Query 007539
Match_columns 599
No_of_seqs 426 out of 2240
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 04:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.1E-68 3.7E-73 643.6 58.0 406 193-599 150-558 (1321)
2 4a82_A Cystic fibrosis transme 100.0 9.7E-66 3.3E-70 572.5 52.6 479 108-599 2-481 (578)
3 3qf4_A ABC transporter, ATP-bi 100.0 2.9E-65 9.9E-70 568.9 55.4 470 110-599 13-483 (587)
4 3qf4_B Uncharacterized ABC tra 100.0 1.4E-65 4.9E-70 573.0 52.6 474 105-599 22-495 (598)
5 3b5x_A Lipid A export ATP-bind 100.0 1E-63 3.5E-68 557.0 63.2 473 105-599 10-484 (582)
6 3b60_A Lipid A export ATP-bind 100.0 8.9E-64 3E-68 557.5 59.1 473 105-599 10-484 (582)
7 2yl4_A ATP-binding cassette SU 100.0 2.3E-63 7.7E-68 555.7 61.6 477 106-599 5-487 (595)
8 4f4c_A Multidrug resistance pr 100.0 2.1E-64 7.2E-69 606.4 42.7 406 193-599 808-1221(1321)
9 3g5u_A MCG1178, multidrug resi 100.0 6.3E-62 2.1E-66 583.7 49.4 484 108-599 35-530 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 9.8E-56 3.4E-60 530.1 43.9 463 126-599 706-1175(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.4E-41 4.8E-46 345.9 13.5 181 419-599 14-194 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.3E-32 4.6E-37 272.7 16.1 143 457-599 6-149 (247)
13 1mv5_A LMRA, multidrug resista 100.0 2.1E-32 7.3E-37 271.0 12.2 141 459-599 2-143 (243)
14 2ghi_A Transport protein; mult 100.0 3.8E-31 1.3E-35 264.3 14.9 142 457-599 16-159 (260)
15 2ixe_A Antigen peptide transpo 100.0 1E-30 3.5E-35 262.7 15.1 143 457-599 15-160 (271)
16 3gd7_A Fusion complex of cysti 100.0 4.9E-30 1.7E-34 268.9 14.9 144 454-599 15-159 (390)
17 2pze_A Cystic fibrosis transme 100.0 5.2E-28 1.8E-32 237.2 14.4 129 457-599 5-134 (229)
18 2cbz_A Multidrug resistance-as 99.9 1.1E-27 3.6E-32 236.1 11.6 128 458-599 3-131 (237)
19 1ji0_A ABC transporter; ATP bi 99.9 2.8E-26 9.6E-31 226.5 12.0 135 458-599 6-143 (240)
20 3gfo_A Cobalt import ATP-bindi 99.9 2.5E-26 8.6E-31 230.5 9.8 131 458-599 7-147 (275)
21 3tif_A Uncharacterized ABC tra 99.9 4.1E-26 1.4E-30 224.5 10.5 131 459-599 2-149 (235)
22 3tui_C Methionine import ATP-b 99.9 5.7E-26 1.9E-30 234.9 11.0 126 457-582 23-161 (366)
23 2bbs_A Cystic fibrosis transme 99.9 6.6E-26 2.3E-30 229.2 10.9 125 457-599 39-163 (290)
24 4g1u_C Hemin import ATP-bindin 99.9 2.2E-25 7.4E-30 223.1 12.9 120 458-578 11-135 (266)
25 2olj_A Amino acid ABC transpor 99.9 1.7E-25 5.9E-30 223.2 10.7 130 458-599 24-163 (263)
26 2pcj_A ABC transporter, lipopr 99.9 1.6E-25 5.5E-30 218.7 9.9 130 458-599 4-144 (224)
27 2yz2_A Putative ABC transporte 99.9 3E-25 1E-29 222.4 12.0 121 459-582 3-136 (266)
28 1sgw_A Putative ABC transporte 99.9 2.6E-25 8.9E-30 215.0 10.9 124 457-599 9-137 (214)
29 1vpl_A ABC transporter, ATP-bi 99.9 2.6E-25 9E-30 221.1 10.4 130 457-599 14-150 (256)
30 2qi9_C Vitamin B12 import ATP- 99.9 1.3E-24 4.3E-29 215.3 13.3 125 458-599 4-130 (249)
31 2ihy_A ABC transporter, ATP-bi 99.9 4.9E-25 1.7E-29 221.9 9.4 130 458-599 21-165 (279)
32 1g6h_A High-affinity branched- 99.9 1.7E-24 5.8E-29 215.9 12.8 98 458-556 7-106 (257)
33 1b0u_A Histidine permease; ABC 99.9 8.7E-25 3E-29 218.5 10.5 122 458-580 6-149 (262)
34 3fvq_A Fe(3+) IONS import ATP- 99.9 7.3E-25 2.5E-29 226.5 9.9 124 458-582 4-136 (359)
35 2v9p_A Replication protein E1; 99.9 4.3E-27 1.5E-31 238.4 -6.7 168 389-599 35-204 (305)
36 1z47_A CYSA, putative ABC-tran 99.9 7.7E-25 2.6E-29 226.5 9.8 124 457-582 13-143 (355)
37 3rlf_A Maltose/maltodextrin im 99.9 9.7E-25 3.3E-29 227.1 9.9 122 458-582 3-131 (381)
38 2yyz_A Sugar ABC transporter, 99.9 2.5E-24 8.6E-29 223.2 12.7 122 458-582 3-131 (359)
39 1v43_A Sugar-binding transport 99.9 4.3E-24 1.5E-28 222.5 14.1 128 458-599 11-145 (372)
40 2it1_A 362AA long hypothetical 99.9 1.3E-24 4.3E-29 225.7 9.6 122 458-582 3-131 (362)
41 3d31_A Sulfate/molybdate ABC t 99.9 3.2E-24 1.1E-28 221.7 11.4 120 459-582 2-125 (348)
42 2onk_A Molybdate/tungstate ABC 99.9 4.7E-24 1.6E-28 210.2 10.8 124 459-599 2-130 (240)
43 1oxx_K GLCV, glucose, ABC tran 99.9 2.7E-24 9.2E-29 223.1 9.0 124 458-582 3-138 (353)
44 2d2e_A SUFC protein; ABC-ATPas 99.9 6.3E-24 2.1E-28 210.9 9.1 116 458-574 3-131 (250)
45 1g29_1 MALK, maltose transport 99.9 5.4E-24 1.8E-28 222.2 8.6 122 458-582 3-137 (372)
46 2pjz_A Hypothetical protein ST 99.9 5.2E-24 1.8E-28 212.5 7.0 124 459-599 2-132 (263)
47 2nq2_C Hypothetical ABC transp 99.9 1.9E-23 6.7E-28 207.5 9.0 118 458-599 4-132 (253)
48 2zu0_C Probable ATP-dependent 99.9 1.2E-22 4.2E-27 203.4 12.8 97 458-555 20-120 (267)
49 2gza_A Type IV secretion syste 99.8 8.9E-26 3.1E-30 236.3 -23.8 205 385-595 55-287 (361)
50 2f1r_A Molybdopterin-guanine d 99.7 1.1E-18 3.9E-23 162.3 -1.6 93 486-599 3-107 (171)
51 2eyu_A Twitching motility prot 99.6 8E-18 2.7E-22 167.8 -3.5 129 459-599 6-176 (261)
52 2iw3_A Elongation factor 3A; a 99.6 1.2E-16 4.1E-21 183.3 4.8 74 458-542 671-745 (986)
53 3bk7_A ABC transporter ATP-bin 99.6 3.1E-16 1E-20 173.9 5.0 104 458-576 357-463 (607)
54 1yqt_A RNAse L inhibitor; ATP- 99.6 3.1E-16 1.1E-20 172.0 5.0 116 458-599 287-405 (538)
55 3ozx_A RNAse L inhibitor; ATP 99.6 6.5E-16 2.2E-20 169.0 7.0 117 458-599 269-389 (538)
56 2ewv_A Twitching motility prot 99.6 1.2E-16 4.2E-21 167.4 0.6 120 473-599 126-287 (372)
57 3bk7_A ABC transporter ATP-bin 99.6 2.8E-16 9.6E-21 174.2 2.1 116 458-577 83-221 (607)
58 1yqt_A RNAse L inhibitor; ATP- 99.5 7.1E-16 2.4E-20 169.2 1.7 114 459-576 21-150 (538)
59 1lw7_A Transcriptional regulat 99.5 7.9E-17 2.7E-21 169.0 -6.5 124 474-599 157-300 (365)
60 2pt7_A CAG-ALFA; ATPase, prote 99.5 1.6E-17 5.3E-22 171.4 -14.8 167 393-572 75-261 (330)
61 1z6g_A Guanylate kinase; struc 99.5 1.2E-15 4.1E-20 148.2 -1.6 92 473-572 11-114 (218)
62 3aez_A Pantothenate kinase; tr 99.5 7.3E-16 2.5E-20 157.4 -4.5 81 456-556 41-144 (312)
63 2dpy_A FLII, flagellum-specifi 99.5 2.8E-15 9.6E-20 159.9 -2.5 99 457-556 130-238 (438)
64 1htw_A HI0065; nucleotide-bind 99.4 2.4E-15 8.2E-20 138.0 -3.0 88 462-556 11-99 (158)
65 1lvg_A Guanylate kinase, GMP k 99.4 1.9E-15 6.6E-20 144.4 -4.2 99 482-590 1-112 (198)
66 2iw3_A Elongation factor 3A; a 99.4 3E-13 1E-17 155.3 12.3 107 457-579 434-543 (986)
67 3j16_B RLI1P; ribosome recycli 99.4 7.9E-14 2.7E-18 154.3 6.3 103 462-577 350-460 (608)
68 2npi_A Protein CLP1; CLP1-PCF1 99.4 1.7E-15 5.9E-20 162.5 -9.0 83 458-557 118-206 (460)
69 3j16_B RLI1P; ribosome recycli 99.4 7.5E-14 2.6E-18 154.5 3.5 117 463-581 82-218 (608)
70 3b9q_A Chloroplast SRP recepto 99.3 2.6E-13 8.9E-18 137.9 3.1 81 476-556 91-179 (302)
71 1tq4_A IIGP1, interferon-induc 99.3 5.2E-14 1.8E-18 148.4 -3.3 93 472-576 36-148 (413)
72 3b85_A Phosphate starvation-in 99.3 1.1E-13 3.9E-18 132.8 -1.9 63 472-542 13-75 (208)
73 3ozx_A RNAse L inhibitor; ATP 99.3 3.8E-13 1.3E-17 147.1 0.8 111 463-577 4-131 (538)
74 2og2_A Putative signal recogni 99.3 8.8E-13 3E-17 136.6 3.3 81 476-556 148-236 (359)
75 3ux8_A Excinuclease ABC, A sub 99.3 1.2E-12 4.1E-17 147.9 4.0 82 471-556 30-159 (670)
76 3sop_A Neuronal-specific septi 99.3 3.4E-13 1.2E-17 134.9 -0.7 69 487-558 4-73 (270)
77 2yhs_A FTSY, cell division pro 99.2 1.7E-12 5.9E-17 138.3 3.4 82 475-556 283-371 (503)
78 2qag_B Septin-6, protein NEDD5 99.2 2.5E-13 8.6E-18 143.0 -3.5 93 458-562 16-111 (427)
79 3ux8_A Excinuclease ABC, A sub 99.2 1.1E-12 3.9E-17 148.1 1.5 57 471-527 334-411 (670)
80 1sq5_A Pantothenate kinase; P- 99.2 2.5E-13 8.5E-18 138.8 -3.8 91 457-555 36-151 (308)
81 1znw_A Guanylate kinase, GMP k 99.2 3.6E-13 1.2E-17 129.5 -2.5 77 471-553 8-85 (207)
82 2jeo_A Uridine-cytidine kinase 99.2 2.2E-12 7.7E-17 127.3 3.1 72 470-555 10-81 (245)
83 4e22_A Cytidylate kinase; P-lo 99.2 5E-13 1.7E-17 132.6 -1.9 109 474-592 19-145 (252)
84 1u0l_A Probable GTPase ENGC; p 99.2 1.7E-12 5.8E-17 132.2 1.5 103 480-583 164-290 (301)
85 2qm8_A GTPase/ATPase; G protei 99.2 1.5E-13 5.2E-18 142.0 -8.1 87 459-546 30-120 (337)
86 3szr_A Interferon-induced GTP- 99.2 8.2E-13 2.8E-17 147.1 -3.0 95 458-555 10-120 (608)
87 4aby_A DNA repair protein RECN 99.2 4.5E-12 1.5E-16 135.0 2.6 90 458-556 42-170 (415)
88 3asz_A Uridine kinase; cytidin 99.2 5.1E-12 1.7E-16 121.5 2.6 89 481-593 2-96 (211)
89 1rj9_A FTSY, signal recognitio 99.2 2.1E-11 7E-16 123.9 6.4 72 484-555 101-179 (304)
90 3c8u_A Fructokinase; YP_612366 99.1 7.9E-13 2.7E-17 127.2 -4.7 94 482-599 19-115 (208)
91 1odf_A YGR205W, hypothetical 3 99.1 7.5E-13 2.6E-17 133.7 -5.5 101 483-599 29-138 (290)
92 2obl_A ESCN; ATPase, hydrolase 99.1 9.4E-12 3.2E-16 128.7 1.7 83 458-541 45-134 (347)
93 3euj_A Chromosome partition pr 99.1 1.6E-11 5.4E-16 131.4 3.4 80 460-543 8-95 (483)
94 2vf7_A UVRA2, excinuclease ABC 99.1 2.2E-11 7.6E-16 138.6 4.0 65 457-527 501-598 (842)
95 1tf7_A KAIC; homohexamer, hexa 99.1 6.7E-12 2.3E-16 137.8 -0.4 76 467-543 20-98 (525)
96 2yv5_A YJEQ protein; hydrolase 99.1 2.2E-11 7.5E-16 123.9 2.4 98 480-580 160-283 (302)
97 1cke_A CK, MSSA, protein (cyti 99.1 2.2E-12 7.7E-17 125.4 -4.8 108 484-598 4-130 (227)
98 1s96_A Guanylate kinase, GMP k 99.0 1.1E-11 3.8E-16 120.0 -1.7 87 481-571 12-107 (219)
99 3e70_C DPA, signal recognition 99.0 8.6E-11 2.9E-15 120.5 4.5 76 481-556 125-207 (328)
100 1t9h_A YLOQ, probable GTPase E 99.0 4E-11 1.4E-15 121.5 1.7 96 480-577 168-288 (307)
101 3ney_A 55 kDa erythrocyte memb 99.0 6.6E-12 2.3E-16 118.8 -3.9 84 479-571 13-109 (197)
102 2rcn_A Probable GTPase ENGC; Y 99.0 6.5E-11 2.2E-15 122.2 3.0 99 473-579 204-309 (358)
103 3pih_A Uvrabc system protein A 99.0 2.8E-10 9.6E-15 130.6 8.2 39 458-502 589-627 (916)
104 1zp6_A Hypothetical protein AT 99.0 5.2E-11 1.8E-15 112.4 1.0 70 481-555 5-74 (191)
105 1pui_A ENGB, probable GTP-bind 99.0 1.8E-11 6.1E-16 117.3 -2.8 56 459-518 4-64 (210)
106 2r6f_A Excinuclease ABC subuni 99.0 2.6E-10 8.8E-15 130.2 6.1 43 458-506 629-671 (972)
107 3tr0_A Guanylate kinase, GMP k 99.0 9.8E-11 3.4E-15 111.7 2.2 71 479-553 1-72 (205)
108 1p9r_A General secretion pathw 99.0 1.1E-11 3.7E-16 131.2 -5.1 102 474-577 158-288 (418)
109 1e69_A Chromosome segregation 99.0 2.4E-10 8.2E-15 117.4 4.6 91 458-556 5-146 (322)
110 3lnc_A Guanylate kinase, GMP k 98.9 6.8E-11 2.3E-15 115.4 -0.3 58 473-532 15-85 (231)
111 1qhl_A Protein (cell division 98.9 2E-11 6.8E-16 118.4 -4.6 75 458-541 9-91 (227)
112 2ygr_A Uvrabc system protein A 98.9 4.6E-10 1.6E-14 128.5 5.3 44 457-506 646-689 (993)
113 1kgd_A CASK, peripheral plasma 98.9 8.8E-11 3E-15 110.1 -0.9 82 483-571 3-95 (180)
114 4a74_A DNA repair and recombin 98.9 2.8E-10 9.7E-15 110.4 2.5 72 481-558 21-99 (231)
115 2qag_C Septin-7; cell cycle, c 98.9 9.1E-11 3.1E-15 124.0 -1.5 91 457-558 10-101 (418)
116 1pzn_A RAD51, DNA repair and r 98.9 3.1E-10 1.1E-14 117.7 2.1 100 473-581 118-225 (349)
117 2i3b_A HCR-ntpase, human cance 98.9 1.8E-10 6.1E-15 108.7 -1.1 54 485-542 1-54 (189)
118 2oap_1 GSPE-2, type II secreti 98.8 1.2E-09 4E-14 118.7 4.7 96 473-572 248-354 (511)
119 1nij_A Hypothetical protein YJ 98.8 2.1E-10 7.3E-15 117.5 -3.8 73 486-558 5-104 (318)
120 3a00_A Guanylate kinase, GMP k 98.8 5.3E-10 1.8E-14 105.2 -0.8 78 485-571 1-91 (186)
121 2o8b_B DNA mismatch repair pro 98.8 2E-09 6.8E-14 125.7 3.2 74 457-553 749-835 (1022)
122 4gp7_A Metallophosphoesterase; 98.8 1.4E-09 4.7E-14 101.0 1.2 30 477-506 1-30 (171)
123 3nwj_A ATSK2; P loop, shikimat 98.7 1.3E-09 4.5E-14 107.4 -0.1 52 458-509 17-72 (250)
124 2qnr_A Septin-2, protein NEDD5 98.7 5E-09 1.7E-13 106.4 3.6 85 462-557 2-88 (301)
125 2ehv_A Hypothetical protein PH 98.7 1.4E-09 4.8E-14 106.9 -1.0 80 459-542 7-88 (251)
126 1cr0_A DNA primase/helicase; R 98.7 1.6E-09 5.4E-14 109.8 -0.7 69 472-543 22-91 (296)
127 2qt1_A Nicotinamide riboside k 98.7 1.3E-09 4.6E-14 104.2 -1.5 54 479-558 15-68 (207)
128 2j41_A Guanylate kinase; GMP, 98.7 2.5E-09 8.4E-14 102.0 -0.3 61 480-543 1-61 (207)
129 3jvv_A Twitching mobility prot 98.7 1.2E-08 4.2E-13 105.7 4.9 104 462-570 92-215 (356)
130 1ye8_A Protein THEP1, hypothet 98.6 5.6E-09 1.9E-13 97.5 0.2 52 486-542 1-52 (178)
131 3uie_A Adenylyl-sulfate kinase 98.6 1.8E-09 6.3E-14 102.8 -3.4 61 463-525 4-66 (200)
132 4eun_A Thermoresistant glucoki 98.6 1.1E-08 3.9E-13 97.2 1.8 70 479-554 23-94 (200)
133 1ewq_A DNA mismatch repair pro 98.6 1.6E-08 5.4E-13 114.6 3.1 83 456-557 548-636 (765)
134 3tau_A Guanylate kinase, GMP k 98.5 4.8E-09 1.7E-13 100.5 -2.6 71 483-557 6-87 (208)
135 2x8a_A Nuclear valosin-contain 98.5 1.2E-08 4.1E-13 102.1 -0.0 80 473-556 34-115 (274)
136 1zu4_A FTSY; GTPase, signal re 98.5 3.4E-08 1.2E-12 100.8 3.2 82 474-555 94-186 (320)
137 2bbw_A Adenylate kinase 4, AK4 98.5 9.7E-09 3.3E-13 101.1 -1.0 68 484-555 26-97 (246)
138 2bdt_A BH3686; alpha-beta prot 98.5 1.8E-08 6.3E-13 94.7 0.7 62 485-555 2-64 (189)
139 3ice_A Transcription terminati 98.5 2E-08 6.9E-13 103.1 0.4 55 456-510 131-199 (422)
140 1n0w_A DNA repair protein RAD5 98.5 5.3E-08 1.8E-12 95.1 3.0 77 481-565 20-104 (243)
141 2dy1_A Elongation factor G; tr 98.4 1.7E-08 5.8E-13 113.4 -2.2 107 479-587 3-113 (665)
142 3kta_A Chromosome segregation 98.4 1.8E-08 6.3E-13 94.0 -1.7 99 476-575 18-136 (182)
143 3vaa_A Shikimate kinase, SK; s 98.4 9.2E-08 3.1E-12 90.8 2.6 43 467-509 5-49 (199)
144 3cr8_A Sulfate adenylyltranfer 98.4 1.4E-08 4.7E-13 111.0 -3.6 90 479-573 363-468 (552)
145 1in4_A RUVB, holliday junction 98.4 4.1E-09 1.4E-13 108.7 -7.4 90 463-554 23-123 (334)
146 3lda_A DNA repair protein RAD5 98.4 1.1E-07 3.9E-12 99.8 3.2 71 481-558 174-252 (400)
147 2vp4_A Deoxynucleoside kinase; 98.4 1.7E-08 5.7E-13 98.4 -3.4 64 479-546 14-87 (230)
148 2w0m_A SSO2452; RECA, SSPF, un 98.3 5.5E-08 1.9E-12 94.1 -0.1 68 471-541 8-79 (235)
149 1svm_A Large T antigen; AAA+ f 98.3 1.3E-07 4.6E-12 98.4 1.3 64 473-544 157-220 (377)
150 1iy2_A ATP-dependent metallopr 98.2 6.3E-08 2.1E-12 97.0 -2.7 89 460-553 51-141 (278)
151 1ixz_A ATP-dependent metallopr 98.2 6.6E-08 2.2E-12 95.5 -2.8 90 459-553 26-117 (254)
152 1knq_A Gluconate kinase; ALFA/ 98.1 7.8E-07 2.7E-11 82.2 2.4 54 483-542 6-60 (175)
153 1ls1_A Signal recognition part 98.1 3E-07 1E-11 92.9 -1.5 62 459-525 77-138 (295)
154 2kjq_A DNAA-related protein; s 98.1 1.8E-06 6.1E-11 77.9 3.8 47 474-526 30-78 (149)
155 3thx_A DNA mismatch repair pro 98.1 7.3E-06 2.5E-10 94.6 9.7 60 457-516 630-701 (934)
156 1rz3_A Hypothetical protein rb 98.1 8.9E-07 3.1E-11 84.1 1.6 48 481-528 18-65 (201)
157 2cvh_A DNA repair and recombin 98.0 1.9E-06 6.4E-11 82.5 3.4 79 472-558 6-85 (220)
158 3tqc_A Pantothenate kinase; bi 98.0 1.2E-06 4.2E-11 89.0 0.9 45 472-516 73-125 (321)
159 1udx_A The GTP-binding protein 98.0 3E-06 1E-10 89.4 3.3 47 474-520 146-203 (416)
160 1vma_A Cell division protein F 97.9 2.1E-06 7.1E-11 87.0 2.0 65 478-542 97-167 (306)
161 1sxj_E Activator 1 40 kDa subu 97.9 2.5E-06 8.5E-11 88.2 2.5 57 486-544 37-94 (354)
162 1oix_A RAS-related protein RAB 97.9 1.3E-06 4.6E-11 82.0 -0.1 37 487-523 31-78 (191)
163 1f6b_A SAR1; gtpases, N-termin 97.9 3.3E-06 1.1E-10 79.7 2.6 58 465-523 6-71 (198)
164 2pez_A Bifunctional 3'-phospho 97.9 1.1E-06 3.8E-11 81.6 -1.1 41 483-524 3-45 (179)
165 1tf7_A KAIC; homohexamer, hexa 97.9 2.2E-06 7.7E-11 93.7 0.9 53 459-515 258-310 (525)
166 3thx_B DNA mismatch repair pro 97.9 1.2E-05 4.1E-10 92.6 6.7 51 457-507 639-695 (918)
167 1nlf_A Regulatory protein REPA 97.8 7.5E-06 2.6E-10 81.8 3.6 34 481-516 26-59 (279)
168 3ec2_A DNA replication protein 97.8 2.8E-06 9.7E-11 78.9 0.0 37 479-515 32-68 (180)
169 3k1j_A LON protease, ATP-depen 97.8 4.4E-06 1.5E-10 93.0 1.4 67 471-542 46-113 (604)
170 2dhr_A FTSH; AAA+ protein, hex 97.7 7.3E-06 2.5E-10 88.4 2.2 92 460-556 42-136 (499)
171 2px0_A Flagellar biosynthesis 97.7 1.1E-05 3.9E-10 81.2 3.3 42 483-524 103-145 (296)
172 3m6a_A ATP-dependent protease 97.7 5.8E-06 2E-10 90.7 1.2 79 462-542 87-165 (543)
173 3r20_A Cytidylate kinase; stru 97.7 1.8E-06 6E-11 83.8 -2.7 71 484-554 8-96 (233)
174 1wb9_A DNA mismatch repair pro 97.7 1.4E-05 4.9E-10 91.0 4.2 85 457-558 576-668 (800)
175 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 1.6E-05 5.5E-10 83.0 4.1 40 481-520 16-67 (392)
176 2f9l_A RAB11B, member RAS onco 97.7 1.7E-05 5.7E-10 74.8 3.3 37 487-523 7-54 (199)
177 4eaq_A DTMP kinase, thymidylat 97.7 1.4E-05 4.7E-10 77.5 2.7 44 475-519 13-59 (229)
178 1m7g_A Adenylylsulfate kinase; 97.7 5.5E-06 1.9E-10 79.1 -0.3 45 480-524 20-66 (211)
179 1mky_A Probable GTP-binding pr 97.7 1.8E-05 6.2E-10 84.5 3.6 70 486-555 181-263 (439)
180 1kag_A SKI, shikimate kinase I 97.6 1.7E-05 5.8E-10 72.8 2.7 33 484-520 3-35 (173)
181 2qor_A Guanylate kinase; phosp 97.6 9.7E-06 3.3E-10 77.0 1.0 29 482-510 9-37 (204)
182 2p67_A LAO/AO transport system 97.6 8.6E-06 3E-10 83.9 0.5 52 473-524 44-95 (341)
183 2o5v_A DNA replication and rep 97.6 5.4E-05 1.8E-09 78.2 6.0 33 474-507 16-48 (359)
184 4ad8_A DNA repair protein RECN 97.6 1.5E-05 5E-10 87.0 1.3 79 458-545 42-159 (517)
185 1w1w_A Structural maintenance 97.6 2.8E-05 9.6E-10 82.8 3.2 50 458-514 6-55 (430)
186 2jaq_A Deoxyguanosine kinase; 97.5 4.1E-06 1.4E-10 79.1 -3.5 69 487-555 2-86 (205)
187 1uf9_A TT1252 protein; P-loop, 97.5 5.6E-06 1.9E-10 78.2 -3.0 33 485-522 8-40 (203)
188 2www_A Methylmalonic aciduria 97.4 3.1E-05 1.1E-09 80.0 1.7 42 483-524 72-113 (349)
189 1m2o_B GTP-binding protein SAR 97.4 7.4E-05 2.5E-09 69.8 4.0 50 473-523 12-69 (190)
190 2dr3_A UPF0273 protein PH0284; 97.4 2E-05 6.7E-10 76.7 -0.2 67 471-541 8-79 (247)
191 2gj8_A MNME, tRNA modification 97.4 8.7E-05 3E-09 68.1 4.1 41 483-523 2-54 (172)
192 2ffh_A Protein (FFH); SRP54, s 97.4 4.7E-05 1.6E-09 80.3 2.5 62 461-527 79-140 (425)
193 3t34_A Dynamin-related protein 97.4 7.4E-05 2.5E-09 77.5 3.7 45 472-519 24-70 (360)
194 1sxj_C Activator 1 40 kDa subu 97.3 1.1E-05 3.6E-10 83.2 -3.3 69 472-540 31-102 (340)
195 3hr8_A Protein RECA; alpha and 97.3 7.1E-05 2.4E-09 77.1 2.7 62 481-545 57-119 (356)
196 1y63_A LMAJ004144AAA protein; 97.3 0.00011 3.7E-09 68.4 3.4 32 477-508 2-33 (184)
197 2qtf_A Protein HFLX, GTP-bindi 97.3 9.6E-05 3.3E-09 76.6 3.3 50 487-542 181-241 (364)
198 3qf7_A RAD50; ABC-ATPase, ATPa 97.3 0.00011 3.8E-09 76.3 3.6 31 475-506 14-44 (365)
199 1j8m_F SRP54, signal recogniti 97.3 4.5E-05 1.5E-09 76.8 0.3 48 478-526 92-139 (297)
200 2vf7_A UVRA2, excinuclease ABC 97.3 0.00013 4.4E-09 83.2 4.0 40 457-502 14-53 (842)
201 2ius_A DNA translocase FTSK; n 97.2 0.00017 5.9E-09 77.6 3.4 56 477-532 159-216 (512)
202 2r6f_A Excinuclease ABC subuni 97.1 0.00019 6.6E-09 82.2 3.8 39 458-502 23-61 (972)
203 2ygr_A Uvrabc system protein A 97.1 0.0002 6.7E-09 82.4 3.8 39 458-502 25-63 (993)
204 2yvu_A Probable adenylyl-sulfa 97.1 0.00014 4.9E-09 67.6 2.2 42 481-522 9-51 (186)
205 3t61_A Gluconokinase; PSI-biol 97.1 0.00012 4.1E-09 69.1 1.5 35 485-523 18-52 (202)
206 2p5t_B PEZT; postsegregational 97.1 0.00013 4.5E-09 71.6 1.6 43 481-525 28-70 (253)
207 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.0003 1E-08 63.1 3.7 29 477-506 16-44 (149)
208 3pih_A Uvrabc system protein A 97.1 0.00019 6.6E-09 82.5 3.0 30 473-502 12-41 (916)
209 1jjv_A Dephospho-COA kinase; P 97.1 0.00027 9.2E-09 66.8 3.4 29 487-520 4-32 (206)
210 2qag_A Septin-2, protein NEDD5 97.0 6.1E-05 2.1E-09 78.1 -1.4 51 457-514 16-66 (361)
211 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00033 1.1E-08 72.9 3.8 41 481-521 18-69 (396)
212 2wji_A Ferrous iron transport 97.0 0.00062 2.1E-08 61.7 4.9 24 486-509 4-27 (165)
213 1np6_A Molybdopterin-guanine d 97.0 0.00029 9.8E-09 65.0 2.6 39 485-523 6-47 (174)
214 1ypw_A Transitional endoplasmi 97.0 8.5E-05 2.9E-09 85.2 -1.2 62 479-542 232-293 (806)
215 1ex7_A Guanylate kinase; subst 96.9 0.00034 1.2E-08 65.2 2.5 45 488-534 4-61 (186)
216 1lv7_A FTSH; alpha/beta domain 96.9 0.00017 5.7E-09 70.9 0.4 48 475-526 37-84 (257)
217 2wjg_A FEOB, ferrous iron tran 96.9 0.00049 1.7E-08 63.5 3.6 37 486-522 8-55 (188)
218 2zej_A Dardarin, leucine-rich 96.8 0.00056 1.9E-08 63.2 3.5 23 487-509 4-26 (184)
219 2if2_A Dephospho-COA kinase; a 96.8 0.00061 2.1E-08 64.2 3.4 21 487-507 3-23 (204)
220 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00068 2.3E-08 71.0 3.9 55 464-519 11-69 (392)
221 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00032 1.1E-08 71.7 0.9 37 473-509 10-48 (359)
222 2dby_A GTP-binding protein; GD 96.7 0.00033 1.1E-08 72.6 1.0 59 487-576 3-61 (368)
223 1qhx_A CPT, protein (chloramph 96.7 0.00084 2.9E-08 61.6 3.7 26 484-509 2-27 (178)
224 3ihw_A Centg3; RAS, centaurin, 96.7 0.0015 5.1E-08 60.4 5.3 37 487-523 22-67 (184)
225 3cm0_A Adenylate kinase; ATP-b 96.7 0.00073 2.5E-08 62.5 2.9 25 483-507 2-26 (186)
226 4a82_A Cystic fibrosis transme 96.6 0.88 3E-05 49.8 27.3 14 459-472 355-368 (578)
227 1gtv_A TMK, thymidylate kinase 96.6 0.0003 1E-08 66.7 -0.6 26 487-512 2-27 (214)
228 3kb2_A SPBC2 prophage-derived 96.5 0.0012 4E-08 60.0 3.3 24 486-509 2-25 (173)
229 2zr9_A Protein RECA, recombina 96.5 0.0011 3.7E-08 68.3 3.3 62 481-545 57-119 (349)
230 2z43_A DNA repair and recombin 96.5 0.00084 2.9E-08 68.4 2.4 69 481-558 103-181 (324)
231 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.6E-08 60.8 3.5 26 484-509 2-27 (192)
232 3trf_A Shikimate kinase, SK; a 96.5 0.0013 4.6E-08 60.6 3.5 26 484-509 4-29 (185)
233 2v54_A DTMP kinase, thymidylat 96.5 0.0014 4.9E-08 61.4 3.7 27 483-509 2-28 (204)
234 1fzq_A ADP-ribosylation factor 96.5 0.0014 4.7E-08 60.4 3.5 39 485-523 16-62 (181)
235 3qks_A DNA double-strand break 96.4 0.0016 5.6E-08 61.4 3.7 29 477-506 16-44 (203)
236 1vht_A Dephospho-COA kinase; s 96.4 0.0016 5.6E-08 61.9 3.7 32 484-520 3-34 (218)
237 1gvn_B Zeta; postsegregational 96.4 0.0017 5.7E-08 65.0 3.7 36 483-520 31-66 (287)
238 1v5w_A DMC1, meiotic recombina 96.4 0.0014 4.9E-08 67.2 3.3 69 481-558 118-196 (343)
239 2rhm_A Putative kinase; P-loop 96.4 0.0015 5.1E-08 60.6 3.1 27 483-509 3-29 (193)
240 3iij_A Coilin-interacting nucl 96.4 0.0013 4.4E-08 60.6 2.5 28 482-509 8-35 (180)
241 1q3t_A Cytidylate kinase; nucl 96.4 0.0017 5.8E-08 62.8 3.4 26 482-507 13-38 (236)
242 1ega_A Protein (GTP-binding pr 96.4 0.0011 3.9E-08 66.7 2.2 26 484-509 7-32 (301)
243 1ko7_A HPR kinase/phosphatase; 96.3 0.0012 4E-08 66.5 2.1 44 474-518 134-181 (314)
244 3lxx_A GTPase IMAP family memb 96.3 0.0023 8E-08 61.8 4.1 28 487-514 31-58 (239)
245 1jal_A YCHF protein; nucleotid 96.3 0.0029 1E-07 65.1 4.9 36 485-520 2-48 (363)
246 3lw7_A Adenylate kinase relate 96.3 0.002 6.8E-08 58.4 3.2 20 486-505 2-21 (179)
247 2c95_A Adenylate kinase 1; tra 96.3 0.002 6.9E-08 59.9 3.3 27 483-509 7-33 (196)
248 2wwf_A Thymidilate kinase, put 96.3 0.0021 7.3E-08 60.6 3.4 28 482-509 7-34 (212)
249 1nn5_A Similar to deoxythymidy 96.2 0.0024 8E-08 60.4 3.4 27 482-508 6-32 (215)
250 2plr_A DTMP kinase, probable t 96.2 0.0024 8.3E-08 60.1 3.4 28 484-511 3-30 (213)
251 3qkt_A DNA double-strand break 96.2 0.0025 8.6E-08 65.3 3.6 34 477-511 16-50 (339)
252 1xjc_A MOBB protein homolog; s 96.2 0.0019 6.3E-08 59.1 2.3 36 486-521 5-43 (169)
253 2bwj_A Adenylate kinase 5; pho 96.2 0.0011 3.9E-08 61.7 0.9 29 481-509 8-36 (199)
254 3kl4_A SRP54, signal recogniti 96.2 0.0013 4.5E-08 69.3 1.5 41 484-524 96-136 (433)
255 1via_A Shikimate kinase; struc 96.1 0.0022 7.4E-08 58.8 2.7 23 487-509 6-28 (175)
256 3qf4_A ABC transporter, ATP-bi 96.1 2.1 7.3E-05 46.8 32.4 15 458-472 356-370 (587)
257 2ze6_A Isopentenyl transferase 96.0 0.0027 9.2E-08 62.2 2.9 23 487-509 3-25 (253)
258 2vli_A Antibiotic resistance p 96.0 0.0025 8.4E-08 58.6 2.3 27 483-509 3-29 (183)
259 1tev_A UMP-CMP kinase; ploop, 96.0 0.0035 1.2E-07 58.1 3.3 26 484-509 2-27 (196)
260 1ly1_A Polynucleotide kinase; 96.0 0.0036 1.2E-07 57.2 3.3 22 486-507 3-24 (181)
261 1aky_A Adenylate kinase; ATP:A 95.9 0.0041 1.4E-07 59.3 3.7 27 483-509 2-28 (220)
262 3cbq_A GTP-binding protein REM 95.9 0.0032 1.1E-07 58.7 2.7 22 487-508 25-46 (195)
263 2r6a_A DNAB helicase, replicat 95.9 0.0018 6.1E-08 69.2 0.8 60 472-534 190-250 (454)
264 3cf0_A Transitional endoplasmi 95.9 0.0024 8.1E-08 64.3 1.6 42 479-522 43-84 (301)
265 2lkc_A Translation initiation 95.8 0.011 3.7E-07 53.5 6.0 25 483-507 6-30 (178)
266 2cdn_A Adenylate kinase; phosp 95.8 0.0049 1.7E-07 57.8 3.7 26 484-509 19-44 (201)
267 1nks_A Adenylate kinase; therm 95.8 0.0041 1.4E-07 57.5 3.1 24 487-510 3-26 (194)
268 2erx_A GTP-binding protein DI- 95.8 0.0079 2.7E-07 53.9 4.9 21 487-507 5-25 (172)
269 1zd8_A GTP:AMP phosphotransfer 95.8 0.0047 1.6E-07 59.1 3.3 27 483-509 5-31 (227)
270 2iyv_A Shikimate kinase, SK; t 95.8 0.0043 1.5E-07 57.1 2.9 25 485-509 2-26 (184)
271 1zuh_A Shikimate kinase; alpha 95.8 0.0052 1.8E-07 55.7 3.4 24 485-508 7-30 (168)
272 3fb4_A Adenylate kinase; psych 95.7 0.0049 1.7E-07 58.4 3.2 23 487-509 2-24 (216)
273 1e6c_A Shikimate kinase; phosp 95.7 0.0049 1.7E-07 56.0 3.0 24 486-509 3-26 (173)
274 2grj_A Dephospho-COA kinase; T 95.7 0.0054 1.8E-07 57.3 3.2 24 485-508 12-35 (192)
275 1zak_A Adenylate kinase; ATP:A 95.7 0.0048 1.6E-07 58.8 3.0 26 484-509 4-29 (222)
276 1qf9_A UMP/CMP kinase, protein 95.7 0.0048 1.6E-07 57.0 2.9 25 485-509 6-30 (194)
277 2z0h_A DTMP kinase, thymidylat 95.7 0.0055 1.9E-07 56.9 3.2 23 487-509 2-24 (197)
278 2pt5_A Shikimate kinase, SK; a 95.6 0.0058 2E-07 55.2 3.3 23 487-509 2-24 (168)
279 2ew1_A RAS-related protein RAB 95.6 0.0088 3E-07 56.1 4.6 21 487-507 28-48 (201)
280 1ukz_A Uridylate kinase; trans 95.6 0.0056 1.9E-07 57.3 3.2 26 484-509 14-39 (203)
281 3ake_A Cytidylate kinase; CMP 95.6 0.0053 1.8E-07 57.6 3.0 23 487-509 4-26 (208)
282 3a8t_A Adenylate isopentenyltr 95.6 0.0066 2.3E-07 61.6 3.8 28 483-510 38-65 (339)
283 1a7j_A Phosphoribulokinase; tr 95.6 0.0032 1.1E-07 63.0 1.4 26 484-509 4-29 (290)
284 3dl0_A Adenylate kinase; phosp 95.6 0.0059 2E-07 57.9 3.2 23 487-509 2-24 (216)
285 3lxw_A GTPase IMAP family memb 95.6 0.006 2E-07 59.4 3.3 24 486-509 22-45 (247)
286 3tlx_A Adenylate kinase 2; str 95.6 0.0063 2.1E-07 59.1 3.4 27 483-509 27-53 (243)
287 3q72_A GTP-binding protein RAD 95.6 0.0059 2E-07 54.7 2.9 23 487-509 4-26 (166)
288 1z0j_A RAB-22, RAS-related pro 95.5 0.009 3.1E-07 53.5 4.1 28 487-514 8-40 (170)
289 1ksh_A ARF-like protein 2; sma 95.5 0.014 4.9E-07 53.3 5.5 40 483-522 16-63 (186)
290 1z2a_A RAS-related protein RAB 95.5 0.0062 2.1E-07 54.5 3.0 22 487-508 7-28 (168)
291 2pbr_A DTMP kinase, thymidylat 95.5 0.0071 2.4E-07 55.9 3.3 23 487-509 2-24 (195)
292 2nzj_A GTP-binding protein REM 95.4 0.0077 2.6E-07 54.3 3.4 23 487-509 6-28 (175)
293 3q85_A GTP-binding protein REM 95.4 0.0079 2.7E-07 54.0 3.3 23 487-509 4-26 (169)
294 3t5d_A Septin-7; GTP-binding p 95.4 0.0066 2.3E-07 60.0 3.0 22 487-508 10-31 (274)
295 1uj2_A Uridine-cytidine kinase 95.4 0.0072 2.5E-07 58.9 3.2 23 486-508 23-45 (252)
296 3iby_A Ferrous iron transport 95.4 0.0078 2.7E-07 59.0 3.4 35 487-521 3-48 (256)
297 2oil_A CATX-8, RAS-related pro 95.4 0.0097 3.3E-07 54.9 3.9 21 487-507 27-47 (193)
298 1kao_A RAP2A; GTP-binding prot 95.4 0.0075 2.6E-07 53.7 3.0 21 487-507 5-25 (167)
299 2ged_A SR-beta, signal recogni 95.4 0.0076 2.6E-07 55.6 3.0 26 484-509 47-72 (193)
300 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.9E-07 55.1 4.1 34 474-508 24-57 (205)
301 2dyk_A GTP-binding protein; GT 95.3 0.0081 2.8E-07 53.4 3.0 23 487-509 3-25 (161)
302 3k53_A Ferrous iron transport 95.3 0.0075 2.6E-07 59.5 3.1 24 487-510 5-28 (271)
303 3clv_A RAB5 protein, putative; 95.3 0.01 3.6E-07 54.8 3.9 23 486-508 8-30 (208)
304 3llm_A ATP-dependent RNA helic 95.3 0.0062 2.1E-07 58.7 2.4 26 481-506 72-97 (235)
305 1u8z_A RAS-related protein RAL 95.3 0.008 2.7E-07 53.6 3.0 21 487-507 6-26 (168)
306 2ce2_X GTPase HRAS; signaling 95.3 0.0074 2.5E-07 53.6 2.8 22 487-508 5-26 (166)
307 2ce7_A Cell division protein F 95.3 0.0052 1.8E-07 65.7 1.9 35 473-509 39-73 (476)
308 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.0088 3E-07 58.7 3.4 26 483-508 2-27 (260)
309 1c1y_A RAS-related protein RAP 95.3 0.0083 2.8E-07 53.6 3.0 21 487-507 5-25 (167)
310 1z08_A RAS-related protein RAB 95.3 0.0085 2.9E-07 53.7 3.0 22 487-508 8-29 (170)
311 2bcg_Y Protein YP2, GTP-bindin 95.3 0.015 5.2E-07 54.2 4.9 35 487-521 10-55 (206)
312 2f6r_A COA synthase, bifunctio 95.3 0.0079 2.7E-07 59.8 3.0 23 485-507 75-97 (281)
313 1g16_A RAS-related protein SEC 95.3 0.008 2.7E-07 53.9 2.8 22 487-508 5-26 (170)
314 3tw8_B RAS-related protein RAB 95.2 0.0093 3.2E-07 54.0 3.2 22 487-508 11-32 (181)
315 3be4_A Adenylate kinase; malar 95.2 0.0087 3E-07 56.9 3.1 26 484-509 4-29 (217)
316 1ek0_A Protein (GTP-binding pr 95.2 0.0089 3E-07 53.5 3.0 21 487-507 5-25 (170)
317 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.0091 3.1E-07 54.0 3.0 21 487-507 9-29 (177)
318 3t1o_A Gliding protein MGLA; G 95.2 0.0093 3.2E-07 54.9 3.2 24 487-510 16-39 (198)
319 1ky3_A GTP-binding protein YPT 95.2 0.0091 3.1E-07 54.1 3.0 22 487-508 10-31 (182)
320 1svi_A GTP-binding protein YSX 95.2 0.0085 2.9E-07 55.3 2.9 25 484-508 22-46 (195)
321 1m7b_A RND3/RHOE small GTP-bin 95.2 0.013 4.4E-07 53.7 4.1 28 487-514 9-41 (184)
322 2fn4_A P23, RAS-related protei 95.2 0.0086 2.9E-07 54.3 2.8 22 487-508 11-32 (181)
323 3qf4_B Uncharacterized ABC tra 95.1 4.8 0.00016 44.0 29.0 11 460-470 370-380 (598)
324 3pqc_A Probable GTP-binding pr 95.1 0.0093 3.2E-07 54.8 2.9 24 486-509 24-47 (195)
325 1r2q_A RAS-related protein RAB 95.1 0.01 3.4E-07 53.1 3.0 21 487-507 8-28 (170)
326 3b1v_A Ferrous iron uptake tra 95.1 0.011 3.7E-07 58.5 3.4 24 486-509 4-27 (272)
327 4dsu_A GTPase KRAS, isoform 2B 95.1 0.011 3.6E-07 54.2 3.0 22 487-508 6-27 (189)
328 4fcw_A Chaperone protein CLPB; 95.1 0.0088 3E-07 59.9 2.7 38 485-522 47-85 (311)
329 3t5g_A GTP-binding protein RHE 95.0 0.018 6.3E-07 52.3 4.6 28 487-514 8-40 (181)
330 2cxx_A Probable GTP-binding pr 95.0 0.011 3.6E-07 54.3 2.9 22 487-508 3-24 (190)
331 3bc1_A RAS-related protein RAB 95.0 0.011 3.8E-07 54.2 3.0 21 487-507 13-33 (195)
332 3exa_A TRNA delta(2)-isopenten 95.0 0.012 4.2E-07 58.9 3.5 25 485-509 3-27 (322)
333 2hxs_A RAB-26, RAS-related pro 95.0 0.013 4.3E-07 53.1 3.3 22 487-508 8-29 (178)
334 1r8s_A ADP-ribosylation factor 95.0 0.011 3.9E-07 52.6 3.0 21 487-507 2-22 (164)
335 4bas_A ADP-ribosylation factor 95.0 0.017 5.7E-07 53.4 4.1 30 485-514 17-52 (199)
336 3kkq_A RAS-related protein M-R 94.9 0.021 7.3E-07 51.9 4.7 21 487-507 20-40 (183)
337 2fg5_A RAB-22B, RAS-related pr 94.9 0.016 5.4E-07 53.5 3.9 28 487-514 25-57 (192)
338 2h92_A Cytidylate kinase; ross 94.9 0.0099 3.4E-07 56.3 2.5 25 485-509 3-27 (219)
339 1e4v_A Adenylate kinase; trans 94.9 0.012 4E-07 55.8 3.0 23 487-509 2-24 (214)
340 2g6b_A RAS-related protein RAB 94.9 0.012 4.1E-07 53.3 3.0 21 487-507 12-32 (180)
341 1upt_A ARL1, ADP-ribosylation 94.9 0.012 4.2E-07 52.7 3.0 31 484-514 6-40 (171)
342 2y8e_A RAB-protein 6, GH09086P 94.9 0.011 3.9E-07 53.3 2.8 21 487-507 16-36 (179)
343 1wf3_A GTP-binding protein; GT 94.9 0.013 4.3E-07 58.9 3.3 22 487-508 9-30 (301)
344 2gf0_A GTP-binding protein DI- 94.9 0.019 6.5E-07 53.0 4.3 22 486-507 9-30 (199)
345 1ak2_A Adenylate kinase isoenz 94.9 0.015 5.1E-07 55.9 3.7 26 484-509 15-40 (233)
346 1sky_E F1-ATPase, F1-ATP synth 94.9 0.0074 2.5E-07 63.9 1.5 44 474-518 141-184 (473)
347 1z0f_A RAB14, member RAS oncog 94.8 0.013 4.5E-07 52.9 3.0 22 487-508 17-38 (179)
348 3con_A GTPase NRAS; structural 94.8 0.013 4.4E-07 53.8 3.0 22 487-508 23-44 (190)
349 2efe_B Small GTP-binding prote 94.8 0.013 4.5E-07 53.1 3.0 22 487-508 14-35 (181)
350 3zvl_A Bifunctional polynucleo 94.8 0.014 4.8E-07 61.4 3.6 40 481-524 254-293 (416)
351 2xtp_A GTPase IMAP family memb 94.8 0.013 4.5E-07 57.2 3.1 24 486-509 23-46 (260)
352 3d3q_A TRNA delta(2)-isopenten 94.8 0.013 4.6E-07 59.5 3.2 25 486-510 8-32 (340)
353 1ypw_A Transitional endoplasmi 94.8 0.0019 6.4E-08 74.0 -3.5 47 477-525 503-549 (806)
354 3v9p_A DTMP kinase, thymidylat 94.8 0.013 4.4E-07 56.3 2.9 28 483-510 23-50 (227)
355 1gwn_A RHO-related GTP-binding 94.8 0.019 6.6E-07 53.9 4.1 22 487-508 30-51 (205)
356 2a9k_A RAS-related protein RAL 94.8 0.014 4.7E-07 53.2 3.0 21 487-507 20-40 (187)
357 2xb4_A Adenylate kinase; ATP-b 94.8 0.015 5.1E-07 55.5 3.3 23 487-509 2-24 (223)
358 3auy_A DNA double-strand break 94.8 0.015 5.1E-07 60.2 3.6 30 476-506 17-46 (371)
359 3tmk_A Thymidylate kinase; pho 94.8 0.015 5.2E-07 55.3 3.3 29 483-511 3-31 (216)
360 4edh_A DTMP kinase, thymidylat 94.7 0.016 5.5E-07 55.0 3.3 28 483-510 4-31 (213)
361 1zd9_A ADP-ribosylation factor 94.7 0.02 6.8E-07 52.7 3.9 22 486-507 23-44 (188)
362 2gf9_A RAS-related protein RAB 94.7 0.015 5E-07 53.5 3.0 22 487-508 24-45 (189)
363 3bos_A Putative DNA replicatio 94.7 0.013 4.4E-07 55.9 2.7 26 484-509 51-76 (242)
364 1moz_A ARL1, ADP-ribosylation 94.7 0.011 3.6E-07 53.9 1.9 24 484-507 17-40 (183)
365 2w58_A DNAI, primosome compone 94.7 0.017 5.7E-07 53.9 3.4 31 486-516 55-85 (202)
366 2bme_A RAB4A, RAS-related prot 94.7 0.014 4.8E-07 53.3 2.8 21 487-507 12-32 (186)
367 1vg8_A RAS-related protein RAB 94.7 0.015 5.2E-07 54.1 3.0 22 487-508 10-31 (207)
368 2cjw_A GTP-binding protein GEM 94.7 0.015 5.2E-07 53.9 3.0 21 487-507 8-28 (192)
369 2il1_A RAB12; G-protein, GDP, 94.7 0.016 5.6E-07 53.5 3.2 22 487-508 28-49 (192)
370 3reg_A RHO-like small GTPase; 94.6 0.024 8.2E-07 52.3 4.3 22 487-508 25-46 (194)
371 3iev_A GTP-binding protein ERA 94.6 0.016 5.5E-07 58.3 3.3 22 487-508 12-33 (308)
372 2bov_A RAla, RAS-related prote 94.6 0.015 5.3E-07 54.0 3.0 21 487-507 16-36 (206)
373 2qu8_A Putative nucleolar GTP- 94.6 0.017 5.7E-07 55.1 3.3 23 486-508 30-52 (228)
374 4dhe_A Probable GTP-binding pr 94.6 0.0092 3.2E-07 56.5 1.4 25 485-509 29-53 (223)
375 3n70_A Transport activator; si 94.6 0.02 6.7E-07 50.6 3.5 38 483-520 22-59 (145)
376 1zbd_A Rabphilin-3A; G protein 94.6 0.017 6E-07 53.6 3.3 22 487-508 10-31 (203)
377 1z06_A RAS-related protein RAB 94.6 0.016 5.5E-07 53.2 3.0 21 487-507 22-42 (189)
378 3lv8_A DTMP kinase, thymidylat 94.6 0.018 6.2E-07 55.5 3.4 27 484-510 26-52 (236)
379 3ld9_A DTMP kinase, thymidylat 94.6 0.018 6.3E-07 55.0 3.4 28 483-510 19-46 (223)
380 4tmk_A Protein (thymidylate ki 94.6 0.019 6.6E-07 54.5 3.5 27 484-510 2-28 (213)
381 3oes_A GTPase rhebl1; small GT 94.6 0.015 5.2E-07 54.1 2.8 24 485-508 24-47 (201)
382 1p5z_B DCK, deoxycytidine kina 94.6 0.012 4.2E-07 57.6 2.2 28 482-509 21-48 (263)
383 3llu_A RAS-related GTP-binding 94.6 0.018 6.2E-07 53.4 3.2 24 486-509 21-44 (196)
384 1nrj_B SR-beta, signal recogni 94.5 0.017 5.8E-07 54.5 3.0 24 486-509 13-36 (218)
385 1mh1_A RAC1; GTP-binding, GTPa 94.5 0.018 6.1E-07 52.4 3.0 21 487-507 7-27 (186)
386 3tqf_A HPR(Ser) kinase; transf 94.5 0.024 8.1E-07 51.6 3.7 27 481-507 12-38 (181)
387 3i8s_A Ferrous iron transport 94.5 0.018 6E-07 57.0 3.1 23 487-509 5-27 (274)
388 3tkl_A RAS-related protein RAB 94.5 0.023 7.7E-07 52.3 3.7 22 487-508 18-39 (196)
389 3dz8_A RAS-related protein RAB 94.5 0.017 5.7E-07 53.3 2.8 22 487-508 25-46 (191)
390 3bwd_D RAC-like GTP-binding pr 94.5 0.021 7.2E-07 51.8 3.4 24 484-507 7-30 (182)
391 3crm_A TRNA delta(2)-isopenten 94.5 0.017 5.9E-07 58.3 3.0 24 486-509 6-29 (323)
392 2a5j_A RAS-related protein RAB 94.4 0.018 6.3E-07 53.0 3.0 22 487-508 23-44 (191)
393 2o52_A RAS-related protein RAB 94.4 0.019 6.4E-07 53.5 3.1 22 487-508 27-48 (200)
394 2fv8_A H6, RHO-related GTP-bin 94.4 0.0099 3.4E-07 55.7 1.1 34 475-508 15-48 (207)
395 2ocp_A DGK, deoxyguanosine kin 94.4 0.019 6.5E-07 55.4 3.2 26 484-509 1-26 (241)
396 2h57_A ADP-ribosylation factor 94.4 0.016 5.6E-07 53.2 2.5 24 486-509 22-45 (190)
397 3foz_A TRNA delta(2)-isopenten 94.4 0.021 7.3E-07 57.1 3.4 25 485-509 10-34 (316)
398 1zj6_A ADP-ribosylation factor 94.4 0.02 6.9E-07 52.5 3.1 39 484-522 15-61 (187)
399 3b5x_A Lipid A export ATP-bind 94.4 7.2 0.00024 42.5 38.3 12 459-470 357-368 (582)
400 3def_A T7I23.11 protein; chlor 94.4 0.02 6.7E-07 56.1 3.1 23 487-509 38-60 (262)
401 3cnl_A YLQF, putative uncharac 94.3 0.022 7.5E-07 55.9 3.4 29 486-514 100-128 (262)
402 3a1s_A Iron(II) transport prot 94.3 0.022 7.4E-07 55.8 3.4 23 487-509 7-29 (258)
403 1h65_A Chloroplast outer envel 94.3 0.02 6.7E-07 56.4 3.1 23 487-509 41-63 (270)
404 3b60_A Lipid A export ATP-bind 94.3 7.3 0.00025 42.4 36.1 13 459-471 357-369 (582)
405 3l0o_A Transcription terminati 94.3 0.0085 2.9E-07 61.6 0.4 52 458-509 137-199 (427)
406 1fnn_A CDC6P, cell division co 94.3 0.019 6.6E-07 59.2 3.2 38 483-520 40-81 (389)
407 2h17_A ADP-ribosylation factor 94.3 0.018 6.1E-07 52.6 2.6 37 486-522 22-66 (181)
408 2atv_A RERG, RAS-like estrogen 94.3 0.021 7E-07 52.9 3.0 31 485-515 28-63 (196)
409 2p5s_A RAS and EF-hand domain 94.3 0.021 7.1E-07 53.1 3.0 25 484-508 27-51 (199)
410 3umf_A Adenylate kinase; rossm 94.3 0.02 6.8E-07 54.5 2.9 29 481-509 25-53 (217)
411 3cph_A RAS-related protein SEC 94.3 0.021 7E-07 53.5 3.0 23 485-507 20-42 (213)
412 1x3s_A RAS-related protein RAB 94.3 0.021 7.2E-07 52.4 3.0 23 486-508 16-38 (195)
413 2j1l_A RHO-related GTP-binding 94.3 0.022 7.5E-07 53.7 3.1 21 487-507 36-56 (214)
414 1jbk_A CLPB protein; beta barr 94.3 0.024 8.2E-07 51.6 3.3 28 483-510 41-68 (195)
415 1jwy_B Dynamin A GTPase domain 94.3 0.02 7E-07 57.5 3.1 23 487-509 26-48 (315)
416 1ltq_A Polynucleotide kinase; 94.3 0.021 7.1E-07 57.0 3.1 22 486-507 3-24 (301)
417 2f7s_A C25KG, RAS-related prot 94.3 0.024 8.2E-07 53.3 3.4 22 487-508 27-48 (217)
418 2q3h_A RAS homolog gene family 94.2 0.025 8.4E-07 52.5 3.3 37 485-521 20-66 (201)
419 2wsm_A Hydrogenase expression/ 94.2 0.021 7.1E-07 54.0 2.8 23 486-508 31-53 (221)
420 3c5c_A RAS-like protein 12; GD 94.2 0.023 7.9E-07 52.3 3.0 29 487-515 23-56 (187)
421 2e87_A Hypothetical protein PH 94.2 0.024 8.2E-07 58.3 3.5 25 485-509 167-191 (357)
422 2iwr_A Centaurin gamma 1; ANK 94.2 0.017 6E-07 52.2 2.1 22 486-507 8-29 (178)
423 2aka_B Dynamin-1; fusion prote 94.2 0.021 7.1E-07 56.8 2.9 24 486-509 27-50 (299)
424 2qby_A CDC6 homolog 1, cell di 94.1 0.014 4.9E-07 60.0 1.7 39 483-521 43-85 (386)
425 2g3y_A GTP-binding protein GEM 94.1 0.026 9.1E-07 53.4 3.4 23 486-508 38-60 (211)
426 2fu5_C RAS-related protein RAB 94.1 0.017 5.8E-07 52.6 1.9 22 487-508 10-31 (183)
427 3r7w_A Gtpase1, GTP-binding pr 94.1 0.025 8.5E-07 56.9 3.3 26 483-508 1-26 (307)
428 2gco_A H9, RHO-related GTP-bin 94.1 0.022 7.7E-07 53.0 2.8 21 487-507 27-47 (201)
429 2b6h_A ADP-ribosylation factor 94.1 0.024 8.2E-07 52.4 2.9 33 473-507 19-51 (192)
430 3b9p_A CG5977-PA, isoform A; A 94.0 0.027 9.2E-07 56.0 3.4 27 483-509 52-78 (297)
431 4dcu_A GTP-binding protein ENG 94.0 0.022 7.6E-07 60.7 2.9 23 486-508 24-46 (456)
432 2fh5_B SR-beta, signal recogni 94.0 0.033 1.1E-06 52.2 3.8 23 485-507 7-29 (214)
433 3q3j_B RHO-related GTP-binding 93.9 0.036 1.2E-06 52.3 3.9 30 486-515 28-62 (214)
434 4djt_A GTP-binding nuclear pro 93.9 0.015 5.3E-07 54.7 1.3 21 487-507 13-33 (218)
435 3eph_A TRNA isopentenyltransfe 93.8 0.028 9.6E-07 58.3 3.1 25 485-509 2-26 (409)
436 2atx_A Small GTP binding prote 93.8 0.027 9.4E-07 51.8 2.8 22 487-508 20-41 (194)
437 1l8q_A Chromosomal replication 93.7 0.021 7.3E-07 57.7 1.9 27 484-510 36-62 (324)
438 2x77_A ADP-ribosylation factor 93.7 0.023 7.9E-07 52.1 1.9 24 484-507 21-44 (189)
439 4gzl_A RAS-related C3 botulinu 93.6 0.026 8.8E-07 52.8 2.3 32 484-515 29-65 (204)
440 2hf9_A Probable hydrogenase ni 93.6 0.03 1E-06 53.0 2.8 23 486-508 39-61 (226)
441 1g8f_A Sulfate adenylyltransfe 93.6 0.033 1.1E-06 59.9 3.2 29 483-511 393-421 (511)
442 2hup_A RAS-related protein RAB 93.6 0.032 1.1E-06 51.9 2.8 21 487-507 31-51 (201)
443 2p65_A Hypothetical protein PF 93.5 0.029 1E-06 50.9 2.4 29 483-511 41-69 (187)
444 3h4m_A Proteasome-activating n 93.5 0.038 1.3E-06 54.5 3.3 28 482-509 48-75 (285)
445 1zcb_A G alpha I/13; GTP-bindi 93.5 0.039 1.3E-06 56.8 3.5 29 483-511 31-59 (362)
446 1puj_A YLQF, conserved hypothe 93.5 0.044 1.5E-06 54.3 3.7 27 485-511 120-146 (282)
447 3ec1_A YQEH GTPase; atnos1, at 93.4 0.035 1.2E-06 57.4 3.0 25 484-508 161-185 (369)
448 3cpj_B GTP-binding protein YPT 93.4 0.038 1.3E-06 52.4 3.0 22 487-508 15-36 (223)
449 3bh0_A DNAB-like replicative h 93.3 0.031 1.1E-06 56.4 2.5 36 472-507 55-90 (315)
450 2yc2_C IFT27, small RAB-relate 93.3 0.019 6.5E-07 53.4 0.8 23 486-508 21-43 (208)
451 2v3c_C SRP54, signal recogniti 93.3 0.013 4.6E-07 61.8 -0.4 38 485-522 99-136 (432)
452 2r62_A Cell division protease 93.3 0.016 5.5E-07 56.8 0.2 30 477-508 38-67 (268)
453 4hlc_A DTMP kinase, thymidylat 93.3 0.044 1.5E-06 51.6 3.3 26 485-510 2-27 (205)
454 1u94_A RECA protein, recombina 93.3 0.038 1.3E-06 56.8 3.0 50 471-521 47-100 (356)
455 2zts_A Putative uncharacterize 93.2 0.055 1.9E-06 51.9 4.0 24 482-505 27-50 (251)
456 3h2y_A GTPase family protein; 93.1 0.035 1.2E-06 57.3 2.5 26 483-508 158-183 (368)
457 2i1q_A DNA repair and recombin 93.1 0.047 1.6E-06 55.1 3.4 27 481-507 94-120 (322)
458 2qz4_A Paraplegin; AAA+, SPG7, 93.1 0.051 1.7E-06 52.7 3.4 27 483-509 37-63 (262)
459 2j0v_A RAC-like GTP-binding pr 93.0 0.044 1.5E-06 51.3 2.8 22 486-507 10-31 (212)
460 1lnz_A SPO0B-associated GTP-bi 92.9 0.056 1.9E-06 55.2 3.6 45 476-520 149-204 (342)
461 4a1f_A DNAB helicase, replicat 92.8 0.032 1.1E-06 56.8 1.6 59 473-534 34-92 (338)
462 3sr0_A Adenylate kinase; phosp 92.8 0.04 1.4E-06 51.9 2.2 23 487-509 2-24 (206)
463 1mky_A Probable GTP-binding pr 92.8 0.078 2.7E-06 56.1 4.7 36 487-522 3-50 (439)
464 3dm5_A SRP54, signal recogniti 92.8 0.049 1.7E-06 57.4 3.0 35 484-518 99-133 (443)
465 1m8p_A Sulfate adenylyltransfe 92.7 0.052 1.8E-06 59.4 3.2 38 483-521 394-434 (573)
466 2hjg_A GTP-binding protein ENG 92.6 0.051 1.7E-06 57.5 2.9 22 487-508 5-26 (436)
467 1x6v_B Bifunctional 3'-phospho 92.6 0.057 2E-06 59.4 3.3 39 484-523 51-91 (630)
468 1njg_A DNA polymerase III subu 92.6 0.067 2.3E-06 50.5 3.5 36 474-509 31-69 (250)
469 4dkx_A RAS-related protein RAB 92.5 0.067 2.3E-06 50.8 3.4 28 487-514 15-47 (216)
470 3gee_A MNME, tRNA modification 92.5 0.052 1.8E-06 58.1 2.8 42 485-526 233-286 (476)
471 3geh_A MNME, tRNA modification 92.5 0.037 1.3E-06 58.9 1.6 45 484-528 223-279 (462)
472 1sxj_D Activator 1 41 kDa subu 92.5 0.037 1.3E-06 56.3 1.6 38 472-509 43-82 (353)
473 2x2e_A Dynamin-1; nitration, h 92.5 0.045 1.6E-06 56.1 2.2 23 487-509 33-55 (353)
474 3gj0_A GTP-binding nuclear pro 92.4 0.037 1.3E-06 52.2 1.4 28 487-514 17-49 (221)
475 3fdi_A Uncharacterized protein 92.3 0.074 2.5E-06 49.8 3.3 25 485-509 6-30 (201)
476 1wxq_A GTP-binding protein; st 92.2 0.066 2.2E-06 55.9 3.1 23 487-509 2-24 (397)
477 2axn_A 6-phosphofructo-2-kinas 92.2 0.027 9.3E-07 61.0 0.2 26 484-509 34-59 (520)
478 3th5_A RAS-related C3 botulinu 91.4 0.026 8.8E-07 52.6 0.0 24 484-507 29-52 (204)
479 2xau_A PRE-mRNA-splicing facto 92.2 0.041 1.4E-06 62.6 1.6 33 481-513 105-137 (773)
480 3l0i_B RAS-related protein RAB 92.2 0.019 6.3E-07 53.4 -1.0 22 487-508 35-56 (199)
481 4i1u_A Dephospho-COA kinase; s 92.1 0.071 2.4E-06 50.3 2.9 21 487-507 11-31 (210)
482 3gmt_A Adenylate kinase; ssgci 92.1 0.081 2.8E-06 50.6 3.3 25 485-509 8-32 (230)
483 2ck3_D ATP synthase subunit be 92.0 0.094 3.2E-06 55.4 4.0 31 479-509 147-177 (482)
484 3syl_A Protein CBBX; photosynt 91.9 0.08 2.7E-06 52.8 3.3 26 484-509 66-91 (309)
485 2orw_A Thymidine kinase; TMTK, 91.9 0.071 2.4E-06 49.2 2.7 25 484-508 2-27 (184)
486 1xzp_A Probable tRNA modificat 91.8 0.028 9.7E-07 60.2 -0.3 38 485-522 243-292 (482)
487 3hws_A ATP-dependent CLP prote 91.8 0.069 2.4E-06 54.9 2.7 26 484-509 50-75 (363)
488 3uk6_A RUVB-like 2; hexameric 91.7 0.085 2.9E-06 54.0 3.2 41 482-522 67-107 (368)
489 2vhj_A Ntpase P4, P4; non- hyd 91.7 0.087 3E-06 53.0 3.1 28 480-507 118-145 (331)
490 1f5n_A Interferon-induced guan 91.7 0.075 2.6E-06 58.1 2.8 33 474-509 30-62 (592)
491 3p32_A Probable GTPase RV1496/ 91.6 0.073 2.5E-06 54.6 2.6 26 484-509 78-103 (355)
492 3co5_A Putative two-component 91.5 0.063 2.2E-06 47.2 1.7 28 483-510 25-52 (143)
493 1xwi_A SKD1 protein; VPS4B, AA 91.5 0.098 3.3E-06 52.9 3.4 28 482-509 42-69 (322)
494 2qpt_A EH domain-containing pr 91.4 0.082 2.8E-06 57.6 2.9 25 485-509 65-89 (550)
495 1tue_A Replication protein E1; 91.4 0.076 2.6E-06 49.8 2.2 29 481-509 54-82 (212)
496 2j69_A Bacterial dynamin-like 91.4 0.09 3.1E-06 59.0 3.3 28 482-509 66-93 (695)
497 2hjg_A GTP-binding protein ENG 91.3 0.099 3.4E-06 55.2 3.3 43 487-529 177-231 (436)
498 2chg_A Replication factor C sm 91.3 0.099 3.4E-06 48.7 3.0 22 487-508 40-61 (226)
499 2iut_A DNA translocase FTSK; n 91.2 0.15 5.1E-06 55.3 4.5 43 478-520 207-254 (574)
500 2gks_A Bifunctional SAT/APS ki 91.1 0.11 3.6E-06 56.7 3.3 27 483-509 370-396 (546)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-68 Score=643.64 Aligned_cols=406 Identities=23% Similarity=0.316 Sum_probs=355.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (599)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (599)
.++.+++.+++.++++++..++|.++|+|++++|++||+++++|++.+++++|.+.++..+...+..++..++.++. ..
T Consensus 150 ~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~-~~ 228 (1321)
T 4f4c_A 150 WAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFIT-GF 228 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45678888999999999999999999999999999999999999999999999998887765555555555544333 33
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHH
Q 007539 273 ILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRY 352 (599)
Q Consensus 273 il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~ 352 (599)
++++.++|.+++++++++++++++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..+++
T Consensus 229 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 308 (1321)
T 4f4c_A 229 IVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEA 308 (1321)
T ss_dssp HHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45566788888887777777777777777777777777777788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 353 EDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKS 432 (599)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 432 (599)
.+...+.....+.......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..++++.++++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 388 (1321)
T 4f4c_A 309 KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASG 388 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777666666666666666777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccCCCCC-CCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 433 MFQLLEEKADIQDRDNA-MPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 433 i~~~l~~~~~~~~~~~~-~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+.++++.+++.++.... .......++|+|+||+|+||+ ++++|+|+||+|+|||++|||||||||||||+++|+|+|
T Consensus 389 i~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp HHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred HHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 99999887654433221 222234568999999999974 568999999999999999999999999999999999999
Q ss_pred CCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCcccccc
Q 007539 510 DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589 (599)
Q Consensus 510 ~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~v 589 (599)
+|++|+|++||+|+++++.++||++|+||+|||+||+|||||||+||+|++++|++++||+.|++||||++||+||||+|
T Consensus 469 ~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~v 548 (1321)
T 4f4c_A 469 DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLV 548 (1321)
T ss_dssp CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEE
T ss_pred ccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCC
Q 007539 590 GERGLKIEGK 599 (599)
Q Consensus 590 gE~G~~LSG~ 599 (599)
||+|.+||||
T Consensus 549 Ge~G~~LSGG 558 (1321)
T 4f4c_A 549 GDRGTQLSGG 558 (1321)
T ss_dssp SSSSCCCCHH
T ss_pred cCCCCCCCHH
Confidence 9999999997
No 2
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.7e-66 Score=572.53 Aligned_cols=479 Identities=27% Similarity=0.383 Sum_probs=388.2
Q ss_pred HHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHH
Q 007539 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (599)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 187 (599)
++++++|++ ++++.++.++++.++..++.++.|++++.++|.+........ . ..+.......+..++++.+
T Consensus 2 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~ 72 (578)
T 4a82_A 2 IKRYLQFVK-----PYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTT-D---EKVHHLTIAIGIALFIFVI 72 (578)
T ss_dssp HHHHHHHHG-----GGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCH-H---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-h---HHHHHHHHHHHHHHHHHHH
Confidence 456777776 557777777777777888899999999999998754221000 0 0010000011111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007539 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (599)
Q Consensus 188 ~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (599)
+..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+..++..++.+
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 149 (578)
T 4a82_A 73 ---VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITI 149 (578)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456778888999999999999999999999999999999999999999999998888776554344444444433
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHH
Q 007539 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (599)
Q Consensus 268 ~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~ 347 (599)
++ ..++++.++|.++++.++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|++
T Consensus 150 i~-~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 228 (578)
T 4a82_A 150 II-ALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228 (578)
T ss_dssp HH-HHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHH
Confidence 22 22344556777777766666666555555666666666666677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (599)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 427 (599)
..+++.+...+..+..........++..+..+.++++|++++..|.+|+|+++++..++..+..|+..+...+..++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 308 (578)
T 4a82_A 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSF 308 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777766666666656666677788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 428 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
.+++|+.++++.+++..+.....+.+...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 309 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 309 ASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp HHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 9999999999877654332222222334568999999999985 468999999999999999999999999999999999
Q ss_pred cCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccc
Q 007539 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (599)
Q Consensus 507 gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~d 586 (599)
|+|+|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+|+|+.++++++++++.++++|+++++|+|||
T Consensus 389 g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~ 468 (578)
T 4a82_A 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468 (578)
T ss_dssp TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccCCCC
Q 007539 587 TVVGERGLKIEGK 599 (599)
Q Consensus 587 T~vgE~G~~LSG~ 599 (599)
|.+||+|.+||||
T Consensus 469 t~~~~~g~~LSgG 481 (578)
T 4a82_A 469 TEVGERGVKLSGG 481 (578)
T ss_dssp CBCCGGGTTSCHH
T ss_pred hhhccCCCcCCHH
Confidence 9999999999997
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-65 Score=568.90 Aligned_cols=470 Identities=23% Similarity=0.347 Sum_probs=382.9
Q ss_pred HHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHH
Q 007539 110 TLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIAR 189 (599)
Q Consensus 110 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~ 189 (599)
.+++|++ ++++.+++++++.++..++.++.|++++.++|.+..... .. .+.... ..+++..
T Consensus 13 ~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~------~~~~~~----~~~~~~~--- 73 (587)
T 3qf4_A 13 TLARYLK-----PYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-FS------LVLKTG----ILMLIVA--- 73 (587)
T ss_dssp CGGGGTG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-HH------HHHHHH----HHHHHHH---
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HH------HHHHHH----HHHHHHH---
Confidence 4555665 457777777888888888999999999999998753211 11 011110 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 190 TTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISM 269 (599)
Q Consensus 190 ~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (599)
++..++.+++.++..+.+.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.++..+...+..++..++.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~ 153 (587)
T 3qf4_A 74 LIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVG 153 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234566777888899999999999999999999999999999999999999999998887766655555544433322
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHH
Q 007539 270 VSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFL 349 (599)
Q Consensus 270 ~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~ 349 (599)
..++++.++|.+++++++.+++++++...+.+...+..++.++..++..+.+.|.++|+++||+|++|+++.++|.+..
T Consensus 154 -~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~ 232 (587)
T 3qf4_A 154 -GIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKAN 232 (587)
T ss_dssp -HHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 2234455677777766666666665655566666666666677778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 350 RRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVD 429 (599)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~ 429 (599)
+++.+...+..+..........++.....+.++++|++++..|.+++|.++++..++..+..|+..++..+..++++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 312 (587)
T 3qf4_A 233 ESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASAS 312 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777766665555555555566667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 430 MKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 430 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
++|+.++++.+++..+.....+.+...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 313 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 313 AKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp HHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred HHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999999876654332222222234468999999999974 56899999999999999999999999999999999999
Q ss_pred CCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccc
Q 007539 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (599)
Q Consensus 509 y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~ 588 (599)
|+|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+++++.++++++++++.++++|+++++|+||||.
T Consensus 393 ~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~ 472 (587)
T 3qf4_A 393 IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSR 472 (587)
T ss_dssp SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCE
T ss_pred ccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCC
Q 007539 589 VGERGLKIEGK 599 (599)
Q Consensus 589 vgE~G~~LSG~ 599 (599)
+||+|.+||||
T Consensus 473 ~~~~~~~LSgG 483 (587)
T 3qf4_A 473 VERGGRNFSGG 483 (587)
T ss_dssp ECSSSCSSCHH
T ss_pred hcCCCCCcCHH
Confidence 99999999997
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-65 Score=572.98 Aligned_cols=474 Identities=24% Similarity=0.364 Sum_probs=390.4
Q ss_pred HHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHH
Q 007539 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (599)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (599)
+..++++++|++ ++++.++.++++.++..++.++.|++++.++|.+..... .. .+.... .++++
T Consensus 22 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~------~~~~~~----~~~~~ 85 (598)
T 3qf4_B 22 TATLRRLLGYLR-----PHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR-FD------LLPRYM----LILGT 85 (598)
T ss_dssp HHHHHHHGGGTG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-GG------GHHHHH----HHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HH------HHHHHH----HHHHH
Confidence 455677777776 457777777888888889999999999999998753211 11 111111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007539 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (599)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (599)
.. ++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+..++..+
T Consensus 86 ~~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 162 (598)
T 3qf4_B 86 IY---ALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGI 162 (598)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 123456777888889999999999999999999999999999999999999999999888887665555555555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHH
Q 007539 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (599)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (599)
+.++.. .++++.++|.+++++++++++++++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 163 ~~~i~~-~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 241 (598)
T 3qf4_B 163 VTLAGA-VIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEK 241 (598)
T ss_dssp HHHHHH-HHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHH
Confidence 443332 3344556777777666666665555555666666666666677778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~ 424 (599)
|++..+++.+...+..+..........++..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~ 321 (598)
T 3qf4_B 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQ 321 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888877777666666666666666777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHH
Q 007539 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (599)
Q Consensus 425 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~L 504 (599)
++..+++|+.++++.+++.+.. ...+.+...+.|+++||+|+|++++++|+|+||+|++||++|||||||||||||+++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDDP-DAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCS-SCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHH
Confidence 9999999999999876653321 112223344689999999999877789999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCc
Q 007539 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (599)
Q Consensus 505 L~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G 584 (599)
|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+|+++.++++++++++.++++++++++|+|
T Consensus 401 l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 480 (598)
T 3qf4_B 401 LMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEG 480 (598)
T ss_dssp HTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTG
T ss_pred HhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred cccccccCcccCCCC
Q 007539 585 YSTVVGERGLKIEGK 599 (599)
Q Consensus 585 ~dT~vgE~G~~LSG~ 599 (599)
|||.+||+|.+||||
T Consensus 481 ~~t~~~~~g~~LSgG 495 (598)
T 3qf4_B 481 YETVLTDNGEDLSQG 495 (598)
T ss_dssp GGCBCHHHHTTSCHH
T ss_pred ccchhcCCCCCCCHH
Confidence 999999999999997
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1e-63 Score=557.00 Aligned_cols=473 Identities=25% Similarity=0.339 Sum_probs=385.1
Q ss_pred HHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHH
Q 007539 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (599)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (599)
++.++.++++++ ++++.++..+++.++..++.++.|++++.++|.+.... .. .....+ +..+++
T Consensus 10 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~------~~~~~~----~~~~~~ 73 (582)
T 3b5x_A 10 WQTFKRLWTYIR-----LYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-ES------NFLRIL----PFMILG 73 (582)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch------HHHHHH----HHHHHH
Confidence 455667777775 44566666677777788888999999999999875211 10 001100 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007539 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (599)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (599)
..+ +..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+..++..+
T Consensus 74 ~~~---~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b5x_A 74 LMF---VRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREG 150 (582)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23456777888889999999999999999999999999999999999999999999888877665555555555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHH
Q 007539 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (599)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (599)
+.+++.+ ++++.++|.+++++++++++++++...+.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 151 ~~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b5x_A 151 ASIIGLL-TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR 229 (582)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHH
Confidence 4443333 334446777777666665555555555555555666666677778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~ 424 (599)
|.+..+++.+...+..+...+......++..+...+++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b5x_A 230 FDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777777666666666666677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 425 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
++..+++|+.++++.+++.++. ..+.+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999876543221 11122224579999999999753 68999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCC-CCCCHHHHHHHHHHcCchHHHhcCc
Q 007539 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~-~~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++. ++.++++++++++.++++++++++|
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 467 (582)
T 3b5x_A 388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467 (582)
T ss_pred HHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999997 7789999999999999999999999
Q ss_pred CccccccccCcccCCCC
Q 007539 583 AKYSTVVGERGLKIEGK 599 (599)
Q Consensus 583 ~G~dT~vgE~G~~LSG~ 599 (599)
+||||.+||+|.+||||
T Consensus 468 ~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 468 QGLDTVIGENGTSLSGG 484 (582)
T ss_pred ccccchhcCCCCcCCHH
Confidence 99999999999999997
No 6
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=8.9e-64 Score=557.54 Aligned_cols=473 Identities=25% Similarity=0.337 Sum_probs=385.6
Q ss_pred HHHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHH
Q 007539 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (599)
Q Consensus 105 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (599)
++.++.++++++ ++++.++..+++.++..++.++.|++++.++|.+.... .. .....+ +..+++
T Consensus 10 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~-------~~~~~~---~~~~~~ 73 (582)
T 3b60_A 10 WQTFRRLWPTIA-----PFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DR-------SVLLWM---PLVVIG 73 (582)
T ss_dssp CHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-TH-------HHHHHS---HHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch-------HHHHHH---HHHHHH
Confidence 345667777776 44666666777777788888999999999999764211 10 000000 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007539 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (599)
Q Consensus 185 ~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (599)
..+ +..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+..++..+
T Consensus 74 ~~~---~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b60_A 74 LMI---LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23456777888889999999999999999999999999999999999999999999888877665555665555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHH
Q 007539 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (599)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~ 344 (599)
+.+++.+ ++++.++|.+++++++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 151 ~~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b60_A 151 ASIIGLF-IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229 (582)
T ss_dssp HHHHHHH-HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHH
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHH
Confidence 5443333 334456777777766666655555555556556666666677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (599)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~ 424 (599)
|.+..+++.+...+..+...+......++..+....++++|++.+..|.+|+|+++++..++..+..|+..+...+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b60_A 230 FDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777777666666666666677788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCC-CcccccceeEeeCCCEEEEEcCCCCcHHHHHH
Q 007539 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (599)
Q Consensus 425 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~ 503 (599)
++..+++|+.++++.+++.++. ..+.+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999876543221 11222234579999999999754 78999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCC-CCCCHHHHHHHHHHcCchHHHhcCc
Q 007539 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~-~~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++. ++.++++++++++.++++++++++|
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p 467 (582)
T 3b60_A 388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_dssp HHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHST
T ss_pred HHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999997 7789999999999999999999999
Q ss_pred CccccccccCcccCCCC
Q 007539 583 AKYSTVVGERGLKIEGK 599 (599)
Q Consensus 583 ~G~dT~vgE~G~~LSG~ 599 (599)
+||||.+||+|.+||||
T Consensus 468 ~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 468 NGLDTIIGENGVLLSGG 484 (582)
T ss_dssp TGGGSBCCTTSCSSCHH
T ss_pred ccccccccCCCCCCCHH
Confidence 99999999999999997
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.3e-63 Score=555.67 Aligned_cols=477 Identities=25% Similarity=0.331 Sum_probs=380.3
Q ss_pred HHHHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHH
Q 007539 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (599)
Q Consensus 106 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (599)
+.++.++++++ ++++.++..+++.++..++.++.|++++.++|.+........ . ..+..+. ..+++.
T Consensus 5 ~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~--~--~~~~~~~----~~~~~~ 71 (595)
T 2yl4_A 5 PEARKLLGLAY-----PERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDY--S--DNLTRLC----LGLSAV 71 (595)
T ss_dssp HHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCC--H--HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh--h--HHHHHHH----HHHHHH
Confidence 44566777765 456666777777777888888999999999997643211000 0 0011110 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007539 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (599)
Q Consensus 186 ~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (599)
. ++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+..++..++
T Consensus 72 ~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~ 148 (595)
T 2yl4_A 72 F---LCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGA 148 (595)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1223556777888889999999999999999999999999999999999999999988887665554555555444
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHH
Q 007539 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (599)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~ 345 (599)
.+++.+ ++++.++|.+++++++.+++++++...+.+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|
T Consensus 149 ~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 227 (595)
T 2yl4_A 149 QASVGI-SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 227 (595)
T ss_dssp HHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHH
Confidence 433322 3344567777776666666555555555555566666666777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (599)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 425 (599)
.+..+++.+...+..+...+......++.....+.++++|++++.+|.+|+|+++++..+...+..|+..+...+..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 307 (595)
T 2yl4_A 228 ASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMK 307 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887777666665555555555566677888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCce-EEEEEEEEeecCC--CcccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGS-IQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 426 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~-I~f~nVsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
+..+++|+.++++.+++.++.....+.+...+. |+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+
T Consensus 308 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl 387 (595)
T 2yl4_A 308 GLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 387 (595)
T ss_dssp HHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHH
T ss_pred HHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999876543221111111122457 9999999999753 4799999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCC---CCHHHHHHHHHHcCchHHHh
Q 007539 503 RLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIM 579 (599)
Q Consensus 503 ~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~---~sdeei~~A~~~a~l~d~I~ 579 (599)
++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++.+. .++++++++++.++++++++
T Consensus 388 ~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (595)
T 2yl4_A 388 SLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 467 (595)
T ss_dssp HHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 78999999999999999999
Q ss_pred cCcCccccccccCcccCCCC
Q 007539 580 NFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 580 ~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++|+|+||.+||+|.+||||
T Consensus 468 ~l~~g~~~~~~~~~~~LSgG 487 (595)
T 2yl4_A 468 NFPQGFNTVVGEKGVLLSGG 487 (595)
T ss_dssp TSSSGGGCBCSSSSCCCCHH
T ss_pred hCcccccccccCCCCcCCHH
Confidence 99999999999999999997
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.1e-64 Score=606.44 Aligned_cols=406 Identities=25% Similarity=0.285 Sum_probs=322.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--cChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (599)
Q Consensus 193 ~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~--~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (599)
.++.+++.+++...+.++..++|.++|++++++|++||+. +++|++.+|+++|.+.++..+...+..++..++.++..
T Consensus 808 ~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ 887 (1321)
T 4f4c_A 808 GICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAG 887 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3566778888999999999999999999999999999986 67999999999999888877655555555555444332
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHH
Q 007539 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLR 350 (599)
Q Consensus 271 ~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~ 350 (599)
+ ++++.++|.++++++++++++++......+...+...+..+..++......|+++|+++||+|+.|+++.++|.+..+
T Consensus 888 ~-~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 966 (1321)
T 4f4c_A 888 I-GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLD 966 (1321)
T ss_dssp H-HHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHH
T ss_pred e-eeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHH
Confidence 2 334445666666555544443333322222111112222334455667788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 351 RYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLV--MVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (599)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~--~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 428 (599)
...+...+......+.......+..+..+.++++|++++..|..+++.+. .+..++.....|+..+...+.+++++..
T Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1046 (1321)
T 4f4c_A 967 IPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATF 1046 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777666655544444444445555666778888888776665443 3333344445677778888899999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 429 DMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 429 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
+++|+.++++.+++.++.....+.++..|+|+|+||+|+||+ +.|||+||||+|+|||+||||||||||||||+++|+
T Consensus 1047 a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1047 AGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp HHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred HHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 999999999887765443333344455679999999999974 447999999999999999999999999999999999
Q ss_pred cCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCC--CCCCHHHHHHHHHHcCchHHHhcCcCc
Q 007539 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAK 584 (599)
Q Consensus 507 gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~--~~~sdeei~~A~~~a~l~d~I~~Lp~G 584 (599)
|+|+|++|+|+|||+|++++++++||++|+||||||+||+|||||||+||. ++++|||+++||+.|+++|||++||+|
T Consensus 1127 rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~G 1206 (1321)
T 4f4c_A 1127 RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206 (1321)
T ss_dssp TSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTT
T ss_pred cCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCC
Confidence 999999999999999999999999999999999999999999999999994 578999999999999999999999999
Q ss_pred cccccccCcccCCCC
Q 007539 585 YSTVVGERGLKIEGK 599 (599)
Q Consensus 585 ~dT~vgE~G~~LSG~ 599 (599)
|||+|||+|.+||||
T Consensus 1207 ldT~vge~G~~LSgG 1221 (1321)
T 4f4c_A 1207 FETRVGDRGTQLSGG 1221 (1321)
T ss_dssp TCSEETTTSCSSCHH
T ss_pred CCCEecCCCcccCHH
Confidence 999999999999997
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.3e-62 Score=583.66 Aligned_cols=484 Identities=23% Similarity=0.300 Sum_probs=382.6
Q ss_pred HHHHHHHhhcccChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhh------hhh---hhhHHHHHHhHH
Q 007539 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTAT------ALA---ANSTFLALFGTP 178 (599)
Q Consensus 108 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~------~~~---~~~~~~~l~~~~ 178 (599)
+..+++|.. +..+..+++++++.++..+...+.|++++.++|.+........ ... .......-+...
T Consensus 35 ~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 35 VLTMFRYAG----WLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp THHHHTCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 455555553 3445555666666666667777788889999987642110000 000 000000000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccChhhHHHHHhhhHHHHHHHHHHHHH
Q 007539 179 AAVLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVF 258 (599)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~lr~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~ 258 (599)
..++++++ ++..++.+++.+++.+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+.
T Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 111 AYYYTGIG---AGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 123456778888999999999999999999999999999999999999999999999998888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhh
Q 007539 259 NVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE 338 (599)
Q Consensus 259 ~~~~~~~~~~~~~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e 338 (599)
.++..++.++. ..++++.++|.+++++++++++++++...+.+..++..++.++..++..+.+.|.++|+++||+|+.|
T Consensus 188 ~~~~~~~~~i~-~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e 266 (1284)
T 3g5u_A 188 MFFQAMATFFG-GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQ 266 (1284)
T ss_dssp HHHHHHHHHHH-HHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcch
Confidence 66655544333 23445566787777777777766666666666666666666677778888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 339 AFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGS 418 (599)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~ 418 (599)
+.+.++|++..+++.+...+.............++.....++++++|++++..|.+++|+++++..++.....|+..+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 346 (1284)
T 3g5u_A 267 KKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP 346 (1284)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888877776666665555555666667777889999999999999999888787888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCC-CCCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCC
Q 007539 419 VYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSG 495 (599)
Q Consensus 419 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SG 495 (599)
.+..++++.++++|+.++++.+++.++.. .....+...+.|+|+||+|+|++ +.++|+|+||+|++||++|||||||
T Consensus 347 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG 426 (1284)
T 3g5u_A 347 NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCC
Confidence 99999999999999999998776543211 11112223578999999999974 3579999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCch
Q 007539 496 SGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (599)
Q Consensus 496 SGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~ 575 (599)
||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||+||++||+|||.+|+++++++++++|++.++++
T Consensus 427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~ 506 (1284)
T 3g5u_A 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506 (1284)
T ss_dssp SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCccccccccCcccCCCC
Q 007539 576 DTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 576 d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
++|+++|+||||.+||+|.+||||
T Consensus 507 ~~i~~l~~g~~t~~~~~g~~LSgG 530 (1284)
T 3g5u_A 507 DFIMKLPHQFDTLVGERGAQLSGG 530 (1284)
T ss_dssp HHHHHSTTGGGCCCSSSSCSSCHH
T ss_pred HHHHhccccccccccCCCCccCHH
Confidence 999999999999999999999997
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.8e-56 Score=530.07 Aligned_cols=463 Identities=22% Similarity=0.315 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcccchhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 126 RVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSK 205 (599)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~p~l~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~lr~~~~~~ 205 (599)
.+++++++.++...+....|+++..++|.+........ ......... .++++.++ +..++..++.+++.+
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~------~~~~~l~i---~~~~~~~~~~~~~~~ 775 (1284)
T 3g5u_A 706 YFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPET-QRQNSNLFS------LLFLILGI---ISFITFFLQGFTFGK 775 (1284)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH-HHHHHHHHH------HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh-hHHHHHHHH------HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34445555555556666778888888886643211111 000011111 11111111 223455677888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccc--ccChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007539 206 VALRTIRSVSRKVFSHLHELDLRYHL--SRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (599)
Q Consensus 206 ~~~~~~~~lr~~lf~~ll~l~~~~f~--~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (599)
.+.++..++|.++|++++++|+.||+ ++++|++.+++++|.+.++..+...+..++..++.++. .+++++.++|.++
T Consensus 776 ~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~-~~i~~~~~~~~l~ 854 (1284)
T 3g5u_A 776 AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT-GIIISLIYGWQLT 854 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHH
Confidence 99999999999999999999999999 47899999999999998888776666555555544332 3344555677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007539 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (599)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (599)
+++++++++++++.....+...+...+..+..++......|.+.|+++||+|+.|+.+.++|.+..+...+...+.....
T Consensus 855 lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1284)
T 3g5u_A 855 LLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVF 934 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666555554444444444444444555566778899999999999999999999999999988888777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 007539 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (599)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 443 (599)
+........+..+..+.++++|++++..|.+++|.++++..++.....|+..+...+..++++..+++|+.++++.+++.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1014 (1284)
T 3g5u_A 935 GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI 1014 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 66555555555566667778889999999999999999988888888888888888888889999999999999876654
Q ss_pred cCCCC-CCCCCCCCceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 444 QDRDN-AMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 444 ~~~~~-~~~~~~~~~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
..... ..+.+...+.|+|+||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 1015 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1015 DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDG 1094 (1284)
T ss_dssp SSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSS
T ss_pred cccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 32111 1122233568999999999974 34799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCC--CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCC
Q 007539 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEG 598 (599)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG 598 (599)
+|+++++.+++|++|+||||||.+|++||+|||.++++ ..++++++++++.++++++++++|+||||.|||+|.+|||
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred EEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 99999999999999999999999999999999999975 4789999999999999999999999999999999999999
Q ss_pred C
Q 007539 599 K 599 (599)
Q Consensus 599 ~ 599 (599)
|
T Consensus 1175 G 1175 (1284)
T 3g5u_A 1175 G 1175 (1284)
T ss_dssp H
T ss_pred H
Confidence 7
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.4e-41 Score=345.87 Aligned_cols=181 Identities=57% Similarity=0.901 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcH
Q 007539 419 VYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGK 498 (599)
Q Consensus 419 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGK 498 (599)
.+..++++.++++|++++++.+++..+.....+.+...+.|+|+||+|+|++++++|+||||+|++||++||||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGK 93 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGK 93 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchH
Confidence 34567788899999999998766543322222223334689999999999877789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHH
Q 007539 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578 (599)
Q Consensus 499 STL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I 578 (599)
|||+++|+|+|+|++|+|++||+|+.+++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.+++++++
T Consensus 94 STLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i 173 (306)
T 3nh6_A 94 STILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI 173 (306)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hcCcCccccccccCcccCCCC
Q 007539 579 MNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 579 ~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
..+|+||||.+||+|.+||||
T Consensus 174 ~~lp~gl~t~~~~~g~~LSGG 194 (306)
T 3nh6_A 174 MAFPEGYRTQVGERGLKLSGG 194 (306)
T ss_dssp HHSTTGGGCEESTTSBCCCHH
T ss_pred HhccchhhhHhcCCcCCCCHH
Confidence 999999999999999999997
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-32 Score=272.75 Aligned_cols=143 Identities=38% Similarity=0.608 Sum_probs=136.0
Q ss_pred ceEEEEEEEEeec-CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 457 GSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
.+|+++||+|+|+ +++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|+.|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4799999999995 356899999999999999999999999999999999999999999999999999999988999999
Q ss_pred eeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||||++.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|+++.+++++.+||||
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 149 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 149 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence 9999999999999999999987667788999999999999999999999999999999999997
No 13
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=2.1e-32 Score=270.98 Aligned_cols=141 Identities=38% Similarity=0.603 Sum_probs=133.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+|+|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++|+||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 78999999996456899999999999999999999999999999999999999999999999999988888889999999
Q ss_pred CCCCCCchhhHHHHhhcC-CCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 539 PQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g-~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||++.+|++|++|||.++ .+..+++++.++++.++++++++++|+|++|.+++.+.+||||
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 143 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHH
Confidence 999999999999999998 5567788999999999999999999999999999999999997
No 14
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=3.8e-31 Score=264.34 Aligned_cols=142 Identities=45% Similarity=0.825 Sum_probs=133.3
Q ss_pred ceEEEEEEEEeecCC--CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhh
Q 007539 457 GSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~ 534 (599)
+.|+++||+|+|++. +++|+|+||+|++|+++||+||||||||||+++|+|+++| +|+|.+||+++.+++...+|+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 369999999999753 4799999999999999999999999999999999999987 8999999999998888889999
Q ss_pred ceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+||||++.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|+||.+++++.+||||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgG 159 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGG 159 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHH
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHH
Confidence 99999999999999999999987656788899999999999999999999999999999999997
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=1e-30 Score=262.67 Aligned_cols=143 Identities=34% Similarity=0.608 Sum_probs=133.1
Q ss_pred ceEEEEEEEEeecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhh
Q 007539 457 GSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~ 534 (599)
+.|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974 2679999999999999999999999999999999999999999999999999998888889999
Q ss_pred ceeeCCCCCCchhhHHHHhhcCCCCCCH-HHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 535 IGVVPQDTVLFNDTIFHNIRYGRLSATE-EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 535 i~~V~Qd~~LF~gTIreNI~~g~~~~sd-eei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+||||++.+|+.|++|||.++.+..++ +++.++++.++++++++.+|+|+++.+++.+.+||||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 160 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHH
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHH
Confidence 9999999999999999999998655554 7788889999999999999999999999999999997
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.96 E-value=4.9e-30 Score=268.95 Aligned_cols=144 Identities=30% Similarity=0.567 Sum_probs=135.0
Q ss_pred CCCceEEEEEEEEeec-CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHh
Q 007539 454 LKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 454 ~~~~~I~f~nVsF~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR 532 (599)
+..+.|+++||+|+|+ ++.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++.+.+|
T Consensus 15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 3446899999999997 35689999999999999999999999999999999999998 999999999999999999999
Q ss_pred hhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 533 KSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 533 ~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+.|+||+|++.+|+.|++|||.+.. ...+++++++++.+++++++.++|.+|+|.++++|.+||||
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 9999999999999999999998654 36789999999999999999999999999999999999997
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=5.2e-28 Score=237.19 Aligned_cols=129 Identities=23% Similarity=0.450 Sum_probs=118.8
Q ss_pred ceEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
+.|+++||+|+|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+|| .|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999973 56899999999999999999999999999999999999999999999998 49
Q ss_pred eeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||||++.+|++|++|||.++.+ ..+.+..++++.+++.+++..+|.+++|.+++++.+||||
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG 134 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 134 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHH
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHH
Confidence 99999999999999999999853 3455667788888999999999999999999999999997
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=1.1e-27 Score=236.14 Aligned_cols=128 Identities=31% Similarity=0.556 Sum_probs=117.3
Q ss_pred eEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
.|+++||+|+|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+|| .|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 4899999999964 46899999999999999999999999999999999999999999999999 499
Q ss_pred eeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||||++.+|+.|++|||.++.+ .++++..++++.+++.+.+..+|.|++|.+++++.+||||
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG 131 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGG 131 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHH
T ss_pred EEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHH
Confidence 9999999999999999999863 3445667788888998999999999999999999999997
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2.8e-26 Score=226.48 Aligned_cols=135 Identities=24% Similarity=0.456 Sum_probs=109.4
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (599)
-|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+...+ |+.|+
T Consensus 6 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 5899999999964 679999999999999999999999999999999999999999999999999998887665 44599
Q ss_pred eeCCCCCCchh-hHHHHhhcCC-CCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~-~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||||++.+|.+ |++||+.++. +..+.++..+.++ +.++.++ |++........+||||
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgG 143 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGG 143 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHH
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHH
Confidence 99999999987 9999999864 2222233333332 3344444 4555566677889986
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=2.5e-26 Score=230.54 Aligned_cols=131 Identities=25% Similarity=0.446 Sum_probs=108.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~~~~~~lR~~i 535 (599)
-|+++||+|+|++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. +.+...+|+.|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 5999999999976667999999999999999999999999999999999999999999999999994 33456788999
Q ss_pred eeeCCCC--CCchhhHHHHhhcCC--CCCCH----HHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDT--VLFNDTIFHNIRYGR--LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~--~LF~gTIreNI~~g~--~~~sd----eei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||+|+| .+|..|++|||.++. ...+. +++.++++..++.++..+ ...+||||
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG 147 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----------PTHCLSFG 147 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHH
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------CcccCCHH
Confidence 9999997 588999999998763 12333 446677777777654333 34568876
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=4.1e-26 Score=224.51 Aligned_cols=131 Identities=24% Similarity=0.340 Sum_probs=106.5
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH----
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL---- 531 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l---- 531 (599)
|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 7899999999743 369999999999999999999999999999999999999999999999999999997764
Q ss_pred hhhceeeCCCCCCchh-hHHHHhhcCC-----CCCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 532 RKSIGVVPQDTVLFND-TIFHNIRYGR-----LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~g-TIreNI~~g~-----~~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+.|+||+|++.+|.. |++||+.++. ...+ .+++.++++..++.+.. ......+||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG 149 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGG 149 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHH
Confidence 4579999999999987 9999997741 1222 24456667776665432 12345668876
No 22
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=5.7e-26 Score=234.87 Aligned_cols=126 Identities=27% Similarity=0.440 Sum_probs=106.9
Q ss_pred ceEEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH--
Q 007539 457 GSIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-- 531 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-- 531 (599)
.-|+++||+++|+.+ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+..++.+++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 369999999999742 369999999999999999999999999999999999999999999999999999987654
Q ss_pred -hhhceeeCCCCCCchh-hHHHHhhcCC--CCCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 532 -RKSIGVVPQDTVLFND-TIFHNIRYGR--LSAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 532 -R~~i~~V~Qd~~LF~g-TIreNI~~g~--~~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+.||||+|++.+|.. |++|||.++. ...+ ++++.++++.+++.+...+.|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~ 161 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 161 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh
Confidence 7889999999999876 9999998752 1122 345777888888877655544
No 23
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=6.6e-26 Score=229.23 Aligned_cols=125 Identities=26% Similarity=0.493 Sum_probs=100.8
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
+.|+++||+|.| +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+|| +|+
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~ 102 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RIS 102 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEE
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEE
Confidence 469999999964 5799999999999999999999999999999999999999999999998 499
Q ss_pred eeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||||++.+|++|++|||. +. ...+..+.++++.+++.+++..+|++++|.+++++.+||||
T Consensus 103 ~v~Q~~~l~~~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgG 163 (290)
T 2bbs_A 103 FCSQNSWIMPGTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163 (290)
T ss_dssp EECSSCCCCSSBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHH
T ss_pred EEeCCCccCcccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHH
Confidence 999999999999999998 54 23455667788888999999999999999999999999997
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=2.2e-25 Score=223.12 Aligned_cols=120 Identities=24% Similarity=0.401 Sum_probs=107.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+.+.+++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 699999999995 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC-chhhHHHHhhcCCC----CCCHHHHHHHHHHcCchHHH
Q 007539 538 VPQDTVL-FNDTIFHNIRYGRL----SATEEEVYDAARRAAIHDTI 578 (599)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~----~~sdeei~~A~~~a~l~d~I 578 (599)
|+|++.+ |+.|++||+.++.. ...++++.++++..++.+..
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 135 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA 135 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh
Confidence 9999987 67899999988742 22356788888888876543
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=1.7e-25 Score=223.16 Aligned_cols=130 Identities=28% Similarity=0.417 Sum_probs=108.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~~~~~~lR~~i 535 (599)
-|+++||+|+|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. ..+...+|+.|
T Consensus 24 ~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 499999999995 457999999999999999999999999999999999999999999999999985 34556788899
Q ss_pred eeeCCCCCCchh-hHHHHhhcCC---CCCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVLFND-TIFHNIRYGR---LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~---~~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||+|++.+|.. |++|||.++. ...+ ++++.++++..++.++..+ ...+||||
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG 163 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGG 163 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHH
Confidence 999999999987 9999998742 1122 3456778888877665433 23567875
No 26
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=1.6e-25 Score=218.68 Aligned_cols=130 Identities=25% Similarity=0.335 Sum_probs=106.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH---Hh-h
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR-K 533 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~---lR-~ 533 (599)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... +| +
T Consensus 4 ~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 4899999999963 67999999999999999999999999999999999999999999999999998887653 34 7
Q ss_pred hceeeCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 534 SIGVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 534 ~i~~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+|+||+|++.+|.. |++||+.++.. ..+ ++++.++++..++.++..+. ..+||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG 144 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK-----------PYELSGG 144 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-----------GGGSCHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHH
Confidence 89999999999864 99999987521 111 34567777777776543332 3568875
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.92 E-value=3e-25 Score=222.45 Aligned_cols=121 Identities=25% Similarity=0.420 Sum_probs=105.5
Q ss_pred EEEEEEEEeec-CC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhh
Q 007539 459 IQFDNVHFSYL-TE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 459 I~f~nVsF~Y~-~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~ 534 (599)
|+++||+|+|+ ++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 79999999996 33 5799999999999999999999999999999999999999999999999998642 67889
Q ss_pred ceeeCCCC--CCchhhHHHHhhcCCC-----CCCHHHHHHHHHHcCch--HHHhcCc
Q 007539 535 IGVVPQDT--VLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIH--DTIMNFP 582 (599)
Q Consensus 535 i~~V~Qd~--~LF~gTIreNI~~g~~-----~~sdeei~~A~~~a~l~--d~I~~Lp 582 (599)
|+||+|++ .+++.|++|||.++.. +..++++.++++..++. ++..+.|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh
Confidence 99999996 5788999999998632 12356788999999998 7766655
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.92 E-value=2.6e-25 Score=215.00 Aligned_cols=124 Identities=16% Similarity=0.334 Sum_probs=105.3
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+
T Consensus 9 ~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred ceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 37999999999964 8999999999999999999999999999999999999999999999999986 3688999
Q ss_pred eeCCCCCCchh-hHHHHhhcCCC----CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRL----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~----~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||||++.+|.+ |++||+.++.. ...++++.++++..++.+ . .....+||||
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~-~~~~~~LSgG 137 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-----------L-KKKLGELSQG 137 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-----------T-TSBGGGSCHH
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-----------C-CCChhhCCHH
Confidence 99999999987 99999987521 223667777877776543 2 3456678876
No 29
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2.6e-25 Score=221.08 Aligned_cols=130 Identities=23% Similarity=0.415 Sum_probs=109.3
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
+.|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ ....+|+.|+
T Consensus 14 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEE
T ss_pred CeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEE
Confidence 4699999999995 4679999999999999999999999999999999999999999999999999976 5567888999
Q ss_pred eeCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||||++.+|.+ |++||+.++.. ..+ ++++.++++..++.++..+ ...+||||
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgG 150 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKG 150 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHH
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHH
Confidence 99999999887 99999987521 122 2457778888888765443 33567875
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.91 E-value=1.3e-24 Score=215.27 Aligned_cols=125 Identities=24% Similarity=0.280 Sum_probs=109.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+|+ ++|+|+||+|++||++||+||||||||||+|+|+|+++|+ |+|.+||.++.+.+...+|++|+|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 4899999987 6999999999999999999999999999999999999999 999999999998888899999999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC-CCCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~-~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+|++.+|.+ |++||+.++.. ..+++++.++++..++.++..+ ...+||||
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG 130 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGG 130 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGGCCHH
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------ChhhCCHH
Confidence 9999998875 99999998742 2247788899999888765432 34578876
No 31
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=4.9e-25 Score=221.93 Aligned_cols=130 Identities=19% Similarity=0.287 Sum_probs=107.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~~~~~~lR~~i 535 (599)
.|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.|
T Consensus 21 ~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 599999999995 457999999999999999999999999999999999999999999999999998 77888899999
Q ss_pred eeeCCCCCC-chh--hHHHHhhcCCC-------CCC---HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 536 GVVPQDTVL-FND--TIFHNIRYGRL-------SAT---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~~V~Qd~~L-F~g--TIreNI~~g~~-------~~s---deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||+|++.+ |.. |++|||.++.. ... ++++.++++..++.++.. ....+||||
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 165 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----------QYIGYLSTG 165 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHH
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHH
Confidence 999999865 555 99999998631 112 245667777777755432 234568876
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=1.7e-24 Score=215.95 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=90.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH-HHhhhce
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~-~lR~~i~ 536 (599)
-|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+.. .+|+.|+
T Consensus 7 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 599999999995 45799999999999999999999999999999999999999999999999999887653 4677899
Q ss_pred eeCCCCCCch-hhHHHHhhcC
Q 007539 537 VVPQDTVLFN-DTIFHNIRYG 556 (599)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g 556 (599)
||+|++.+|. .|++||+.++
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~ 106 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIG 106 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGG
T ss_pred EEccCCccCCCCcHHHHHHHH
Confidence 9999999886 5999999886
No 33
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=8.7e-25 Score=218.46 Aligned_cols=122 Identities=28% Similarity=0.402 Sum_probs=103.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC----------CCC
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC----------EVT 527 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~----------~~~ 527 (599)
.|+++||+++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++. +++
T Consensus 6 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 499999999995 457999999999999999999999999999999999999999999999999986 244
Q ss_pred H---HHHhhhceeeCCCCCCchh-hHHHHhhcCC---CCCC----HHHHHHHHHHcCchHH-Hhc
Q 007539 528 L---ESLRKSIGVVPQDTVLFND-TIFHNIRYGR---LSAT----EEEVYDAARRAAIHDT-IMN 580 (599)
Q Consensus 528 ~---~~lR~~i~~V~Qd~~LF~g-TIreNI~~g~---~~~s----deei~~A~~~a~l~d~-I~~ 580 (599)
. ..+|+.|+||+|++.+|.. |++|||.++. ...+ ++++.++++..++.++ ..+
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 149 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK 149 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC
Confidence 3 3568889999999999877 9999998742 1122 3457788888888776 444
No 34
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=7.3e-25 Score=226.52 Aligned_cols=124 Identities=26% Similarity=0.473 Sum_probs=104.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~--~~~~~lR~~i 535 (599)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+....++.|
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 489999999995 4679999999999999999999999999999999999999999999999999833 2233457789
Q ss_pred eeeCCCCCCchh-hHHHHhhcCCCC--C----CHHHHHHHHHHcCchHHHhcCc
Q 007539 536 GVVPQDTVLFND-TIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 536 ~~V~Qd~~LF~g-TIreNI~~g~~~--~----sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+||+|++.+|.. |++|||.|+... . .++++.++++..++.++..+.|
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~ 136 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP 136 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh
Confidence 999999999965 999999997421 1 2356788888888877665554
No 35
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.91 E-value=4.3e-27 Score=238.40 Aligned_cols=168 Identities=11% Similarity=0.106 Sum_probs=137.3
Q ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEee
Q 007539 389 ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSY 468 (599)
Q Consensus 389 v~~g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y 468 (599)
...+..+-+.+.+|+.+..+ ..|+..++..+..++++..+.+|+.++++.+++...... ..+...+.|+++||+|+|
T Consensus 35 ~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 35 YALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHH
T ss_pred HHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEc
Confidence 34466677888888877666 488999999999999999999999999987654322111 111112359999999999
Q ss_pred cCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhh
Q 007539 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT 548 (599)
Q Consensus 469 ~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gT 548 (599)
+ .++|+|+||+|++|+++|||||||||||||+++|+|++ +|+| +++|+|++++|++|
T Consensus 112 ~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 112 F--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp H--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred C--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 7 67999999999999999999999999999999999999 8998 46899999999999
Q ss_pred HHH-HhhcCCCCCCHHHHHHHHHHcCchHHHhc-CcCccccccccCcccCCCC
Q 007539 549 IFH-NIRYGRLSATEEEVYDAARRAAIHDTIMN-FPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 549 Ire-NI~~g~~~~sdeei~~A~~~a~l~d~I~~-Lp~G~dT~vgE~G~~LSG~ 599 (599)
++| ||.++ +++++ +++++++. ||+|+| |.+||||
T Consensus 169 i~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgG 204 (305)
T 2v9p_A 169 LADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSID 204 (305)
T ss_dssp GTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECC
T ss_pred HHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHH
Confidence 998 99997 34554 24577887 999998 7899997
No 36
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=7.7e-25 Score=226.50 Aligned_cols=124 Identities=29% Similarity=0.508 Sum_probs=106.6
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
..|+++||+++|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEE
Confidence 369999999999545679999999999999999999999999999999999999999999999999987654 467899
Q ss_pred eeCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 537 VVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+.|
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~ 143 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP 143 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc
Confidence 99999999975 99999988621 122 356788899888887766655
No 37
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=9.7e-25 Score=227.09 Aligned_cols=122 Identities=25% Similarity=0.386 Sum_probs=105.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+.. ++.|+|
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 489999999995 46799999999999999999999999999999999999999999999999999988765 467999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+.|
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p 131 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 131 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 9999999965 99999988621 123 355778888888877655555
No 38
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=2.5e-24 Score=223.20 Aligned_cols=122 Identities=32% Similarity=0.480 Sum_probs=106.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|+|
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 489999999995 45799999999999999999999999999999999999999999999999999887754 578999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+.|
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 131 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP 131 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh
Confidence 9999999965 99999998742 122 356888999999888766655
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.91 E-value=4.3e-24 Score=222.51 Aligned_cols=128 Identities=20% Similarity=0.378 Sum_probs=104.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|+|
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 499999999995 45799999999999999999999999999999999999999999999999999887754 578999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+.| .+||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGG 145 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGG 145 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSS
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHH
Confidence 9999999965 99999999742 123 245778888888887766655 468886
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.3e-24 Score=225.74 Aligned_cols=122 Identities=26% Similarity=0.484 Sum_probs=104.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|+|
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 489999999995 46799999999999999999999999999999999999999999999999999887754 578999
Q ss_pred eCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
|+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+.|
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 131 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP 131 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh
Confidence 9999999975 99999988621 122 346778888888877665555
No 41
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.90 E-value=3.2e-24 Score=221.68 Aligned_cols=120 Identities=27% Similarity=0.437 Sum_probs=104.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .|++|+||
T Consensus 2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEE
T ss_pred EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEE
Confidence 789999999964 5 9999999999999999999999999999999999999999999999999987654 47789999
Q ss_pred CCCCCCchh-hHHHHhhcCCC---CCCHHHHHHHHHHcCchHHHhcCc
Q 007539 539 PQDTVLFND-TIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~---~~sdeei~~A~~~a~l~d~I~~Lp 582 (599)
+|++.+|.. |++|||.|+.. ...++++.++++..++.++..+.|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~ 125 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP 125 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh
Confidence 999999976 99999988621 112378889999998877665554
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.90 E-value=4.7e-24 Score=210.15 Aligned_cols=124 Identities=26% Similarity=0.445 Sum_probs=103.3
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
|+++||+++|++ +|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.+||+++.+.+ ..|++|+||
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCC
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEE
Confidence 689999999953 59999999999 999999999999999999999999999999999999997643 357789999
Q ss_pred CCCCCCchh-hHHHHhhcCCCCC----CHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 539 PQDTVLFND-TIFHNIRYGRLSA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~----sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
||++.+|.. |++||+.++.... .++++.++++..++.++..+.| .+||||
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG 130 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGG 130 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHH
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHH
Confidence 999999987 9999999874321 1456777788777766544433 468875
No 43
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=2.7e-24 Score=223.11 Aligned_cols=124 Identities=27% Similarity=0.422 Sum_probs=105.2
Q ss_pred eEEEEEEEEeecCCCc--ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---HHHHh
Q 007539 458 SIQFDNVHFSYLTERK--ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLR 532 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~--vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~---~~~lR 532 (599)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ ....+
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 3899999999964 56 999999999999999999999999999999999999999999999999987621 23457
Q ss_pred hhceeeCCCCCCchh-hHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 533 KSIGVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 533 ~~i~~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
+.|+||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+.|
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~ 138 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh
Confidence 889999999999976 99999998742 122 356788889888887766655
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.89 E-value=6.3e-24 Score=210.94 Aligned_cols=116 Identities=28% Similarity=0.373 Sum_probs=97.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-hhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~~~~~~l-R~~ 534 (599)
-|+++||+|+|+ +.++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |..
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 389999999995 46799999999999999999999999999999999999 89999999999999998887665 446
Q ss_pred ceeeCCCCCCchh-hHHHHhhcCCC-----CCC----HHHHHHHHHHcCc
Q 007539 535 IGVVPQDTVLFND-TIFHNIRYGRL-----SAT----EEEVYDAARRAAI 574 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~g~~-----~~s----deei~~A~~~a~l 574 (599)
++||+|++.+|.+ |++||+.++.. ... ++++.++++..++
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 131 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW 131 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCC
Confidence 9999999999986 99999976420 112 2446666766666
No 45
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.89 E-value=5.4e-24 Score=222.20 Aligned_cols=122 Identities=22% Similarity=0.349 Sum_probs=103.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC------CCHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE------VTLESL 531 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~------~~~~~l 531 (599)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 489999999995 4579999999999999999999999999999999999999999999999999876 554 3
Q ss_pred hhhceeeCCCCCCch-hhHHHHhhcCCC--CCC----HHHHHHHHHHcCchHHHhcCc
Q 007539 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFP 582 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~d~I~~Lp 582 (599)
++.|+||+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.|
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~ 137 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP 137 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc
Confidence 578999999999996 599999988621 122 345778888888877665554
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=5.2e-24 Score=212.47 Aligned_cols=124 Identities=21% Similarity=0.322 Sum_probs=105.2
Q ss_pred EEEEEEEEeecCC---CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
|+++||+++|++. +++|+|+||+|+ |+++||+||||||||||+++|+|++ |++|+|.+||.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999642 579999999999 9999999999999999999999999 9999999999998765 33 7789
Q ss_pred e-eeCCCCCCchhhHHHHhhcCCC--CCCHHHHHHHHHHcCch-HHHhcCcCccccccccCcccCCCC
Q 007539 536 G-VVPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 536 ~-~V~Qd~~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~-d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+ ||||++.+ +.|++||+.++.+ +..++++.++++..++. +. ......+||||
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgG 132 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAG 132 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHH
Confidence 9 99999999 9999999988632 34577788888887775 43 33445678876
No 47
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.88 E-value=1.9e-23 Score=207.47 Aligned_cols=118 Identities=24% Similarity=0.351 Sum_probs=98.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
-|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|. +++.|+|
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEE
Confidence 489999999996356899999999999999999999999999999999999999999998 3568999
Q ss_pred eCCCCCCc-hhhHHHHhhcCCC---------C-CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVLF-NDTIFHNIRYGRL---------S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~---------~-~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|||++.+| +.|++|||.++.. . ..++++.++++..++.++..+ ...+||||
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG 132 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGG 132 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHH
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHH
Confidence 99999987 6799999988631 1 113557888888888765443 34578876
No 48
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.88 E-value=1.2e-22 Score=203.42 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=88.2
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCCHHHH-hhh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~~~~~~l-R~~ 534 (599)
.|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.+||.++.+.+.... |..
T Consensus 20 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 599999999995 46799999999999999999999999999999999999 67999999999999988887665 446
Q ss_pred ceeeCCCCCCchh-hHHHHhhc
Q 007539 535 IGVVPQDTVLFND-TIFHNIRY 555 (599)
Q Consensus 535 i~~V~Qd~~LF~g-TIreNI~~ 555 (599)
|+||+|++.+|.+ |++||+.+
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~ 120 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQT 120 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHH
Confidence 9999999999876 89999865
No 49
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.84 E-value=8.9e-26 Score=236.26 Aligned_cols=205 Identities=11% Similarity=0.045 Sum_probs=142.8
Q ss_pred HHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCC-CCCCceE---
Q 007539 385 CSHGILS-GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPL-NLKGGSI--- 459 (599)
Q Consensus 385 ~~~~v~~-g~lt~G~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~I--- 459 (599)
|.+.+.. |.+|.|++.++..++..+..| .+......+..+..+.+|+.+++ ++........... ....+.+
T Consensus 55 G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~itl~ 130 (361)
T 2gza_A 55 SAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRTLE 130 (361)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCCHH
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCCHH
Confidence 4455555 889999999998887766655 22222222233334456666665 2211111000000 0112345
Q ss_pred ------EEEEEEEe---ecC-CCccc---------ccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 460 ------QFDNVHFS---YLT-ERKIL---------DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 460 ------~f~nVsF~---Y~~-~~~vL---------~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
+|+||+|+ |++ ++++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|.++|
T Consensus 131 ~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 131 DYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp HHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred HHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 89999999 964 34566 999999999999999999999999999999999999999999998
Q ss_pred EeCCCCCHHHHhhhceeeC-CCCCC---chhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccCccc
Q 007539 521 QDICEVTLESLRKSIGVVP-QDTVL---FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (599)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~-Qd~~L---F~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~ 595 (599)
. .++....+|+.+++|+ |++.+ +..|+++||.++....+|..+..+++.++++++++.+|.|++|.+++-+.+
T Consensus 211 ~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~ 287 (361)
T 2gza_A 211 V--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAG 287 (361)
T ss_dssp S--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECS
T ss_pred c--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 5 5666666788999999 99887 889999999987655555555556666778899999999999999876553
No 50
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.69 E-value=1.1e-18 Score=162.30 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=72.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCC---HHHHh-hhce----eeCCCCCCchhhHHHHhh
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVT---LESLR-KSIG----VVPQDTVLFNDTIFHNIR 554 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~~~---~~~lR-~~i~----~V~Qd~~LF~gTIreNI~ 554 (599)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 77888 5798 899999998 221
Q ss_pred cCCCCCCHHHHHHHHHHcCchHHHhc-CcCccccccccCcccCCCC
Q 007539 555 YGRLSATEEEVYDAARRAAIHDTIMN-FPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 555 ~g~~~~sdeei~~A~~~a~l~d~I~~-Lp~G~dT~vgE~G~~LSG~ 599 (599)
+ ++++ .|+++++++. +| ||||.|+|+ ||||
T Consensus 77 -~-----~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgG 107 (171)
T 2f1r_A 77 -V-----SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKA 107 (171)
T ss_dssp -C-----CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGG
T ss_pred -C-----Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCC
Confidence 1 1222 7899999999 99 999999995 8986
No 51
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.63 E-value=8e-18 Score=167.78 Aligned_cols=129 Identities=21% Similarity=0.204 Sum_probs=102.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCCHHHHhhhcee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
++++|++|. ++|+++| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. ++.+++
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSI 74 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSE
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCccee
Confidence 344555542 5999999 9999999999999999999999999999998 999999999886553 345778
Q ss_pred eCC-----CCCCchhhHHHHhhcCCCCC-------CHHHHHHHHHHcCch-----------------HHH----------
Q 007539 538 VPQ-----DTVLFNDTIFHNIRYGRLSA-------TEEEVYDAARRAAIH-----------------DTI---------- 578 (599)
Q Consensus 538 V~Q-----d~~LF~gTIreNI~~g~~~~-------sdeei~~A~~~a~l~-----------------d~I---------- 578 (599)
|+| ++..|..+|+.++.. +|++ +.+.++++++.+.-. ..+
T Consensus 75 v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~ 153 (261)
T 2eyu_A 75 VNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQ 153 (261)
T ss_dssp EEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHH
T ss_pred eeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccch
Confidence 888 777889999999987 5655 777777776654311 111
Q ss_pred --hcCcCccccccccCcccCCCC
Q 007539 579 --MNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 579 --~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
..+++++++.|++++.++|||
T Consensus 154 ~~~~l~~~l~~vi~qrl~~~~~G 176 (261)
T 2eyu_A 154 VRIVLSFILQGIISQRLLPKIGG 176 (261)
T ss_dssp HHHHHHHHEEEEEEEEEECCSSS
T ss_pred HHHHHHHHhhEEEEEEeEecCCC
Confidence 235689999999999999876
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.62 E-value=1.2e-16 Score=183.30 Aligned_cols=74 Identities=22% Similarity=0.439 Sum_probs=65.9
Q ss_pred eEEEEEEEEeecC-CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
-|+++||+|+|++ ++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|. ..|+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 4999999999975 368999999999999999999999999999999999999999999999872 1367
Q ss_pred eeCCCC
Q 007539 537 VVPQDT 542 (599)
Q Consensus 537 ~V~Qd~ 542 (599)
||+|++
T Consensus 740 yv~Q~~ 745 (986)
T 2iw3_A 740 YIKQHA 745 (986)
T ss_dssp EECHHH
T ss_pred eeccch
Confidence 777765
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.60 E-value=3.1e-16 Score=173.90 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=84.5
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|+|
T Consensus 357 ~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i~~ 421 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAY 421 (607)
T ss_dssp EEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCEEE
T ss_pred EEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEEEE
Confidence 5899999999953 46899999999999999999999999999999999999999999862 36999
Q ss_pred eCCCCCC-chhhHHHHhhcC-CCC-CCHHHHHHHHHHcCchH
Q 007539 538 VPQDTVL-FNDTIFHNIRYG-RLS-ATEEEVYDAARRAAIHD 576 (599)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g-~~~-~sdeei~~A~~~a~l~d 576 (599)
|||++.+ ++.|+.||+... .+. ..++.+.++++..++.+
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~ 463 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID 463 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTT
T ss_pred EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCch
Confidence 9999876 678999998754 111 12344566666666543
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.60 E-value=3.1e-16 Score=171.98 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=88.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++ ..|+|
T Consensus 287 ~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i~~ 351 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTVAY 351 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCEEE
T ss_pred EEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceEEE
Confidence 5899999999953 46899999999999999999999999999999999999999999862 36999
Q ss_pred eCCCCCC-chhhHHHHhhcC-CCC-CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVL-FNDTIFHNIRYG-RLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g-~~~-~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
|||++.+ ++.|+.||+... .+. ..++.+.++++..++.+. ....-.+||||
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGG 405 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL-----------YDREVNELSGG 405 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG-----------TTSBGGGCCHH
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh-----------hcCChhhCCHH
Confidence 9999976 677999998653 111 123444455554444332 22334568886
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.59 E-value=6.5e-16 Score=169.04 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=92.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhcee
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (599)
.++++|++++|.+ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++|
T Consensus 269 ~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~~ 334 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILSY 334 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEEE
T ss_pred eEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeEe
Confidence 6899999999953 4688889999999999999999999999999999999999999998763 5899
Q ss_pred eCCCCCC-chhhHHHHhhcCCCC---CCHHHHHHHHHHcCchHHHhcCcCccccccccCcccCCCC
Q 007539 538 VPQDTVL-FNDTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKIEGK 599 (599)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~---~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G~~LSG~ 599 (599)
+||++.. +..|++||+.+.... ...+.+.++++..++.++.. ....+||||
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG 389 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-----------SNVNDLSGG 389 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-----------SBGGGCCHH
T ss_pred echhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-----------CChhhCCHH
Confidence 9999874 578999999764322 22344556666666654322 334568886
No 56
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.59 E-value=1.2e-16 Score=167.41 Aligned_cols=120 Identities=22% Similarity=0.197 Sum_probs=99.7
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCCHHHHhhhceeeCC-----CCCCch
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGVVPQ-----DTVLFN 546 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----d~~LF~ 546 (599)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 899988776664 2 36778999999 999999
Q ss_pred hhHHHHhhcCCCCC-------CHHHHHHHHHHcCchHH----------------H-------------hcCcCccccccc
Q 007539 547 DTIFHNIRYGRLSA-------TEEEVYDAARRAAIHDT----------------I-------------MNFPAKYSTVVG 590 (599)
Q Consensus 547 gTIreNI~~g~~~~-------sdeei~~A~~~a~l~d~----------------I-------------~~Lp~G~dT~vg 590 (599)
++|++|+++ +|+. ++++++.+++.++.... + ..+|+++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999998 6776 78888888887754211 1 125789999999
Q ss_pred cCcccCCCC
Q 007539 591 ERGLKIEGK 599 (599)
Q Consensus 591 E~G~~LSG~ 599 (599)
+++.++|||
T Consensus 279 qrl~~~~~G 287 (372)
T 2ewv_A 279 QRLLPKIGG 287 (372)
T ss_dssp EEEEECSSS
T ss_pred EEeEecCCC
Confidence 999998876
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.58 E-value=2.8e-16 Score=174.19 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=88.4
Q ss_pred eEEE--------EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE---------EECC
Q 007539 458 SIQF--------DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI---------RIDG 520 (599)
Q Consensus 458 ~I~f--------~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I---------~idG 520 (599)
.|++ +||+++|++...+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 899999964335899999 999999999999999999999999999999999996 4567
Q ss_pred EeCCCCCHHH--HhhhceeeCCCCC----CchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHH
Q 007539 521 QDICEVTLES--LRKSIGVVPQDTV----LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577 (599)
Q Consensus 521 ~di~~~~~~~--lR~~i~~V~Qd~~----LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~ 577 (599)
.++.++.... .+..+++++|+.. ++.+|++||+.... ..+++.++++..++.+.
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~L~~lgL~~~ 221 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EVGKFEEVVKELELENV 221 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CSSCHHHHHHHTTCTTG
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---HHHHHHHHHHHcCCCch
Confidence 6554321111 1235889998753 44569999997532 23456778888777554
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.54 E-value=7.1e-16 Score=169.16 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=83.7
Q ss_pred EEE-EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE---------EECCEeCCCCCH
Q 007539 459 IQF-DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI---------RIDGQDICEVTL 528 (599)
Q Consensus 459 I~f-~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I---------~idG~di~~~~~ 528 (599)
.++ +||+++|++..++|+|+| +|++||++|||||||||||||+|+|+|+++|++|++ .++|.++.+...
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 589999964336899999 999999999999999999999999999999999996 456765543211
Q ss_pred HHH--hhhceeeCCCCCCc----hhhHHHHhhcCCCCCCHHHHHHHHHHcCchH
Q 007539 529 ESL--RKSIGVVPQDTVLF----NDTIFHNIRYGRLSATEEEVYDAARRAAIHD 576 (599)
Q Consensus 529 ~~l--R~~i~~V~Qd~~LF----~gTIreNI~~g~~~~sdeei~~A~~~a~l~d 576 (599)
... +..+++++|+..++ .+|++||+.... ..+++.++++..++.+
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~ 150 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELEN 150 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTT
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCCh
Confidence 111 23588999976543 359999986422 1345677888877754
No 59
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.54 E-value=7.9e-17 Score=168.99 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=96.1
Q ss_pred ccccceeEeeC--CCEEEEEcCCCCcHHHHHHHHhcCCCCCC----ceEEE----CCEeCCCCCHHHHhhhceeeCCCCC
Q 007539 474 ILDGVSFVVPA--GKSVAIVGTSGSGKSTILRLLFRSFDTHS----GSIRI----DGQDICEVTLESLRKSIGVVPQDTV 543 (599)
Q Consensus 474 vL~~isl~I~~--G~~vaIVG~SGSGKSTL~~LL~gly~p~~----G~I~i----dG~di~~~~~~~lR~~i~~V~Qd~~ 543 (599)
+.+.|++++++ |+++||||+||||||||+++|+|+|+|++ |+|++ +|.++ .++.+++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred CchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCc--ccccc-c-------cCcccCCCC
Q 007539 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK--YSTVV-G-------ERGLKIEGK 599 (599)
Q Consensus 544 LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G--~dT~v-g-------E~G~~LSG~ 599 (599)
+|.+|++|||.+++++..+..++......+..+++..++.+ ++..+ + ++|.++||+
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld 300 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGS 300 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCcc
Confidence 99999999999987766677777777777778888887754 44422 3 567777764
No 60
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.50 E-value=1.6e-17 Score=171.40 Aligned_cols=167 Identities=13% Similarity=0.163 Sum_probs=106.5
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCC-CCCCceEE---------E
Q 007539 393 EMTVGDLVMVNGLLFQLSLPLNFLGS-VYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPL-NLKGGSIQ---------F 461 (599)
Q Consensus 393 ~lt~G~l~~~~~~~~~~~~pl~~l~~-~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~I~---------f 461 (599)
.+|.|++.++..++..+..| .+.. ....+..+..+.+|+..+++.+.. ......... ....+.++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-NDETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-STTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-CCCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999888776655543 1222 111122222334555555532221 110000000 01123455 7
Q ss_pred EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCC
Q 007539 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (599)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd 541 (599)
+||+| | +++++++|+++++|+.++|+|+||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++|.
T Consensus 152 ~~v~f-y---~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~gg 225 (330)
T 2pt7_A 152 NLLDN-K---EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFGG 225 (330)
T ss_dssp TTSTT-H---HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECBT
T ss_pred Cchhh-H---HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeCC
Confidence 77777 7 468999999999999999999999999999999999999999999999976 44444567889999861
Q ss_pred CCCchhhHHHHhhc---CCCC------CCHHHHHHHHHHc
Q 007539 542 TVLFNDTIFHNIRY---GRLS------ATEEEVYDAARRA 572 (599)
Q Consensus 542 ~~LF~gTIreNI~~---g~~~------~sdeei~~A~~~a 572 (599)
.-+.|++|.. .+|+ ++..+++++++.+
T Consensus 226 ----g~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~ 261 (330)
T 2pt7_A 226 ----NITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVL 261 (330)
T ss_dssp ----TBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHH
T ss_pred ----ChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHH
Confidence 2267777633 2343 3445565555543
No 61
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.49 E-value=1.2e-15 Score=148.17 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=61.4
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH-HHHhhhceeeCCCCCCchh----
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVPQDTVLFND---- 547 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~-~~lR~~i~~V~Qd~~LF~g---- 547 (599)
.-|+||||+|++|+++||+||||||||||+++|+|++ | |+|.+ |+++...+. ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 887755432 2356789999999876654
Q ss_pred -------hHHHHhhcCCCCCCHHHHHHHHHHc
Q 007539 548 -------TIFHNIRYGRLSATEEEVYDAARRA 572 (599)
Q Consensus 548 -------TIreNI~~g~~~~sdeei~~A~~~a 572 (599)
++.+| .+|. +++++.++++..
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~ 114 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQN 114 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTT
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCC
Confidence 33444 3443 345666666654
No 62
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.48 E-value=7.3e-16 Score=157.44 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=71.8
Q ss_pred CceEEEEEEEEeecCCCcccccceeE-----------------------eeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 007539 456 GGSIQFDNVHFSYLTERKILDGVSFV-----------------------VPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~~~~~vL~~isl~-----------------------I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~ 512 (599)
.+.|+++||++.|. |+++++++. +++|+++||+|+||||||||+++|+|+++|+
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 35799999999994 677777765 8999999999999999999999999999998
Q ss_pred CceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcC
Q 007539 513 SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG 556 (599)
Q Consensus 513 ~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g 556 (599)
.|. +++++|+||++++..|++||+.+.
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~ 144 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLM 144 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCT
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHH
Confidence 764 469999999999999999999753
No 63
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.45 E-value=2.8e-15 Score=159.93 Aligned_cols=99 Identities=14% Similarity=0.189 Sum_probs=85.1
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE---eCCCCC-----H
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVT-----L 528 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~---di~~~~-----~ 528 (599)
..++++||++.|..+.++|+++ |+|++||+++|+|+||||||||+++|+|+++|+.|.|.++|+ ++.++. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 3689999999997567899999 999999999999999999999999999999999999999998 554432 3
Q ss_pred HHHhhhceeeCCC--CCCchhhHHHHhhcC
Q 007539 529 ESLRKSIGVVPQD--TVLFNDTIFHNIRYG 556 (599)
Q Consensus 529 ~~lR~~i~~V~Qd--~~LF~gTIreNI~~g 556 (599)
..+++.++||+|+ +....-|+.+|+.+.
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ 238 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRI 238 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5688899999994 334567999998763
No 64
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.45 E-value=2.4e-15 Score=138.01 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=72.9
Q ss_pred EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCC
Q 007539 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (599)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd 541 (599)
+|++++|. +..+++++||+|++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+. ...+ .+|+|+
T Consensus 11 ~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~ 83 (158)
T 1htw_A 11 EFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYH 83 (158)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEE
T ss_pred HHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccceec
Confidence 34566664 346899999999999999999999999999999999999 9999999999887421 1112 289999
Q ss_pred CCCchhhHHHHhh-cC
Q 007539 542 TVLFNDTIFHNIR-YG 556 (599)
Q Consensus 542 ~~LF~gTIreNI~-~g 556 (599)
+.+|.-|+.||+. +|
T Consensus 84 ~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 84 FDLYRLADPEELEFMG 99 (158)
T ss_dssp EECTTCSCTTHHHHST
T ss_pred cccccCCcHHHHHHcC
Confidence 9999889999995 45
No 65
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.44 E-value=1.9e-15 Score=144.43 Aligned_cols=99 Identities=25% Similarity=0.349 Sum_probs=79.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhh
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT 548 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gT 548 (599)
+++|+.++||||||||||||+++|+|+++ |..|+ +||+++..++.+.+++.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 88998 699999999999999886 7999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccc
Q 007539 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (599)
Q Consensus 549 IreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vg 590 (599)
+.+|+ ||. ++++++++++.+.+.-+ .-.|+|+++...
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~ 112 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKK 112 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHh
Confidence 99998 774 68899999987533222 235677776543
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.43 E-value=3e-13 Score=155.27 Aligned_cols=107 Identities=18% Similarity=0.262 Sum_probs=82.8
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
..|...|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... . ..++
T Consensus 434 ~~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~----~--~~~~ 498 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE----E--CRTV 498 (986)
T ss_dssp CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----T--SCEE
T ss_pred ceeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----c--eeEE
Confidence 4688889999995 4679999999999999999999999999999999996 654 5654321 1 2378
Q ss_pred eeCCCC-CC-chhhHHHHhhcCCCCCCHHHHHHHHHHcCch-HHHh
Q 007539 537 VVPQDT-VL-FNDTIFHNIRYGRLSATEEEVYDAARRAAIH-DTIM 579 (599)
Q Consensus 537 ~V~Qd~-~L-F~gTIreNI~~g~~~~sdeei~~A~~~a~l~-d~I~ 579 (599)
|++|++ .+ .+-|+.||+.+..... ++++.++++..++. +...
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~ 543 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIA 543 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHH
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhc
Confidence 999985 34 4569999997621112 77889999999884 4433
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=7.9e-14 Score=154.33 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=81.6
Q ss_pred EEEEEeecCCCcccccceeEeeCC-----CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 462 DNVHFSYLTERKILDGVSFVVPAG-----KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~G-----~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
++++|+|++...+++|+||++++| |++||+||||||||||+++|+|+.+|++|+. +. +..++
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVS 416 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEE
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEE
Confidence 678899976567899999999999 7899999999999999999999999999973 11 23699
Q ss_pred eeCCCCC-CchhhHHHHhhcCC--CCCCHHHHHHHHHHcCchHH
Q 007539 537 VVPQDTV-LFNDTIFHNIRYGR--LSATEEEVYDAARRAAIHDT 577 (599)
Q Consensus 537 ~V~Qd~~-LF~gTIreNI~~g~--~~~sdeei~~A~~~a~l~d~ 577 (599)
|+||++. .|+.|++||+.... .....+...++++..++.+.
T Consensus 417 ~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 460 (608)
T 3j16_B 417 MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI 460 (608)
T ss_dssp EECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT
T ss_pred EecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh
Confidence 9999975 57889999985421 12345556677777776543
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.7e-15 Score=162.46 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=72.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-e-EEECCEeCCCCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-S-IRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G-~-I~idG~di~~~~~~~lR~~i 535 (599)
.|+++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| +.|+.+
T Consensus 118 mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~i 181 (460)
T 2npi_A 118 MKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQPI 181 (460)
T ss_dssp HHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSCS
T ss_pred hhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCCe
Confidence 477888888884 79999999999999999999999999999999999999 9 99998 137789
Q ss_pred eeeCCCCCCch----hhHHHHhhcCC
Q 007539 536 GVVPQDTVLFN----DTIFHNIRYGR 557 (599)
Q Consensus 536 ~~V~Qd~~LF~----gTIreNI~~g~ 557 (599)
++|||++.+|. .|++||+ ++.
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~ 206 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQ 206 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSC
T ss_pred eeeccchhhcccccccchhhhh-ccc
Confidence 99999996553 4899999 753
No 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.39 E-value=7.5e-14 Score=154.51 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=82.3
Q ss_pred EEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-----------EECCEeCCCCCHHHH
Q 007539 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-----------RIDGQDICEVTLESL 531 (599)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I-----------~idG~di~~~~~~~l 531 (599)
|++++|.+....|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++.++....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 57899976666788877 699999999999999999999999999999999998 445544443333334
Q ss_pred hhhce--eeCCCCCCc----h---hhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcC
Q 007539 532 RKSIG--VVPQDTVLF----N---DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 532 R~~i~--~V~Qd~~LF----~---gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~L 581 (599)
.+.+. +.+|....+ . .++.+++.... ...++++.++++..++.+...+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl~~~~~~~ 218 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQLENVLKRD 218 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTCTGGGGSC
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCCcchhCCC
Confidence 44443 334432221 1 26777776543 34567888999988887654443
No 70
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.34 E-value=2.6e-13 Score=137.86 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=67.8
Q ss_pred ccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHH--hhhceeeCCCCC-Cc-hh
Q 007539 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTV-LF-ND 547 (599)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qd~~-LF-~g 547 (599)
+++||++++|+.++|||+|||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678899999999999999999999999999999999999999999886653 2334 457999999997 65 45
Q ss_pred hHHHHhhcC
Q 007539 548 TIFHNIRYG 556 (599)
Q Consensus 548 TIreNI~~g 556 (599)
|++||+.++
T Consensus 171 ~v~e~l~~~ 179 (302)
T 3b9q_A 171 VLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999764
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.32 E-value=5.2e-14 Score=148.38 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=76.0
Q ss_pred CcccccceeEeeCCC--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH
Q 007539 472 RKILDGVSFVVPAGK--------------------SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL 531 (599)
Q Consensus 472 ~~vL~~isl~I~~G~--------------------~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l 531 (599)
+.+|+||||+|++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999998763
Q ss_pred hhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchH
Q 007539 532 RKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHD 576 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d 576 (599)
| .++++|++...+-|+.||+.++.+ ++++.+.++..++.+
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYE 148 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGG
T ss_pred e--eEEeccccccCCeeehHhhcccch---HHHHHHHHHHcCCCc
Confidence 1 288999986557899999988754 244667777777654
No 72
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.30 E-value=1.1e-13 Score=132.80 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=50.6
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
+++|+|+ ++|+++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.|+||||++
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence 4689985 89999999999999999999999999 99999994 333321 2234678899999997
No 73
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.28 E-value=3.8e-13 Score=147.13 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=79.0
Q ss_pred EEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-----------EECCEeCCCCCHHHH
Q 007539 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-----------RIDGQDICEVTLESL 531 (599)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I-----------~idG~di~~~~~~~l 531 (599)
+++.+|..+...|.++. +.++||.+||+||||||||||+|+|+|++.|++|+| .++|.++..+..+..
T Consensus 4 ~~~~~~~~~~f~l~~l~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLP-TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTSCEEECCC-CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCceeecCCC-CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 56788975544444433 245999999999999999999999999999999999 677776643322211
Q ss_pred ------hhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHH
Q 007539 532 ------RKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577 (599)
Q Consensus 532 ------R~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~ 577 (599)
...+.+++|.+.++.+|+++++...+ ..+++.++++..++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~l~~l~l~~~ 131 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKID---ERGKKDEVKELLNMTNL 131 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---CSSCHHHHHHHTTCGGG
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcch---hHHHHHHHHHHcCCchh
Confidence 22356667777788899999886432 23456677777777553
No 74
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.28 E-value=8.8e-13 Score=136.58 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=69.1
Q ss_pred ccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHH--hhhceeeCCCCC-Cc-hh
Q 007539 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTV-LF-ND 547 (599)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qd~~-LF-~g 547 (599)
+++||++++|+.++|||+|||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999886543 2333 457999999987 54 56
Q ss_pred hHHHHhhcC
Q 007539 548 TIFHNIRYG 556 (599)
Q Consensus 548 TIreNI~~g 556 (599)
|++|||.++
T Consensus 228 tv~e~l~~~ 236 (359)
T 2og2_A 228 VLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999999764
No 75
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.27 E-value=1.2e-12 Score=147.95 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=47.8
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------CceEEECCEe
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL---------------------RLLFRSFDTH-------SGSIRIDGQD 522 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~---------------------~LL~gly~p~-------~G~I~idG~d 522 (599)
..++|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45699999999999999999999999999998 8999999998 4556666655
Q ss_pred CCCCCHHHHhhhceeeCCCCCCc--------------------hhhHHHHhhcC
Q 007539 523 ICEVTLESLRKSIGVVPQDTVLF--------------------NDTIFHNIRYG 556 (599)
Q Consensus 523 i~~~~~~~lR~~i~~V~Qd~~LF--------------------~gTIreNI~~g 556 (599)
+.. ..++.+++|+|.+.++ ..|++||+.+.
T Consensus 110 ~~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~ 159 (670)
T 3ux8_A 110 TSR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFF 159 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC-------
T ss_pred hhc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHh
Confidence 433 2355677887765543 45899999875
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.27 E-value=3.4e-13 Score=134.94 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=44.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchh-hHHHHhhcCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRL 558 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~g-TIreNI~~g~~ 558 (599)
++|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.+|..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 489999999999999999999999999999999988743 3456789999999988865 99999999863
No 77
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.25 E-value=1.7e-12 Score=138.34 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=69.8
Q ss_pred cccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHH--HhhhceeeCCCCCCc-hh
Q 007539 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LES--LRKSIGVVPQDTVLF-ND 547 (599)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~----~~~--lR~~i~~V~Qd~~LF-~g 547 (599)
-+++||++++|++++|||+||||||||++.|+|++.|+.|+|.++|.|..... +.. .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999988765431 122 377899999998765 67
Q ss_pred hHHHHhhcC
Q 007539 548 TIFHNIRYG 556 (599)
Q Consensus 548 TIreNI~~g 556 (599)
|+++||.++
T Consensus 363 tV~e~l~~a 371 (503)
T 2yhs_A 363 VIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 78
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=2.5e-13 Score=142.99 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=65.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~--vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i 535 (599)
.+++++ +++|++ .+ |+++||++++|+. +||||+||||||||+++|+|+. ++|.++...+....++.+
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 456666 778853 45 9999999999999 9999999999999999999983 566666554444556789
Q ss_pred eeeCCCCCCc-hhhHHHHhhcCCCCCCH
Q 007539 536 GVVPQDTVLF-NDTIFHNIRYGRLSATE 562 (599)
Q Consensus 536 ~~V~Qd~~LF-~gTIreNI~~g~~~~sd 562 (599)
+|++|++.++ +-|+.||+.+|.. .+.
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~-~~~ 111 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQ-INK 111 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC--CCH
T ss_pred EEEeecCccccccchhhhhhhhhc-ccc
Confidence 9999999887 5699999999863 443
No 79
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.24 E-value=1.1e-12 Score=148.10 Aligned_cols=57 Identities=35% Similarity=0.511 Sum_probs=47.0
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh---------------------cCCCCCCceEEECCEeCCCCC
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF---------------------RSFDTHSGSIRIDGQDICEVT 527 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~---------------------gly~p~~G~I~idG~di~~~~ 527 (599)
..++|+||||+|++||++||+||||||||||+++|+ +-+.+.+|.|.++|.++...+
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTP 411 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSST
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCC
Confidence 356899999999999999999999999999998764 122344578999999887654
No 80
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.23 E-value=2.5e-13 Score=138.85 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=77.7
Q ss_pred ceEEEEEEEEeecCCCcccccceeEe-------------------eCCCEEEEEcCCCCcHHHHHHHHhcCCC--CCCce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVV-------------------PAGKSVAIVGTSGSGKSTILRLLFRSFD--THSGS 515 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I-------------------~~G~~vaIVG~SGSGKSTL~~LL~gly~--p~~G~ 515 (599)
+.|+++||++.|. ++++++++++ ++|+++||+|+||||||||+++|.|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 4689999999993 6999999998 9999999999999999999999999998 99999
Q ss_pred EEE---CCEeCCCCCHHHHhhhceeeCCCCCCc-hhhHHHHhhc
Q 007539 516 IRI---DGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRY 555 (599)
Q Consensus 516 I~i---dG~di~~~~~~~lR~~i~~V~Qd~~LF-~gTIreNI~~ 555 (599)
|.+ ||.+.. ...++.+++| |+..++ .-|+.+|+.+
T Consensus 113 i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 113 VELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp EEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred EEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 999 987742 2456789999 776654 4488888765
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.23 E-value=3.6e-13 Score=129.45 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=49.0
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchh-hH
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TI 549 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~g-TI 549 (599)
..++++| .+|++|++++|+||||||||||+++|+|+++ .|.+++.....-+....++.++|++|++.+|.. |+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 3578988 7999999999999999999999999999995 355554221111112236789999999988764 56
Q ss_pred HHHh
Q 007539 550 FHNI 553 (599)
Q Consensus 550 reNI 553 (599)
.+|+
T Consensus 82 ~~~l 85 (207)
T 1znw_A 82 QGEL 85 (207)
T ss_dssp TTCE
T ss_pred cCCc
Confidence 6665
No 82
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.23 E-value=2.2e-12 Score=127.28 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhH
Q 007539 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (599)
Q Consensus 470 ~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTI 549 (599)
++.++|+|+||++++|+.+||+||+|||||||+++|+|++ |.+.+| ..++.++|++||++...-|.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCH
Confidence 3557999999999999999999999999999999999977 777665 35778999999975445689
Q ss_pred HHHhhc
Q 007539 550 FHNIRY 555 (599)
Q Consensus 550 reNI~~ 555 (599)
.+|+.+
T Consensus 76 ~~~~~~ 81 (245)
T 2jeo_A 76 EQKAKA 81 (245)
T ss_dssp HHHHHH
T ss_pred hHhhhh
Confidence 999864
No 83
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.23 E-value=5e-13 Score=132.59 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=86.0
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCEeC-CCCCHHHHhhhceeeCCC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIR--------IDGQDI-CEVTLESLRKSIGVVPQD 541 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~---gly~p~~G~I~--------idG~di-~~~~~~~lR~~i~~V~Qd 541 (599)
++++.+ ++|++++|+|+|||||||++++|+ |++.|++|.|+ .+|.++ .......+++.+++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 999998 456788999999999954
Q ss_pred ------CCCchhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccccC
Q 007539 542 ------TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGER 592 (599)
Q Consensus 542 ------~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~ 592 (599)
.++++.++.+||. .+++.+++..+..++.|.+....+...++++
T Consensus 96 ~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~ 145 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFREA 145 (252)
T ss_dssp ETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCS
T ss_pred CCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhC
Confidence 5677888888875 3667777777777887876666555555443
No 84
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.22 E-value=1.7e-12 Score=132.15 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=70.9
Q ss_pred eEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCCHHHHhhhceeeCCCCC-------------
Q 007539 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRKSIGVVPQDTV------------- 543 (599)
Q Consensus 480 l~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qd~~------------- 543 (599)
|++.+|+.++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9998876542211246999999985
Q ss_pred ---Cc-hhhHHHHhhcCC---CCCCHHHHHHHHHHcCch-HHHhcCcC
Q 007539 544 ---LF-NDTIFHNIRYGR---LSATEEEVYDAARRAAIH-DTIMNFPA 583 (599)
Q Consensus 544 ---LF-~gTIreNI~~g~---~~~sdeei~~A~~~a~l~-d~I~~Lp~ 583 (599)
+| +-|+ ||+.++. ....++.+.++++..+|. +...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 34 3477 9998853 122356789999999994 66666553
No 85
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.19 E-value=1.5e-13 Score=141.98 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=73.5
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH----HHHhhh
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKS 534 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~----~~lR~~ 534 (599)
|+.+|+++.|. ...+|+++||++++|++++|+|++|||||||++.|+|++.|++|+|.+.|.|...... ...|..
T Consensus 30 ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 44556666674 3468999999999999999999999999999999999999999999999998854321 235778
Q ss_pred ceeeCCCCCCch
Q 007539 535 IGVVPQDTVLFN 546 (599)
Q Consensus 535 i~~V~Qd~~LF~ 546 (599)
+++|+|++.+|.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 999999999985
No 86
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.19 E-value=8.2e-13 Score=147.06 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=60.4
Q ss_pred eEEEEEEEEeecCC-Ccccccc----------eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCC
Q 007539 458 SIQFDNVHFSYLTE-RKILDGV----------SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICE 525 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~-~~vL~~i----------sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~ 525 (599)
.++++|+++.|+.. +++|+.+ ++++|. +||||+||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 58999999999642 3555555 377776 999999999999999999999989 79999999999632
Q ss_pred C---CHHHHhhhceeeCCCCCCch-hhHHHHhhc
Q 007539 526 V---TLESLRKSIGVVPQDTVLFN-DTIFHNIRY 555 (599)
Q Consensus 526 ~---~~~~lR~~i~~V~Qd~~LF~-gTIreNI~~ 555 (599)
. ....+|+.|+|++|++.+++ .|++|||.+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 1 23568899999999998765 599999965
No 87
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.18 E-value=4.5e-12 Score=135.03 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=74.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC---------------------------
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--------------------------- 510 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~--------------------------- 510 (599)
.++++|+ .++++++|++++| +++|||+||||||||+++|.++..
T Consensus 42 ~L~i~nf--------~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~ 112 (415)
T 4aby_A 42 RLEIRNL--------ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDES 112 (415)
T ss_dssp EEEEEEE--------TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC------
T ss_pred eehhccc--------cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCC
Confidence 4666664 4789999999999 999999999999999999966553
Q ss_pred -----------CCCceEEECCEeCCCCCHHHHhhh-ceeeCCCCCCchhhHHHHhhcC
Q 007539 511 -----------THSGSIRIDGQDICEVTLESLRKS-IGVVPQDTVLFNDTIFHNIRYG 556 (599)
Q Consensus 511 -----------p~~G~I~idG~di~~~~~~~lR~~-i~~V~Qd~~LF~gTIreNI~~g 556 (599)
+.+|++++||.+++..+..++++. +++++|+..++-.+-.++..+-
T Consensus 113 ~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~l 170 (415)
T 4aby_A 113 EADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLL 170 (415)
T ss_dssp --CEEEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHH
T ss_pred ceEEEEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHH
Confidence 457899999999987777888777 7999999988877766555443
No 88
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.18 E-value=5.1e-12 Score=121.53 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=69.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchh---hHHHHhhc--
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND---TIFHNIRY-- 555 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~g---TIreNI~~-- 555 (599)
..++|+++||+|+||||||||+++|+|++.| .++||+||+++++. |+++|+.+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3579999999999999999999999999875 58999999999854 57676544
Q ss_pred CCCC-CCHHHHHHHHHHcCchHHHhcCcCccccccccCc
Q 007539 556 GRLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593 (599)
Q Consensus 556 g~~~-~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vgE~G 593 (599)
+.+. .+.+++.++++..++.+.+.. | .++...|+++
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~ 96 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRS 96 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEEC
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCC
Confidence 3332 356778889988888887766 5 6787777754
No 89
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.16 E-value=2.1e-11 Score=123.92 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----HHHH--hhhceeeCCCCCCch-hhHHHHhhc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTVLFN-DTIFHNIRY 555 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qd~~LF~-gTIreNI~~ 555 (599)
+|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |..+++|+|++.++. .|++||+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999987654 2233 457999999998775 488999865
No 90
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.15 E-value=7.9e-13 Score=127.17 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=67.1
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcC-CCCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSA 560 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g-~~~~ 560 (599)
.++|+++||+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+..+|+... +.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999986 5 258889999998988888886421 1111
Q ss_pred CHHHHHHHHHHcCchHHHhcCcCc--cccccccCcccCCCC
Q 007539 561 TEEEVYDAARRAAIHDTIMNFPAK--YSTVVGERGLKIEGK 599 (599)
Q Consensus 561 sdeei~~A~~~a~l~d~I~~Lp~G--~dT~vgE~G~~LSG~ 599 (599)
. .+.+...+.+++..++.| +++++.++|..+|||
T Consensus 80 ~-----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g 115 (208)
T 3c8u_A 80 P-----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIA 115 (208)
T ss_dssp G-----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEE
T ss_pred C-----chhhHHHHHHHHHHHhcCCceecccCCccccCCCC
Confidence 0 111111223445555555 778888888888764
No 91
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.14 E-value=7.5e-13 Score=133.68 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=67.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCC---
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--- 559 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~--- 559 (599)
+++.++||+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|+.++++|+.+++++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999864 2 0 1 4456677999999999999999876321
Q ss_pred CCHHHHHHHHHHcCchHHHhcCcCccccc------cccCcccCCCC
Q 007539 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTV------VGERGLKIEGK 599 (599)
Q Consensus 560 ~sdeei~~A~~~a~l~d~I~~Lp~G~dT~------vgE~G~~LSG~ 599 (599)
.+....-++.+.+.+.+++..+++|++|. +.+.+.++|||
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgG 138 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKG 138 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHH
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCc
Confidence 00000011222334668899999998875 34455666664
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.12 E-value=9.4e-12 Score=128.74 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=69.3
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC-------CCHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-------VTLES 530 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~-------~~~~~ 530 (599)
-++.+++++.|..+..+|+++ |+|.+||+++|+|+||||||||+++|+|+.+|+.|.|.++|.+.++ .....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 588899999997567899999 9999999999999999999999999999999999999999875322 12233
Q ss_pred HhhhceeeCCC
Q 007539 531 LRKSIGVVPQD 541 (599)
Q Consensus 531 lR~~i~~V~Qd 541 (599)
+++.+.+++|.
T Consensus 124 ~~~~v~~~~~~ 134 (347)
T 2obl_A 124 LSKCVLVVTTS 134 (347)
T ss_dssp HTTEEEEEECT
T ss_pred hhceEEEEECC
Confidence 55567777764
No 93
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.12 E-value=1.6e-11 Score=131.45 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHH--------H
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES--------L 531 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~--------l 531 (599)
++.+++... .++|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~ 83 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKL 83 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGS
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhc
Confidence 455555432 3579999999999 999999999999999999999999999999999999987655331 2
Q ss_pred hhhceeeCCCCC
Q 007539 532 RKSIGVVPQDTV 543 (599)
Q Consensus 532 R~~i~~V~Qd~~ 543 (599)
+..+.|+.+++.
T Consensus 84 ~~~~~~~~~~~~ 95 (483)
T 3euj_A 84 KAGVCYAVLETV 95 (483)
T ss_dssp CSSEEEEEEEEE
T ss_pred CCCceEEEEehh
Confidence 233466666643
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.11 E-value=2.2e-11 Score=138.59 Aligned_cols=65 Identities=29% Similarity=0.485 Sum_probs=53.1
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHH-HhcCC-------CC-----------------
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL-LFRSF-------DT----------------- 511 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~L-L~gly-------~p----------------- 511 (599)
..|+++|+++. +|+||||+|++|+++||+|+||||||||++. |+|+. .|
T Consensus 501 ~~L~v~~l~~~------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 501 GWLELNGVTRN------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp CEEEEEEEEET------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred ceEEEEeeeec------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 46999999862 6999999999999999999999999999996 66543 22
Q ss_pred -CCc-------eEEECCEeCCCCC
Q 007539 512 -HSG-------SIRIDGQDICEVT 527 (599)
Q Consensus 512 -~~G-------~I~idG~di~~~~ 527 (599)
.+| .|.+||.++..-+
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~ 598 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTP 598 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSST
T ss_pred cccCcccccceEEEECCeeCCCCc
Confidence 466 6899998886543
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.10 E-value=6.7e-12 Score=137.75 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=65.4
Q ss_pred eecCCCccccccee-EeeCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCC
Q 007539 467 SYLTERKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRL--LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (599)
Q Consensus 467 ~Y~~~~~vL~~isl-~I~~G~~vaIVG~SGSGKSTL~~L--L~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~ 543 (599)
+|+.+.++|+++++ .|++|+.++|+|+||||||||+++ +.|+++|.+|.|+++|.+. ..+....++.+++++|++.
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 45666789999999 999999999999999999999999 6899999999999999873 2233455678999999865
No 96
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.08 E-value=2.2e-11 Score=123.91 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=69.4
Q ss_pred eEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCCHHHHh-hhceeeCCCCCC------chhhH
Q 007539 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLR-KSIGVVPQDTVL------FNDTI 549 (599)
Q Consensus 480 l~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i---dG~di~~~~~~~lR-~~i~~V~Qd~~L------F~gTI 549 (599)
+++.+|++++|+|+||||||||+|+|+ +.+|+.|+|.+ +|.++..... ..+ +.++||+|+|-+ .+-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 356679999999999999999999999 99999999999 9998876442 222 379999999965 24578
Q ss_pred HHHh--hcC---------C----CCCCHHHHHHHHHHcCchH-HHhc
Q 007539 550 FHNI--RYG---------R----LSATEEEVYDAARRAAIHD-TIMN 580 (599)
Q Consensus 550 reNI--~~g---------~----~~~sdeei~~A~~~a~l~d-~I~~ 580 (599)
||+ .++ . .+...+.+.++++..++.+ ..++
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~ 283 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS 283 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence 898 443 1 1123467889999998875 4443
No 97
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.08 E-value=2.2e-12 Score=125.41 Aligned_cols=108 Identities=24% Similarity=0.296 Sum_probs=86.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEE--------CCEeCCC-CCHHHHhhhceeeCCCC------CCc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSIRI--------DGQDICE-VTLESLRKSIGVVPQDT------VLF 545 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly---~p~~G~I~i--------dG~di~~-~~~~~lR~~i~~V~Qd~------~LF 545 (599)
.+.+++|+|++||||||++++|.+.| .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999987 7887763 56678899999999986 556
Q ss_pred hhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcCcCccccccc-cCcccCCC
Q 007539 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG-ERGLKIEG 598 (599)
Q Consensus 546 ~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT~vg-E~G~~LSG 598 (599)
..++.+++. ++++.+++..+.+++++.+...+.++.+. ++|.-++|
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg 130 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADG 130 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 677777763 57889999999999999987777766553 34444443
No 98
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.05 E-value=1.1e-11 Score=119.95 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=66.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhh-H----HHHh
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT-I----FHNI 553 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gT-I----reNI 553 (599)
..++|+.++|+||||||||||+++|+|+++| ..|+|.+++.+.+. ..++.++|++|++.+|... + .||+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 5789999999999999999999999999986 78999998876543 2356899999999999864 4 5887
Q ss_pred hcCCC--CCCHHHHHHHHHH
Q 007539 554 RYGRL--SATEEEVYDAARR 571 (599)
Q Consensus 554 ~~g~~--~~sdeei~~A~~~ 571 (599)
.+... ..+.+++.++++.
T Consensus 88 ~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 88 EVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EETTEEEEEEHHHHHHHHTT
T ss_pred HHHhccCCCCHHHHHHHHhc
Confidence 66421 1235666666653
No 99
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.04 E-value=8.6e-11 Score=120.47 Aligned_cols=76 Identities=22% Similarity=0.227 Sum_probs=64.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHH----HHhhhce--eeCCCCCCch-hhHHHHh
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE----SLRKSIG--VVPQDTVLFN-DTIFHNI 553 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~----~lR~~i~--~V~Qd~~LF~-gTIreNI 553 (599)
..++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+...... .++++++ +++|+..++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999876633 3455544 9999988875 5899999
Q ss_pred hcC
Q 007539 554 RYG 556 (599)
Q Consensus 554 ~~g 556 (599)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 100
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=4e-11 Score=121.48 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=59.2
Q ss_pred eEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCCHHHHhhhceeeCCCCCCch-----hhHHH
Q 007539 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRKSIGVVPQDTVLFN-----DTIFH 551 (599)
Q Consensus 480 l~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qd~~LF~-----gTIre 551 (599)
+++.+|++++|+|+||+|||||+|.|+|+..|..|+|.+ +|.++.... +.++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 888776533 222223899999997754 578 9
Q ss_pred Hhh--cC---------------CCCCCHHHHHHHHHHcCchHH
Q 007539 552 NIR--YG---------------RLSATEEEVYDAARRAAIHDT 577 (599)
Q Consensus 552 NI~--~g---------------~~~~sdeei~~A~~~a~l~d~ 577 (599)
||. |. ..+..+..+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 011234568889998888653
No 101
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.03 E-value=6.6e-12 Score=118.81 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=69.2
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCc
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF 545 (599)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34456899999999999999999999999986 78888 799999999999999876 6999999
Q ss_pred hhhHHHHhhcCCCCCCHHHHHHHHHH
Q 007539 546 NDTIFHNIRYGRLSATEEEVYDAARR 571 (599)
Q Consensus 546 ~gTIreNI~~g~~~~sdeei~~A~~~ 571 (599)
.+++.+| .||.+ .+.+.++++.
T Consensus 88 ~~~~~~n-~YGt~---~~~v~~~l~~ 109 (197)
T 3ney_A 88 FGSYQGN-MFGTK---FETVHQIHKQ 109 (197)
T ss_dssp EEEETTE-EEEEE---HHHHHHHHHT
T ss_pred hhhhhce-ecccc---hhhHHHHHhc
Confidence 9999999 48864 4455555443
No 102
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.03 E-value=6.5e-11 Score=122.19 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=65.7
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEC-CEeCCCCCHHHHhhhceeeCCCCCCchh-hH
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRID-GQDICEVTLESLRKSIGVVPQDTVLFND-TI 549 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-p~~G~I~id-G~di~~~~~~~lR~~i~~V~Qd~~LF~g-TI 549 (599)
.-++++++. .+|++++|+|+||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4899999999999999999999999999 999999987 76543 2345679999999998865 89
Q ss_pred HHHhhcCCCCCCHHHHH----HHHHHcCchHHHh
Q 007539 550 FHNIRYGRLSATEEEVY----DAARRAAIHDTIM 579 (599)
Q Consensus 550 reNI~~g~~~~sdeei~----~A~~~a~l~d~I~ 579 (599)
+|+-. ...+.+++. ++++.+++.+|..
T Consensus 279 ~e~~l---~~l~~~e~~~~~~e~l~~~gl~~f~~ 309 (358)
T 2rcn_A 279 REFGL---WHLEPEQITQGFVEFHDYLGHCKYRD 309 (358)
T ss_dssp HTCCC---CCCCHHHHHHTSGGGGGGTTCSSSTT
T ss_pred HHhhh---cCCCHHHHHHHHHHHHHHcCCchhcC
Confidence 99632 235555543 3334444444433
No 103
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.02 E-value=2.8e-10 Score=130.64 Aligned_cols=39 Identities=33% Similarity=0.616 Sum_probs=33.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
.+++++++ .+.|+||||+|++|+++||+|+||||||||+
T Consensus 589 ~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 589 SLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred eEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 45655542 4579999999999999999999999999997
No 104
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.00 E-value=5.2e-11 Score=112.41 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=56.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhc
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRY 555 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~ 555 (599)
.+++|+.++|+|+||||||||+++|++. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 789999999976533221 1345788998765 56789999865
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.99 E-value=1.8e-11 Score=117.25 Aligned_cols=56 Identities=23% Similarity=0.372 Sum_probs=37.8
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEE
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----DTHSGSIRI 518 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly-----~p~~G~I~i 518 (599)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 78999999996 368888 899999999999999999999999999998 899998865
No 106
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.99 E-value=2.6e-10 Score=130.17 Aligned_cols=43 Identities=35% Similarity=0.486 Sum_probs=38.6
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
.|+++|++. .+|+||||+|++|+++||+|+||||||||++.|+
T Consensus 629 ~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 629 WLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 588998852 4799999999999999999999999999999854
No 107
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.98 E-value=9.8e-11 Score=111.74 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=56.9
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchh-hHHHHh
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNI 553 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~g-TIreNI 553 (599)
|+++++|+.++|+||||||||||+++|+|++ | .+.+++.++...+....+..++|++|++.+|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 5778999999999999999999999999997 4 688999888777666667889999999988865 444444
No 108
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.98 E-value=1.1e-11 Score=131.21 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=72.1
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CCHHHHhhhceeeC---------C
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRKSIGVVP---------Q 540 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----~~~~~lR~~i~~V~---------Q 540 (599)
+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.. ++...+++.+++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 37999999999999999999999999999999999999988742 11223455666644 9
Q ss_pred CCCCc--h-----hhHHHHhhcCCC--------C-CCHHHHHHHHHHcCchHH
Q 007539 541 DTVLF--N-----DTIFHNIRYGRL--------S-ATEEEVYDAARRAAIHDT 577 (599)
Q Consensus 541 d~~LF--~-----gTIreNI~~g~~--------~-~sdeei~~A~~~a~l~d~ 577 (599)
+|.++ . .|+.+|+.++.. . .+..+..+.+...++.++
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 98763 2 489999865320 1 122344455666666543
No 109
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.97 E-value=2.4e-10 Score=117.41 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=71.7
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC-----------------------------
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS----------------------------- 508 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl----------------------------- 508 (599)
.|+++|. .+|. +++++++.+| .++|+|+||||||||++.|..+
T Consensus 5 ~L~i~nf-r~~~------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~ 76 (322)
T 1e69_A 5 KLYLKGF-KSFG------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAG 76 (322)
T ss_dssp EEEEESB-TTBC------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCS
T ss_pred EEEEeCc-eeec------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCc
Confidence 5777771 2342 2578889999 9999999999999999999843
Q ss_pred ---------------------CCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCc-hhhHHHHhhcC
Q 007539 509 ---------------------FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYG 556 (599)
Q Consensus 509 ---------------------y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF-~gTIreNI~~g 556 (599)
+.+.+|.+++||.+++.-+...+...+++.||+..++ .|+|.+|+...
T Consensus 77 ~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~ 146 (322)
T 1e69_A 77 SAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS 146 (322)
T ss_dssp EEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-
T ss_pred eEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc
Confidence 2445679999999986656667777899999998766 99999999763
No 110
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.95 E-value=6.8e-11 Score=115.43 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=34.4
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh-cCC------------CCCCceEEECCEeCCCCCHHHHh
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-RSF------------DTHSGSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~-gly------------~p~~G~I~idG~di~~~~~~~lR 532 (599)
...+++||++++|+.++|+||||||||||+++|+ |++ +|..|++ +|.++...+.+.+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~ 85 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFL 85 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhh
Confidence 4678999999999999999999999999999999 999 6677765 55554444444444
No 111
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.94 E-value=2e-11 Score=118.39 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=52.9
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH--------H
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL--------E 529 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~--------~ 529 (599)
.|+++|+...|.. ++++++ +.++|+||||||||||+++|+|++.|++|+|.++|.++...+. .
T Consensus 9 ~l~l~~~~~~~~~--------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFAR--------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEEE--------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccCC--------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 6889998665531 466666 8999999999999999999999999999999999999844332 2
Q ss_pred HHhhhceeeCCC
Q 007539 530 SLRKSIGVVPQD 541 (599)
Q Consensus 530 ~lR~~i~~V~Qd 541 (599)
.++..+++|+|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 346789999985
No 112
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.93 E-value=4.6e-10 Score=128.55 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=39.2
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
..++++|++. .+|+||||+|++|+++||+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3699999852 3799999999999999999999999999999853
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.92 E-value=8.8e-11 Score=110.06 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=64.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEE----------ECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHH
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIR----------IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIre 551 (599)
.+|+.++|+||||||||||+++|++++++ ..|.|. +||++...++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 445543 47777777888888774 57899999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHH
Q 007539 552 NIRYGRLSATEEEVYDAARR 571 (599)
Q Consensus 552 NI~~g~~~~sdeei~~A~~~ 571 (599)
| .||.+ .+++.++++.
T Consensus 80 n-~yg~~---~~~i~~~l~~ 95 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIHEQ 95 (180)
T ss_dssp E-EEEEE---HHHHHHHHHT
T ss_pred c-ccccc---HHHHHHHHHC
Confidence 9 57753 5566666653
No 114
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.91 E-value=2.8e-10 Score=110.45 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=59.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-------CCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHh
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-------HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-------~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI 553 (599)
-|++|+.++|+||||||||||+++|+|++.| ..|.|++++.+. .+ ++.+++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996665 445788888642 11 2457888899888888999999
Q ss_pred hcCCC
Q 007539 554 RYGRL 558 (599)
Q Consensus 554 ~~g~~ 558 (599)
.+..+
T Consensus 95 ~~~~~ 99 (231)
T 4a74_A 95 YVARA 99 (231)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88764
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=9.1e-11 Score=124.03 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=56.8
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
+.|+++||+++|+ +.++++|++|+| +|||+||||||||++.|+|+..|..| .+|.++...+ ...++.++
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEE
Confidence 3689999999995 467999999998 99999999999999999999886666 2444332211 11245689
Q ss_pred eeCCCCCCc-hhhHHHHhhcCCC
Q 007539 537 VVPQDTVLF-NDTIFHNIRYGRL 558 (599)
Q Consensus 537 ~V~Qd~~LF-~gTIreNI~~g~~ 558 (599)
+++|++.++ .-||.||+.+++.
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CC------CEEEEEEECC-----
T ss_pred EEEecCCcccceeeeechhhhhh
Confidence 999998876 6799999988764
No 116
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.89 E-value=3.1e-10 Score=117.73 Aligned_cols=100 Identities=23% Similarity=0.263 Sum_probs=76.2
Q ss_pred cccccc-eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCC----ce-EEECCEeCCCCCHHHHhhhceeeCCCCCC
Q 007539 473 KILDGV-SFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHS----GS-IRIDGQDICEVTLESLRKSIGVVPQDTVL 544 (599)
Q Consensus 473 ~vL~~i-sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly--~p~~----G~-I~idG~di~~~~~~~lR~~i~~V~Qd~~L 544 (599)
+.|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |. |++|+.+.- .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356664 6899999999999999999999999999998 6666 67 999997651 25678999999999
Q ss_pred chhhHHHHhhcCCCCCCHHHHHHHHHHcCchHHHhcC
Q 007539 545 FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (599)
Q Consensus 545 F~gTIreNI~~g~~~~sdeei~~A~~~a~l~d~I~~L 581 (599)
+..++.|||.+.++ .+.++..+.++.+ ...+.++
T Consensus 192 ~~~~v~~ni~~~~~-~~~~~~~~~l~~~--~~~~~~l 225 (349)
T 1pzn_A 192 DPDEVLKHIYVARA-FNSNHQMLLVQQA--EDKIKEL 225 (349)
T ss_dssp CHHHHGGGEEEEEC-CSHHHHHHHHHHH--HHHHHHS
T ss_pred CHHHHhhCEEEEec-CChHHHHHHHHHH--HHHHHHh
Confidence 99999999998764 3333333444432 3444443
No 117
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.86 E-value=1.8e-10 Score=108.73 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
|++++|+|+||||||||+++|+|+++ ++| |.+||.+++++. .+++.++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec
Confidence 78999999999999999999999999 999 999999987654 5788999999985
No 118
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.85 E-value=1.2e-09 Score=118.69 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=73.2
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCch--hhHH
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN--DTIF 550 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~--gTIr 550 (599)
++++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++. ++.++++.|+.. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47889999999999999999999999999999999999999999999865222221 356788888765 33 3677
Q ss_pred HHhhcC---CC------CCCHHHHHHHHHHc
Q 007539 551 HNIRYG---RL------SATEEEVYDAARRA 572 (599)
Q Consensus 551 eNI~~g---~~------~~sdeei~~A~~~a 572 (599)
+++... +| +..++|...+++.+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~ 354 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAM 354 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhh
Confidence 776433 33 45666666666654
No 119
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.78 E-value=2.1e-10 Score=117.50 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=64.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC--------CCCCceEEECCEeCCCCC---------------HHHHhhhceee---C
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF--------DTHSGSIRIDGQDICEVT---------------LESLRKSIGVV---P 539 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly--------~p~~G~I~idG~di~~~~---------------~~~lR~~i~~V---~ 539 (599)
+.++|+|++|||||||++.|+|++ .|+.|+|.+||.++.+.+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998764 45788889988 7
Q ss_pred CCCC-CchhhHHHHhhcCCC
Q 007539 540 QDTV-LFNDTIFHNIRYGRL 558 (599)
Q Consensus 540 Qd~~-LF~gTIreNI~~g~~ 558 (599)
|++. .|+.++.||+.+++|
T Consensus 85 q~~~~~~~~~v~E~~~l~~p 104 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP 104 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH
T ss_pred hcCCCCCCEEEEeCCCCCCH
Confidence 8876 478999999998865
No 120
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.78 E-value=5.3e-10 Score=105.24 Aligned_cols=78 Identities=26% Similarity=0.491 Sum_probs=60.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHH
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIre 551 (599)
|+.++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.++..+. |+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~---~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHh---hcceeeEEEEec
Confidence 67899999999999999999999998 888986 888887777777776543 677777777777
Q ss_pred HhhcCCCCCCHHHHHHHHHH
Q 007539 552 NIRYGRLSATEEEVYDAARR 571 (599)
Q Consensus 552 NI~~g~~~~sdeei~~A~~~ 571 (599)
|+ ||.+ .+++.++++.
T Consensus 76 ~~-yg~~---~~~i~~~l~~ 91 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKS 91 (186)
T ss_dssp EE-EEEE---HHHHHHHHHT
T ss_pred ee-ccCc---HHHHHHHHHc
Confidence 75 6643 4445444443
No 121
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.76 E-value=2e-09 Score=125.67 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=57.4
Q ss_pred ceEEEEE-----EEEeecCCCcccccceeEeeC-------CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 457 GSIQFDN-----VHFSYLTERKILDGVSFVVPA-------GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 457 ~~I~f~n-----VsF~Y~~~~~vL~~isl~I~~-------G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
+.|+++| |++.|+++.++++|++|++++ |+.++|+|||||||||++|.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 3699999 999996567899999999988 999999999999999999999 99863
Q ss_pred CCCHHHHhhhce-eeCCCCCCchhhHHHHh
Q 007539 525 EVTLESLRKSIG-VVPQDTVLFNDTIFHNI 553 (599)
Q Consensus 525 ~~~~~~lR~~i~-~V~Qd~~LF~gTIreNI 553 (599)
+.++| ||||++. .-|+.|||
T Consensus 815 -------~aqiG~~Vpq~~~--~l~v~d~I 835 (1022)
T 2o8b_B 815 -------MAQMGCYVPAEVC--RLTPIDRV 835 (1022)
T ss_dssp -------HHTTTCCEESSEE--EECCCSBE
T ss_pred -------HhheeEEeccCcC--CCCHHHHH
Confidence 34676 9999873 45666666
No 122
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.75 E-value=1.4e-09 Score=101.03 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=28.1
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
|+||++++|+.++|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999754
No 123
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.72 E-value=1.3e-09 Score=107.36 Aligned_cols=52 Identities=31% Similarity=0.489 Sum_probs=36.0
Q ss_pred eEEEEEE-EEeecCCCcccccceeEeeC---CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 458 SIQFDNV-HFSYLTERKILDGVSFVVPA---GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 458 ~I~f~nV-sF~Y~~~~~vL~~isl~I~~---G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++++|| +|+|.++.++|+|+||+|++ |+.++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99995456899999999999 9999999999999999999998844
No 124
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.70 E-value=5e-09 Score=106.37 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=35.4
Q ss_pred EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC-CCCCCceEEECCEeCCCCCHHHHhhhceeeCC
Q 007539 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS-FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (599)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl-y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 540 (599)
+|++++|. ++.++++++|+| +|||+||+|||||++.|+|. ..|++| |.++|.++.. +. . ++.+++++|
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEec
Confidence 47788885 467999999998 99999999999999999998 889999 9999887653 11 1 457899999
Q ss_pred CCCCc-hhhHHHHhhcCC
Q 007539 541 DTVLF-NDTIFHNIRYGR 557 (599)
Q Consensus 541 d~~LF-~gTIreNI~~g~ 557 (599)
+..++ .-||.||..++.
T Consensus 71 ~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp ---CCEEEEEEEEC----
T ss_pred CCCcccCcchhhhhhhhh
Confidence 87654 558888887764
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.69 E-value=1.4e-09 Score=106.92 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=57.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHh--cCCCCCCceEEECCEeCCCCCHHHHhhhce
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~--gly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (599)
++++++++.|+.-..+|.+ .|++|+.++|+||||||||||++.|+ ++.++.+|.+.+++.+..+ .....++.++
T Consensus 7 ~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g 82 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFG 82 (251)
T ss_dssp -CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTT
T ss_pred cccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcC
Confidence 5566777766532234433 79999999999999999999999999 7757788888888754321 1223445688
Q ss_pred eeCCCC
Q 007539 537 VVPQDT 542 (599)
Q Consensus 537 ~V~Qd~ 542 (599)
+++|+.
T Consensus 83 ~~~~~~ 88 (251)
T 2ehv_A 83 WDFEKY 88 (251)
T ss_dssp CCHHHH
T ss_pred CChHHH
Confidence 888874
No 126
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.69 E-value=1.6e-09 Score=109.83 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=56.0
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCCHHHHhhhceeeCCCCC
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Qd~~ 543 (599)
-++|+++++.+++|+.++|+|++|||||||++.|++...|++| .|.+.+.+ .+...+++.+..+.|+..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~ 91 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVR 91 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCC
Confidence 4589999999999999999999999999999999999999988 77654432 356677766666655543
No 127
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.68 E-value=1.3e-09 Score=104.19 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=46.1
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCC
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL 558 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~ 558 (599)
-=++++|+.++|+|++||||||++++|.+.++ .+.+++||++++++ +|+.++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~ 68 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKN 68 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcccc
Confidence 34688999999999999999999999999875 48899999999987 67766543
No 128
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.66 E-value=2.5e-09 Score=102.01 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=40.1
Q ss_pred eEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCC
Q 007539 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (599)
Q Consensus 480 l~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~ 543 (599)
++|++|+.++|+|+|||||||++++|.+++.|+.| +.+ +....+... ..+..++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~-~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMRE-GEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCT-TCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCC-CccCCCceEEcCHH
Confidence 47899999999999999999999999999977655 222 222222111 11234777777653
No 129
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.66 E-value=1.2e-08 Score=105.65 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=70.2
Q ss_pred EEEEEeecC-CCccccccee-------EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCCHHHHh
Q 007539 462 DNVHFSYLT-ERKILDGVSF-------VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 462 ~nVsF~Y~~-~~~vL~~isl-------~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~di~~~~~~~lR 532 (599)
.+++|+|.+ ..+.|+++.+ ..++|+.++|+|||||||||++++|+|+++|+ .|.|...+.++ ++. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 578888853 4467888877 78899999999999999999999999999997 56775544443 332 23
Q ss_pred hhceeeCCCCCC-----chhhHHHHhhcCCCC------CCHHHHHHHHH
Q 007539 533 KSIGVVPQDTVL-----FNDTIFHNIRYGRLS------ATEEEVYDAAR 570 (599)
Q Consensus 533 ~~i~~V~Qd~~L-----F~gTIreNI~~g~~~------~sdeei~~A~~ 570 (599)
...++++|...- |...++.-++ .+|+ ++|.+..+.+.
T Consensus 168 ~~~~~v~q~~~~~~~~~~~~~La~aL~-~~PdvillDEp~d~e~~~~~~ 215 (356)
T 3jvv_A 168 SKKCLVNQREVHRDTLGFSEALRSALR-EDPDIILVGEMRDLETIRLAL 215 (356)
T ss_dssp CSSSEEEEEEBTTTBSCHHHHHHHHTT-SCCSEEEESCCCSHHHHHHHH
T ss_pred ccccceeeeeeccccCCHHHHHHHHhh-hCcCEEecCCCCCHHHHHHHH
Confidence 456777775532 3334444433 2342 45666555433
No 130
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.60 E-value=5.6e-09 Score=97.51 Aligned_cols=52 Identities=25% Similarity=0.283 Sum_probs=39.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
.+++|+||||||||||+++|+|++. |.++|.+.++......++.++|++|++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 3689999999999999999999995 678887765443225678899999986
No 131
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.59 E-value=1.8e-09 Score=102.77 Aligned_cols=61 Identities=25% Similarity=0.387 Sum_probs=47.7
Q ss_pred EEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE--EECCEeCCC
Q 007539 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI--RIDGQDICE 525 (599)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I--~idG~di~~ 525 (599)
|++..+ .+....+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ ++||.++..
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 4 NIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred CCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 444433 23346778889999999999999999999999999999997 78998 999987753
No 132
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.58 E-value=1.1e-08 Score=97.23 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=51.9
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHH-hhhceeeCCCCCCchh-hHHHHhh
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGVVPQDTVLFND-TIFHNIR 554 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~l-R~~i~~V~Qd~~LF~g-TIreNI~ 554 (599)
.++-++|+.++|+|++||||||++++|++.+ |.+.+||.++.. .... +..+++++|++.++.. ++.+|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 3667899999999999999999999999987 999999987753 2222 3357999998766543 6667764
No 133
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.57 E-value=1.6e-08 Score=114.63 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=60.6
Q ss_pred CceEEEEEEEEeec----CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEECCEeCCCCCHHH
Q 007539 456 GGSIQFDNVHFSYL----TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTLES 530 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~----~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~-p~~G~I~idG~di~~~~~~~ 530 (599)
.+.|++++. ++| +++++++|+||+ |+.++|+|||||||||++|+++|+.. |+.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 347899988 454 235799999999 99999999999999999999999874 78887531 1
Q ss_pred HhhhceeeCCCCCCchh-hHHHHhhcCC
Q 007539 531 LRKSIGVVPQDTVLFND-TIFHNIRYGR 557 (599)
Q Consensus 531 lR~~i~~V~Qd~~LF~g-TIreNI~~g~ 557 (599)
.+..+++|+| +|.. ++.||+..+.
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g~ 636 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGGK 636 (765)
T ss_dssp SEEEECCCSE---EEEECCC------CC
T ss_pred hccceeeHHH---hhccCCHHHHHHhcc
Confidence 2456899988 5654 8999998874
No 134
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=4.8e-09 Score=100.54 Aligned_cols=71 Identities=28% Similarity=0.379 Sum_probs=54.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEE----------ECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHH
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIR----------IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIre 551 (599)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|++...++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 456666667777877765 5777887777666
Q ss_pred HhhcCC
Q 007539 552 NIRYGR 557 (599)
Q Consensus 552 NI~~g~ 557 (599)
| .||.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 6 3553
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.51 E-value=1.2e-08 Score=102.11 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=66.7
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCC-CCc-hhhHH
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-VLF-NDTIF 550 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~-~LF-~gTIr 550 (599)
.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++.+....+.++.+++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999877 79999999987776677788899999985 333 23566
Q ss_pred HHhhcC
Q 007539 551 HNIRYG 556 (599)
Q Consensus 551 eNI~~g 556 (599)
|||...
T Consensus 110 Deid~~ 115 (274)
T 2x8a_A 110 DEVDAL 115 (274)
T ss_dssp ETCTTT
T ss_pred ehhhhh
Confidence 777554
No 136
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.50 E-value=3.4e-08 Score=100.84 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=66.0
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH----HHH-----hhhceee-CCCCC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESL-----RKSIGVV-PQDTV 543 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~----~~l-----R~~i~~V-~Qd~~ 543 (599)
++++++|++++|+.++|+|++|+||||++..|++.+.+..|+|++.+.|+..... ..| +..+.++ +|+..
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3467889999999999999999999999999999999999999998888765431 344 5679999 78765
Q ss_pred Cchh-hHHHHhhc
Q 007539 544 LFND-TIFHNIRY 555 (599)
Q Consensus 544 LF~g-TIreNI~~ 555 (599)
.... ++.+|+..
T Consensus 174 ~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 174 ADPASVVFDAIKK 186 (320)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5543 67888754
No 137
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.50 E-value=9.7e-09 Score=101.05 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCc-hhhHHHHhhc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRY 555 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~---gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF-~gTIreNI~~ 555 (599)
+++.++|+|++|||||||+++|+ |+..|+.|+|.++|.+.. ..+...+..++|+..++ +.|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999999999886532 24556677778877655 5589999853
No 138
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.49 E-value=1.8e-08 Score=94.68 Aligned_cols=62 Identities=27% Similarity=0.195 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCc-hhhHHHHhhc
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRY 555 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF-~gTIreNI~~ 555 (599)
|+.++|+|+||||||||++.|++ |.+|.+.+||.++.+. ..+++++|+...+ ..|+++|+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH
Confidence 68899999999999999999997 7789999998665332 2467888876433 4588888753
No 139
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.47 E-value=2e-08 Score=103.11 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=51.2
Q ss_pred CceEEEEEEEEeecCCCcccc--------------cceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 456 GGSIQFDNVHFSYLTERKILD--------------GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 456 ~~~I~f~nVsF~Y~~~~~vL~--------------~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
.+.|+|+||+|.||+++.+|+ |+.+.|.+||+++|||++|+|||||+++|++...
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 468999999999998888999 9999999999999999999999999999999763
No 140
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.46 E-value=5.3e-08 Score=95.10 Aligned_cols=77 Identities=18% Similarity=0.308 Sum_probs=56.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc--CCCC-----CCceEEECCEeCCC-CCHHHHhhhceeeCCCCCCchhhHHHH
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFR--SFDT-----HSGSIRIDGQDICE-VTLESLRKSIGVVPQDTVLFNDTIFHN 552 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~g--ly~p-----~~G~I~idG~di~~-~~~~~lR~~i~~V~Qd~~LF~gTIreN 552 (599)
-|++|+.++|+||+|||||||++.|++ ..+| ..|.+++++.+.-. -....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5655 67899999876311 1233456678887764 6788
Q ss_pred hhcCCCCCCHHHH
Q 007539 553 IRYGRLSATEEEV 565 (599)
Q Consensus 553 I~~g~~~~sdeei 565 (599)
+.+..+ .+.++.
T Consensus 93 ~~~~~~-~~~~~~ 104 (243)
T 1n0w_A 93 VAYARA-FNTDHQ 104 (243)
T ss_dssp EEEEEC-CSHHHH
T ss_pred eEEEec-CCHHHH
Confidence 877543 344443
No 141
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.41 E-value=1.7e-08 Score=113.41 Aligned_cols=107 Identities=20% Similarity=0.110 Sum_probs=87.8
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhh--
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR-- 554 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~-- 554 (599)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++++|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987665 78999 8999999999999999999999999999999988884
Q ss_pred cCCCCCCHHHHHHHHHHcCchHHHhcCcCcccc
Q 007539 555 YGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (599)
Q Consensus 555 ~g~~~~sdeei~~A~~~a~l~d~I~~Lp~G~dT 587 (599)
.|..+. ..++..+++.++..-++-+..+|++.
T Consensus 82 pG~~~f-~~~~~~~l~~ad~~ilVvD~~~g~~~ 113 (665)
T 2dy1_A 82 PGYGDF-VGEIRGALEAADAALVAVSAEAGVQV 113 (665)
T ss_dssp CCSGGG-HHHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred CCccch-HHHHHHHHhhcCcEEEEEcCCcccch
Confidence 454333 36788899988877666666666653
No 142
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.40 E-value=1.8e-08 Score=94.04 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=63.8
Q ss_pred ccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCE--eCCCCCH----HHHhhhceeeCCCCC------
Q 007539 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ--DICEVTL----ESLRKSIGVVPQDTV------ 543 (599)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~--di~~~~~----~~lR~~i~~V~Qd~~------ 543 (599)
+++++++.+| .++|+|+||||||||+++|.++..+..|...-.+. ++-.... ...+..|.++.|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 5789999999 99999999999999999999988887776533321 1100000 023457899999853
Q ss_pred ----CchhhHHHH----hhcCCCCCCHHHHHHHHHHcCch
Q 007539 544 ----LFNDTIFHN----IRYGRLSATEEEVYDAARRAAIH 575 (599)
Q Consensus 544 ----LF~gTIreN----I~~g~~~~sdeei~~A~~~a~l~ 575 (599)
.+..++..+ +.......+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 222222111 11112235678888888887764
No 143
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=9.2e-08 Score=90.80 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=24.9
Q ss_pred eecC--CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 467 SYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 467 ~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+|++ ..++++|+||++++|+.++|+|++||||||+++.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4543 457999999999999999999999999999999999765
No 144
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.38 E-value=1.4e-08 Score=111.04 Aligned_cols=90 Identities=23% Similarity=0.248 Sum_probs=63.9
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eE-EECCEeCCC-------CCH---HHHhhhceeeCCCCCCch
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SI-RIDGQDICE-------VTL---ESLRKSIGVVPQDTVLFN 546 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G-~I-~idG~di~~-------~~~---~~lR~~i~~V~Qd~~LF~ 546 (599)
...+++|+.++|+|+||||||||+++|++.+.|++| +| ++||.++.+ ++. ..+++.+++|+|+
T Consensus 363 ~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~----- 437 (552)
T 3cr8_A 363 PPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE----- 437 (552)
T ss_dssp CCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH-----
T ss_pred ccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH-----
Confidence 346889999999999999999999999999999987 78 499977642 222 2345678999887
Q ss_pred hhHHHHhhcCCC----CCCHHHHHHHHHHcC
Q 007539 547 DTIFHNIRYGRL----SATEEEVYDAARRAA 573 (599)
Q Consensus 547 gTIreNI~~g~~----~~sdeei~~A~~~a~ 573 (599)
-+..+|+.+... ....+++.++++..+
T Consensus 438 l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 438 ITKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HHhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 245566654321 122345666666554
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.38 E-value=4.1e-09 Score=108.73 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=68.8
Q ss_pred EEEEeecCCCcccccceeEeeCC-------CEEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEECCEeCCCCCHHHH
Q 007539 463 NVHFSYLTERKILDGVSFVVPAG-------KSVAIVGTSGSGKSTILRLLFRSF----DTHSGSIRIDGQDICEVTLESL 531 (599)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~G-------~~vaIVG~SGSGKSTL~~LL~gly----~p~~G~I~idG~di~~~~~~~l 531 (599)
+++..|. .+.+++++++.+++| +.++|+||+|+|||||+++|++.. .|.+|.+..++.++..+.....
T Consensus 23 ~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~ 101 (334)
T 1in4_A 23 SLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE 101 (334)
T ss_dssp SGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCC
T ss_pred cHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHcc
Confidence 3333443 346899999999887 899999999999999999999998 7888988887766543211112
Q ss_pred hhhceeeCCCCCCchhhHHHHhh
Q 007539 532 RKSIGVVPQDTVLFNDTIFHNIR 554 (599)
Q Consensus 532 R~~i~~V~Qd~~LF~gTIreNI~ 554 (599)
+..|.+++|...++. ++.|++.
T Consensus 102 ~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 102 RGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp TTCEEEEETGGGCCH-HHHHHHH
T ss_pred CCCEEEEcchhhcCH-HHHHHHH
Confidence 456999999888776 8888874
No 146
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.37 E-value=1.1e-07 Score=99.77 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=53.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCc-----eEEECCEeC-CCCCHHHHhhhceeeCCCCCCchhhHHHH
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRL--LFRSFDTHSG-----SIRIDGQDI-CEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~L--L~gly~p~~G-----~I~idG~di-~~~~~~~lR~~i~~V~Qd~~LF~gTIreN 552 (599)
-|++|+.++|+||||||||||++. +.+..+|+.| .|++|+.+. .......+++.+++.+| ++.||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4566666444 889998763 22223345667887666 78899
Q ss_pred hhcCCC
Q 007539 553 IRYGRL 558 (599)
Q Consensus 553 I~~g~~ 558 (599)
+.+.++
T Consensus 247 i~~~~~ 252 (400)
T 3lda_A 247 VAYARA 252 (400)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 988764
No 147
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.36 E-value=1.7e-08 Score=98.38 Aligned_cols=64 Identities=22% Similarity=0.112 Sum_probs=50.3
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC------CHHH----HhhhceeeCCCCCCch
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------TLES----LRKSIGVVPQDTVLFN 546 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~------~~~~----lR~~i~~V~Qd~~LF~ 546 (599)
+.+.++|+.++|+|++||||||++++|.++ .|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 445689999999999999999999999997 79999999876432 1211 2457899999876654
No 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.34 E-value=5.5e-08 Score=94.14 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=53.8
Q ss_pred CCccccccee-EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhh---hceeeCCC
Q 007539 471 ERKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK---SIGVVPQD 541 (599)
Q Consensus 471 ~~~vL~~isl-~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~---~i~~V~Qd 541 (599)
+-+.|+++.. .+++|+.++|+||+|||||||++.|++...+..|.|.+.+.+. +.+.++. .+++.+|+
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~ 79 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEE 79 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGG
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHH
Confidence 4567899888 8999999999999999999999999999888889998866543 3333332 45666554
No 149
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.29 E-value=1.3e-07 Score=98.41 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=51.1
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL 544 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~L 544 (599)
++++++++++++|+.++|+||+|||||||+++|++. .+|++..-+ .+.+.++..+++++|...+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~-----~~~~~~~~~lg~~~q~~~~ 220 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN-----LPLDRLNFELGVAIDQFLV 220 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS-----SCTTTHHHHHGGGTTCSCE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe-----ccchhHHHHHHHhcchhHH
Confidence 589999999999999999999999999999999985 468776511 1222344468899998765
No 150
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.23 E-value=6.3e-08 Score=97.04 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=69.5
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (599)
+++++...|. +..+++++++++++| ++|+||+|+|||||++.|++... .|.|.+++.++.+......++.+.+++
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 3455555563 346899999999999 99999999999999999999875 899999998876655556677788888
Q ss_pred CCCC-Cc-hhhHHHHh
Q 007539 540 QDTV-LF-NDTIFHNI 553 (599)
Q Consensus 540 Qd~~-LF-~gTIreNI 553 (599)
|++. .+ .-++.|||
T Consensus 126 ~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEI 141 (278)
T ss_dssp HHHHTSCSEEEEEETH
T ss_pred HHHHhcCCcEEehhhh
Confidence 8764 33 33566777
No 151
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.22 E-value=6.6e-08 Score=95.45 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=70.1
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceee
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (599)
.+++++...|. +..+++++++++++| ++|+||+|+|||||++.|++... .|.|.++|.++.+......++.+..+
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 45566666663 346899999999999 99999999999999999999875 89999999887655555566778888
Q ss_pred CCCCC-Cc-hhhHHHHh
Q 007539 539 PQDTV-LF-NDTIFHNI 553 (599)
Q Consensus 539 ~Qd~~-LF-~gTIreNI 553 (599)
+|+.. .+ .-++.|||
T Consensus 101 ~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHTTSSSEEEEEETH
T ss_pred HHHHHhcCCeEEEehhh
Confidence 88754 22 33566776
No 152
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.12 E-value=7.8e-07 Score=82.24 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=41.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhh-hceeeCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQDT 542 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~-~i~~V~Qd~ 542 (599)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .++++.|+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDD 60 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcc
Confidence 569999999999999999999999875 889999877653 222332 466666653
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.07 E-value=3e-07 Score=92.91 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=52.4
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (599)
+.++++++.|++. + ++++|+ +|+.++++|++|+||||++..|++++.+..|+|.+.+.|.+.
T Consensus 77 ~~~~~l~~~~~~~-~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHHCCC-C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 4556666777432 1 678888 999999999999999999999999999999999999988765
No 154
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.07 E-value=1.8e-06 Score=77.89 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=40.5
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCCCC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDICEV 526 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~di~~~ 526 (599)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 56665 8999999999999999999999999987 68 889988766543
No 155
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.07 E-value=7.3e-06 Score=94.60 Aligned_cols=60 Identities=22% Similarity=0.194 Sum_probs=49.2
Q ss_pred ceEEEEEEEEeecC----CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHH--------hcCCCCCCceE
Q 007539 457 GSIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL--------FRSFDTHSGSI 516 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~----~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL--------~gly~p~~G~I 516 (599)
+.|++++...-+-. ++.|++|++|++++|+.++|+|||||||||++|.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~ 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 46888886543312 34799999999999999999999999999999999 88888876543
No 156
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.06 E-value=8.9e-07 Score=84.07 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=40.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~ 528 (599)
..++|+.++|+|+|||||||+++.|.++++|..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 367899999999999999999999999999999999887766544443
No 157
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.04 E-value=1.9e-06 Score=82.55 Aligned_cols=79 Identities=16% Similarity=0.059 Sum_probs=55.0
Q ss_pred Cccccccee-EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHH
Q 007539 472 RKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (599)
Q Consensus 472 ~~vL~~isl-~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIr 550 (599)
-+.|+++.. -+++|+.++|+|++|||||||++.+++ .+..+.++++..+ ..+.+.+++.. +...+....+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~----~~~~~~~~~~~ 77 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMA----ETRGLNPEEAL 77 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHH----HTTTCCHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHH----HhcCCChHHHh
Confidence 356777665 799999999999999999999999999 5556667777643 24555555432 12222334577
Q ss_pred HHhhcCCC
Q 007539 551 HNIRYGRL 558 (599)
Q Consensus 551 eNI~~g~~ 558 (599)
+|+.+.++
T Consensus 78 ~~~~~~~~ 85 (220)
T 2cvh_A 78 SRFILFTP 85 (220)
T ss_dssp HHEEEECC
T ss_pred hcEEEEec
Confidence 88876654
No 158
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.98 E-value=1.2e-06 Score=89.04 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=36.5
Q ss_pred CcccccceeEeeCCC------EEEEEcCCCCcHHHHHHHHhcCCC--CCCceE
Q 007539 472 RKILDGVSFVVPAGK------SVAIVGTSGSGKSTILRLLFRSFD--THSGSI 516 (599)
Q Consensus 472 ~~vL~~isl~I~~G~------~vaIVG~SGSGKSTL~~LL~gly~--p~~G~I 516 (599)
.+.|++++.++.+++ .+||+|+|||||||++++|.++++ |+.|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 346777777777776 899999999999999999999987 455553
No 159
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.95 E-value=3e-06 Score=89.36 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=39.8
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCceEEECC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS-----------FDTHSGSIRIDG 520 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl-----------y~p~~G~I~idG 520 (599)
--++++|++++|+.++|||++|||||||++.|++. +.|+.|.|.+++
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 35789999999999999999999999999999998 455556665554
No 160
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.95 E-value=2.1e-06 Score=86.96 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=50.7
Q ss_pred ceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCH----HHH--hhhceeeCCCC
Q 007539 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESL--RKSIGVVPQDT 542 (599)
Q Consensus 478 isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~----~~l--R~~i~~V~Qd~ 542 (599)
++++.++|+.++|+|++||||||+++.|++++.+..|+|.+.+.|...... +.| +..+.+++|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s 167 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSE 167 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCST
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCC
Confidence 455678899999999999999999999999999999999998888754321 122 22467777643
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=2.5e-06 Score=88.21 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=36.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL 544 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~g-ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~L 544 (599)
..+.|+||+|+||||+++.+++ ++.|+.|.|.++|.+...... -+..+++++|++++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHL 94 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceE
Confidence 3499999999999999999999 899999999999988764332 36789999998875
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.92 E-value=1.3e-06 Score=81.96 Aligned_cols=37 Identities=38% Similarity=0.591 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CCceEEECCEeC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDT-----------HSGSIRIDGQDI 523 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p-----------~~G~I~idG~di 523 (599)
+++|+|++|||||||++.++|...| ..|+|.+||.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 7899999999999999999998765 579999999765
No 163
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.91 E-value=3.3e-06 Score=79.72 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=41.6
Q ss_pred EEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc----CC----CCCCceEEECCEeC
Q 007539 465 HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SF----DTHSGSIRIDGQDI 523 (599)
Q Consensus 465 sF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g----ly----~p~~G~I~idG~di 523 (599)
+|+|++..++++++|++.+++ +++++|++|+|||||++.+.+ .| .++.+.+.++|.++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 567877778999999998887 689999999999999999987 23 34567788888654
No 164
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.89 E-value=1.1e-06 Score=81.59 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=34.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDIC 524 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~di~ 524 (599)
++|+.++|+|++||||||++++|.+.+.| .| .|.+|+..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 7777876554
No 165
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.88 E-value=2.2e-06 Score=93.69 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=41.6
Q ss_pred EEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 007539 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (599)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~ 515 (599)
++.+++++.|++-..+| +..|++|+.++|+|++|||||||++.++++..|. |+
T Consensus 258 ~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~ 310 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE 310 (525)
T ss_dssp CCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC
T ss_pred cccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC
Confidence 45667777664311233 4489999999999999999999999999999875 54
No 166
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.87 E-value=1.2e-05 Score=92.60 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred ceEEEEEEEEee-----c-CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 457 GSIQFDNVHFSY-----L-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 457 ~~I~f~nVsF~Y-----~-~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
+.|++++...-. + +++.|++|++|++++|+.++|+|||||||||++|++.+
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 367777753221 0 24579999999999999999999999999999999863
No 167
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.83 E-value=7.5e-06 Score=81.83 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=29.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I 516 (599)
.+++|+.++|+|++|||||||++.+++... .|++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~ 59 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD 59 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC
Confidence 389999999999999999999999998664 4655
No 168
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=2.8e-06 Score=78.89 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=33.8
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~ 515 (599)
++++++|+.++|+||+|+|||||++.+++.+.|.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5778899999999999999999999999999887774
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.79 E-value=4.4e-06 Score=92.96 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=57.2
Q ss_pred CCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 471 ~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~-G~I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
...+++++++.+++|+.+.|+||+|+|||||++.|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 3468999999999999999999999999999999999999987 8888988766543 34578887654
No 170
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.75 E-value=7.3e-06 Score=88.39 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=69.7
Q ss_pred EEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeC
Q 007539 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (599)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (599)
+++++...|. +..+++++++++++| +.|+||+|+|||||++.|++... .|.|.++|.++.+.......+.+..++
T Consensus 42 ~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 42 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 3444444443 345789999999999 99999999999999999999874 789999999887766666677788888
Q ss_pred CCCC-Cch-hhHHHHh-hcC
Q 007539 540 QDTV-LFN-DTIFHNI-RYG 556 (599)
Q Consensus 540 Qd~~-LF~-gTIreNI-~~g 556 (599)
|+.. ... -.+.|+| .++
T Consensus 117 q~a~~~~p~il~IDEId~l~ 136 (499)
T 2dhr_A 117 ETAKRHAPCIVFIDEIDAVG 136 (499)
T ss_dssp TTSSSSSSCEEEEECGGGTC
T ss_pred HHHHhcCCCEEEEehHHHHH
Confidence 8874 232 3566777 343
No 171
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.74 E-value=1.1e-05 Score=81.20 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=35.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDIC 524 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G-~I~idG~di~ 524 (599)
++|+.++++|++||||||++..|++.+.|++| +|.+-+.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47999999999999999999999999998888 6666555543
No 172
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.74 E-value=5.8e-06 Score=90.68 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=48.4
Q ss_pred EEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCC
Q 007539 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (599)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd 541 (599)
+++...|. +..+++++++++ +|+.+.|+||+|+|||||++.|++...+..|+|.++|..-..--....++.+++++|.
T Consensus 87 ~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~ 164 (543)
T 3m6a_A 87 EKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGR 164 (543)
T ss_dssp HHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------C
T ss_pred HHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchH
Confidence 34444442 234678888888 8999999999999999999999999999999999888543222223344567777765
Q ss_pred C
Q 007539 542 T 542 (599)
Q Consensus 542 ~ 542 (599)
.
T Consensus 165 ~ 165 (543)
T 3m6a_A 165 I 165 (543)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.73 E-value=1.8e-06 Score=83.76 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCEeCCCCC-HHHHhhhceeeC------CCCCCc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIR--------IDGQDICEVT-LESLRKSIGVVP------QDTVLF 545 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~---gly~p~~G~I~--------idG~di~~~~-~~~lR~~i~~V~------Qd~~LF 545 (599)
+...++|+||+||||||+++.|+ |+...+.|.++ -.|++..+.. ...+.+.+.++. |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 55556667762 4577666543 556666777766 556676
Q ss_pred hhhHHHHhh
Q 007539 546 NDTIFHNIR 554 (599)
Q Consensus 546 ~gTIreNI~ 554 (599)
...|.+||+
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 667766654
No 174
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.72 E-value=1.4e-05 Score=91.01 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=53.1
Q ss_pred ceEEEEEEEEeec------CCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCHH
Q 007539 457 GSIQFDNVHFSYL------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLE 529 (599)
Q Consensus 457 ~~I~f~nVsF~Y~------~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~~~~~ 529 (599)
+.|++++. ++| +++.+++|++|+ ++|+.++|+|||||||||++|+++|+.-+ +.|. .+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 35777765 344 245799999999 99999999999999999999999997532 3332 1111
Q ss_pred HHhhhceeeCCCCCCch-hhHHHHhhcCCC
Q 007539 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGRL 558 (599)
Q Consensus 530 ~lR~~i~~V~Qd~~LF~-gTIreNI~~g~~ 558 (599)
-+..+++++| +|. -++.||+..+..
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~~s 668 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASGRS 668 (800)
T ss_dssp -SEEEECCCCE---EEEEEC----------
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhhhh
Confidence 1245777776 454 378899877643
No 175
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.72 E-value=1.6e-05 Score=83.02 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=37.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc------------CCCCCCceEEECC
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFR------------SFDTHSGSIRIDG 520 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~g------------ly~p~~G~I~idG 520 (599)
.+++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 568899999999999999999999999 6789999999987
No 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.68 E-value=1.7e-05 Score=74.77 Aligned_cols=37 Identities=38% Similarity=0.650 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-----CCC------CceEEECCEeC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF-----DTH------SGSIRIDGQDI 523 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly-----~p~------~G~I~idG~di 523 (599)
+++|+|++|||||||++.|+|.. .|+ .|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 68999999999999999999974 243 57899999765
No 177
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.68 E-value=1.4e-05 Score=77.49 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=32.5
Q ss_pred cccceeEee---CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 007539 475 LDGVSFVVP---AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (599)
Q Consensus 475 L~~isl~I~---~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (599)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 455555555 8999999999999999999999999987 6777543
No 178
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.67 E-value=5.5e-06 Score=79.14 Aligned_cols=45 Identities=29% Similarity=0.371 Sum_probs=39.9
Q ss_pred eEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCC
Q 007539 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDIC 524 (599)
Q Consensus 480 l~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~di~ 524 (599)
+.+++|+.++|+|++||||||+++.|.+.+.|..| .+.+||.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 55789999999999999999999999999988889 8999875543
No 179
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.66 E-value=1.8e-05 Score=84.47 Aligned_cols=70 Identities=26% Similarity=0.386 Sum_probs=44.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchh-hHHHH
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHN 552 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~g-TIreN 552 (599)
-++||||++|+|||||++.|+|... |.+|.+.++|.++.-++..-+++..++.+|+...|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 4799999999999999999999853 7889999999987666655556666666676665542 33445
Q ss_pred hhc
Q 007539 553 IRY 555 (599)
Q Consensus 553 I~~ 555 (599)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 180
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.64 E-value=1.7e-05 Score=72.84 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
.|+.++|+|++||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 56664
No 181
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.64 E-value=9.7e-06 Score=76.96 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=26.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
..+|..++|+|+||||||||++.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999999988763
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.63 E-value=8.6e-06 Score=83.94 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=46.1
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 5788999999999999999999999999999999999888888877665553
No 183
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.60 E-value=5.4e-05 Score=78.23 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=31.2
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
.++++++++++| .++|+||||||||||++.|.+
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578999999999 999999999999999999986
No 184
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.57 E-value=1.5e-05 Score=87.01 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=58.8
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC----------------------C-C----
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS----------------------F-D---- 510 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl----------------------y-~---- 510 (599)
.|+++|+ ..++++++++.+| ..+|+|++|||||||+..|..+ + +
T Consensus 42 ~L~i~nf--------~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~ 112 (517)
T 4ad8_A 42 RLEIRNL--------ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDES 112 (517)
T ss_dssp EEEEESB--------TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC------
T ss_pred eeecccc--------cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCC
Confidence 4666663 2567899999999 9999999999999999999544 4 2
Q ss_pred -----------CCCceEEECCEeCCCCCHHHHhhh-ceeeCCCCCCc
Q 007539 511 -----------THSGSIRIDGQDICEVTLESLRKS-IGVVPQDTVLF 545 (599)
Q Consensus 511 -----------p~~G~I~idG~di~~~~~~~lR~~-i~~V~Qd~~LF 545 (599)
...+.+++||.+++.-++.++-.. +.+++|+..++
T Consensus 113 ~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~ 159 (517)
T 4ad8_A 113 EADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVS 159 (517)
T ss_dssp --CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTTEEEESGGGGGT
T ss_pred CeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhhheEEeCCchHHh
Confidence 336789999988765444554444 68889986544
No 185
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.55 E-value=2.8e-05 Score=82.75 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=39.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G 514 (599)
.|+++|+ .+|.+. + .+++.+|+.++|+||||||||||++.|.++..|.++
T Consensus 6 ~l~~~~~-~~~~~~----~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRGV----T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCSE----E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECCc----e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 6888888 577421 1 356788999999999999999999999999888663
No 186
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.52 E-value=4.1e-06 Score=79.12 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=38.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc------CCCCCCceEEECCE--eCCCCCH--------HHHhhhceeeCCCCCCchhhHH
Q 007539 487 SVAIVGTSGSGKSTILRLLFR------SFDTHSGSIRIDGQ--DICEVTL--------ESLRKSIGVVPQDTVLFNDTIF 550 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g------ly~p~~G~I~idG~--di~~~~~--------~~lR~~i~~V~Qd~~LF~gTIr 550 (599)
.++|+|++||||||++++|.. +.+|..|...++.. +-...+. +.++.....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 34454443322211 1000110 0123334566777788888888
Q ss_pred HHhhc
Q 007539 551 HNIRY 555 (599)
Q Consensus 551 eNI~~ 555 (599)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77665
No 187
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.49 E-value=5.6e-06 Score=78.17 Aligned_cols=33 Identities=36% Similarity=0.376 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d 522 (599)
...++|+|++||||||+.++|... |...+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 457999999999999999999985 777776543
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.44 E-value=3.1e-05 Score=79.96 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=36.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
+++.+++|+|++|||||||++.|+|.+.|..|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 457899999999999999999999999899999888776654
No 189
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.44 E-value=7.4e-05 Score=69.76 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=29.9
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc----CCCC----CCceEEECCEeC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SFDT----HSGSIRIDGQDI 523 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g----ly~p----~~G~I~idG~di 523 (599)
.++++++++.++. +++++|++|+|||||++.+.+ .|.| +.+.+.++|..+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 3788999988777 889999999999999999987 3333 456677787544
No 190
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.42 E-value=2e-05 Score=76.73 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=44.5
Q ss_pred CCcccccc-eeEeeCCCEEEEEcCCCCcHHHHH-HHHhcCCCCCCceEEECCEeCCCCCHHHHh---hhceeeCCC
Q 007539 471 ERKILDGV-SFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTHSGSIRIDGQDICEVTLESLR---KSIGVVPQD 541 (599)
Q Consensus 471 ~~~vL~~i-sl~I~~G~~vaIVG~SGSGKSTL~-~LL~gly~p~~G~I~idG~di~~~~~~~lR---~~i~~V~Qd 541 (599)
+-+.|+++ .--+++|+.+.|+|++|||||||+ +++....++..+.+++++.. +.+.++ ..+++.+|+
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~ 79 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKP 79 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHH
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHH
Confidence 33456665 667999999999999999999995 45555555555556666532 333332 345666654
No 191
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.41 E-value=8.7e-05 Score=68.09 Aligned_cols=41 Identities=32% Similarity=0.448 Sum_probs=31.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC------------CCceEEECCEeC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT------------HSGSIRIDGQDI 523 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p------------~~G~I~idG~di 523 (599)
++|.+++|||++|+|||||++.|.+...+ ..+.+.++|.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999986421 236777887643
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.41 E-value=4.7e-05 Score=80.30 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=49.4
Q ss_pred EEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 007539 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (599)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~ 527 (599)
.++++..|.+.. ++++|+ +|+.++++|++||||||++..|++.+.+..|+|.+.+.|...-.
T Consensus 79 ~~~L~~~~~~~~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~a 140 (425)
T 2ffh_A 79 YEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140 (425)
T ss_dssp HHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHH
T ss_pred HHHHHHHhCCCc---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCch
Confidence 334444554322 567777 89999999999999999999999999999999999888776543
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.38 E-value=7.4e-05 Score=77.47 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=35.2
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEEC
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRID 519 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g--ly~p~~G~I~id 519 (599)
..+|+++++++| .|+|||++|||||||++.|.| +.++.+|.+.-.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 358999999999 999999999999999999999 777777776533
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=1.1e-05 Score=83.18 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=54.2
Q ss_pred CcccccceeEeeCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC-CCHHHHhhhceeeCC
Q 007539 472 RKILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-VTLESLRKSIGVVPQ 540 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~--vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~-~~~~~lR~~i~~V~Q 540 (599)
..+++.++..++.|+. +.+.||+|+||||+++.+++...+..+.+.+.+.+..+ ...+.+|+.+..++|
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 4588999999999998 99999999999999999999988877776655555443 345667766655444
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.33 E-value=7.1e-05 Score=77.08 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=48.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCEeCCCCCHHHHhhhceeeCCCCCCc
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQDICEVTLESLRKSIGVVPQDTVLF 545 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I-~idG~di~~~~~~~lR~~i~~V~Qd~~LF 545 (599)
=+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. ...+.+++++.+|+..+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l~i~ 119 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSLLIS 119 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGCEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhhhhh
Confidence 489999999999999999999999999888888876 67664332 233566788888775544
No 196
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.00011 Score=68.40 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=26.6
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999875
No 197
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.30 E-value=9.6e-05 Score=76.63 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------CCCceEEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFD-----------THSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~-----------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
+++|||++|+|||||++.|+|... |+.|.|.++|.++. +.+..|++.|.|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp 241 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIP 241 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCC
Confidence 399999999999999999999875 67899999997652 233566666644
No 198
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.28 E-value=0.00011 Score=76.27 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=28.5
Q ss_pred cccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
++++++++++| .++|+||||||||||+..|+
T Consensus 14 ~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 56789999999 88899999999999999987
No 199
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.26 E-value=4.5e-05 Score=76.83 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=42.8
Q ss_pred ceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 478 isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
++++.+ |+.++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 777776 999999999999999999999999999999999888776543
No 200
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.26 E-value=0.00013 Score=83.23 Aligned_cols=40 Identities=35% Similarity=0.528 Sum_probs=35.3
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
..|++++.. ..=|||||++||.|+.|+|.|.||||||||+
T Consensus 14 ~~I~i~gar------~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 14 GFVQVRGAR------QHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TEEEEEEEC------STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CeEEEeecc------ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 368888763 3459999999999999999999999999998
No 201
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.15 E-value=0.00017 Score=77.61 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=47.0
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEECCEeCCCCCHHHHh
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLR 532 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g--ly~p~~G~I~idG~di~~~~~~~lR 532 (599)
.+++++.++..+.|+|+|||||||+++.|.. ++.++.|++.+.++|.+...+..+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~ 216 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE 216 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc
Confidence 3778889999999999999999999998876 6777889998888888776555543
No 202
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.14 E-value=0.00019 Score=82.18 Aligned_cols=39 Identities=33% Similarity=0.542 Sum_probs=34.1
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
.|++++.. ..=|||||++||+++.|+|.|.||||||||+
T Consensus 23 ~I~i~gar------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 23 KIIVKGAR------AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EEEEEEEC------SSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred eEEEeccc------cccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 57777652 3459999999999999999999999999997
No 203
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.13 E-value=0.0002 Score=82.42 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=34.0
Q ss_pred eEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
.|++++.. ..=|||||++||+++.|+|.|.||||||||+
T Consensus 25 ~I~i~gar------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 25 RLIVKGAR------EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EEEEEEEC------SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cEEEeccc------ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 57777642 3459999999999999999999999999997
No 204
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.12 E-value=0.00014 Score=67.58 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=35.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCEe
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQD 522 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I-~idG~d 522 (599)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 456899999999999999999999999888777776 566543
No 205
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.11 E-value=0.00012 Score=69.06 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di 523 (599)
...++|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999998866 5666765444
No 206
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.08 E-value=0.00013 Score=71.59 Aligned_cols=43 Identities=28% Similarity=0.446 Sum_probs=35.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (599)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+|+-.++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456788999999999999999999998774 3678888866543
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.08 E-value=0.0003 Score=63.15 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=23.4
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
+..+++.+| ..+|+||+|||||||+..|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555555 88999999999999999875
No 208
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.08 E-value=0.00019 Score=82.51 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=28.7
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHH
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~ 502 (599)
.=|||||++||+++.|+|.|.||||||||+
T Consensus 12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 469999999999999999999999999998
No 209
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.05 E-value=0.00027 Score=66.78 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
.++|+|++||||||++++|.++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 6899999999999999999983 6666664
No 210
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.03 E-value=6.1e-05 Score=78.14 Aligned_cols=51 Identities=29% Similarity=0.444 Sum_probs=36.1
Q ss_pred ceEEEEEEEEeecCCCcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 007539 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (599)
Q Consensus 457 ~~I~f~nVsF~Y~~~~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G 514 (599)
+.|.|+|++..|. .+.++++++|+| +|||++|+|||||++.|++...+..|
T Consensus 16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 5788999988875 346889999877 99999999999999999887544444
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.00033 Score=72.93 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=34.8
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCceEEECCE
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS-----------FDTHSGSIRIDGQ 521 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gl-----------y~p~~G~I~idG~ 521 (599)
.++.|.+++|||++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4678899999999999999999999998 7788898887763
No 212
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.97 E-value=0.00062 Score=61.67 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
-+++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 213
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.96 E-value=0.00029 Score=64.99 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCEeC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDI 523 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di 523 (599)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 3679999999999999999999876543 37788877553
No 214
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.96 E-value=8.5e-05 Score=85.17 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=48.4
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCC
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~ 542 (599)
++.+++|+.+.|+||+|||||||+++|++.+.+. -+.+++.++......+..+.+..+.|++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEA 293 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHH
Confidence 3478999999999999999999999999987543 4778887776655555566666666654
No 215
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.90 E-value=0.00034 Score=65.18 Aligned_cols=45 Identities=33% Similarity=0.697 Sum_probs=33.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC-------------CCCCceEEECCEeCCCCCHHHHhhh
Q 007539 488 VAIVGTSGSGKSTILRLLFRSF-------------DTHSGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 488 vaIVG~SGSGKSTL~~LL~gly-------------~p~~G~I~idG~di~~~~~~~lR~~ 534 (599)
+.|+||||||||||++-|+.-+ +|-.|+ .||+|..=++.++..+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHH
Confidence 7899999999999999886433 345666 47887777777666554
No 216
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.90 E-value=0.00017 Score=70.86 Aligned_cols=48 Identities=25% Similarity=0.469 Sum_probs=33.5
Q ss_pred cccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 007539 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (599)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~ 526 (599)
++++++..++| +.|+||+|+|||||++.|++.+... -+.+++.++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~ 84 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEM 84 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHH
Confidence 34444555555 9999999999999999999987532 477888776543
No 217
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.90 E-value=0.00049 Score=63.53 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=29.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCceEEECCEe
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS-----------FDTHSGSIRIDGQD 522 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl-----------y~p~~G~I~idG~d 522 (599)
-+++++|++|+|||||++.|++- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999983 23456677777654
No 218
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.83 E-value=0.00056 Score=63.19 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++|||++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999964
No 219
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.80 E-value=0.00061 Score=64.16 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
No 220
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.77 E-value=0.00068 Score=71.01 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=40.7
Q ss_pred EEEeec-CCCcccccceeEe---eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 007539 464 VHFSYL-TERKILDGVSFVV---PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (599)
Q Consensus 464 VsF~Y~-~~~~vL~~isl~I---~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (599)
+-+.+. .+.|++-|+ +.. ..+..++|+|+|||||||+++.|+..+.+..+.|.+-
T Consensus 11 ~~~G~~~~g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 11 IVLGKDRDGGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp EEEEECTTSCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEeCCCCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 334453 244666555 222 2678899999999999999999998888888888774
No 221
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.73 E-value=0.00032 Score=71.74 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=33.8
Q ss_pred cccccceeEeeCCCE--EEEEcCCCCcHHHHHHHHhcCC
Q 007539 473 KILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 473 ~vL~~isl~I~~G~~--vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+++.+++.+++|+. ++|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998854
No 222
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.72 E-value=0.00033 Score=72.59 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=42.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhhceeeCCCCCCchhhHHHHhhcCCCCCCHHHHH
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY 566 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNI~~g~~~~sdeei~ 566 (599)
+++|||++|+|||||++.|.+.. + ++.+++.. |+..|+... .++++++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~--~v~~~~l~ 51 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV--PLEDERLY 51 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE--ECCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE--ecChHHHH
Confidence 58999999999999999999864 3 22222222 666666554 35678888
Q ss_pred HHHHHcCchH
Q 007539 567 DAARRAAIHD 576 (599)
Q Consensus 567 ~A~~~a~l~d 576 (599)
.+++.++.++
T Consensus 52 ~~~~~~~~~~ 61 (368)
T 2dby_A 52 ALQRTFAKGE 61 (368)
T ss_dssp HHHHHHCBTT
T ss_pred HHHHHhcccc
Confidence 8888887765
No 223
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.72 E-value=0.00084 Score=61.56 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.|..+.|+|+|||||||+++.|...+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998754
No 224
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.71 E-value=0.0015 Score=60.40 Aligned_cols=37 Identities=38% Similarity=0.562 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHH-HHhcC----CCCCCc----eEEECCEeC
Q 007539 487 SVAIVGTSGSGKSTILR-LLFRS----FDTHSG----SIRIDGQDI 523 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~-LL~gl----y~p~~G----~I~idG~di 523 (599)
+++|+|++|+|||||++ ++.+. +.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 68999999999999996 45554 678877 778888543
No 225
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.67 E-value=0.00073 Score=62.47 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
.+|..++|+|++||||||+++.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 226
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.57 E-value=0.88 Score=49.76 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=10.8
Q ss_pred EEEEEEEEeecCCC
Q 007539 459 IQFDNVHFSYLTER 472 (599)
Q Consensus 459 I~f~nVsF~Y~~~~ 472 (599)
-.++||+|.-++++
T Consensus 355 ~~l~~isl~i~~G~ 368 (578)
T 4a82_A 355 PILKDINLSIEKGE 368 (578)
T ss_dssp CSEEEEEEEECTTC
T ss_pred cceeeeEEEECCCC
Confidence 46899999987554
No 227
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.56 E-value=0.0003 Score=66.68 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTH 512 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~ 512 (599)
.++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988644
No 228
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.53 E-value=0.0012 Score=60.03 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
..++|+|++||||||+++.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.53 E-value=0.0011 Score=68.31 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=41.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCEeCCCCCHHHHhhhceeeCCCCCCc
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQDICEVTLESLRKSIGVVPQDTVLF 545 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I-~idG~di~~~~~~~lR~~i~~V~Qd~~LF 545 (599)
-+++|+.+.|.|++|||||||+.-++.......|.+ +++... ..+. ...+.+++.+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLVS 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEEe
Confidence 589999999999999999999877775554444554 555532 2222 3345567666654443
No 230
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.52 E-value=0.00084 Score=68.41 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=45.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcC-CCC------CCceEEECCEeCCCCCHHHHh---hhceeeCCCCCCchhhHH
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS-FDT------HSGSIRIDGQDICEVTLESLR---KSIGVVPQDTVLFNDTIF 550 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gl-y~p------~~G~I~idG~di~~~~~~~lR---~~i~~V~Qd~~LF~gTIr 550 (599)
-+++|+.+.|.|++|||||||+.-++.- ..| ..+.++++.... ++.+.++ +.+++-+ ..+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~-------~~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDI-------DNVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCH-------HHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCH-------HHHh
Confidence 5899999999999999999999877754 334 345567766432 3344433 3344322 2356
Q ss_pred HHhhcCCC
Q 007539 551 HNIRYGRL 558 (599)
Q Consensus 551 eNI~~g~~ 558 (599)
+||.+.++
T Consensus 174 ~~l~~~~~ 181 (324)
T 2z43_A 174 NNIYYIRA 181 (324)
T ss_dssp HTEEEEEC
T ss_pred ccEEEEeC
Confidence 78877654
No 231
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.51 E-value=0.0013 Score=60.77 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+|..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.50 E-value=0.0013 Score=60.63 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999997644
No 233
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.50 E-value=0.0014 Score=61.37 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+|..++|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
No 234
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.50 E-value=0.0014 Score=60.36 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC----CCCCCc----eEEECCEeC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRS----FDTHSG----SIRIDGQDI 523 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gl----y~p~~G----~I~idG~di 523 (599)
.-+++++|++|+|||||++.+.+- +.|+.| .+.+++..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 447999999999999999999976 467778 666666543
No 235
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.44 E-value=0.0016 Score=61.45 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=22.9
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
+.++++.+ ...+|+||+||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455555 489999999999999999773
No 236
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.43 E-value=0.0016 Score=61.93 Aligned_cols=32 Identities=38% Similarity=0.387 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
++..++|+|++||||||+++.|..+ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 4568999999999999999999872 5555553
No 237
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.40 E-value=0.0017 Score=64.99 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=29.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
++|..+.|+|+|||||||+++.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987543 36777876
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.39 E-value=0.0014 Score=67.21 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=45.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCC-CC------CCceEEECCEeCCCCCHHHHhh---hceeeCCCCCCchhhHH
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF-DT------HSGSIRIDGQDICEVTLESLRK---SIGVVPQDTVLFNDTIF 550 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly-~p------~~G~I~idG~di~~~~~~~lR~---~i~~V~Qd~~LF~gTIr 550 (599)
-+++|+.+.|.|++|||||||+.-++... .| ..+.++++.... ++.+.+++ .+++-+ ..+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~-------~~~l 188 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDH-------DAVL 188 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCH-------HHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCH-------HHHH
Confidence 58999999999999999999998887642 22 345667776542 34444333 333321 2456
Q ss_pred HHhhcCCC
Q 007539 551 HNIRYGRL 558 (599)
Q Consensus 551 eNI~~g~~ 558 (599)
+|+.+.++
T Consensus 189 ~~l~~~~~ 196 (343)
T 1v5w_A 189 DNVLYARA 196 (343)
T ss_dssp HTEEEEEC
T ss_pred hceeEeec
Confidence 78876554
No 239
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.39 E-value=0.0015 Score=60.65 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999997644
No 240
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.37 E-value=0.0013 Score=60.57 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.0
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
..++..+.|+|++||||||+++.|...+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999999998443
No 241
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.36 E-value=0.0017 Score=62.77 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
=++|.+++|+|++||||||+++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
No 242
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.36 E-value=0.0011 Score=66.69 Aligned_cols=26 Identities=38% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++.++||||++|+|||||++.|+|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999863
No 243
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.34 E-value=0.0012 Score=66.52 Aligned_cols=44 Identities=36% Similarity=0.370 Sum_probs=33.8
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc----CCCCCCceEEE
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SFDTHSGSIRI 518 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g----ly~p~~G~I~i 518 (599)
.+++..+++ .|+-++|+|+||+||||++..|.+ +...+...|..
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 567777777 799999999999999999998886 44444444443
No 244
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.31 E-value=0.0023 Score=61.81 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~p~~G 514 (599)
+++|||++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665554
No 245
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.30 E-value=0.0029 Score=65.09 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------CCCCCCceEEECC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFR-----------SFDTHSGSIRIDG 520 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~g-----------ly~p~~G~I~idG 520 (599)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4478888888776
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.28 E-value=0.002 Score=58.43 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 007539 486 KSVAIVGTSGSGKSTILRLL 505 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL 505 (599)
..++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 247
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.27 E-value=0.002 Score=59.90 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++..++|+|++||||||+++.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999998644
No 248
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.26 E-value=0.0021 Score=60.57 Aligned_cols=28 Identities=36% Similarity=0.422 Sum_probs=24.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++|..++|.|++||||||+++.|...+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998643
No 249
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.21 E-value=0.0024 Score=60.38 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
.++|..++|+|++||||||+++.|...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999854
No 250
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.19 E-value=0.0024 Score=60.06 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
+|..++|.|++||||||+++.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999886653
No 251
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.16 E-value=0.0025 Score=65.26 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=24.8
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHH-hcCCCC
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLL-FRSFDT 511 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL-~gly~p 511 (599)
+..+++.+| ..+|+||+|||||||+..| .++|.+
T Consensus 16 ~~~i~f~~~-~~~i~G~NGsGKS~lleAi~~~l~~~ 50 (339)
T 3qkt_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWP 50 (339)
T ss_dssp EEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CeEEcCCCC-eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344555554 8899999999999999965 444443
No 252
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.16 E-value=0.0019 Score=59.09 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCE
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQ 521 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~ 521 (599)
..++|+|+||||||||+..|++.+.+.. |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999999988765432 45555543
No 253
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.16 E-value=0.0011 Score=61.74 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
..+++..++|+|++||||||+++.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999998754
No 254
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.0013 Score=69.31 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
++..++++|++||||||++..|++.+.+..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999999999988776654
No 255
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.15 E-value=0.0022 Score=58.75 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998754
No 256
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.11 E-value=2.1 Score=46.76 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=11.3
Q ss_pred eEEEEEEEEeecCCC
Q 007539 458 SIQFDNVHFSYLTER 472 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~ 472 (599)
.-.++|+||.-++++
T Consensus 356 ~~~l~~isl~i~~Ge 370 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGS 370 (587)
T ss_dssp CCSEEEEEEEECTTC
T ss_pred CcceeceEEEEcCCC
Confidence 346899999987554
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.02 E-value=0.0027 Score=62.19 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++|+|++|||||||++.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998643
No 258
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.99 E-value=0.0025 Score=58.60 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=18.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999997543
No 259
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.0035 Score=58.07 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999987543
No 260
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.95 E-value=0.0036 Score=57.18 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 007539 486 KSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~g 507 (599)
..+.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 261
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.94 E-value=0.0041 Score=59.25 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++|..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
No 262
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.90 E-value=0.0032 Score=58.74 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999754
No 263
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.86 E-value=0.0018 Score=69.21 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=45.6
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCCHHHHhhh
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G-~I~idG~di~~~~~~~lR~~ 534 (599)
-+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+.+. +.+.+.++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r 250 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMR 250 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHH
Confidence 3568888878999999999999999999999999988776555 5665443 3444554433
No 264
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.85 E-value=0.0024 Score=64.26 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=33.6
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d 522 (599)
++.++++..+.|.||+|+|||||++.+++... .+-+.+++.+
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~ 84 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE 84 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHH
Confidence 34578899999999999999999999998763 4556666543
No 265
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.84 E-value=0.011 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
++.-+++++|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999976
No 266
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.83 E-value=0.0049 Score=57.75 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++..+.|+|++||||||+++.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997644
No 267
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.82 E-value=0.0041 Score=57.48 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
.+.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 268
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0079 Score=53.94 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 269
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.76 E-value=0.0047 Score=59.13 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++..+.|+|++||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998544
No 270
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.76 E-value=0.0043 Score=57.14 Aligned_cols=25 Identities=44% Similarity=0.600 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+..++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999997643
No 271
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.75 E-value=0.0052 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
-+.++|.|+.||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
No 272
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.72 E-value=0.0049 Score=58.36 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++|.|++||||||+++.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
No 273
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.69 E-value=0.0049 Score=55.99 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
..+.|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997643
No 274
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.68 E-value=0.0054 Score=57.35 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
...++|+|++||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999875
No 275
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.67 E-value=0.0048 Score=58.83 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+..+.|+|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 276
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0048 Score=56.96 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+..++|+|++||||||+++.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997543
No 277
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.65 E-value=0.0055 Score=56.90 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 278
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.64 E-value=0.0058 Score=55.20 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997643
No 279
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.0088 Score=56.09 Aligned_cols=21 Identities=24% Similarity=0.670 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999997764
No 280
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.63 E-value=0.0056 Score=57.32 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+...++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999997543
No 281
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.62 E-value=0.0053 Score=57.57 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 282
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.62 E-value=0.0066 Score=61.61 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
+++..+.|+||||||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4567899999999999999999998663
No 283
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.61 E-value=0.0032 Score=63.03 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++-.++|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 284
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.59 E-value=0.0059 Score=57.86 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++|+|++||||||+++.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997544
No 285
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.59 E-value=0.006 Score=59.41 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
-+|+|||++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
No 286
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.57 E-value=0.0063 Score=59.09 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++..++|.|++||||||+++.|...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999997544
No 287
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.55 E-value=0.0059 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 288
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.54 E-value=0.009 Score=53.52 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-----CCCCc
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF-----DTHSG 514 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly-----~p~~G 514 (599)
+++++|++|+|||||++.+.+-. .|+.|
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~ 40 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG 40 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee
Confidence 68999999999999999887654 45555
No 289
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.53 E-value=0.014 Score=53.35 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=29.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc----CCCCCCc----eEEECCEe
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFR----SFDTHSG----SIRIDGQD 522 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~g----ly~p~~G----~I~idG~d 522 (599)
++.=+++++|++|+|||||++-+.+ -+.|+-| .+.+++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 63 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFK 63 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEE
Confidence 4556899999999999999999986 3455555 34455543
No 290
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.52 E-value=0.0062 Score=54.47 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 291
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.48 E-value=0.0071 Score=55.88 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 292
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.45 E-value=0.0077 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 293
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.42 E-value=0.0079 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997543
No 294
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.42 E-value=0.0066 Score=60.02 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|||++|+|||||++.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 295
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.42 E-value=0.0072 Score=58.94 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
..|+|.|++||||||+.+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 296
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.40 E-value=0.0078 Score=58.98 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------CCCceEEECCE
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFD-----------THSGSIRIDGQ 521 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~-----------p~~G~I~idG~ 521 (599)
+++++|.+|||||||++.|.|-.. ...|.+.++|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~ 48 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH 48 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe
Confidence 799999999999999999998742 23456666664
No 297
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.40 E-value=0.0097 Score=54.93 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|+|++|+|||||++.|.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999886
No 298
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.39 E-value=0.0075 Score=53.70 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 299
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.0076 Score=55.58 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+.-+++++|++|+|||||++.|.+-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34489999999999999999998754
No 300
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.34 E-value=0.011 Score=55.11 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=27.0
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
.++..-+++ .|..+.|+|+||||||||+.-|+.-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 455554444 6889999999999999999888753
No 301
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.34 E-value=0.0081 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 302
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.33 E-value=0.0075 Score=59.50 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 789999999999999999998753
No 303
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.33 E-value=0.01 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
=+++|+|++|+|||||++.|++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 304
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.33 E-value=0.0062 Score=58.70 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
.+.+|+.+.++|+|||||||++.+++
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 35679999999999999999887664
No 305
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.32 E-value=0.008 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 306
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.32 E-value=0.0074 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 307
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.30 E-value=0.0052 Score=65.73 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=30.3
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
..++++++.+++| +.|+||+|+|||||++.+++..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 4567788888888 8999999999999999999854
No 308
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.29 E-value=0.0088 Score=58.68 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++..+.|+|++||||||+++.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999865
No 309
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.29 E-value=0.0083 Score=53.57 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.28 E-value=0.0085 Score=53.74 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988754
No 311
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.28 E-value=0.015 Score=54.21 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCCc------eEEECCE
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS-----FDTHSG------SIRIDGQ 521 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl-----y~p~~G------~I~idG~ 521 (599)
+++|+|++|+|||||++.|.+- +.|+.| .+.++|.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 55 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 55 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE
Confidence 6899999999999999998753 345444 4556664
No 312
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.28 E-value=0.0079 Score=59.78 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 313
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.26 E-value=0.008 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 314
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.25 E-value=0.0093 Score=54.05 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 315
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.24 E-value=0.0087 Score=56.85 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+|..+.|+|+.||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997654
No 316
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.23 E-value=0.0089 Score=53.47 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988864
No 317
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.22 E-value=0.0091 Score=54.02 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 318
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.21 E-value=0.0093 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
+++|+|++|+|||||++.+.+-+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999998654
No 319
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.21 E-value=0.0091 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999888653
No 320
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.21 E-value=0.0085 Score=55.29 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
.--+++++|++|+|||||++.|++-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 321
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.21 E-value=0.013 Score=53.69 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCCc
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS-----FDTHSG 514 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl-----y~p~~G 514 (599)
+++++|++|+|||||++.+.+- |.|+.|
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~ 41 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc
Confidence 6899999999999999988764 445554
No 322
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.20 E-value=0.0086 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+++-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988764
No 323
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.14 E-value=4.8 Score=44.05 Aligned_cols=11 Identities=9% Similarity=0.307 Sum_probs=7.7
Q ss_pred EEEEEEEeecC
Q 007539 460 QFDNVHFSYLT 470 (599)
Q Consensus 460 ~f~nVsF~Y~~ 470 (599)
.++||+|.-++
T Consensus 370 ~l~~isl~i~~ 380 (598)
T 3qf4_B 370 VLKDITFHIKP 380 (598)
T ss_dssp SCCSEEEECCT
T ss_pred cccceEEEEcC
Confidence 46788887653
No 324
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.13 E-value=0.0093 Score=54.83 Aligned_cols=24 Identities=46% Similarity=0.618 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
-+++++|++|+|||||++.+++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998753
No 325
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.13 E-value=0.01 Score=53.14 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 326
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.08 E-value=0.011 Score=58.48 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
-+++++|++|+|||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999853
No 327
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.07 E-value=0.011 Score=54.17 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999753
No 328
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.06 E-value=0.0088 Score=59.95 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE-EECCEe
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQD 522 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I-~idG~d 522 (599)
...+.|+||+|+||||+++.|.+...+..|.+ .+|..+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 35789999999999999999999988777754 454433
No 329
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.03 E-value=0.018 Score=52.27 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR-----SFDTHSG 514 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g-----ly~p~~G 514 (599)
+++|+|++|+|||||++-+.+ -++|+.|
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~ 40 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCcc
Confidence 789999999999999998872 3455555
No 330
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.01 E-value=0.011 Score=54.26 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998875
No 331
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.01 E-value=0.011 Score=54.20 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 332
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.01 E-value=0.012 Score=58.90 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+..++|+||||||||||+.-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5578999999999999999998655
No 333
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.01 E-value=0.013 Score=53.11 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 334
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.99 E-value=0.011 Score=52.57 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 335
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.97 E-value=0.017 Score=53.40 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=24.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc------CCCCCCc
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFR------SFDTHSG 514 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~g------ly~p~~G 514 (599)
.-+++|+|++|+|||||++-+++ -|.|+-|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 34789999999999999999987 4566666
No 336
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.95 E-value=0.021 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998874
No 337
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.016 Score=53.53 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR-----SFDTHSG 514 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g-----ly~p~~G 514 (599)
+++|+|++|+|||||++.+.+ -+.|+.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 57 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 689999999999999998875 3456666
No 338
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.93 E-value=0.0099 Score=56.34 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999997743
No 339
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.93 E-value=0.012 Score=55.76 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997644
No 340
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.012 Score=53.33 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 341
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.92 E-value=0.012 Score=52.73 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC----CCCCCc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRS----FDTHSG 514 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gl----y~p~~G 514 (599)
+.-+++++|++|+|||||++-+.+- +.|+-|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 40 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG 40 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc
Confidence 3457999999999999999998652 455555
No 342
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.91 E-value=0.011 Score=53.32 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++-+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999874
No 343
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.91 E-value=0.013 Score=58.94 Aligned_cols=22 Identities=50% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999985
No 344
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.019 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 007539 486 KSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~g 507 (599)
=+++|+|++|+|||||++.|.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999976
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.90 E-value=0.015 Score=55.86 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+..+.|+|+.||||||+++.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998654
No 346
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.86 E-value=0.0074 Score=63.93 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=34.5
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i 518 (599)
+++.+ ..+-+|++++|+|+||+|||||++.|++-.....|.|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 45555 678899999999999999999999998766544455543
No 347
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.85 E-value=0.013 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 348
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.85 E-value=0.013 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++-|++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988754
No 349
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.85 E-value=0.013 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+++-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988764
No 350
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.83 E-value=0.014 Score=61.44 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=30.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (599)
.=++.+.+.|+|++||||||+++.|+.-+ |-+.+|.-+++
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~ 293 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDTLG 293 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGGSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccchHH
Confidence 34567899999999999999999998643 55666654443
No 351
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.83 E-value=0.013 Score=57.18 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
-+|+|+|++|+|||||++.|++-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998743
No 352
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.82 E-value=0.013 Score=59.49 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
..++|+||||||||||++.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999887653
No 353
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.82 E-value=0.0019 Score=74.04 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=38.7
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (599)
..++.+++|+.+.++||+|+|||||++.|++... .+-+.+++.++.+
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 3467789999999999999999999999999874 4567777766543
No 354
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.82 E-value=0.013 Score=56.28 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
.+|..+.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999876553
No 355
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.79 E-value=0.019 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999865
No 356
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.79 E-value=0.014 Score=53.18 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++-|++
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999875
No 357
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.78 E-value=0.015 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997644
No 358
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.77 E-value=0.015 Score=60.21 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=24.9
Q ss_pred ccceeEeeCCCEEEEEcCCCCcHHHHHHHHh
Q 007539 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (599)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~ 506 (599)
++..+++.+ ..++|+|+||||||||+..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 556667666 589999999999999998775
No 359
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.75 E-value=0.015 Score=55.28 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=26.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999887764
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.72 E-value=0.016 Score=55.01 Aligned_cols=28 Identities=32% Similarity=0.384 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
-+|..++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999976554
No 361
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.71 E-value=0.02 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 007539 486 KSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~g 507 (599)
=+++|+|++|+|||||++.+.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999984
No 362
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.70 E-value=0.015 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988754
No 363
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.69 E-value=0.013 Score=55.92 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++..+.|+||+|+||||+++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 364
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.69 E-value=0.011 Score=53.94 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999884
No 365
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.69 E-value=0.017 Score=53.94 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I 516 (599)
..+.|.||+|+|||||++.++.........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 7899999999999999999998776544444
No 366
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.69 E-value=0.014 Score=53.28 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 367
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.68 E-value=0.015 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.|.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998764
No 368
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.66 E-value=0.015 Score=53.86 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999985
No 369
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.65 E-value=0.016 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 370
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.65 E-value=0.024 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999998864
No 371
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.64 E-value=0.016 Score=58.34 Aligned_cols=22 Identities=50% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+|||+|++|+|||||++.|+|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999985
No 372
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.64 E-value=0.015 Score=53.96 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|+|++|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999874
No 373
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.63 E-value=0.017 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
-+++|+|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 374
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.63 E-value=0.0092 Score=56.49 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.-+++|+|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998864
No 375
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.62 E-value=0.02 Score=50.61 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=28.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (599)
+.+.-+-|.|++|+|||++++.|........+...+|.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~ 59 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEEC
Confidence 45667899999999999999999887644444333433
No 376
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.62 E-value=0.017 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 377
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.62 E-value=0.016 Score=53.22 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998874
No 378
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.60 E-value=0.018 Score=55.54 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999977654
No 379
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.59 E-value=0.018 Score=54.99 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
.+|..++|.|.+||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999976543
No 380
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.57 E-value=0.019 Score=54.47 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
+|..|.+.|++||||||+++.|...++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987664
No 381
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.57 E-value=0.015 Score=54.09 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
.=+++|+|++|+|||||++.+.+-
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 447999999999999999998864
No 382
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.55 E-value=0.012 Score=57.60 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+++..|+|.|..||||||+++.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999999998766
No 383
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.55 E-value=0.018 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
-+++++|++|+|||||++.+.+-+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998854
No 384
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.53 E-value=0.017 Score=54.46 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999888754
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.50 E-value=0.018 Score=52.44 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988863
No 386
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.50 E-value=0.024 Score=51.60 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
---.|.-+.|.|+||+||||++..|..
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 334689999999999999999987754
No 387
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.49 E-value=0.018 Score=56.99 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 388
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.49 E-value=0.023 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.|.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998863
No 389
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.017 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999988863
No 390
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.46 E-value=0.021 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
+-=+++++|++|+|||||++.+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998875
No 391
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.46 E-value=0.017 Score=58.29 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
..+.|+||||||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998765
No 392
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.45 E-value=0.018 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 393
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.45 E-value=0.019 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 394
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.0099 Score=55.73 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=23.6
Q ss_pred cccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 475 L~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
..|+.|.-.+--+++++|++|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3344443333458999999999999999998863
No 395
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.43 E-value=0.019 Score=55.38 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+|..++|.|..||||||+++.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998765
No 396
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.39 E-value=0.016 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998654
No 397
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.39 E-value=0.021 Score=57.09 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
...+.|+||||||||||+.-|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998655
No 398
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.02 Score=52.48 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC----CCCCCc----eEEECCEe
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRS----FDTHSG----SIRIDGQD 522 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gl----y~p~~G----~I~idG~d 522 (599)
+.=+++++|++|+|||||++.+.+- +.|+-| .+.+++..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 61 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 61 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEE
Confidence 3457999999999999999998842 234444 55566543
No 399
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.37 E-value=7.2 Score=42.48 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=8.6
Q ss_pred EEEEEEEEeecC
Q 007539 459 IQFDNVHFSYLT 470 (599)
Q Consensus 459 I~f~nVsF~Y~~ 470 (599)
-.++|++|.-++
T Consensus 357 ~~l~~i~l~i~~ 368 (582)
T 3b5x_A 357 PALSHVSFSIPQ 368 (582)
T ss_pred cccccceEEECC
Confidence 357888888754
No 400
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.36 E-value=0.02 Score=56.14 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++++|.+|+|||||++.|++--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999754
No 401
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.35 E-value=0.022 Score=55.92 Aligned_cols=29 Identities=38% Similarity=0.468 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly~p~~G 514 (599)
.++++||.+|+|||||++.|.|-..+..|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 58999999999999999999987654444
No 402
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.34 E-value=0.022 Score=55.82 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++++|.+|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999844
No 403
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.34 E-value=0.02 Score=56.41 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++++|++|+|||||++.|++-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 404
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.34 E-value=7.3 Score=42.43 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=9.6
Q ss_pred EEEEEEEEeecCC
Q 007539 459 IQFDNVHFSYLTE 471 (599)
Q Consensus 459 I~f~nVsF~Y~~~ 471 (599)
-.++||+|.-+++
T Consensus 357 ~~l~~v~~~i~~G 369 (582)
T 3b60_A 357 PALRNINLKIPAG 369 (582)
T ss_dssp CSEEEEEEEECTT
T ss_pred ccccceeEEEcCC
Confidence 3589999987643
No 405
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.34 E-value=0.0085 Score=61.61 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=37.8
Q ss_pred eEEEEEEEEeecCCCcccc-----------cceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 458 SIQFDNVHFSYLTERKILD-----------GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~-----------~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+.|++++--||.++.-++ |.=+.|-+|++.+|+|++|+|||||++.|++-.
T Consensus 137 r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 137 RVNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 3445555444554333344 555788999999999999999999999888753
No 406
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.33 E-value=0.019 Score=59.23 Aligned_cols=38 Identities=26% Similarity=0.601 Sum_probs=30.4
Q ss_pred eCCC--EEEEEcCCCCcHHHHHHHHhcCCCCCC--ceEEECC
Q 007539 483 PAGK--SVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDG 520 (599)
Q Consensus 483 ~~G~--~vaIVG~SGSGKSTL~~LL~gly~p~~--G~I~idG 520 (599)
+++. .+.|+||+|+||||+++.+++...+.. .-+.++.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 3456 899999999999999999999887753 4455654
No 407
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.33 E-value=0.018 Score=52.55 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc----CCCCCCc----eEEECCEe
Q 007539 486 KSVAIVGTSGSGKSTILRLLFR----SFDTHSG----SIRIDGQD 522 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~g----ly~p~~G----~I~idG~d 522 (599)
=+++++|++|+|||||++-+.+ .+.|+-| .+.+++..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 66 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEE
Confidence 3689999999999999999985 3445554 35555543
No 408
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.021 Score=52.90 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC-----CCCCCce
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRS-----FDTHSGS 515 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gl-----y~p~~G~ 515 (599)
.-+++++|++|+|||||++-+.+- |.|+.|.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 63 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES 63 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCc
Confidence 347999999999999999988753 3455553
No 409
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.30 E-value=0.021 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+-=+++|+|++|+|||||++.+++-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999988753
No 410
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.29 E-value=0.02 Score=54.49 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=25.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+.++.+.+.|.||.||||+|.++.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999998765
No 411
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.29 E-value=0.021 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
.=+++|+|++|+|||||++.+++
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999998874
No 412
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.28 E-value=0.021 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
-+++++|++|+|||||++.|.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999998753
No 413
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.27 E-value=0.022 Score=53.73 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999999986
No 414
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.27 E-value=0.024 Score=51.64 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
+.+..+.|+|++|+||||+++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999887653
No 415
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.26 E-value=0.02 Score=57.46 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++|||++|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 416
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.25 E-value=0.021 Score=57.02 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 007539 486 KSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~g 507 (599)
..+.|+|++||||||+++.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 417
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.25 E-value=0.024 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.|.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 418
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.20 E-value=0.025 Score=52.48 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC-----CCCCCc-----eEEECCE
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRS-----FDTHSG-----SIRIDGQ 521 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gl-----y~p~~G-----~I~idG~ 521 (599)
.=+++++|++|+|||||++.+.+- |.|+.| .+.++|.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGR 66 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCE
Confidence 447999999999999999988753 345554 3445664
No 419
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.20 E-value=0.021 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
-+++|+|++|+|||||++-|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999888764
No 420
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.19 E-value=0.023 Score=52.26 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCce
Q 007539 487 SVAIVGTSGSGKSTILRLLFR-----SFDTHSGS 515 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g-----ly~p~~G~ 515 (599)
+++++|++|+|||||++-+.+ -|.|+-|.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 689999999999999987764 24566553
No 421
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.19 E-value=0.024 Score=58.33 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.-++++||++|+|||||++.|++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999865
No 422
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.16 E-value=0.017 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 007539 486 KSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~g 507 (599)
=+++++|++|+|||||++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999998875
No 423
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.16 E-value=0.021 Score=56.82 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
-+++|||++|+|||||++.|+|--
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999864
No 424
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.15 E-value=0.014 Score=59.99 Aligned_cols=39 Identities=15% Similarity=0.428 Sum_probs=31.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCC----CceEEECCE
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTH----SGSIRIDGQ 521 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~----~G~I~idG~ 521 (599)
+++..+.|.||+|+|||||++.+++...+. ...+.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 568899999999999999999999887653 345566643
No 425
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.026 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
-+++|||++|+|||||++-+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999864
No 426
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.09 E-value=0.017 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=9.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 427
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.08 E-value=0.025 Score=56.90 Aligned_cols=26 Identities=38% Similarity=0.801 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++-+++++|++|+|||||++.+.+-
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998765
No 428
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.08 E-value=0.022 Score=52.97 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++++|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999976
No 429
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.08 E-value=0.024 Score=52.43 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=25.3
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
++++.+. -++.-+++++|++|+|||||++-+.+
T Consensus 19 ~~~~~~~--~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 19 SLFSRIF--GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CGGGGTT--TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHHHHhc--cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 4555432 24556899999999999999999865
No 430
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.04 E-value=0.027 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++..+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
No 431
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.00 E-value=0.022 Score=60.68 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
-+|+|||++|+|||||++.|+|-
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999884
No 432
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.00 E-value=0.033 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
--+++++|++|+|||||++-+.+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999998875
No 433
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.91 E-value=0.036 Score=52.28 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC-----CCCCCce
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS-----FDTHSGS 515 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl-----y~p~~G~ 515 (599)
=+++|+|++|+|||||++-+.+- |.|+-|.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~ 62 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE 62 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeee
Confidence 47999999999999999988753 3455544
No 434
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.91 E-value=0.015 Score=54.73 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|+|++|+|||||++.|++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998884
No 435
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.84 E-value=0.028 Score=58.34 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
...++|+||||||||||+.-|+.-+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999887654
No 436
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.027 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 437
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.67 E-value=0.021 Score=57.66 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
++..+.|.||+|+|||||++.+++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 457899999999999999999988664
No 438
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.66 E-value=0.023 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
+.=+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 455799999999999999999864
No 439
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.64 E-value=0.026 Score=52.77 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc-----CCCCCCce
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFR-----SFDTHSGS 515 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~g-----ly~p~~G~ 515 (599)
+.=+++++|++|+|||||++.+.+ -+.|+.|.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~ 65 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD 65 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc
Confidence 345799999999999999977763 44455443
No 440
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.62 E-value=0.03 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
-+++|+|.+|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999877754
No 441
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.57 E-value=0.033 Score=59.89 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=25.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
+.|..+.++|.|||||||+.++|+.-+.-
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999887754
No 442
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.56 E-value=0.032 Score=51.95 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
+++|+|++|+|||||++-+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 689999999999999998864
No 443
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.53 E-value=0.029 Score=50.90 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
+.+..+.|+|++|+||||+++.++.....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44677899999999999999999876643
No 444
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.47 E-value=0.038 Score=54.47 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=25.0
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++++..+.|.||+|+|||||++.+++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678889999999999999999998765
No 445
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.47 E-value=0.039 Score=56.79 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
++-.++.|+|.+||||||++|-+--+|.|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~~ 59 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHGQ 59 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHSC
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44578999999999999999998444443
No 446
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.46 E-value=0.044 Score=54.34 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDT 511 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p 511 (599)
+-++++||.+|+|||||++.|.|-...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCcee
Confidence 447899999999999999999986543
No 447
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.42 E-value=0.035 Score=57.42 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
++..+++||++|+|||||+|.|.+-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 6789999999999999999999986
No 448
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.038 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.|.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 449
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.35 E-value=0.031 Score=56.40 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=30.2
Q ss_pred CcccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 472 ~~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
-+.|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345777766699999999999999999999877664
No 450
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.32 E-value=0.019 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=4.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 007539 486 KSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
=+++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999988764
No 451
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.31 E-value=0.013 Score=61.81 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d 522 (599)
...++++|++|+||||++.-|++.+.....+|.+-..|
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35899999999999999999998876554556543333
No 452
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.30 E-value=0.016 Score=56.75 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=23.3
Q ss_pred cceeEeeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 477 ~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
++....++| +.|.||+|+|||||++.+++.
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444445 889999999999999999864
No 453
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.30 E-value=0.044 Score=51.61 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
|+.|+|-|.-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 454
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.28 E-value=0.038 Score=56.79 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=35.3
Q ss_pred CCcccccceeE---eeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEECCE
Q 007539 471 ERKILDGVSFV---VPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQ 521 (599)
Q Consensus 471 ~~~vL~~isl~---I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~ 521 (599)
+-+-|+.+ +. +++|+.+.|.|++|+|||||+.-++.-.... ...+++|..
T Consensus 47 G~~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 47 GSLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SCHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 33455554 33 8999999999999999999997766543322 345567663
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.23 E-value=0.055 Score=51.90 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHH
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLL 505 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL 505 (599)
+++|+.+-|.|++|+||||++.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998543
No 456
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.14 E-value=0.035 Score=57.35 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gl 508 (599)
.++..+++||.+|+|||||+|.|++-
T Consensus 158 ~~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 158 RGGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp HTTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cccceEEEecCCCCChhHHHHHHHhh
Confidence 36889999999999999999999985
No 457
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.12 E-value=0.047 Score=55.14 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987764
No 458
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.06 E-value=0.051 Score=52.71 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++..-+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445668899999999999999998744
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.00 E-value=0.044 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 007539 486 KSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 486 ~~vaIVG~SGSGKSTL~~LL~g 507 (599)
=+++|+|++|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998874
No 460
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.93 E-value=0.056 Score=55.15 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=34.4
Q ss_pred ccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC-----------CCCCceEEECC
Q 007539 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----------DTHSGSIRIDG 520 (599)
Q Consensus 476 ~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly-----------~p~~G~I~idG 520 (599)
+.+.++++---.|+|||.+++|||||++.|.+-- .|+-|.+.+++
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~ 204 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD 204 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC
Confidence 3456666666689999999999999999998642 45667777765
No 461
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.82 E-value=0.032 Score=56.78 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=41.6
Q ss_pred cccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCHHHHhhh
Q 007539 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (599)
Q Consensus 473 ~vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~~~~~~lR~~ 534 (599)
+-|+.+.--+++|+.+.|.|++|+||||++.-++.-.....+.|.+-. + +.+.+.+...
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS--l-Ems~~ql~~R 92 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS--L-EMSAEQLALR 92 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE--S-SSCHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe--C-CCCHHHHHHH
Confidence 456666557999999999999999999999877665544555665422 1 4555555444
No 462
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.80 E-value=0.04 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+.|.||.||||+|.++.|+.-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998766
No 463
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.80 E-value=0.078 Score=56.09 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC----C--------CCCceEEECCEe
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF----D--------THSGSIRIDGQD 522 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly----~--------p~~G~I~idG~d 522 (599)
+++|||++++|||||++-|.|-- . ...|.+.++|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~ 50 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 50 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence 69999999999999999998753 2 224566677753
No 464
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.79 E-value=0.049 Score=57.37 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~i 518 (599)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999998877765555654
No 465
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.71 E-value=0.052 Score=59.41 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=28.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc---eEEECCE
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG---SIRIDGQ 521 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G---~I~idG~ 521 (599)
++|..+.|.|.+||||||+++.|...+. ..| .+.+|+-
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~-~~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN-QQGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-HHCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc-ccCCceEEEECcH
Confidence 4567899999999999999999987653 223 3566643
No 466
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.62 E-value=0.051 Score=57.49 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+|+|||++|+|||||++-|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999884
No 467
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.60 E-value=0.057 Score=59.42 Aligned_cols=39 Identities=33% Similarity=0.493 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDI 523 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~di 523 (599)
+|..|.|+|.+||||||+++.|...+. ..| .+.+||..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~-~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV-CHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEechHHh
Confidence 467899999999999999999987552 123 455665443
No 468
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.55 E-value=0.067 Score=50.51 Aligned_cols=36 Identities=31% Similarity=0.545 Sum_probs=26.6
Q ss_pred ccccceeEeeCCC---EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 474 ILDGVSFVVPAGK---SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 474 vL~~isl~I~~G~---~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++.+.-.+..|+ .+.|+||+|+||||+++.+++.+
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444454 79999999999999999987654
No 469
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.54 E-value=0.067 Score=50.75 Aligned_cols=28 Identities=14% Similarity=0.510 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh-c----CCCCCCc
Q 007539 487 SVAIVGTSGSGKSTILRLLF-R----SFDTHSG 514 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~-g----ly~p~~G 514 (599)
+|+|||.+|+|||||++-+. + -|.|+-|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig 47 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 47 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc
Confidence 69999999999999998664 3 2466666
No 470
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.54 E-value=0.052 Score=58.07 Aligned_cols=42 Identities=26% Similarity=0.243 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC----C--------CCCceEEECCEeCCCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF----D--------THSGSIRIDGQDICEV 526 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly----~--------p~~G~I~idG~di~~~ 526 (599)
|=+|+|||++|+|||||++.|++-- . +..+.+.++|.++.=+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~li 286 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLT 286 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEE
Confidence 4459999999999999999998862 1 2234567777654433
No 471
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.47 E-value=0.037 Score=58.94 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC----CCCC--------ceEEECCEeCCCCCH
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF----DTHS--------GSIRIDGQDICEVTL 528 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly----~p~~--------G~I~idG~di~~~~~ 528 (599)
.|-+|+|||++|+|||||++.|++-- .+.. ..+.++|.++.=+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT 279 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDT 279 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEEC
Confidence 35569999999999999999998742 2222 246778876554443
No 472
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.47 E-value=0.037 Score=56.30 Aligned_cols=38 Identities=13% Similarity=0.286 Sum_probs=30.1
Q ss_pred CcccccceeEeeCC--CEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 472 RKILDGVSFVVPAG--KSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 472 ~~vL~~isl~I~~G--~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
..+++.+.-.+..| ..+.|.||+|+||||+++.+++.+
T Consensus 43 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566666666666 459999999999999999998865
No 473
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.47 E-value=0.045 Score=56.11 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++|||++|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 474
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.41 E-value=0.037 Score=52.25 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHH-HhcC----CCCCCc
Q 007539 487 SVAIVGTSGSGKSTILRL-LFRS----FDTHSG 514 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~L-L~gl----y~p~~G 514 (599)
+++++|++|+|||||++. +.+- +.|+.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~ 49 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 589999999999999997 5443 456666
No 475
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.32 E-value=0.074 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
...|+|.|+.||||||+.+.|+..+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997644
No 476
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.25 E-value=0.066 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+++|||.+++|||||++.|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999998853
No 477
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.24 E-value=0.027 Score=61.01 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
....|.+||.+||||||+.+.|++.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999998755
No 478
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.45 E-value=0.026 Score=52.58 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
+.=+++++|++|+|||||++.+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 345799999999999999977764
No 479
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.21 E-value=0.041 Score=62.60 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=26.8
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~ 513 (599)
.+..|+.+.|+|||||||||++.+++....+..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 456799999999999999999888876554443
No 480
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.20 E-value=0.019 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
+++|+|++|+|||||++.|.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 481
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.13 E-value=0.071 Score=50.28 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 007539 487 SVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~g 507 (599)
-++|+|..||||||+.++|..
T Consensus 11 ~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 482
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.06 E-value=0.081 Score=50.60 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
....||.|+.||||||+.+.|..-|
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999997655
No 483
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.02 E-value=0.094 Score=55.43 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=27.5
Q ss_pred eeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 479 sl~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
=+.|-+|++++|+|++|.|||||+.-+.+-.
T Consensus 147 l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 147 LAPYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 3588999999999999999999998887754
No 484
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.94 E-value=0.08 Score=52.78 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45668999999999999998777654
No 485
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.92 E-value=0.071 Score=49.17 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCcHHHHH-HHHhcC
Q 007539 484 AGKSVAIVGTSGSGKSTIL-RLLFRS 508 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~-~LL~gl 508 (599)
+|+.+.++|+.||||||++ +++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5889999999999999997 666544
No 486
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=91.82 E-value=0.028 Score=60.19 Aligned_cols=38 Identities=39% Similarity=0.455 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC------------CCCCceEEECCEe
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF------------DTHSGSIRIDGQD 522 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly------------~p~~G~I~idG~d 522 (599)
|=+|+|||++|+|||||++.|++-- ++..+.+.++|.+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE
Confidence 4578999999999999999998752 2345677888764
No 487
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.81 E-value=0.069 Score=54.85 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
++..+.|+||+|+||||+++.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35567899999999999999998755
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.68 E-value=0.085 Score=54.03 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=31.6
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d 522 (599)
..+|..+-|.||+|+||||+++.++........-+.+++..
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 34577899999999999999999998876444455555443
No 489
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.67 E-value=0.087 Score=52.97 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=25.2
Q ss_pred eEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 007539 480 FVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (599)
Q Consensus 480 l~I~~G~~vaIVG~SGSGKSTL~~LL~g 507 (599)
--+++|..+.|.||+|+|||||+.-++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988874
No 490
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=91.65 E-value=0.075 Score=58.14 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=26.1
Q ss_pred ccccceeEeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 474 vL~~isl~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+|.+++ ++--+|+|||++|+|||||++.|+|-.
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 455542 344678999999999999999999864
No 491
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.62 E-value=0.073 Score=54.61 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 484 ~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+.-+++|+|+.|+|||||++-|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999887665
No 492
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.53 E-value=0.063 Score=47.16 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly~ 510 (599)
+.+.-+-|.|++|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4566799999999999999999987654
No 493
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.50 E-value=0.098 Score=52.87 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.++..-+.|.||+|+|||||++.+++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566789999999999999999998755
No 494
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.43 E-value=0.082 Score=57.62 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 485 G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
--+|+|||.+|+|||||++.|+|--
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3579999999999999999999853
No 495
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.43 E-value=0.076 Score=49.79 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 481 ~I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+|+...+.|.||.|+||||++..|++++
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 37777789999999999999999999876
No 496
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=91.41 E-value=0.09 Score=59.03 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=24.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 482 I~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
.+++-+|+|||++|+|||||++.|+|--
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467789999999999999999999853
No 497
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.32 E-value=0.099 Score=55.24 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC----CC--------CceEEECCEeCCCCCHH
Q 007539 487 SVAIVGTSGSGKSTILRLLFRSFD----TH--------SGSIRIDGQDICEVTLE 529 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gly~----p~--------~G~I~idG~di~~~~~~ 529 (599)
++++||++|+|||||++.|+|-.. +. .+.+.++|..+.=+|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~ 231 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTA 231 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECC
Confidence 799999999999999999987542 22 23456677655444433
No 498
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.28 E-value=0.099 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 007539 487 SVAIVGTSGSGKSTILRLLFRS 508 (599)
Q Consensus 487 ~vaIVG~SGSGKSTL~~LL~gl 508 (599)
.+.|.||+|+||||+++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988764
No 499
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.17 E-value=0.15 Score=55.33 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=32.2
Q ss_pred ceeEeeCCCEEEEEcCCCCcHHHHHHHHh----cCCCCCCceEE-ECC
Q 007539 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF----RSFDTHSGSIR-IDG 520 (599)
Q Consensus 478 isl~I~~G~~vaIVG~SGSGKSTL~~LL~----gly~p~~G~I~-idG 520 (599)
+.+++.++-.+.|.|.||||||++++.|+ .-+.|.+-++. +|.
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDp 254 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDP 254 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECS
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCC
Confidence 55666778999999999999999998643 34567666654 454
No 500
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.12 E-value=0.11 Score=56.67 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 007539 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (599)
Q Consensus 483 ~~G~~vaIVG~SGSGKSTL~~LL~gly 509 (599)
+.|..+.++|.+||||||+++.|...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999998754
Done!