......++..++++..++.+.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l------- 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI------- 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh-------
Confidence 111 1445555554 3455888888776432223444555555544321
Q ss_pred cccccccCcccCCCC
Q 007539 585 YSTVVGERGLKIEGK 599 (599)
Q Consensus 585 ~dT~vgE~G~~LSG~ 599 (599)
.+++....||||
T Consensus 162 ---~l~~~~~~LSgG 173 (261)
T cd03271 162 ---KLGQPATTLSGG 173 (261)
T ss_pred ---hhcCccccCCHH
Confidence 356666788886
No 386
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.3e-09 Score=111.26 Aligned_cols=63 Identities=30% Similarity=0.612 Sum_probs=58.7
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (599)
.-+-+.||+|.|++.+|.+++++|-|.--++||||||+|.|||||++||.|-++|++|+.+-+
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN 647 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc
Confidence 457789999999988899999999999999999999999999999999999999999987644
No 387
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.89 E-value=4.7e-09 Score=111.88 Aligned_cols=133 Identities=23% Similarity=0.348 Sum_probs=99.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH-HHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~-~lR~~i~ 536 (599)
.++++|++.. ..++|+||++++||+++|.|--|||+|-+++.|.|..++.+|+|.+||++++--++. ..+.-|+
T Consensus 263 ~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 263 VLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred EEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 5778887632 258899999999999999999999999999999999989999999999998877754 7788899
Q ss_pred eeCCCCC----CchhhHHHHhhcCCC-CCCHH-HHHHHHHHcCchHHHhcCcC---ccccccccCcccCCCC
Q 007539 537 VVPQDTV----LFNDTIFHNIRYGRL-SATEE-EVYDAARRAAIHDTIMNFPA---KYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~----LF~gTIreNI~~g~~-~~sde-ei~~A~~~a~l~d~I~~Lp~---G~dT~vgE~G~~LSG~ 599 (599)
|||-|=- +...||++||.+..- ..+.. -+.++.+.+-+.+++.+|.- +.++++ .+||||
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGG 405 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGG 405 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCch
Confidence 9998643 557799999988621 11100 23344444455566766542 233444 468987
No 388
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.87 E-value=2.7e-09 Score=105.04 Aligned_cols=33 Identities=39% Similarity=0.576 Sum_probs=30.7
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
.+.++|+|+||+|++||++||+|+||||||||+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 345799999999999999999999999999996
No 389
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.84 E-value=4.3e-09 Score=111.48 Aligned_cols=97 Identities=26% Similarity=0.345 Sum_probs=79.2
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC---CEeCCCCCHHHH--
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID---GQDICEVTLESL-- 531 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~id---G~di~~~~~~~l-- 531 (599)
+.++.++++..|..+..+++.++ +|.+||+++|+|+||||||||++.|+|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 46899999999987778999986 999999999999999999999999999999999999885 566666554433
Q ss_pred --hhhceeeCCCCC---------CchhhHHHHhh
Q 007539 532 --RKSIGVVPQDTV---------LFNDTIFHNIR 554 (599)
Q Consensus 532 --R~~i~~V~Qd~~---------LF~gTIreNI~ 554 (599)
++.|++|+|... ...-||.|..+
T Consensus 217 ~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 217 NLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred hhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999654 12346777764
No 390
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.84 E-value=7.9e-05 Score=78.66 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007539 382 MVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEE 439 (599)
Q Consensus 382 ~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 439 (599)
.++.+-....|++|.|.+......+.++...++.+.+.+.++.+-.+..+|+.++.+.
T Consensus 338 ~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 338 LFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566779999999999999999999999999999999999999999999988654
No 391
>PRK12369 putative transporter; Reviewed
Probab=98.79 E-value=0.00012 Score=75.67 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007539 382 MVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLE 438 (599)
Q Consensus 382 ~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 438 (599)
.++.+-....|+++.|.+......+.++...++.+...+.++.+-.+.++|+.++.+
T Consensus 264 ~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 264 YLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677999999999999999999999999999999999999999999988754
No 392
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.79 E-value=1.7e-10 Score=129.97 Aligned_cols=164 Identities=12% Similarity=0.125 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhccHHHHHHhhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007539 316 NDASTRAIDSLINYETVKYFNNEAFEAEQY-----DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL 390 (599)
Q Consensus 316 ~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 390 (599)
....+.+.|.+.++.+||..+.|+.....| .....+..+...+..........+...+......+++++|++.++
T Consensus 40 ~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~ 119 (644)
T PRK10733 40 EVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFF 119 (644)
T ss_pred HHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999999887766666 444444444433332222222222223334445566678889999
Q ss_pred cCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEe
Q 007539 391 SGEMTVG---DLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFS 467 (599)
Q Consensus 391 ~g~lt~G---~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~ 467 (599)
.|.++.| .+++|..+...+..| ..+...+.++.......+++.++.+...+..
T Consensus 120 ~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~----------------------- 175 (644)
T PRK10733 120 MRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS----------------------- 175 (644)
T ss_pred HhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH-----------------------
Confidence 9999998 777777776666666 5555556666655566666666554321100
Q ss_pred ecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
..+++...+++| +.|+||+|+||||+++.+++....
T Consensus 176 ------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 176 ------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred ------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 001222356677 999999999999999999986643
No 393
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.75 E-value=1e-08 Score=102.88 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=57.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHHhhhceeeCCCCCCchhhHHHH
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGVVPQDTVLFNDTIFHN 552 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~-~~~lR~~i~~V~Qd~~LF~gTIreN 552 (599)
+.++|+|++|||||||++.|+|++.|++|+|.+||.++..++ ..++...++++||+..--..++.||
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 689999999999999999999999999999999999998775 5788888999999764333344443
No 394
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.74 E-value=0.00011 Score=74.76 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-ccChh---hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 196 NELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHL-SRETG---ALNRIIDRGSRAINFILSSMVFNVVPTILEISMVS 271 (599)
Q Consensus 196 ~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~-~~~~G---~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 271 (599)
.....++...++.+....+.+.+.++.++-. .||. +...+ .--+|+++|.+..-.....+...++..+++++...
T Consensus 83 ~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~ 161 (281)
T PF06472_consen 83 NSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFS 161 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666777777777777777766 5554 22223 33467777766654444455555666655554444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHH
Q 007539 272 GILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (599)
Q Consensus 272 ~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~ 351 (599)
.++.-..++...|.+++..++...+...+.+...+...+.++..++..........+-+.|-.++.|+.+.++.++..++
T Consensus 162 ~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~ 241 (281)
T PF06472_consen 162 VILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDA 241 (281)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHH
Confidence 33322222211122222223333333444444444444445555566667778888999999999999999988887777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007539 352 YEDAALKTQRSLAFLNF 368 (599)
Q Consensus 352 ~~~~~~~~~~~~~~~~~ 368 (599)
..+...+..+.....+.
T Consensus 242 l~~~~~~~~~~~~~~~~ 258 (281)
T PF06472_consen 242 LIDNWRRLIRRRLRLGF 258 (281)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66665554444444433
No 395
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.71 E-value=4.2e-09 Score=105.52 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCE-eCCCCC--HHHHhhhceeeCCCCCC---------c-hhhHH
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQ-DICEVT--LESLRKSIGVVPQDTVL---------F-NDTIF 550 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~-di~~~~--~~~lR~~i~~V~Qd~~L---------F-~gTIr 550 (599)
...++||||||||||||++.|+++..|+ .|+++..|. |+-... ....+..+++++|++.. . .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6699999999999999999999999886 568888876 432111 11234589999999632 1 45788
Q ss_pred HHhhcCC--------CCCCHHHHHHHHHHcCch
Q 007539 551 HNIRYGR--------LSATEEEVYDAARRAAIH 575 (599)
Q Consensus 551 eNI~~g~--------~~~sdeei~~A~~~a~l~ 575 (599)
+||..+. .....+++.++++.+++.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~ 137 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLN 137 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCC
Confidence 7775542 123457888899988874
No 396
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.70 E-value=7.2e-09 Score=100.29 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=56.4
Q ss_pred ceeEeeCCCEEEEEcCCCCcHHHHHHHH----hcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCC-----CCch-h
Q 007539 478 VSFVVPAGKSVAIVGTSGSGKSTILRLL----FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-----VLFN-D 547 (599)
Q Consensus 478 isl~I~~G~~vaIVG~SGSGKSTL~~LL----~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~-----~LF~-g 547 (599)
.++++.+| +++|+|+||||||||++.| .|...|..|.+..+...+ .....+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34667788 9999999999999999998 498888888776222222 2234566899999998 4333 2
Q ss_pred hHHHHhhcC
Q 007539 548 TIFHNIRYG 556 (599)
Q Consensus 548 TIreNI~~g 556 (599)
|+.||+.++
T Consensus 92 ~~~~~~~~~ 100 (204)
T cd03240 92 AILENVIFC 100 (204)
T ss_pred hHhhceeee
Confidence 999999875
No 397
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.70 E-value=2.1e-08 Score=95.62 Aligned_cols=96 Identities=21% Similarity=0.198 Sum_probs=68.1
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCC--Cc-hhhHH
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV--LF-NDTIF 550 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~--LF-~gTIr 550 (599)
..+=+.+.+++|+.++|+|++||||||+++.|+++++|+.|.|.+.+.+--.++ .++.++++.|+.. .+ .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455567889999999999999999999999999999999999999775433322 2345667666543 22 34777
Q ss_pred HHhhcC---CCC------CCHHHHHHHHHHc
Q 007539 551 HNIRYG---RLS------ATEEEVYDAARRA 572 (599)
Q Consensus 551 eNI~~g---~~~------~sdeei~~A~~~a 572 (599)
+++... +|+ +.++|.+++++.+
T Consensus 91 ~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred HHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 777442 343 3445566666654
No 398
>PRK01889 GTPase RsgA; Reviewed
Probab=98.69 E-value=1.4e-08 Score=106.44 Aligned_cols=100 Identities=22% Similarity=0.338 Sum_probs=78.2
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHh
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI 553 (599)
-++.+.-.+++|++++|||+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|+.++|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566666788999999999999999999999999999999999998754322 2345689999999999998888888
Q ss_pred hcCCCCC----CHHHHHHHHHHcCchH
Q 007539 554 RYGRLSA----TEEEVYDAARRAAIHD 576 (599)
Q Consensus 554 ~~g~~~~----sdeei~~A~~~a~l~d 576 (599)
.+.++.. ..+++.+.++.|..++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~ 287 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRD 287 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCC
Confidence 8876431 1245666666665543
No 399
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.67 E-value=1.9e-09 Score=104.85 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=59.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh-hhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR-~~i~ 536 (599)
.|+++|.- +|. +..+++++++ +.++|+||+||||||++++|. +++|.+.. ..| ++++
T Consensus 5 ~l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i~ 62 (212)
T cd03274 5 KLVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKLS 62 (212)
T ss_pred EEEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhHH
Confidence 57788765 674 5668999887 899999999999999999997 34554432 333 5799
Q ss_pred eeCCCCCCchh-hHHHHhhcCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~ 557 (599)
+++|+..++.. |.++++.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T cd03274 63 DLIHNSAGHPNLDSCSVEVHFQ 84 (212)
T ss_pred HHhcCCCCCCCCceEEEEEEEE
Confidence 99999887664 7777776553
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.65 E-value=1.5e-08 Score=103.27 Aligned_cols=91 Identities=26% Similarity=0.567 Sum_probs=62.4
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC--------CCCCCceEEECCEeCCCCCHHHHhhhceeeCC--CC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--------FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ--DT 542 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl--------y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q--d~ 542 (599)
.+|+|+||+|+||+.++|||+|||||||++++|+|. |.|++|.|.+--..+. +.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 479999999999999999999999999999999986 6899999876432221 22332 33
Q ss_pred CCchhhHHHHhh--cCCCCCCHHHHHHHHHHcCchHHH
Q 007539 543 VLFNDTIFHNIR--YGRLSATEEEVYDAARRAAIHDTI 578 (599)
Q Consensus 543 ~LF~gTIreNI~--~g~~~~sdeei~~A~~~a~l~d~I 578 (599)
.+=.-||.|-+. .|++ ..-.+.+..|++.|-+
T Consensus 466 ~f~~~tilehl~s~tGD~----~~AveILnraGlsDAv 499 (593)
T COG2401 466 EFGEVTILEHLRSKTGDL----NAAVEILNRAGLSDAV 499 (593)
T ss_pred ccCchhHHHHHhhccCch----hHHHHHHHhhccchhh
Confidence 333446766652 2222 2223566666666654
No 401
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.65 E-value=2.1e-08 Score=106.20 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=65.0
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc---eEEECCEeCCCCCHHHH------hhhceeeCCCC
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG---SIRIDGQDICEVTLESL------RKSIGVVPQDT 542 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G---~I~idG~di~~~~~~~l------R~~i~~V~Qd~ 542 (599)
..+++++ |+|.+||+++|+|+||+|||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3589999 99999999999999999999999999999998864 34445555655554444 44699999998
Q ss_pred CCch-hhHHHHhh
Q 007539 543 VLFN-DTIFHNIR 554 (599)
Q Consensus 543 ~LF~-gTIreNI~ 554 (599)
..+. -++.+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 7774 47777764
No 402
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=3.8e-08 Score=113.70 Aligned_cols=122 Identities=25% Similarity=0.421 Sum_probs=93.9
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC---CCceEEECCEeCCCCCHHHHhhhceeeCCCCCCc-hhh
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDT 548 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p---~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF-~gT 548 (599)
.+|+|+|.-++||+.+-+.||.|||||||++.|+|-.+- ..|+|.+||.+.++.-. ++.++|.+|+...| .-|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 689999999999999999999999999999999998754 35699999999999877 78899999987766 569
Q ss_pred HHHHhhcCC----C-----CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcc-cCCCC
Q 007539 549 IFHNIRYGR----L-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL-KIEGK 599 (599)
Q Consensus 549 IreNI~~g~----~-----~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~-~LSG~ 599 (599)
+||-|.+.. | +.++.|-.++..+.-+ -|-.|....||.||.+.. ..|||
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~l--kilGL~~~~dT~VGnd~~RGvSGG 264 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL--KILGLDHCADTLVGNDMVRGVSGG 264 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHH--HHhCchhhccceecccccccccCc
Confidence 999998752 2 2333332221111111 144677889999998764 58887
No 403
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.62 E-value=3.6e-08 Score=91.85 Aligned_cols=104 Identities=24% Similarity=0.372 Sum_probs=80.9
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCCHHHHhh----hceeeCCCCCC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLESLRK----SIGVVPQDTVL 544 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~----p~~G~I~idG~di~~~~~~~lR~----~i~~V~Qd~~L 544 (599)
.+.+++|++...||.-++||+||||||-++|.++|... .+..+.++|++|+-.++++..|+ .|++++|||.-
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence 68999999999999999999999999999999999865 35667789999999999998887 47899999963
Q ss_pred -c--hhh----HHHHhhcCC--------CCCCHHHHHHHHHHcCchH
Q 007539 545 -F--NDT----IFHNIRYGR--------LSATEEEVYDAARRAAIHD 576 (599)
Q Consensus 545 -F--~gT----IreNI~~g~--------~~~sdeei~~A~~~a~l~d 576 (599)
. +.+ +-+||-.+. -.....+-.+.+.++|+.|
T Consensus 101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKd 147 (330)
T COG4170 101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhcccc
Confidence 2 223 456664331 0123455667788888754
No 404
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=6.3e-08 Score=103.42 Aligned_cols=83 Identities=29% Similarity=0.454 Sum_probs=67.1
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC---EeCCC-----CCHHHHhhhceeeCC--
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG---QDICE-----VTLESLRKSIGVVPQ-- 540 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG---~di~~-----~~~~~lR~~i~~V~Q-- 540 (599)
+..+++++ +++++|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++.+.+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 44689999 99999999999999999999999999999999999999954 44443 455668889999955
Q ss_pred CCCCc-------hhhHHHHhh
Q 007539 541 DTVLF-------NDTIFHNIR 554 (599)
Q Consensus 541 d~~LF-------~gTIreNI~ 554 (599)
+|.+- ..||.|..+
T Consensus 224 ~~~~~r~~~~~~a~~iAEyfr 244 (438)
T PRK07721 224 QPALMRIKGAYTATAIAEYFR 244 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 44432 236888774
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.53 E-value=4.1e-08 Score=94.52 Aligned_cols=86 Identities=19% Similarity=0.289 Sum_probs=58.2
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCc-hhhH
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTI 549 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF-~gTI 549 (599)
+++|++|++++. |+.++|+||||||||||+|.|.+..- +..+|.++... .++.|...+| +-|+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~ 76 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRV 76 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccc
Confidence 346778777654 79999999999999999999987442 22466655331 3666755555 5599
Q ss_pred HHHhhcCCCCCCH---HHHHHHHHHcC
Q 007539 550 FHNIRYGRLSATE---EEVYDAARRAA 573 (599)
Q Consensus 550 reNI~~g~~~~sd---eei~~A~~~a~ 573 (599)
+||+..+.. ... +++.++++.++
T Consensus 77 ~d~l~~~~s-~~~~e~~~~~~iL~~~~ 102 (199)
T cd03283 77 SDDLRDGIS-YFYAELRRLKEIVEKAK 102 (199)
T ss_pred hhccccccC-hHHHHHHHHHHHHHhcc
Confidence 999988752 222 34555555554
No 406
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.53 E-value=1.1e-07 Score=99.40 Aligned_cols=87 Identities=26% Similarity=0.317 Sum_probs=66.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CC-ceEEECCEeCCCCCHHHHhhhceeeCCCC-----CCchhhHHHHhh
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT--HS-GSIRIDGQDICEVTLESLRKSIGVVPQDT-----VLFNDTIFHNIR 554 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p--~~-G~I~idG~di~~~~~~~lR~~i~~V~Qd~-----~LF~gTIreNI~ 554 (599)
++|..++|+||+||||||+++.|++++.+ .+ +.|.....|+ ++..+.++...++|.|.. .-|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 33 4666655555 577777777778888864 368999999988
Q ss_pred cCCCCC-------CHHHHHHHHHH
Q 007539 555 YGRLSA-------TEEEVYDAARR 571 (599)
Q Consensus 555 ~g~~~~-------sdeei~~A~~~ 571 (599)
. +|+. +.|.+..|++.
T Consensus 211 ~-~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 R-KPHAILVGEARDAETISAALEA 233 (358)
T ss_pred c-CCCEEeeeeeCCHHHHHHHHHH
Confidence 6 5653 34445567776
No 407
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.47 E-value=2.3e-07 Score=89.38 Aligned_cols=82 Identities=24% Similarity=0.277 Sum_probs=60.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCCHHHHhhhceeeCC-----CCCCchhhHHHHhhcCCCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGVVPQ-----DTVLFNDTIFHNIRYGRLSA 560 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----d~~LF~gTIreNI~~g~~~~ 560 (599)
.+.|+||+||||||+++.|++.+++. .|.|..-..++. +..+ ...+++.| ++.-|...++.+++.. |++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~vg~~~~~~~~~i~~aLr~~-pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQREVGLDTLSFENALKAALRQD-PDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---CccceeeecccCCCccCHHHHHHHHhcCC-cCE
Confidence 57899999999999999999988754 678776666663 3222 23355655 6678999999999874 665
Q ss_pred -------CHHHHHHHHHHcC
Q 007539 561 -------TEEEVYDAARRAA 573 (599)
Q Consensus 561 -------sdeei~~A~~~a~ 573 (599)
++|.++.+++.+.
T Consensus 78 ii~gEird~e~~~~~l~~a~ 97 (198)
T cd01131 78 ILVGEMRDLETIRLALTAAE 97 (198)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 6777777776664
No 408
>PRK08149 ATP synthase SpaL; Validated
Probab=98.47 E-value=1.2e-07 Score=100.28 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=67.4
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCCCCHHHHh----hhceeeCCCCCC
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESLR----KSIGVVPQDTVL 544 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~di~~~~~~~lR----~~i~~V~Qd~~L 544 (599)
.++++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|-.+|.+++++..+.++ +++++|.....-
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~ 217 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDF 217 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCC
Confidence 4689999 9999999999999999999999999999999988 9999999999888776665 567777553321
Q ss_pred ----------chhhHHHHhh
Q 007539 545 ----------FNDTIFHNIR 554 (599)
Q Consensus 545 ----------F~gTIreNI~ 554 (599)
...||.|..+
T Consensus 218 p~~~r~~a~~~a~tiAE~fr 237 (428)
T PRK08149 218 SSVDRCNAALVATTVAEYFR 237 (428)
T ss_pred CHHHHHhHHHHHHHHHHHHH
Confidence 2346777764
No 409
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4.7e-07 Score=95.10 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=90.0
Q ss_pred ceEEEEEEEEeecCCC-cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 457 GSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~-~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
..+++.+|+|.|+++. +.+.++++++..-+++++||++|+||||++|++.+-..|..|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 4799999999998776 799999999999999999999999999999999999999999998866 5678
Q ss_pred eeeCCCCCCc-hhhHH--HHhhcCCCCCCHHHHHHHHHHcCchHHHhc
Q 007539 536 GVVPQDTVLF-NDTIF--HNIRYGRLSATEEEVYDAARRAAIHDTIMN 580 (599)
Q Consensus 536 ~~V~Qd~~LF-~gTIr--eNI~~g~~~~sdeei~~A~~~a~l~d~I~~ 580 (599)
+|-.|.-.=| +-.+. |=..=..|.-++||+.+.|...|+...+..
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~ 477 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELAL 477 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhh
Confidence 8888865433 22221 111112355689999999998887665543
No 410
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.44 E-value=2.3e-07 Score=88.50 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd 541 (599)
.|+.++|+||||||||||+++|++...| .+.+++..+........++.+++++|+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 3789999999999999999999998876 588888888877777777888999887
No 411
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.44 E-value=2.8e-07 Score=86.93 Aligned_cols=67 Identities=33% Similarity=0.399 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhh-hceeeCCCCC-CchhhHHHHhhcC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQDTV-LFNDTIFHNIRYG 556 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~-~i~~V~Qd~~-LF~gTIreNI~~g 556 (599)
+|+.++|+|+|||||||+++.|++++.| +.+||.++.. ...+|+ ..++.+|+.. +..-++.+|+.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999999877 6899988753 334443 3566677643 3445677777553
No 412
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.43 E-value=3.1e-07 Score=95.02 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=62.6
Q ss_pred EEEEeecCCCcccccceeEeeC-----CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 463 NVHFSYLTERKILDGVSFVVPA-----GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~-----G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
+.-+.|++-...+.++.|++.+ ||.++++||+|-||||++++|+|..+|++|+ ..++ +|+|
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSy 405 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSY 405 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEee
Confidence 3345566544556677777655 6889999999999999999999999999998 2222 5899
Q ss_pred eCCCCC-CchhhHHHHhhcCCC
Q 007539 538 VPQDTV-LFNDTIFHNIRYGRL 558 (599)
Q Consensus 538 V~Qd~~-LF~gTIreNI~~g~~ 558 (599)
=||-.. -|+||+++=+.-..+
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhh
Confidence 999543 499999998765443
No 413
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3e-07 Score=96.48 Aligned_cols=51 Identities=29% Similarity=0.564 Sum_probs=47.3
Q ss_pred CceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
..+|..+|.+.+|. ++..|++-++++..|.++++||++|+|||||++.|..
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 34799999999996 6789999999999999999999999999999999998
No 414
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.39 E-value=2e-07 Score=88.35 Aligned_cols=78 Identities=29% Similarity=0.422 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHH
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreN 552 (599)
|+.++|+||||||||||++.|++.++ |..|+ ++|++..-++.+.+.+.+ .++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999764 34444 466666666666666654 57777877777777
Q ss_pred hhcCCCCCCHHHHHHHHHH
Q 007539 553 IRYGRLSATEEEVYDAARR 571 (599)
Q Consensus 553 I~~g~~~~sdeei~~A~~~ 571 (599)
. || .+.+.+.++++.
T Consensus 76 ~-y~---~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG---TPKSPVEEALAA 90 (180)
T ss_pred e-eC---CcHHHHHHHHHC
Confidence 3 65 345556555544
No 415
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=2.2e-07 Score=92.21 Aligned_cols=111 Identities=19% Similarity=0.290 Sum_probs=68.1
Q ss_pred eEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE--EECCEeCCCCCHHHHhhhc--eeeCCCCCCchhhHHHHhhc
Q 007539 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI--RIDGQDICEVTLESLRKSI--GVVPQDTVLFNDTIFHNIRY 555 (599)
Q Consensus 480 l~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I--~idG~di~~~~~~~lR~~i--~~V~Qd~~LF~gTIreNI~~ 555 (599)
+.|.+||+++|+|++|+|||||++.+.+..+...+++ .+-...-+..+..++.+.+ .+|-.+. +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 4788999999999999999999999999887764433 3322222235666666655 1111110 0011111111
Q ss_pred CCCCCCHHHHHHHHH---HcC-----chHHHhcCcCccccccccCcccCCCC
Q 007539 556 GRLSATEEEVYDAAR---RAA-----IHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 556 g~~~~sdeei~~A~~---~a~-----l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
. . .+.+.++ ..+ +-|.+.++|++|++.+++.|.++|||
T Consensus 88 ~-----~-~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG 133 (249)
T cd01128 88 A-----E-MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGG 133 (249)
T ss_pred H-----H-HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCC
Confidence 0 0 1111111 112 34668999999999999999999997
No 416
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.37 E-value=4.7e-07 Score=87.16 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCC--HHH
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSAT--EEE 564 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~s--dee 564 (599)
+++|+|++|||||||++.+++.+.+..| +.+-..|........+....++++|+..+. +..| |.+..+ ++-
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~ 75 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETG---GCPHTAIREDA 75 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcC---CCccceeccCH
Confidence 6899999999999999999999887655 555556666666667777789999987652 1111 111111 111
Q ss_pred HHHHHHHcCchHHHhcCcCccccccccCcccCCC
Q 007539 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598 (599)
Q Consensus 565 i~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG 598 (599)
.. ....+.+.+.++|++..+.|+-.|..||.
T Consensus 76 ~~---~~~~L~~l~~~~~~~D~iiIEt~G~~l~~ 106 (199)
T TIGR00101 76 SM---NLEAVAEMEARFPPLEMVFIESGGDNLSA 106 (199)
T ss_pred HH---HHHHHHHHHhcCCCCCEEEEECCCCCccc
Confidence 11 12234456667776666777777776663
No 417
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.36 E-value=1.3e-07 Score=85.51 Aligned_cols=73 Identities=32% Similarity=0.493 Sum_probs=56.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-------------CCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhh
Q 007539 488 VAIVGTSGSGKSTILRLLFRSFDT-------------HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (599)
Q Consensus 488 vaIVG~SGSGKSTL~~LL~gly~p-------------~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~ 554 (599)
++|+||||||||||++.|++.+++ ..|+ .||++..-++.+++++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999754 4454 58888888888888874 568888998888888 5
Q ss_pred cCCCCCCHHHHHHHH
Q 007539 555 YGRLSATEEEVYDAA 569 (599)
Q Consensus 555 ~g~~~~sdeei~~A~ 569 (599)
||.+ .+++.++.
T Consensus 76 yg~~---~~~i~~~~ 87 (137)
T cd00071 76 YGTS---KAAVEEAL 87 (137)
T ss_pred ecCc---HHHHHHHH
Confidence 7653 44444443
No 418
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.34 E-value=0.0027 Score=61.24 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 007539 122 EFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTT 157 (599)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~ 157 (599)
++++++.+...+.+...++.++.|++.+..||.+..
T Consensus 7 ~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~ 42 (237)
T PF13748_consen 7 RHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLN 42 (237)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567888889999999999999999999999999864
No 419
>PLN02796 D-glycerate 3-kinase
Probab=98.33 E-value=2.5e-07 Score=94.81 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=53.6
Q ss_pred CcccccceeEe---eCCCE-----EEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHHhh
Q 007539 472 RKILDGVSFVV---PAGKS-----VAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRK 533 (599)
Q Consensus 472 ~~vL~~isl~I---~~G~~-----vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~~~~~~lR~ 533 (599)
..+++++++.+ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 46889999988 67887 9999999999999999999999875 688999999987776666665
No 420
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.33 E-value=5.4e-07 Score=95.84 Aligned_cols=101 Identities=21% Similarity=0.355 Sum_probs=74.8
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEE---CCEeCCCCCHHHHh---hhceee-----CC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRI---DGQDICEVTLESLR---KSIGVV-----PQ 540 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~i---dG~di~~~~~~~lR---~~i~~V-----~Q 540 (599)
.+++++ |+|.+||+++|+|+||+|||||++.|+|+.++ ..|.|.+ .|.++.++..+.++ ...++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 378887 99999999999999999999999999998844 4466666 45777766666665 235666 99
Q ss_pred CCC------CchhhHHHHhhcCCCCC-----CHHHHHHHHHHcCc
Q 007539 541 DTV------LFNDTIFHNIRYGRLSA-----TEEEVYDAARRAAI 574 (599)
Q Consensus 541 d~~------LF~gTIreNI~~g~~~~-----sdeei~~A~~~a~l 574 (599)
+|. ....+|.|.++.-..+. +..+..+|++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 764 34557888886433232 34667788888877
No 421
>PRK15494 era GTPase Era; Provisional
Probab=98.30 E-value=4.5e-07 Score=94.72 Aligned_cols=55 Identities=25% Similarity=0.243 Sum_probs=50.4
Q ss_pred CCceEEEEEEEEeecCCCcccccceeEeeCCC-------EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 455 KGGSIQFDNVHFSYLTERKILDGVSFVVPAGK-------SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 455 ~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~-------~vaIVG~SGSGKSTL~~LL~gly 509 (599)
..|.+++++++|+|+...++++++++++++|+ +++|||++|+|||||++.|.|-.
T Consensus 15 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 15 FKGDTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hCCccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34789999999999977789999999999999 99999999999999999998753
No 422
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.30 E-value=9.9e-07 Score=107.22 Aligned_cols=40 Identities=25% Similarity=0.546 Sum_probs=36.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
.++++|++. ..|+|+|++|++|+.++|+|+||||||||++
T Consensus 600 ~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 588888762 3799999999999999999999999999999
No 423
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.25 E-value=1.3e-06 Score=82.59 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE-----------CCEeCCCCCHHHHhh-----hceeeCCCCCCchh
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI-----------DGQDICEVTLESLRK-----SIGVVPQDTVLFND 547 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i-----------dG~di~~~~~~~lR~-----~i~~V~Qd~~LF~g 547 (599)
|+.++|+|+||||||||++.|++.+.+. |.+.+ +|.+....+.+++.. .++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65544 777777777666643 48899998777655
No 424
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.23 E-value=2.6e-07 Score=92.26 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=69.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe-C------CCCCHHHHhhhceeeCCCC--CCchhhHHHHh---
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-I------CEVTLESLRKSIGVVPQDT--VLFNDTIFHNI--- 553 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d-i------~~~~~~~lR~~i~~V~Qd~--~LF~gTIreNI--- 553 (599)
..++|+||+|||||||+..|.++..+..|++..++.+ + ...+.....-.+.+..|++ .++..+++++-
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 0111123333455555653 24555555442
Q ss_pred hcCCCCCCHHHHHHHHHHcCchHHHhc--CcCccccccccCc---------ccCCCC
Q 007539 554 RYGRLSATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGERG---------LKIEGK 599 (599)
Q Consensus 554 ~~g~~~~sdeei~~A~~~a~l~d~I~~--Lp~G~dT~vgE~G---------~~LSG~ 599 (599)
.+.....+.+++.+.++..+++.+... .|+|.=+.+.+.. ..||||
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G 159 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGG 159 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHH
Confidence 122334678888899999998643222 2444444443322 567775
No 425
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.21 E-value=1.1e-06 Score=85.27 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=27.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
|+|+.++|+|+||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999998875
No 426
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.20 E-value=1.2e-06 Score=84.42 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=45.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
++|+.++|+|+||||||||+++|.+.+.+ ..|.+.+||.+++. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 57899999999999999999999997654 45789999987762 3334578888886
No 427
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.19 E-value=1.1e-06 Score=90.65 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=54.3
Q ss_pred ceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCC--CCCchhhHHHHh
Q 007539 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD--TVLFNDTIFHNI 553 (599)
Q Consensus 478 isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd--~~LF~gTIreNI 553 (599)
+++.+++|+.++|+|++||||||+++.|+++++|..|.+.++ |..++.... ++.+.++.|. ..--..|..+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~~~~~~~~~~~~l 211 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGGQGLAKVTPKDLL 211 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCCCCcCccCHHHHH
Confidence 567889999999999999999999999999999999999986 555655543 4455555442 222234555555
No 428
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.17 E-value=2.4e-06 Score=83.07 Aligned_cols=69 Identities=23% Similarity=0.378 Sum_probs=49.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchh---h--HHHHhhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND---T--IFHNIRYGR 557 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~g---T--IreNI~~g~ 557 (599)
+++..|+|+|+||||||||++.|.+.+. ...+.+++||.+.++. + .+.++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4788999999999999999999999872 1357888888887754 2 333455665
Q ss_pred CCC-CHHHHHHHHHHc
Q 007539 558 LSA-TEEEVYDAARRA 572 (599)
Q Consensus 558 ~~~-sdeei~~A~~~a 572 (599)
|++ +.+.+.+.++..
T Consensus 63 ~~~~~~~~l~~~l~~l 78 (209)
T PRK05480 63 PDAFDHDLLIEHLKAL 78 (209)
T ss_pred cccccHHHHHHHHHHH
Confidence 544 345566555544
No 429
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.14 E-value=2e-06 Score=91.28 Aligned_cols=73 Identities=33% Similarity=0.447 Sum_probs=58.0
Q ss_pred ecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--------HHHHhhhceeeC
Q 007539 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--------LESLRKSIGVVP 539 (599)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~--------~~~lR~~i~~V~ 539 (599)
|..+..+++++ +++.+|++++|+|++|+|||||+++|++..+|+.|.|...|...++.. .+.+++.+.++.
T Consensus 121 ~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~ 199 (413)
T TIGR03497 121 LETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVA 199 (413)
T ss_pred ccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEE
Confidence 33455789999 999999999999999999999999999999999999998887665432 222344556665
Q ss_pred CC
Q 007539 540 QD 541 (599)
Q Consensus 540 Qd 541 (599)
|-
T Consensus 200 ts 201 (413)
T TIGR03497 200 TS 201 (413)
T ss_pred CC
Confidence 53
No 430
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.11 E-value=4.8e-06 Score=88.18 Aligned_cols=59 Identities=22% Similarity=0.426 Sum_probs=53.1
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I 516 (599)
..|.++|+++.|+ +.++++|..|++.+|++++|+|++||||||+++.+.|=-.|..-++
T Consensus 74 ~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 74 RDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred ccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 4799999999996 5679999999999999999999999999999999999888865554
No 431
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.10 E-value=3e-06 Score=86.96 Aligned_cols=56 Identities=29% Similarity=0.416 Sum_probs=48.6
Q ss_pred ecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 468 Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
|..+..+++++ +++.+|++++|+|++|+|||||+++|+|+.+|+.|.+..-|.+-+
T Consensus 53 l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ 108 (326)
T cd01136 53 LPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGR 108 (326)
T ss_pred cCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCc
Confidence 44455789999 999999999999999999999999999999999988877664433
No 432
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.09 E-value=2.2e-06 Score=91.02 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=58.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (599)
.++.++++-.+..+..+++++ ++|.+||+++|+|++|+|||||++.|+|..+|+.|.+.+.|..-++
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrE 195 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE 195 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchH
Confidence 577788877776667899999 9999999999999999999999999999999999988877765444
No 433
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=7.1e-06 Score=87.19 Aligned_cols=68 Identities=24% Similarity=0.373 Sum_probs=57.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
.++-++++-.|..+-.+++++ +++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|+.-++.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev 197 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREV 197 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccH
Confidence 456666766666555688885 99999999999999999999999999999999999998888765544
No 434
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.04 E-value=4.4e-06 Score=90.71 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=57.1
Q ss_pred EEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
++|++..|+ ...+++++++.+..|+.+.++|++|||||||++.|.|+.+|.+|++.+++..|.++
T Consensus 187 ~~d~~~v~G-q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 187 QHDLSDVIG-QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred ccCeEEEEC-cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 457777774 44689999999999999999999999999999999999999999999998776543
No 435
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.04 E-value=4.7e-06 Score=89.06 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=58.1
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH---HHHh---hhceeeCCCCC
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLR---KSIGVVPQDTV 543 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~---~~lR---~~i~~V~Qd~~ 543 (599)
.+..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.+...|.+-+++.. +.+. ..-+++.|++.
T Consensus 131 tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s 209 (422)
T TIGR02546 131 TGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTS 209 (422)
T ss_pred CCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccc
Confidence 345689999 9999999999999999999999999999999999999886655554431 1111 12456666665
Q ss_pred Cchh
Q 007539 544 LFND 547 (599)
Q Consensus 544 LF~g 547 (599)
.++.
T Consensus 210 ~~p~ 213 (422)
T TIGR02546 210 DRPS 213 (422)
T ss_pred cCCH
Confidence 5543
No 436
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.99 E-value=4.5e-06 Score=95.82 Aligned_cols=64 Identities=28% Similarity=0.373 Sum_probs=58.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC----------------------------------------------------CCCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF----------------------------------------------------DTHS 513 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly----------------------------------------------------~p~~ 513 (599)
..+||.||+||||||++++|++.+ +|.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 479999999999999999999886 2778
Q ss_pred ceEEECCEeCC-CCCHHHHhhhceeeCCCCCCchhhHHHHhh
Q 007539 514 GSIRIDGQDIC-EVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (599)
Q Consensus 514 G~I~idG~di~-~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~ 554 (599)
|.|++||.|+. .+..+++++.++.|.|.|. ||+|+.
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~-----vr~~l~ 118 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPP-----VRNVLI 118 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHH-----HHHHHH
Confidence 89999999998 8999999999999999998 888874
No 437
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.99 E-value=7.8e-06 Score=80.66 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=41.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce----EEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS----IRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~----I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
++...+||.|+||||||||++.|.++..+..|. |.+|+... ....+...+++++..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~----~~~~~~~~g~~~~~~ 90 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL----DNAVLDAHGLRPRKG 90 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC----CHHHHHhcccccccC
Confidence 346799999999999999999999999999998 44554221 223444567766643
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.98 E-value=3.4e-06 Score=90.81 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=48.1
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhc
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRY 555 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~ 555 (599)
+.+..+++|+++++|||+|+||||++..|++.+.+..|.. +|++|++|+ |.-+..||+.+
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHH
Confidence 3444566799999999999999999999999887777642 578888887 55667888865
No 439
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=6.4e-06 Score=84.91 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=56.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC------CHHHHhhhceeeCCCCCCch-hhHHHHhhc
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------TLESLRKSIGVVPQDTVLFN-DTIFHNIRY 555 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~------~~~~lR~~i~~V~Qd~~LF~-gTIreNI~~ 555 (599)
++|+.+++|||+||||||++.-|++.+.+..|+|.+.+.|.... ....-|..+.+++|+..... .++.+++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999989999988887432 22233556899998655443 356677643
No 440
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.96 E-value=8.5e-06 Score=88.54 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=50.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchh-hHHHHhh
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIR 554 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~g-TIreNI~ 554 (599)
-.|||.|+||||||||++.|.++. |..|.|.+||..- ..+.+.+.+|+|.+|+. ++.+||.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~-------~~~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND-------SSRIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec-------chhhhCccCCChhhcchhHHHHHHH
Confidence 589999999999999999999997 6789999999742 12346788999988864 7888873
No 441
>PRK07261 topology modulation protein; Provisional
Probab=97.96 E-value=7.5e-06 Score=76.92 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=44.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe----CCCCCHHHHhhh-ceeeCCCCCCchhhHHH
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD----ICEVTLESLRKS-IGVVPQDTVLFNDTIFH 551 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d----i~~~~~~~lR~~-i~~V~Qd~~LF~gTIre 551 (599)
++++|+|+||||||||++.|.+.+... .|..|... ..+.+.+++.+. -.++.|+.++++|+-..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~--~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~wIidg~~~~ 69 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCP--VLHLDTLHFQPNWQERDDDDMIADISNFLLKHDWIIDGNYSW 69 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCC--eEecCCEEeccccccCCHHHHHHHHHHHHhCCCEEEcCcchh
Confidence 479999999999999999998876432 23333332 234455555444 45788999999998654
No 442
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.94 E-value=1.1e-05 Score=61.29 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=28.3
Q ss_pred cceeEeeC-CCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 007539 477 GVSFVVPA-GKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (599)
Q Consensus 477 ~isl~I~~-G~~vaIVG~SGSGKSTL~~LL~gly~p~ 512 (599)
+-++++.+ |+.+.|.|+||||||||+..+.=+.-|.
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 44666765 6799999999999999999886555443
No 443
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.92 E-value=4.7e-06 Score=88.48 Aligned_cols=51 Identities=24% Similarity=0.463 Sum_probs=45.9
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICE 525 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~di~~ 525 (599)
+++.+ |++.+|++++|+|++|+|||||++.|+|+.+|+. |.|-.+|.++.+
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e 218 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKD 218 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHH
Confidence 45444 9999999999999999999999999999999986 999999998865
No 444
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.92 E-value=1.1e-05 Score=81.46 Aligned_cols=55 Identities=29% Similarity=0.399 Sum_probs=42.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~ 543 (599)
.++|+|+|||||||+++.|.++..+..|.+...+ ++..++.+. |+..++.+|+|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HHHhhccccccc
Confidence 4799999999999999999999988877554432 565555544 566788888764
No 445
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.91 E-value=1.2e-05 Score=77.68 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=36.0
Q ss_pred cccceeEeeCCC-EEEEEcCCCCcHHHHHHHHh--------cCCCCCCceE
Q 007539 475 LDGVSFVVPAGK-SVAIVGTSGSGKSTILRLLF--------RSFDTHSGSI 516 (599)
Q Consensus 475 L~~isl~I~~G~-~vaIVG~SGSGKSTL~~LL~--------gly~p~~G~I 516 (599)
..++||++++|+ .++|+||+|||||||++.|. |++-|....+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~ 67 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS 67 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc
Confidence 457899999996 69999999999999999999 8887765443
No 446
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.89 E-value=8.3e-06 Score=87.37 Aligned_cols=56 Identities=32% Similarity=0.492 Sum_probs=48.6
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
.+..+++++ ++|.+||+++|+|+||+|||||++.|+|..+|+.|.+...|..-+++
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev 204 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREV 204 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHH
Confidence 345689999 99999999999999999999999999999999998887766654443
No 447
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.88 E-value=1.1e-05 Score=85.74 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=53.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (599)
.+-+.++-.|..+..+++.+ +++.+||+++|+|++|+|||||++.|++..+|+.+.+...|..-++
T Consensus 112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~~e 177 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGRE 177 (411)
T ss_pred HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecChHH
Confidence 33444555555456789988 9999999999999999999999999999999998887777665444
No 448
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.87 E-value=1e-05 Score=85.99 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=50.5
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~ 527 (599)
+..+++++ +++.+|++++|+|+||+|||||++.|++..+++.+.|...|..-++..
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~ 199 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIP 199 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHH
Confidence 34589999 999999999999999999999999999999999999998888776654
No 449
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=2.4e-05 Score=90.99 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=36.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
.|+++|++. ..|+|+||+|++|+.++|+|+||||||||++
T Consensus 612 ~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 588999862 3699999999999999999999999999998
No 450
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.86 E-value=1.3e-05 Score=85.47 Aligned_cols=55 Identities=27% Similarity=0.464 Sum_probs=48.9
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
+..+++++ +++.+|++++|+|++|+|||||++.++|..+++.|.|...|..-+++
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev 204 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREV 204 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHH
Confidence 34589999 99999999999999999999999999999999999999888554443
No 451
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.85 E-value=1e-05 Score=85.93 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=49.0
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~ 527 (599)
+..+++ .+|++.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|..-+++.
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~ 182 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVR 182 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHH
Confidence 334665 69999999999999999999999999999999999999998888666544
No 452
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.83 E-value=1.4e-05 Score=78.47 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceE--------EECCEeCCCC-CHHHHhhhceeeC------CCCCCch
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSI--------RIDGQDICEV-TLESLRKSIGVVP------QDTVLFN 546 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly---~p~~G~I--------~idG~di~~~-~~~~lR~~i~~V~------Qd~~LF~ 546 (599)
...++|+|++||||||+.++|+..+ .++.|.+ .-+|.|+.+. ...++.+++.+++ |+.++++
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 3579999999999999999998444 7888986 4568888776 4566666777777 7778888
Q ss_pred hhHHHHhh
Q 007539 547 DTIFHNIR 554 (599)
Q Consensus 547 gTIreNI~ 554 (599)
..+.+||+
T Consensus 84 ~~i~~~lr 91 (225)
T PRK00023 84 EDVTDEIR 91 (225)
T ss_pred cchHHhhC
Confidence 88888875
No 453
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.80 E-value=1.1e-05 Score=86.06 Aligned_cols=53 Identities=25% Similarity=0.483 Sum_probs=43.2
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCC
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICE 525 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~di~~ 525 (599)
..+++++ |+|.+||+++|+|++|+|||||+++|+|+.+|+- |.|-.+|.++++
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~ 211 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKE 211 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHH
Confidence 4589999 9999999999999999999999999999988762 444444444433
No 454
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.80 E-value=2.4e-05 Score=79.28 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEECCEeCCCCCHHHH
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFD--THSGSIRIDGQDICEVTLESL 531 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~--p~~G~I~idG~di~~~~~~~l 531 (599)
.+||.|+|||||||+++.|.++.. |.+|.|.+-+.|--..+.+.+
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l 110 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVL 110 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHH
Confidence 799999999999999999999988 778887765555444444433
No 455
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.79 E-value=3e-05 Score=90.41 Aligned_cols=43 Identities=30% Similarity=0.516 Sum_probs=37.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
.|+++|++ ...|+|+|++|++|+.++|+|.||||||||++-++
T Consensus 614 ~L~v~~l~------~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGAR------ENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCc------cCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 58888885 23699999999999999999999999999998654
No 456
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.78 E-value=1.4e-05 Score=78.04 Aligned_cols=72 Identities=24% Similarity=0.192 Sum_probs=48.9
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHH
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIr 550 (599)
+.+.+|+++++++ +.++|+||+||||||+++.+.+..-. ..|. ..+ ..+..++++.|- ..+-++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~---------~vp--~~~~~i~~~~~i--~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS---------FVP--ASKAEIGVVDRI--FTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC---------eec--cccceecceeeE--eccCCch
Confidence 4578899999887 99999999999999999999764311 1111 111 112457777652 2234678
Q ss_pred HHhhcCC
Q 007539 551 HNIRYGR 557 (599)
Q Consensus 551 eNI~~g~ 557 (599)
||+..|.
T Consensus 84 ~~ls~g~ 90 (216)
T cd03284 84 DDLAGGR 90 (216)
T ss_pred hhhccCc
Confidence 8887764
No 457
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.76 E-value=2.1e-05 Score=80.23 Aligned_cols=79 Identities=25% Similarity=0.339 Sum_probs=53.0
Q ss_pred cccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCCHHHHhh-hceeeCCCCCC-----c
Q 007539 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRK-SIGVVPQDTVL-----F 545 (599)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i---dG~di~~~~~~~lR~-~i~~V~Qd~~L-----F 545 (599)
++.+...++ +++++++|+||+|||||++.|+|...+..|+|.. .|.....- .+.++- ..+++.+.|-+ .
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~-~~~~~~~~~~~liDtPG~~~~~~~ 229 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH-RELFPLPGGGLLIDTPGFREFGLL 229 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccce-EEEEEcCCCCEEEECCCCCccCCc
Confidence 444444555 5999999999999999999999999999999975 23222211 112222 26788888876 2
Q ss_pred hhhHHHHhhc
Q 007539 546 NDTIFHNIRY 555 (599)
Q Consensus 546 ~gTIreNI~~ 555 (599)
..+..|...+
T Consensus 230 ~~~~~~~~~~ 239 (287)
T cd01854 230 HIDPEELAHY 239 (287)
T ss_pred cCCHHHHHHH
Confidence 3455555443
No 458
>PRK05922 type III secretion system ATPase; Validated
Probab=97.75 E-value=5.3e-05 Score=80.54 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=46.7
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
-.+++.+ +++.+|++++|+|++|+|||||++.|+|..+++.|.+...|..-++.
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev 198 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREV 198 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchH
Confidence 3477776 99999999999999999999999999999999999987766654443
No 459
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.75 E-value=2.2e-05 Score=75.90 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
++.+.+|+++++++|+.++|.||||+||||+++.+.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999999999999999997
No 460
>PTZ00035 Rad51 protein; Provisional
Probab=97.72 E-value=4.5e-05 Score=79.38 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=58.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-C-----CCceE-EECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHh
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFD-T-----HSGSI-RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-p-----~~G~I-~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI 553 (599)
=|++|+.+.|+|++|||||||...++.... | ..|.+ +||+.+. ++.+.+ ..+.|..-+...++.+||
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~eri----~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPERI----VQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHHH----HHHHHHhCCChHhHhhce
Confidence 489999999999999999999998876555 4 46666 8888643 444443 333566666777899999
Q ss_pred hcCCCCCCHHHHHHHH
Q 007539 554 RYGRLSATEEEVYDAA 569 (599)
Q Consensus 554 ~~g~~~~sdeei~~A~ 569 (599)
.+.++ .+-++..+.+
T Consensus 188 ~~~~~-~~~e~~~~~l 202 (337)
T PTZ00035 188 AYARA-YNHEHQMQLL 202 (337)
T ss_pred EEEcc-CCHHHHHHHH
Confidence 98875 3444444443
No 461
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.70 E-value=2.9e-05 Score=74.71 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
+++|+|++|+|||||++.|+|...|.+|.+..+.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~ 36 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV 36 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCc
Confidence 5899999999999999999999888889887764
No 462
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.69 E-value=3.5e-05 Score=94.18 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=45.5
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
++.+++++.+. ..+.|+||||+|++|+.++|+|+||||||||+..+ +|. +|++.++.
T Consensus 936 l~~~~i~i~~~-~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~e 992 (1809)
T PRK00635 936 PVPADITIKNA-YQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYAE 992 (1809)
T ss_pred cccceEEEecc-ccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeeec
Confidence 44566777664 23579999999999999999999999999988776 453 89997643
No 463
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.67 E-value=3.3e-05 Score=75.45 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=42.1
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEE
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRI 518 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g-ly~p~~G~I~i 518 (599)
+.+.+|+++++++|++++|.||+|+||||+++.+.+ .+.++.|....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 568899999999999999999999999999999999 77778886543
No 464
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.66 E-value=3.7e-05 Score=80.41 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=39.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCCHHHHhhh
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~~~~~~lR~~ 534 (599)
.|||.|++|||||||++.|.++.++. .|.|.+||..+..-....+++.
T Consensus 214 IIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~ 264 (460)
T PLN03046 214 VIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhh
Confidence 58999999999999999999998776 7889999988755555555544
No 465
>PRK00098 GTPase RsgA; Reviewed
Probab=97.66 E-value=7e-05 Score=76.89 Aligned_cols=35 Identities=40% Similarity=0.607 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i 518 (599)
+|++++++|+||+|||||++.|+|...+..|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 59999999999999999999999999999999986
No 466
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.63 E-value=5.2e-05 Score=73.30 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=26.1
Q ss_pred ceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 478 isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
.++++.+|++++|+||+||||||+++.|.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence 35666689999999999999999999999
No 467
>PRK14530 adenylate kinase; Provisional
Probab=97.63 E-value=4.7e-05 Score=74.32 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHH
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdee 564 (599)
|.++.|+|++||||||+.+.|++.|.. ..++- -+-+|+.+..-.++..--.+++++++..|.. .+|+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~----~~i~~-------g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~-~~d~~ 70 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGV----EHVTT-------GDALRANKQMDISDMDTEYDTPGEYMDAGEL-VPDAV 70 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC----eEEec-------cHHHHHhccCCcccccchHHHHHHHHHcCCC-CCHHH
Confidence 568999999999999999999988853 12211 1133333322222222224678899988763 44554
Q ss_pred HHHHHH
Q 007539 565 VYDAAR 570 (599)
Q Consensus 565 i~~A~~ 570 (599)
+.+.++
T Consensus 71 ~~~~l~ 76 (215)
T PRK14530 71 VNEIVE 76 (215)
T ss_pred HHHHHH
Confidence 444443
No 468
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=97.63 E-value=0.096 Score=52.95 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 383 VLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQL 436 (599)
Q Consensus 383 ~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 436 (599)
++.+-.+..|.+|+|.+......+.++..+++.+.+.+..+.+-+...+|+.++
T Consensus 257 i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~tivEL~Si~kRL~~F 310 (315)
T PF05992_consen 257 IILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWTTIVELRSIYKRLRAF 310 (315)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455678999999999999999999999999999999999999999999876
No 469
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.62 E-value=4.9e-05 Score=72.44 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=41.2
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc--------CCCCCCceEEECCEeCC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--------SFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g--------ly~p~~G~I~idG~di~ 524 (599)
+|+++++..++++. +|+|++|||||||++.+.+ -..|..+++.+++.++.
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~ 66 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFK 66 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEE
Confidence 68889999776555 9999999999999999987 45567788888887653
No 470
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.60 E-value=7.4e-05 Score=73.22 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=32.9
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
.+.+.+|+++++++|+.+.|+||+||||||+++.+.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 456889999999999999999999999999999864
No 471
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.60 E-value=0.0001 Score=76.21 Aligned_cols=75 Identities=21% Similarity=0.451 Sum_probs=60.6
Q ss_pred EeecCCCcccccceeEeeCCC-----EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCC
Q 007539 466 FSYLTERKILDGVSFVVPAGK-----SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (599)
Q Consensus 466 F~Y~~~~~vL~~isl~I~~G~-----~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 540 (599)
|+||+.+..+.++.|+|+.|+ .+...|++|-||||++++++|..+|++|. ++..+ +++|=||
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykpq 409 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKPQ 409 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecccc
Confidence 678877778899999999986 57889999999999999999999998763 22222 4788888
Q ss_pred CCC-CchhhHHHHh
Q 007539 541 DTV-LFNDTIFHNI 553 (599)
Q Consensus 541 d~~-LF~gTIreNI 553 (599)
... =|.+|+|+=+
T Consensus 410 kispK~~~tvR~ll 423 (592)
T KOG0063|consen 410 KISPKREGTVRQLL 423 (592)
T ss_pred ccCccccchHHHHH
Confidence 754 5888888754
No 472
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.59 E-value=3.8e-05 Score=77.11 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=43.0
Q ss_pred eEEEEEEEEeecCC-CcccccceeEee-------CCCEEEEEcCCCCcHHHHHHHHhcCCCC---CCceEEECCE
Q 007539 458 SIQFDNVHFSYLTE-RKILDGVSFVVP-------AGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQ 521 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~-~~vL~~isl~I~-------~G~~vaIVG~SGSGKSTL~~LL~gly~p---~~G~I~idG~ 521 (599)
.++|+++++.|... +.+++++++.++ +|++++++|++|+||||+++.|++.+.. .-|-|..|+.
T Consensus 40 ~i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 40 KVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred eEEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 35555555555321 234556666655 5699999999999999999999887643 3444555544
No 473
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.58 E-value=8.6e-05 Score=69.41 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC----CCCCCc----eEEECCEeCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRS----FDTHSG----SIRIDGQDIC 524 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gl----y~p~~G----~I~idG~di~ 524 (599)
.-+++|+|++|||||||++.+.+. +.|+.| .+.++|.++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~ 61 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLN 61 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEE
Confidence 456999999999999999999997 779999 8888887763
No 474
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.56 E-value=6.8e-05 Score=79.54 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=38.6
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~ 521 (599)
.+++.+ +++.+||+++|+|+||+|||||++.|+|..+++ .+.+-++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d--v~Vi~lI 196 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD--VIVVGLV 196 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC--EEEEEEE
Confidence 467777 999999999999999999999999999988774 4444333
No 475
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.56 E-value=4.4e-05 Score=74.75 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
.+||.|+|||||||+++.|.+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999999875
No 476
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.55 E-value=4.3e-05 Score=71.19 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=41.9
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhh-hceeeCCCCCC-chhhHHHHhhc
Q 007539 491 VGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQDTVL-FNDTIFHNIRY 555 (599)
Q Consensus 491 VG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~-~i~~V~Qd~~L-F~gTIreNI~~ 555 (599)
+|+|||||||+++.|.+.+ |.+.+||-.+. +...+|+ ..++++||... ...+..+|..+
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLH--PRRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCC--chhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 5999999999999999877 77999994332 2233443 46888888543 34566677765
No 477
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.55 E-value=4.3e-05 Score=73.54 Aligned_cols=69 Identities=22% Similarity=0.188 Sum_probs=40.7
Q ss_pred ccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-HHHHhhhceeeCCCCCCch
Q 007539 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGVVPQDTVLFN 546 (599)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~-~~~lR~~i~~V~Qd~~LF~ 546 (599)
+++++++.+| ..+|+|++|||||||+..|.-....... ....|..++++- ...-...|.+++|+.-++.
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~ 82 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA 82 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC
Confidence 5677777777 7799999999999999998743322211 001122111100 0111345788888876665
No 478
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.55 E-value=3.5e-05 Score=72.73 Aligned_cols=43 Identities=35% Similarity=0.603 Sum_probs=36.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEECCEeCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDIC 524 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly~-p~~G~I~idG~di~ 524 (599)
.++|..+.++|++||||||+++.|.+.+. +..|.+++||.+++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 57899999999999999999999987664 56788899875553
No 479
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.55 E-value=9.4e-05 Score=72.71 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=58.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCC-CCC------CceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHh
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF-DTH------SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly-~p~------~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI 553 (599)
=+++|+.+.|+|++|||||||+.-++... .+. .+.+++|+.+ ..+.+.+++...-..|+ ..++.+|+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~--~~~~~rl~~~~~~~~~~----~~~~~~~i 88 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG--AFRPERLVQLAVRFGLD----PEEVLDNI 88 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC--CCCHHHHHHHHHHhccc----hhhhhccE
Confidence 38899999999999999999998887654 344 6778999854 35566666555444454 34677888
Q ss_pred hcCCCCCCHHHHHHHHH
Q 007539 554 RYGRLSATEEEVYDAAR 570 (599)
Q Consensus 554 ~~g~~~~sdeei~~A~~ 570 (599)
.+.++ .+.+++.+.++
T Consensus 89 ~~~~~-~~~~~~~~~l~ 104 (226)
T cd01393 89 YVARP-YNGEQQLEIVE 104 (226)
T ss_pred EEEeC-CCHHHHHHHHH
Confidence 77665 34455444444
No 480
>PRK06820 type III secretion system ATPase; Validated
Probab=97.55 E-value=9.6e-05 Score=78.87 Aligned_cols=51 Identities=25% Similarity=0.454 Sum_probs=43.3
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~ 521 (599)
.+-.+++++ +++.+||+++|+|++|+|||||+++|++..+|+.+.+-.-|.
T Consensus 149 TGi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 149 TGIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred CCCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 345689999 999999999999999999999999999999888754433343
No 481
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.54 E-value=5.4e-05 Score=71.32 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=33.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-ECCEe
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-IDGQD 522 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~-idG~d 522 (599)
++|+.++|+|.+||||||+++.|.+.+.+..+.+. +|+-+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 57999999999999999999999999877666664 77743
No 482
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.52 E-value=8.8e-05 Score=69.21 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCE
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQ 521 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~ 521 (599)
..++|||+||||||||++-|.+...+.. |.|..++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 3799999999999999999998887644 89998766
No 483
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.51 E-value=9.2e-05 Score=68.07 Aligned_cols=34 Identities=32% Similarity=0.622 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~ 517 (599)
+|++++++|+||+|||||+|.|.+-.....|+|.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 4599999999999999999999997766666654
No 484
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.51 E-value=6.7e-05 Score=81.96 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=52.3
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~ 527 (599)
...+.+++++.+..|+.+.++|++|+||||+++.+.++++|.+|++.+++..+.++.
T Consensus 197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 346889999999999999999999999999999999999999999999998886653
No 485
>PRK07429 phosphoribulokinase; Provisional
Probab=97.49 E-value=0.00012 Score=75.67 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=40.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCEeCCCCCHHHHhhhceeeCCCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQDICEVTLESLRKSIGVVPQDTV 543 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G~I-~idG~di~~~~~~~lR~~i~~V~Qd~~ 543 (599)
.++|.|+|||||||+++.|.+++.+..+.+ ..|+ ...++. ..|+.+++.+++|.
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd--~~~~~~-~~r~~~g~~~l~p~ 64 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD--YHSYDR-KQRKELGITALDPR 64 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCceEEEEecc--cccCCH-HHHHhcCCcccCcc
Confidence 799999999999999999999998887654 4554 334433 44667777777653
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.49 E-value=8.2e-05 Score=71.61 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (599)
.++|+|+||||||||++.|.+++ ..|.+.+-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~ 31 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVII 31 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEE
Confidence 47999999999999999999988 33444433
No 487
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.49 E-value=0.00016 Score=71.60 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=50.9
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhc-CCCC------CCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhh
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFR-SFDT------HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~g-ly~p------~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~ 554 (599)
|++|+.+.|+|++|||||||+.-++. ...| .++.+++|+.+ ..+.+.+++.. |.......++.+||.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i~ 89 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNIY 89 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCEE
Confidence 88999999999999999999987763 2334 37889999865 33444444322 111112345777877
Q ss_pred cCCCCCCHHHHHH
Q 007539 555 YGRLSATEEEVYD 567 (599)
Q Consensus 555 ~g~~~~sdeei~~ 567 (599)
+.++ .+.+++.+
T Consensus 90 ~~~~-~~~~~l~~ 101 (235)
T cd01123 90 VARA-YNSDHQLQ 101 (235)
T ss_pred EEec-CCHHHHHH
Confidence 7654 33344433
No 488
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.47 E-value=4.6e-05 Score=72.44 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=36.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEECCEeCC
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDGQDIC 524 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~-G~I~idG~di~ 524 (599)
..++|+.+.++|++||||||+++.|.+.+.... +.+.+||.+++
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 457899999999999999999999999885333 35889987765
No 489
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.45 E-value=0.36 Score=55.29 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC-hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 190 TTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRE-TGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (599)
Q Consensus 190 ~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~-~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (599)
....+++.+..++..++..++..++..++.+++++. ..+|+-.. .+.....+++.+++++.+...... .+..++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~-~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~-~~~~l~~~~ 223 (659)
T TIGR00954 146 PPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSG-FTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVE-LYSNLTKPI 223 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEeccCCCCCCCccccHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344455555555545554444444444444444443 33333222 223556677778888877555433 333333322
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 269 MVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTK 306 (599)
Q Consensus 269 ~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (599)
+.++...+.+...+.|.+.+++++++++...+.++..+
T Consensus 224 ~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~ 261 (659)
T TIGR00954 224 LDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRP 261 (659)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHcc
Confidence 22222222222235666656555555555555554433
No 490
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.44 E-value=0.00013 Score=77.71 Aligned_cols=41 Identities=32% Similarity=0.600 Sum_probs=38.0
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~ 513 (599)
..+++++ +++.+|++++|.|+||+|||||++.|++..+++-
T Consensus 150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 3589999 9999999999999999999999999999998864
No 491
>PLN02165 adenylate isopentenyltransferase
Probab=97.43 E-value=0.00011 Score=75.20 Aligned_cols=45 Identities=33% Similarity=0.399 Sum_probs=38.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceE-EECCEeCCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSI-RIDGQDICEVT 527 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~---p~~G~I-~idG~di~~~~ 527 (599)
++|+.++|+||||||||||+..|++.+. .+.+++ .++|.||....
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTak 89 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQ 89 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCC
Confidence 4688999999999999999999999976 567777 56888886553
No 492
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.43 E-value=0.00015 Score=70.72 Aligned_cols=54 Identities=26% Similarity=0.299 Sum_probs=37.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCEeCCCC-CHHHHhhhceeeCC
Q 007539 487 SVAIVGTSGSGKSTILRLLF---RSFDTHSGSIR--------IDGQDICEV-TLESLRKSIGVVPQ 540 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~---gly~p~~G~I~--------idG~di~~~-~~~~lR~~i~~V~Q 540 (599)
.++|.||+||||||+++.|+ |+.-++.|.++ .+|.++.+- ....+++++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFI 69 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEe
Confidence 68999999999999999998 55558899875 455555321 12334555555443
No 493
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.40 E-value=8.8e-05 Score=76.56 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=57.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCc----e-EEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHh
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSG----S-IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~g--ly~p~~G----~-I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI 553 (599)
=+++|+.+.|.|++|+|||||+.-++. ..+++.| . ++||+.+. ++.+. +..+.|..-+...++.+||
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~--f~~~R----l~~ia~~~~~~~~~~l~~i 165 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT--FRPER----LLAIAERYGLNPEDVLDNV 165 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC--CCHHH----HHHHHHHcCCChHHhhccE
Confidence 589999999999999999999998876 4445454 4 89998754 44432 3333455556667899999
Q ss_pred hcCCCCCCHHHHHHHHH
Q 007539 554 RYGRLSATEEEVYDAAR 570 (599)
Q Consensus 554 ~~g~~~~sdeei~~A~~ 570 (599)
.+.+. .+-++..+.++
T Consensus 166 ~~~~~-~~~~~~~~~l~ 181 (316)
T TIGR02239 166 AYARA-YNTDHQLQLLQ 181 (316)
T ss_pred EEEec-CChHHHHHHHH
Confidence 88764 33344444443
No 494
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.40 E-value=0.00025 Score=69.96 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=42.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHH-HHHHhcCCCCCCceEEECC
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTI-LRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL-~~LL~gly~p~~G~I~idG 520 (599)
+|..++++..+++ -+++|+.+.|+|++||||||+ .+++.++.++.+..+++..
T Consensus 7 ~~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 7 ELSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred EEEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4556666655543 289999999999999999999 6999998887777788874
No 495
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=9.5e-05 Score=83.54 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=40.4
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDIC 524 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~di~ 524 (599)
++++.++.+++|+++++|||+|+||||.+..|++.|.+.+| .|.+-..|..
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~ 226 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSF 226 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCccc
Confidence 45566677788999999999999999999999998877776 5655554443
No 496
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0001 Score=77.16 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=35.3
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G 514 (599)
+++++.++.+++|+.+++|||+|+||||++..|+..+....|
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G 166 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG 166 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 467778888999999999999999999999999886643333
No 497
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.00031 Score=86.33 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=0.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHH----hcCCCCC-CceEEECCEeCCCCCHHHHh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL----FRSFDTH-SGSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL----~gly~p~-~G~I~idG~di~~~~~~~lR 532 (599)
.++++|+- +|.+++.--.-|.|. ...++||||+|||||||+..| .|..+|. .|.+++.|.++..- ...+
T Consensus 5 kl~i~g~r-Sf~~~~~~~~~I~F~---~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~~ 78 (1311)
T TIGR00606 5 KMSILGVR-SFGIEDKDKQIIDFF---SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDVR 78 (1311)
T ss_pred eeeeecee-cCCCccccceeeecc---cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--Hhhh
Q ss_pred hhceeeCCCC
Q 007539 533 KSIGVVPQDT 542 (599)
Q Consensus 533 ~~i~~V~Qd~ 542 (599)
..|.+++++.
T Consensus 79 a~V~l~F~~~ 88 (1311)
T TIGR00606 79 AQIRLQFRDV 88 (1311)
T ss_pred heeEEEEEcC
No 498
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.35 E-value=0.00018 Score=78.34 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=38.8
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEE
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIR 517 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~---gly~p~~G~I~ 517 (599)
++...++|+-+.+ +|..++|.|+|||||||+++.|+ |+.-.+.|.++
T Consensus 270 g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y 319 (512)
T PRK13477 270 GSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY 319 (512)
T ss_pred CCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence 4557899999977 88999999999999999999999 55455556554
No 499
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.35 E-value=0.00019 Score=74.64 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=37.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~ 521 (599)
-++++..+.|+|++||||||+++.|+++.+|.++-|.+.+.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~ 198 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDT 198 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCC
Confidence 46789999999999999999999999999999998887654
No 500
>PRK09183 transposase/IS protein; Provisional
Probab=97.29 E-value=0.00011 Score=73.74 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=42.8
Q ss_pred EEEEEEEeecCCC-----cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 007539 460 QFDNVHFSYLTER-----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (599)
Q Consensus 460 ~f~nVsF~Y~~~~-----~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i 518 (599)
.+++..|++.+.. ..|.+++| +++|+.+.|+||+|+|||+|+..|.........++.+
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4455566664321 24777888 9999999999999999999999997665544446654
Done!