Query 007543
Match_columns 599
No_of_seqs 829 out of 3565
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 12:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4.5E-64 9.7E-69 548.4 46.3 492 68-582 85-639 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2.6E-63 5.6E-68 555.2 44.6 515 39-582 226-801 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5E-61 1.1E-65 527.0 59.8 478 49-533 384-892 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3E-60 6.5E-65 520.9 59.1 457 65-530 365-854 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 4.7E-61 1E-65 537.0 39.8 513 65-597 147-760 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-57 2.5E-62 497.9 39.2 463 104-597 89-597 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-24 7.9E-29 244.0 57.4 385 113-514 510-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.4E-23 9.5E-28 235.2 57.3 389 114-519 477-868 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.4E-20 3.1E-25 192.8 37.4 308 144-489 41-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 2.4E-20 5.2E-25 191.2 35.4 313 176-527 38-357 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 1.5E-18 3.3E-23 170.2 33.9 370 136-520 114-488 (966)
12 PRK15174 Vi polysaccharide exp 99.9 1.6E-17 3.5E-22 179.0 44.6 332 144-488 48-385 (656)
13 PRK11447 cellulose synthase su 99.9 2E-16 4.4E-21 182.2 55.1 359 145-514 276-737 (1157)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-16 3.1E-21 172.1 49.3 390 112-517 137-571 (615)
15 PRK10049 pgaA outer membrane p 99.8 1.3E-16 2.9E-21 175.6 49.3 406 97-518 10-457 (765)
16 KOG4626 O-linked N-acetylgluco 99.8 8E-18 1.7E-22 165.2 33.4 397 102-519 48-453 (966)
17 PRK11447 cellulose synthase su 99.8 4.4E-16 9.6E-21 179.4 52.4 357 113-481 280-739 (1157)
18 PRK15174 Vi polysaccharide exp 99.8 5.8E-16 1.3E-20 167.0 47.4 356 109-480 49-418 (656)
19 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-15 3.9E-20 163.7 49.7 361 108-482 166-571 (615)
20 PRK10049 pgaA outer membrane p 99.8 1.8E-15 4E-20 166.6 49.0 409 71-497 19-469 (765)
21 PRK09782 bacteriophage N4 rece 99.8 7.4E-14 1.6E-18 154.3 53.8 421 80-519 160-708 (987)
22 PRK14574 hmsH outer membrane p 99.8 1.1E-13 2.3E-18 149.9 49.2 434 72-519 37-515 (822)
23 PRK09782 bacteriophage N4 rece 99.8 2.6E-13 5.6E-18 150.0 51.0 428 66-520 74-675 (987)
24 PRK14574 hmsH outer membrane p 99.7 2.8E-12 6.1E-17 139.1 50.3 407 75-496 73-525 (822)
25 KOG2002 TPR-containing nuclear 99.7 7.5E-13 1.6E-17 137.5 38.7 402 110-520 315-748 (1018)
26 KOG4422 Uncharacterized conser 99.7 1.2E-11 2.7E-16 117.2 40.4 184 70-262 116-328 (625)
27 KOG4422 Uncharacterized conser 99.6 6.2E-11 1.4E-15 112.5 41.1 398 108-515 121-588 (625)
28 KOG2003 TPR repeat-containing 99.6 2E-12 4.4E-17 123.1 29.2 400 104-515 199-720 (840)
29 KOG2076 RNA polymerase III tra 99.6 5E-11 1.1E-15 123.4 40.1 361 146-514 147-552 (895)
30 KOG0495 HAT repeat protein [RN 99.6 1E-09 2.3E-14 109.7 45.7 372 138-528 516-891 (913)
31 PRK10747 putative protoheme IX 99.6 4.8E-11 1E-15 121.6 37.9 291 151-480 97-388 (398)
32 KOG1915 Cell cycle control pro 99.6 9E-10 2E-14 106.1 43.5 400 115-528 120-546 (677)
33 TIGR00540 hemY_coli hemY prote 99.6 3.4E-11 7.3E-16 123.4 36.2 293 149-479 95-396 (409)
34 KOG2002 TPR-containing nuclear 99.6 1.5E-10 3.2E-15 120.8 40.5 395 111-515 279-707 (1018)
35 PRK10747 putative protoheme IX 99.6 5.4E-11 1.2E-15 121.2 37.0 283 186-515 97-388 (398)
36 KOG1155 Anaphase-promoting com 99.6 1.2E-10 2.7E-15 111.8 36.1 362 137-515 163-534 (559)
37 PF13429 TPR_15: Tetratricopep 99.5 3.6E-14 7.7E-19 138.0 12.4 261 143-444 13-274 (280)
38 TIGR00540 hemY_coli hemY prote 99.5 8.1E-11 1.8E-15 120.6 36.9 286 185-514 96-396 (409)
39 PF13429 TPR_15: Tetratricopep 99.5 5.7E-14 1.2E-18 136.6 12.6 162 315-479 112-274 (280)
40 KOG1126 DNA-binding cell divis 99.5 4.6E-12 1E-16 127.1 25.5 205 310-523 418-626 (638)
41 COG2956 Predicted N-acetylgluc 99.5 5.8E-11 1.2E-15 109.0 29.9 291 186-515 48-345 (389)
42 KOG2076 RNA polymerase III tra 99.5 1.2E-09 2.6E-14 113.5 41.2 360 114-481 151-554 (895)
43 KOG2003 TPR repeat-containing 99.5 2.5E-10 5.4E-15 109.1 33.6 215 258-479 502-719 (840)
44 COG2956 Predicted N-acetylgluc 99.5 3.7E-10 8.1E-15 103.8 32.9 304 139-481 37-346 (389)
45 KOG0495 HAT repeat protein [RN 99.5 1.7E-08 3.7E-13 101.2 46.0 399 112-528 416-857 (913)
46 KOG1155 Anaphase-promoting com 99.5 2.9E-09 6.3E-14 102.6 39.0 291 181-481 235-535 (559)
47 KOG1126 DNA-binding cell divis 99.5 3.2E-11 7E-16 121.1 25.7 281 153-481 334-619 (638)
48 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.5E-14 102.8 34.2 292 151-480 97-388 (400)
49 KOG1915 Cell cycle control pro 99.4 2E-08 4.4E-13 97.0 41.6 384 115-515 86-498 (677)
50 KOG0547 Translocase of outer m 99.4 3.3E-09 7.2E-14 102.8 36.3 383 113-514 126-563 (606)
51 COG3071 HemY Uncharacterized e 99.4 1.2E-08 2.6E-13 97.0 35.1 285 186-515 97-388 (400)
52 KOG0547 Translocase of outer m 99.4 9.2E-09 2E-13 99.8 33.2 356 143-525 120-540 (606)
53 TIGR02521 type_IV_pilW type IV 99.3 1E-09 2.2E-14 103.4 26.9 200 312-515 30-230 (234)
54 PRK12370 invasion protein regu 99.3 4.5E-09 9.6E-14 112.0 32.7 162 312-480 337-500 (553)
55 TIGR02521 type_IV_pilW type IV 99.3 3.1E-09 6.7E-14 100.1 28.0 201 245-481 30-231 (234)
56 KOG1156 N-terminal acetyltrans 99.3 1.1E-07 2.3E-12 95.8 39.1 396 106-519 11-470 (700)
57 KOG1174 Anaphase-promoting com 99.3 3.6E-08 7.9E-13 93.7 33.7 304 205-520 191-503 (564)
58 KOG4318 Bicoid mRNA stability 99.3 6.7E-10 1.4E-14 114.7 22.8 81 134-226 21-101 (1088)
59 PRK12370 invasion protein regu 99.3 3.5E-09 7.6E-14 112.8 29.3 266 171-482 254-535 (553)
60 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.5E-16 84.8 6.5 50 171-220 1-50 (50)
61 KOG1129 TPR repeat-containing 99.3 1.9E-09 4.1E-14 99.2 22.2 237 243-518 220-459 (478)
62 PF12569 NARP1: NMDA receptor- 99.3 5.3E-08 1.1E-12 100.4 35.3 177 298-480 131-332 (517)
63 PF13041 PPR_2: PPR repeat fam 99.2 2.9E-11 6.3E-16 82.8 6.8 49 416-464 1-49 (50)
64 KOG1840 Kinesin light chain [C 99.2 1E-08 2.2E-13 104.4 25.7 246 173-444 199-476 (508)
65 KOG3785 Uncharacterized conser 99.2 2.6E-07 5.7E-12 86.3 32.4 384 114-522 69-495 (557)
66 PF12569 NARP1: NMDA receptor- 99.2 1.3E-07 2.7E-12 97.7 33.8 292 146-446 12-333 (517)
67 KOG1173 Anaphase-promoting com 99.2 5.7E-08 1.2E-12 96.2 28.3 284 204-498 240-532 (611)
68 KOG2047 mRNA splicing factor [ 99.2 2.4E-06 5.1E-11 86.1 39.4 385 107-514 174-612 (835)
69 KOG1173 Anaphase-promoting com 99.2 6.6E-08 1.4E-12 95.8 28.3 278 171-461 242-530 (611)
70 KOG4318 Bicoid mRNA stability 99.1 2.7E-08 5.9E-13 103.1 26.5 266 96-398 18-286 (1088)
71 KOG1840 Kinesin light chain [C 99.1 4E-08 8.6E-13 100.1 27.6 246 209-479 200-476 (508)
72 KOG1129 TPR repeat-containing 99.1 1.1E-08 2.4E-13 94.3 20.0 228 177-445 227-456 (478)
73 KOG2376 Signal recognition par 99.1 1.3E-05 2.9E-10 80.2 41.2 401 99-515 43-518 (652)
74 KOG1174 Anaphase-promoting com 99.1 5.8E-06 1.3E-10 79.1 36.9 289 186-488 209-504 (564)
75 KOG4162 Predicted calmodulin-b 99.1 4.1E-06 9E-11 86.3 37.0 375 134-516 319-782 (799)
76 PRK11189 lipoprotein NlpI; Pro 99.0 3.4E-07 7.5E-12 89.3 27.8 95 175-274 66-160 (296)
77 PRK11189 lipoprotein NlpI; Pro 99.0 3.7E-07 8.1E-12 89.1 27.6 162 313-482 98-265 (296)
78 cd05804 StaR_like StaR_like; a 99.0 4.6E-06 9.9E-11 84.3 35.1 199 138-375 6-213 (355)
79 KOG2047 mRNA splicing factor [ 99.0 3.6E-05 7.9E-10 77.8 39.4 365 140-519 140-581 (835)
80 COG3063 PilF Tfp pilus assembl 99.0 4.1E-07 8.9E-12 80.4 22.9 197 315-515 37-234 (250)
81 COG3063 PilF Tfp pilus assembl 99.0 9.6E-07 2.1E-11 78.2 25.1 198 140-375 37-234 (250)
82 KOG1156 N-terminal acetyltrans 98.9 6.5E-05 1.4E-09 76.3 40.0 381 116-513 89-507 (700)
83 cd05804 StaR_like StaR_like; a 98.9 9E-06 1.9E-10 82.2 34.3 202 313-515 114-334 (355)
84 KOG3785 Uncharacterized conser 98.9 1.2E-05 2.6E-10 75.4 30.7 381 109-514 29-454 (557)
85 KOG0548 Molecular co-chaperone 98.8 8.6E-06 1.9E-10 80.8 28.5 198 316-519 227-457 (539)
86 KOG1914 mRNA cleavage and poly 98.8 0.00012 2.7E-09 72.8 35.3 408 97-515 15-499 (656)
87 KOG2376 Signal recognition par 98.8 0.00011 2.4E-09 73.8 35.2 385 103-519 13-489 (652)
88 KOG4162 Predicted calmodulin-b 98.7 0.00038 8.2E-09 72.3 38.2 360 113-481 334-782 (799)
89 KOG4340 Uncharacterized conser 98.7 2.5E-05 5.4E-10 71.7 26.6 325 105-445 13-373 (459)
90 PRK04841 transcriptional regul 98.7 8.7E-05 1.9E-09 85.1 38.1 342 182-523 383-766 (903)
91 KOG4340 Uncharacterized conser 98.7 2.8E-05 6.1E-10 71.4 26.2 291 140-443 12-335 (459)
92 KOG3616 Selective LIM binding 98.7 6E-05 1.3E-09 77.2 31.1 162 291-479 745-908 (1636)
93 PRK04841 transcriptional regul 98.7 0.00011 2.4E-09 84.2 37.1 337 146-482 382-760 (903)
94 PF04733 Coatomer_E: Coatomer 98.7 1.2E-06 2.6E-11 84.4 17.1 127 314-445 132-263 (290)
95 KOG0624 dsRNA-activated protei 98.7 0.00025 5.3E-09 66.7 31.1 307 143-482 43-370 (504)
96 PF12854 PPR_1: PPR repeat 98.7 3.5E-08 7.5E-13 60.6 4.2 33 167-199 1-33 (34)
97 KOG3616 Selective LIM binding 98.7 4E-05 8.6E-10 78.5 28.0 139 319-479 738-876 (1636)
98 KOG0624 dsRNA-activated protei 98.7 0.00025 5.5E-09 66.6 31.0 315 172-519 37-372 (504)
99 KOG3617 WD40 and TPR repeat-co 98.6 1.2E-05 2.5E-10 83.3 23.4 328 136-514 724-1106(1416)
100 PF12854 PPR_1: PPR repeat 98.6 8.6E-08 1.9E-12 58.9 4.2 30 344-373 3-32 (34)
101 PF04733 Coatomer_E: Coatomer 98.6 6.8E-07 1.5E-11 86.0 12.5 246 217-481 10-264 (290)
102 KOG0985 Vesicle coat protein c 98.5 0.00083 1.8E-08 71.7 34.4 279 181-514 1056-1338(1666)
103 PLN02789 farnesyltranstransfer 98.5 0.00013 2.8E-09 71.3 27.5 116 312-430 141-267 (320)
104 KOG1125 TPR repeat-containing 98.5 2.1E-05 4.7E-10 78.7 21.8 257 182-474 294-563 (579)
105 KOG1128 Uncharacterized conser 98.5 8.8E-06 1.9E-10 83.5 18.9 209 213-445 403-614 (777)
106 PLN02789 farnesyltranstransfer 98.5 0.00018 3.9E-09 70.3 27.4 124 147-276 46-172 (320)
107 KOG0548 Molecular co-chaperone 98.5 0.002 4.3E-08 64.5 35.9 164 319-498 304-469 (539)
108 KOG1070 rRNA processing protei 98.5 0.0001 2.2E-09 81.0 26.8 231 243-506 1455-1689(1710)
109 KOG1127 TPR repeat-containing 98.5 0.00074 1.6E-08 72.1 31.4 362 144-513 568-992 (1238)
110 KOG1070 rRNA processing protei 98.4 0.00019 4.1E-09 78.9 27.7 239 196-475 1447-1693(1710)
111 KOG1128 Uncharacterized conser 98.4 5.9E-05 1.3E-09 77.7 22.8 235 174-429 399-634 (777)
112 KOG1125 TPR repeat-containing 98.4 3.1E-05 6.8E-10 77.6 20.2 210 297-511 338-565 (579)
113 TIGR03302 OM_YfiO outer membra 98.4 4.8E-05 1.1E-09 71.8 21.1 183 312-515 32-230 (235)
114 KOG1127 TPR repeat-containing 98.4 0.0001 2.2E-09 78.3 24.6 364 138-513 492-909 (1238)
115 TIGR03302 OM_YfiO outer membra 98.4 3.7E-05 8.1E-10 72.6 19.7 153 346-519 31-197 (235)
116 KOG0985 Vesicle coat protein c 98.4 0.00074 1.6E-08 72.0 29.9 301 172-514 983-1305(1666)
117 COG5010 TadD Flp pilus assembl 98.4 0.00011 2.5E-09 66.7 20.6 158 352-513 70-227 (257)
118 PRK10370 formate-dependent nit 98.4 8.6E-05 1.9E-09 67.5 20.3 157 319-491 22-181 (198)
119 PRK15359 type III secretion sy 98.3 3.3E-05 7.2E-10 66.3 16.1 99 386-488 27-125 (144)
120 KOG3617 WD40 and TPR repeat-co 98.3 0.00068 1.5E-08 70.7 27.3 224 114-375 740-994 (1416)
121 COG4783 Putative Zn-dependent 98.3 0.00037 8.1E-09 68.9 24.3 139 147-307 315-454 (484)
122 COG5010 TadD Flp pilus assembl 98.3 0.00015 3.2E-09 66.0 19.8 159 317-479 70-228 (257)
123 PRK10370 formate-dependent nit 98.3 5.2E-05 1.1E-09 68.9 16.2 120 151-276 52-174 (198)
124 PRK15359 type III secretion sy 98.3 7.7E-05 1.7E-09 64.1 16.3 93 141-235 27-119 (144)
125 PRK14720 transcript cleavage f 98.3 0.001 2.2E-08 72.7 28.0 84 312-412 115-198 (906)
126 PRK14720 transcript cleavage f 98.2 0.0004 8.8E-09 75.7 24.5 145 209-359 117-268 (906)
127 PRK15179 Vi polysaccharide bio 98.2 0.00074 1.6E-08 72.9 25.4 132 312-446 85-216 (694)
128 KOG2053 Mitochondrial inherita 98.2 0.016 3.4E-07 61.8 39.5 219 83-309 25-257 (932)
129 KOG3081 Vesicle coat complex C 98.2 0.00071 1.5E-08 61.6 20.8 150 354-514 114-268 (299)
130 TIGR02552 LcrH_SycD type III s 98.2 0.0001 2.2E-09 62.7 15.2 104 384-491 18-121 (135)
131 PRK15179 Vi polysaccharide bio 98.2 0.00053 1.2E-08 74.0 23.7 161 344-515 82-243 (694)
132 KOG3060 Uncharacterized conser 98.1 0.0015 3.3E-08 59.1 22.0 186 224-412 28-220 (289)
133 KOG3081 Vesicle coat complex C 98.1 0.0025 5.5E-08 58.2 23.3 153 318-481 113-270 (299)
134 COG4783 Putative Zn-dependent 98.1 0.00032 7E-09 69.3 19.1 147 322-491 315-462 (484)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.9E-09 72.7 15.9 125 141-274 172-296 (395)
136 TIGR02552 LcrH_SycD type III s 98.1 0.00025 5.5E-09 60.3 15.3 99 137-237 16-114 (135)
137 KOG3060 Uncharacterized conser 98.0 0.0073 1.6E-07 54.9 23.9 67 310-377 151-220 (289)
138 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 50.3 4.5 33 175-207 2-34 (35)
139 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.2E-10 49.2 4.0 33 174-206 2-34 (34)
140 TIGR00756 PPR pentatricopeptid 97.9 2.3E-05 4.9E-10 48.7 4.5 33 420-452 2-34 (35)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00065 1.4E-08 67.9 17.0 124 385-515 171-295 (395)
142 PF09976 TPR_21: Tetratricopep 97.9 0.0011 2.4E-08 57.1 16.5 115 326-443 24-143 (145)
143 PF09976 TPR_21: Tetratricopep 97.9 0.0013 2.7E-08 56.7 16.4 126 140-272 14-144 (145)
144 PF13812 PPR_3: Pentatricopept 97.8 3.6E-05 7.8E-10 47.4 4.5 32 420-451 3-34 (34)
145 PF10037 MRP-S27: Mitochondria 97.8 0.0009 1.9E-08 67.2 15.3 118 312-429 65-184 (429)
146 PF10037 MRP-S27: Mitochondria 97.7 0.00051 1.1E-08 68.9 13.0 124 343-466 61-186 (429)
147 KOG1914 mRNA cleavage and poly 97.7 0.074 1.6E-06 53.7 38.6 210 294-506 309-528 (656)
148 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0016 3.6E-08 53.6 14.0 97 140-236 4-104 (119)
149 PF01535 PPR: PPR repeat; Int 97.7 4.4E-05 9.4E-10 45.9 3.1 29 175-203 2-30 (31)
150 cd00189 TPR Tetratricopeptide 97.7 0.00094 2E-08 52.0 11.7 88 391-480 8-95 (100)
151 cd00189 TPR Tetratricopeptide 97.6 0.0011 2.4E-08 51.6 11.2 97 420-518 2-98 (100)
152 KOG2053 Mitochondrial inherita 97.6 0.16 3.5E-06 54.5 32.5 218 151-378 22-256 (932)
153 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.5E-08 52.1 10.3 71 358-428 35-114 (120)
154 PRK15363 pathogenicity island 97.6 0.0021 4.7E-08 54.5 12.6 94 141-236 38-131 (157)
155 PRK02603 photosystem I assembl 97.6 0.0047 1E-07 55.0 15.7 89 137-226 34-124 (172)
156 KOG0553 TPR repeat-containing 97.5 0.0011 2.5E-08 61.6 11.6 96 393-493 91-187 (304)
157 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0035 7.5E-08 51.6 13.9 102 174-276 3-106 (119)
158 PLN03088 SGT1, suppressor of 97.5 0.0025 5.4E-08 63.9 15.1 96 392-491 11-106 (356)
159 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.3E-09 44.1 3.2 29 315-343 2-30 (31)
160 PF08579 RPM2: Mitochondrial r 97.5 0.0026 5.6E-08 50.1 11.4 81 385-465 27-116 (120)
161 PF06239 ECSIT: Evolutionarily 97.5 0.0025 5.5E-08 56.7 12.3 105 345-468 44-153 (228)
162 PRK02603 photosystem I assembl 97.4 0.012 2.5E-07 52.4 16.4 96 172-271 34-131 (172)
163 CHL00033 ycf3 photosystem I as 97.4 0.0023 5.1E-08 56.7 11.8 93 138-231 35-136 (168)
164 PF05843 Suf: Suppressor of fo 97.4 0.0034 7.3E-08 60.6 13.6 131 139-275 2-136 (280)
165 PF12895 Apc3: Anaphase-promot 97.4 0.0003 6.4E-09 54.1 5.1 81 151-233 2-83 (84)
166 PF05843 Suf: Suppressor of fo 97.4 0.0052 1.1E-07 59.3 14.8 130 314-446 2-135 (280)
167 PF12895 Apc3: Anaphase-promot 97.3 0.00051 1.1E-08 52.8 5.9 81 186-271 2-83 (84)
168 PF14938 SNAP: Soluble NSF att 97.3 0.048 1E-06 52.9 20.9 25 352-376 159-183 (282)
169 PF14938 SNAP: Soluble NSF att 97.3 0.07 1.5E-06 51.7 21.9 61 421-481 158-224 (282)
170 PLN03088 SGT1, suppressor of 97.3 0.0099 2.2E-07 59.6 16.0 91 145-237 9-99 (356)
171 PF06239 ECSIT: Evolutionarily 97.3 0.0054 1.2E-07 54.7 12.2 105 380-503 44-153 (228)
172 PRK15363 pathogenicity island 97.3 0.007 1.5E-07 51.5 12.3 99 172-275 34-132 (157)
173 PRK10866 outer membrane biogen 97.3 0.17 3.8E-06 47.6 23.5 58 318-375 180-239 (243)
174 KOG2280 Vacuolar assembly/sort 97.2 0.39 8.5E-06 50.7 29.7 86 109-198 444-532 (829)
175 CHL00033 ycf3 photosystem I as 97.2 0.01 2.3E-07 52.5 13.3 115 154-272 15-139 (168)
176 PRK10866 outer membrane biogen 97.2 0.13 2.9E-06 48.3 21.2 176 319-514 38-238 (243)
177 PRK10153 DNA-binding transcrip 97.2 0.033 7.1E-07 58.5 18.7 142 345-492 334-490 (517)
178 KOG0550 Molecular chaperone (D 97.1 0.13 2.9E-06 50.3 20.2 55 146-201 57-111 (486)
179 PRK10153 DNA-binding transcrip 97.1 0.029 6.3E-07 58.9 17.5 139 378-520 332-485 (517)
180 PF12688 TPR_5: Tetratrico pep 97.0 0.037 7.9E-07 45.4 13.9 93 143-235 6-102 (120)
181 COG3898 Uncharacterized membra 97.0 0.39 8.5E-06 46.8 31.0 289 186-524 97-399 (531)
182 KOG2041 WD40 repeat protein [G 97.0 0.6 1.3E-05 48.9 29.2 78 175-269 798-875 (1189)
183 PF13432 TPR_16: Tetratricopep 97.0 0.0033 7.2E-08 45.4 6.8 58 144-202 3-60 (65)
184 KOG0553 TPR repeat-containing 96.9 0.048 1E-06 51.1 15.3 89 146-236 89-177 (304)
185 PF14559 TPR_19: Tetratricopep 96.9 0.0036 7.7E-08 45.7 6.6 51 150-201 3-53 (68)
186 KOG1130 Predicted G-alpha GTPa 96.9 0.032 6.9E-07 54.3 14.1 131 315-445 197-342 (639)
187 PF14559 TPR_19: Tetratricopep 96.9 0.0055 1.2E-07 44.7 7.1 52 325-377 3-54 (68)
188 PF13414 TPR_11: TPR repeat; P 96.9 0.0046 9.9E-08 45.3 6.7 63 418-481 3-66 (69)
189 KOG0550 Molecular chaperone (D 96.8 0.12 2.7E-06 50.5 17.6 271 181-482 57-350 (486)
190 PF13432 TPR_16: Tetratricopep 96.8 0.0053 1.2E-07 44.3 6.8 56 425-481 4-59 (65)
191 KOG1538 Uncharacterized conser 96.8 0.088 1.9E-06 54.2 17.2 38 266-303 620-657 (1081)
192 KOG1130 Predicted G-alpha GTPa 96.8 0.016 3.4E-07 56.2 11.3 273 181-481 25-343 (639)
193 PF13414 TPR_11: TPR repeat; P 96.8 0.0053 1.2E-07 44.9 6.6 62 139-201 4-66 (69)
194 PF13525 YfiO: Outer membrane 96.7 0.44 9.5E-06 43.6 20.6 47 319-367 147-197 (203)
195 PF04840 Vps16_C: Vps16, C-ter 96.7 0.65 1.4E-05 45.5 27.4 79 355-443 184-262 (319)
196 KOG2796 Uncharacterized conser 96.7 0.46 1E-05 43.7 19.3 142 350-494 179-325 (366)
197 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.74 1.6E-05 45.8 29.1 378 123-514 30-528 (660)
198 PF12688 TPR_5: Tetratrico pep 96.7 0.071 1.5E-06 43.7 13.2 89 390-480 8-102 (120)
199 COG4700 Uncharacterized protei 96.7 0.37 8E-06 42.0 18.6 94 142-235 93-187 (251)
200 COG4700 Uncharacterized protei 96.7 0.39 8.4E-06 41.8 18.7 131 345-479 86-219 (251)
201 KOG2796 Uncharacterized conser 96.6 0.1 2.3E-06 47.8 14.7 143 315-460 179-326 (366)
202 COG4235 Cytochrome c biogenesi 96.6 0.11 2.4E-06 49.0 15.4 101 380-482 153-256 (287)
203 PF13281 DUF4071: Domain of un 96.6 0.52 1.1E-05 46.7 20.7 175 99-275 138-334 (374)
204 COG4235 Cytochrome c biogenesi 96.5 0.21 4.5E-06 47.2 16.1 113 158-276 142-257 (287)
205 PRK10803 tol-pal system protei 96.4 0.094 2E-06 49.8 13.9 99 176-275 146-246 (263)
206 PRK10803 tol-pal system protei 96.4 0.068 1.5E-06 50.8 12.8 98 138-237 143-246 (263)
207 KOG2041 WD40 repeat protein [G 96.3 1.8 4E-05 45.4 23.9 64 384-447 1022-1086(1189)
208 PF13371 TPR_9: Tetratricopept 96.2 0.021 4.6E-07 42.2 6.9 58 146-204 3-60 (73)
209 PF13525 YfiO: Outer membrane 96.2 0.38 8.2E-06 44.0 16.5 45 354-400 147-195 (203)
210 PF13371 TPR_9: Tetratricopept 96.2 0.038 8.2E-07 40.8 7.9 54 427-481 4-57 (73)
211 PF13281 DUF4071: Domain of un 96.1 1.7 3.6E-05 43.2 21.0 163 318-482 146-334 (374)
212 PF12921 ATP13: Mitochondrial 96.0 0.12 2.7E-06 42.8 11.1 97 382-498 1-98 (126)
213 PF03704 BTAD: Bacterial trans 96.0 0.055 1.2E-06 46.5 9.2 70 315-385 64-138 (146)
214 PF13424 TPR_12: Tetratricopep 95.9 0.036 7.8E-07 41.6 7.0 61 420-480 7-73 (78)
215 PF03704 BTAD: Bacterial trans 95.9 0.082 1.8E-06 45.4 10.1 70 421-491 65-139 (146)
216 PF04840 Vps16_C: Vps16, C-ter 95.9 2 4.3E-05 42.2 27.6 110 384-513 178-287 (319)
217 PRK15331 chaperone protein Sic 95.8 0.35 7.5E-06 41.6 12.9 91 144-236 43-133 (165)
218 PF12921 ATP13: Mitochondrial 95.7 0.24 5.1E-06 41.1 11.3 100 347-466 1-101 (126)
219 KOG2280 Vacuolar assembly/sort 95.6 4 8.7E-05 43.5 27.5 335 143-513 442-795 (829)
220 PF13424 TPR_12: Tetratricopep 95.5 0.048 1E-06 40.9 6.3 63 210-273 7-73 (78)
221 KOG0543 FKBP-type peptidyl-pro 95.4 0.51 1.1E-05 46.4 14.2 126 144-274 214-354 (397)
222 COG0457 NrfG FOG: TPR repeat [ 95.3 2.2 4.8E-05 39.0 26.9 198 314-515 60-263 (291)
223 PF09205 DUF1955: Domain of un 95.3 1.4 2.9E-05 36.2 14.6 139 219-379 13-151 (161)
224 PF07079 DUF1347: Protein of u 95.3 3.7 8.1E-05 41.2 41.2 219 292-515 273-522 (549)
225 PRK15331 chaperone protein Sic 95.2 0.73 1.6E-05 39.7 12.9 94 177-275 41-134 (165)
226 KOG1538 Uncharacterized conser 95.2 3 6.5E-05 43.6 19.0 39 193-234 620-658 (1081)
227 PF13170 DUF4003: Protein of u 95.1 3.2 6.9E-05 40.3 18.6 23 331-353 80-102 (297)
228 KOG3941 Intermediate in Toll s 94.8 0.44 9.6E-06 44.3 11.2 117 310-445 64-186 (406)
229 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.55 1.2E-05 47.3 12.7 66 135-202 72-141 (453)
230 COG5107 RNA14 Pre-mRNA 3'-end 94.7 5.1 0.00011 40.1 29.4 147 348-500 397-547 (660)
231 PF10300 DUF3808: Protein of u 94.7 2.3 5E-05 44.4 17.8 23 252-274 311-333 (468)
232 PF10300 DUF3808: Protein of u 94.6 2.5 5.3E-05 44.2 17.8 115 362-479 247-373 (468)
233 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 1.1 2.3E-05 45.3 14.2 66 310-377 72-141 (453)
234 KOG3941 Intermediate in Toll s 94.6 0.29 6.3E-06 45.5 9.3 106 345-469 64-174 (406)
235 PF09205 DUF1955: Domain of un 94.6 2.2 4.8E-05 35.1 13.7 59 389-448 92-150 (161)
236 smart00299 CLH Clathrin heavy 94.6 2.5 5.5E-05 35.8 16.1 85 317-409 11-95 (140)
237 KOG0543 FKBP-type peptidyl-pro 94.5 2.5 5.4E-05 41.8 16.1 136 253-411 215-354 (397)
238 KOG1585 Protein required for f 94.5 3.8 8.2E-05 37.6 19.1 90 422-512 154-251 (308)
239 smart00299 CLH Clathrin heavy 94.5 2.6 5.6E-05 35.7 15.4 126 351-499 10-136 (140)
240 PRK11906 transcriptional regul 94.4 3.9 8.6E-05 41.5 17.6 111 397-513 318-432 (458)
241 KOG4555 TPR repeat-containing 94.1 1.3 2.9E-05 36.2 10.9 89 146-236 51-143 (175)
242 PF07079 DUF1347: Protein of u 94.0 7.7 0.00017 39.0 36.1 91 398-495 436-532 (549)
243 PF13512 TPR_18: Tetratricopep 93.8 3 6.4E-05 35.1 13.2 57 219-276 21-77 (142)
244 PF13170 DUF4003: Protein of u 93.7 7.2 0.00016 37.9 19.4 23 401-423 200-222 (297)
245 COG3118 Thioredoxin domain-con 93.7 6.6 0.00014 37.3 17.4 122 147-274 143-264 (304)
246 KOG4555 TPR repeat-containing 93.5 2.7 5.8E-05 34.5 11.7 91 322-413 52-145 (175)
247 KOG2610 Uncharacterized conser 93.3 2.2 4.7E-05 41.0 12.7 154 324-480 114-274 (491)
248 PF13428 TPR_14: Tetratricopep 93.3 0.28 6E-06 31.9 5.1 27 141-167 4-30 (44)
249 PF04184 ST7: ST7 protein; In 93.1 7.9 0.00017 39.6 16.9 64 418-481 259-323 (539)
250 COG1729 Uncharacterized protei 92.9 3.4 7.3E-05 38.7 13.3 95 141-236 145-243 (262)
251 PF13428 TPR_14: Tetratricopep 92.8 0.46 9.9E-06 30.9 5.7 38 175-213 3-40 (44)
252 PF04184 ST7: ST7 protein; In 92.8 13 0.00028 38.1 20.4 155 259-426 181-339 (539)
253 PF04053 Coatomer_WDAD: Coatom 92.8 3.2 6.8E-05 42.8 14.4 133 313-478 295-427 (443)
254 PF04053 Coatomer_WDAD: Coatom 92.7 2.8 6E-05 43.3 13.9 104 144-271 324-427 (443)
255 PF13512 TPR_18: Tetratricopep 92.7 3.5 7.6E-05 34.7 11.9 87 100-186 8-95 (142)
256 COG3629 DnrI DNA-binding trans 92.3 1.5 3.2E-05 41.7 10.5 75 141-216 156-235 (280)
257 COG1729 Uncharacterized protei 92.3 3.2 7E-05 38.8 12.4 98 105-202 144-244 (262)
258 PRK11906 transcriptional regul 92.3 9.8 0.00021 38.7 16.5 149 118-271 274-432 (458)
259 COG4649 Uncharacterized protei 92.2 7.1 0.00015 33.9 14.7 137 139-279 60-200 (221)
260 COG3118 Thioredoxin domain-con 92.2 11 0.00023 35.9 17.9 143 321-467 142-286 (304)
261 KOG1550 Extracellular protein 91.9 7.6 0.00016 41.6 16.6 180 294-483 228-427 (552)
262 COG1747 Uncharacterized N-term 91.7 17 0.00038 37.2 25.0 187 134-358 62-249 (711)
263 PF08631 SPO22: Meiosis protei 91.6 13 0.00029 35.7 28.0 102 314-418 85-192 (278)
264 PF07035 Mic1: Colon cancer-as 91.5 8.9 0.00019 33.4 14.3 132 369-514 15-146 (167)
265 COG3629 DnrI DNA-binding trans 91.4 2.4 5.2E-05 40.3 10.7 79 313-392 153-236 (280)
266 COG4105 ComL DNA uptake lipopr 91.3 12 0.00027 34.8 21.4 57 458-515 172-231 (254)
267 KOG2610 Uncharacterized conser 91.2 15 0.00032 35.5 18.3 153 289-444 114-273 (491)
268 KOG1941 Acetylcholine receptor 91.2 9 0.0002 37.4 14.1 17 258-274 18-34 (518)
269 PF10602 RPN7: 26S proteasome 91.0 4.9 0.00011 35.7 11.9 97 139-235 37-140 (177)
270 PF10602 RPN7: 26S proteasome 91.0 3.3 7.1E-05 36.8 10.7 96 419-514 37-139 (177)
271 KOG1941 Acetylcholine receptor 90.5 15 0.00033 35.9 15.0 130 316-445 125-273 (518)
272 KOG2114 Vacuolar assembly/sort 90.5 5.7 0.00012 43.0 13.3 175 320-518 375-552 (933)
273 COG4105 ComL DNA uptake lipopr 90.2 16 0.00034 34.1 22.0 174 99-273 31-231 (254)
274 PF13176 TPR_7: Tetratricopept 90.2 0.7 1.5E-05 28.4 4.1 23 176-198 2-24 (36)
275 KOG1920 IkappaB kinase complex 89.7 42 0.00091 38.3 22.5 116 345-480 932-1053(1265)
276 PF04097 Nic96: Nup93/Nic96; 89.5 35 0.00077 37.1 21.3 66 143-209 116-188 (613)
277 PF08631 SPO22: Meiosis protei 89.1 22 0.00048 34.2 25.9 18 149-166 4-21 (278)
278 PF13176 TPR_7: Tetratricopept 89.0 1 2.2E-05 27.7 4.3 26 248-273 1-26 (36)
279 COG4649 Uncharacterized protei 88.9 15 0.00032 32.0 17.1 132 105-236 61-195 (221)
280 PF11207 DUF2989: Protein of u 88.5 5.1 0.00011 35.8 9.7 76 190-266 123-198 (203)
281 KOG1550 Extracellular protein 88.5 39 0.00085 36.3 26.3 114 154-277 228-359 (552)
282 PF00515 TPR_1: Tetratricopept 88.4 1.1 2.4E-05 26.9 4.2 27 455-481 3-29 (34)
283 PF14432 DYW_deaminase: DYW fa 88.0 0.088 1.9E-06 42.9 -1.4 24 561-584 52-75 (116)
284 COG3947 Response regulator con 88.0 25 0.00054 33.4 15.1 59 351-410 282-340 (361)
285 KOG1258 mRNA processing protei 87.8 39 0.00085 35.5 30.1 122 347-473 296-420 (577)
286 PF07719 TPR_2: Tetratricopept 87.0 1.5 3.3E-05 26.1 4.2 27 455-481 3-29 (34)
287 PF13431 TPR_17: Tetratricopep 86.7 1.1 2.5E-05 27.1 3.4 24 243-266 10-33 (34)
288 COG3898 Uncharacterized membra 86.7 36 0.00077 33.9 34.0 282 151-448 97-393 (531)
289 PF00515 TPR_1: Tetratricopept 86.3 1.8 4E-05 25.9 4.2 27 175-201 3-29 (34)
290 PF13929 mRNA_stabil: mRNA sta 86.3 32 0.00068 32.9 16.1 63 345-407 199-262 (292)
291 PF13431 TPR_17: Tetratricopep 86.0 1 2.2E-05 27.4 2.8 22 172-193 12-33 (34)
292 PF09613 HrpB1_HrpK: Bacterial 85.6 23 0.00049 30.6 13.7 52 324-377 21-73 (160)
293 KOG1585 Protein required for f 85.5 30 0.00066 32.0 19.5 23 250-272 95-117 (308)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 85.5 5.7 0.00012 30.7 7.1 45 436-480 25-69 (103)
295 COG1747 Uncharacterized N-term 85.3 49 0.0011 34.2 21.2 196 310-513 63-265 (711)
296 KOG1920 IkappaB kinase complex 84.9 80 0.0017 36.3 29.9 146 85-235 659-819 (1265)
297 PF02259 FAT: FAT domain; Int 84.4 46 0.00099 33.1 22.5 65 312-376 145-212 (352)
298 COG0457 NrfG FOG: TPR repeat [ 84.4 30 0.00066 31.1 31.0 64 209-274 60-123 (291)
299 KOG0276 Vesicle coat complex C 84.4 11 0.00025 39.3 10.9 149 220-408 598-746 (794)
300 KOG4570 Uncharacterized conser 84.3 9.6 0.00021 36.4 9.6 48 398-445 115-162 (418)
301 PRK15180 Vi polysaccharide bio 84.3 14 0.00031 37.4 11.2 130 396-529 302-432 (831)
302 KOG4570 Uncharacterized conser 84.3 12 0.00026 35.8 10.2 101 242-343 60-165 (418)
303 KOG1586 Protein required for f 84.2 34 0.00074 31.5 16.2 22 461-482 162-183 (288)
304 PF07719 TPR_2: Tetratricopept 83.0 3.1 6.8E-05 24.7 4.2 26 176-201 4-29 (34)
305 COG2909 MalT ATP-dependent tra 82.9 83 0.0018 35.0 20.7 194 323-516 425-646 (894)
306 KOG2066 Vacuolar assembly/sort 82.9 77 0.0017 34.6 25.1 150 116-274 370-533 (846)
307 KOG2114 Vacuolar assembly/sort 82.7 82 0.0018 34.7 26.0 142 145-304 375-516 (933)
308 KOG4234 TPR repeat-containing 82.7 12 0.00026 33.3 8.9 95 390-489 102-202 (271)
309 PF13374 TPR_10: Tetratricopep 82.6 3.3 7.2E-05 26.0 4.5 25 175-199 4-28 (42)
310 TIGR02508 type_III_yscG type I 82.4 21 0.00046 27.8 10.1 90 114-212 17-106 (115)
311 PF13929 mRNA_stabil: mRNA sta 82.1 48 0.001 31.7 14.1 74 121-194 185-259 (292)
312 COG4455 ImpE Protein of avirul 82.1 10 0.00022 34.4 8.3 55 179-234 7-61 (273)
313 PRK09687 putative lyase; Provi 81.6 52 0.0011 31.7 29.5 136 347-498 141-277 (280)
314 COG4785 NlpI Lipoprotein NlpI, 81.3 43 0.00092 30.5 18.1 177 222-411 79-265 (297)
315 PF02284 COX5A: Cytochrome c o 81.3 7.8 0.00017 30.3 6.5 45 437-481 29-73 (108)
316 PF13374 TPR_10: Tetratricopep 81.0 4.4 9.5E-05 25.4 4.6 28 247-274 3-30 (42)
317 PF09477 Type_III_YscG: Bacter 80.7 26 0.00057 27.7 9.4 82 114-203 18-99 (116)
318 PF11207 DUF2989: Protein of u 80.3 29 0.00063 31.2 10.7 77 151-228 119-198 (203)
319 PF09613 HrpB1_HrpK: Bacterial 79.7 39 0.00086 29.1 13.4 52 149-202 21-73 (160)
320 PF02259 FAT: FAT domain; Int 78.1 76 0.0016 31.5 25.2 65 382-446 145-212 (352)
321 PF13181 TPR_8: Tetratricopept 77.7 4 8.6E-05 24.3 3.4 26 456-481 4-29 (34)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 77.7 21 0.00046 27.7 7.7 47 399-445 23-69 (103)
323 PF02284 COX5A: Cytochrome c o 76.9 15 0.00033 28.7 6.9 45 401-445 28-72 (108)
324 PF07035 Mic1: Colon cancer-as 76.8 51 0.0011 28.8 15.6 31 300-330 16-46 (167)
325 KOG4234 TPR repeat-containing 76.8 29 0.00063 31.1 9.4 90 356-447 103-197 (271)
326 COG3947 Response regulator con 76.7 72 0.0016 30.5 17.4 69 421-490 282-355 (361)
327 PF06552 TOM20_plant: Plant sp 76.2 18 0.0004 31.7 8.1 29 469-499 96-124 (186)
328 KOG4648 Uncharacterized conser 75.4 18 0.00038 35.1 8.4 50 183-234 107-157 (536)
329 PF00637 Clathrin: Region in C 74.8 0.91 2E-05 38.7 -0.1 54 144-197 13-66 (143)
330 KOG0276 Vesicle coat complex C 74.8 36 0.00077 35.8 10.8 77 140-234 616-692 (794)
331 PF00637 Clathrin: Region in C 74.7 1.4 3.1E-05 37.4 1.1 85 424-515 13-97 (143)
332 KOG2066 Vacuolar assembly/sort 74.1 1.4E+02 0.0031 32.7 28.6 168 144-340 362-532 (846)
333 PF13181 TPR_8: Tetratricopept 72.1 11 0.00024 22.3 4.4 27 175-201 3-29 (34)
334 KOG4648 Uncharacterized conser 71.3 27 0.00058 33.9 8.5 92 356-452 105-197 (536)
335 KOG1464 COP9 signalosome, subu 70.3 98 0.0021 29.2 19.4 172 239-410 19-218 (440)
336 COG4455 ImpE Protein of avirul 69.4 35 0.00077 31.0 8.3 51 321-372 9-59 (273)
337 PF07721 TPR_4: Tetratricopept 68.3 7.1 0.00015 21.8 2.6 19 143-161 6-24 (26)
338 PF13174 TPR_6: Tetratricopept 67.8 8.1 0.00017 22.6 3.1 23 144-166 6-28 (33)
339 KOG1258 mRNA processing protei 67.0 1.8E+02 0.0039 30.9 36.9 412 69-502 44-489 (577)
340 KOG4077 Cytochrome c oxidase, 66.7 37 0.00079 27.9 7.1 45 437-481 68-112 (149)
341 PF13174 TPR_6: Tetratricopept 66.1 10 0.00022 22.1 3.3 24 178-201 5-28 (33)
342 PF07163 Pex26: Pex26 protein; 65.2 96 0.0021 29.5 10.6 88 179-269 89-181 (309)
343 KOG2659 LisH motif-containing 65.0 89 0.0019 28.7 10.2 99 134-234 22-129 (228)
344 PF10579 Rapsyn_N: Rapsyn N-te 64.7 20 0.00043 26.6 4.9 46 465-510 18-65 (80)
345 TIGR03504 FimV_Cterm FimV C-te 63.8 15 0.00032 23.9 3.8 24 252-275 5-28 (44)
346 PF10579 Rapsyn_N: Rapsyn N-te 63.2 24 0.00052 26.2 5.1 47 430-476 18-66 (80)
347 PF11663 Toxin_YhaV: Toxin wit 63.1 8.3 0.00018 31.9 3.0 34 463-498 105-138 (140)
348 TIGR03504 FimV_Cterm FimV C-te 62.3 18 0.00039 23.5 3.9 23 144-166 5-27 (44)
349 PRK11619 lytic murein transgly 61.2 2.6E+02 0.0056 30.8 37.7 269 123-411 84-374 (644)
350 smart00028 TPR Tetratricopepti 60.7 18 0.00038 20.1 3.7 26 456-481 4-29 (34)
351 PF14853 Fis1_TPR_C: Fis1 C-te 60.6 30 0.00066 23.5 5.0 33 460-494 8-40 (53)
352 cd08819 CARD_MDA5_2 Caspase ac 59.8 76 0.0016 24.2 7.6 65 121-192 21-85 (88)
353 PF13762 MNE1: Mitochondrial s 59.0 1.1E+02 0.0024 25.9 10.5 45 385-429 81-126 (145)
354 KOG4507 Uncharacterized conser 58.6 68 0.0015 33.7 9.1 86 186-275 620-705 (886)
355 PF07163 Pex26: Pex26 protein; 58.1 1.4E+02 0.003 28.5 10.3 87 320-406 90-181 (309)
356 PF10345 Cohesin_load: Cohesin 57.7 2.9E+02 0.0062 30.2 34.3 159 113-273 71-252 (608)
357 TIGR02508 type_III_yscG type I 57.5 93 0.002 24.5 8.3 50 428-483 49-98 (115)
358 COG2976 Uncharacterized protei 57.1 1.5E+02 0.0032 26.7 15.1 52 428-481 136-187 (207)
359 PF04097 Nic96: Nup93/Nic96; 56.7 1.4E+02 0.003 32.6 12.0 90 252-343 264-357 (613)
360 PF09986 DUF2225: Uncharacteri 56.1 1.2E+02 0.0026 27.8 9.8 64 455-518 120-195 (214)
361 KOG0890 Protein kinase of the 56.0 5.3E+02 0.011 32.7 26.2 312 115-447 1396-1731(2382)
362 PRK11619 lytic murein transgly 55.7 3.2E+02 0.0069 30.1 31.0 57 457-514 316-372 (644)
363 TIGR02561 HrpB1_HrpK type III 55.4 1.3E+02 0.0029 25.6 12.4 50 151-202 23-73 (153)
364 KOG2422 Uncharacterized conser 55.1 2.9E+02 0.0062 29.4 18.8 161 114-274 250-447 (665)
365 TIGR02561 HrpB1_HrpK type III 55.0 1.3E+02 0.0029 25.6 12.4 48 326-377 23-73 (153)
366 PF06552 TOM20_plant: Plant sp 54.7 1.5E+02 0.0034 26.2 12.4 116 224-378 7-137 (186)
367 PHA02875 ankyrin repeat protei 54.6 69 0.0015 32.9 9.1 37 300-336 50-88 (413)
368 KOG4279 Serine/threonine prote 54.5 3.3E+02 0.0072 29.9 15.7 129 105-236 166-315 (1226)
369 PF08424 NRDE-2: NRDE-2, neces 53.6 2.3E+02 0.005 27.9 18.8 81 189-274 47-130 (321)
370 PF08311 Mad3_BUB1_I: Mad3/BUB 53.5 1.3E+02 0.0028 24.9 8.9 43 436-478 81-124 (126)
371 PF11663 Toxin_YhaV: Toxin wit 53.3 13 0.00028 30.8 2.6 34 148-183 105-138 (140)
372 PF14689 SPOB_a: Sensor_kinase 53.3 30 0.00064 24.4 4.2 23 143-165 28-50 (62)
373 PF08311 Mad3_BUB1_I: Mad3/BUB 53.0 1.3E+02 0.0028 24.8 8.8 43 156-198 81-124 (126)
374 PRK09687 putative lyase; Provi 52.8 2.2E+02 0.0048 27.4 31.4 137 312-464 141-278 (280)
375 KOG2396 HAT (Half-A-TPR) repea 52.7 2.9E+02 0.0063 28.8 33.3 239 262-513 298-555 (568)
376 COG4785 NlpI Lipoprotein NlpI, 52.4 1.9E+02 0.0041 26.5 18.3 68 135-203 96-163 (297)
377 KOG1586 Protein required for f 52.1 2E+02 0.0043 26.7 18.3 29 252-280 160-188 (288)
378 PF12862 Apc5: Anaphase-promot 51.9 81 0.0018 24.3 7.0 23 252-274 47-69 (94)
379 KOG2297 Predicted translation 51.6 2.3E+02 0.0051 27.4 13.2 20 454-473 322-341 (412)
380 PF14689 SPOB_a: Sensor_kinase 51.2 42 0.00091 23.6 4.7 47 153-201 5-51 (62)
381 KOG4077 Cytochrome c oxidase, 51.1 1.1E+02 0.0024 25.2 7.4 45 402-446 68-112 (149)
382 PF11848 DUF3368: Domain of un 50.9 61 0.0013 21.4 5.2 31 465-495 14-44 (48)
383 PF13762 MNE1: Mitochondrial s 50.6 1.6E+02 0.0034 25.1 11.6 94 303-396 27-128 (145)
384 PF09670 Cas_Cas02710: CRISPR- 50.2 2.9E+02 0.0063 28.0 13.0 58 144-202 137-198 (379)
385 KOG2908 26S proteasome regulat 50.0 2.1E+02 0.0046 28.1 10.4 54 393-446 85-143 (380)
386 KOG2471 TPR repeat-containing 49.8 3.2E+02 0.0069 28.4 13.4 37 152-188 31-67 (696)
387 KOG2063 Vacuolar assembly/sort 49.8 4.4E+02 0.0095 30.0 15.2 39 322-360 600-638 (877)
388 PF11848 DUF3368: Domain of un 49.5 70 0.0015 21.1 5.3 33 429-461 13-45 (48)
389 PRK10941 hypothetical protein; 48.9 2.5E+02 0.0054 26.9 11.3 79 175-256 183-261 (269)
390 PF00244 14-3-3: 14-3-3 protei 48.5 2.3E+02 0.005 26.5 10.6 58 318-375 6-64 (236)
391 PF11846 DUF3366: Domain of un 48.4 90 0.002 28.0 7.8 36 449-486 140-175 (193)
392 COG2976 Uncharacterized protei 48.3 2.1E+02 0.0045 25.8 15.6 54 392-447 135-188 (207)
393 PF10366 Vps39_1: Vacuolar sor 48.3 1E+02 0.0023 24.6 7.1 25 421-445 42-66 (108)
394 COG2909 MalT ATP-dependent tra 46.4 4.8E+02 0.01 29.4 28.2 223 256-478 425-684 (894)
395 PF09670 Cas_Cas02710: CRISPR- 46.0 2.8E+02 0.0062 28.1 11.6 53 358-411 141-197 (379)
396 KOG4642 Chaperone-dependent E3 45.5 2.6E+02 0.0056 26.1 10.5 17 463-479 88-104 (284)
397 KOG2396 HAT (Half-A-TPR) repea 45.2 3.8E+02 0.0083 28.0 22.5 37 318-355 465-501 (568)
398 KOG3807 Predicted membrane pro 45.1 2.2E+02 0.0048 27.8 9.7 122 154-288 232-354 (556)
399 KOG1464 COP9 signalosome, subu 44.8 2.8E+02 0.0061 26.3 19.4 169 317-493 149-342 (440)
400 PRK10564 maltose regulon perip 44.6 50 0.0011 31.7 5.5 44 242-285 252-296 (303)
401 cd08819 CARD_MDA5_2 Caspase ac 43.6 1.5E+02 0.0032 22.7 6.8 67 157-229 21-87 (88)
402 KOG0991 Replication factor C, 43.5 2.8E+02 0.006 25.9 12.6 102 358-463 169-282 (333)
403 KOG4507 Uncharacterized conser 43.3 86 0.0019 33.1 7.1 87 395-482 619-705 (886)
404 KOG2063 Vacuolar assembly/sort 42.7 5.6E+02 0.012 29.2 16.8 34 255-288 600-633 (877)
405 cd00280 TRFH Telomeric Repeat 41.5 1.9E+02 0.0041 25.7 7.9 21 216-236 119-139 (200)
406 PF11846 DUF3366: Domain of un 40.8 1.3E+02 0.0028 27.0 7.5 42 159-202 132-173 (193)
407 COG0735 Fur Fe2+/Zn2+ uptake r 40.5 1.2E+02 0.0027 25.7 6.8 60 162-222 10-69 (145)
408 smart00777 Mad3_BUB1_I Mad3/BU 40.2 1.8E+02 0.0039 24.0 7.4 41 472-512 82-123 (125)
409 KOG2297 Predicted translation 39.9 3.6E+02 0.0078 26.2 17.7 67 292-368 269-341 (412)
410 PRK10564 maltose regulon perip 39.7 57 0.0012 31.4 5.0 41 171-211 254-295 (303)
411 PRK10941 hypothetical protein; 39.5 3.5E+02 0.0076 25.9 11.0 76 141-217 184-260 (269)
412 COG5187 RPN7 26S proteasome re 39.0 3.6E+02 0.0079 25.9 14.3 130 280-411 80-220 (412)
413 COG5187 RPN7 26S proteasome re 38.1 3.7E+02 0.0081 25.8 11.6 23 385-407 117-139 (412)
414 smart00386 HAT HAT (Half-A-TPR 37.6 76 0.0016 17.9 3.9 28 152-180 1-28 (33)
415 PF04762 IKI3: IKI3 family; I 36.6 6.1E+02 0.013 29.4 13.5 29 314-342 813-843 (928)
416 cd00280 TRFH Telomeric Repeat 36.5 2.5E+02 0.0055 25.0 8.0 20 392-411 120-139 (200)
417 KOG2908 26S proteasome regulat 36.2 4.3E+02 0.0093 26.1 10.1 54 221-274 88-143 (380)
418 KOG0687 26S proteasome regulat 35.9 4.3E+02 0.0094 25.9 16.0 63 316-378 107-174 (393)
419 COG2178 Predicted RNA-binding 35.6 3.3E+02 0.0072 24.5 9.2 18 464-481 132-149 (204)
420 PF12862 Apc5: Anaphase-promot 35.0 2.1E+02 0.0045 22.0 7.2 53 429-481 9-69 (94)
421 PF10366 Vps39_1: Vacuolar sor 34.7 1.9E+02 0.0042 23.1 6.7 27 455-481 41-67 (108)
422 KOG4521 Nuclear pore complex, 33.7 8.5E+02 0.018 28.6 15.7 115 143-269 925-1044(1480)
423 COG0735 Fur Fe2+/Zn2+ uptake r 33.6 2.4E+02 0.0051 24.0 7.5 62 440-502 8-69 (145)
424 KOG0686 COP9 signalosome, subu 32.8 5.4E+02 0.012 26.1 11.6 96 348-445 150-256 (466)
425 COG5108 RPO41 Mitochondrial DN 32.1 2.6E+02 0.0056 30.2 8.6 23 353-375 33-55 (1117)
426 KOG3364 Membrane protein invol 32.1 3.1E+02 0.0067 23.1 9.7 65 416-481 30-99 (149)
427 PF15297 CKAP2_C: Cytoskeleton 31.4 5.2E+02 0.011 25.7 10.0 64 434-499 119-186 (353)
428 PF11817 Foie-gras_1: Foie gra 31.2 2.9E+02 0.0062 26.0 8.5 57 178-234 183-244 (247)
429 COG5108 RPO41 Mitochondrial DN 30.4 3E+02 0.0065 29.8 8.7 74 143-219 33-114 (1117)
430 KOG4567 GTPase-activating prot 30.3 5.1E+02 0.011 25.2 9.5 70 403-477 263-342 (370)
431 PHA02875 ankyrin repeat protei 30.2 2.4E+02 0.0053 28.8 8.6 194 299-513 16-224 (413)
432 PF15297 CKAP2_C: Cytoskeleton 30.1 2.9E+02 0.0063 27.3 8.1 63 155-219 120-186 (353)
433 PF02847 MA3: MA3 domain; Int 30.0 2.4E+02 0.0052 22.4 6.8 22 353-374 7-28 (113)
434 PRK09857 putative transposase; 29.9 3.2E+02 0.0069 26.5 8.6 64 423-487 211-274 (292)
435 KOG0991 Replication factor C, 29.5 4.7E+02 0.01 24.4 12.2 129 143-280 135-272 (333)
436 PF11817 Foie-gras_1: Foie gra 29.0 3E+02 0.0065 25.9 8.2 61 212-272 182-244 (247)
437 PF14853 Fis1_TPR_C: Fis1 C-te 28.9 1.9E+02 0.0041 19.6 6.1 21 181-201 9-29 (53)
438 PF02847 MA3: MA3 domain; Int 28.8 2.8E+02 0.0061 22.0 7.0 60 387-448 6-67 (113)
439 PF13934 ELYS: Nuclear pore co 28.7 4.8E+02 0.01 24.2 11.9 95 360-465 90-184 (226)
440 PF09454 Vps23_core: Vps23 cor 28.6 1.1E+02 0.0023 21.9 3.8 48 416-464 6-53 (65)
441 KOG0889 Histone acetyltransfer 28.3 1.2E+03 0.026 31.3 14.5 56 138-200 2454-2509(3550)
442 PF08424 NRDE-2: NRDE-2, neces 28.1 5.9E+02 0.013 25.1 18.9 121 154-276 47-184 (321)
443 KOG1308 Hsp70-interacting prot 28.0 42 0.00091 32.8 2.1 50 361-411 127-176 (377)
444 PF07575 Nucleopor_Nup85: Nup8 27.8 1.4E+02 0.003 32.3 6.4 34 500-533 507-540 (566)
445 PRK08691 DNA polymerase III su 27.6 8E+02 0.017 27.2 11.8 84 121-207 183-279 (709)
446 PF10475 DUF2450: Protein of u 27.5 5.7E+02 0.012 24.7 11.6 119 143-272 103-223 (291)
447 KOG1308 Hsp70-interacting prot 27.4 23 0.00051 34.4 0.4 116 393-513 124-240 (377)
448 COG0790 FOG: TPR repeat, SEL1 27.3 5.6E+02 0.012 24.5 25.4 115 328-448 92-221 (292)
449 PRK13342 recombination factor 27.2 7E+02 0.015 25.6 19.8 173 223-411 152-333 (413)
450 PRK11639 zinc uptake transcrip 27.0 2.7E+02 0.0057 24.4 6.9 59 165-224 18-76 (169)
451 PF13934 ELYS: Nuclear pore co 25.9 5.3E+02 0.012 23.8 11.8 88 140-235 78-167 (226)
452 KOG1166 Mitotic checkpoint ser 25.3 2.6E+02 0.0056 32.2 7.9 73 430-502 90-163 (974)
453 KOG0292 Vesicle coat complex C 25.3 82 0.0018 34.9 3.9 101 393-514 653-753 (1202)
454 TIGR02710 CRISPR-associated pr 25.1 7.3E+02 0.016 25.1 12.3 56 144-199 136-197 (380)
455 KOG2659 LisH motif-containing 25.1 5.5E+02 0.012 23.7 9.1 64 380-445 23-91 (228)
456 PF09454 Vps23_core: Vps23 cor 25.1 2E+02 0.0043 20.6 4.6 47 172-219 7-53 (65)
457 KOG4567 GTPase-activating prot 25.0 3.9E+02 0.0084 26.0 7.7 41 335-375 265-305 (370)
458 PF02184 HAT: HAT (Half-A-TPR) 24.8 1.6E+02 0.0035 17.7 3.4 22 469-492 3-24 (32)
459 PRK11639 zinc uptake transcrip 24.6 4.1E+02 0.0089 23.2 7.7 60 444-504 17-76 (169)
460 KOG0687 26S proteasome regulat 24.5 6.9E+02 0.015 24.6 14.0 20 389-408 110-129 (393)
461 PF09868 DUF2095: Uncharacteri 23.6 3.4E+02 0.0073 21.9 5.9 37 319-356 67-103 (128)
462 cd07153 Fur_like Ferric uptake 23.3 1.8E+02 0.0039 23.3 4.9 46 179-224 6-51 (116)
463 PF07575 Nucleopor_Nup85: Nup8 23.1 2.1E+02 0.0046 30.9 6.7 27 138-165 149-175 (566)
464 KOG0376 Serine-threonine phosp 23.1 1.6E+02 0.0035 30.3 5.3 96 395-496 16-113 (476)
465 PRK07003 DNA polymerase III su 23.0 1.1E+03 0.024 26.6 13.0 84 119-205 181-277 (830)
466 KOG0890 Protein kinase of the 22.7 1.7E+03 0.037 28.7 25.7 60 453-515 1670-1729(2382)
467 PRK09462 fur ferric uptake reg 22.7 4.4E+02 0.0094 22.4 7.4 59 164-223 8-67 (148)
468 COG0790 FOG: TPR repeat, SEL1 22.6 6.8E+02 0.015 23.9 23.9 83 328-413 128-221 (292)
469 PF03745 DUF309: Domain of unk 22.6 2.8E+02 0.0062 19.5 5.7 32 185-216 11-42 (62)
470 PF12926 MOZART2: Mitotic-spin 22.4 3.6E+02 0.0078 20.6 7.7 42 474-515 29-70 (88)
471 PF09868 DUF2095: Uncharacteri 22.3 3.2E+02 0.007 22.0 5.6 33 459-492 67-99 (128)
472 PRK14958 DNA polymerase III su 22.3 9.6E+02 0.021 25.5 12.2 72 133-207 195-279 (509)
473 COG2812 DnaX DNA polymerase II 22.2 8E+02 0.017 26.1 10.3 87 118-208 180-280 (515)
474 KOG4642 Chaperone-dependent E3 22.1 6.6E+02 0.014 23.6 11.0 115 325-443 22-142 (284)
475 PF15469 Sec5: Exocyst complex 22.1 5.5E+02 0.012 22.6 14.5 52 178-235 62-113 (182)
476 PRK09462 fur ferric uptake reg 21.9 4.9E+02 0.011 22.0 7.6 60 443-503 7-67 (148)
477 cd07153 Fur_like Ferric uptake 21.7 2.2E+02 0.0047 22.8 5.1 46 458-503 5-50 (116)
478 PF12926 MOZART2: Mitotic-spin 21.6 3.7E+02 0.0081 20.5 8.0 43 439-481 29-71 (88)
479 KOG3636 Uncharacterized conser 21.0 9.2E+02 0.02 24.8 14.5 88 306-394 176-271 (669)
480 PF04090 RNA_pol_I_TF: RNA pol 21.0 4.7E+02 0.01 23.7 7.3 59 140-199 43-102 (199)
481 smart00777 Mad3_BUB1_I Mad3/BU 20.9 4.8E+02 0.011 21.5 9.6 43 435-477 80-123 (125)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.5e-64 Score=548.39 Aligned_cols=492 Identities=18% Similarity=0.262 Sum_probs=394.8
Q ss_pred cchhhHHHHHHHHhhhc---hHHHHHHHhhhcCCCCChHHHHHHH-HHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHH
Q 007543 68 AGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTL-VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLM 143 (599)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 143 (599)
.+.+.|+.++..+.+.+ +|..+|+.+....+..|+..++..+ ..+...++.+.+.+++..+.+.+ +.++..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 45568999999998765 5666666443333334555555444 44667788899999999988876 5788999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------------
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY------------ 211 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~------------ 211 (599)
|+++|++.|++++|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999975 69999999999999999999999999999888777766655
Q ss_pred -----------------------HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 212 -----------------------QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 212 -----------------------~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+.|+++|++.|++++|.++|+.|. .+|..+||.+|.+|++.|+.++|.++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 556667777777778888877774 46777888888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 269 FALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (599)
|++|.+.|+.||..||++++.+ .+++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 8888888888888888888876 36677788888888888888888888888888888888888888888775 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHH
Q 007543 346 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ-DGFVPNVITYGTL 424 (599)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l 424 (599)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 677888888888888888888888888888888888888888888888888888888888888864 5778888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCc
Q 007543 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADE 503 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 503 (599)
+++|++.|++++|.+++++| ++.|+..+|++++.+|+.+|+++.|..+++++.+ +.|+ ..+|..|++.|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 88888888888888887765 5678888888888888888888888888888765 4554 5678888889999999
Q ss_pred HHHHHHHHHhccCCCC--CCCcccccccccCCC---CCCCCCCCCCCCcccCCCC--------------CCCCCCCcchh
Q 007543 504 RNEANELLGNFNHPNN--EPGINGLSISVDEED---DDDDDDEDDDDNIYHDGDG--------------DGDGDDNEDDA 564 (599)
Q Consensus 504 ~~~A~~~~~~~~~~~~--~p~~~~~~~~i~~~~---~~~d~~~~~~~~i~~~~~~--------------~~~~~~~~~~~ 564 (599)
+++|.++++.|.+.|. .|+++|+ ++++.. ..+|..||...+||..++. ....+++++++
T Consensus 544 ~~~A~~v~~~m~~~g~~k~~g~s~i--~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~ 621 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSMHPACTWI--EVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621 (697)
T ss_pred HHHHHHHHHHHHHcCCccCCCeeEE--EECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH
Confidence 9999999999986664 5777776 666654 6889999999999876654 22368899999
Q ss_pred hhhhhcCCCCcceeeecC
Q 007543 565 EETIACSGKEDELIFFNG 582 (599)
Q Consensus 565 ~~~~~~~~~e~~a~a~~~ 582 (599)
|+..++.||||+||||.=
T Consensus 622 ~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 622 EKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred HHHHHHhccHHHHHHhhC
Confidence 999999999999999864
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-63 Score=555.20 Aligned_cols=515 Identities=18% Similarity=0.261 Sum_probs=419.2
Q ss_pred hhhhcCCCCchHHHHHhhhhhccchhhcccchhhHHHHHHHHhhhc---hHHHHHHHhhhcCCCCChHHHHHHHH-Hhhh
Q 007543 39 GVICMGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLV-RLKQ 114 (599)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~l~-~~~~ 114 (599)
..++.+.+..+.+...+..++.+ +.+|+++||.+|.+|.+.| +|..+|+.+ ...+..|+..++..+. .+..
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACEL 300 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHh
Confidence 34555566666666666665554 5689999999999998877 556666644 3455667666666555 4677
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.++.+.+.+++..+.+.+ +.++..+|+.|+.+|+++|++++|.++|++|.. ||.++||++|.+|++.|++++|++
T Consensus 301 ~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 301 LGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred cCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHH
Confidence 889999999999999876 678999999999999999999999999999974 699999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+. +.|+.|+..+||.||++|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~---~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE---RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999998 457889999999999999999999999999999875
Q ss_pred cCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007543 275 RGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 351 (599)
Q Consensus 275 ~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (599)
+|.++|++++.+ .++.++|..+|++|.. +++||..||+.++.+|++.|..+.+.+++..+.+.|+.+|..++
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 578889988886 4778888999998875 47888888888888888888888888888888888888887777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
++||++|+++|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 78888888888777777777766 4677777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-------------
Q 007543 432 NNLEKMMEIYDKMR-VNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL------------- 497 (599)
Q Consensus 432 g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~------------- 497 (599)
|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. +.||..+|.+|+.+
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 77777777777777 56777777777777777777777777777777773 56666666665554
Q ss_pred ---------------------HhhcCcHHHHHHHHHhccCCCC--CCCcccccccccCCC---CCCCCCCCCCCCcccCC
Q 007543 498 ---------------------AKTADERNEANELLGNFNHPNN--EPGINGLSISVDEED---DDDDDDEDDDDNIYHDG 551 (599)
Q Consensus 498 ---------------------~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~~i~~~~---~~~d~~~~~~~~i~~~~ 551 (599)
|...|++++|.++.+.|++.+. .|+.+|+ +++++. ..+|..||+..+||..+
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i--e~~~~~~~f~~~d~~h~~~~~i~~~l 757 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV--EVKGKVHAFLTDDESHPQIKEINTVL 757 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE--EECCEEEEEecCCCCCcchHHHHHHH
Confidence 4567888888888888886554 5666665 788765 68899999999999866
Q ss_pred CC--------------CCCCCCCcchhhhhhhcCCCCcceeeecC
Q 007543 552 DG--------------DGDGDDNEDDAEETIACSGKEDELIFFNG 582 (599)
Q Consensus 552 ~~--------------~~~~~~~~~~~~~~~~~~~~e~~a~a~~~ 582 (599)
+. .... +.++++|+..++.||||+||||.=
T Consensus 758 ~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l 801 (857)
T PLN03077 758 EGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGL 801 (857)
T ss_pred HHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhh
Confidence 64 1112 446788999999999999999963
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-61 Score=526.97 Aligned_cols=478 Identities=18% Similarity=0.294 Sum_probs=421.7
Q ss_pred hHHHHHhhhhhccchhh-cccchhhHHHHHHHHhhhch---HHHHHHHhhhcCCCCChHHHHHHH-HHhhhcccHHHHHH
Q 007543 49 RKFMQKRRKVEVFKDAA-DEAGKKNWRRLMNQIEEVGS---AVAVLRSERTRGQPLPKDLVLGTL-VRLKQLKKWNVVSE 123 (599)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---a~~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~a~~ 123 (599)
+.+...+..++.+.... ..++...++.++..+.+.+. |..+++.+. .|+..++..+ ..+++.++++.|.+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 34444444454443322 12344555666667766554 444444221 1555555544 45778899999999
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 124 VLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
+|+.+.+.+ +.++..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|
T Consensus 459 lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 459 VLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 999998876 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
+.||..+|+.+|.+|++.|++++|.++|++|... ..++.||..+|+.||.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999753 357899999999999999999999999999999999999999999
Q ss_pred HHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007543 284 YNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 360 (599)
Q Consensus 284 ~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (599)
|+.++.+ .|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999986 5889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 440 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (599)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHh----c-------------------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 441 YDKMRVNGIKPNQTIFTTIMDAYGK----N-------------------KDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 441 ~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||..||..++.+
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999876542 1 2246799999999999999999999999988
Q ss_pred HhhcCcHHHHHHHHHhccCCCCCCCcccccccccCC
Q 007543 498 AKTADERNEANELLGNFNHPNNEPGINGLSISVDEE 533 (599)
Q Consensus 498 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~i~~~ 533 (599)
+...+..+.+..+++.+...+..|....++.+++..
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 888899999999999887777778888877777764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-60 Score=520.86 Aligned_cols=457 Identities=18% Similarity=0.280 Sum_probs=417.9
Q ss_pred hcccchhhHHHHHHHHhhh---chHHHHHHHhhhcCCCCChHHH-HHHHH-HhhhcccHHHHHHHHHHHHHcCCCCCCHH
Q 007543 65 ADEAGKKNWRRLMNQIEEV---GSAVAVLRSERTRGQPLPKDLV-LGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEM 139 (599)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~---~~a~~~l~~~~~~~~~~~~~~~-~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 139 (599)
...++...|..++..+.+. .+|..+|+.|.. .+.++++.+ ...+. .+...+..+.|.++++.+.. ++..
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~ 438 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLS 438 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHH
Confidence 3445667788888888544 467888886544 444554443 33333 35566788888888876653 7899
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
+|+.|+.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHhcc---cCCH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE--RGVQQSTVTYNSLMSF---ETNY 294 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~---~~~~ 294 (599)
+.|++++|.++|+.|. ..++.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++++.+ .|++
T Consensus 519 k~G~~eeAl~lf~~M~---~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMR---SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HCcCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999998 467899999999999999999999999999999986 6899999999999986 5899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 295 KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM 374 (599)
Q Consensus 295 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (599)
++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 007543 375 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT 454 (599)
Q Consensus 375 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (599)
.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----c-------------------CcHHHHHHHH
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT----A-------------------DERNEANELL 511 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~A~~~~ 511 (599)
+|++++.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ . +..++|..++
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999876542 1 2346799999
Q ss_pred HhccCCCCCCCcccccccc
Q 007543 512 GNFNHPNNEPGINGLSISV 530 (599)
Q Consensus 512 ~~~~~~~~~p~~~~~~~~i 530 (599)
++|.+.|..|+..++..++
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHH
Confidence 9999999999988776665
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-61 Score=536.98 Aligned_cols=513 Identities=18% Similarity=0.250 Sum_probs=371.8
Q ss_pred hcccchhhHHHHHHHHhhhc---hHHHHHHHhhhcCCCCChHHHHHHHHH-hhhcccHHHHHHHHHHHHHcCCCCCCHHh
Q 007543 65 ADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMD 140 (599)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 140 (599)
.+++|+++||.+|.++.+.| +|..+|+.+. ..+..|+..++..+.+ +...+++..+.+++..+.+.+ +.++..+
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~ 224 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDV 224 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccch
Confidence 35689999999999998876 5566666543 3456676666665544 556677778888888887765 5677788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
|++|+.+|+++|++++|.++|++|.+ ||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 88888888888888888888888864 57788888888888888888888888888888888887777777777777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEV 297 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a 297 (599)
.|+.+.|.+++..+. +.|+.||..+||.|+.+|++.|++++|.++|++|.. ||.++||+++.+ .|++++|
T Consensus 301 ~g~~~~a~~l~~~~~---~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 301 LGDERLGREMHGYVV---KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred cCChHHHHHHHHHHH---HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHH
Confidence 777777777777776 345667777777777777777777666666666643 466666666664 3556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||++|+++|++++|.++|++|.+
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 452 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE- 452 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666665542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----------------------------------hCCC---------
Q 007543 378 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK----------------------------------QDGF--------- 414 (599)
Q Consensus 378 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------------------------~~~~--------- 414 (599)
+|..+|+++|.+|++.|+.++|+.+|++|. +.|+
T Consensus 453 ---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 453 ---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred ---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 244444444444444444444444444443 2221
Q ss_pred ---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHH
Q 007543 415 ---------------------VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 415 ---------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (599)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 45667788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccccccCCCCCC---------------
Q 007543 474 VWYKEME-SCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDD--------------- 537 (599)
Q Consensus 474 ~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~--------------- 537 (599)
++|+.|. +.|+.|+..+|++++.++.+.|++++|.+++++|. .+|+......++..+...+
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999998 68999999999999999999999999999999983 4455544433443322111
Q ss_pred ----CCCCCCCCCcccCCCCCCC-----CCCCcchhhhhhhcCCCCcc-----eeeecCCcccccccccccccc
Q 007543 538 ----DDDEDDDDNIYHDGDGDGD-----GDDNEDDAEETIACSGKEDE-----LIFFNGDHQRSQEGLHTLQTV 597 (599)
Q Consensus 538 ----d~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~e~~-----a~a~~~~~~~~~~~~~~~~~~ 597 (599)
......+.++|...++|.+ ..+.+.+.++.++|+|+|.. .++-+..||+..+.|..|+.+
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHH
Confidence 1122234678889999987 46777789999999999974 344455799999999888754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-57 Score=497.94 Aligned_cols=463 Identities=20% Similarity=0.302 Sum_probs=381.6
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 104 LVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY 183 (599)
Q Consensus 104 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 183 (599)
.+...+..+...+++++|.++|+++...+.+.++..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.|+.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34455666777899999999999999877677899999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc-------------------------
Q 007543 184 GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE------------------------- 238 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------------------------- 238 (599)
++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.++|++|.+.+
T Consensus 169 ~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999999 45899999999999999999999999999997531
Q ss_pred -------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcC
Q 007543 239 -------KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAG 308 (599)
Q Consensus 239 -------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g 308 (599)
+.++.||..+||.||++|+++|++++|.++|++|.+ +|.++||+++.+ .|+.++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 123455666677788888888888888888888754 578888888876 477888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 309 LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388 (599)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 388 (599)
+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|.+ ||..+||+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888863 68888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKPNQTIFTTIMDAYGKNK 467 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g 467 (599)
||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888888888874 688888888888888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccccccCCCCCCCCCCCCCCCc
Q 007543 468 DFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDDDDDEDDDDNI 547 (599)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~d~~~~~~~~i 547 (599)
++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.++.. ...+. .+.++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~y~---------------~L~~~ 537 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYV---------------VLLNL 537 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-CcchH---------------HHHHH
Confidence 888888887765 467888888888888888888888888888876554431 11111 14567
Q ss_pred ccCCCCCCC-----CCCCcchhhhhhhcCCCCcc---eeeec--CCcccccccccccccc
Q 007543 548 YHDGDGDGD-----GDDNEDDAEETIACSGKEDE---LIFFN--GDHQRSQEGLHTLQTV 597 (599)
Q Consensus 548 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~e~~---a~a~~--~~~~~~~~~~~~~~~~ 597 (599)
|...++|.+ ..+.+.+.++.++|+|+|.. ..++. ..||+..+.|..|.++
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 777888766 34666678888999999865 33444 4699999888877653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=3.7e-24 Score=244.02 Aligned_cols=385 Identities=17% Similarity=0.163 Sum_probs=213.6
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
...++++.|.+.++.+.... +.+...+..+...|.+.|+.++|...|+++.+.+ +.+...+..++..|.+.|++++|
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 34455555555555554433 2344455555555555556666665555555443 22445555555555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 193 EAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
..+++++.+.. +.+..+|..+...+...|++++|...|+.+++.. +.+...+..+...|.+.|++++|..+|+++
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ----PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665555432 2344555555556666666666666666555321 334445555555666666666666666555
Q ss_pred HHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007543 273 AERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK 349 (599)
Q Consensus 273 ~~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (599)
.+.. +.+...+..+.. ..+++++|.++++.+.... +.+...+..+...+.+.|++++|...|+++...+ |+..
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 5432 112233333222 2455666666666665543 2344555555666666666666666666665542 3334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
++..+...+.+.|++++|...++++.+.. +.+...+..+...|...|+.++|...|+++.+.. +++..+++.+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55555666666666666666666655532 3455556666666666666666666666666544 345556666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANE 509 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 509 (599)
+.|+ ++|..+++++.+.. +-+..++..+...+...|++++|..+++++.+.+ +.+..++..+..++.+.|+.++|.+
T Consensus 816 ~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred hcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666 55666666665431 2234455566666666666666666666666643 3355566666666666666666666
Q ss_pred HHHhc
Q 007543 510 LLGNF 514 (599)
Q Consensus 510 ~~~~~ 514 (599)
+++++
T Consensus 893 ~~~~~ 897 (899)
T TIGR02917 893 ELDKL 897 (899)
T ss_pred HHHHH
Confidence 66655
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=4.4e-23 Score=235.16 Aligned_cols=389 Identities=14% Similarity=0.080 Sum_probs=235.5
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
..++++.|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|.
T Consensus 477 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHH
Confidence 3445555555555544432 2333444455555555555555555555555443 224555555555666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
.+|+++...++ .+...+..+...+...|++++|.++++.+.+.. +.+..+|..+...|.+.|++++|...|+++.
T Consensus 554 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 554 AWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA----PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66665555432 244455555666666666666666666665321 4455566666666666666666666666665
Q ss_pred HcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007543 274 ERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA 350 (599)
Q Consensus 274 ~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 350 (599)
+... .+...+..+.. ..+++++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.+ +.+...
T Consensus 629 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 629 ALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 5421 12222322222 2466666666666666543 2345566666666667777777777777666654 455566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
+..+...+...|++++|...|+.+... .|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|.+
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 666666777777777777777776654 3444556666667777777777777777766654 3466677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHH
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANEL 510 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 510 (599)
.|++++|.+.|+++.+.. +++..++..+...+...|+ .+|+.+++++.+.. +-+..++..+..++...|++++|..+
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777553 3456677777777777777 66777777776632 33345566666777777777778777
Q ss_pred HHhccCCCC
Q 007543 511 LGNFNHPNN 519 (599)
Q Consensus 511 ~~~~~~~~~ 519 (599)
++++.+.++
T Consensus 860 ~~~a~~~~~ 868 (899)
T TIGR02917 860 LRKAVNIAP 868 (899)
T ss_pred HHHHHhhCC
Confidence 777765544
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.4e-20 Score=192.85 Aligned_cols=308 Identities=16% Similarity=0.149 Sum_probs=230.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHH
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIILKLFVE 220 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~ 220 (599)
....+...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999874 33677899999999999999999999999987543322 2467788889999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKI 300 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~ 300 (599)
.|++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 120 ~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------ 177 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG----DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------ 177 (389)
T ss_pred CCCHHHHHHHHHHHHcCC----cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH------------------
Confidence 999999999999997532 4567788899999999999999999998887653211000
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007543 301 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380 (599)
Q Consensus 301 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 380 (599)
.....+..+...+.+.|++++|..+|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+..
T Consensus 178 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 178 ----------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred ----------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 011235567777888888888888888887754 444567777888888888888888888888765322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 007543 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 460 (599)
Q Consensus 381 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (599)
....+++.++.+|...|+.++|...++++.+. .|+...+..++..+.+.|++++|.++++++.+. .|+...+..++
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 22355677777888888888888888887765 355556677778888888888888888877754 57777777777
Q ss_pred HHHHh---cCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 461 DAYGK---NKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 461 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
..+.. .|+.+++..++++|.+.++.|++.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 76664 457778888888887766666654
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.4e-20 Score=191.23 Aligned_cols=313 Identities=14% Similarity=0.110 Sum_probs=251.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 255 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (599)
.......+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.++............++..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 33444556788999999999999998754 36678899999999999999999999999853110000113567888999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV 335 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (599)
|.+.|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.+.
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~---------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDE---------------------------------GDFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcC---------------------------------CcchHHHHHHHHHHHHHhchHHHHHHH
Confidence 99999999999999888753 134567889999999999999999999
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 336 FEEMLDAGVRPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 336 ~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999988653332 2245677888899999999999999998753 33566788888999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 412 DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 412 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
.+......+++.++.+|.+.|++++|.+.++++.+. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++
T Consensus 243 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~ 318 (389)
T PRK11788 243 QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGF 318 (389)
T ss_pred HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHH
Confidence 643333567889999999999999999999999875 57777778999999999999999999999988 47999888
Q ss_pred HHHHHHHhh---cCcHHHHHHHHHhccCCCCCCCccccc
Q 007543 492 NILLSLAKT---ADERNEANELLGNFNHPNNEPGINGLS 527 (599)
Q Consensus 492 ~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~ 527 (599)
..++..+.. .|+.+++..+++++.+....|+..+.+
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 888876654 568899999999887655555555543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-18 Score=170.15 Aligned_cols=370 Identities=14% Similarity=0.132 Sum_probs=276.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY-QII 214 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~l 214 (599)
.-..+|..+.+.+-..|++++|+.+++.+.+.... .+..|..+..++...|+.+.|.+.|.+.++ +.|+.... ..+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence 44678888999999999999999999999987432 678999999999999999999999988877 45555433 445
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHhcccC
Q 007543 215 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ--QSTVTYNSLMSFET 292 (599)
Q Consensus 215 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~ 292 (599)
...+-..|++++|...|.+.++.. +-=...|+.|...+-.+|++..|+..|++..+.... +--.....++...+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q----p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ----PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC----CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 555666888999998888887642 233467888888888889999999988888764211 11122333455567
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
.+++|...|....... +-..+.+..+...|...|.++.|+..|++.++.. +.=...|+.|..++-..|++.+|.+.++
T Consensus 267 ~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 7788887777776643 2244667777777888888888888888887763 3335678888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 452 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 452 (599)
+..... +....+.+.|...|...|.+++|..+|....+.. +--....+.|...|-.+|++++|..-|++.+. +.|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 877652 3345677788888888888888888888877643 22345677888888888888888888888774 5677
Q ss_pred -HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 453 -QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 453 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
...|+.+...|-..|+.+.|.+.+.+.+. +.|.- ..++.|.+.+...|++.+|..-++...+.+++
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 45888888888888888888888888877 55654 56778888888888888888888886655443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.6e-17 Score=179.01 Aligned_cols=332 Identities=9% Similarity=-0.008 Sum_probs=197.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
++..+.+.|++++|..+++........ +...+..++.++...|++++|++.|+++....+. +...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence 334444445555555555544443221 2333334444444455555555555555443222 33344444445555555
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HhcccCCHHHHHHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS-LMSFETNYKEVSKIYD 302 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~a~~~~~ 302 (599)
+++|...+++++... +.+...+..+...+...|++++|...++.+......+....++. .+...|++++|...++
T Consensus 126 ~~~Ai~~l~~Al~l~----P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAF----SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555554321 22334444455555555555555555544433321111111111 1112345555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCC
Q 007543 303 QMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ----ARTVFKCMRRDR 378 (599)
Q Consensus 303 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~ 378 (599)
.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+..+...|...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 55444322334445555677888888888888888888765 5567777888888888888875 788888887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHH
Q 007543 379 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFT 457 (599)
Q Consensus 379 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~ 457 (599)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.|+++.+. .|+.. .+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 3456778888888888888888888888888764 335666777888888888899888888888764 35533 344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
.+..++...|++++|...|+++.+ ..|+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~--~~P~~ 385 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQ--ARASH 385 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hChhh
Confidence 456678888889999888888877 34443
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2e-16 Score=182.17 Aligned_cols=359 Identities=14% Similarity=0.057 Sum_probs=194.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH------------
Q 007543 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-ALTY------------ 211 (599)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~------------ 211 (599)
...+...|++++|+..|++..+.. +.+...+..|...|.+.|++++|+..|++..+..+... ...+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455677888888888888888764 23677888888888888888888888888877544321 1111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh---
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM--- 288 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll--- 288 (599)
......+.+.|++++|++.|+++++.. +.+...+..+...+...|++++|++.|++..+.... +...+..+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~ 429 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 122345677888888888888888643 455667778888888888888888888888765321 121211111
Q ss_pred ------------------------------------------cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007543 289 ------------------------------------------SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 326 (599)
Q Consensus 289 ------------------------------------------~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 326 (599)
...+++++|.+.+++..+... -+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 013556666666666665432 2344555666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----------------------------
Q 007543 327 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR---------------------------- 378 (599)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------------- 378 (599)
|++++|...++++.+.. +.+...+..+...+...|+.++|+..++.+....
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 66666666666665542 2233333323233333444444444443322110
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 379 -----------CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 379 -----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.+.+...+..+...+.+.|+.++|+..|++..+.. +.+...+..++..|...|++++|.+.++...+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 12222333344444444455555555555444432 223444444445555555555555555544432
Q ss_pred CCCc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 448 GIKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF--PP---DQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 448 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.| +..++..+..++...|++++|.++++++....- +| +...+..+...+...|+.++|...+++.
T Consensus 667 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 667 --ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred --CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 233344444444445555555555554443210 11 1122333344444455555555555444
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.4e-16 Score=172.13 Aligned_cols=390 Identities=13% Similarity=0.062 Sum_probs=264.2
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 191 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 191 (599)
+-..++++.|.+.++.+.+.. +++..|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344567777777777766543 345666777777777777777777777777653 2255677777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH---------------------
Q 007543 192 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--------------------- 250 (599)
Q Consensus 192 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------------------- 250 (599)
|+..|......+...+.. ...++..+... .+.......++..... .|......
T Consensus 213 A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPEN-LPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCC-CCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 777666554432221221 11112111111 1111111111111000 01100000
Q ss_pred ------HHHHHH------HHcCCHHHHHHHHHHHHHcC-CCCCH-HHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCH
Q 007543 251 ------MMIYMY------KKAGGYEKARKLFALMAERG-VQQST-VTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDV 313 (599)
Q Consensus 251 ------~li~~~------~~~g~~~~A~~~~~~m~~~g-~~~~~-~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~ 313 (599)
.++..+ ...+++++|.+.|++..+.+ ..|+. ..++.+-. ..|++++|...++...... +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 001101 12367899999999998765 23332 23333222 3689999999999998864 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 393 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 393 (599)
..|..+...+...|++++|+..|++.++.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 688889999999999999999999998875 5567889999999999999999999999998763 34567788888899
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH------HHHHHHHHHHhcC
Q 007543 394 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT------IFTTIMDAYGKNK 467 (599)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g 467 (599)
.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|.+.|++..+..-..+.. .++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999988754 3467889999999999999999999999988642111111 1222223344579
Q ss_pred CHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCC
Q 007543 468 DFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHP 517 (599)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 517 (599)
++++|.+++++..+. .|+. ..+..+...+...|++++|..++++..+.
T Consensus 523 ~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999874 4544 56888899999999999999999986544
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.3e-16 Score=175.57 Aligned_cols=406 Identities=12% Similarity=0.087 Sum_probs=264.9
Q ss_pred CCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007543 97 GQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSH 176 (599)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 176 (599)
..+..+..+.--+......++.+.|.+++..+.... +.+...+..+...+.+.|++++|.++|++..+.. +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 334444444444444455677777777776665422 3455567788888888888888888888877653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 177 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 177 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
..++..+...|++++|+..+++..+..+. +.. +..+..++...|+.++|+..++++++.. +.+...+..+...+
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----P~~~~~~~~la~~l 160 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA----PQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 77778888888888888888888776332 445 7777777888888888888888887542 44556666677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHhcc--------cCCH---HHHHHHHHHHHHc-CCCCCHH-HH-
Q 007543 257 KKAGGYEKARKLFALMAERGVQQST------VTYNSLMSF--------ETNY---KEVSKIYDQMQRA-GLQPDVV-SY- 316 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~ll~~--------~~~~---~~a~~~~~~m~~~-g~~~~~~-~~- 316 (599)
...|..++|+..++.... .|+. .....++.. .+++ ++|++.++.+.+. ...|+.. .+
T Consensus 161 ~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 777888888877765543 1221 001111110 1123 5677777777753 1122221 11
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 007543 317 ---ALLINAYGKARREEEALAVFEEMLDAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP---DICSYTTM 389 (599)
Q Consensus 317 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l 389 (599)
...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+.+|+++....... .......+
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 11133445668888888888888776521 222 22224667888888888888888876542111 12445566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGF-----------VPN---VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... +-+...
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l 395 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGL 395 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 6677888888888888888775421 123 2345566777788888888888888887642 344667
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
+..+...+...|++++|++.+++..+ +.|+. ..+......+...|++++|..+++++.+..
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888888877 44554 555566667788888888888888776443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=8e-18 Score=165.19 Aligned_cols=397 Identities=16% Similarity=0.190 Sum_probs=319.8
Q ss_pred hHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 102 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALME 181 (599)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 181 (599)
+...+....++-+-+++.+|.+....+-.++ +.+......+-..+.+..+.+....--....+.. +.-..+|..+..
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN 124 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLAN 124 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHH
Confidence 3446666677777789999888765554443 2333444455677778888887766555555442 225789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHH-HHHHHHHHHHcC
Q 007543 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM-FHMMIYMYKKAG 260 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g 260 (599)
.+-..|++++|+.+++.+++..++ ....|..+..++...|+.+.|.+.|...+.. .|+... .+.+.......|
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql-----nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL-----NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-----CcchhhhhcchhHHHHhhc
Confidence 999999999999999999986544 6779999999999999999999999999853 565544 344666677789
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHH---HHHhcccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 007543 261 GYEKARKLFALMAERGVQQS-TVTY---NSLMSFETNYKEVSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEEALAV 335 (599)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~~~-~~~~---~~ll~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 335 (599)
++++|...|-+..+.. |. .+.| ..++...|+...|+..|++..+.. |+ ...|-.|...|...+.++.|...
T Consensus 199 rl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred ccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 9999999998887652 32 1223 334556789999999999998864 43 46789999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007543 336 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 414 (599)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 414 (599)
|.+..... +...+.+..+...|...|.++-|+..+++..+. .|+ +..|+.|..++-..|+..+|...+++.....
T Consensus 275 Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 275 YLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 99987763 445678888888999999999999999999875 444 5789999999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHH
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKN 492 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~ 492 (599)
+-...+.+.|...|...|++++|..+|....+ +.|. ....+.|...|-++|++++|+..+++.++ +.|+. ..++
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 33567889999999999999999999999885 4566 56889999999999999999999999998 88887 5688
Q ss_pred HHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 493 ILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 493 ~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
.+...|...|+++.|.+.+.+....++
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999999999999999999999765554
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=4.4e-16 Score=179.37 Aligned_cols=357 Identities=11% Similarity=0.066 Sum_probs=257.4
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH------------HH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP-SVVSHT------------AL 179 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~------------~l 179 (599)
...++++.|...++.+.+.. +.+...+..|...|.+.|++++|+..|++..+..... ....|. .+
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34678889999998888765 4567888899999999999999999999988764221 112222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH--------
Q 007543 180 MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM-------- 251 (599)
Q Consensus 180 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------- 251 (599)
...+.+.|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++++.. +.+...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD----PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhc
Confidence 44567889999999999999886543 66677788889999999999999999988642 222333222
Q ss_pred ----------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHH---HhcccCC
Q 007543 252 ----------------------------------MIYMYKKAGGYEKARKLFALMAERGVQQST-VTYNS---LMSFETN 293 (599)
Q Consensus 252 ----------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~---ll~~~~~ 293 (599)
+...+...|++++|++.|++..+.. |+. ..+.. +....|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 2344556788899999998888753 432 22222 2234688
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------------------------------- 342 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------- 342 (599)
+++|...++++.+... .+...+..+...+.+.++.++|+..++.+...
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999998877532 23333322323333444444444443322100
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007543 343 --------GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 414 (599)
Q Consensus 343 --------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 414 (599)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..|...|+.++|++.++.+.+..
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~- 667 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA- 667 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-
Confidence 124556677888899999999999999999998863 4568889999999999999999999999888653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--Cc---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI--KP---NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+.+..++..+..++...|++++|.++++++....- .| +...+..+...+...|++++|+..|++...
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33566777888999999999999999999986421 22 234667778889999999999999999975
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.8e-16 Score=166.99 Aligned_cols=356 Identities=10% Similarity=0.020 Sum_probs=257.0
Q ss_pred HHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 109 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 188 (599)
Q Consensus 109 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 188 (599)
+..+...++...|..+++.+.... +-+......++......|++++|...|+++..... .+...|..+...+.+.|+
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 334445677888888877777664 34455566666777778999999999998888742 367788888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 189 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 189 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+++|++.|+++.+..+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 126 ~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 126 YATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV----PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999988888875332 56677788888888899999988888776432 2333344333 347788899999888
Q ss_pred HHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 007543 269 FALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE----ALAVFEEMLD 341 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~---ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 341 (599)
++.+.+....++...+.. .+...+++++|...++...... +.+...+..+...|.+.|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 888776543233332222 2234688888988888888765 3456778889999999999885 8999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HH
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV-IT 420 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~ 420 (599)
.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|+++...+ |+. ..
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 64 5567788999999999999999999999988753 3356677778889999999999999999988763 443 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHH----HHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIF----TTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+..+..++...|+.++|.+.|++..+.. |+ ...| ..+-.++...+...+...+..++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR--ASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 4456778889999999999999988642 22 2223 333444444555554445666653
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.8e-15 Score=163.67 Aligned_cols=361 Identities=12% Similarity=0.023 Sum_probs=258.0
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 108 TLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 187 (599)
Q Consensus 108 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 187 (599)
....+..+++++.|.+.++.+.+.. +.+...+..+..+|...|++++|..-|......+...+. ....++..+....
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 242 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKF 242 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHH
Confidence 3344667899999999999988775 456778889999999999999999999877655322222 2222222222111
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHH---------------------------HHHH------HHHcCCHHHHHHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPR--PSALTYQI---------------------------ILKL------FVEANKFKEAEEVFM 232 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~--p~~~t~~~---------------------------ll~~------~~~~g~~~~A~~~~~ 232 (599)
...++...+ +..+. |....... .+.. ....+++++|.+.|+
T Consensus 243 a~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 243 AESKAKEIL----ETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred HHHHHHHHH----hcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 112222221 11110 11000000 0110 012367899999999
Q ss_pred HhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH---hcccCCHHHHHHHHHHHHHcC
Q 007543 233 TLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS-TVTYNSL---MSFETNYKEVSKIYDQMQRAG 308 (599)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l---l~~~~~~~~a~~~~~~m~~~g 308 (599)
..++.+. ..+.+...++.+...+...|++++|+..|++..+.. |+ ...|..+ ....+++++|...|+...+..
T Consensus 319 ~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 319 KALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9986421 113345678888999999999999999999998753 43 2233322 234689999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 309 LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388 (599)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 388 (599)
+.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+. .+.+...++.
T Consensus 396 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~ 472 (615)
T TIGR00990 396 -SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNY 472 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHH
Confidence 3467889999999999999999999999999875 556778888999999999999999999998875 2446788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVI------TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
+...+...|++++|.+.|++..+.....+.. .++..+..+...|++++|.+++++..+.. +.+...+..+...
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~ 551 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQL 551 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 9999999999999999999988753221111 12222333445799999999999988653 2335578999999
Q ss_pred HHhcCCHhHHHHHHHHHHhC
Q 007543 463 YGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~ 482 (599)
+.+.|++++|+++|++..+.
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999873
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.8e-15 Score=166.60 Aligned_cols=409 Identities=14% Similarity=0.093 Sum_probs=302.8
Q ss_pred hhHHHHHHHHhhhchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh
Q 007543 71 KNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK 150 (599)
Q Consensus 71 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 150 (599)
.-|..+..-..+..+|..++.... ...+.+..........+...+++..|.++++.+.... +.+...+..+..++..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~-~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYR-VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 457777776677777777776432 2344554445555556678899999999999988765 4567778899999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
.|++++|...+++..+.. +.+.. |..+..++...|++++|+..++++.+..+. +...+..+..++...+..+.|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998873 33666 999999999999999999999999987554 566667788888899999999999
Q ss_pred HHHhHhccCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HH-------HHH
Q 007543 231 FMTLLDEEKSPLKPDQ------KMFHMMIYMYK-----KAGGY---EKARKLFALMAER-GVQQSTV-TY-------NSL 287 (599)
Q Consensus 231 ~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~-------~~l 287 (599)
++.+.. .|+. .....++..+. ..+++ ++|+..++.+.+. ...|+.. .+ ...
T Consensus 173 l~~~~~------~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 173 IDDANL------TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHhCCC------CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 987752 2221 11222233222 22334 7788889888854 2223221 11 111
Q ss_pred hcccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCC
Q 007543 288 MSFETNYKEVSKIYDQMQRAGLQ-PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP---THKAYNILLDAFAISGM 363 (599)
Q Consensus 288 l~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~ 363 (599)
+...+++++|...|+.+.+.+.+ |+. ....+...|...|++++|+.+|+++.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 23458899999999999987632 332 22235778999999999999999987653111 13456667778899999
Q ss_pred HHHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 364 VDQARTVFKCMRRDR-----------CSPD---ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 364 ~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
+++|..+++.+.... -.|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 999999999998752 1123 2345667778999999999999999998765 457888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
..|++++|++.+++..+. .|+ ...+......+.+.|++++|..+++++.+ ..|+......+-..
T Consensus 405 ~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 405 ARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARA 469 (765)
T ss_pred hcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 999999999999999975 455 66777888889999999999999999998 56776654444333
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=7.4e-14 Score=154.29 Aligned_cols=421 Identities=13% Similarity=0.055 Sum_probs=270.1
Q ss_pred HhhhchHHHHHHHhhhcCCCCChHHHHHH--HHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh-cCChHH
Q 007543 80 IEEVGSAVAVLRSERTRGQPLPKDLVLGT--LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK-QGDFNK 156 (599)
Q Consensus 80 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 156 (599)
|.+.+.+..++. ... ..+.|...++.. ...+..+++|+.+.+.+..+.+.+ +.+......|...|.. .++ +.
T Consensus 160 y~q~eqAl~AL~-lr~-~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 160 LAQLPVARAQLN-DAT-FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhhHHHHHHHHH-Hhh-hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HH
Confidence 555566666665 221 222222322222 333556788888888888888876 4555666677778887 466 77
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH--------------------
Q 007543 157 AEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIIL-------------------- 215 (599)
Q Consensus 157 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll-------------------- 215 (599)
|..+++... +.+...+..++..|.+.|+.++|.++++++...-.. |...++.-++
T Consensus 235 a~al~~~~l----k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQGI----FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhchhc----ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 777765422 347888889999999999999999998887543221 2222222211
Q ss_pred ----------HHHH---------------------------------------------------------------HcC
Q 007543 216 ----------KLFV---------------------------------------------------------------EAN 222 (599)
Q Consensus 216 ----------~~~~---------------------------------------------------------------~~g 222 (599)
..+. +.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 1122 234
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHH------------HH----------HHHH-cC
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG---YEKARKL------------FA----------LMAE-RG 276 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~------------~~----------~m~~-~g 276 (599)
+.++|.++|+........+ ..+....+.++..|.+.+. ..+|..+ .. .... .+
T Consensus 391 ~~~~a~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 469 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDA-RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG 469 (987)
T ss_pred cHHHHHHHHHHhcCCCccc-ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc
Confidence 4444444444444321111 1233334455555555544 2222222 00 0000 01
Q ss_pred CCC---CHHHHHHHhc--ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007543 277 VQQ---STVTYNSLMS--FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 351 (599)
Q Consensus 277 ~~~---~~~~~~~ll~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (599)
..| +...|..+-. ..++..+|...+.+.... .|+......+...+.+.|++++|...|+++... +|+...+
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 111 1212211111 124566677766666654 355544444555557889999999999987654 4555566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
..+...+.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...|..+...+.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 677788888999999999999888764 233333334444555669999999999999876 46788899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 007543 432 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 511 (599)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 511 (599)
|++++|...|++..... +.+...+..+..++...|++++|+..+++..+.. |-+...+..+..++...|++++|...+
T Consensus 623 G~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998763 3346688888899999999999999999998832 335567888999999999999999999
Q ss_pred HhccCCCC
Q 007543 512 GNFNHPNN 519 (599)
Q Consensus 512 ~~~~~~~~ 519 (599)
++..+..+
T Consensus 701 ~~Al~l~P 708 (987)
T PRK09782 701 RLVIDDID 708 (987)
T ss_pred HHHHhcCC
Confidence 99765554
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.1e-13 Score=149.94 Aligned_cols=434 Identities=12% Similarity=0.108 Sum_probs=304.2
Q ss_pred hHHHHHHHHhh--hchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHH
Q 007543 72 NWRRLMNQIEE--VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYG 149 (599)
Q Consensus 72 ~~~~~~~~~~~--~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 149 (599)
.|...+..+.+ ...|...|+. ..+..+..+..+...+..+...++..+|..+++...... +........+...|.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~q-aL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQE-ESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH-HHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHH
Confidence 34444444432 3466666663 333334432233344444556788999999888877221 333344445577899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
..|++++|.++|+++.+.... +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999988543 5777888889999999999999999999775 4555556555555555677767999
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH------HHHHhcc--------cCC--
Q 007543 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT------YNSLMSF--------ETN-- 293 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~------~~~ll~~--------~~~-- 293 (599)
.++++++.. +.+...+..+...+.+.|-...|.++..+-... +.+...- ...++.. ..+
T Consensus 191 ~~ekll~~~----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 191 ASSEAVRLA----PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999998753 556778888999999999999998777653321 1111100 1111110 112
Q ss_pred -HHHHHHHHHHHHHc-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 294 -YKEVSKIYDQMQRA-GLQPDV-VS----YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ 366 (599)
Q Consensus 294 -~~~a~~~~~~m~~~-g~~~~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 366 (599)
.+.++.-++.+... +..|.. .. ..-.+-++.+.|++.++++.|+.+...+.+.-..+-..+.++|...++.++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455555655542 222322 22 223455778899999999999999988866556688889999999999999
Q ss_pred HHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-------------CCCHH-HHHHHHHH
Q 007543 367 ARTVFKCMRRDR-----CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-------------VPNVI-TYGTLIKG 427 (599)
Q Consensus 367 A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~li~~ 427 (599)
|..+++++.... ..++......|.-+|...+++++|..+++.+.+... .||-. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999986642 233444467888999999999999999999987321 12222 24456777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNE 506 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 506 (599)
+...|++.+|++.++++.... +-|......+.+.+...|.+.+|++.++.+.. +.|+. .+......++...|++++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHH
Confidence 888999999999999998653 55788999999999999999999999977776 45655 556677788888999999
Q ss_pred HHHHHHhccCCCC
Q 007543 507 ANELLGNFNHPNN 519 (599)
Q Consensus 507 A~~~~~~~~~~~~ 519 (599)
|..+++++....+
T Consensus 503 A~~~~~~l~~~~P 515 (822)
T PRK14574 503 MELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHHHhhCC
Confidence 9999877654444
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=2.6e-13 Score=150.04 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=271.5
Q ss_pred cccchhhHHHHHHHHhhhchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHH
Q 007543 66 DEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLI 145 (599)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 145 (599)
++.++..+..+...+...|...+++.........-|.+..+..+. ..+++++.|.++++.+.+.. +.+...+..+.
T Consensus 74 dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L--a~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la 149 (987)
T PRK09782 74 VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL--AAIPVEVKSVTTVEELLAQQ--KACDAVPTLRC 149 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH--HHhccChhHHHHHHHHHHhC--CCChhHHHHHH
Confidence 344566777777877766644443332111122233333333322 33478888889998888775 45566666666
Q ss_pred HH--------HHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 146 TA--------YGKQGDFNKAEKVLSFMNKKGYAPSVVSHT-ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 146 ~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
.. |.+. ++|.+.++ .......|+..+.. .+.+.|.+.|++++|++++.++.+.++. +..-...+..
T Consensus 150 ~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ 224 (987)
T PRK09782 150 RSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFD 224 (987)
T ss_pred HHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 65 6665 44444444 33322233444444 4488899999999999999999887654 4555666666
Q ss_pred HHHH-cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHhc-----
Q 007543 217 LFVE-ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSLMS----- 289 (599)
Q Consensus 217 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~----- 289 (599)
+|.. .++ +.+..+++.. +..+...+..+++.|.+.|+.++|.++++++...-.. |...+|--++.
T Consensus 225 ay~q~l~~-~~a~al~~~~-------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~ 296 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQG-------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSAN 296 (987)
T ss_pred HHHHhhCH-HHHHHHhchh-------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCc
Confidence 7777 366 7777775432 2467778888888899999999888888876533111 11111111110
Q ss_pred --------------------------------------------------------------------------------
Q 007543 290 -------------------------------------------------------------------------------- 289 (599)
Q Consensus 290 -------------------------------------------------------------------------------- 289 (599)
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 376 (987)
T PRK09782 297 PVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANL 376 (987)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence
Q ss_pred -----------ccCCHHHHHHHHHHHHHc-C-C-----------------------------------------------
Q 007543 290 -----------FETNYKEVSKIYDQMQRA-G-L----------------------------------------------- 309 (599)
Q Consensus 290 -----------~~~~~~~a~~~~~~m~~~-g-~----------------------------------------------- 309 (599)
..|+.++|.++++..... + -
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 012233333333333220 0 0
Q ss_pred ---------------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 310 ---------------QP--DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 310 ---------------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11 22333333333333 5555666666666554 3554443344455567888999988888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 452 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 452 (599)
++... +|+...+..+...+.+.|+.++|...++...+.. +++...+..+...+.+.|++++|...+++..+. .|+
T Consensus 534 ka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~ 608 (987)
T PRK09782 534 KISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APS 608 (987)
T ss_pred HHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC
Confidence 87654 4555566677778888899999999998888764 333444444444555669999999999998865 577
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 453 QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
...|..+..++.+.|++++|+..+++..+. .|+ ...+..+..++...|+.++|...+++..+..+.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888999999999999999999999999884 454 456777778899999999999999987655443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2.8e-12 Score=139.07 Aligned_cols=407 Identities=12% Similarity=0.056 Sum_probs=292.3
Q ss_pred HHHHHHhh---hchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhc
Q 007543 75 RLMNQIEE---VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQ 151 (599)
Q Consensus 75 ~~~~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 151 (599)
.++..+.. ..+|...++... ...+.+..........+...++++.|.++++.+.+.. +.++..+..++..|...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhc
Confidence 44444433 445666665332 2233444444444455677899999999999999876 45677788889999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 231 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 231 (599)
++.++|++.++++... .|+...+-.++..+...++..+|++.++++.+..+. +...+..+..++.+.|-...|.++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999987 456666655555555567776799999999997543 6777888899999999999999876
Q ss_pred HHhHhccCCCCCCCHHHH--HHHHHHHH---------HcCC---HHHHHHHHHHHHHc-CCCCC-HHHHH-------HHh
Q 007543 232 MTLLDEEKSPLKPDQKMF--HMMIYMYK---------KAGG---YEKARKLFALMAER-GVQQS-TVTYN-------SLM 288 (599)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~--~~li~~~~---------~~g~---~~~A~~~~~~m~~~-g~~~~-~~~~~-------~ll 288 (599)
.+-. .-+.+...-+ ...+.-.. ...+ .+.|+.-++.+... +..|. ...|. ..+
T Consensus 227 ~~~p----~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 227 KENP----NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HhCc----cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 6542 1122221111 00111111 1122 34455555665542 22232 22221 123
Q ss_pred cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCC
Q 007543 289 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG-----VRPTHKAYNILLDAFAISGM 363 (599)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~ 363 (599)
...++.+++++.|+.+...+.+....+--.+.++|...+++++|+.+|+++.... ..++......|..+|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 3478999999999999998866566788899999999999999999999997643 12344446789999999999
Q ss_pred HHHHHHHHHHHHhCC-------------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 364 VDQARTVFKCMRRDR-------------CSPDI-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 364 ~~~A~~~~~~m~~~~-------------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
+++|..+++++.+.. ..||- ..+..++..+...|+..+|++.++++.... +-|......+.+.+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~ 461 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 999999999998731 11222 234456678899999999999999998775 559999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 496 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 496 (599)
..|.+.+|++.++..... .|+ ..+....+.++...|++++|..+.+.+.+ ..|+......|-.
T Consensus 462 ~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 462 ARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred hcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 999999999999777644 555 56778888899999999999999999988 5677665444443
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=7.5e-13 Score=137.52 Aligned_cols=402 Identities=13% Similarity=0.148 Sum_probs=278.3
Q ss_pred HHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 007543 110 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-- 187 (599)
Q Consensus 110 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-- 187 (599)
..+...|+++.|...+....+... ....-.+.-|.++|.+.|+++.|...|+...+.. +.+..+...|...|...+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~-d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADN-DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCC-CCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 344556667776666655544331 0112233456777777777777777777776652 334556666666666654
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc-cCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 188 --RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE-EKSPLKPDQKMFHMMIYMYKKAGGYEK 264 (599)
Q Consensus 188 --~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (599)
..++|..++.+..+.- ..|...|..+...+-...-+. ++..|..+++. ...+-.+.....|.+...+...|++++
T Consensus 393 ~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 4566666666665543 235566666655554443333 35555544421 112224666788999999999999999
Q ss_pred HHHHHHHHHHc---CCCCCH-------HHHHH--HhcccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007543 265 ARKLFALMAER---GVQQST-------VTYNS--LMSFETNYKEVSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEE 331 (599)
Q Consensus 265 A~~~~~~m~~~---g~~~~~-------~~~~~--ll~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 331 (599)
|...|+..... -..++. ..||. +....++...|.+.|..+.+.. |. +..|.-+.......+...+
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHH
Confidence 99999988765 122232 23443 2334678899999999999863 43 3334444434444577889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh------------cCC
Q 007543 332 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR-CSPDICSYTTMLSAYVN------------ASD 398 (599)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~------------~g~ 398 (599)
|...+++..... ..++..++.+.+.+.+...+..|..-|+.....- ..+|+.+..+|.+.|.. .+.
T Consensus 549 a~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 549 ASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 999999988765 6677788888889999999999988777665542 23677777777775553 256
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
.++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.. .-+..+|..+.++|...|+|..|++.|+.
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998876 4488888999999999999999999999999763 23556899999999999999999999998
Q ss_pred HHhCCC-CCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 479 MESCGF-PPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 479 m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
..+.-. .-+......|..++.+.|++.+|.+.+.......+.
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 866433 335567888999999999999999998886655443
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.2e-11 Score=117.21 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHhh--hchHHHHHHHhhhcCCCCChHHHHHHHH--HhhhcccHHHHHHHHHHHHHcCC------------
Q 007543 70 KKNWRRLMNQIEE--VGSAVAVLRSERTRGQPLPKDLVLGTLV--RLKQLKKWNVVSEVLEWLRIQSW------------ 133 (599)
Q Consensus 70 ~~~~~~~~~~~~~--~~~a~~~l~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~a~~~~~~~~~~~~------------ 133 (599)
+.+=|.+...+.+ ..++.-+.+.++.++..+++..-...+. .+....+.. ..-.+|......
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~--~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVP--FAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCc--chhHHHHhhccccccccccccccc
Confidence 4555666665543 3456666676777777777654333322 111111111 111122222111
Q ss_pred ---------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007543 134 ---------WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 204 (599)
Q Consensus 134 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 204 (599)
.+-++.+|..+|.++||-...+.|.+++++......+.+..++|.+|.+-.-.. -.++..+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 122334455555555555555555555555544444445555555544322111 1344455555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH----HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 205 RPSALTYQIILKLFVEANKFKEAEE----VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 262 (599)
Q Consensus 205 ~p~~~t~~~ll~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 262 (599)
.||..|+|+++++..+.|+++.|.+ ++.+|. ..|+.|...+|..+|..+++-++.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK---eiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK---EIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH---HhCCCcchhhHHHHHHHhcccCCc
Confidence 5555555555555555554443332 223332 334455555555555555444443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=6.2e-11 Score=112.54 Aligned_cols=398 Identities=14% Similarity=0.123 Sum_probs=269.7
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHH--hcCChH-HHHHHHHHHHhCC----------------
Q 007543 108 TLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYG--KQGDFN-KAEKVLSFMNKKG---------------- 168 (599)
Q Consensus 108 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~-~A~~~~~~m~~~g---------------- 168 (599)
.+.++...+..+.+.-+++.++..+ .+.++..-..|...-+ ...++- .-++-|-.|...|
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~ 199 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLL 199 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHH
Confidence 3445555667777777888887665 3555554444333222 222211 1122233333222
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC
Q 007543 169 ---YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 245 (599)
Q Consensus 169 ---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 245 (599)
.+.+..++..||.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-. ...++..+|+. ..+.||
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis---qkm~Pn 272 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMIS---QKMTPN 272 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHH---hhcCCc
Confidence 13367899999999999999999999999998888888999999998764322 23667777773 456899
Q ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHhcccC----CHHHHHHHHHHHHH----cCCC---
Q 007543 246 QKMFHMMIYMYKKAGGYEK----ARKLFALMAERGVQQSTVTYNSLMSFET----NYKEVSKIYDQMQR----AGLQ--- 310 (599)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~ll~~~~----~~~~a~~~~~~m~~----~g~~--- 310 (599)
..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..++.... ..+.+..+..++.. ..++
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998765 5677888999999999999999887532 22335544444443 2222
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007543 311 -PDVVSYALLINAYGKARREEEALAVFEEMLDAG----VRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD 382 (599)
Q Consensus 311 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 382 (599)
.|...|..-+..|.+..+.+.|.++..-+.... +.|+ .+-|..+....|+....+.-...|+.|.-.-+-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 245667888889999999999998877664321 2233 22467778888999999999999999998888899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CH--------------------HHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NL--------------------EKMMEIY 441 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------------------~~A~~~~ 441 (599)
..+...++.+..-.|.++-.-++|.+++..|...+...-.-++..+++.. .. +....--
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999888775544444444444444433 10 1111112
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHHHHH---HHHHHHhhcCcHHHHHHHHHhcc
Q 007543 442 DKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP-PDQKAKN---ILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 442 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+|.+.. -.....+...-.+.+.|+.++|.+++....+.+-. |-....+ -+.+..........|...++-+.
T Consensus 513 ~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 513 IRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2333333 33455677777788999999999999888654322 2222333 44556667777888887777764
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=2e-12 Score=123.12 Aligned_cols=400 Identities=16% Similarity=0.198 Sum_probs=238.4
Q ss_pred HHHHHHHHhhhc----ccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------H
Q 007543 104 LVLGTLVRLKQL----KKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS------V 173 (599)
Q Consensus 104 ~~~~~l~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~ 173 (599)
.++.++..+... .-..+|+..++.+.+...++.....-..+.+.|.+...+.+|++++...... .|+ +
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~ri 276 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRI 276 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHH
Confidence 345555443322 2345666666666665544332222224556667777777777777665544 233 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc---------CCCCCC
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE---------KSPLKP 244 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~ 244 (599)
...+.+.-.+.+.|++++|+.-|+...+. .|+..+-..|+-++...|+.++..+.|.+++... +..-.|
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 23444445566777777777777766553 3555544444445555666666666666665321 000011
Q ss_pred CHHHHHH---------------------------------------------------------------HHHHHHHcCC
Q 007543 245 DQKMFHM---------------------------------------------------------------MIYMYKKAGG 261 (599)
Q Consensus 245 ~~~~~~~---------------------------------------------------------------li~~~~~~g~ 261 (599)
+....|. -..-|.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1111110 1223566777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH-----hc----------------------------------ccCCHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSL-----MS----------------------------------FETNYKEVSKIYD 302 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~l-----l~----------------------------------~~~~~~~a~~~~~ 302 (599)
++.|.++++-+.+..-+.....-+.| +. +.|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 77777777666543211111111110 00 1245667777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007543 303 QMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD 382 (599)
Q Consensus 303 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 382 (599)
+.....-......|| +.-.+-..|+.++|++.|-++... +..+..+...+.+.|-...+...|++++.+... -++.|
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPND 591 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCC
Confidence 666542211112222 223455667777777777665432 134556666677777777777777777766543 34567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
+.....|...|-+.|+-..|.+.+-+--.. ++-|..+...|...|....-+++++.+|++..- +.|+..-|..++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 788888888888888888888766543332 456778888888888888888888888888763 57898888888765
Q ss_pred H-HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 463 Y-GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 463 ~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
| .+.|++..|..+++...++ ++.|.....-|+..|...| ..++.++-+++.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg-l~d~key~~kle 720 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG-LKDAKEYADKLE 720 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc-chhHHHHHHHHH
Confidence 5 5689999999999888765 6778888888888888777 445555555543
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=5e-11 Score=123.42 Aligned_cols=361 Identities=13% Similarity=0.202 Sum_probs=238.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 225 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 225 (599)
+...-.|++++|.+++.++++... .+...|.+|...|-+.|+.+++...+-..-..++. |...|..+.....+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 333334788888888888777643 36777888888888888888777766554444333 5567777777777778888
Q ss_pred HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-------cCCHHHHH
Q 007543 226 EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-------ETNYKEVS 298 (599)
Q Consensus 226 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-------~~~~~~a~ 298 (599)
+|.-.|.++++.. +++...+-.-+..|-+.|+...|..-|.++.......|..-+..++.. .++-+.|.
T Consensus 225 qA~~cy~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 225 QARYCYSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888777543 556555556667777778888888887777765432222222222221 22335566
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------
Q 007543 299 KIYDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY-------------------------- 351 (599)
Q Consensus 299 ~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------------------------- 351 (599)
+.++..... +-..+...++.++..|.+...++.|......+......+|..-|
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 666555542 12234456778888888888888888887777652222222211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
-.+.-++......+....+........ ..-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 112223333333333333444444444 333556788888999999999999999999887655556778889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhh
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEME--------SCGFPPDQKAKNILLSLAKT 500 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~ 500 (599)
..|.+++|.+.|++.+.. .|+ ...-.+|...+.+.|+.++|.+.+..+. ..+..|+..........+..
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999998864 344 5566778888899999999999998853 23455666666666777888
Q ss_pred cCcHHHHHHHHHhc
Q 007543 501 ADERNEANELLGNF 514 (599)
Q Consensus 501 ~g~~~~A~~~~~~~ 514 (599)
.|+.++-......+
T Consensus 539 ~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 539 VGKREEFINTASTL 552 (895)
T ss_pred hhhHHHHHHHHHHH
Confidence 88887755544443
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1e-09 Score=109.65 Aligned_cols=372 Identities=12% Similarity=0.129 Sum_probs=290.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
..+|..-.+.|.+.+.++-|+.+|....+- ++-+...|...+..--..|..++-..+|++....-+ -....|....+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHH
Confidence 346667778888888889999999888775 344677888887777778888998899999887643 366677777888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHhcccCCH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN---SLMSFETNY 294 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~ll~~~~~~ 294 (599)
+...|+...|..++..+.+.. +.+...|-+-+........++.|..+|.+....+ |+...|. .+....++.
T Consensus 594 ~w~agdv~~ar~il~~af~~~----pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN----PNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC----CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhH
Confidence 888899999999999888643 4567888888888899999999999998887654 4444433 344457889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 295 KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM 374 (599)
Q Consensus 295 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (599)
++|.+++++..+.- +--...|..+...+-+.++++.|...|..-.+. ++..+-.|-.|...--+.|.+-+|..+++..
T Consensus 668 eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 99999998888763 223356788888888889999998888776554 3556667888888888888999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 007543 375 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT 454 (599)
Q Consensus 375 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (599)
..++ +.+...|-..|..-.+.|+.+.|..++.+..+. ++.+...|..-|....+.++-......+++ +.-|+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCch
Confidence 7654 557788999999999999999999998888765 355677788778777777765544444443 345777
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccc
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSI 528 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (599)
+..++...+....+++.|.++|.+..+ +.||. .+|.-+...+.++|.-+.-.++++++....+.-|..|..+
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 888888889999999999999999988 45655 6788889999999999999999999887777777777643
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=4.8e-11 Score=121.57 Aligned_cols=291 Identities=13% Similarity=0.119 Sum_probs=186.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTAL-MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
.|+++.|++.+....+.+ ++...+..+ .....+.|+++.|.+.+.++.+....+...........+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998877652 233333333 45558899999999999999874333222222244678899999999999
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Q 007543 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL 309 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~ 309 (599)
.++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .... ..
T Consensus 175 ~l~~~~~~~----P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~-----------------l~---- 228 (398)
T PRK10747 175 GVDKLLEVA----PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAM-----------------LE---- 228 (398)
T ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHH-----------------HH----
Confidence 999998643 567788899999999999999999999999886543211 1100 00
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... +
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 012223333333334445555555554332 1445666666677777777777777777666653 3444211 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
+.+....++.+++++..+...+.. +-|...+..+...|.+.+++++|.+.|+...+. .|+...+..+..++.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 233334466677777776666553 235555666667777777777777777776653 56666666677777777777
Q ss_pred hHHHHHHHHHH
Q 007543 470 DSAVVWYKEME 480 (599)
Q Consensus 470 ~~A~~~~~~m~ 480 (599)
++|.+++++..
T Consensus 378 ~~A~~~~~~~l 388 (398)
T PRK10747 378 EEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=9e-10 Score=106.10 Aligned_cols=400 Identities=12% Similarity=0.119 Sum_probs=299.9
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.+....|..+++.+...- |--...|.--+.+=-..|++..|+++|+...+. .|+..+|++.|..=.+-..++.|..
T Consensus 120 nk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 120 NKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred hhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 456778888888877653 112234555666667789999999999998885 7999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+|++.+- +.|+..+|.-..+.-.+.|....|..+|+.+++.-. .-..+...+++....-.++..++.|.-+|+-..+
T Consensus 196 IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 196 IYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 679999999999999999999999999999986311 1122344566666666778889999999988876
Q ss_pred cCCCC-CHHHHHHHhcc---cCCHHHHHH--------HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 275 RGVQQ-STVTYNSLMSF---ETNYKEVSK--------IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 342 (599)
Q Consensus 275 ~g~~~-~~~~~~~ll~~---~~~~~~a~~--------~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (599)
.-.+. ....|...... .|+...... -|+.+.+.+ +.|-.+|--.+..-...|+.+...++|++.+..
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 52221 13344444443 444322222 244455543 457778888888888889999999999999876
Q ss_pred CCCCCHH--HHHH--------HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHH
Q 007543 343 GVRPTHK--AYNI--------LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY----VNASDMEGAEKFFRR 408 (599)
Q Consensus 343 g~~~~~~--~~~~--------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~ 408 (599)
++|-.. .|.. .+-.-....+++.+.++|+..++ -++....||.-+--.| .++.++..|.+++..
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 355321 2222 22222356889999999999887 4566667766555444 467899999999998
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC
Q 007543 409 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPPD 487 (599)
Q Consensus 409 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 487 (599)
.+ |..|-..+|...|..=.+.++++.+.++|++.++.+ +-|-.+|......=...|+.+.|..+|.-+++.. +...
T Consensus 430 AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 430 AI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred Hh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 76 568999999999999999999999999999999874 4457799999988899999999999999998743 2223
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccc
Q 007543 488 QKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSI 528 (599)
Q Consensus 488 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (599)
...|.+.++.-...|.++.|+.+++.+.+...... .|++.
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 35688888888899999999999999876655433 55544
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=3.4e-11 Score=123.36 Aligned_cols=293 Identities=13% Similarity=0.114 Sum_probs=161.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 149 GKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
...|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.+.+..+..+.+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35788999999988877763 44 3344455677778899999999998887654343333444457778888999999
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHc
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA 307 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~ 307 (599)
.+.++.+.+.. +.+..++..+...|.+.|++++|.+.+..+.+.+..+.. .+..+-.
T Consensus 173 l~~l~~l~~~~----P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------ 229 (409)
T TIGR00540 173 RHGVDKLLEMA----PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------ 229 (409)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------
Confidence 99988887643 556677888888889999999998888888876532111 1100000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 308 GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG---VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC 384 (599)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (599)
..+..+ ...+..+++...+..+.+.. .+.+...+..+...+...|+.++|.+++++..+. .||..
T Consensus 230 ------~a~~~~----l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~ 297 (409)
T TIGR00540 230 ------KAEIGL----LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDR 297 (409)
T ss_pred ------HHHHHH----HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcc
Confidence 001111 11111112222222222221 0125555666666666666666666666666554 22222
Q ss_pred H---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 007543 385 S---YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV--ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 459 (599)
Q Consensus 385 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (599)
. ...........++.+.+.+.+++..+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1 0111111222344555555555544432 1122 33445555555555555555555532222234555555555
Q ss_pred HHHHHhcCCHhHHHHHHHHH
Q 007543 460 MDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m 479 (599)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.5e-10 Score=120.83 Aligned_cols=395 Identities=15% Similarity=0.102 Sum_probs=256.3
Q ss_pred HhhhcccHHHHHHHHHHHHHcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 111 RLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 189 (599)
Q Consensus 111 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 189 (599)
.+-.-+++..+..+.+.+...... ..-...|..+..+|-..|++++|.+.|.+..+....--+..+.-|.+.|.+.|++
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence 344446777777776666553311 1123457778888888888888888887666553211134455677778888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 190 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN----KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 190 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
+.+...|++..+.. +-+..|...|...|...+ ..+.|..+..+..+. .+.|...|-.+...|-...-+ .+
T Consensus 359 e~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~----~~~d~~a~l~laql~e~~d~~-~s 432 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ----TPVDSEAWLELAQLLEQTDPW-AS 432 (1018)
T ss_pred HHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHhcChH-HH
Confidence 88888888877653 225566666766666664 456666666666542 255666777776666554333 33
Q ss_pred HHHHHHHH----HcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCCH
Q 007543 266 RKLFALMA----ERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRA---GLQPDV------VSYALLINAYGKARRE 329 (599)
Q Consensus 266 ~~~~~~m~----~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~ 329 (599)
+.+|.... ..+..+.....|.+-+. .|.+..|...|+..... ...+|. .+--.+...+-..++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 55555443 33444555555554432 46777777777666554 112222 1222344455566677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 330 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (599)
+.|.+.|..+.+.. +.-+..|..+.-+....+...+|...++..... ...++..++.+...+.+...+..|.+-|+..
T Consensus 513 ~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 88888888877652 222333444443333446778888888887663 3456666666777888888888888877766
Q ss_pred hhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 410 KQD-GFVPNVITYGTLIKGYAK------------VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 410 ~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
.+. ...+|..+.-+|.+.|.. .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 532 224687877777776653 234688999999988764 446667788888899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 477 KEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 477 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+..+.. .-...+|..+..+|..+|++..|.++++...
T Consensus 670 sqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 670 SQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998754 3345668889999999999999999999854
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=5.4e-11 Score=121.20 Aligned_cols=283 Identities=13% Similarity=0.121 Sum_probs=214.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH--HHHHHHHHcCCHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--MMIYMYKKAGGYE 263 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~ 263 (599)
.|++++|.+.+....+....| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHCCCHH
Confidence 689999998877765542222 223444445557889999999999988753 44443322 3366788888999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 264 KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 264 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+
T Consensus 171 ~Al~~l~~~~~~~---------------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 171 AARHGVDKLLEVA---------------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 8888888877652 3356778888999999999999999999999887
Q ss_pred CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 007543 344 VRPTH-------KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 416 (599)
Q Consensus 344 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 416 (599)
..++. .+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|.+++++..+. .|
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 44322 13334444444555666777777776543 3457888999999999999999999999998874 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 496 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 496 (599)
+.... ++.+....++.+++.+..+...+.. +-|...+.++...|.+.|++++|.+.|+.+.+ ..|+..++..+..
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLAD 369 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHH
Confidence 65322 3344446699999999999998763 34466788999999999999999999999998 6899999999999
Q ss_pred HHhhcCcHHHHHHHHHhcc
Q 007543 497 LAKTADERNEANELLGNFN 515 (599)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~~ 515 (599)
++.+.|+.++|.+++++-.
T Consensus 370 ~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999753
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.2e-10 Score=111.82 Aligned_cols=362 Identities=14% Similarity=0.129 Sum_probs=253.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIIL 215 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll 215 (599)
|+..+....-.+.+.|....|...|-..... .+-.-.+|-.|..... +. ++.......++. .....=-.+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHhcCcccchHHHHHHHH
Confidence 3444445556677888889999988887764 2223444544443332 22 222222222111 1111112345
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHhcccCC
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV--QQSTVTYNSLMSFETN 293 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~ 293 (599)
.++....+.+++.+-..... ..|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~---~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLS---SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 56777778888888777776 345555555555555666778899999999999987632 1256677776655443
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKC 373 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (599)
-.+..-+-...... -+--+.|+..+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|+.-++.
T Consensus 312 ~skLs~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hHHHHHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22222222222211 12234577788888999999999999999999876 56677899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 007543 374 MRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ 453 (599)
Q Consensus 374 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 453 (599)
.++-. +.|-..|..|..+|.-.+...-|+-+|++..+.. +-|...|.+|.++|.+.++.++|++.|......| ..+.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 98753 6688999999999999999999999999998864 4488999999999999999999999999998765 3466
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCCHHHHHH---HHHHHhhcCcHHHHHHHHHhcc
Q 007543 454 TIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPDQKAKNI---LLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~---ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
..+..|...|-+.++.++|...+++-++ .|. .+..|..+ |..-+.+.+++++|..+.....
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~-~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE-IDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8999999999999999999999988764 342 23323222 3355677888888877665543
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3.6e-14 Score=138.02 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=64.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKG-YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 221 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 221 (599)
.+...+.+.|++++|++++++..... .+.+...|..+...+...+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555555555666665554332221 1223344444444455555555555555555544322 33344444444 455
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHH
Q 007543 222 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIY 301 (599)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~ 301 (599)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+....
T Consensus 91 ~~~~~A~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------------------------- 140 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP------------------------- 140 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------------------------
T ss_pred cccccccccccccccc-----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-------------------------
Confidence 5555555555444321 1233344444555555555555555554443210
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007543 302 DQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 381 (599)
Q Consensus 302 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 381 (599)
..+.+...|..+...+.+.|+.++|++.+++.++.. +.|....+.++..+...|+.+++..+++...+.. +.
T Consensus 141 ------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 141 ------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp ---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 012344445555555555555555555555555542 2234455555555555555555555555444332 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 444 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (599)
|+..+..+..+|...|+.++|+..|++..+.. +.|......+.+++...|+.++|.++.++.
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 33344445555555555555555555544432 224444445555555555555555554443
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=8.1e-11 Score=120.56 Aligned_cols=286 Identities=13% Similarity=0.085 Sum_probs=205.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH--HHHHHHHHHHHHcCCH
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ--KMFHMMIYMYKKAGGY 262 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 262 (599)
..|+++.|.+.+.+..+.... ....+.....+....|+.+.|.+.+.+..+. .|+. .+.-.....+...|++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHHHCCCH
Confidence 578999999998887765432 2334455567778889999999999888642 2332 2344457778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 263 EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 342 (599)
Q Consensus 263 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (599)
+.|...++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.
T Consensus 170 ~~Al~~l~~l~~~~---------------------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 170 HAARHGVDKLLEMA---------------------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 88888888877652 235667888999999999999999999999988
Q ss_pred CCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 007543 343 GVRPTHKAYN-ILLDAF---AISGMVDQARTVFKCMRRDR---CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFV 415 (599)
Q Consensus 343 g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 415 (599)
+.. +...+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+.+++..+..
T Consensus 217 ~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-- 293 (409)
T TIGR00540 217 GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-- 293 (409)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Confidence 743 333332 111221 23333333344555544432 12378889999999999999999999999999864
Q ss_pred CCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-H--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 416 PNVIT---YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-Q--TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 416 p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
||... ...........++.+.+.+.+++..+. .|+ . ....++.+.+.+.|++++|.+.|+........|+..
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 33331 111222223457888999999888865 344 4 567899999999999999999999543333689999
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 490 AKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 490 ~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.+..+...+.+.|+.++|.+++++.
T Consensus 372 ~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 372 DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999984
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=5.7e-14 Score=136.59 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAG-VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 393 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 393 (599)
.+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++..+.. +.|....+.++..+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLL 190 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34444444555555555555555543321 12344444445555555555555555555544431 11234444444444
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHH
Q 007543 394 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (599)
...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|++..+.. +.|..+...+.+++...|+.++|.
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 44455444444444443322 2233334444444444455555555555444321 223444444444455555555554
Q ss_pred HHHHHH
Q 007543 474 VWYKEM 479 (599)
Q Consensus 474 ~~~~~m 479 (599)
++.++.
T Consensus 269 ~~~~~~ 274 (280)
T PF13429_consen 269 RLRRQA 274 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 444443
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=4.6e-12 Score=127.06 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=170.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---H
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS---Y 386 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~ 386 (599)
+-.+.+|.++.++|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|+|...|+..... |+.. |
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAw 492 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAW 492 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHH
Confidence 3457899999999999999999999999999864 447889999999999999999999999988753 5544 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 466 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (599)
.-+...|.+.++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.|+|++++++....+ +-|+..--.-+..+...
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhh
Confidence 556668999999999999999999877 4478888889999999999999999999998654 22444444455667789
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCc
Q 007543 467 KDFDSAVVWYKEMESCGFPPDQKA-KNILLSLAKTADERNEANELLGNFNHPNNEPGI 523 (599)
Q Consensus 467 g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 523 (599)
+++++|+..++++.+ +.|+..+ +..+...|.+.|+.+.|..-+.-+.+.++++.-
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999998 6777754 667778999999999999988887666665443
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=5.8e-11 Score=109.04 Aligned_cols=291 Identities=16% Similarity=0.173 Sum_probs=161.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
..+.++|.++|-+|.+.... +..+-.+|.+.|-+.|..|.|++++..+++.....+..-......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34555666666666543221 33344455555666666666666666655421111111122334455566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (599)
+.+|..+.+.+ .--......|+..|-+..+|++|+++-+++.+.+-.
T Consensus 127 E~~f~~L~de~---------------------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 127 EDIFNQLVDEG---------------------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHhcch---------------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 66666665431 011223445666666677777777777666665433
Q ss_pred CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007543 346 PTHK----AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 421 (599)
Q Consensus 346 ~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 421 (599)
+..+ .|.-|...+....+++.|..++.+..+.. +..+..-..+...+...|+++.|.+.|+...+.+..--..+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 3322 34455555555667777777777766542 222333334445677777777777777777776544445566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--
Q 007543 422 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK-- 499 (599)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 499 (599)
..|..+|.+.|+.++....+.++.+... ....-..+...-....-.+.|..++.+-+. -.|+...+..|+..-.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhcc
Confidence 7777778888888888877777776532 333333333333333334555555544444 3677777777776532
Q ss_pred -hcCcHHHHHHHHHhcc
Q 007543 500 -TADERNEANELLGNFN 515 (599)
Q Consensus 500 -~~g~~~~A~~~~~~~~ 515 (599)
..|...+-..++++|.
T Consensus 329 aeeg~~k~sL~~lr~mv 345 (389)
T COG2956 329 AEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccchhhhHHHHHHHH
Confidence 2344555555555554
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=1.2e-09 Score=113.47 Aligned_cols=360 Identities=15% Similarity=0.134 Sum_probs=266.4
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
..|+..+|.+++..++++. +.+...|..|..+|-..|+.+++...+-..-.... .|...|..+.....+.|.++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHH
Confidence 3489999999999999987 56788999999999999999999998877766643 37799999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF----HMMIYMYKKAGGYEKARKLF 269 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~ 269 (599)
-.|.+.++..+. +...+---...|-+.|+...|..-|.++.... + +.|..-+ -.+++.|...++-+.|.+.+
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLD--P-PVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--C-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999987543 55555566778999999999999999998642 1 2222222 33466777788889999999
Q ss_pred HHHHHcC----CCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHH--------------------------HHH
Q 007543 270 ALMAERG----VQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSY--------------------------ALL 319 (599)
Q Consensus 270 ~~m~~~g----~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~--------------------------~~l 319 (599)
+.....+ --|+..++..|+-....++.+......+.....++|..-+ .-+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 8887632 2245556666666667777777766666552222222111 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVR--PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 397 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 397 (599)
+-++...+..+....+...+.+..+. -+...|.-+..+|...|++.+|+.+|..+......-+...|--+..+|-..|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 33444555555555555556555533 3455788999999999999999999999988755556788999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCcCHHHHHHHHHHHHhcCCH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV--------NGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
..++|.+.|+..+... +-+...-..|...+.+.|+.++|.+.+..+.. .+..|+..+.-...+.+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999998764 33555666777888999999999999998641 23445555556667778888888
Q ss_pred hHHHHHHHHHHh
Q 007543 470 DSAVVWYKEMES 481 (599)
Q Consensus 470 ~~A~~~~~~m~~ 481 (599)
++=+.....|+.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 876655555543
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=2.5e-10 Score=109.07 Aligned_cols=215 Identities=13% Similarity=0.178 Sum_probs=171.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc--ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 258 KAGGYEKARKLFALMAERGVQQSTVTYNSLMS--FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV 335 (599)
Q Consensus 258 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (599)
..|++++|.+.|++.....-......||.-+. ..|++++|+..|-.+... +..+..+...+.+.|-...+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 36789999999999987644444445555444 378999999998877653 234677788889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 007543 336 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFV 415 (599)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 415 (599)
+.+.... ++.|+...+-|.+.|-+.|+-..|.+.+.+--+. ++-+..+...|...|....-+++++.+|++..- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 9887654 5778899999999999999999999887655432 456788888899999999999999999998754 58
Q ss_pred CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 416 PNVITYGTLIKGYA-KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 416 p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|+..-|..++..|. +.|++++|.++|+..... ++.|..+..-|++.+...|- .++.++-+++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 99999998886665 689999999999998764 67788899999998888774 4455554444
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.7e-10 Score=103.82 Aligned_cols=304 Identities=15% Similarity=0.133 Sum_probs=215.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIIL 215 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll 215 (599)
.+|..=++.+. ..+.++|.++|-+|.+... -+..+.-+|.+.|.+.|..|.|+++...+.++---+. ......|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34444444443 5688999999999998642 2566778899999999999999999998876522111 22445567
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 295 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 295 (599)
.-|...|-+|.|+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+.+..+..+-
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------ 178 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------ 178 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH------------
Confidence 77899999999999999998532 23345678899999999999999999888877643332111
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
-...|.-|...+....+.+.|..++.+..+.+ +..+..--.+.+.+...|++..|.+.++...
T Consensus 179 ----------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 179 ----------------IAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred ----------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 12345566666677778888888888887765 4444455566777888899999999998888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 007543 376 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 376 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
+.+..--..+...|..+|.+.|+.++...++.++.+... ....-..+.+.-....-.+.|..++.+-... +|+...
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~g 317 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRG 317 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHH
Confidence 774433445677788889999999999998888887643 3333334444444445566666666665544 688888
Q ss_pred HHHHHHHHHh---cCCHhHHHHHHHHHHh
Q 007543 456 FTTIMDAYGK---NKDFDSAVVWYKEMES 481 (599)
Q Consensus 456 ~~~li~~~~~---~g~~~~A~~~~~~m~~ 481 (599)
+..+++.-.. .|...+-+..++.|..
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 8888887643 3456666777777754
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=1.7e-08 Score=101.15 Aligned_cols=399 Identities=12% Similarity=0.077 Sum_probs=203.2
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSF----MNKKGYAPSVVSHTALMEAYGRGG 187 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g 187 (599)
+..+..|..|..++..+++. ++.+...|.+-...=-..|+.+...++.++ +...|+.-+...|-.=...|-..|
T Consensus 416 larLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 33445566666676666654 345556666555555566676666666654 334555556666666555665666
Q ss_pred CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPRP--SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
..-.+..+....+..|++- -..||..-...|.+.+.++-|..+|...++. ++.+...|...+..--..|..++-
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv----fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV----FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHhcCcHHHH
Confidence 6555555555555555432 1235555555555555555555555555432 234444555555444445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhc----ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMS----FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
..+|.+.... .|....+-.|.. ..|+...|..++.+..+.... +...|..-+........++.|..+|.+...
T Consensus 570 ~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 570 EALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 5555555433 121111111111 134444555555444443321 334444444444444555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------------------------CCCCCHHHHHH
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD---------------------------------RCSPDICSYTT 388 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------~~~p~~~~~~~ 388 (599)
. .|+...|.--+...--.++.++|++++++..+. .++..+..|-.
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 2 334444433333333344444444444444432 12223334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 468 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (599)
+...--+.|.+-.|..++++..-.+. -|...|-..|.+=.+.|+.+.|..+..+..+. ++.+...|..-|....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 44444444555555555555544432 24455555555555555555555555554432 23334455555555544444
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccc
Q 007543 469 FDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSI 528 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (599)
-......+++ +.-|+...-++...+....+++.|+..+.+..+.++.-|-.|...
T Consensus 803 kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 803 KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 3333333322 234555556666777788899999999999887777777666544
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.9e-09 Score=102.56 Aligned_cols=291 Identities=18% Similarity=0.195 Sum_probs=189.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
.++-...+.++++.=.+.....|..-+...-+....+.-...++++|+.+|+.+.+.+... -.|..+|+.++- .+..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-l~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-LDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-chhHHHHhHHHH--HHhh
Confidence 3444444556666655555555554444433334444445556666666666665432111 124455555442 2222
Q ss_pred CHHH---HHHHHHHHHHcCCCCCHHH-HHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 261 GYEK---ARKLFALMAERGVQQSTVT-YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF 336 (599)
Q Consensus 261 ~~~~---A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (599)
+-.- |..++ .-...+|.+.+ ...-.+..+..+.|...|+...+.+ +.....|+.+..-|....+...|+.-+
T Consensus 312 ~skLs~LA~~v~---~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 KSKLSYLAQNVS---NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hHHHHHHHHHHH---HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1111 11111 11112222111 0001111234556666666666654 234567899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 007543 337 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 416 (599)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 416 (599)
+..++.. +.|-..|-.|.++|.-.+...-|+-.|++...-. +-|...|.+|..+|.+.++.++|++.|++....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999886 7788999999999999999999999999988753 5588999999999999999999999999999877 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPNQT--IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+...|..|.+.|-+.++.++|.+.|.+-++ .|..-+.. .-.-|..-+.+.+++++|..+......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 778999999999999999999999988764 23222211 222244556778888887766555443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.2e-11 Score=121.10 Aligned_cols=281 Identities=13% Similarity=0.100 Sum_probs=203.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 153 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
+..+|...|+++++.- .-+......+.++|...+++++|.++|+.+.+..+- -+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4577888888866652 223455566778888888888888888888765321 255667666543322 112222
Q ss_pred H-HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Q 007543 231 F-MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL 309 (599)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~ 309 (599)
+ +.+++.+ +-.+.+|-++.++|.-+++.+.|++.|++..+.
T Consensus 409 Laq~Li~~~----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---------------------------------- 450 (638)
T KOG1126|consen 409 LAQDLIDTD----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---------------------------------- 450 (638)
T ss_pred HHHHHHhhC----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----------------------------------
Confidence 2 2222221 445668888888888888888888888877764
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 310 QP-DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388 (599)
Q Consensus 310 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 388 (599)
.| ...+|+.+..-+.....+|.|...|+..+... +.+-..|-.|.-.|.+.++++.|.-.|++..+-+ +-+.+....
T Consensus 451 dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~ 528 (638)
T KOG1126|consen 451 DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCH 528 (638)
T ss_pred CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhh
Confidence 34 67788888888888889999999999887543 2233455566778899999999999999888653 345667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNK 467 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g 467 (599)
+...+-+.|+.++|+.+++++.....+ |+..--..+..+...+++++|+..++++.+. .|+ ..+|-.+...|.+.|
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHc
Confidence 778888999999999999998876644 5544445566677789999999999999864 455 668888889999999
Q ss_pred CHhHHHHHHHHHHh
Q 007543 468 DFDSAVVWYKEMES 481 (599)
Q Consensus 468 ~~~~A~~~~~~m~~ 481 (599)
+.+.|+.-|--|.+
T Consensus 606 ~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 606 NTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHhhHHHhc
Confidence 99999998888877
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=1.6e-09 Score=102.76 Aligned_cols=292 Identities=15% Similarity=0.176 Sum_probs=200.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
.|++.+|++...+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+.-..++...+..........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 79999999999998888654 35566677788888999999999999998864466777778888889999999999999
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCC
Q 007543 231 FMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ 310 (599)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~ 310 (599)
..++.+.. +.+..+......+|.+.|++.....++.++.+.|.-.+... .++
T Consensus 176 v~~ll~~~----pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~------------------~~l------ 227 (400)
T COG3071 176 VDQLLEMT----PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA------------------ARL------ 227 (400)
T ss_pred HHHHHHhC----cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH------------------HHH------
Confidence 99998654 66778889999999999999999999999998876444321 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
...+|..+++-....+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++.++..+++..|...+ .
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----H
Confidence 1234555555555444444444455544332 244555556666667777777777777776666655444211 2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHh
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (599)
-.+.+-++.+.-.+..+...+.. +-++..+..|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 23445556655555555544322 223356666777777777777777777765543 566777777777777777777
Q ss_pred HHHHHHHHHH
Q 007543 471 SAVVWYKEME 480 (599)
Q Consensus 471 ~A~~~~~~m~ 480 (599)
+|.+..++..
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2e-08 Score=97.02 Aligned_cols=384 Identities=14% Similarity=0.138 Sum_probs=288.0
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.++...|..+++.+.... .-+...|.--+.+=.++..++.|+.+|+..... .+.-...|..-+..=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 356677888988887654 234455667788888999999999999998875 22234467777777777899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+|++..+ ..|+...|.+.++.-.+.+.++.|..++++.+- +.|++..|--.+..--++|+...|..+|....+
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----VHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999877 689999999999999999999999999999873 469999999999999999999999999998875
Q ss_pred c-CCC-CCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCH---HHHHHH-----HHHH
Q 007543 275 R-GVQ-QSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPD--VVSYALLINAYGKARRE---EEALAV-----FEEM 339 (599)
Q Consensus 275 ~-g~~-~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~---~~A~~~-----~~~m 339 (599)
. |-. -+...+.+.-. .+..++.|.-+|+-.+..- +.+ ...|......--+-|+. ++++-- ++.+
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 3 110 01122222222 2566778888888877752 223 34455555444455554 343322 3444
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH--------HHHHhcCCHHHHHHHHHHH
Q 007543 340 LDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI--CSYTTML--------SAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 340 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li--------~~~~~~g~~~~A~~~~~~m 409 (599)
++.+ +.|-.+|--.+..-...|+.+...++|+..+.. ++|-. ..|.-.| -.-....+.+.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5554 567778888888888889999999999999874 45522 1121111 1123568999999999998
Q ss_pred hhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 007543 410 KQDGFVPNVITYGTLIKGYA----KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 485 (599)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 485 (599)
++. ++....||.-+--.|+ ++.++..|.+++...+ |.-|-..+|...|..=.+.++++.+.+++++.++.+ |
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-P 468 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-P 468 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-h
Confidence 884 4556677766555554 6789999999999988 778999999999999999999999999999999954 4
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 486 PDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 486 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
-+..+|.-....-...|+.+.|+.++.-..
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 455789888888889999999999999865
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.3e-09 Score=102.80 Aligned_cols=383 Identities=15% Similarity=0.121 Sum_probs=250.2
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFN-EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYK 190 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 190 (599)
-+.+.+++|.+.+.|+.+.. ++ +..|.....+|...|+|++..+--.+..+. .|+ +..+..-.+++-+.|+++
T Consensus 126 f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHH
Confidence 34567888888888888765 44 677778888888888888888887777775 344 446666677777778887
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH------------
Q 007543 191 NAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK------------ 258 (599)
Q Consensus 191 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------ 258 (599)
+|+.=..-..-.+--.|..+-..+=+.+- ..|....++-...++..+-|.....++....+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 77653322211111112221111111111 1122222222222233344443333333222211
Q ss_pred -------------cC---CHHHHHHHHHHHHHc-CCCCCHH---------HHHHHhc-----ccCCHHHHHHHHHHHHHc
Q 007543 259 -------------AG---GYEKARKLFALMAER-GVQQSTV---------TYNSLMS-----FETNYKEVSKIYDQMQRA 307 (599)
Q Consensus 259 -------------~g---~~~~A~~~~~~m~~~-g~~~~~~---------~~~~ll~-----~~~~~~~a~~~~~~m~~~ 307 (599)
.+ .+.+|...+.+-... ...++.- .-..++. ..|+...+..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122222222211100 0001100 1111121 157888888899998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007543 308 GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYT 387 (599)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 387 (599)
...++. .|.-+..+|....+.++....|++..+.+ +-++.+|..-..++.-.+++++|..-|++.+... +-+...|.
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~i 432 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYI 432 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHH
Confidence 544333 37778889999999999999999998876 5677788888888888899999999999988753 33556777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-------HH--HHHH
Q 007543 388 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-------QT--IFTT 458 (599)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~--~~~~ 458 (599)
.+..+..+.+.++++...|++.++. ++-.+..|+.....+...+++++|.+.|+..++. .|+ .. +...
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhh
Confidence 7777888999999999999999875 4557889999999999999999999999998853 333 21 2222
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 459 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
++- +.-.+++..|.+++.+..+ +.|.. ..+..|...-.+.|+.++|.+++++.
T Consensus 510 ~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 510 LLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred Hhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 2234899999999999988 55654 56889999999999999999999884
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=1.2e-08 Score=97.00 Aligned_cols=285 Identities=15% Similarity=0.140 Sum_probs=226.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
.|++.+|.++..+-.+.+..| ...|..-..+.-..|+.+.+..++.++-+. .-.++....-+........|+++.|
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchhH
Confidence 789999999999987776553 445667777888899999999999998742 1245566677778888888999998
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (599)
..-++++.+.+ +-+.........+|.+.|++.....+...+.+.|.-
T Consensus 173 ~~~v~~ll~~~---------------------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 173 RENVDQLLEMT---------------------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred HHHHHHHHHhC---------------------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 88877776642 235667788889999999999999999999999866
Q ss_pred CCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 007543 346 PTHK-------AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 418 (599)
Q Consensus 346 ~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 418 (599)
.+.. +|+.+++-....+..+.-...+++.... ...++..-.+++.-+...|+.++|.++.++..+.+..|+.
T Consensus 220 ~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 220 SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 5543 5777777776666666666677766543 3456777788899999999999999999999988766662
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
...-.+.+-++.+.-.+..++-.+. .+-++..+.+|...|.+++.|.+|...|+...+ ..|+..+|..+..++
T Consensus 299 ----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~ 371 (400)
T COG3071 299 ----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADAL 371 (400)
T ss_pred ----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHH
Confidence 2233456677887777777776643 233457899999999999999999999998888 689999999999999
Q ss_pred hhcCcHHHHHHHHHhcc
Q 007543 499 KTADERNEANELLGNFN 515 (599)
Q Consensus 499 ~~~g~~~~A~~~~~~~~ 515 (599)
.+.|+..+|.+..++..
T Consensus 372 ~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 372 DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHcCChHHHHHHHHHHH
Confidence 99999999999888754
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=9.2e-09 Score=99.82 Aligned_cols=356 Identities=13% Similarity=0.074 Sum_probs=239.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA-LTYQIILKLFVE 220 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~ 220 (599)
...+-|.+.|++++|++.+...++. .|+ .+-|.....+|...|+++++.+.-.+.++. .|+- ..+.--.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 4567788999999999999999987 567 888999999999999999999988888774 4442 244445566777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHH-c--CCCCCHHHHHHHhc
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFA--------LMAE-R--GVQQSTVTYNSLMS 289 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~-~--g~~~~~~~~~~ll~ 289 (599)
.|++++|+.-..- ..+..++-...-.-.+.++++ +-.+ . .+.|+....++...
T Consensus 196 lg~~~eal~D~tv----------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 196 LGKFDEALFDVTV----------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred hccHHHHHHhhhH----------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 7888777643221 122222222222222222222 2112 1 23355544444443
Q ss_pred cc----------------CCHHHHHHHH------------HHHHHc------CCCCC---------HHHHHHHHHHHHhc
Q 007543 290 FE----------------TNYKEVSKIY------------DQMQRA------GLQPD---------VVSYALLINAYGKA 326 (599)
Q Consensus 290 ~~----------------~~~~~a~~~~------------~~m~~~------g~~~~---------~~~~~~li~~~~~~ 326 (599)
.. ....++.+.+ +.+.+. ....+ ..+.......+.-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 10 0111222211 111110 01111 11222222334556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 327 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFF 406 (599)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 406 (599)
|+.-.|..-|+..+..... +...|--+..+|....+.++....|++..+.. +-|+.+|..-...+.-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 8888999999999887533 33337778888999999999999999988764 446677777778888889999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 007543 407 RRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 486 (599)
Q Consensus 407 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 486 (599)
++.+... +-+...|-.+.-+..+.+++++++..|++..+. ++--+.+|+-....+...++++.|.+.|+..++ +.|
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~ 493 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEP 493 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hcc
Confidence 9998875 337778888888888999999999999999875 444578999999999999999999999999987 445
Q ss_pred C-------HHH--HHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCccc
Q 007543 487 D-------QKA--KNILLSLAKTADERNEANELLGNFNHPNNEPGING 525 (599)
Q Consensus 487 ~-------~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 525 (599)
+ ..+ ..+++-.-. .+++..|..++++..+.+++-....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHH
Confidence 4 222 222332222 3889999999999877777654443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1e-09 Score=103.39 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
....+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667888899999999999999999998764 4567788889999999999999999999988764 446677888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHh
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (599)
.+...|++++|.+.+++...... ......+..+...+...|++++|.+.+.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999886432 2245567778889999999999999999988653 334668888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 471 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 471 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+|..++++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999875 34556667777888889999999999887764
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=4.5e-09 Score=111.98 Aligned_cols=162 Identities=10% Similarity=0.021 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTML 390 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li 390 (599)
+...+..+...+...|++++|...|++.++.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~ 413 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKL 413 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHH
Confidence 34455555555666666666666666666553 3344555666666666666666666666665542 22 22222333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 469 (599)
..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++... .|+ ....+.+...|+..|
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--
Confidence 345556666666666666554321113444555566666666666666666665432 233 223444444555555
Q ss_pred hHHHHHHHHHH
Q 007543 470 DSAVVWYKEME 480 (599)
Q Consensus 470 ~~A~~~~~~m~ 480 (599)
+.|...++++.
T Consensus 490 ~~a~~~l~~ll 500 (553)
T PRK12370 490 ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHH
Confidence 35555555554
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=3.1e-09 Score=100.10 Aligned_cols=201 Identities=16% Similarity=0.109 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007543 245 DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG 324 (599)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 324 (599)
....+..+...|...|++++|...+++..+.. +.+...+..+...|.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---------------------------------p~~~~~~~~la~~~~ 76 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD---------------------------------PDDYLAYLALALYYQ 76 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------cccHHHHHHHHHHHH
Confidence 34567777788888888888888877765431 223456677777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDICSYTTMLSAYVNASDMEGAE 403 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~ 403 (599)
..|++++|.+.+++..+.. +.+...+..+...+...|++++|...|++...... ......+..+...+...|++++|.
T Consensus 77 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887764 44566777778888888888888888888776422 223456666777888889999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 404 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 156 KYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9988887754 335667888888888899999999999888765 244566777778888888999999888887765
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.31 E-value=1.1e-07 Score=95.77 Aligned_cols=396 Identities=14% Similarity=0.153 Sum_probs=222.7
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 106 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185 (599)
Q Consensus 106 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 185 (599)
+..+.++-..+++...+.+.+.+.+. ++--..+.....-.+...|+-++|......-....+. +.+.|..+.-.+..
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33344444445566666655555542 2223344444444555667777777666655554333 66677777666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
..++++|+..|......+.. |...+.-+.-.-++.++++.....-..+++.. +.....|..++-++.-.|++..|
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~----~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR----PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777665432 55555555555556666666666655555421 33445566666666667777777
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHhc---------ccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 007543 266 RKLFALMAERG-VQQSTVTYNSLMS---------FETNYKEVSKIYDQMQRAGLQPDVVS-YALLINAYGKARREEEALA 334 (599)
Q Consensus 266 ~~~~~~m~~~g-~~~~~~~~~~ll~---------~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~ 334 (599)
..+++...+.. -.|+...+.-... -.|..++|.+.+..-...- .|... --+-...+.+.+++++|..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 77776666543 2334333322211 1344455554444333221 12222 2233455666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHH----------------------------------HHHHhCC
Q 007543 335 VFEEMLDAGVRPTHKAYNILLD-AFAISGMVDQAR-TVF----------------------------------KCMRRDR 378 (599)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~-~~~----------------------------------~~m~~~~ 378 (599)
++..++.. .||..-|...+. ++.+-.+.-++. .+| ..+.+.|
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 77777665 455554443333 222222222222 333 3333344
Q ss_pred CCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHhhCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 007543 379 CSPDICSYTTMLSAYVNASDME----GAEKFFRRLKQDG----------FVPNVI--TYGTLIKGYAKVNNLEKMMEIYD 442 (599)
Q Consensus 379 ~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~ 442 (599)
+++- +..+.+-|-.....+ -+..+...+...| -+|... ++-.++..|-+.|+++.|..+++
T Consensus 319 ~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3322 222222221111111 1111111111111 134444 44567888899999999999999
Q ss_pred HHHHCCCCcCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 443 KMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 443 ~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
....+ .|+. ..|..=.+.+..+|++++|..++++..+.+ .||...-.--.....+.++.++|.++..++.+.+.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99865 6774 467777788999999999999999998865 56665554666777789999999999998765553
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.6e-08 Score=93.73 Aligned_cols=304 Identities=14% Similarity=0.111 Sum_probs=225.4
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-
Q 007543 205 RPSALTYQIILKLFVE--ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST- 281 (599)
Q Consensus 205 ~p~~~t~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~- 281 (599)
.|+..+....+.+++. .++...|...+..+.. ...++.|+.....+.+.+...|+.++|...|++....+ |+.
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~--~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i 266 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHD--NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNV 266 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHh--hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhh
Confidence 3444444555555444 3444555555544432 45667888899999999999999999999999887642 332
Q ss_pred ---HHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007543 282 ---VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 358 (599)
Q Consensus 282 ---~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (599)
..|..|+...|++++...+...+.... +-....|..-.......++++.|+.+-++.++.. +.+...|-.=...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 347777888899999888888776542 1233334444455567788999999999988765 44555665556677
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHh-cCCHHH
Q 007543 359 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI-KGYAK-VNNLEK 436 (599)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~ 436 (599)
...|+.++|.-.|+...... +-+...|.-|+..|...|.+.+|.-+-+...+. ++-+..+...+. ..|.- ...-++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 88899999999999887642 457899999999999999999999887776543 244666665553 33332 234588
Q ss_pred HHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 437 MMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 437 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
|.+++++-.. +.|+ ....+.+...|...|..++++.++++... ..||....+.|.+.+...+.+++|...+....
T Consensus 423 AKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 423 AKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999998875 4677 44778888999999999999999999988 78999999999999999999999999998876
Q ss_pred CCCCC
Q 007543 516 HPNNE 520 (599)
Q Consensus 516 ~~~~~ 520 (599)
..++.
T Consensus 499 r~dP~ 503 (564)
T KOG1174|consen 499 RQDPK 503 (564)
T ss_pred hcCcc
Confidence 55553
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=6.7e-10 Score=114.66 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=53.9
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 134 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 213 (599)
Q Consensus 134 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 213 (599)
+.|+..+|..||.-||..|+.+.|- +|.-|.-+..+.+...++.++.+..+.++.+.+. .|...||..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4566667777777777777777776 7776666665666666777776666666655554 456667777
Q ss_pred HHHHHHHcCCHHH
Q 007543 214 ILKLFVEANKFKE 226 (599)
Q Consensus 214 ll~~~~~~g~~~~ 226 (599)
|..+|...|++..
T Consensus 89 Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHhccchHH
Confidence 7777777776544
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=3.5e-09 Score=112.77 Aligned_cols=266 Identities=12% Similarity=0.068 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHhHh
Q 007543 171 PSVVSHTALMEAYGR-----GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE---------ANKFKEAEEVFMTLLD 236 (599)
Q Consensus 171 p~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~---------~g~~~~A~~~~~~~~~ 236 (599)
.+...|...+++... .+.+++|+++|++..+..+. +...|..+..++.. .+++++|...++++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 355555555554321 23477788888777765432 34455555444332 2346778888888775
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 237 EEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSY 316 (599)
Q Consensus 237 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 316 (599)
.+ +.+...+..+...+...|++++|...|++..+.+ +.+...+
T Consensus 333 ld----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------------------------P~~~~a~ 375 (553)
T PRK12370 333 LD----HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---------------------------------PISADIK 375 (553)
T ss_pred cC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------------------CCCHHHH
Confidence 43 4566777777777778888888888888777641 2234556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 396 (599)
..+...+...|++++|+..+++..+.. +.+...+..++..+...|++++|...+++..+...+-++..+..+..++...
T Consensus 376 ~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 376 YYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK 454 (553)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence 667777777777777877777777664 2222233334444556777777877777766543222344556666677777
Q ss_pred CCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+. ...+....+..++ +.-.|+-+.+..
T Consensus 455 G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~ 528 (553)
T PRK12370 455 GKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKM 528 (553)
T ss_pred CCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHH
Confidence 8888888877776544 233 333444555556656 4666666666532 2233333333333 444566555555
Q ss_pred HHHHHHhC
Q 007543 475 WYKEMESC 482 (599)
Q Consensus 475 ~~~~m~~~ 482 (599)
+ +++.+.
T Consensus 529 ~-~~~~~~ 535 (553)
T PRK12370 529 W-NKFKNE 535 (553)
T ss_pred H-HHhhcc
Confidence 5 666553
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.2e-11 Score=84.77 Aligned_cols=50 Identities=28% Similarity=0.680 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888764
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.9e-09 Score=99.24 Aligned_cols=237 Identities=16% Similarity=0.147 Sum_probs=196.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007543 243 KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINA 322 (599)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 322 (599)
-.|..--+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----------------------------------~~~~dTfllLskv 265 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----------------------------------FPHPDTFLLLSKV 265 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----------------------------------CCchhHHHHHHHH
Confidence 344455567888999999999999888776654 4677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 323 YGKARREEEALAVFEEMLDAGVRPTHKA-YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 401 (599)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 401 (599)
|.+..+++.|+.+|.+-++. .|-.+| ...+...+-..++.++|.++++...+.. +.++....++...|.-.++++-
T Consensus 266 Y~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHH
Confidence 99999999999999998876 454444 4567778888999999999999988753 4566777778889999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 402 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 402 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|+.+++++.+.|+. +...|+.+.-+|.-.+++|-++.-|++....--.|+ ..+|-.+.......|++..|.+.|+-.
T Consensus 343 AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 99999999999965 899999999999999999999999999886544455 458888888889999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 480 ESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 480 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
...+ .-....++.|.-.-.+.|+++.|+.++.......
T Consensus 422 L~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 422 LTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8743 3344778888888899999999999999865433
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=5.3e-08 Score=100.44 Aligned_cols=177 Identities=14% Similarity=0.217 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHc
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA----G----------VRPTH--KAYNILLDAFAIS 361 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g----------~~~~~--~~~~~li~~~~~~ 361 (599)
..++..+...|+++ +|+.|-..|....+..-...++...... + -+|+. .++.-+...|...
T Consensus 131 ~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 34445555555432 4455555555444444444444443321 1 12343 2445556677778
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 362 GMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 440 (599)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (599)
|++++|+.++++.++. .|+ +..|..-...+-+.|++.+|.+.++.....+. -|...-+-.+..+.++|++++|.++
T Consensus 208 g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888877765 344 55666667777888888888888888777653 3666667777777788888888888
Q ss_pred HHHHHHCCCCcCHH------HH--HHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 441 YDKMRVNGIKPNQT------IF--TTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 441 ~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+......+..|-.. +| .....+|.+.|++..|++.|....
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87776554333221 22 344567778888887776665553
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.9e-11 Score=82.79 Aligned_cols=49 Identities=33% Similarity=0.779 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 007543 416 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 464 (599)
Q Consensus 416 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (599)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555554455555555555554444
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1e-08 Score=104.37 Aligned_cols=246 Identities=21% Similarity=0.264 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhHhccCCCC---
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSS-----G-PRPSALTY-QIILKLFVEANKFKEAEEVFMTLLDEEKSPL--- 242 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 242 (599)
..+...|...|...|++++|..+++...+. | ..|...+. +.+...|...+++++|..+|+.++......+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566889999999999999999887653 2 13444443 3477788999999999999999876422112
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 007543 243 -KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVV-SYALLI 320 (599)
Q Consensus 243 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li 320 (599)
+.-..+++.|...|.+.|++++|...++...+ +++..... ..|.+. -++.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-------------------------I~~~~~~~-~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-------------------------IYEKLLGA-SHPEVAAQLSELA 332 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------------------HHHHhhcc-ChHHHHHHHHHHH
Confidence 22346678888899999999999998876654 44442111 122332 366777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--CC-CHHHH
Q 007543 321 NAYGKARREEEALAVFEEMLDAG---VRPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDR----C--SP-DICSY 386 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--~p-~~~~~ 386 (599)
..|+..+++++|..+++...+.- +.++ ..+++.|...|.+.|++++|.++|++.+... . .+ ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 88889999999999988764320 1111 2367777777777777777777777665421 1 11 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh----CCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQ----DGF-VP-NVITYGTLIKGYAKVNNLEKMMEIYDKM 444 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (599)
+.+...|.+.++.++|.++|.+... .|. .| ...+|..|...|.+.|+++.|.++.+..
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5555556666666655555554321 111 01 1234555555555555555555554444
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2.6e-07 Score=86.26 Aligned_cols=384 Identities=14% Similarity=0.146 Sum_probs=228.7
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
.++++++|+.+++.+.... .++......|.-++.-.|.+.+|..+-.+..+ +.-.-..|+..--+.++-++-.
T Consensus 69 hLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred hhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHH
Confidence 4677777777777776644 34445555566666666777777776655443 3444444555555666666555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM-MIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m 272 (599)
.+-..+... ..--.+|.....-.-.+.+|++++.+++.. .|+....|. +.-+|.+..-++-+.++++-.
T Consensus 142 ~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-----n~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 142 TFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-----NPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-----ChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 555444321 112223333334445688999999999853 455555554 455778888889898888877
Q ss_pred HHcCCCCCHHHHHHHhcc-----cCCHH--HHHH----------HHHHHHHcCC------------CCC-----HHHHHH
Q 007543 273 AERGVQQSTVTYNSLMSF-----ETNYK--EVSK----------IYDQMQRAGL------------QPD-----VVSYAL 318 (599)
Q Consensus 273 ~~~g~~~~~~~~~~ll~~-----~~~~~--~a~~----------~~~~m~~~g~------------~~~-----~~~~~~ 318 (599)
.+. ++.+....|..... .|+.. +..+ ..+.+.+.++ -|. +..-..
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 654 22233333332221 12111 1111 1111211110 011 112234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDA-----FAISGMVDQARTVFKCMRRDRCSPDI-CSYTTMLSA 392 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~ 392 (599)
|+--|.+.+++.+|..+.+++.-. .|-......+..+ ......+.-|.+.|+-.-+.+..-|. ..-.++.+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 555688999999999988876411 2222222222221 22223466677777766555544443 234556666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHhcCCHhH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT-TIMDAYGKNKDFDS 471 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~ 471 (599)
+.-..++++.+-+++.+...=...|...|| +..+++..|++.+|+++|-.+....++ |..+|. .|.++|.++++++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 777778999999988887654444555554 789999999999999999887644333 455664 45678889999999
Q ss_pred HHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCcHHHHHHHHHhccCCCCCCC
Q 007543 472 AVVWYKEMESCGFPPDQKA-KNILLSLAKTADERNEANELLGNFNHPNNEPG 522 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 522 (599)
|..++-++. -+.+..+ ...+..-|.+.+++--|-+.++.+...++.|.
T Consensus 447 AW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 447 AWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 987776553 2334434 33445678899998888888888776666554
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=1.3e-07 Score=97.67 Aligned_cols=292 Identities=14% Similarity=0.156 Sum_probs=159.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA---- 221 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---- 221 (599)
..+...|++++|++.+++-... +.............+.+.|+.++|..+|..+++.++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3445556666666665553332 2212233334455555566666666666666554432 333333333333111
Q ss_pred -CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 222 -NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY-EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 222 -g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
.+.+...++++++.... |.......+.-.+..-..+ ..+..++..+..+|+++--.....+..-..+..-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y-----p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY-----PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC-----ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 13444455555554321 1111111111111111111 2233444445555554433333333332222222333
Q ss_pred HHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007543 300 IYDQMQRA----G----------LQPDV--VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 363 (599)
Q Consensus 300 ~~~~m~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (599)
++...... + -.|.. .++..+...|...|++++|+.++++.++.. +..+..|..-...|-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 33333211 1 12333 344666778888999999999999988873 3336678888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--------HHHHHHHHHhcCCHH
Q 007543 364 VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT--------YGTLIKGYAKVNNLE 435 (599)
Q Consensus 364 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~~~ 435 (599)
+.+|.+.++...... .-|-..-+-.+..+.++|+.++|.+++......+..|-... ..-...+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999998888764 23556666677788899999999999888876554332211 234567788889988
Q ss_pred HHHHHHHHHHH
Q 007543 436 KMMEIYDKMRV 446 (599)
Q Consensus 436 ~A~~~~~~m~~ 446 (599)
.|++.|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887766653
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.7e-08 Score=96.20 Aligned_cols=284 Identities=14% Similarity=0.099 Sum_probs=202.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
..-+........+-+...+++.+..++++.+.+.+ ++....+-.-|..+...|+..+-..+=.++.+.- +....+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d----pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD----PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC----CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 44456666666666777777777777777777543 5555566666667777777766666666666542 223344
Q ss_pred HHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007543 284 YNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 360 (599)
Q Consensus 284 ~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (599)
|-++-. ..+++.+|.+.|.+...... .=...|......|+-.|..++|+..+...-+.- +-...-+--+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 443322 23677777777776665431 123568888889999999999999888775431 1122223334456778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CC-CCHHHHHHHHHHHHhcCCH
Q 007543 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----G-FV-PNVITYGTLIKGYAKVNNL 434 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~-p~~~~~~~li~~~~~~g~~ 434 (599)
.++.+.|.+.|.+.... .+-|+...+-+.-.....+.+.+|..+|+..+.. + -+ -...+++.|..+|.+.+++
T Consensus 393 t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 89999999999888753 3557778888877778889999999999887621 1 11 2455789999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 435 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
++|+..+++.... .+.|..++.++.-.|...|+++.|...|.+.+. +.|+..+...+++.+
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999998875 356788999999999999999999999999987 789887777777644
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=2.4e-06 Score=86.13 Aligned_cols=385 Identities=12% Similarity=0.127 Sum_probs=196.3
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHcCC-----CCCCHHhHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCCC--HHHH
Q 007543 107 GTLVRLKQLKKWNVVSEVLEWLRIQSW-----WDFNEMDFLMLITAYGKQGDFNK---AEKVLSFMNKKGYAPS--VVSH 176 (599)
Q Consensus 107 ~~l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~--~~~~ 176 (599)
..+.-+...+++++|.+.++.+..+.. .+.+...|..+-+...++-+.-. ...++..+..+ -+| -..|
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw 251 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLW 251 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHH
Confidence 333444556677777776665544321 12334455555555554433322 23344444333 223 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 177 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 177 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
++|.+-|.+.|.+++|.++|++.... .....-|..+.++|+.-..-.-+..+= + .....+-+.+...
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~-a~~~~~n~ed~~d-------- 318 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--L-ADEESGNEEDDVD-------- 318 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--h-hhhcccChhhhhh--------
Confidence 78888888888888888888776653 123444555555555432222111111 1 0001111111111
Q ss_pred HHcCCHHHHHHHHHHHHHc-----------CCCCCHHHHHHHhcc-cCCHHHHHHHHHHHHHcCCCC------CHHHHHH
Q 007543 257 KKAGGYEKARKLFALMAER-----------GVQQSTVTYNSLMSF-ETNYKEVSKIYDQMQRAGLQP------DVVSYAL 318 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~-----------g~~~~~~~~~~ll~~-~~~~~~a~~~~~~m~~~g~~~------~~~~~~~ 318 (599)
++-...-|+.+..+ .-..++.+|..-+.. .++..+....|.+..+. +.| -...|..
T Consensus 319 -----l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 319 -----LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVE 392 (835)
T ss_pred -----HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHH
Confidence 11222222222222 112234445544443 34566666666666553 112 1234777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------C---
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-----------P--- 381 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p--- 381 (599)
+.+.|-..|+++.|..+|++..+..++-- ..+|..-..+-.+..+++.|+++.+......-. +
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 77888888888888888888776543222 235555556666777777887777665432111 1
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHH
Q 007543 382 ---DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ-TIFT 457 (599)
Q Consensus 382 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~ 457 (599)
+...|...++.--..|-++....+++++.+..+. ++.........+-...-++++.++|++=+..=-.|+. .+|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 2234555555555667777777777777765443 2222222222333445566777777664433223443 3666
Q ss_pred HHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHH-H-HHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 458 TIMDAYGK---NKDFDSAVVWYKEMESCGFPPDQK-A-KNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 458 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~-~-~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
+.+.-+.+ .-..+.|..+|++.++ |++|... | |......--+.|....|..++++.
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66555443 2346677777777776 5565542 2 222223333456666666666653
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.6e-08 Score=95.78 Aligned_cols=278 Identities=14% Similarity=0.105 Sum_probs=183.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
.+......-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++++.. |....+|-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y----P~~a~sW~ 316 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY----PSKALSWF 316 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC----CCCCcchh
Confidence 345555555555566666666666666665542 2344444444445556665555555555554432 44455566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHhcccCCHHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHh
Q 007543 251 MMIYMYKKAGGYEKARKLFALMAER--GVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA--G-LQPDVVSYALLINAYGK 325 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~ 325 (599)
++.-.|.-.|+..+|++.|.+.... -..|.-..|.......+.-++|...+...-+. | ..| +--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHH
Confidence 6666666666666666666654422 12222333333444445555555555444432 1 122 2224445788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCH
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCS----PDICSYTTMLSAYVNASDM 399 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~ 399 (599)
.++.+.|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..... .+. .-..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999999988764 678888888888888889999999999877632 111 1345688888999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 400 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
++|+..+++.+... +-|..++.++.-.|...|+++.|.+.|.+.. .+.||..+-..++.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 99999999988765 4589999999999999999999999999988 46788776666665
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.15 E-value=2.7e-08 Score=103.11 Aligned_cols=266 Identities=15% Similarity=0.152 Sum_probs=178.7
Q ss_pred cCCCCChHHHHHHH-HHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 007543 96 RGQPLPKDLVLGTL-VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV 174 (599)
Q Consensus 96 ~~~~~~~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 174 (599)
..+..|...++..+ .+++..++.+-|- +|..|+..+ .+.+..+|+.++......++.+.+. .|...
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34555655555444 4677777776666 888887654 4677888999999999988888877 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
+|+.|..+|.+.|+... |+...+ -...+...+...|--..-..++..+.- ..+.-||.. +++.
T Consensus 85 tyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c--~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHC--CPHSLPDAE---NAIL 147 (1088)
T ss_pred HHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhccc--CcccchhHH---HHHH
Confidence 99999999999998765 333222 122344445555555554555444321 233445543 3444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHhc-ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 255 MYKKAGGYEKARKLFALMAERGV-QQSTVTYNSLMS-FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
...-.|-++.+++++..+..... .|..+ ++. .........++........-.|+..+|..++..-...|+.+.|
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 45556777777777766643211 12222 122 2223334444444444322258999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 333 LAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 398 (599)
Q Consensus 333 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 398 (599)
..++.+|.+.|++.+..-|-.|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|.
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999988888877777655 78888888999999999999999999888887777555
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=4e-08 Score=100.12 Aligned_cols=246 Identities=15% Similarity=0.223 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhc--cCCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDE--EKSP-LKPDQK-MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 284 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 284 (599)
.+...+...|...|+++.|+.+++..++. ...| ..|... ..+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---------- 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---------- 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------
Confidence 45666888899999999999999888753 1111 122222 234467788888888888888877654
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHH
Q 007543 285 NSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA-----GV-RPTHK-AYNILLDA 357 (599)
Q Consensus 285 ~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~ 357 (599)
+++.......+.-..+++.|...|.+.|++++|...++...+. |. .|.+. .++.+...
T Consensus 270 ---------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 270 ---------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ---------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 2333332222223457888888999999999998888876432 11 11221 34556666
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC---CCCHHHHHH
Q 007543 358 FAISGMVDQARTVFKCMRRD---RCSPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GF---VPNVITYGT 423 (599)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---~p~~~~~~~ 423 (599)
++..+++++|..+++...+. -..++ ..+++.|...|.+.|++++|.+++++++.. +- .-....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 77777777777777654332 01111 234555555555666666666655554421 00 111234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CCC-CcC-HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 424 LIKGYAKVNNLEKMMEIYDKMRV----NGI-KPN-QTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|...|.+.+++++|.++|.+... .|. .|+ ..+|..|...|.+.|+++.|.++.+..
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 55555555555555555544321 111 122 224555555555555555555555444
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.1e-08 Score=94.31 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 177 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 177 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
+.+.++|.+.|.+.+|...|+.-.+. .|-+.||..|-+.|.+..+...|+.+|.+.++. ++-|+.....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHH
Confidence 56677777777777777777776664 344556667777777777777777777777642 244444444455666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 257 KKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF 336 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (599)
-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|
T Consensus 301 eam~~~~~a~~lYk~vlk~~---------------------------------~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH---------------------------------PINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC---------------------------------CccceeeeeeeeccccCCChHHHHHHH
Confidence 66666666666666655431 234444555566666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007543 337 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI--CSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 414 (599)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 414 (599)
+++++.| ..+...|+.+.-+|.-.++++-++.-|++....--.|+. ..|..+.......|++..|.+.|+-....+
T Consensus 348 RRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d- 425 (478)
T KOG1129|consen 348 RRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD- 425 (478)
T ss_pred HHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-
Confidence 7777777 346666666666676777777777777666554333332 345555555555666666666666655544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
.-+...++.|.-.-.+.|++++|..+++...
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 2355566666666666666666666666655
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.3e-05 Score=80.22 Aligned_cols=401 Identities=13% Similarity=0.173 Sum_probs=222.1
Q ss_pred CCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 99 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA 178 (599)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 178 (599)
+-+.+.+..-++.+.+..++++|+.+.+.-... ..+..-+.-=.-+..+.++.++|...++..... +..+...
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L 115 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEALKTLKGLDRL----DDKLLEL 115 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHHHHHhccccc----chHHHHH
Confidence 344444555555666666777766443221110 000000112233344677777777777633221 3335555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------CCHHHHHHHHH---HHHHcCCHHHHH
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSSGPR---------------------------PSALTYQIILK---LFVEANKFKEAE 228 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~g~~---------------------------p~~~t~~~ll~---~~~~~g~~~~A~ 228 (599)
-.+.+.+.|++++|+++|+.+.+.+.. ....+|..+.+ .+...|++.+|+
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~ 195 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAI 195 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHH
Confidence 566677777777777777777544321 11223333332 356779999999
Q ss_pred HHHHHhHhc-------cCC---CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHhcccCC-
Q 007543 229 EVFMTLLDE-------EKS---PLKPDQ-KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS---TVTYNSLMSFETN- 293 (599)
Q Consensus 229 ~~~~~~~~~-------~~~---~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~- 293 (599)
++++...+. +.. ++..+. .+-..|...+-..|+.++|..+|...++...... .+.-|.++...++
T Consensus 196 elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 196 ELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhcccc
Confidence 999888321 101 111111 1223355667788999999999999887754322 1233444443211
Q ss_pred -H-H-HHHHHHHHHHHcCC----------CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 294 -Y-K-EVSKIYDQMQRAGL----------QPDVVSY-ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 294 -~-~-~a~~~~~~m~~~g~----------~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
+ + .++..++....... +...+.. +.++..| .+..+.+.++-..... ..|.. .+.+++....
T Consensus 276 ~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t 350 (652)
T KOG2376|consen 276 NYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEAT 350 (652)
T ss_pred ccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHH
Confidence 1 0 12222221111000 0011111 2222222 2334444444333321 13333 3344443332
Q ss_pred --HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHhhCCCCCCHHHHHHHHHHHH
Q 007543 360 --ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR--------RLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 360 --~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~ 429 (599)
+...+.+|..++...-+..........-.++......|+++.|.+++. .+.+.+..|- +...+...+.
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~ 428 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYY 428 (652)
T ss_pred HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHH
Confidence 223577788888777654322234556667778889999999999999 5555554554 4456777788
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCcCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 430 KVNNLEKMMEIYDKMRVN--GIKPNQT----IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
+.++.+.|..++.+.... .-.+... ++.-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +
T Consensus 429 ~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d 506 (652)
T KOG2376|consen 429 KIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-D 506 (652)
T ss_pred hccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-C
Confidence 888877777777766531 1112222 34444444567899999999999999854 67778889999999887 4
Q ss_pred HHHHHHHHHhcc
Q 007543 504 RNEANELLGNFN 515 (599)
Q Consensus 504 ~~~A~~~~~~~~ 515 (599)
.+.|..+-+++.
T Consensus 507 ~eka~~l~k~L~ 518 (652)
T KOG2376|consen 507 PEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHhhcCC
Confidence 899999888764
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5.8e-06 Score=79.11 Aligned_cols=289 Identities=13% Similarity=0.139 Sum_probs=200.7
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC-HHHHHHHHHHHHHcCCHH
Q 007543 186 GGRYKNAEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD-QKMFHMMIYMYKKAGGYE 263 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 263 (599)
.++...|...+-.+.... .+-|+.....+.+.+...|+.++|...|++.... .|+ ........-.+.+.|+++
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-----dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-----NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-----ChhhhhhHHHHHHHHHhccCHh
Confidence 455555555554443333 3446667778888888888888888888887632 232 222223333455677777
Q ss_pred HHHHHHHHHHHcC-CCCC-HHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 264 KARKLFALMAERG-VQQS-TVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 264 ~A~~~~~~m~~~g-~~~~-~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
.-..+...+.... .... .+.-..++-...++..|+.+-++.++.. +.+...|..-...+...+++++|.-.|+..+.
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 7777776665432 1011 1111222233567778887777777654 23455666667788899999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHhhCCCCCC-H
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML-SAYV-NASDMEGAEKFFRRLKQDGFVPN-V 418 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~-~ 418 (599)
.. +-+...|..|+..|...|++.+|..+-+...+. .+.+..+.+.+. ..|. ...--++|.+++++-... .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 53 467889999999999999999998877765543 233555555442 2222 233457899999987765 454 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
...+.+...|...|..+.+..++++... ..||....+.|.+.+...+.+.+|...|....+ +.|+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 4567788889999999999999999885 378999999999999999999999999999988 55643
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=4.1e-06 Score=86.32 Aligned_cols=375 Identities=12% Similarity=0.067 Sum_probs=257.2
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 007543 134 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-ALTYQ 212 (599)
Q Consensus 134 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 212 (599)
+..++..|..|.-.+..+|+++.+.+.|++....-+. ....|+.+...|...|.-..|..++++-......|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456778888999999999999999999998765433 678999999999999999999999988765443343 44444
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHhHhc--cCCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCC-
Q 007543 213 IILKLFV-EANKFKEAEEVFMTLLDE--EKSPLKPDQKMFHMMIYMYKKA-----------GGYEKARKLFALMAERGV- 277 (599)
Q Consensus 213 ~ll~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~- 277 (599)
..-+.|. +.+..++++.+-.++++. ...+ ......|..+.-+|... ....++++.+++..+.+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444444 346777777777777651 1111 12233444444444332 124567888888876654
Q ss_pred CCCHHHHHHHhcc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------
Q 007543 278 QQSTVTYNSLMSF-ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT--------- 347 (599)
Q Consensus 278 ~~~~~~~~~ll~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------- 347 (599)
.|+...|-++-.+ .++.+.|....++..+.+...+...|..|.-.+...+++.+|+.+.+.....- ++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhh
Confidence 3455555555444 67899999999999988667788899999999999999999999988765431 11
Q ss_pred ------------HHHHHHHHHHHH------H---cC--------------CHHHHHHHHHHHH--------hCC------
Q 007543 348 ------------HKAYNILLDAFA------I---SG--------------MVDQARTVFKCMR--------RDR------ 378 (599)
Q Consensus 348 ------------~~~~~~li~~~~------~---~g--------------~~~~A~~~~~~m~--------~~~------ 378 (599)
..|...++..+- . .| +..+|.+....+. ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 111122221111 0 00 1111111111110 001
Q ss_pred ---CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 379 ---CS--PD------ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 379 ---~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.. |+ ...|......+.+.+..++|...+.+..... .-....|......+...|..++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 01 11 1234455567778888899988888776643 446667777778888999999999999998854
Q ss_pred CCCcC-HHHHHHHHHHHHhcCCHhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccC
Q 007543 448 GIKPN-QTIFTTIMDAYGKNKDFDSAVV--WYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 516 (599)
Q Consensus 448 ~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 516 (599)
.|+ ..+..++...+.+.|+...|.. ++.++.+.+ +-++..|..+...+.+.|+.+.|...+.....
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 566 5588999999999999888888 999999965 55778999999999999999999999887543
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=3.4e-07 Score=89.30 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
.|..+...|.+.|++++|...|++..+..+. +...|+.+...+...|++++|.+.|++.++.+ +.+..++..+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~ 140 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD----PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHH
Confidence 4555555555556666666655555554332 44555555555555666666666555555422 223445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007543 255 MYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+...|++++|.+.|+...+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555666666655555544
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=3.7e-07 Score=89.05 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
...|+.+...+...|++++|...|++.++.. +.+..+|..+...+...|++++|.+.|+...+. .|+..........
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l 174 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYL 174 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445555555555555555555555555432 223344444555555555555555555555443 2221111111111
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCc-CHHHHHHHHHHHHhc
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN---G--IKP-NQTIFTTIMDAYGKN 466 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~p-~~~~~~~li~~~~~~ 466 (599)
+...++.++|...|.+..... .|+...+ . ......|+..++ +.+..+.+. . +.| ....|..+...+.+.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 223445555555554433221 1221111 1 111223333332 233333211 0 011 123566667777777
Q ss_pred CCHhHHHHHHHHHHhC
Q 007543 467 KDFDSAVVWYKEMESC 482 (599)
Q Consensus 467 g~~~~A~~~~~~m~~~ 482 (599)
|++++|+..|++..+.
T Consensus 250 g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 250 GDLDEAAALFKLALAN 265 (296)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777663
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=4.6e-06 Score=84.33 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=101.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY-APS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
...|..+...+...|+.+.+.+.+....+... .++ ..........+...|++++|.+++++..+..+. |...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 34455555566666666666555555443321 111 112222333455667777777777776654322 3333331 1
Q ss_pred HHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 007543 216 KLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 291 (599)
Q Consensus 216 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 291 (599)
..+.. .+..+.+.+.+... ....+........+...+...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------------- 144 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------------- 144 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 12222 23333333333321 11112223334445556666666666666666665531
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHH
Q 007543 292 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPTH--KAYNILLDAFAISGMVDQAR 368 (599)
Q Consensus 292 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~ 368 (599)
+.+...+..+...|...|++++|...+++...... .++. ..|..+...+...|++++|.
T Consensus 145 ------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 145 ------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred ------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 22344556666667777777777777776655421 1222 23445666667777777777
Q ss_pred HHHHHHH
Q 007543 369 TVFKCMR 375 (599)
Q Consensus 369 ~~~~~m~ 375 (599)
.++++..
T Consensus 207 ~~~~~~~ 213 (355)
T cd05804 207 AIYDTHI 213 (355)
T ss_pred HHHHHHh
Confidence 7777664
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=3.6e-05 Score=77.85 Aligned_cols=365 Identities=12% Similarity=0.127 Sum_probs=230.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG------PRPSALTYQI 213 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ 213 (599)
.|...+......|-++-+..++++-.+. ++..-+--|..++..+++++|-+.+...+... .+.+...|..
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 4555666666777777777777777764 44556667777777888888777777764321 1234445555
Q ss_pred HHHHHHHcCCHH---HHHHHHHHhHhccCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 007543 214 ILKLFVEANKFK---EAEEVFMTLLDEEKSPLKPD--QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 288 (599)
Q Consensus 214 ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 288 (599)
+.+..++.-+.- ....+++.++. .-+| ...|+.|.+.|.+.|.+++|..+|++....-. ++.-|+.+.
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~-----rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~if 288 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIR-----RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIF 288 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhcc-----cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHH
Confidence 555544443322 23334444432 1333 35789999999999999999999998876422 222233332
Q ss_pred cccCC-------------------------HHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 289 SFETN-------------------------YKEVSKIYDQMQRAG-----------LQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 289 ~~~~~-------------------------~~~a~~~~~~m~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
.++.. ++-...-|+.+...+ -+-++..|..-+. +..|+..+-
T Consensus 289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~ 366 (835)
T KOG2047|consen 289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHH
Confidence 22111 112222333333221 1123334443333 335667777
Q ss_pred HHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 007543 333 LAVFEEMLDAGVRPT------HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD---ICSYTTMLSAYVNASDMEGAE 403 (599)
Q Consensus 333 ~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~ 403 (599)
...|.+.++. +.|. ...|..+...|-..|+++.|..+|++..+-..+-- ..+|..-...-.++.+++.|+
T Consensus 367 i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 367 INTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 8888887654 2222 23688899999999999999999999887543221 345666666667888999999
Q ss_pred HHHHHHhhCCCC-----------C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 007543 404 KFFRRLKQDGFV-----------P------NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 466 (599)
Q Consensus 404 ~~~~~m~~~~~~-----------p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (599)
++.++.....-. + +...|...++.--..|-++....+|+++.+..+. ++.+.......+-.+
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Confidence 999987542111 1 2334666677777789999999999999976543 444444455566778
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHH-hh--cCcHHHHHHHHHhccCCCC
Q 007543 467 KDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLA-KT--ADERNEANELLGNFNHPNN 519 (599)
Q Consensus 467 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~-~~--~g~~~~A~~~~~~~~~~~~ 519 (599)
..++++.+++++-+..=-.|+. ..|+..+.-+ .+ .-+.+.|+.++++..+.-+
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 8899999999987765334555 5677766433 23 2368999999999877433
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=4.1e-07 Score=80.45 Aligned_cols=197 Identities=13% Similarity=0.055 Sum_probs=165.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 394 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 394 (599)
+...|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+-|++..... +-+-...|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667788999999999999999999886 6667799999999999999999999999988753 335677888888899
Q ss_pred hcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHH
Q 007543 395 NASDMEGAEKFFRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (599)
..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|++..+.. +-.....-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988642 12235678888888999999999999999999763 233567788889999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 474 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 474 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+++.....+ .++.......+......|+.+.+.++=..+.
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999998766 4888888888899999999998887766654
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=9.6e-07 Score=78.17 Aligned_cols=198 Identities=17% Similarity=0.113 Sum_probs=138.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
....|.-.|...|++..|.+-+++..+.... +..+|..+...|-+.|..+.|.+.|++..+..+. +....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3456778899999999999999999887532 5678999999999999999999999998886544 6677888888889
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
..|++++|.+.|++.+..... ..-..+|..+.-+..+.|+.+.|...|++..+...
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y--~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp---------------------- 170 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAY--GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP---------------------- 170 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCC--CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc----------------------
Confidence 999999999999998864332 33345788888888889999999998888776521
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
-...+...+.....+.|++-.|..+++.....+ .++..+.-..|..--..|+.+.+.+.=.++.
T Consensus 171 -----------~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 171 -----------QFPPALLELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred -----------CCChHHHHHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122233444444555555555555555555444 2555555445555555555555544444443
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.95 E-value=6.5e-05 Score=76.30 Aligned_cols=381 Identities=14% Similarity=0.109 Sum_probs=195.1
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 116 KKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI 195 (599)
Q Consensus 116 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 195 (599)
+++++|...+.-+...+ +.|...+.-|.-.=.+.|+++.....-....+.. +.....|.....++.-.|++..|..+
T Consensus 89 K~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444332 2333333333223333344444444444443331 11344556666666666666666666
Q ss_pred HHHHHhCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 196 FRRMQSSG-PRPSALTYQIIL------KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 196 ~~~m~~~g-~~p~~~t~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+++..+.. -.|+...|.... ....+.|..+.|.+.+..-.. .+......-..-...+.+.++.++|..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~----~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK----QIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh----HHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 66665543 134444443322 123445555555555444321 1111112222344556666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHhc-ccCCHH---HHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHC
Q 007543 269 FALMAERGVQQSTVTYNSLMS-FETNYK---EVS-KIYDQMQRAGLQPDVVSYALL-INAYGKARREEEALAVFEEMLDA 342 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~ll~-~~~~~~---~a~-~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~ 342 (599)
+..+..+ .||..-|...+. +.|.+. ++. .+|......- |-...-.-+ ++......-.+..-.++..+.+.
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 6666655 255554444332 222111 111 2333332210 000000000 01111111223344455556666
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 007543 343 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMR----RDR----------CSPDIC--SYTTMLSAYVNASDMEGAEKFF 406 (599)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~ 406 (599)
|+++ ++..+...|-.-...+-..++.-.+. ..| -+|.+. ++..++..+-+.|+++.|..++
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6543 23333333322111111111111111 111 145544 4456677899999999999999
Q ss_pred HHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 007543 407 RRLKQDGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 485 (599)
Q Consensus 407 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 485 (599)
+..+.+ .|+ +..|..=.+.+.+.|++++|..++++..+.+ .||..+-..-..-..++.+.++|.++.....+.|..
T Consensus 395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 999876 454 3456666788999999999999999999775 466666556677778999999999999999887641
Q ss_pred C--C----HHHHHHHH--HHHhhcCcHHHHHHHHHh
Q 007543 486 P--D----QKAKNILL--SLAKTADERNEANELLGN 513 (599)
Q Consensus 486 p--~----~~~~~~ll--~~~~~~g~~~~A~~~~~~ 513 (599)
. + .-.|..+- .+|.++|++.+|.+-+..
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 1 1 11233332 367788888777665544
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=9e-06 Score=82.19 Aligned_cols=202 Identities=11% Similarity=0.010 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDI--CSYTTM 389 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l 389 (599)
......+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++...... .|+. ..|..+
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3455567778899999999999999999875 55677888899999999999999999998876421 2333 345678
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCC-CCcCHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGF-VPNVITY-G--TLIKGYAKVNNLEKMMEI--Y-DKMRVNG-IKPNQTIFTTIMD 461 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A~~~--~-~~m~~~~-~~p~~~~~~~li~ 461 (599)
...+...|+.++|..++++...... .+..... + .++.-+...|..+.+.+. + ..-.... -............
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 8899999999999999999864332 1222211 1 333334444543333332 1 1111110 0111222335777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 462 AYGKNKDFDSAVVWYKEMESCGFPP--D------QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~g~~p--~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
++...|+.++|..+++.+......+ . ........-++...|+.++|.+.+....
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999986522110 1 1112222345778999999999998764
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1.2e-05 Score=75.43 Aligned_cols=381 Identities=13% Similarity=0.124 Sum_probs=236.6
Q ss_pred HHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 109 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 188 (599)
Q Consensus 109 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 188 (599)
+.-+..-+++.-|..++++-...+. .-...+-..+..+|...|++++|..++..+.+.. .++...|..|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 4444445678888888887764431 1112344578889999999999999999887754 5678889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 189 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 189 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+.+|..+-.+. .-++..-..++....+.++-++-..+.+.+.+ ...---+|.......-.+++|+++
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD--------~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD--------TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh--------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999886664 23555667777888888998888888777753 223334566666666789999999
Q ss_pred HHHHHHcCCCCCHHHHHHHhcc----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH-----
Q 007543 269 FALMAERGVQQSTVTYNSLMSF----ETNYKEVSKIYDQMQRAGLQPDV-VSYALLINAYGKARREEEALAVFEE----- 338 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~ll~~----~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~----- 338 (599)
|......+ |+-...|.-+.. ..-++-+.++++-..+.- ||. ...|.......+.=.-..|..-.+.
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 99988653 344444444432 234555666666666542 343 3344333322221111111111111
Q ss_pred ---------HHHCC------------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 339 ---------MLDAG------------VRPT-----HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 339 ---------m~~~g------------~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
+.+++ +-|. +..--.|+--|.+.+++.+|..+.+++.- ..|-....-.+.
T Consensus 250 ~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv-- 325 (557)
T KOG3785|consen 250 DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV-- 325 (557)
T ss_pred cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--
Confidence 11111 0111 11233455567888999999988876642 122222222222
Q ss_pred HHhcC-------CHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 007543 393 YVNAS-------DMEGAEKFFRRLKQDGFVPNVI-TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 464 (599)
Q Consensus 393 ~~~~g-------~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (599)
++..| ...-|.+.|+..-+++..-|.. --.++..++.-..++++.+-++..+... +..|...--.+..+.+
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHH
Confidence 22222 3556777776654444332222 1234455556667789999988888765 2333333345788999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCcHHHHHHHHHhc
Q 007543 465 KNKDFDSAVVWYKEMESCGFPPDQKAKN-ILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
..|++.+|+++|-......++ |..+|. .|...|.+.++.+.|..++-++
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999999999999877553333 445555 5567889999999999988776
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=8.6e-06 Score=80.80 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=130.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHH
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC-------SYTT 388 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ 388 (599)
...+.++..+..+++.|++-+....+.. -+..-++....+|...|.+.++...-....+.|.. ... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456666667777777777777776653 34444555556677777666666555554444321 111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT-------------------------YGTLIKGYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~ 443 (599)
+..+|.+.++++.|...|.+.......|+..+ ...=...+.+.|++..|.+.|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 33355566677777777776654433333222 11225567788999999999999
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 444 MRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 444 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+++.. +-|...|..-.-+|.+.|.+..|+.-.+...+. .|+. ..|..=..++....+++.|.+.+.+..+.++
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99875 456779999999999999999999998888884 4544 4466666677788889999999988765553
No 86
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00012 Score=72.77 Aligned_cols=408 Identities=14% Similarity=0.199 Sum_probs=231.1
Q ss_pred CCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007543 97 GQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSH 176 (599)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 176 (599)
..+..-+.+.. +.+-...+..+++++.+|.+... ++..+..|..-+..-.+..+++..+++|.+-... .-+...|
T Consensus 15 ~nP~di~sw~~-lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSWSQ-LIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLW 89 (656)
T ss_pred cCCccHHHHHH-HHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHH
Confidence 33333333333 33334445778888888887754 4666777778888888888888888888877665 2366777
Q ss_pred HHHHHHHHh-cCCHHH----HHHHHHH-HHhCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHhHhccCC
Q 007543 177 TALMEAYGR-GGRYKN----AEAIFRR-MQSSGPRP-SALTYQIILKL---------FVEANKFKEAEEVFMTLLDEEKS 240 (599)
Q Consensus 177 ~~li~~~~~-~g~~~~----A~~l~~~-m~~~g~~p-~~~t~~~ll~~---------~~~~g~~~~A~~~~~~~~~~~~~ 240 (599)
..-++--.+ .|+... ..+.|+- +.+.|..+ +...|+..+.. +....+++...+++.+++...
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP-- 167 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP-- 167 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc--
Confidence 766654433 233222 1222332 33444333 22344555543 334456677777888887421
Q ss_pred CCCCCHHHHHHHHHH------HH-------HcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHhcc
Q 007543 241 PLKPDQKMFHMMIYM------YK-------KAGGYEKARKLFALMAE--RGVQQSTVT---------------YNSLMSF 290 (599)
Q Consensus 241 ~~~~~~~~~~~li~~------~~-------~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~ll~~ 290 (599)
+..=...|+-.... .. +...+..|.++++++.. +|......+ |..+|.-
T Consensus 168 -m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 168 -MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 11112334432211 00 12245567777766652 333222111 3333321
Q ss_pred c---------CC--HHHHHHHHHHHHH-cCCCCCHHH-HHH----HHHHHHhcCC-------HHHHHHHHHHHHHCCCCC
Q 007543 291 E---------TN--YKEVSKIYDQMQR-AGLQPDVVS-YAL----LINAYGKARR-------EEEALAVFEEMLDAGVRP 346 (599)
Q Consensus 291 ~---------~~--~~~a~~~~~~m~~-~g~~~~~~~-~~~----li~~~~~~g~-------~~~A~~~~~~m~~~g~~~ 346 (599)
. +. ...+.-++++... .+..|++.. |.. .-+.+...|+ -+++..+++..+..-...
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0 00 1112222222221 223333221 111 1122333333 345555555554432223
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHH
Q 007543 347 THKAYNILLDAFAISG---MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP-NVITYG 422 (599)
Q Consensus 347 ~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 422 (599)
+..+|..+.+---..- ..+.....++++...-..--.-+|..++..-.+..-+..|..+|.++.+.+..+ ++..++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 3334443332211111 244555556655543222223467778888888888999999999999877776 777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHh
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ--KAKNILLSLAK 499 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~ 499 (599)
+++..|| .++.+-|.++|+-=.++ .+| ..--...++-+...++-..|..+|++....+++|+. ..|..++..=+
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 8888777 47788999999875543 234 444467788888889989999999999887777766 67999999999
Q ss_pred hcCcHHHHHHHHHhcc
Q 007543 500 TADERNEANELLGNFN 515 (599)
Q Consensus 500 ~~g~~~~A~~~~~~~~ 515 (599)
.-|+...+.++-+++.
T Consensus 484 ~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRF 499 (656)
T ss_pred hcccHHHHHHHHHHHH
Confidence 9999999988887754
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00011 Score=73.84 Aligned_cols=385 Identities=13% Similarity=0.110 Sum_probs=221.1
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH---
Q 007543 103 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL--- 179 (599)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--- 179 (599)
...+..+.+....+.+++|.+....+.... +.+...+..=+-++.+.+++++|+++.+.-.. ..+++..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHH
Confidence 456777777777888888888888777654 55667777777788888999999866554321 1222222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH--HHHHHHHHH
Q 007543 180 -MEAYGRGGRYKNAEAIFRRMQSSGPRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ--KMFHMMIYM 255 (599)
Q Consensus 180 -i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~li~~ 255 (599)
..+..+.++.++|+..+. |..+ +..+...-...+.+.|++++|..+|+.+.+.+ .++. ..-..++.+
T Consensus 85 KAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~----~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN----SDDQDEERRANLLAV 155 (652)
T ss_pred HHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CchHHHHHHHHHHHH
Confidence 333446888999998887 3333 33466666777888999999999999997532 2221 111112111
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc------ccCCHHHHHHHHHHHHHcCC------CCC-H-------HH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS------FETNYKEVSKIYDQMQRAGL------QPD-V-------VS 315 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~------~~~~~~~a~~~~~~m~~~g~------~~~-~-------~~ 315 (599)
-. +... ..+......| ..+|..+.. ..|++.+|+++++...+.+. ..+ . .+
T Consensus 156 ~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 156 AA-------ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HH-------hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 11 1111 1222222333 223433332 36899999999988843221 111 1 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHc------------------------------
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKA----YNILLDAFAIS------------------------------ 361 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~------------------------------ 361 (599)
-..|...+-..|+-++|..++...++.. .+|... -|.|+.+-...
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2345566778999999999999998876 444322 12222111000
Q ss_pred ---------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007543 362 ---------------GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV--NASDMEGAEKFFRRLKQDGFVPNVITYGTL 424 (599)
Q Consensus 362 ---------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 424 (599)
+..+.+.++-.... +..|. ..+..++..+. +.....+|..++....+....-...+.-.+
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH
Confidence 00011111110000 11222 23333433222 222466777777776655322234555667
Q ss_pred HHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHH----H
Q 007543 425 IKGYAKVNNLEKMMEIYD--------KMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQK----A 490 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----~ 490 (599)
+......|+++.|.+++. .+.+.+-.| .+..++...+.+.++-+.|..++.+.... .-.+... +
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 777888999999999999 555444333 45566777788888777677776666430 0112222 3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 491 KNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 491 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+.-+...-.+.|+.++|..+++++.+.++
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 33334444567999999999999876554
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.74 E-value=0.00038 Score=72.35 Aligned_cols=360 Identities=14% Similarity=0.092 Sum_probs=232.9
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM-EAYG-RGGRYK 190 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~ 190 (599)
...+++..+.+.||...... -.....|+.+.-.|.-.|.-..|..+++.-......|+..+--.++ ..|. +.+..+
T Consensus 334 ~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 34466777777777766432 1234678889999999999999999999876654335444433333 3333 357788
Q ss_pred HHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 007543 191 NAEAIFRRMQSS--GP--RPSALTYQIILKLFVEA-----------NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 255 (599)
Q Consensus 191 ~A~~l~~~m~~~--g~--~p~~~t~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (599)
+++++-.+.... +. ......|..+.-+|... ....++.+.+++.++.+ +.|..+...+.--
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d----~~dp~~if~lalq 487 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD----PTDPLVIFYLALQ 487 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC----CCCchHHHHHHHH
Confidence 888877777652 11 12334455555454422 23456777888887643 2333344445556
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHc-CC------------------CCCH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRA-GL------------------QPDV 313 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---ll~~~~~~~~a~~~~~~m~~~-g~------------------~~~~ 313 (599)
|+..++++.|.+...+..+.+-..+...|.. ++++.+++.+|+.+.+..... |. ..-.
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence 7788999999999999988765666666654 456789999999888776653 11 0001
Q ss_pred HHHHHHHHHHHh------cC-----------------CHHHHHHHHHHH--------HHCC---------CC--CC----
Q 007543 314 VSYALLINAYGK------AR-----------------REEEALAVFEEM--------LDAG---------VR--PT---- 347 (599)
Q Consensus 314 ~~~~~li~~~~~------~g-----------------~~~~A~~~~~~m--------~~~g---------~~--~~---- 347 (599)
.|+..++..+-. .+ +..+|.+....+ ...| .. |+
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 122222222210 00 111111111111 0001 00 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007543 348 --HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 425 (599)
Q Consensus 348 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 425 (599)
...|......+.+.+..++|...+.+.... .+-....|......+...|..++|.+.|......+ +-++....++.
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala 725 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 112455666777888888888877777653 23345666666678888999999999999888764 33567888999
Q ss_pred HHHHhcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 426 KGYAKVNNLEKMME--IYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 426 ~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.++.+.|+..-|.. ++..+.+.+ +-+...|-.+...+.+.|+.++|.+.|....+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999998877777 999999775 45688999999999999999999999998866
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=2.5e-05 Score=71.69 Aligned_cols=325 Identities=12% Similarity=0.115 Sum_probs=176.2
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH
Q 007543 105 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA-LMEAY 183 (599)
Q Consensus 105 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~ 183 (599)
+..++.++.+-.++..|.+++..-.+.. +-+....+.|..+|....++..|-..++++... .|...-|.. -.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3444444444556666766665554443 224455666777777777777777777777654 344444432 24555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 184 GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK--LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
.+.+.+.+|+++...|... |+...-..-+. .....+++..+..+.++.-. .-+..+.+...-...+.|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------ENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC------CCccchhccchheeecccc
Confidence 6667777777777666432 12111111111 12234555566666555531 1233333444444456666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHHHHHHcCCC-------------CCH-------------
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYDQMQRAGLQ-------------PDV------------- 313 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~a~~~~~~m~~~g~~-------------~~~------------- 313 (599)
++.|.+-|....+.+--.....||..+.. .++++.|++...++...|++ ||+
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 77776666666655444445556655543 35566666666666554431 111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 314 --VSYALLINAYGKARREEEALAVFEEMLDA-GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 314 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-.- -.+++.+..+-+.-+.... +-...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 11233334467788888888888887422 1244666655443222 1344444444444444432 23457888889
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAKV-NNLEKMMEIYDKMR 445 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 445 (599)
-.||++.-++-|-.++.+=..... -.+...|+ |++++..+ -..++|.+-++.+.
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999988888765322111 12333343 44444433 46777776665554
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=8.7e-05 Score=85.08 Aligned_cols=342 Identities=12% Similarity=0.053 Sum_probs=207.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC---CCCC--HHHHHHHHHHH
Q 007543 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP---LKPD--QKMFHMMIYMY 256 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~--~~~~~~li~~~ 256 (599)
.+...|+++.+..++..+.......+..........+...|++++|...+....+.-... ..+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567787777777665221111122223344455667899999999988775421110 0111 12223344556
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH----HHHH---HhcccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH
Q 007543 257 KKAGGYEKARKLFALMAERGVQQSTV----TYNS---LMSFETNYKEVSKIYDQMQRA----GL-QPDVVSYALLINAYG 324 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~---ll~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~ 324 (599)
...|++++|...+++....-...+.. ..+. .....|++++|...+.+.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 78899999999999887632111211 1111 112368999998888877642 11 111234566677888
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 007543 325 KARREEEALAVFEEMLDA----GVR--P-THKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSP--DICSYTTMLSAY 393 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~ 393 (599)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886542 211 1 2234555666777889999999998876543 1112 233445566678
Q ss_pred HhcCCHHHHHHHHHHHhhC--CCCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHH
Q 007543 394 VNASDMEGAEKFFRRLKQD--GFVPNVI--T--YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ---TIFTTIMDAYG 464 (599)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~--~~~p~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~ 464 (599)
...|+.++|...+...... ....... . ....+..+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887532 1111111 1 011224455688999999998775532111111 12456677788
Q ss_pred hcCCHhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCc
Q 007543 465 KNKDFDSAVVWYKEMES----CGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 523 (599)
Q Consensus 465 ~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 523 (599)
..|++++|...+++... .|..++. .+...+..++.+.|+.++|...+.+..+.....+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 99999999999988864 2333322 34555667889999999999999887655444443
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2.8e-05 Score=71.37 Aligned_cols=291 Identities=15% Similarity=0.194 Sum_probs=201.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI-ILKLF 218 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~ 218 (599)
-+.+.+..+.+..++++|.+++..-.++.. .+......|..+|....++..|-+.++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 456777778889999999999998888742 27888999999999999999999999999764 455555533 24566
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY--MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
.+.+.+.+|+++...|.+ .++...-..-+. .....+++..+..++++....|-......-..++-..|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLD------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcC------CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 788999999999998863 122222111122 233567888888888887654332222233334445789999
Q ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHH--------HHHHH
Q 007543 297 VSKIYDQMQR-AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR-------------PTHK--------AYNIL 354 (599)
Q Consensus 297 a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------~~~~--------~~~~l 354 (599)
|.+-|+...+ .|.+| ...|+.-+.. .+.|++..|+++..+++++|++ ||+. .-+.+
T Consensus 163 AvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999998887 45554 5677766644 4678999999999999888753 2211 12333
Q ss_pred HH-------HHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007543 355 LD-------AFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 426 (599)
Q Consensus 355 i~-------~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 426 (599)
+. .+.+.|+++.|.+-+-.|.-+ ....|++|...+.-.-. .+++.+...-+.-+.+.+. -...||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 33 346788999999888888543 33557777766543222 2445555555555555543 45688999999
Q ss_pred HHHhcCCHHHHHHHHHH
Q 007543 427 GYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 427 ~~~~~g~~~~A~~~~~~ 443 (599)
.||+..-++-|-.++-+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 99999999998888765
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.71 E-value=6e-05 Score=77.22 Aligned_cols=162 Identities=16% Similarity=0.213 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 291 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 370 (599)
Q Consensus 291 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (599)
...|.+|+.+++.++.... -.--|..+...|+..|+++.|.++|-+.- .++-.|.+|.+.|+++.|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 3567888888888876532 23346778888999999999999886542 345678889999999999888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 371 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 450 (599)
Q Consensus 371 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (599)
-.+.. |.......|.+-..-+-++|++.+|.++|-.+- .|+. .|.+|-+.|..+..+++..+-.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC-----
Confidence 76654 334445566666667778888888888774432 3442 4567777777777777665532
Q ss_pred cC--HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 451 PN--QTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 451 p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|+ ..|...+..-|-..|++..|..-|-+.
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 23 234455555566666666666655444
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=0.00011 Score=84.18 Aligned_cols=337 Identities=12% Similarity=0.059 Sum_probs=209.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCH--HHHHHHHHH
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP------RPSA--LTYQIILKL 217 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------~p~~--~t~~~ll~~ 217 (599)
..+...|+++.+...++.+.......+..........+...|++++|..++......-. .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653211111222334445556678999999999987754311 1111 122223345
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHH--HHHH---Hh
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ---QSTV--TYNS---LM 288 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~--~~~~---ll 288 (599)
+...|++++|...++..++....+... .....+.+...+...|++++|...+.+.....-. +... .+.. +.
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 668899999999999987521111000 1234566777788899999999999888643111 1111 1111 11
Q ss_pred cccCCHHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 007543 289 SFETNYKEVSKIYDQMQR----AGLQ--P-DVVSYALLINAYGKARREEEALAVFEEMLDAG--VRP--THKAYNILLDA 357 (599)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~li~~ 357 (599)
...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 236899999888877654 2211 1 23345566667788899999999998875431 112 23345556677
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHH
Q 007543 358 FAISGMVDQARTVFKCMRRDRCS-PDICSY-----TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGY 428 (599)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~ 428 (599)
+...|+.++|...+++....... .....+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88999999999999887542101 111111 11224456689999999998776543211111 1245677788
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 007543 429 AKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
...|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988742 33332 236667778889999999999999999774
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=1.2e-06 Score=84.35 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA----ISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++. ....+.+|..+|+++... ..+++.+.+.+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~ 207 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGL 207 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHH
Confidence 334445555555555555555555554431 222 2222222221 122455555555554432 33455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL-EKMMEIYDKMR 445 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 445 (599)
..++...|++++|.+++.+..+.+ +-+..+...++.+....|+. +.+.+++.++.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555555555555555555554433 22344444455554555544 34444555544
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=0.00025 Score=66.67 Aligned_cols=307 Identities=11% Similarity=0.110 Sum_probs=197.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL---MEAYGRGGRYKNAEAIFRRMQSSGPRPSALT-YQIILKLF 218 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~ 218 (599)
-|...+.-.|++.+|+.-|....+. |+..|-++ ...|...|+-.-|+.-+.+.++ .+||-.. -..-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 4566667778888888888877765 44444443 4467777888888887777776 4566432 12233456
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 298 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~ 298 (599)
.+.|.++.|..-|+.+++.+ |+. +....++.+.-..++-..+..+++.. ...|+...++
T Consensus 117 lK~Gele~A~~DF~~vl~~~-----~s~---~~~~eaqskl~~~~e~~~l~~ql~s~-------------~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE-----PSN---GLVLEAQSKLALIQEHWVLVQQLKSA-------------SGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC-----CCc---chhHHHHHHHHhHHHHHHHHHHHHHH-------------hcCCchhhHH
Confidence 78888888888888887542 211 11222333333333333333332221 1235666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007543 299 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 378 (599)
Q Consensus 299 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (599)
.....+++.. +.|...|..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++...++-.+.
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 6666666653 4577777788888888888888888777776554 445556666677778888888888888777754
Q ss_pred CCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q 007543 379 CSPDICS----YTTM---------LSAYVNASDMEGAEKFFRRLKQDGFVPNVIT---YGTLIKGYAKVNNLEKMMEIYD 442 (599)
Q Consensus 379 ~~p~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~ 442 (599)
.||.-. |-.+ +......+++.++++-.+...+....-..+. +..+-.++...|++.+|++...
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 455321 1111 1123456778888888877776543322223 3445566677788999999988
Q ss_pred HHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 007543 443 KMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 443 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
+..+. .|| ..++.--..+|.-...+++|+.-|+.+.+.
T Consensus 332 evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 332 EVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88854 555 678888888898889999999999988873
No 96
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.5e-08 Score=60.64 Aligned_cols=33 Identities=33% Similarity=0.678 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 167 KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 167 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
+|+.||+.+||+||.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367777777777777777777777777777776
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=4e-05 Score=78.48 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=101.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 398 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 398 (599)
-+.+......|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455566778899999998887653 233457778889999999999999986542 34567888999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
++.|.++-.+.. |.......|-.-..-+-+.|++.+|.++|-.+. .|+. .|..|-++|..+..+++..+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 999998877654 334455667666677788899999988876552 4553 34567777777777776655
Q ss_pred H
Q 007543 479 M 479 (599)
Q Consensus 479 m 479 (599)
-
T Consensus 876 ~ 876 (1636)
T KOG3616|consen 876 H 876 (1636)
T ss_pred h
Confidence 3
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=0.00025 Score=66.59 Aligned_cols=315 Identities=15% Similarity=0.121 Sum_probs=218.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL---KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM 248 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 248 (599)
++.-..-+...+...|++.+|+.-|...++- |+..|.++. ..|...|+-..|+.-+.++++ +.||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-----lKpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-----LKPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-----cCccHHH
Confidence 4444556777888899999999999998653 444455544 568889999999999998885 3677433
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007543 249 F-HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR 327 (599)
Q Consensus 249 ~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 327 (599)
- -.-...+.+.|.++.|..-|+...+.....+. ..++.+-+.... ........+..+.-.|
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~------------~~eaqskl~~~~------e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL------------VLEAQSKLALIQ------EHWVLVQQLKSASGSG 169 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch------------hHHHHHHHHhHH------HHHHHHHHHHHHhcCC
Confidence 2 22345778999999999999998876321111 111111111111 1112334455667789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR 407 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (599)
+...|+.....+++.. +-|...|..-..+|...|.+..|+.-++...+.. ..++.++.-+-..+...|+.+.++...+
T Consensus 170 D~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred chhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999998874 5677888888999999999999998888776643 3466777778888999999999999999
Q ss_pred HHhhCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHhH
Q 007543 408 RLKQDGFVPNVIT----YGTL---------IKGYAKVNNLEKMMEIYDKMRVNGIKPNQ---TIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 408 ~m~~~~~~p~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~ 471 (599)
+..+. .||... |-.| +......+++-++.+-.+...+....... ..+..+-.++...|++.+
T Consensus 248 ECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 98875 466543 2111 12233456777777777777755322112 244556677788999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 472 AVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
|++...+.++ +.|| ..++---..+|.-...++.|+.-+++..+.+.
T Consensus 326 AiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 326 AIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 9999999988 6676 45565556777777778888777777654433
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1.2e-05 Score=83.31 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=202.3
Q ss_pred CCHHhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--------C
Q 007543 136 FNEMDFLMLIT--AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-G--------P 204 (599)
Q Consensus 136 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~ 204 (599)
.|+.+--.+++ .|.-.|+++.|.+-.+.+. +...|..|.+.|.+..+++-|.-.+..|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555554 5777899999988877665 5678999999999998888888777776431 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 205 RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 284 (599)
Q Consensus 205 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 284 (599)
.|+ .+-..+.-.....|.+++|+.+|++... |..|=..|-..|.+++|.++-+.--...++.+-.-|
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR------------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 222 2222233345677888888888888752 344455677788888888776543333334444555
Q ss_pred HHHhcccCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 285 NSLMSFETNYKEVSKIYDQMQ----------RAG---------LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345 (599)
Q Consensus 285 ~~ll~~~~~~~~a~~~~~~m~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (599)
..-+.+.++.+.|++.|++.. ... -..|...|.-....+-..|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 556666667766666655321 111 012334444455555667777777777776643
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007543 346 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 425 (599)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 425 (599)
|-.++...|-.|+.++|-++-++- | |......+...|-..|++.+|..+|.+... |...|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAI 1000 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAI 1000 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHH
Confidence 445666777788888888776543 2 666777788889999999999998887642 22222
Q ss_pred HHHHh---------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHH--------HHhC
Q 007543 426 KGYAK---------------VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE--------MESC 482 (599)
Q Consensus 426 ~~~~~---------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~~ 482 (599)
+.|-. ..+.-.|-++|++. |.. ....+..|-+.|.+.+|+++.=+ ++..
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 22221 12333444455443 211 12234567788888887765422 2222
Q ss_pred CCC--CCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 483 GFP--PDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 483 g~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
++. .|+...+.-.+.+....++++|..++-..
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333 35566666667777778888887776553
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=8.6e-08 Score=58.86 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 344 VRPTHKAYNILLDAFAISGMVDQARTVFKC 373 (599)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (599)
+.||..+|++||++||+.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 333444444444444444444444444333
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=6.8e-07 Score=86.03 Aligned_cols=246 Identities=11% Similarity=0.089 Sum_probs=106.0
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCC
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETN 293 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~ 293 (599)
-+.-.|++..++.-.+ .. ...-..+......+.++|...|+++.++ .++.... .|.......+... ..+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~---~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LK---SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CH---TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHhhhHHHHHHHhh-cc---CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 3444677777776555 22 1111223344555677777788766543 2332222 3443333222222 122
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 294 YKEVSKIYDQMQRAGLQ-PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
-+.+..-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22222222222211111 12222222223344455666665555331 234444455555566666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
.|.+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+
T Consensus 156 ~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 65543 222 222223332221 12455555566555443 24455555555555555566666655555554332
Q ss_pred CCcCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHh
Q 007543 449 IKPNQTIFTTIMDAYGKNKDF-DSAVVWYKEMES 481 (599)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 481 (599)
+-|..+...++-+....|+. +.+.+++.++..
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 11233444455554555554 334445555544
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00083 Score=71.68 Aligned_cols=279 Identities=14% Similarity=0.164 Sum_probs=173.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
.....++-+++|..+|++. ..+....+.|+. ..+.++.|.+.-++.- ...+|..+..+-.+.|
T Consensus 1056 ~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n---------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN---------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC---------ChHHHHHHHHHHHhcC
Confidence 3444556677777777664 234444555543 3455666666655542 2346777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 261 GYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 337 (599)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (599)
...+|++-|-+. .|...|..++.. .+++++..+.+....+..-+|.+. +.||-+|++.++..+.++++
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-
Confidence 777777665432 245556555553 466777777766666655445433 45777777777776655443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007543 338 EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 417 (599)
Q Consensus 338 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 417 (599)
.-|+......+.+-|...|.++.|.-+|.. +.-|..|...+...|++..|...-++. .+
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 146666677777777777777777766653 334667777777778887777655542 25
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLS 496 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 496 (599)
..||..+-.+|...+.+.-| +|.-.++.....-..-++.-|...|.+++-+.+++.... +.- ....|+-|.-
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAI 1321 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHH
Confidence 66777777777665554332 343334445566778889999999999998888877643 222 2234555555
Q ss_pred HHhhcCcHHHHHHHHHhc
Q 007543 497 LAKTADERNEANELLGNF 514 (599)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~ 514 (599)
.|++- +.++..+.++-.
T Consensus 1322 LYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HHHhc-CHHHHHHHHHHH
Confidence 56554 356665555543
No 103
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=0.00013 Score=71.28 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHhCCCCCCHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS---GM----VDQARTVFKCMRRDRCSPDIC 384 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m~~~~~~p~~~ 384 (599)
|..+|+....++.+.|+++++++.++++++.+ ..+...|+.....+.+. |. .++++....+++... +-|..
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~S 218 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNES 218 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcC
Confidence 44445555555555555555555555555544 33344444443333332 11 234444444444432 33445
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 385 SYTTMLSAYVNA----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 385 ~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
.|+.+...+... +...+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 555555555542 23345666666655443 2355566666666664
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2.1e-05 Score=78.75 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=137.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++.++.+ +-|..+.-+|.-.|...|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld----P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD----PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC----CccHHHHHHHHHHHhhhhh
Confidence 356778888888888888777655 77788888888888888888888888887654 5566777778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEM 339 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (599)
-..|++.++.-..... .|..+... .+... +. ..+..........++|-++
T Consensus 369 q~~Al~~L~~Wi~~~p-----~y~~l~~a~~~~~~~---------------~~--------~s~~~~~~l~~i~~~fLea 420 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKP-----KYVHLVSAGENEDFE---------------NT--------KSFLDSSHLAHIQELFLEA 420 (579)
T ss_pred HHHHHHHHHHHHHhCc-----cchhccccCcccccc---------------CC--------cCCCCHHHHHHHHHHHHHH
Confidence 8888888877654321 01111110 00000 00 0111111112222233222
Q ss_pred -HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 007543 340 -LDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 418 (599)
Q Consensus 340 -~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 418 (599)
...+..+|..+...|.-.|--.|.+++|.+.|+...... +-|...||-|...++...+.++|+..|++.++. +|+.
T Consensus 421 a~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~y 497 (579)
T KOG1125|consen 421 ARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGY 497 (579)
T ss_pred HHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCe
Confidence 222223444555555555555555555555555554432 224455555555555555555555555555543 3332
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C------CCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 419 -ITYGTLIKGYAKVNNLEKMMEIYDKMRV---N------GIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 419 -~~~~~li~~~~~~g~~~~A~~~~~~m~~---~------~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
.+...|.-.|...|.+++|.+.|-..+. . ...++..+|.+|=.++.-.++.|.+.+
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1222344455555555555555544331 1 111233455555555555555554433
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=8.8e-06 Score=83.53 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 292 (599)
.+...+.+.|-...|..+|+++- .|..+|.+|+..|+..+|..+..+..++ +|+..-|..+.....
T Consensus 403 ~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34456667777777777777663 4666777777777777777776666552 344444444444433
Q ss_pred C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 293 N---YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 293 ~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (599)
+ +++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+.-+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 2 33333333332211 00111111122445555555554444332 2333444444444445555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 370 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 370 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
.|..-... -+-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++.
T Consensus 541 aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 55444332 11123445555555555555555555555554444 2233334344444444555555555555444
No 106
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=0.00018 Score=70.31 Aligned_cols=124 Identities=8% Similarity=0.047 Sum_probs=84.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-
Q 007543 147 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF- 224 (599)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~- 224 (599)
.+.+.++.++|+.+.+++.+.... +..+|+..-.++...| +++++++.++++.+..++ +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 344456777888888887776322 4556776666666666 568888888888776554 555566555555555552
Q ss_pred -HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 225 -KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 225 -~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
+++..+++.+++.+ +.|..+|+.....+.+.|+++++++.++++.+.+
T Consensus 124 ~~~el~~~~kal~~d----pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 124 ANKELEFTRKILSLD----AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 56777777777644 5677778877777777888888888888877654
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.002 Score=64.51 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=103.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC-SYTTMLSAYVNAS 397 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g 397 (599)
+..+|.+.++++.|+..|.+.+.....|+. ..+....+++....+...-. .|... -...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 334555566666777777665544333222 12223333443333332221 22221 1112245677889
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
++..|+..|.++++.. +-|...|....-+|.+.|.+..|++-.+...+. .|+ ...|.-=..++.-..+|+.|.+.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 458889999999999999999999888887765 344 446655566677778899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHH
Q 007543 477 KEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 477 ~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
.+..+ ..|+..-+.--+.-|
T Consensus 450 ~eale--~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 450 QEALE--LDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHh--cCchhHHHHHHHHHH
Confidence 99887 456654444333333
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=0.0001 Score=80.97 Aligned_cols=231 Identities=12% Similarity=0.094 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007543 243 KPDQKMFHMMIYMYKKAGGYEKARKLFALMAER-GVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLIN 321 (599)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 321 (599)
|-....|-..+......++.++|++++++.+.. +++-.. --...|.++++
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee-----------------------------EKLNiWiA~lN 1505 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE-----------------------------EKLNIWIAYLN 1505 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH-----------------------------HHHHHHHHHHh
Confidence 334566777888888888888888888887653 000000 01234556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 322 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 401 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 401 (599)
.-..-|.-+...++|+++.+.. .-...|..|...|.+.+.+++|.++++.|.++- ......|...+..+.++.+-+.
T Consensus 1506 lEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1506 LENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred HHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHH
Confidence 6566667777777777776642 223467777788888888888888888887652 2456677777788888888888
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 402 AEKFFRRLKQDGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 402 A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
|..++++..+.-.+- ........+..-.+.|+.+.+..+|+...... +-....|+.+|+.=.++|+.+.+..+|++..
T Consensus 1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888777652111 23334455566667888888888888877541 3345688888888888888888888888888
Q ss_pred hCCCCCCH--HHHHHHHHHHhhcCcHHH
Q 007543 481 SCGFPPDQ--KAKNILLSLAKTADERNE 506 (599)
Q Consensus 481 ~~g~~p~~--~~~~~ll~~~~~~g~~~~ 506 (599)
..++.|-. ..|.-.+..-...|+-+.
T Consensus 1662 ~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1662 ELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 87777755 346666666666665443
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.45 E-value=0.00074 Score=72.12 Aligned_cols=362 Identities=15% Similarity=0.089 Sum_probs=202.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHc
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI--ILKLFVEA 221 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~ 221 (599)
+.-.|.+.++...|..-|+...+..+. |...|..+..+|.+.|++..|+++|.+.... .|+. +|.. .....+..
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDN 643 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHh
Confidence 445566777777777777777766533 7888888999999999999999988887653 3332 2222 22345677
Q ss_pred CCHHHHHHHHHHhHhcc---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHhccc
Q 007543 222 NKFKEAEEVFMTLLDEE---KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE-------RGVQQSTVTYNSLMSFE 291 (599)
Q Consensus 222 g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~ll~~~ 291 (599)
|.+.+|...+...+... ..+...-..++-.+...+...|-..+|..++++-++ .....+...|-.+-.++
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 88888888877766421 011111122333333333334444444444443322 11111111111111000
Q ss_pred -------CCH--HHHHH-HHHHHHHcCC--------------------CCCHHHHHHHHHHHHh----cC----CHHHHH
Q 007543 292 -------TNY--KEVSK-IYDQMQRAGL--------------------QPDVVSYALLINAYGK----AR----REEEAL 333 (599)
Q Consensus 292 -------~~~--~~a~~-~~~~m~~~g~--------------------~~~~~~~~~li~~~~~----~g----~~~~A~ 333 (599)
.+. .-... ++.+....+. ..+..+|..|+..|.+ .+ +...|+
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 000 00000 0111111111 1123334444433333 11 234677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007543 334 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 413 (599)
..+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+-... .+....+|..+.-.+.+..+++.|...|.......
T Consensus 804 ~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 804 RCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence 7777776653 4566677766544 5567777777776655433 24466778888888888999999999999887654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--HCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--------
Q 007543 414 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKM--R--VNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES-------- 481 (599)
Q Consensus 414 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 481 (599)
+.|...|-.....-...|+.-++..+|..- . ..|--|+..-|-+.......+|+.++-+.-.+++..
T Consensus 881 -P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~y 959 (1238)
T KOG1127|consen 881 -PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYY 959 (1238)
T ss_pred -chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHH
Confidence 335666655555555678888888888762 2 234455555555555556677776665444443321
Q ss_pred -CCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 482 -CGFPPDQKAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 482 -~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
.|.+-+...|.+.....-+.+.+++|..+..+
T Consensus 960 f~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 960 FLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred HhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 23344557788888888888888877766555
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=0.00019 Score=78.92 Aligned_cols=239 Identities=14% Similarity=0.191 Sum_probs=166.1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 196 FRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP---DQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 196 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
|++.....+. +...|...|......++.+.|.+++++++.. .++.- -...|.++++.-..-|.-+...++|+++
T Consensus 1447 ferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1447 FERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 4555554332 5567888888889999999999999999752 11111 1235566666555556556666666655
Q ss_pred HHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007543 273 AERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYN 352 (599)
Q Consensus 273 ~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 352 (599)
.+. . -.-..|..|...|.+.++.++|.++++.|.+.- .-....|.
T Consensus 1524 cqy--------------------------------c--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~ 1568 (1710)
T KOG1070|consen 1524 CQY--------------------------------C--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWI 1568 (1710)
T ss_pred HHh--------------------------------c--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHH
Confidence 542 1 123457788888888888899999998887763 35677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 353 ILLDAFAISGMVDQARTVFKCMRRDRCSPD---ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
..++.+.+..+-+.|..++.+..+. -|. .....-.+..-.+.|+.+.+..+|+......+ --...|+..++.-.
T Consensus 1569 ~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1569 MYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEI 1645 (1710)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHH
Confidence 8888888888888888888887764 232 33344455566778899999999988876642 36678888899988
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHhHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPNQ--TIFTTIMDAYGKNKDFDSAVVW 475 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~ 475 (599)
+.|+.+.+..+|++....++.|-. ..|.-.+..=-.+|+-..+..+
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999999998888777653 2566666555556665444433
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=5.9e-05 Score=77.66 Aligned_cols=235 Identities=17% Similarity=0.179 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 253 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 253 (599)
..-..+...+...|-...|+.+|++.. .|.-++.+|+..|+.++|..+..+.++. +||...|..+.
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek-----~~d~~lyc~LG 464 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK-----DPDPRLYCLLG 464 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC-----CCcchhHHHhh
Confidence 344567788888999999999998864 3666788899999999999998888752 78888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 254 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEAL 333 (599)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (599)
+.....--+++|.++++....+ -...++..+-..+++.++.+.|+.-.+.. +-...+|-.+..+..+.++++.|.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8887777788999988876543 22333334444678888888888777654 235678888888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007543 334 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 413 (599)
+.|..-.... +-+...||.+-.+|.+.|+-.+|...+++..+-. .-+...|-..+....+.|.+++|.+.+.++....
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999987753 4456689999999999999999999999998876 4455667777778889999999999999886421
Q ss_pred -CCCCHHHHHHHHHHHH
Q 007543 414 -FVPNVITYGTLIKGYA 429 (599)
Q Consensus 414 -~~p~~~~~~~li~~~~ 429 (599)
-..|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 1124444444444443
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=3.1e-05 Score=77.61 Aligned_cols=210 Identities=11% Similarity=0.052 Sum_probs=142.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHHcCCHHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILL-------DAFAISGMVDQART 369 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-------~~~~~~g~~~~A~~ 369 (599)
|+..+.+..+.. +-|......|.-.|...|.-.+|+..++..+.... |-...-..=. ..+.....+....+
T Consensus 338 ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~ 415 (579)
T KOG1125|consen 338 AISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQE 415 (579)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHH
Confidence 333444444332 23556777888888899999999999998876431 1100000000 01111222344455
Q ss_pred HHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 370 VFKCMR-RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 370 ~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
+|-++. ..+..+|+.....|.-.|.-.|++++|.+.|+.++... +-|..+||-|...++...+.++|+..|++.++
T Consensus 416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-- 492 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ-- 492 (579)
T ss_pred HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--
Confidence 555544 34545788888888889999999999999999999875 34788899999999999999999999999996
Q ss_pred CCcCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHh---CC------CCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 007543 449 IKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMES---CG------FPPDQKAKNILLSLAKTADERNEANELL 511 (599)
Q Consensus 449 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g------~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 511 (599)
++|+. .+.-.|.-.|...|.+++|.+.|-..+. .+ -.++...|..|=.++...++.|.+.+..
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 47874 4667788889999999999999877653 21 1123456777766777777766555443
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=4.8e-05 Score=71.80 Aligned_cols=183 Identities=15% Similarity=0.046 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH-HHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH---KAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PDI-CSY 386 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~ 386 (599)
....+..+...+.+.|++++|...|+++.... +.+. .++..+...+.+.|++++|...++++.+.... |.. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567777778888888999998888887653 2222 35677778888888999999888888765311 111 234
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 007543 387 TTMLSAYVNA--------SDMEGAEKFFRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 457 (599)
Q Consensus 387 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 457 (599)
..+..++... |+.++|.+.|+.+.... |+. ..+..+.... . ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---HHH------HH--------HHHHH
Confidence 4444555544 67788888888887653 332 2221111110 0 000 00 00112
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCG--FPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+...+.+.|++++|...+++..+.. -+.....+..+..++.+.|++++|..+++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556777888888888888876631 11123566777778888888888888777764
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.43 E-value=0.0001 Score=78.34 Aligned_cols=364 Identities=14% Similarity=0.100 Sum_probs=218.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP-RPSALTYQIILK 216 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~ 216 (599)
...|..|...|+...+...|.+.|++..+.+.. +..++-.....|++...++.|..+.-..-+... ..-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 456889999999999999999999999987643 788999999999999999999998333222111 111223444555
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--H-HHH-HhcccC
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV--T-YNS-LMSFET 292 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~-~~~-ll~~~~ 292 (599)
.|.+.++...|..-|+..++.+ +.|...|..+..+|..+|++..|+++|.+..... |+.. . +-+ +....|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d----PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD----PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC----chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhh
Confidence 6778899999999999998654 6788999999999999999999999999887652 3321 1 122 223468
Q ss_pred CHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAG------LQPDVVSYALLINAYGKARREE-------EALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
.++++...+....... ..--..++..+...+.-.|-.. ++++.|.-........+...|-.+-++|.
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 8888888887766421 1111233333333333334333 33333333333322233333333322221
Q ss_pred ---HcC--CHH-HHHH-HHHHHHhCCCC--------------------CCHHHHHHHHHHHHh----c----CCHHHHHH
Q 007543 360 ---ISG--MVD-QART-VFKCMRRDRCS--------------------PDICSYTTMLSAYVN----A----SDMEGAEK 404 (599)
Q Consensus 360 ---~~g--~~~-~A~~-~~~~m~~~~~~--------------------p~~~~~~~li~~~~~----~----g~~~~A~~ 404 (599)
... -+. .-.. ++.+....+.- .+..+|..++..|.+ . .+...|..
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 111 000 0001 11112111111 123344444444333 1 23345666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 007543 405 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 484 (599)
Q Consensus 405 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 484 (599)
.++..++.. .-+..+|+.|.-. +..|++.-|..-|-+-.... +.+..+|..+.-.+.++.+++.|...|..... +
T Consensus 805 c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--L 879 (1238)
T KOG1127|consen 805 CCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--L 879 (1238)
T ss_pred HHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--c
Confidence 666665432 3366666666554 55567777776666655432 33456788888788888888888888888877 4
Q ss_pred CCCH-HHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 485 PPDQ-KAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 485 ~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
.|+. ..|....-.....|+.-++..++..
T Consensus 880 dP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 880 DPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred CchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4543 4455444445566777677666655
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=3.7e-05 Score=72.58 Aligned_cols=153 Identities=10% Similarity=-0.053 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-HHH
Q 007543 346 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI---CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFV-PN-VIT 420 (599)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~~ 420 (599)
.....+..+...+...|++++|...|+++.... +.+. ..+..+..++...|++++|...++++.+.... |. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445567778888889999999999999887652 1122 46677788889999999999999998865322 11 124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 421 YGTLIKGYAKV--------NNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 421 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
+..+..++.+. |+.++|.+.|+++.+. .|+.. .+..+..... ... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~~-------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RLA-------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HHH-------HHH
Confidence 55555566554 6788888888888754 34432 3322221111 000 000 012
Q ss_pred HHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 492 NILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 492 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
..+...+.+.|++++|...+++..+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 2456678899999999999998764433
No 116
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00074 Score=72.01 Aligned_cols=301 Identities=12% Similarity=0.113 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 249 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 249 (599)
|+..-...+.++...+-+.+-+++++++.-.+.. -+...-+.|+-...+ -+.....++.+++-.-+ .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD----a~~---- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD----APD---- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC----chh----
Confidence 4555566777888888888888888887643211 111122333322222 34445555555553111 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007543 250 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 329 (599)
Q Consensus 250 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 329 (599)
+.......+-+++|..+|++.. .+....+.|+.--++.++|.+.-+... ....|+.+..+-.+.|.+
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 3345556777888888887754 256667777777777777776665542 345688888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 330 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (599)
.+|++-|-+. .|+..|..+++...+.|.+++-.+.+...++..-.|... +.|+-+|++.++..+.++++.
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--
Confidence 8887766543 366778888888888888888888877776665555544 467778888888777665543
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------CCCcCHHHHHHHHHHHHhcCCH
Q 007543 410 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN--------------------GIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~ 469 (599)
.||......+.+-|...|.++.|.-+|...... .-..+..+|..+-.+|...+.+
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 456666666666666666666665554432100 0001233444444444444443
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 470 DSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 470 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.-| +|-..++.....-..-|+..|...|-+++...+++..
T Consensus 1266 rlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1266 RLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 322 1222223334444566777777788888888777764
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=0.00011 Score=66.70 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
..+-..+...|+-+.+..+....... .+.|.......+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33344444455555555444443221 12333444445555555566666666666555443 44555666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 007543 432 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 511 (599)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 511 (599)
|++++|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ .-|...-..|.-+...+|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666665555431 1224455555555555666666666665555422 223444445555555566666665554
Q ss_pred Hh
Q 007543 512 GN 513 (599)
Q Consensus 512 ~~ 513 (599)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=8.6e-05 Score=67.48 Aligned_cols=157 Identities=14% Similarity=0.150 Sum_probs=114.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 398 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 398 (599)
-+..|.+.|+++......+.+.. |. ..+...++.+++...++...+.. +.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34568888888776544433221 11 01223566778877777776653 5678888888899999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGY-AKVNN--LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 475 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (599)
+++|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|+..
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988875 33777888888764 66676 589999999998764 33577888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHH
Q 007543 476 YKEMESCGFPPDQKAK 491 (599)
Q Consensus 476 ~~~m~~~g~~p~~~~~ 491 (599)
|+++.+.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99998753 5555433
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=3.3e-05 Score=66.32 Aligned_cols=99 Identities=8% Similarity=-0.103 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 007543 386 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 465 (599)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 465 (599)
+......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666777777777777777777654 3466777777777777777777777777777643 3356677777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCH
Q 007543 466 NKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 466 ~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
.|++++|+..|+...+ +.|+.
T Consensus 105 ~g~~~eAi~~~~~Al~--~~p~~ 125 (144)
T PRK15359 105 MGEPGLAREAFQTAIK--MSYAD 125 (144)
T ss_pred cCCHHHHHHHHHHHHH--hCCCC
Confidence 7778777777777776 44544
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00068 Score=70.74 Aligned_cols=224 Identities=13% Similarity=0.132 Sum_probs=149.8
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--------C-CCCHHHHHHHHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG--------Y-APSVVSHTALMEAYG 184 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~-~p~~~~~~~li~~~~ 184 (599)
..|+-+.|.+....+. +...|..+..++.+..+++-|.-.+-.|.... . .|+ ..=....-...
T Consensus 740 tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 3455555555554443 34678899999999999988877776665321 0 111 22222333445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 264 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (599)
..|.+++|+.+|++-++ |..|=+.|-..|.+++|.++-+.-- . ..=..||......+-..++.+.
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~D---R---iHLr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKD---R---IHLRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcc---c---eehhhhHHHHHHHHHhhccHHH
Confidence 78999999999998765 4456677888999999998865431 1 1123467777777778888999
Q ss_pred HHHHHHHHHHc----------C-----------CCCCHH-HHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007543 265 ARKLFALMAER----------G-----------VQQSTV-TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINA 322 (599)
Q Consensus 265 A~~~~~~m~~~----------g-----------~~~~~~-~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 322 (599)
|++.|++.... . -.|... -|...+...|..+.|+.+|..... |-++++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 98888764211 0 011111 133344556777777777776653 5567788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 323 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
.|-.|+.++|-++-++ .-|....-.|...|-..|++.+|...|.+..
T Consensus 948 ~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred EeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8889999999887665 3366677788899999999999999887654
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.00037 Score=68.90 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=102.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 007543 147 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-ALTYQIILKLFVEANKFK 225 (599)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~ 225 (599)
.+...|++++|++.++.+... .+.|+..+......+.+.++..+|.+.++++... .|+ ......+..+|.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 344577888888888887765 2335666667778888888888888888888775 344 555566777888888888
Q ss_pred HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHH
Q 007543 226 EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQ 305 (599)
Q Consensus 226 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~ 305 (599)
+|..+++.....+ +.|...|..|..+|...|+..+|.....+.... .|++++|...+....
T Consensus 392 eai~~L~~~~~~~----p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---------------~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND----PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL---------------AGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC----CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh---------------CCCHHHHHHHHHHHH
Confidence 8888888876533 667778888888888888888887777665543 477777777777766
Q ss_pred Hc
Q 007543 306 RA 307 (599)
Q Consensus 306 ~~ 307 (599)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 64
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=0.00015 Score=65.98 Aligned_cols=159 Identities=14% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 396 (599)
..+-..+...|+-+....+........ +.|.......+....+.|++..|...|++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 556667777788777777777654332 455666677888888899999999999888764 377888999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
|+.++|..-|.+..+.. .-+...++.|.-.|.-.|+++.|..++......+ .-|..+-..+.-+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999998888764 2366677888888888899999999998888654 336777778888888999999998877
Q ss_pred HHH
Q 007543 477 KEM 479 (599)
Q Consensus 477 ~~m 479 (599)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=5.2e-05 Score=68.94 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=98.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL-FVEANK--FKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~--~~~A 227 (599)
.++.+++...++...+.. +.|...|..|...|...|++++|...|++..+..+. +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 667788888888877765 348889999999999999999999999999887544 67777777776 467677 5899
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
.+++++.++.+ +.+..++..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~d----P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD----ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999998754 5577888889999999999999999999988753
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.26 E-value=7.7e-05 Score=64.06 Aligned_cols=93 Identities=16% Similarity=0.044 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|+..|++.....+ .+..++..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3334444444455555555555444432 12444444444444455555555555554444322 134444444444444
Q ss_pred cCCHHHHHHHHHHhH
Q 007543 221 ANKFKEAEEVFMTLL 235 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~ 235 (599)
.|+.++|...|+..+
T Consensus 105 ~g~~~eAi~~~~~Al 119 (144)
T PRK15359 105 MGEPGLAREAFQTAI 119 (144)
T ss_pred cCCHHHHHHHHHHHH
Confidence 445555544444444
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.001 Score=72.75 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+...+-.+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|+.. ++++|..++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 44567778888888888888888888888877 66788888888888888 888888888777653
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 007543 392 AYVNASDMEGAEKFFRRLKQD 412 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~ 412 (599)
+...+++..+.++|.++...
T Consensus 179 -~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred -HHhhhcchHHHHHHHHHHhc
Confidence 55566777777777777665
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.0004 Score=75.71 Aligned_cols=145 Identities=14% Similarity=0.221 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHH
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV-----QQSTVT 283 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~ 283 (599)
..+..+..+|-+.|+.++|..+++++++.+ +.|..+.|.+...|... ++++|++++.+...+-+ ..-...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 566677778888899999999999888654 67788888888888888 88888888888765411 001112
Q ss_pred HHHHhcc-cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 284 YNSLMSF-ETNYKEVSKIYDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 284 ~~~ll~~-~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
|..++.. ..+.+.-..+.+.+... |...-+.++-.+-..|-..++++++..+++.+++.. +.|.....-++.+|.
T Consensus 192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2222222 23444555555555543 333445566677788888889999999999999876 556777777887776
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.19 E-value=0.00074 Score=72.94 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+...+-.|.....+.|..++|..+++...+.. +-+......+...+.+.+++++|+..+++..... +-+....+.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34444455555555555555555555554432 2223344444455555555555555555554431 223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555422 12244455555555555555555555555443
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.016 Score=61.82 Aligned_cols=219 Identities=19% Similarity=0.210 Sum_probs=139.1
Q ss_pred hchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 007543 83 VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 162 (599)
Q Consensus 83 ~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 162 (599)
...|..-+......-...+...++..+.. .++++.++|..+++-....+ ..+..+...+-.+|...|+.++|..+|+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl-~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSL-FRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHH-HHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34555544433333333344444444443 46788999998888776655 3577888899999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHH---------HHHHHHH
Q 007543 163 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFK---------EAEEVFM 232 (599)
Q Consensus 163 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~---------~A~~~~~ 232 (599)
+.... -|+......+..+|.+.+.+.+-.+.--+|-+. .+-+.+.+=++++.+...- ..+ -|.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 99987 467888888899999988876655544444443 2335555555555554432 222 2666777
Q ss_pred HhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHH---HHhcccCCHHHHHHHHHHHHHcC
Q 007543 233 TLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFA-LMAERGVQQSTVTYN---SLMSFETNYKEVSKIYDQMQRAG 308 (599)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~---~ll~~~~~~~~a~~~~~~m~~~g 308 (599)
.+++.. |---+..-.......+...|.+++|..++. ...+.-..-+...-+ .++...+++.+..++-.++...|
T Consensus 179 ~~l~~~--gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 179 KLLEKK--GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhccC--CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 777643 311122222223445567888999999994 333332222222222 24445789999999999999887
Q ss_pred C
Q 007543 309 L 309 (599)
Q Consensus 309 ~ 309 (599)
.
T Consensus 257 ~ 257 (932)
T KOG2053|consen 257 N 257 (932)
T ss_pred C
Confidence 3
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00071 Score=61.64 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=81.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---
Q 007543 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK--- 430 (599)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--- 430 (599)
-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3345566666666666655411 2222222233445556666666666666653 255555555555543
Q ss_pred -cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHH-HH
Q 007543 431 -VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE-AN 508 (599)
Q Consensus 431 -~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~ 508 (599)
.+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+. ..++.+...++-.....|+..+ ..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHH
Confidence 23566666666666642 45666666666666666666666666666666543 4445555555544444554433 23
Q ss_pred HHHHhc
Q 007543 509 ELLGNF 514 (599)
Q Consensus 509 ~~~~~~ 514 (599)
+.+.++
T Consensus 263 r~l~QL 268 (299)
T KOG3081|consen 263 RNLSQL 268 (299)
T ss_pred HHHHHH
Confidence 444444
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=0.0001 Score=62.73 Aligned_cols=104 Identities=10% Similarity=0.000 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
.....+...+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|..++++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344455556666677777777776666544 3356666666677777777777777777666543 33455666666667
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
...|++++|...+++..+ ..|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccchH
Confidence 777777777777777766 34544443
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.16 E-value=0.00053 Score=74.00 Aligned_cols=161 Identities=10% Similarity=0.063 Sum_probs=130.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007543 344 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 422 (599)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 422 (599)
...+...+..|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|+...++..... +-+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 4667889999999999999999999999999875 454 5677788889999999999999999999876 33777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 502 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 502 (599)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+. ..|....|+.++ +
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------H
Confidence 89999999999999999999999742 334779999999999999999999999999874 244445555443 3
Q ss_pred cHHHHHHHHHhcc
Q 007543 503 ERNEANELLGNFN 515 (599)
Q Consensus 503 ~~~~A~~~~~~~~ 515 (599)
+...-..+++.+.
T Consensus 231 ~~~~~~~~~~~~~ 243 (694)
T PRK15179 231 DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHHcC
Confidence 3444455666654
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0015 Score=59.12 Aligned_cols=186 Identities=16% Similarity=0.191 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhHhccCCC-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHhcccCCHHHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSP-LKPDQ-KMFHMMIYMYKKAGGYEKARKLFALMAERGVQ-QS-TVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~~~~ll~~~~~~~~a~~ 299 (599)
.++..+++..++...+.+ ..++. ..|..++-+....|+.+.|...++.+..+-.. +- ......++.+.+++++|.+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHH
Confidence 334444444443332333 33333 22334444555566666666666665543210 01 1123334445566666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 379 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 379 (599)
+++.+.... +.|.+++---+...-..|+.-+|++-+....+. +..|...|.-+.+.|...|++++|.-.++++.-..
T Consensus 108 ~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~- 184 (289)
T KOG3060|consen 108 YYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ- 184 (289)
T ss_pred HHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-
Confidence 666666654 446666766666666677777777777777665 36677888888888888888888888888776542
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 007543 380 SPDICSYTTMLSAYVNAS---DMEGAEKFFRRLKQD 412 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 412 (599)
+.++..+..+...+.-.| +.+-|.++|.+..+.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 234444444444433333 455666777766654
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0025 Score=58.16 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 007543 318 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN-- 395 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 395 (599)
.-...|++.|++++|++...... ..+ ....=+..+.+..+++-|.+.+++|..- .+..|.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence 33445666667777766655421 112 2222233445556666676666666653 245566655555543
Q ss_pred --cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHH-
Q 007543 396 --ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA- 472 (599)
Q Consensus 396 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A- 472 (599)
.+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++...... .-++.+...++-+-...|...++
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 24566677777776653 35666666666666667777777777777766543 23455555555444444544332
Q ss_pred HHHHHHHHh
Q 007543 473 VVWYKEMES 481 (599)
Q Consensus 473 ~~~~~~m~~ 481 (599)
.+.+.++..
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 334444433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00032 Score=69.35 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=101.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 007543 322 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDME 400 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 400 (599)
.+...|++++|+..++.++..- +.|+..+....+.+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3456677788888888877653 445556666677778888888888888887765 444 555666677888888888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 401 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+|..++++..... +-|+..|..|..+|...|+..++.....++ +...|+++.|+..+....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHH
Confidence 8888888777654 457778888888888888777766554443 556777888887777776
Q ss_pred hCCCCCCHHHH
Q 007543 481 SCGFPPDQKAK 491 (599)
Q Consensus 481 ~~g~~p~~~~~ 491 (599)
+. ..++..+|
T Consensus 453 ~~-~~~~~~~~ 462 (484)
T COG4783 453 QQ-VKLGFPDW 462 (484)
T ss_pred Hh-ccCCcHHH
Confidence 54 23444333
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00013 Score=72.66 Aligned_cols=125 Identities=12% Similarity=0.166 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
...|+..+...++++.|..+|+++.+.. |+ ....|++.+...++-.+|++++++..+..+ .+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 3478888888999999999999999873 45 445688889899999999999999987643 367777777888999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.++.+.|+++.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999998642 55667999999999999999999999988763
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=0.00025 Score=60.27 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=73.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
+......+...+.+.|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|..++++..+.++ .+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHH
Confidence 34455667777888888888888888877764 33677788888888888888888888888776543 35666667777
Q ss_pred HHHHcCCHHHHHHHHHHhHhc
Q 007543 217 LFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~ 237 (599)
.+...|++++|.+.|+..++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888877753
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0073 Score=54.85 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG---MVDQARTVFKCMRRD 377 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 377 (599)
..|...|.-+...|...|++++|.-.+++++-.. +.++..+..+.+.+.-.| ++..|.++|.+..+.
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4577788888888888888888888888877653 445555555655544333 566677777777664
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=1e-05 Score=50.30 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.5e-05 Score=49.19 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 206 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 206 (599)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=2.3e-05 Score=48.67 Aligned_cols=33 Identities=39% Similarity=0.776 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 452 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 452 (599)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00065 Score=67.86 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 464 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (599)
....|+..+...++++.|.++|+++.+.. |+. ...++..+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666667788899999999888764 553 3457777777888888999998888642 345667777778888
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 465 KNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+.++++.|+++.+++.+ ..|+. .+|..|..+|...|++++|...++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999988 56665 689999999999999999999998864
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.0011 Score=57.08 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007543 326 ARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI--CSYTTMLSAYVNASDME 400 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 400 (599)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|.. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555442 222 112223334455555555555555555554311111 12223344455555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 401 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (599)
+|+..++..... ......+....+.|.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443222 12233344455555555555555555543
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.86 E-value=0.0013 Score=56.71 Aligned_cols=126 Identities=20% Similarity=0.299 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS---VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA--LTYQII 214 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~l 214 (599)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|++.......|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344555555 3777888888888887763 223 223344557777888888888888888876533322 233445
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 215 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 215 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
...+...|++++|+..++.... . ......+....+.|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~---~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD---E--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC---c--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777788888888888866421 1 234456667788888888888888888653
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.6e-05 Score=47.43 Aligned_cols=32 Identities=31% Similarity=0.760 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 451 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 451 (599)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.0009 Score=67.18 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDA--GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
+......+++.+....+++.+..++.+.... ....-..|..+++..|.+.|..++++.+++.=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344444444444444444444444444332 11111122334455555555555555555444444555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555444443333334444433333333
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00051 Score=68.88 Aligned_cols=124 Identities=10% Similarity=0.126 Sum_probs=104.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007543 343 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 420 (599)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 420 (599)
+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34667778888888888888899999999988775 2223345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 466 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (599)
++.|++.+.+.|++..|.++...|..++...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999777777777777666666655
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.70 E-value=0.074 Score=53.74 Aligned_cols=210 Identities=13% Similarity=0.183 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA---RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 370 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (599)
.+++.++++.....-...+..+|..+...--.. +..+.....++++...-..--..+|..+++.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345556666555433233444444433221111 13555666666665543222334677788888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 371 FKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 371 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
|.+..+.+..+ ++...++++.-|| .++.+-|.++|+-=.+.- .-++.--...++-+.+.++-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999987777 7777888887666 578899999999755431 23444456778888999999999999999998877
Q ss_pred CcCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHhhcCcHHH
Q 007543 450 KPNQ--TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP----PDQKAKNILLSLAKTADERNE 506 (599)
Q Consensus 450 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~ 506 (599)
.|+. .+|..+++-=..-|+...+.++-+++... ++ +.-.+-..+++-|.-.+.+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhcccccc
Confidence 7774 59999999999999999999999888652 22 222334455566655554443
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.0016 Score=53.63 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYA--PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIIL 215 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll 215 (599)
++..++..+.+.|++++|.+.|+.+...... .....+..+...+.+.|++++|...|+.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666666667777777777666654211 013355556666666666666776666665533221 133455555
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 007543 216 KLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~ 236 (599)
.++.+.|+.++|.+.++++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 566666666666666666654
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.4e-05 Score=45.87 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00094 Score=51.96 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHh
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (599)
..+...|++++|...++++.+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33444444444444444444332 1122334444444444444444444444444321 112234444444444444444
Q ss_pred HHHHHHHHHH
Q 007543 471 SAVVWYKEME 480 (599)
Q Consensus 471 ~A~~~~~~m~ 480 (599)
+|...+.+..
T Consensus 86 ~a~~~~~~~~ 95 (100)
T cd00189 86 EALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.60 E-value=0.0011 Score=51.58 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 499 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 499 (599)
++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567788889999999999999998653 3345678888999999999999999999998753 444467888888999
Q ss_pred hcCcHHHHHHHHHhccCCC
Q 007543 500 TADERNEANELLGNFNHPN 518 (599)
Q Consensus 500 ~~g~~~~A~~~~~~~~~~~ 518 (599)
..|++++|...+....+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 9999999999998875443
No 152
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.16 Score=54.52 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=114.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEA--YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 228 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 228 (599)
.+++.+|.+-.+++.++ -|+.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34455555555555444 23322 2222222 34556666666555555444333 5556666666666666666666
Q ss_pred HHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc----cC---------CHH
Q 007543 229 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF----ET---------NYK 295 (599)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~---------~~~ 295 (599)
.+|++.... -|+......+..+|.+-+++.+-.+.--++-+ ..+.+...+-++++. .. -..
T Consensus 98 ~~Ye~~~~~-----~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 98 HLYERANQK-----YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHhh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 666665532 33444444555555555554432222222211 111223333333321 00 112
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 296 EVSKIYDQMQRAG-LQPDVVSYALLINAYGKARREEEALAVFE-EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKC 373 (599)
Q Consensus 296 ~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (599)
-|.+.++.+.+.+ .--+..-...-...+...|++++|..++. ...+.-..-+...-+.-++.+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3455566665543 11122223333445567888999999994 444443344555566778889999999999999999
Q ss_pred HHhCC
Q 007543 374 MRRDR 378 (599)
Q Consensus 374 m~~~~ 378 (599)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88875
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.58 E-value=0.0012 Score=52.06 Aligned_cols=71 Identities=11% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007543 358 FAISGMVDQARTVFKCMRRDRC-SPDICSYTTMLSAYVNAS--------DMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 428 (599)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 428 (599)
+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444445555544444 444445554444443321 1223344444444444445555554444443
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.56 E-value=0.0021 Score=54.54 Aligned_cols=94 Identities=9% Similarity=0.025 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
...+...+...|++++|.++|+.+....+. +..-|..|.-++-..|++++|++.|.......+. |+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 345666777788888888888887776533 6677788888888888888888888888777643 77777778888888
Q ss_pred cCCHHHHHHHHHHhHh
Q 007543 221 ANKFKEAEEVFMTLLD 236 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~ 236 (599)
.|+.+.|.+-|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888887764
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0047 Score=54.95 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=67.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQII 214 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 214 (599)
....+..+...|...|++++|...|++..+....+. ...|..+...+.+.|++++|+..+.+..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677888888999999999999998886543222 467888899999999999999999998875433 55666677
Q ss_pred HHHHHHcCCHHH
Q 007543 215 LKLFVEANKFKE 226 (599)
Q Consensus 215 l~~~~~~g~~~~ 226 (599)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 777777776433
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.0011 Score=61.60 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=58.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 471 (599)
..+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+..+.. .|. ...|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 345566666666666666654 235566666666666666666666666665543 333 3366666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH
Q 007543 472 AVVWYKEMESCGFPPDQKAKNI 493 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~~~~ 493 (599)
|++.|++.++ +.|+..+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 6666666666 5666655543
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.54 E-value=0.0035 Score=51.64 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
.++..+...+.+.|++++|.+.|.++....+. .....+..+..++.+.|+++.|.+.|+.+.... .+.+....++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHH
Confidence 45677888889999999999999999875432 124566778889999999999999999998642 111223456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
+...+.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8889999999999999999998763
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.54 E-value=0.0025 Score=63.87 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=55.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
.+...|++++|+..|+++++.. +-+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666665543 2245556666666666666666666666666432 2234456666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHH
Q 007543 472 AVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~~ 491 (599)
|+..|++.++ +.|+....
T Consensus 89 A~~~~~~al~--l~P~~~~~ 106 (356)
T PLN03088 89 AKAALEKGAS--LAPGDSRF 106 (356)
T ss_pred HHHHHHHHHH--hCCCCHHH
Confidence 6666666665 34444333
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.52 E-value=0.00011 Score=44.09 Aligned_cols=29 Identities=48% Similarity=0.716 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.51 E-value=0.0026 Score=50.15 Aligned_cols=81 Identities=21% Similarity=0.467 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCcCHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAKVN--------NLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
|-...|..|...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334455566666888888888888888888 788888888888877643 23445667777777777777777
Q ss_pred HHHHHHHHHh
Q 007543 456 FTTIMDAYGK 465 (599)
Q Consensus 456 ~~~li~~~~~ 465 (599)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0025 Score=56.72 Aligned_cols=105 Identities=17% Similarity=0.335 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 007543 345 RPTHKAYNILLDAFAI-----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 419 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 419 (599)
..+..+|..+++.|.+ .|.++=....++.|.+.|+..|..+|+.|++.+=+ |.+ .|...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccH
Confidence 3455566666666553 35566666666777777777777777777766543 221 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 468 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (599)
.. ++..-| -.+-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 108 fQ-~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQ-AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HH-HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 111111 12346678888888888888888888888888877665
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.012 Score=52.41 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 249 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 249 (599)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.++.. +.+...+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN----PKQPSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccHHHH
Confidence 455788888899999999999999999987654432 4578888899999999999999999998642 4456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 007543 250 HMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 250 ~~li~~~~~~g~~~~A~~~~~~ 271 (599)
..+...|...|+...+..-++.
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHH
Confidence 7788888888876665544443
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0023 Score=56.66 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=59.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP--SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
...+..+...+...|++++|...|++.......+ ...+|..+...|...|++++|+..+++.....+ ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 3455667777777888888888888876553222 234677788888888888888888888776432 2344455555
Q ss_pred HHHH-------HcCCHHHHHHHH
Q 007543 216 KLFV-------EANKFKEAEEVF 231 (599)
Q Consensus 216 ~~~~-------~~g~~~~A~~~~ 231 (599)
..+. ..|+++.|...+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH
Confidence 5555 555555444333
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0034 Score=60.64 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=94.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR-GGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
.+|..+++..-+.+..+.|+++|.+..+.+. -+...|-.....-.+ .++.+.|..+|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3577788888888889999999999886532 133444444444233 56677799999988776 45577788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPD---QKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+.+.|+.+.|..+|++.+.. +.++ ...|...++.=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999998742 2222 258888999889999999999988888764
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.40 E-value=0.0003 Score=54.09 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYA-PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
.|+++.|+.+|+++.+.... ++...|..+..+|.+.|++++|++++++ .+.+.. +....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555566666655554221 1233344455556666666666665555 221111 22222333455555555555555
Q ss_pred HHHH
Q 007543 230 VFMT 233 (599)
Q Consensus 230 ~~~~ 233 (599)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0052 Score=59.31 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI-SGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
.+|..++...-+.+..+.|..+|.+.++.+ ..+..+|......-.. .++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 346666666666666666777776666432 2233344443333222 34455566666666553 34455556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
+.+.++.+.|..+|++.... +.++. ..|...++.=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666544 12111 2555555555555666666666555554
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.35 E-value=0.00051 Score=52.78 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPR-PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 264 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (599)
.|++++|+.+|+++.+..+. ++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~----~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD----PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH----HCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC----CCCHHHHHHHHHHHHHhCCHHH
Confidence 68899999999999886553 2455556688999999999999999987 3221 2233455566889999999999
Q ss_pred HHHHHHH
Q 007543 265 ARKLFAL 271 (599)
Q Consensus 265 A~~~~~~ 271 (599)
|+++|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999875
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.34 E-value=0.048 Score=52.87 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
..+...+.+.|++++|..+|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344445555555555555555443
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.07 Score=51.71 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-----PNQT-IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+..+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...|++..|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555566666666666666665542111 1111 222223344455666666666666543
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.30 E-value=0.0099 Score=59.58 Aligned_cols=91 Identities=12% Similarity=-0.005 Sum_probs=63.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
...+...|++++|++.|++..+... .+...|..+..+|.+.|++++|+..+++.+...+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 4455566777777777777776643 25667777777777777777777777777765432 556666777777777777
Q ss_pred HHHHHHHHHhHhc
Q 007543 225 KEAEEVFMTLLDE 237 (599)
Q Consensus 225 ~~A~~~~~~~~~~ 237 (599)
++|...|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777653
No 171
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0054 Score=54.69 Aligned_cols=105 Identities=14% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 007543 380 SPDICSYTTMLSAYVNA-----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT 454 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (599)
..+..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 34666777777766543 5666666677777777777777777777777654 3321 11112211
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
..-| -.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 112 -----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12345699999999999999999999999999987664
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.28 E-value=0.007 Score=51.48 Aligned_cols=99 Identities=8% Similarity=-0.058 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+......+...+...|++++|..+|+.+....+. +..-|-.|.-++-..|++++|+..|......+ +.|...+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~----~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK----IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHH
Confidence 4445566777788999999999999999886544 56667788888999999999999999998643 567788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 252 MIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+..++.+.|+.+.|++.|+.....
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.27 E-value=0.17 Score=47.56 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 318 LLINAYGKARREEEALAVFEEMLDA--GVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3556677777777777777777664 112233355566677777777777776665443
No 174
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.39 Score=50.69 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=47.3
Q ss_pred HHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 109 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGD---FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185 (599)
Q Consensus 109 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 185 (599)
+.++...+.+..|.++-.|+.... ..+...|.....-+.+..+ -+-+..+=+++... . -.-.+|..+.+-...
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQ 519 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHh
Confidence 345666677778888877775432 1223555555666665532 22222222233221 1 244567777776677
Q ss_pred cCCHHHHHHHHHH
Q 007543 186 GGRYKNAEAIFRR 198 (599)
Q Consensus 186 ~g~~~~A~~l~~~ 198 (599)
.|+++-|..+++.
T Consensus 520 ~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 520 EGRFELARKLLEL 532 (829)
T ss_pred cCcHHHHHHHHhc
Confidence 7888777776543
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.01 Score=52.48 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 154 FNKAEKVLSFMN-KKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 154 ~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
+..+...+..+. ..+-......|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443 22222235678888889999999999999999998754333 235788888999999999999999
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHH
Q 007543 231 FMTLLDEEKSPLKPDQKMFHMMIYMYK-------KAGGYEKARKLFALM 272 (599)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~A~~~~~~m 272 (599)
++..+... +.....++.+...+. ..|+++.|+..+++.
T Consensus 95 ~~~Al~~~----~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN----PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC----cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99998642 344566777777777 677777666665544
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.17 E-value=0.13 Score=48.33 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=102.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAY---NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 395 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 395 (599)
....+.+.|++++|.+.|+++...- +-+.... -.++.+|.+.+++++|...|++..+........-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 4445567788888888888887753 2222222 34566778888888888888887765322122233333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 007543 396 --AS---------------D---MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 396 --~g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
.+ + ..+|+..|++++ .-|-...-..+|.+.+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 123333444433 3333333345555544444321 0111
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|......+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 124556688999999999999999863 22223355667778899999999998887765
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.16 E-value=0.033 Score=58.50 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHHh
Q 007543 345 RPTHKAYNILLDAFAIS--G---MVDQARTVFKCMRRDRCSPDI-CSYTTMLSAYVNA--------SDMEGAEKFFRRLK 410 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~~m~ 410 (599)
+.+...|...+.+.... + ....|..+|++..+. .|+- ..|..+..++... .+...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 55666666666654322 2 255677777777654 3443 3333332222211 12233344444333
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 411 QD-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 411 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
.. ....+...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|...+++... +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 22 12335566777766666678888888888888765 36777788888888888888888888888877 556655
Q ss_pred HHH
Q 007543 490 AKN 492 (599)
Q Consensus 490 ~~~ 492 (599)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 544
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.13 Score=50.27 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
+.+.+..++..|+..+....+.++. ++.-|..-...+..-|++++|+--.+.-++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3445556666777777766666432 455666666666667777777665555443
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.09 E-value=0.029 Score=58.88 Aligned_cols=139 Identities=8% Similarity=-0.013 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 007543 378 RCSPDICSYTTMLSAYVNA--S---DMEGAEKFFRRLKQDGFVPN-VITYGTLIKGYAKVN--------NLEKMMEIYDK 443 (599)
Q Consensus 378 ~~~p~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g--------~~~~A~~~~~~ 443 (599)
..+.+...|...+.+.... + +...|..+|++..+.. |+ ...|..+..++.... ++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4567889999998875443 2 3779999999999874 44 455665555443321 23344444444
Q ss_pred HHHC-CCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 444 MRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 444 m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
.... ....+...|..+.-.....|++++|...++++.+ +.|+...|..+...+...|+.++|...+++....++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4332 1234567888887777788999999999999999 5578888999999999999999999999997655554
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.037 Score=45.36 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIILKLF 218 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~ 218 (599)
.+..++-..|+.++|+.+|++....|.... ...+-.+.+.|...|++++|+.+|++....-+.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344556667778888888888777765533 3355566677777788888888887776643220 112222333456
Q ss_pred HHcCCHHHHHHHHHHhH
Q 007543 219 VEANKFKEAEEVFMTLL 235 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~ 235 (599)
...|+.++|.+.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 67778887777776654
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.00 E-value=0.39 Score=46.76 Aligned_cols=289 Identities=15% Similarity=0.182 Sum_probs=168.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHhHhccCCCCCCCHHH--HHHHHHHHHHcCC
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF--VEANKFKEAEEVFMTLLDEEKSPLKPDQKM--FHMMIYMYKKAGG 261 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 261 (599)
.|+-..|.++-.+-.+. +..|...+..++.+- .-.|+++.|.+-|+.|++ .|.... ...|.-.--+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhccc
Confidence 45566666655544322 333444455555443 235777777777777763 222111 1112222234455
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
.+.|..+-+..-.. - +.-...+..++...|..|+++.|+++.+.-..
T Consensus 170 reaAr~yAe~Aa~~--------------------------------A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 170 REAARHYAERAAEK--------------------------------A-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHHHhh--------------------------------c-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 55555544433321 1 11235567778888888888888888887654
Q ss_pred CC-CCCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007543 342 AG-VRPTHK--AYNILLDAFAI---SGMVDQARTVFKCMRRDRCSPDICSYT-TMLSAYVNASDMEGAEKFFRRLKQDGF 414 (599)
Q Consensus 342 ~g-~~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~ 414 (599)
.. +.++.. .-..|+.+-.. .-+...|...-.+..+ ..||.+--. .-..++.+.|+..++-.+++.+-+...
T Consensus 217 ~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 217 AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 32 234432 12223322211 2245555555444443 456654332 334588999999999999999988754
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKN 492 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 492 (599)
.|+ .. ++..+.+.|+. +..-+++..+ ..++|| ...--.+..+-...|++..|..--+.... ..|....|.
T Consensus 295 HP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~l 366 (531)
T COG3898 295 HPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYL 366 (531)
T ss_pred ChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHH
Confidence 444 32 22334455543 3333333321 123455 55777888888899999998888777776 688888888
Q ss_pred HHHHHHh-hcCcHHHHHHHHHhccCCCCCCCcc
Q 007543 493 ILLSLAK-TADERNEANELLGNFNHPNNEPGIN 524 (599)
Q Consensus 493 ~ll~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~ 524 (599)
.+.+.-. ..|+-.+++..+-+..+...+|...
T Consensus 367 LlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 367 LLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 8887654 4599999999999877666666543
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.6 Score=48.86 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
+|+.+...++....+++|.+.|..-. + ....+.++....++++-+.+-+.+ +.|....-.+.+
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~------~---~e~~~ecly~le~f~~LE~la~~L--------pe~s~llp~~a~ 860 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCG------D---TENQIECLYRLELFGELEVLARTL--------PEDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc------c---hHhHHHHHHHHHhhhhHHHHHHhc--------CcccchHHHHHH
Confidence 45555555555555555555554321 1 112333444444444444433333 334445555666
Q ss_pred HHHHcCCHHHHHHHH
Q 007543 255 MYKKAGGYEKARKLF 269 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~ 269 (599)
++.+.|.-++|.+.|
T Consensus 861 mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 861 MFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHhhchHHHHHHHH
Confidence 666666666666555
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.98 E-value=0.0033 Score=45.37 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+...+.+.|++++|.+.|+++.+.. +-+...|..+..++.+.|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456666777777777777777664 225666777777777777777777777776653
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.048 Score=51.09 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=57.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 225 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 225 (599)
+-+.+.+++.+|+..|.+.++.... |.+-|..-..+|++.|.++.|++-.+..+...+. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3445566777777777777766422 5666666677777777777777766666553322 3346666777777777777
Q ss_pred HHHHHHHHhHh
Q 007543 226 EAEEVFMTLLD 236 (599)
Q Consensus 226 ~A~~~~~~~~~ 236 (599)
+|.+.|++.++
T Consensus 167 ~A~~aykKaLe 177 (304)
T KOG0553|consen 167 EAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhhhc
Confidence 77777777664
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0036 Score=45.66 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=27.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
+.|++++|.++|+++..... -+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555554422 2455555555555555555555555555554
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.89 E-value=0.032 Score=54.25 Aligned_cols=131 Identities=14% Similarity=0.092 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCC-CCCHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEML----DAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRR----DRC-SPDIC 384 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~ 384 (599)
.|..|.+.|.-.|+++.|+...+.-+ +.|- ......+..+.+++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666677777766554422 1121 11223566666777777777777776665322 111 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQ----D-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
+..+|...|.-..++++|+.++.+-.. . ...-....|-+|..+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455566666666677777776665321 0 112244566677777777777777776655543
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.86 E-value=0.0055 Score=44.66 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
+.|++++|+++|+++.... +.+...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555443 334444455555555555555555555555443
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.85 E-value=0.0046 Score=45.25 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHh
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK-DFDSAVVWYKEMES 481 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 481 (599)
..+|..+...+...|++++|+..|++.++.+ +-+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555432 112335555555555555 45555555555443
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.12 Score=50.47 Aligned_cols=271 Identities=13% Similarity=0.063 Sum_probs=149.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
..+.+..++.+|+..+...++..+. +..-|..-...+.-.+++++|.--.+.-++.. .++ .....-.-+++...+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~---~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGF---SKGQLREGQCHLALS 131 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCc---cccccchhhhhhhhH
Confidence 3455677888888888888886544 45555555556666777777776655554321 111 123333444444555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 007543 261 GYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL-QPDVVSYALL-INAYGKARREEEALAVFEE 338 (599)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 338 (599)
+..+|.+.++.-. .+ ....++..++....... +|...++..+ ..++.-.|+.++|...-..
T Consensus 132 ~~i~A~~~~~~~~---------~~--------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------AY--------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHHHHhhhhh---------hh--------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 5555555554111 00 00111111111111111 1223333333 2334455666666666555
Q ss_pred HHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHhcCCHHHHH
Q 007543 339 MLDAGVRPTHKAYNILLD--AFAISGMVDQARTVFKCMRRDRCSPDICSY-------------TTMLSAYVNASDMEGAE 403 (599)
Q Consensus 339 m~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-------------~~li~~~~~~g~~~~A~ 403 (599)
.++.. . ...+...+. ++--.++.+.|...|++..+. .|+...- ..=..-..+.|++..|.
T Consensus 195 ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcc-c--chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 55432 1 112222222 233455666777777666554 2332211 11122345789999999
Q ss_pred HHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-H--HHHHHHHHHhcCCHhHHHHHHH
Q 007543 404 KFFRRLKQD---GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-I--FTTIMDAYGKNKDFDSAVVWYK 477 (599)
Q Consensus 404 ~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~--~~~li~~~~~~g~~~~A~~~~~ 477 (599)
+.|.+.+.. +.+|+...|........+.|+.++|+.--++..+. |.. + |-.-..++...++|++|++-++
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998753 45677788888888888999999999988887743 332 2 2222344556788899999998
Q ss_pred HHHhC
Q 007543 478 EMESC 482 (599)
Q Consensus 478 ~m~~~ 482 (599)
+..+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 88763
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.83 E-value=0.0053 Score=44.28 Aligned_cols=56 Identities=7% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666655432 11244555555555666666666666665554
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.81 E-value=0.088 Score=54.18 Aligned_cols=38 Identities=11% Similarity=0.340 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 303 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~ 303 (599)
..-+++++++|-.|+.......+...|++.+|-++|.+
T Consensus 620 i~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33445566666666666666666666666666665543
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.80 E-value=0.016 Score=56.25 Aligned_cols=273 Identities=13% Similarity=0.082 Sum_probs=153.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhH--hccCCCCCCCHHHHHHHHH
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSAL----TYQIILKLFVEANKFKEAEEVFMTLL--DEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~li~ 254 (599)
.-+|+.|+......+|+..++.|.+ |.. .|..|.++|.-.+++++|++++..=+ .+.-..-.-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888887754 433 45556666777777888877764432 1100000112233344555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 007543 255 MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR------ 328 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------ 328 (599)
.+.-.|.+++|+-.-.+-. +-+.++=+.+.+ ...+-.+...|-..|+
T Consensus 104 tlKv~G~fdeA~~cc~rhL---------------------d~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~ 156 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHL---------------------DFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEA 156 (639)
T ss_pred hhhhhcccchHHHHHHHHh---------------------HHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCC
Confidence 5556666666654322211 111111111110 0111122222222211
Q ss_pred --------------HHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCC-CCHH
Q 007543 329 --------------EEEALAVFEEML----DAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMR----RDRCS-PDIC 384 (599)
Q Consensus 329 --------------~~~A~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~ 384 (599)
++.|.++|.+=+ +.|- -.--..|..|.+.|.-.|+++.|+...+.-. +.|-. ....
T Consensus 157 pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRR 236 (639)
T KOG1130|consen 157 PEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERR 236 (639)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 123333333211 1110 0011246666677777889999987665422 22211 1235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh----hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcCHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLK----QDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV----N-GIKPNQT 454 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~ 454 (599)
.+..+..++.-.|+++.|.+.|+... +.| -.....+.-+|.++|.-...+++|+.++.+-.. . ...-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 67778888999999999999988753 222 123445666788888888899999988876432 1 1122355
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.+.+|..+|...|..++|+.+.+...+
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 788899999999999999888776643
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.78 E-value=0.0053 Score=44.89 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQS 201 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 201 (599)
..|..+...+.+.|++++|+..|++..+... .+...|..+..+|...| ++++|++.|++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555431 14445555555555555 45555555555443
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.75 E-value=0.44 Score=43.56 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=30.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHH
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHK----AYNILLDAFAISGMVDQA 367 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A 367 (599)
+...|.+.|.+..|..-++.+++. -|++. ..-.++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 556778888888888888887765 33332 345666777777766644
No 195
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.74 E-value=0.65 Score=45.50 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=34.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 355 LDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 434 (599)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 434 (599)
|.-+...|+...|.++-.+.. -|+..-|..-+.+++..++|++-.++-.. . -.+.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHHHCCCH
Confidence 333344444444444433332 24444455555555555555444443221 0 1223344445555555555
Q ss_pred HHHHHHHHH
Q 007543 435 EKMMEIYDK 443 (599)
Q Consensus 435 ~~A~~~~~~ 443 (599)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555544444
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.46 Score=43.74 Aligned_cols=142 Identities=8% Similarity=-0.013 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-----
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL----- 424 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 424 (599)
+.+.++..+...|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...|++..+..-+.|..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344555556666667777777777776655566677777777777777777777777766543323333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 494 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 494 (599)
...|.-+.++..|...+.+....+ ..|....|.-.-++.-.|+..+|++.++.|.+ ..|.+.+.+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 233445567777777777776543 22333334333344456778888888888877 56666555543
No 197
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.72 E-value=0.74 Score=45.77 Aligned_cols=378 Identities=13% Similarity=0.209 Sum_probs=196.4
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 123 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
++-+.+.+. |.|...|..|+.-|...|..++.++++++|..- ++--..+|..-|++-....++.....+|.+....
T Consensus 30 rLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 555555443 467788999999999999999999999999864 2334568999999888889999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHhHhccCCCCCCC-HHHHHHHHHHHH---H------cCCHHHHH
Q 007543 203 GPRPSALTYQIILKLFVEANKF------KEAEEVFMTLLDEEKSPLKPD-QKMFHMMIYMYK---K------AGGYEKAR 266 (599)
Q Consensus 203 g~~p~~~t~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~---~------~g~~~~A~ 266 (599)
... ...|...+.--.+.+.. -...+.|+-.+. ..++.|- ...|+..+..+- . +.+++...
T Consensus 106 ~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~--~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 106 SLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLG--CAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHh--cccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 544 55566666544443321 122234444443 3445443 344555544332 2 33455666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhcc------------cC----CHHHHHHHHHHHHH--cCCCC----CHHH---------
Q 007543 267 KLFALMAERGVQQSTVTYNSLMSF------------ET----NYKEVSKIYDQMQR--AGLQP----DVVS--------- 315 (599)
Q Consensus 267 ~~~~~m~~~g~~~~~~~~~~ll~~------------~~----~~~~a~~~~~~m~~--~g~~~----~~~~--------- 315 (599)
..|.+|....+..-...|+-.-.. .| -+-.|.+.++++.. .|... +..+
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 777777764322111222211100 01 12233333333321 11100 0000
Q ss_pred -----------------------------HHHHHH--------------HHHhcCCHHHHHHHHHHHHHCCCCCC-----
Q 007543 316 -----------------------------YALLIN--------------AYGKARREEEALAVFEEMLDAGVRPT----- 347 (599)
Q Consensus 316 -----------------------------~~~li~--------------~~~~~g~~~~A~~~~~~m~~~g~~~~----- 347 (599)
|+..+. -+...++-+.|+.....-... .|+
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~l 339 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFL 339 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeH
Confidence 111110 112223334444433322111 111
Q ss_pred ----------HH---HHHHHHHHHHH---cCCHHHHHHH------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 348 ----------HK---AYNILLDAFAI---SGMVDQARTV------FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 405 (599)
Q Consensus 348 ----------~~---~~~~li~~~~~---~g~~~~A~~~------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (599)
.. +|..++..+.+ .++-+.+... ..+..-.....-...|...+.+-.+..-.+.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 11 12233333221 1222222111 11111111122345666677776777777777777
Q ss_pred HHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 406 FRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF-TTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 406 ~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
|-++.+.+ +.+++..+++++..++ .|+..-|.++|+.=..+ .||...| ...+.-+.+.++-+.|..+|+..++.
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r- 495 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER- 495 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-
Confidence 77777666 4566777777776655 46666777777654432 3444433 44555666667777777777755432
Q ss_pred CCCC--HHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 484 FPPD--QKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 484 ~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
+..+ ...|..+++.-..-|+...+..+-+.+
T Consensus 496 ~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 496 LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 2222 345666666666666665555554443
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.71 E-value=0.071 Score=43.70 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPN--VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMDAY 463 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~ 463 (599)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++.... .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445556666666666666665554432 234445556666666666666666665543 122 11222233345
Q ss_pred HhcCCHhHHHHHHHHHH
Q 007543 464 GKNKDFDSAVVWYKEME 480 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~ 480 (599)
...|+.++|+.++-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 56666666666665443
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.69 E-value=0.37 Score=41.96 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Q 007543 142 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIILKLFVE 220 (599)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~ 220 (599)
..|.+.+.+.|+..+|+..|++...--+..|....-.+.++....+++..|...++++-+..+. .++.+...+.+.+..
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence 3444445555555555555544443333334444444444444445555555444444433210 011122333444444
Q ss_pred cCCHHHHHHHHHHhH
Q 007543 221 ANKFKEAEEVFMTLL 235 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~ 235 (599)
.|+..+|+.-|+..+
T Consensus 173 ~g~~a~Aesafe~a~ 187 (251)
T COG4700 173 QGKYADAESAFEVAI 187 (251)
T ss_pred cCCchhHHHHHHHHH
Confidence 444444444444444
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.66 E-value=0.39 Score=41.83 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHH
Q 007543 345 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG---FVPNVITY 421 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~ 421 (599)
.|++..--.|..+..+.|+..+|...|++...--...|....-.+..+....+++..|...++++.+.+ -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 566666667777777888888888888777664445566677777777777788888887777776542 23333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 422 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
-.+...|...|+..+|+..|+..... -|+...-.-....+.+.|+.++|..-+...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34567777778888888888877754 455544444444566777666655444433
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.1 Score=47.79 Aligned_cols=143 Identities=10% Similarity=0.093 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML---- 390 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li---- 390 (599)
.-+.++..+.-.|.+.-....+.+.++...+.++.....|...-.+.|+.+.|...|+...+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456667777778888888999999887767788888899999999999999999999776653344444444443
Q ss_pred -HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 007543 391 -SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 460 (599)
Q Consensus 391 -~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (599)
..|.-.+++..|...+.++...+ ..|+...|.-.-+..-.|+..+|.+.++.|.+. .|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34566778888888888887665 336666665555555679999999999999865 46555544433
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.11 Score=48.99 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHH
Q 007543 380 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQTIF 456 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~ 456 (599)
+-|...|..|..+|...|+.+.|..-|.+..+.. .+|...+..+..++.... ...++..+|+++...+ +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4467777777777888888888877777776653 346666666666655433 4566777787777553 3345566
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhC
Q 007543 457 TTIMDAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
.-|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66667777788888888888888774
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.52 Score=46.72 Aligned_cols=175 Identities=17% Similarity=0.116 Sum_probs=106.7
Q ss_pred CCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCC--CCHHhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCH
Q 007543 99 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWD--FNEMDFLMLITAYGK---QGDFNKAEKVLSFMNKKGYAPSV 173 (599)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 173 (599)
.+.++.+...+..++...+|+...++.+-+......+ .+...-....-++-+ .|+.++|++++..+....-.++.
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 4566777778888888889998888888887664221 112222244455556 78899999999886665566788
Q ss_pred HHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-H---HHHHHH---HH-hHh
Q 007543 174 VSHTALMEAYGR---------GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF-K---EAEEVF---MT-LLD 236 (599)
Q Consensus 174 ~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~---~A~~~~---~~-~~~ 236 (599)
.+|..+.+.|-. ....++|+..|.+.-+. .||.++=..+...+.-.|.. + +..++- .. +.+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 888888877633 12367788888776553 34443322233333333321 1 222222 11 112
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 237 EEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 237 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
.+...-..|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 222223455666777788888888888888888887765
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.21 Score=47.18 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHh
Q 007543 158 EKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN---KFKEAEEVFMTL 234 (599)
Q Consensus 158 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~ 234 (599)
..-++.-...+ +-|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++.... ...++..+|+++
T Consensus 142 ~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 33344334443 3488899999999999999999999999988753 235666666666554332 456888999999
Q ss_pred HhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 235 LDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
+..+ +.|+.+...|...+...|++.+|...++.|.+..
T Consensus 220 l~~D----~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 220 LALD----PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HhcC----CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8654 5677777788888999999999999999998763
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.42 E-value=0.094 Score=49.82 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 253 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 253 (599)
|...+..+.+.|++++|+..|+.+.+.-+... ...+-.+..+|...|++++|...|+.+++... +-+.....+-.+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHH
Confidence 33333333445566666666666655432211 23444555556666666666666666654211 1111223333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 007543 254 YMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..+...|+.++|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555566666666666655543
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.38 E-value=0.068 Score=50.76 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=78.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTY 211 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~ 211 (599)
...|..-+..+.+.|++++|...|+.+.+.- |+ ..++..+...|...|++++|...|..+.+.-+. .....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3457777777777899999999999999873 33 358889999999999999999999999875322 134455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
..+...+...|+.+.|.++|+.+++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56677788999999999999999864
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.29 E-value=1.8 Score=45.43 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQ-DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
..|..|..--...|..+.|++.--.+.. ..+-|....|+.|.-+-|....+...-+.|-++...
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 3444444455566777777775544443 235567777777766666666665555555555543
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.22 E-value=0.021 Score=42.17 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=40.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 204 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 204 (599)
..|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.|++..+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4566777777777777777776432 566677777777777777777777777776543
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.22 E-value=0.38 Score=43.99 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 007543 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDI----CSYTTMLSAYVNASDME 400 (599)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 400 (599)
+...|.+.|.+..|..-++.+++. -|++ .....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 345566666666666666666554 2222 23344445555555554
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.15 E-value=0.038 Score=40.81 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=30.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 427 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555566666666666655442 22344555555556666666666666666655
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.11 E-value=1.7 Score=43.24 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=94.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 318 LLINAYGKARREEEALAVFEEMLDAG---VRPTHKAYNILLDAFAI---SGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
.++-+|....+++..+++.+.+...- +......--....++.+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777778888888888876531 11122222334445555 7788888888887655555677777777666
Q ss_pred HHHh---------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHH---HH-HHHCCC---Cc
Q 007543 392 AYVN---------ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN----LEKMMEIY---DK-MRVNGI---KP 451 (599)
Q Consensus 392 ~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~~~---~~-m~~~~~---~p 451 (599)
.|-. ....++|...|.+.-+. .||..+--.++..+.-.|. -.+..++- .. +.+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5432 12367777777766554 3444332222222223332 11222222 22 112332 23
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 007543 452 NQTIFTTIMDAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
|.-.+.+++.++.-.|+++.|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4446678888888999999999999999874
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.05 E-value=0.12 Score=42.75 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
|..++..++.++++.|+.+....+++..- |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34556666666666666666666665432 11111000 0000 0112356788888888888
Q ss_pred HHHhcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 007543 462 AYGKNKDFDSAVVWYKEMES-CGFPPDQKAKNILLSLA 498 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~ 498 (599)
+|+.+|++..|+++.+...+ .+++.+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888754 56777788888887643
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.96 E-value=0.055 Score=46.49 Aligned_cols=70 Identities=27% Similarity=0.307 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR-----DRCSPDICS 385 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 385 (599)
....++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45667777888899999999999888876 66788889999999999999999988887644 377776655
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.92 E-value=0.036 Score=41.60 Aligned_cols=61 Identities=18% Similarity=0.453 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVN----GI-KPN-QTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666555421 10 111 2355556666666666666666665553
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.92 E-value=0.082 Score=45.42 Aligned_cols=70 Identities=11% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----hCCCCCCHHHH
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKAK 491 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 491 (599)
...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445555666777777777777776542 3345577777777777777777777776663 34666666553
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.89 E-value=2 Score=42.20 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
.+.+..+.-+...|+...|.++-++.. .|+..-|-..+.+++..++|++-.++... . -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 355666777888999999998877664 57999999999999999999987776432 1 2347788999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
.+.|+..+|..++.++ ++ .--+..|.+.|++.+|.+.--+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988772 22 2234455666666666555443
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=95.80 E-value=0.35 Score=41.59 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=58.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
...-+-..|++++|..+|.-+.-.++. +..-|..|..++-..+++++|+..|......+.. |+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 344445667777777777776665433 5556666667777777777777777666544322 44444455666777777
Q ss_pred HHHHHHHHHHhHh
Q 007543 224 FKEAEEVFMTLLD 236 (599)
Q Consensus 224 ~~~A~~~~~~~~~ 236 (599)
.+.|+..|...++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777764
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.67 E-value=0.24 Score=41.07 Aligned_cols=100 Identities=9% Similarity=0.091 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007543 347 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 426 (599)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 426 (599)
|..++..++.++++.|+++....+.+..= |+..+... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 46788999999999999999888886543 33322100 0000 1134567899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHhc
Q 007543 427 GYAKVNNLEKMMEIYDKMR-VNGIKPNQTIFTTIMDAYGKN 466 (599)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~ 466 (599)
+|+..|++..|+++.+... ..+++.+..+|..|+.-+...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887 457777888898888755443
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=4 Score=43.52 Aligned_cols=335 Identities=13% Similarity=0.107 Sum_probs=172.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR--YKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
.+++-+...+.+..|.++-.-+...-.. ....|.....-+.+..+ -+++++-.++=..... ....+|..+.+-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 4677777888888888887766542111 14555566666666532 2233333322222212 344567777777778
Q ss_pred cCCHHHHHHHHHHhHhcc-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEE-KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
.|+.+.|..+++.=.... ...+-.+..-+...+.-..+.|+.+-...++-.+... -+. ..+.....+.-.|..
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~---s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR---SSLFMTLRNQPLALS 593 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH---HHHHHHHHhchhhhH
Confidence 888888887765321100 0000001112333344444555555555544444332 011 111111223334444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHH----HCCCCCCHHHHHHHHHHHHHcCCH----------
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF-EEML----DAGVRPTHKAYNILLDAFAISGMV---------- 364 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----~~g~~~~~~~~~~li~~~~~~g~~---------- 364 (599)
+|.++.+.. |.. .+-+.|-...+...+-.+. +... ..|..|+. ....+.+.+....
T Consensus 594 lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 594 LYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHH
Confidence 554444321 111 1222232222222221111 1100 11222222 2333444443331
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 365 DQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 365 ~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (599)
.+-+.+.+.+... |..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 1112222222221 223333455666677788899999988877765 57888888888999999999887776665
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 444 MRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 444 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
+. .+.-|.-.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++--+
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 53 245577788899999999999988876532 11 345566677777777665544
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.52 E-value=0.048 Score=40.90 Aligned_cols=63 Identities=22% Similarity=0.435 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 210 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL---KPD-QKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 210 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+|+.+...|...|++++|+..|++.++. .... .|+ ..+++.+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555544432 0001 111 3456667777777777777777776654
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.51 Score=46.41 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=91.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKK-----GYAP---------SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL 209 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~-----g~~p---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 209 (599)
-.+.|.+.|++..|..-|++.... +..+ -..+++.|.-+|.+.+++.+|++..++.+..+. +|.-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cchh
Confidence 356788899999999888875431 1111 234678888899999999999999999888753 4777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 007543 210 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK-ARKLFALMAE 274 (599)
Q Consensus 210 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 274 (599)
.+---..++...|+++.|+..|+++++.. +.|-.+-+.|+.+-.+.....+ ..++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~----P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE----PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777788999999999999999998653 4445555556666555555443 4667777764
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.34 E-value=2.2 Score=38.99 Aligned_cols=198 Identities=19% Similarity=0.089 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDA-GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS- 391 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~- 391 (599)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455555555556666555555555431 113334445555555555555666666666555432222 111111222
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCC
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGF--VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-NQTIFTTIMDAYGKNKD 468 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 468 (599)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45566666666666666543211 0122333333333455566666666666665431 12 24455556666666666
Q ss_pred HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 469 FDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
++.|...+..... ..|+ ...+..+...+...+..+++...+.+..
T Consensus 218 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666655 2333 2333333333334555666665555543
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.28 E-value=1.4 Score=36.24 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=74.7
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 298 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~ 298 (599)
.-.|..++..++..+... +.+..-+|-+|--....-+-+-..++++.+-+. -| ++.+++.+.+.
T Consensus 13 ildG~V~qGveii~k~v~------Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD-------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN------SSNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD-------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH------HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcC------cCCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------chhhcchHHHH
Confidence 345677777777777764 223333444333333333333344444333221 01 22356666665
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007543 299 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 378 (599)
Q Consensus 299 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (599)
.-+-.+- .+......-++.+.+.|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 5554432 244556667777888888888888888876544 6777778888888888888888888888887776
Q ss_pred C
Q 007543 379 C 379 (599)
Q Consensus 379 ~ 379 (599)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.26 E-value=3.7 Score=41.16 Aligned_cols=219 Identities=12% Similarity=0.157 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHH
Q 007543 292 TNYKEVSKIYDQMQRAGLQ----PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY-------NILLDAFAI 360 (599)
Q Consensus 292 ~~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------~~li~~~~~ 360 (599)
.+.+++..+-+.+....+. .-+.++..++....+.++...|.+.+.-+... .|+...- ..+-+..|.
T Consensus 273 ~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~ 350 (549)
T PF07079_consen 273 SDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCE 350 (549)
T ss_pred cChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhc
Confidence 3455555554444433211 12245666777777777777777777766554 3443322 223333331
Q ss_pred c----CCHHHHHHHHHHHHhCCCCCC-HHHHH-HHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHH----HHHH
Q 007543 361 S----GMVDQARTVFKCMRRDRCSPD-ICSYT-TMLSAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLI----KGYA 429 (599)
Q Consensus 361 ~----g~~~~A~~~~~~m~~~~~~p~-~~~~~-~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~ 429 (599)
. -+..+=+.+++......+... .+.|- .-..-+-+.|. -++|+++++.+.+-. .-|...-|.+. ..|.
T Consensus 351 DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 351 DDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYK 429 (549)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 1 123333444444444322111 11111 11123344454 888999999887642 22433333222 2222
Q ss_pred h---cCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHH--HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007543 430 K---VNNLEKMMEIYDKMRVNGIKPNQ----TIFTTIMDA--YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 500 (599)
Q Consensus 430 ~---~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 500 (599)
. ...+.+-.++-+-+.+.|++|-. ..-|.|.+| +..+|++.++.-.-.-+.+ +.|++.+|..+.-.+..
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHH
Confidence 2 12333334444444466877643 345555554 5678999999988888877 89999999999888899
Q ss_pred cCcHHHHHHHHHhcc
Q 007543 501 ADERNEANELLGNFN 515 (599)
Q Consensus 501 ~g~~~~A~~~~~~~~ 515 (599)
..++++|..++.++.
T Consensus 508 ~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 508 NKRYQEAWEYLQKLP 522 (549)
T ss_pred HhhHHHHHHHHHhCC
Confidence 999999999999874
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=95.24 E-value=0.73 Score=39.67 Aligned_cols=94 Identities=19% Similarity=0.130 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 177 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 177 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
......+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|....... ..|...+-....+|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~----~~dp~p~f~agqC~ 115 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL----KNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCCCccchHHHHH
Confidence 34455566899999999999998876554 55566778888888999999999998886543 23334456678899
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 007543 257 KKAGGYEKARKLFALMAER 275 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~ 275 (599)
...|+.+.|+..|....++
T Consensus 116 l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 116 LLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHhCCHHHHHHHHHHHHhC
Confidence 9999999999999988774
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.16 E-value=3 Score=43.55 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 007543 193 EAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL 234 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 234 (599)
+.-+++|++.|-.|+... +...++-.|++.+|-++|.+-
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 334567777777777654 334556677888888887654
No 227
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.08 E-value=3.2 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 007543 331 EALAVFEEMLDAGVRPTHKAYNI 353 (599)
Q Consensus 331 ~A~~~~~~m~~~g~~~~~~~~~~ 353 (599)
+.+.+++.|.+.|+..+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34445555555555555444433
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.84 E-value=0.44 Score=44.29 Aligned_cols=117 Identities=17% Similarity=0.283 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 310 QPDVVSYALLINAYGKA-----RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC 384 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (599)
+.|..+|...+..+... +.++-....++.|.+.|+..|..+|+.|++.+=+..-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 45666777777666433 45666666677777777777777777777665432211 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN-LEKMMEIYDKMR 445 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 445 (599)
.+-...-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+- ..+..++.-.|.
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111111121 2335678888999999999999988888998887774 334444444444
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.81 E-value=0.55 Score=47.30 Aligned_cols=66 Identities=12% Similarity=-0.048 Sum_probs=49.9
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 135 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 135 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+.+...++.+...|.+.|++++|...|++..+.. |+. .+|+.+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456677788888888888888888888877763 442 35888888888888888888888887764
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.75 E-value=5.1 Score=40.14 Aligned_cols=147 Identities=12% Similarity=0.222 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHH
Q 007543 348 HKAYNILLDAFAISGMVDQARTVFKCMRRDR-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY-GTLI 425 (599)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 425 (599)
..+|...++...+..-++.|..+|-+..+.+ ..+++..+++++..++ .|+..-|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566777777777777888888888888777 5677777777777665 46667777777754433 2343333 4455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 500 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 500 (599)
..+.+.++-+.|..+|+..++. +..+ ..+|..+|+-=..-|+...+..+-+.|.+ +-|...+...+.+-|.-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 6667778888888888865542 2223 45888888888888888888888888877 67777777766665543
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.70 E-value=2.3 Score=44.42 Aligned_cols=23 Identities=13% Similarity=0.220 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+.-.+.-.+++++|.+.|..+.+
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHh
Confidence 34444444455555554444443
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.63 E-value=2.5 Score=44.22 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 362 GMVDQARTVFKCMRRDRCSPDICSYTTMLS-AYVNASDMEGAEKFFRRLKQDG---FVPNVITYGTLIKGYAKVNNLEKM 437 (599)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A 437 (599)
...+.|.++++.+.++ -|+...|...-. .+...|++++|++.|++..... .+.....+--+...+.-..++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455666666666554 455444443332 4455566666666666544210 011222333445555566666666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCCH-------hHHHHHHHHH
Q 007543 438 MEIYDKMRVNGIKPNQTIFTTIMDAY-GKNKDF-------DSAVVWYKEM 479 (599)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~-------~~A~~~~~~m 479 (599)
.+.|..+.+.. .-...+|.-+..+| ...|+. ++|.++|++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 66666666432 11222333222222 234544 5566666555
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.61 E-value=1.1 Score=45.34 Aligned_cols=66 Identities=23% Similarity=0.146 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH----KAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346678999999999999999999999998886 4553 45899999999999999999999998875
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.57 E-value=0.29 Score=45.45 Aligned_cols=106 Identities=16% Similarity=0.364 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 007543 345 RPTHKAYNILLDAFAIS-----GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 419 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 419 (599)
..|..+|.+.+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 45666777777666543 456666667777777777778777777776554321 222211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
+....-.|- .+-+-+++++++|..+|+.||..+-..|++++++.+..
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111222 23356899999999999999999999999999988764
No 235
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.56 E-value=2.2 Score=35.06 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
.+..+.+.|+-+.-.++++++.+.+ ++++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444444321 3444444444444444454444444444444444
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.55 E-value=2.5 Score=35.75 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 396 (599)
..++..+.+.+.......+++.+...+ ..+....+.++..|++.. ..+....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555666666666666666555 345556666666666543 2233333321 01222233344455555
Q ss_pred CCHHHHHHHHHHH
Q 007543 397 SDMEGAEKFFRRL 409 (599)
Q Consensus 397 g~~~~A~~~~~~m 409 (599)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=2.5 Score=41.79 Aligned_cols=136 Identities=16% Similarity=0.161 Sum_probs=85.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-cC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-ET-NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 330 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (599)
.+.|.+.|++..|..-|++.... |.. .+ +.++.. .... .-..+++.+.-+|.+.+++.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~~~~~~~~ee~~-~~~~-------~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LEYRRSFDEEEQK-KAEA-------LKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hhccccCCHHHHH-HHHH-------HHHHHhhHHHHHHHhhhhHH
Confidence 35678888888888888876542 000 00 001111 1111 12345777888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCH-HHHHHHHHH
Q 007543 331 EALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYT-TMLSAYVNASDM-EGAEKFFRR 408 (599)
Q Consensus 331 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~-~~A~~~~~~ 408 (599)
+|+..-++.+..+ ++|+...-.-..+|...|+++.|+..|+++.+. .|+...-. .++..-.+.... +...++|..
T Consensus 275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888876 777777777788888888888888888888865 45444333 333333333333 333556666
Q ss_pred Hhh
Q 007543 409 LKQ 411 (599)
Q Consensus 409 m~~ 411 (599)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 653
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=3.8 Score=37.60 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCCHHHHHH
Q 007543 422 GTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMESCG---FPPDQKAKNI 493 (599)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ 493 (599)
...-..+.+..++++|-..+.+-.. ..-.++. ..|...|-.+....++..|.+.++.--+-+ -+-+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 3344445555555555544443221 1111221 234445555555667777777776643311 1223355666
Q ss_pred HHHHHhhcCcHHHHHHHHH
Q 007543 494 LLSLAKTADERNEANELLG 512 (599)
Q Consensus 494 ll~~~~~~g~~~~A~~~~~ 512 (599)
|+.+| ..|+.+++..++.
T Consensus 234 LL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHh-ccCCHHHHHHHHc
Confidence 66665 3556666655543
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.51 E-value=2.6 Score=35.68 Aligned_cols=126 Identities=11% Similarity=0.142 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+..+.++. .++......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3456677777788888888888888776 367778888888888764 3444455442 1233334457777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN-KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 499 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 499 (599)
.+.++++..++.++.. |...+..+... ++++.|.+++++ ..+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 8888888888877631 22233333333 778888777765 225556776666554
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=94.40 E-value=3.9 Score=41.47 Aligned_cols=111 Identities=5% Similarity=0.005 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVW 475 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 475 (599)
.+..+|.++-++..+.+ +-|......+..+....++++.|...|++.... .|| ..+|......+.-+|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567777777777776 458888888888888888899999999998864 566 45777777778888999999999
Q ss_pred HHHHHhCCCCCCHHH---HHHHHHHHhhcCcHHHHHHHHHh
Q 007543 476 YKEMESCGFPPDQKA---KNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 476 ~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
+++..+ ..|.... ....++.|...+ .++|.+++-+
T Consensus 395 i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 999776 5665533 233344566655 6777777655
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.06 E-value=1.3 Score=36.17 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=56.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHHc
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-GPRPSAL---TYQIILKLFVEA 221 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~---t~~~ll~~~~~~ 221 (599)
-++...|+++.|++.|.+....- +.....||.-.+++.-.|+.++|++-+++..+. |.+ ... .|..-...|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 46667788888888888777653 236777888888888888888888877777653 222 211 222233345555
Q ss_pred CCHHHHHHHHHHhHh
Q 007543 222 NKFKEAEEVFMTLLD 236 (599)
Q Consensus 222 g~~~~A~~~~~~~~~ 236 (599)
|+.+.|..-|+..-+
T Consensus 129 g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQ 143 (175)
T ss_pred CchHHHHHhHHHHHH
Confidence 666666666665543
No 242
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.97 E-value=7.7 Score=39.04 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHhhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 398 DMEGAEKFFRRLKQDGFVPN----VITYGTLIKG--YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
.+.+-+++-+-+.+.|+.|- ...-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 34444444444455565542 2334444443 3456777777655555543 56777777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 472 AVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
|..++.. +||+..++..-+
T Consensus 514 A~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 514 AWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred HHHHHHh-----CCCchhhHHHHH
Confidence 7777765 466666655433
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.85 E-value=3 Score=35.11 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
.+.|++++|.+.|+.+...-..| +-...+--.|+.+|.+.+++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34455555555555554321111 1112333445555555555555555555555443
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.73 E-value=7.2 Score=37.86 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHH
Q 007543 401 GAEKFFRRLKQDGFVPNVITYGT 423 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p~~~~~~~ 423 (599)
++.++++.+.+.|+++....|..
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHcCCccccccccH
Confidence 44445555555555544444443
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=6.6 Score=37.29 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=67.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 147 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE 226 (599)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 226 (599)
.....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 344566667777777666655322 3445556666777777777777777666433222222222233444445554444
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 227 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 227 A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
...+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aad-----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD-----PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444321 33566666677777777777777776655543
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.51 E-value=2.7 Score=34.48 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=58.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 007543 322 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC---SYTTMLSAYVNASD 398 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~ 398 (599)
++...|+.+.|++.|.+.+..- +.....||.-..++--.|+.++|++-+++..+........ .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566777788888877776542 4566677777777777778887777777766542222222 22223335666777
Q ss_pred HHHHHHHHHHHhhCC
Q 007543 399 MEGAEKFFRRLKQDG 413 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~ 413 (599)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=2.2 Score=40.96 Aligned_cols=154 Identities=12% Similarity=0.013 Sum_probs=101.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCH
Q 007543 324 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY----TTMLSAYVNASDM 399 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~ 399 (599)
--.|+..+|-..++++++. .+.|...++-.=.+|.-.|+.+.-...++++... -.+|...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567777888888888765 3677777877778888888888888888877653 13343222 2233355678888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 400 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN---GIKPNQTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
++|++.-++..+.+ +.|...-.++...+--.|++.++.++..+-... +--.-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888887765 456666667777777788888888877665421 10001112333333445568888888888
Q ss_pred HHHH
Q 007543 477 KEME 480 (599)
Q Consensus 477 ~~m~ 480 (599)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6543
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.30 E-value=0.28 Score=31.93 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKK 167 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (599)
+..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.06 E-value=7.9 Score=39.59 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..+=..|..++.+.|+.++|.+.+++|.+.. ..-+..+...|+.++...+.+.++..++.+-.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3333456777778899999999999887532 112344777888899999999999988888754
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.91 E-value=3.4 Score=38.71 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYA--PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-P-SALTYQIILK 216 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~ll~ 216 (599)
|+.-+..| +.|++..|...|....+.... -...++..|..++...|++++|..+|..+.+.-++ | -+..+-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44433333 345566666666665554211 01234455566666666666666666655543221 1 1234445555
Q ss_pred HHHHcCCHHHHHHHHHHhHh
Q 007543 217 LFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~ 236 (599)
...+.|+.++|..+|+++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 55555566666666655554
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.84 E-value=0.46 Score=30.87 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 213 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 213 (599)
+|..+...|.+.|++++|.++|++.++..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 4666677777777777777777777765433 4444433
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.81 E-value=13 Score=38.14 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 259 AGGYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF 336 (599)
Q Consensus 259 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (599)
..+.+.-.+.-++..+. .|+-.+.-.++.. .....++.+++++..+.|- ..+ .+....+..-..+
T Consensus 181 ERnp~aRIkaA~eALei--~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEI--NPDCADAYILLAEEEASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQHHGHFW 247 (539)
T ss_pred cCCHHHHHHHHHHHHHh--hhhhhHHHhhcccccccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhhcccchh
Confidence 33444434443444332 2444444444443 4557888888888776541 111 0000000000111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-
Q 007543 337 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF- 414 (599)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 414 (599)
+.+..+...+-..+-..+..+.-+.|+.++|++.|++|.+.... .+......|+.++...+.+.++..++.+-.+...
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 12222222333344455667777889999999999988764311 2345677788899999999999998888654322
Q ss_pred CCCHHHHHHHHH
Q 007543 415 VPNVITYGTLIK 426 (599)
Q Consensus 415 ~p~~~~~~~li~ 426 (599)
+.-...|+..+-
T Consensus 328 kSAti~YTaALL 339 (539)
T PF04184_consen 328 KSATICYTAALL 339 (539)
T ss_pred chHHHHHHHHHH
Confidence 222344555443
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.76 E-value=3.2 Score=42.84 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
..-.+.++.-+-+.|..+.|+.+-..-. .-.+...++|+++.|.++.++. ++...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 4447778888888888888887754322 2234556788888888765432 367788888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 472 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (599)
....|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....| -++....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 8888888888888886543 4566677777888877777776666554 234444555566777776
Q ss_pred HHHHHH
Q 007543 473 VVWYKE 478 (599)
Q Consensus 473 ~~~~~~ 478 (599)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.71 E-value=2.8 Score=43.26 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=54.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
-.+...++|+++.|.++.++. ++...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGD 388 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-
T ss_pred HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCC
Confidence 344455566666666554332 2555666666666666666666666665421 4445555666666
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
.+.-.++.+.....+ -+|....++...|+.++..+++.+
T Consensus 389 ~~~L~kl~~~a~~~~---------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 389 REKLSKLAKIAEERG---------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHHHTT----------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc---------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665555555544321 134444445555666666555543
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.68 E-value=3.5 Score=34.68 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 100 LPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA 178 (599)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 178 (599)
.|+..++......-..+++..|.+.|+.+...-++ +........|+.+|.+.|++++|...+++..+.....--+-|-.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34445555555445567788888877777766432 22344556777788888888888888887777643333344555
Q ss_pred HHHHHHhc
Q 007543 179 LMEAYGRG 186 (599)
Q Consensus 179 li~~~~~~ 186 (599)
.+.+++.-
T Consensus 88 Y~~gL~~~ 95 (142)
T PF13512_consen 88 YMRGLSYY 95 (142)
T ss_pred HHHHHHHH
Confidence 55554443
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.33 E-value=1.5 Score=41.65 Aligned_cols=75 Identities=20% Similarity=0.149 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS-----SGPRPSALTYQIIL 215 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll 215 (599)
+..++..+..+|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 445666666667777777777776665422 566677777777777777777777666644 45566555544443
Q ss_pred H
Q 007543 216 K 216 (599)
Q Consensus 216 ~ 216 (599)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.29 E-value=3.2 Score=38.83 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=77.4
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHcCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 007543 105 VLGTLVRLKQLKKWNVVSEVLEWLRIQSW-WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA--PSVVSHTALME 181 (599)
Q Consensus 105 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~ 181 (599)
.+.....+-..+++..|.+.|....+..+ -...+..+.+|...+...|++++|..+|..+.+.-.. .-..++-.|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 35555555667889999998877776532 2344667889999999999999999999999875211 12567888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007543 182 AYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+..+.|+.++|..+|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999886
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=92.29 E-value=9.8 Score=38.74 Aligned_cols=149 Identities=14% Similarity=0.100 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCCCC-CHHhHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 118 WNVVSEVLEWLRIQSWWDF-NEMDFLMLITAYGK---------QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 187 (599)
Q Consensus 118 ~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 187 (599)
...|+.+|+........+| ....|..+..++.. .....+|.++-+...+.+.. |..+...+..++.-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 4466677777773222222 23444444333322 23455677777777777633 7777777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 267 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 267 (599)
+++.|..+|++....++. ...+|....-.+.-.|+.++|.+.+++.++. ++...-..+....++.|+.. .+++|.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 888888888888775433 3444544455556678888888888886642 22233334444455566544 3566666
Q ss_pred HHHH
Q 007543 268 LFAL 271 (599)
Q Consensus 268 ~~~~ 271 (599)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6543
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.25 E-value=7.1 Score=33.88 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=87.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQII--- 214 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--- 214 (599)
..|..-++ +.+.++.++|+.-|..+.+.|+..-.+ ..-.+.....+.|+...|...|++.-.....|-..-=..-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 456788899999999998887652221 2223344567788999999999988765554543311111
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007543 215 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQ 279 (599)
Q Consensus 215 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 279 (599)
.-.+...|.++......+-+. ..+.+.-...-..|.-+-.+.|++.+|.+.|.++......|
T Consensus 139 a~lLvD~gsy~dV~srvepLa---~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLA---GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhcc---CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 123567788888777766664 22223344455667777788999999999998887643333
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=11 Score=35.91 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 321 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDME 400 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 400 (599)
......|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 44567788888888888877664 33445566677788888888888888877654321112222222233333333333
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcC
Q 007543 401 GAEKFFRRLKQDGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI-KPNQTIFTTIMDAYGKNK 467 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g 467 (599)
+...+-.+.-. .| |...--.+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.--|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333322 23 555555666667777777777666655553211 123344455555555444
No 261
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.92 E-value=7.6 Score=41.64 Aligned_cols=180 Identities=19% Similarity=0.204 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHc
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLIN----A-YGKARREEEALAVFEEMLD-------AGVRPTHKAYNILLDAFAIS 361 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 361 (599)
...+...++...+.| +...-..+.. + +....+.+.|+.+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777665 2222222222 2 3355577788888877765 33 233445555555553
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--hcCC
Q 007543 362 G-----MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN-ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA--KVNN 433 (599)
Q Consensus 362 g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~ 433 (599)
. +.+.|..++...-+.| .|+...+-..+.-... ..+...|.++|....+.|.. ....+-+++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 2 4555666666666655 2233222221111111 23456677777766666522 2222211111111 1225
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 434 LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
.+.|..++.+..+.| .|-..--...+..+.. ++++.+.-.+..+.+.|
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 666666666666655 3322222222333333 55555555555555444
No 262
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.70 E-value=17 Score=37.20 Aligned_cols=187 Identities=13% Similarity=0.170 Sum_probs=108.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 134 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 213 (599)
Q Consensus 134 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 213 (599)
.+.+.....+++..++.+.+..-.+.+..+|..-| -+-..|..++++|..+ ..++-..+++++.+.... |++.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 35677777888888888888888888888888865 4677888888888888 567777888888775443 4433344
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCC
Q 007543 214 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETN 293 (599)
Q Consensus 214 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 293 (599)
|...|- .++...+...|.+++..- -| ..+.....+++.++.+. ...+
T Consensus 138 La~~yE-kik~sk~a~~f~Ka~yrf----I~--------------~~q~~~i~evWeKL~~~--------------i~dD 184 (711)
T COG1747 138 LADKYE-KIKKSKAAEFFGKALYRF----IP--------------RRQNAAIKEVWEKLPEL--------------IGDD 184 (711)
T ss_pred HHHHHH-HhchhhHHHHHHHHHHHh----cc--------------hhhhhhHHHHHHHHHHh--------------cccc
Confidence 444443 377777777777765321 11 11222223333333321 0112
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007543 294 YKEVSKIYDQMQR-AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 358 (599)
Q Consensus 294 ~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (599)
.+....+...++. .|...-.+.+.-+-.-|....++++|++++....+.+ ..|...-..++..+
T Consensus 185 ~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 185 KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 3333333333332 2222333444445556666667777777777666654 44555544444433
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.61 E-value=13 Score=35.73 Aligned_cols=102 Identities=17% Similarity=0.113 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 314 VSYALLINAYGKARREE---EALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
.++..++.+|...+..+ +|..+++.+.... +..+.++-.-+..+.+.++.+.+.+++.+|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35667778887777644 5566666664432 2234455455566666788888888888888752 11223444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHhhCCCCCCH
Q 007543 391 SAY---VNASDMEGAEKFFRRLKQDGFVPNV 418 (599)
Q Consensus 391 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 418 (599)
..+ ... ....|...+..+....+.|..
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 433 332 234455555555433334333
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.50 E-value=8.9 Score=33.43 Aligned_cols=132 Identities=9% Similarity=0.137 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 369 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 369 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
+.++.+.+.+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4555566677788888888888888888876554443 44455566655554443332 2233344444444422
Q ss_pred CCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 449 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
=...+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+++-+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0124566778888899999998888775332 1122345677777777665555444443
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.39 E-value=2.4 Score=40.31 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR-----DRCSPDICSYT 387 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 387 (599)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456778888888888888888888888776 66778888888888888888888888887765 36666666555
Q ss_pred HHHHH
Q 007543 388 TMLSA 392 (599)
Q Consensus 388 ~li~~ 392 (599)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.33 E-value=12 Score=34.78 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK---AKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+.+-|.+.|.+-.|..-+++|++. .+-+.. .+..+..+|.+.|-.++|...-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3556788999999999999999885 333333 34556678999999999988877663
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=15 Score=35.53 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=88.0
Q ss_pred cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCH
Q 007543 289 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH----KAYNILLDAFAISGMV 364 (599)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~ 364 (599)
-+.|+..+|-..++++.+. .+.|...+...-.+|.-.|+.+.-...+++....- .+|. ..-..+..++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3455666666666666654 34566667777777777777777777777765431 2232 2223334455577777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 365 DQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD---GFVPNVITYGTLIKGYAKVNNLEKMMEIY 441 (599)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 441 (599)
++|.+.-++..+-+ +.|...-.+....+...|+..++.++..+-... +--.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777666543 345566666667777777777777776653321 00000111222223344456777788777
Q ss_pred HHH
Q 007543 442 DKM 444 (599)
Q Consensus 442 ~~m 444 (599)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.20 E-value=9 Score=37.35 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=9.9
Q ss_pred HcCCHHHHHHHHHHHHH
Q 007543 258 KAGGYEKARKLFALMAE 274 (599)
Q Consensus 258 ~~g~~~~A~~~~~~m~~ 274 (599)
...+.++|+..+.+-..
T Consensus 18 ~s~~~~~al~~w~~~L~ 34 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLE 34 (518)
T ss_pred cCchHHHHHHHHHHHHH
Confidence 45566666666655443
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.02 E-value=4.9 Score=35.67 Aligned_cols=97 Identities=23% Similarity=0.221 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
..+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|+...-.+++..+.....+....--.+.......-++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577899999999999999999999988654433 44677889999999999999988887754322222222221122
Q ss_pred -----HHHHcCCHHHHHHHHHHhH
Q 007543 217 -----LFVEANKFKEAEEVFMTLL 235 (599)
Q Consensus 217 -----~~~~~g~~~~A~~~~~~~~ 235 (599)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2345678888888887774
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.96 E-value=3.3 Score=36.75 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHh---CCCCCCHHHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT--IFTTIMDAYGKNKDFDSAVVWYKEMES---CGFPPDQKAKNI 493 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ 493 (599)
..+..+.+.|++.|+.+.|.+.|.++.+....+... ++-.+|....-.|++..+...+.+... .|-+++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 457788888899999999999999988765555533 667788888888899888888877754 222222222111
Q ss_pred HHH--HHhhcCcHHHHHHHHHhc
Q 007543 494 LLS--LAKTADERNEANELLGNF 514 (599)
Q Consensus 494 ll~--~~~~~g~~~~A~~~~~~~ 514 (599)
... .+...+++.+|-+.+-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 244578888888777664
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.49 E-value=15 Score=35.87 Aligned_cols=130 Identities=15% Similarity=-0.028 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHH--
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGV-----RPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSPDIC-- 384 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~-- 384 (599)
..++..+....+.++++++.|+...+.-- .....++..|-+.|.+..++++|.-+..+..+. ++..-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34456666677778888888887754311 122346788888888888888888766654331 2221111
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 385 ---SYTTMLSAYVNASDMEGAEKFFRRLKQ----DGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 385 ---~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
....|.-++...|....|.+.-++..+ .|-.+ .......+.+.|...|+.|.|+.-|++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222333467777887777777776543 34222 22334567778888888888887777754
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.49 E-value=5.7 Score=43.03 Aligned_cols=175 Identities=13% Similarity=0.198 Sum_probs=112.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 399 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 399 (599)
.+-+.+.|++++|...|-+-+.. +.|. .+|.-|....++.+-..+++.+.+.|.. +...-+.|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34456789999999888876643 1332 3556667777788888888999888754 455557888999999999
Q ss_pred HHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 400 EGAEKFFRRLKQDGFV-PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
++-.++.+.-. .|.. .| ....+..+.+.+-.++|..+-.+... +......+ +-..|++++|++++..
T Consensus 448 ~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 98888877654 3322 13 33456667777777777776655532 22333333 4567889999999987
Q ss_pred HHhCCCCCCH--HHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 479 MESCGFPPDQ--KAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 479 m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
+ +|+. .+.......+..+..-+-...+++...+.+
T Consensus 516 l-----p~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~ 552 (933)
T KOG2114|consen 516 L-----PISELLRTLNKYGKILLEHDPEETMKILIELITELN 552 (933)
T ss_pred C-----CHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcC
Confidence 6 4443 344445555555554444444444444333
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.18 E-value=16 Score=34.09 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=100.5
Q ss_pred CCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007543 99 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHT 177 (599)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 177 (599)
..|.+.++......-.-|+|+.|...|+.+..+.++ +....+-..++-++-+.++++.|+..+++....-......-|-
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 446667776666555668999999999999877543 2334566678888889999999999999887754333333444
Q ss_pred HHHHHHHhc-------CCH---HHHHHHHHHHHhCC----CCCCHHHHHH------------HHHHHHHcCCHHHHHHHH
Q 007543 178 ALMEAYGRG-------GRY---KNAEAIFRRMQSSG----PRPSALTYQI------------ILKLFVEANKFKEAEEVF 231 (599)
Q Consensus 178 ~li~~~~~~-------g~~---~~A~~l~~~m~~~g----~~p~~~t~~~------------ll~~~~~~g~~~~A~~~~ 231 (599)
.-|.+++.- .+. .+|..-|++++..= ..||...-.. +.+.|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 445544431 223 34444444444431 2233322211 223466667777777777
Q ss_pred HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 232 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+.+++.- ...+.....+-.+..+|...|-.++|.+.-.-+.
T Consensus 191 ~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 191 EEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7776531 1111122334445566666666666665544443
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.15 E-value=0.7 Score=28.44 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRR 198 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~ 198 (599)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555555555555555555
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.75 E-value=42 Score=38.32 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=65.0
Q ss_pred CCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007543 345 RPTHKAYNILL----DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 420 (599)
Q Consensus 345 ~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 420 (599)
.|+...+..+. +.+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+-.++... -+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 45554444333 3334556666666666543221 23456677777777777777666532 12211
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 421 --YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 421 --~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
-..|+.-+...++.-+|-++..+.... ..-.+..|++...|++|.++.....
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 245666666777777777776665421 1223455666677888877765543
No 276
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.52 E-value=35 Score=37.13 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-------YKNAEAIFRRMQSSGPRPSAL 209 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~ 209 (599)
.+|-.+.++|.+++|.++..+.... .......+-..+..|....+ -++...-|++..+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 6777888999999999999555433 33345566777777766432 245556677766554433554
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.06 E-value=22 Score=34.21 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=11.7
Q ss_pred HhcCChHHHHHHHHHHHh
Q 007543 149 GKQGDFNKAEKVLSFMNK 166 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~ 166 (599)
.+.|+++.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356677777777776654
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.99 E-value=1 Score=27.66 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 248 MFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.89 E-value=15 Score=31.99 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=91.4
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---HHH
Q 007543 105 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA---LME 181 (599)
Q Consensus 105 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~ 181 (599)
.+.....+..-+.-++|+..|..+.+.+.-....-............|+...|...|+++-.....|-+.-=.. -.-
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 34444455666778889999999988763222222233455677889999999999999987654444331111 122
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 007543 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 236 (599)
.+..+|.+++...-.+-+-..+-..-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4567899999888888776555444455556777788899999999999999975
No 280
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.53 E-value=5.1 Score=35.85 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 190 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKAR 266 (599)
Q Consensus 190 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 266 (599)
+.|.+.|-.+...+.--++.....| ..|....+.+++..++...++....+-.+|+..+..|+..|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5677777777666544344333333 344446677777777777776544444677777888888888888777764
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.47 E-value=39 Score=36.29 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHc
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAY-----GRGGRYKNAEAIFRRMQS-------SGPRPSALTYQIILKLFVEA 221 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~ 221 (599)
...|.+.++...+.| ++..-..+...| ....+++.|+.+|+.+.+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888775 455444444433 345678888888888766 33 222344444455443
Q ss_pred C-----CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCC
Q 007543 222 N-----KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK-AGGYEKARKLFALMAERGV 277 (599)
Q Consensus 222 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~ 277 (599)
. +.+.|..++....+.+ .|+....-..+..... ..+...|.++|...-..|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG----NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC----CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 2 4455666666665432 3333322222221111 1344556666665555543
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.44 E-value=1.1 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
No 283
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=88.05 E-value=0.088 Score=42.88 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.5
Q ss_pred cchhhhhhhcCCCCcceeeecCCc
Q 007543 561 EDDAEETIACSGKEDELIFFNGDH 584 (599)
Q Consensus 561 ~~~~~~~~~~~~~e~~a~a~~~~~ 584 (599)
++++++..++.||||+||||.-..
T Consensus 52 d~~~~~~~~~~HSEKlAiafgli~ 75 (116)
T PF14432_consen 52 DEEEKEESLCYHSEKLAIAFGLIN 75 (116)
T ss_pred ccccchhhhhccHHHHHHHhcccc
Confidence 455668899999999999997544
No 284
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.95 E-value=25 Score=33.42 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
++.....|..+|.+.+|.++.+...... +.+...+-.++..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556666677777776666665542 3355556666666777776666666666553
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.82 E-value=39 Score=35.51 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHH
Q 007543 347 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF--VPNVITYGTL 424 (599)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 424 (599)
+..+|..-+..-.+.|+.+.+.-+|+...-. +..=...|--.+.-....|+.+-|..++.+..+--+ .|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456777777777777777777777765431 111223344444444444777777766666544322 2333333322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHhHHH
Q 007543 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~ 473 (599)
+ .-..|+++.|..+++.+.+. + |+.. .-..-+....+.|+.+.+.
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence 2 22356777777777777654 2 4433 3333444556667766666
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.00 E-value=1.5 Score=26.13 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.|..+...+...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.72 E-value=1.1 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 243 KPDQKMFHMMIYMYKKAGGYEKAR 266 (599)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~ 266 (599)
|-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 556777777777777777777775
No 288
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.69 E-value=36 Score=33.86 Aligned_cols=282 Identities=15% Similarity=0.101 Sum_probs=160.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALME--AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 228 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 228 (599)
.|+-..|+++-.+-.+. +..|....-.|+. +-.-.|+++.|.+-|+.|... ++.-..-+..|.-.--+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 45666666655543321 1123333333332 233457777777777777542 1111111122222234567777777
Q ss_pred HHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHhcc------cCCHHHHHH
Q 007543 229 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG-VQQSTVT--YNSLMSF------ETNYKEVSK 299 (599)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~--~~~ll~~------~~~~~~a~~ 299 (599)
++-+.....- +.-...+...+...|..|+++.|+++++.-.... +.++..- -..|+.+ ..+...|..
T Consensus 175 ~yAe~Aa~~A----p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 175 HYAERAAEKA----PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHhhc----cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 7666665321 2234566677777777777777777777665432 2333321 1222221 234445554
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 007543 300 IYDQMQRAGLQPDVVS-YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD- 377 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 377 (599)
.-.+..+ +.||.+- -..-..++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+. +..-++...+.
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCCc--HHHHHHHHHHHH
Confidence 4444443 3455433 234457789999999999999999887 455444432 234455653 22222222211
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCC
Q 007543 378 RCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK-VNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 378 ~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~ 448 (599)
..+ .+..+...+..+-...|++..|..--+..... .|....|..|.+.-.- .|+-.++...+.+..+..
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 112 35567777788888899998888776665543 6888888888777654 499999999999888653
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.32 E-value=1.8 Score=25.89 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555544
No 290
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.26 E-value=32 Score=32.86 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 345 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFR 407 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (599)
.++..+...++..+++.+++.+-.++++.-... +...|...|..+|......|+..-..++..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455556666666666666666666666654443 344456666666666666666655555444
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.03 E-value=1 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~ 193 (599)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.55 E-value=23 Score=30.57 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=24.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 324 GKARREEEALAVFEEMLDAGVRPTHKAYN-ILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
.+.++.+++..++..+.-. .|...... .-...+...|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455566666666655443 33322211 1122344556666666666665443
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=30 Score=32.01 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 007543 250 HMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 250 ~~li~~~~~~g~~~~A~~~~~~m 272 (599)
+--..+|..+|..+.|-..+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHH
Confidence 33344555666655555544443
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.48 E-value=5.7 Score=30.66 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 436 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
++.+-++.+...++.|++.+..+.+.+|.+.+++..|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555666676666777777777777777777666554
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.34 E-value=49 Score=34.18 Aligned_cols=196 Identities=13% Similarity=0.180 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
..|.....+++..+....++.-...+..+|...| -+...|..++..|..+ ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3466667778888888888888888888888764 4667788888888887 456677788877776432 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVP--N---VITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~ 463 (599)
..-|-+ ++.+.+..+|.++...=++- + ...|..|...- ..+.+....+..++.+ .|..--...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 78888888888776542210 1 12344443321 2466667777766663 34334455666666778
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCcHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT-ADERNEANELLGN 513 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~ 513 (599)
....++++|++++....+.+ ..|...-..++..+.. -.......+++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~ 265 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHSQLEEYLKI 265 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccchhHHHHHHh
Confidence 88888888888888887754 4455555555554332 2233344444433
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.89 E-value=80 Score=36.27 Aligned_cols=146 Identities=21% Similarity=0.271 Sum_probs=61.8
Q ss_pred hHHHHHHHhhhcCCCC-ChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCC-----CCCCHHhHHHHHHHHHhc-CChHHH
Q 007543 85 SAVAVLRSERTRGQPL-PKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSW-----WDFNEMDFLMLITAYGKQ-GDFNKA 157 (599)
Q Consensus 85 ~a~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~-g~~~~A 157 (599)
+|.-+|...+.....+ |...++..+..+...+++.. .|+++++... +..++..|..-+.++.+. ++.+--
T Consensus 659 ka~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~---AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l 735 (1265)
T KOG1920|consen 659 KAAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKE---AFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHL 735 (1265)
T ss_pred hhhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHH---HHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHH
Confidence 3555665333332322 44455555555444445544 5566665431 223344444444444433 444444
Q ss_pred HHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHH
Q 007543 158 EKVLSFMNKKGYAPSV--VSHTALMEAYGRGGR----YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN--KFKEAEE 229 (599)
Q Consensus 158 ~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~A~~ 229 (599)
..++-.+....+.-+. .+|.+-...|..... .....+..+..... ..|+ .-...+|.+|.+.+ .++.|++
T Consensus 736 ~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~ 813 (1265)
T KOG1920|consen 736 ELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQ 813 (1265)
T ss_pred HHHHhhcccchhhhhhccccccccceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHH
Confidence 4444444432111000 011111112222222 22222322222222 2344 33456667777766 5666666
Q ss_pred HHHHhH
Q 007543 230 VFMTLL 235 (599)
Q Consensus 230 ~~~~~~ 235 (599)
......
T Consensus 814 kI~~l~ 819 (1265)
T KOG1920|consen 814 KIKELQ 819 (1265)
T ss_pred HHHHHH
Confidence 655554
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.43 E-value=46 Score=33.12 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRP---THKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
...+|..+...+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44678888889999999999999999887643111 333444445666677888999988887776
No 298
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.43 E-value=30 Score=31.06 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
..+......+...+.+..+...+...... .........+......+...+.+..+.+.+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44444555555555555555555554320 01123333444444444455555555555544443
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.42 E-value=11 Score=39.27 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=75.5
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
-.|+++.|..++..+. ....+.+++.+-+.|..++|+++- +|...-=-+.-..++++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~----------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP----------KEIRTKVAHFLESQGMKEQALELS---------TDPDQRFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc----------hhhhhhHHhHhhhccchHhhhhcC---------CChhhhhhhhhhcCcHHHHHH
Confidence 3456666665543331 234566778888888888887642 222211112222345555544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 379 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 379 (599)
+..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 44333 1445566666666666666666666655443 23344455555555444444343333331
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 380 SPDICSYTTMLSAYVNASDMEGAEKFFRR 408 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (599)
.|...-+|...|+++++.+++.+
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHh
Confidence 12223344555666666655543
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.32 E-value=9.6 Score=36.42 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
++++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555444
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.30 E-value=14 Score=37.38 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=74.3
Q ss_pred cCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 396 ASDMEGAEK-FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 396 ~g~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
.|+...|-+ ++.-+....-.|+.....+ ..+...|.++.+.+.+...... +.....+..++++...+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 455554443 3333333322344443333 3345667777777776665432 23345566777777777777887777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCccccccc
Q 007543 475 WYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSIS 529 (599)
Q Consensus 475 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 529 (599)
...-|....+. ++.....-.......|-++++...|+++...+++.+..|++.+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 77777654432 3333333333445566777787777777766666666666543
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.29 E-value=12 Score=35.81 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC--CHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 242 LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG---VQQ--STVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSY 316 (599)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~--~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 316 (599)
.+....+...++..-....+++.+...+-++...- ..| +.++|-.++.. -+..+++.++..-+..|+-||.+++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 34445555566666666777888887777765431 112 23333333332 3455777777777888888999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
+.+|+.+.+.+++.+|.++.-.|....
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999888888877776543
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.17 E-value=34 Score=31.46 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=13.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHhC
Q 007543 461 DAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
..-...+++.+|+.+|++....
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777776553
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.99 E-value=3.1 Score=24.69 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
|..+...|...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444455555555555555554443
No 305
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.94 E-value=83 Score=34.95 Aligned_cols=194 Identities=12% Similarity=0.043 Sum_probs=106.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH-HHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 007543 323 YGKARREEEALAVFEEMLDAGVRPTHK-------AYNILLDA-FAISGMVDQARTVFKCMRRD----RCSPDICSYTTML 390 (599)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~li~~-~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li 390 (599)
.....++.+|..+..++...-..|+.. .++++-.. ....|++++|.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 356678889998888875542232221 34444332 23467888888888776553 2234556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-----HHHHhcCC--HHHHHHHHHHHHHCC--CC----cCHHHHH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI-----KGYAKVNN--LEKMMEIYDKMRVNG--IK----PNQTIFT 457 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~g~--~~~A~~~~~~m~~~~--~~----p~~~~~~ 457 (599)
.+..-.|++++|..+..+..+..-.-+...|.... ..+...|. ..+.+..|....... -. +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 78888999999999888766532223333333222 22445662 333444444433210 01 1123555
Q ss_pred HHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCcHHHHHHHHHhccC
Q 007543 458 TIMDAYGKN-KDFDSAVVWYKEMESCGFPPDQKA--KNILLSLAKTADERNEANELLGNFNH 516 (599)
Q Consensus 458 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~ 516 (599)
.+..++.+. +...+|...+.-.......|-... +..|.......|+.++|...+..+..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566666551 222223333333322211121111 22566778889999999998888663
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.93 E-value=77 Score=34.58 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 116 KKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI 195 (599)
Q Consensus 116 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 195 (599)
+.+++|+++.+.............+....|+.|.-.|++++|-...-.|... +..-|-.-+..+...++......+
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhcc
Confidence 4556666554433322110012345668899999999999999999999865 777888888888777776543332
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------hHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 196 FRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMT--------------LLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 196 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~--------------~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
+-......+...|..++..+.. .+...-.++... ....-+. ...+...-..|+..|...++
T Consensus 446 ---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-~Se~~~L~e~La~LYl~d~~ 520 (846)
T KOG2066|consen 446 ---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-NSESTALLEVLAHLYLYDNK 520 (846)
T ss_pred ---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-hccchhHHHHHHHHHHHccC
Confidence 3322233456677777776665 222111111110 0000000 01122334458889999999
Q ss_pred HHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAE 274 (599)
Q Consensus 262 ~~~A~~~~~~m~~ 274 (599)
+..|++++-..++
T Consensus 521 Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 521 YEKALPIYLKLQD 533 (846)
T ss_pred hHHHHHHHHhccC
Confidence 9999998877654
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.74 E-value=82 Score=34.72 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=88.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
.+.+.+.|++++|...+-+-... +.|+ .+|.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34455678888888777655432 1222 3556666666777777788888887765 444556778888888888
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHH
Q 007543 225 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQM 304 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m 304 (599)
+.-.+..+..- .|.. ..-....+..+.+.+-.++|..+-.+... .......++...+++.+|.+.+..+
T Consensus 448 ~kL~efI~~~~----~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 448 EKLTEFISKCD----KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcCC----Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 77666655442 1111 11234456666677777777665544332 4556666777777777777776654
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.68 E-value=12 Score=33.35 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=69.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPN-----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAY 463 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 463 (599)
..-+.+.|++++|..-|.+.+..- ++. .+.|..-..++.+.+.++.|++-..+.++.+ |+ ......-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 456778999999999999988752 222 3346666677888999999999888888653 43 22333445578
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
.+..++++|+.=|+++.+ ..|...
T Consensus 179 ek~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHH--hCcchH
Confidence 888999999999999988 456543
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.56 E-value=3.3 Score=25.97 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4555555555555555555555554
No 310
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.44 E-value=21 Score=27.83 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=64.1
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
.....++|.-+-+|+...+. ..+.+-..-+..+.+.|++++|..+.+.+. .||...|-+|-.. +.|..+++.
T Consensus 17 G~HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~ 88 (115)
T TIGR02508 17 GHHCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALE 88 (115)
T ss_pred cchHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHH
Confidence 34567889999999987651 223333345567788999999999888773 5899999887654 778888888
Q ss_pred HHHHHHHhCCCCCCHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQ 212 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~ 212 (599)
.-+.+|..+| .|...+|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8788887776 34444443
No 311
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.12 E-value=48 Score=31.67 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK-GYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
-.|+.+.+...-+..++..+-...+..+++.+++.+-.++++.-... +..-|...|...|..-...|+..-...
T Consensus 185 lYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 185 LYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred HHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 33555555543222345555666777777777777777776665544 444566667777777777776643333
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.10 E-value=10 Score=34.37 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL 234 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 234 (599)
.++.+.+.+.+++|+.+.+.-++..+. |..+-..+++.+|-.|++++|..-++..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344455555555555555554444322 4444455555555555555555544443
No 313
>PRK09687 putative lyase; Provisional
Probab=81.56 E-value=52 Score=31.70 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007543 347 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVITYGTLI 425 (599)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li 425 (599)
+..+-...+.++++.|+ .++...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444444555555544 3344444444432 23333333333444332 12344444444443 23444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+..+.+ -.||...-...+.+|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 56666555 33444444444322 1 223455566666663 46666666554 234544444434433
No 314
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.27 E-value=43 Score=30.49 Aligned_cols=177 Identities=12% Similarity=0.131 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHH
Q 007543 222 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSK 299 (599)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~a~~ 299 (599)
|-+..|.--|.+.+... +.-..+||.|.-.+...|+++.|.+.|+...+....-+-...|.-+.. .|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai~----P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcC----CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 44444444444444221 233467777777778888888888888887776443333344443433 367776666
Q ss_pred HHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhC
Q 007543 300 IYDQMQRAGL-QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILL-DAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 300 ~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
-+-+.-+... .|-...|--++ -+.-++.+|..-+.+--+ ..|..-|...| ..|...=..+ .+++.+...
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHH---HHHHHHHhh
Confidence 5555544431 12122222222 223355555543332211 22333333222 2222111111 123333221
Q ss_pred CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 378 RC------SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 378 ~~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
.- ..-..||--+..-+...|+.++|..+|+-.+.
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 10 00124566666666677777777777776554
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.27 E-value=7.8 Score=30.31 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 437 MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..+-++.+....+.|++.+..+.+.+|.+.+++..|+++++-...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444555666666666666666666666666666665543
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.01 E-value=4.4 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 247 KMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888888888888887764
No 317
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=80.71 E-value=26 Score=27.73 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=54.1
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
......+|..+.+|+...+. ..+.+--..+..+.+.|++++| +..- .....||...|-+|-. .+.|..+++.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL~a--~klGL~~~~e 89 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAALCA--WKLGLASALE 89 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHHHH--HHCT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHHHH--HhhccHHHHH
Confidence 45578899999999998762 2333334556678899999999 2222 2223678888877754 4788888888
Q ss_pred HHHHHHHhCC
Q 007543 194 AIFRRMQSSG 203 (599)
Q Consensus 194 ~l~~~m~~~g 203 (599)
..+.++..+|
T Consensus 90 ~~l~rla~~g 99 (116)
T PF09477_consen 90 SRLTRLASSG 99 (116)
T ss_dssp HHHHHHCT-S
T ss_pred HHHHHHHhCC
Confidence 8888887665
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.26 E-value=29 Score=31.19 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=61.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS---GPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
...-+.|++.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+.+|...+.+.|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344789999999988876667777777777666 67889999998888754 3367899999999999999999887
Q ss_pred H
Q 007543 228 E 228 (599)
Q Consensus 228 ~ 228 (599)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 319
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.71 E-value=39 Score=29.14 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=26.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 149 GKQGDFNKAEKVLSFMNKKGYAPSVVSH-TALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
.+.++.+++..+++-+.-. .|..... ..-...+.+.|++.+|+.+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4555666666666666554 2332222 22233445566666666666665443
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.10 E-value=76 Score=31.51 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP---NVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
...+|..++..+.+.|+++.|...+..+...+... .+...-.-+..+...|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566667777777777777777777766533111 222333344555666777777777666654
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.73 E-value=4 Score=24.29 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444555555544444443
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.70 E-value=21 Score=27.67 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
.-++.+-++.+....+.|++....+-+++|-+.+++..|.++|+-.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555555555666666666666777777777777777666655
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.85 E-value=15 Score=28.73 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 401 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555566667777777777777777777777777777666
No 324
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=76.81 E-value=51 Score=28.81 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREE 330 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (599)
+.+.+.+.+++|+...+..+++.+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3444445555666666666666666666543
No 325
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.78 E-value=29 Score=31.07 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=68.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 356 DAFAISGMVDQARTVFKCMRRDRCSPDI-----CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
+-+.+.|++++|..-|...+.. +++.. +.|..-..++.+.+.++.|+.--.+.++.+. ........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHh
Confidence 5688999999999999998875 33332 3344445578899999999998888887652 233444444668889
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007543 431 VNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~ 447 (599)
...+++|++-|.++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999875
No 326
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.69 E-value=72 Score=30.50 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----hCCCCCCHHH
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKA 490 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 490 (599)
++.....|..+|.+.+|.++.++....+ +.+...|-.++..+...|+--.|.+-++++. +.|+..|...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3445566777777777777777776543 4456677777777777777666666666653 2455555544
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.18 E-value=18 Score=31.73 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007543 469 FDSAVVWYKEMESCGFPPDQKAKNILLSLAK 499 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 499 (599)
+++|...|++..+ ..|+...|+.-+..+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 4556666666665 5777777777666653
No 328
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.45 E-value=18 Score=35.12 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=26.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 007543 183 YGRGGRYKNAEAIFRRMQSSGPRP-SALTYQIILKLFVEANKFKEAEEVFMTL 234 (599)
Q Consensus 183 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 234 (599)
|.++|++++|++.|.+-... .| |.+++..-..+|.+..++..|+.--...
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 45556666666665554442 23 5555555555555555555555444433
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.84 E-value=0.91 Score=38.67 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=25.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFR 197 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 197 (599)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555544333345555555555555554444444443
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.75 E-value=36 Score=35.83 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
..+.+++.+.+.|..++|+++- +|.. .-.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3445556666666665555432 1111 11122234455555544433321 3334555555555
Q ss_pred HcCCHHHHHHHHHHh
Q 007543 220 EANKFKEAEEVFMTL 234 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~ 234 (599)
+.+++..|.+.|...
T Consensus 678 ~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 678 SAGELPLASECFLRA 692 (794)
T ss_pred hcccchhHHHHHHhh
Confidence 555555555555444
No 331
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.70 E-value=1.4 Score=37.41 Aligned_cols=85 Identities=16% Similarity=0.296 Sum_probs=63.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 424 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.... +. ...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd-----~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YD-----LDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cC-----HHHHHHHHHhcch
Confidence 5666777788888888888888766556688889999999999888888887772221 23 3457788888999
Q ss_pred HHHHHHHHHhcc
Q 007543 504 RNEANELLGNFN 515 (599)
Q Consensus 504 ~~~A~~~~~~~~ 515 (599)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 999999988864
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.13 E-value=1.4e+02 Score=32.69 Aligned_cols=168 Identities=14% Similarity=0.214 Sum_probs=98.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAP---SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
-++-+.+.+.+++|+++-+.-... .| -...+...|..+.-.|++++|-...-.|.. -+..-|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 356677788999999887765543 33 345788899999999999999999888854 366677777777777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKI 300 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~ 300 (599)
.++....-.+ +- ......+..+|..++..+.. .+ -..+++...+. +...|+.+.-. .++
T Consensus 436 ~~~l~~Ia~~---lP---t~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~W----p~~Lys~l~ii-------sa~ 494 (846)
T KOG2066|consen 436 LDQLTDIAPY---LP---TGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKEW----PGHLYSVLTII-------SAT 494 (846)
T ss_pred ccccchhhcc---CC---CCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHhC----ChhhhhhhHHH-------hhc
Confidence 7766543332 21 11112355678888887776 22 22222222222 22222222110 011
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 301 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEML 340 (599)
Q Consensus 301 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (599)
-.++.+.. + +...-..|+..|...++++.|+.++-...
T Consensus 495 ~~q~~q~S-e-~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 495 EPQIKQNS-E-STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred chHHHhhc-c-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 11111111 1 11222338888888899999988876664
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.10 E-value=11 Score=22.25 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555555555555555443
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.34 E-value=27 Score=33.94 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=53.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 356 DAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 434 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 434 (599)
+-|.+.|.+++|+..|...+.. .| |++++..-..+|.+...+..|..--...+..+ ..-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4577788888888887765543 34 77777777777777777776666555554332 11222333333333344555
Q ss_pred HHHHHHHHHHHHCCCCcC
Q 007543 435 EKMMEIYDKMRVNGIKPN 452 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~ 452 (599)
.+|.+-++..++ +.|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 555555555553 3455
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.33 E-value=98 Score=29.18 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=80.1
Q ss_pred CCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc------ccCCHHHHHHHHHHHHHc---C
Q 007543 239 KSPLKPDQKMFHMMIYMY-KKAGGYEKARKLFALMAERGVQQSTVTYNSLMS------FETNYKEVSKIYDQMQRA---G 308 (599)
Q Consensus 239 ~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~------~~~~~~~a~~~~~~m~~~---g 308 (599)
.++-.||+..-|..-+.- .+....++|+.-|.+..+........-|.++-. ..+++++....|.++... .
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 344567765544332211 133467778888877776543333333333322 145666666666655431 1
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--
Q 007543 309 L--QPDVVSYALLINAYGKARREEEALAVFEEMLDAG-VRPTH----KAYNILLDAFAISGMVDQARTVFKCMRRDRC-- 379 (599)
Q Consensus 309 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 379 (599)
+ .-+..+.|++++......+.+.-..+++.-++.- -..+. .|-+-|...|...|.+.+..++++++...--
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 1123344555555444444444444444322110 00111 1224455555555666666666665544310
Q ss_pred --CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 380 --SPD-------ICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 380 --~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
..| ...|..-|..|....+-.....+++...
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 111 2344445555555555555555665544
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.42 E-value=35 Score=31.03 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=21.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 321 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
+.+.+.+...+|+...++-++.. +.|.-.-..++..||-.|++++|..-++
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 33444444444444444443332 2233333344444444444444443333
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.32 E-value=7.1 Score=21.80 Aligned_cols=19 Identities=42% Similarity=0.492 Sum_probs=9.6
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVL 161 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~ 161 (599)
.|...+...|++++|+.++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555544
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.80 E-value=8.1 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=11.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNK 166 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~ 166 (599)
+..+|.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444555555555554443
No 339
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=66.96 E-value=1.8e+02 Score=30.89 Aligned_cols=412 Identities=11% Similarity=0.069 Sum_probs=205.9
Q ss_pred chhhHHHHHHHHhhhchHHHHHHHh-hhcCCCCC--hHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHH
Q 007543 69 GKKNWRRLMNQIEEVGSAVAVLRSE-RTRGQPLP--KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLI 145 (599)
Q Consensus 69 ~~~~~~~~~~~~~~~~~a~~~l~~~-~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 145 (599)
+...|+.+|....+.... .+++.- ..-....| ....-.....=.+++..+.+.++|+..... ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~-~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDV-DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHH-HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHH
Confidence 446788887766655544 444431 11111222 122211111113456677788888877653 355555565555
Q ss_pred HHHH-hcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 007543 146 TAYG-KQGDFNKAEKVLSFMNKK---GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV-- 219 (599)
Q Consensus 146 ~~~~-~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-- 219 (599)
..++ ..|+.+..++.|+..... .+. +...|...|.--..++++.....+|++.++.- ..-|+....-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 4444 567888888888877653 122 56678888888888889999999999987631 122332222221
Q ss_pred -Hc------CCHHHHHHHHHHhHhcc-CCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 007543 220 -EA------NKFKEAEEVFMTLLDEE-KSPLKPDQKMFHMMIYMYK-KAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 290 (599)
Q Consensus 220 -~~------g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 290 (599)
+. ...+++.++-.....+. .....+....+..-+..-. ..+..+++.....+....+ ..+|+ .
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~----~~~~~----~ 267 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIH----EKVYQ----K 267 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHH----HHHHH----h
Confidence 11 12333333222221100 0000011111111111110 1111222222111111000 00000 0
Q ss_pred cCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007543 291 ETNYKEVSKIYDQMQRA-------GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 363 (599)
Q Consensus 291 ~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (599)
.....+....++.-.+. -.+++..+|..-+.--.+.|+.+.+.-+|++..-- +..-...|-..+.-....|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCc
Confidence 00011111112222111 01234567888888888899999999888887532 12223344444454555588
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHH---H
Q 007543 364 VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT-YGTLIKGYAKVNNLEKMM---E 439 (599)
Q Consensus 364 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~---~ 439 (599)
.+-|..++....+--++..+.+--.-..-.-..|++..|..+++.+.+.- |+..- -..-+....+.|+.+.+. +
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 88888877766554333232222222223345679999999999988653 44332 222344556778888877 4
Q ss_pred HHHHHHHCCCCcCHHHHHHHH----H-HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 007543 440 IYDKMRVNGIKPNQTIFTTIM----D-AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 502 (599)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li----~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 502 (599)
++....+.. -+..+...+. + .+.-.++.+.|..++.++.+. .+++...|..++..+..++
T Consensus 425 l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 444433221 1222222222 1 123467888999999999873 3555566777777666554
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.69 E-value=37 Score=27.85 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 437 MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..+-++.+...++.|++.+...-+++|.+.+++..|.++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555666777777777777777777777777777777654
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.09 E-value=10 Score=22.10 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 178 ALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 178 ~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555555666666666665554
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.20 E-value=96 Score=29.52 Aligned_cols=88 Identities=11% Similarity=0.166 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK 258 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (599)
-|++++..+++.+++...-+--+.--+.-......-|-.|.+.+....+.++-..-+....+. +..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq---~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQ---SLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccC---CchhhHHHHHHHHH
Confidence 355666666666665543333221111122334444445666666666666655555422211 12225554444433
Q ss_pred -----cCCHHHHHHHH
Q 007543 259 -----AGGYEKARKLF 269 (599)
Q Consensus 259 -----~g~~~~A~~~~ 269 (599)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 46666666654
No 343
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=65.04 E-value=89 Score=28.73 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=56.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007543 134 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP---SVVSHT--ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 208 (599)
Q Consensus 134 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 208 (599)
......+++.|+--|.-...+.+|-+.|.. +.|+.| |..+++ .-|+.....|+.++|++....+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 455667777776666666666667776644 334444 333333 4567778889999998888876433233343
Q ss_pred HHHHHHHH----HHHHcCCHHHHHHHHHHh
Q 007543 209 LTYQIILK----LFVEANKFKEAEEVFMTL 234 (599)
Q Consensus 209 ~t~~~ll~----~~~~~g~~~~A~~~~~~~ 234 (599)
..+-.+.. =..+.|..++|++..+.-
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222221 134555566666655443
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.68 E-value=20 Score=26.63 Aligned_cols=46 Identities=7% Similarity=0.018 Sum_probs=20.8
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCcHHHHHHH
Q 007543 465 KNKDFDSAVVWYKEMESCGFPPDQ--KAKNILLSLAKTADERNEANEL 510 (599)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~ 510 (599)
...+.++|+..|+..++.-..+.. .++..++.+++.+|+++++..+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555442211111 2344444555555555555444
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.79 E-value=15 Score=23.85 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=14.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 252 MIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666665543
No 346
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.20 E-value=24 Score=26.25 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=29.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc-C-HHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKP-N-QTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p-~-~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
...+.++|+..|....+.-..| + -.++..++.+|+..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777766542222 2 126667777777777777766554
No 347
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.10 E-value=8.3 Score=31.88 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 463 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
+...|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 33445556678888888888877776 66666544
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.34 E-value=18 Score=23.50 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=11.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNK 166 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~ 166 (599)
|..+|...|+.+.|+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44445555555555555554443
No 349
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.16 E-value=2.6e+02 Score=30.77 Aligned_cols=269 Identities=9% Similarity=0.013 Sum_probs=133.8
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 123 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
++..++.+...++.....-..-+..+.+.+++....+++.. .+.+...-.....+....|+.++|.+....+-..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 44455555544444444444455556667777776663311 1335555566777777888877777777766555
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHH--HHHHHhHhccCCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHH
Q 007543 203 GPRPSALTYQIILKLFVEANKFKEAE--EVFMTLLDEEKSPLKPDQKMFHMMIYMYKK------------AGGYEKARKL 268 (599)
Q Consensus 203 g~~p~~~t~~~ll~~~~~~g~~~~A~--~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~g~~~~A~~~ 268 (599)
|.. .+.....+++.+.+.|.+.... +=+..++. ..+...-..++..+.. ..+...+...
T Consensus 159 g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~------~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~ 231 (644)
T PRK11619 159 GKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMK------AGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETF 231 (644)
T ss_pred CCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHH
Confidence 432 4455667777776665443322 11222221 1111111222221100 0111111111
Q ss_pred HHHHHHcCCCCCHHHHHH---Hh-c-ccCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 269 FALMAERGVQQSTVTYNS---LM-S-FETNYKEVSKIYDQMQRAG-LQPDV--VSYALLINAYGKARREEEALAVFEEML 340 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~---ll-~-~~~~~~~a~~~~~~m~~~g-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (599)
+.. +.++...-.. .+ . ...+.+.|..++....... ..+.. .++..+.......+...+|...+....
T Consensus 232 ~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 232 ART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred hhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 111 1122211110 11 1 2345677777777664432 22222 223334333333332455666666544
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 341 DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
... .+......-+..-...++++.+...+..|.... .-...-..-+..++...|+.++|..+|+.+..
T Consensus 307 ~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 307 MRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 332 233444444455557888888888888875532 23444555666777778899999888888743
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.71 E-value=18 Score=20.05 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
|..+...+...|++++|...++...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444455555555555544443
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.64 E-value=30 Score=23.50 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=18.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 460 MDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 494 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 494 (599)
.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 3345666666666666666666 55655444433
No 352
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.84 E-value=76 Score=24.20 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
+.+++..+.+.+. ++..+...+-..-...|+.+.|+++++.+. +| ...|...++++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~i--lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL--LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555555542 333333333333334566666666666666 42 22445555665555554433
No 353
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.01 E-value=1.1e+02 Score=25.94 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 385 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
+|.+++.+.++..- --.+..+|+-|++.+.+++..-|..++.++.
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444444433333 2233444444444444444444444444433
No 354
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.62 E-value=68 Score=33.75 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
.|+...|...+.......+.-..+....|.+.+.+.|..-.|..++.+.+... ....-++..+.++|....+++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~----~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN----SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc----ccCchHHHhcchhHHHHhhhHHH
Confidence 45666666655554443333233344445555555555555666655554321 22333455556666666666666
Q ss_pred HHHHHHHHHc
Q 007543 266 RKLFALMAER 275 (599)
Q Consensus 266 ~~~~~~m~~~ 275 (599)
++.|++..+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 6666665544
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.08 E-value=1.4e+02 Score=28.51 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN---- 395 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 395 (599)
|.+++..+++.+++...-+--+.--+.-.......|-.|.+.|....+.++-..-....-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666665554433322111112233344444566666666666665555543222233345555544433
Q ss_pred -cCCHHHHHHHH
Q 007543 396 -ASDMEGAEKFF 406 (599)
Q Consensus 396 -~g~~~~A~~~~ 406 (599)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666655
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.66 E-value=2.9e+02 Score=30.20 Aligned_cols=159 Identities=11% Similarity=0.107 Sum_probs=89.1
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHH-----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHH-HHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEM-----DFLMLITAYGKQGDFNKAEKVLSFMNKKGYA----PSVVSHTAL-MEA 182 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~l-i~~ 182 (599)
....+.+.|...++........ ++-. ....++..|.+.+... |.+.+++..+.--. +-...+..+ +..
T Consensus 71 ~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l 148 (608)
T PF10345_consen 71 EETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQL 148 (608)
T ss_pred HHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3456788888888766544321 2211 1225677777777666 88888876653111 112222233 233
Q ss_pred HHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhHhccCCC------CCCCHHHHHH
Q 007543 183 YGRGGRYKNAEAIFRRMQSSG---PRPSALTYQIILKLFV--EANKFKEAEEVFMTLLDEEKSP------LKPDQKMFHM 251 (599)
Q Consensus 183 ~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~ 251 (599)
+...+++..|++.++.+...- ..|-..++..++.+.. ..+..+++.+....+......- -.|-..+|..
T Consensus 149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~l 228 (608)
T PF10345_consen 149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFL 228 (608)
T ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHH
Confidence 333478888888888776532 2333444455555544 3455677778877776432211 1234566666
Q ss_pred HHHHHH--HcCCHHHHHHHHHHHH
Q 007543 252 MIYMYK--KAGGYEKARKLFALMA 273 (599)
Q Consensus 252 li~~~~--~~g~~~~A~~~~~~m~ 273 (599)
+++.++ ..|+++.+...++++.
T Consensus 229 ll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 229 LLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666444 5677667776666654
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.54 E-value=93 Score=24.49 Aligned_cols=50 Identities=6% Similarity=0.110 Sum_probs=23.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
+...|++++|..+.+.+ ..||...|-+|.. .+.|-.+.+...+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34455555555554443 2455555444432 24444444444444444443
No 358
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.15 E-value=1.5e+02 Score=26.69 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=22.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
....|.+|+|+..++.....+. .......-.+.+...|+-++|..-|++..+
T Consensus 136 q~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 136 QLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence 3344444444444444432211 112222333444455555555555555544
No 359
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.65 E-value=1.4e+02 Score=32.62 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhc---C
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAG-LQPDVVSYALLINAYGKA---R 327 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~---g 327 (599)
....+.-.|+++.|.+.+.. ..+...+.+.+...+..+|-+.-....-..+.... -.|...-+..||..|.+. .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34556678999999998877 22334467777777766554332222223333221 012225678888888763 4
Q ss_pred CHHHHHHHHHHHHHCC
Q 007543 328 REEEALAVFEEMLDAG 343 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g 343 (599)
++.+|.++|--+....
T Consensus 342 d~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 342 DPREALQYLYLICLFK 357 (613)
T ss_dssp -HHHHHHHHHGGGGS-
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7888988887776543
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.07 E-value=1.2e+02 Score=27.80 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCH-------hHHHHHHHHHHhCCCCC----CH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 455 IFTTIMDAYGKNKDF-------DSAVVWYKEMESCGFPP----DQ-KAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 455 ~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p----~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
.+--+.+.|...|+- ..|.+.|.+..+..-.| +. .....+.....+.|+.++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 444555556655553 33555555544322111 12 223344456667777777777777765433
No 361
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.97 E-value=5.3e+02 Score=32.73 Aligned_cols=312 Identities=12% Similarity=0.079 Sum_probs=161.1
Q ss_pred cccHHHHHHHHHHHHH-cCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 115 LKKWNVVSEVLEWLRI-QSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
.+.|.+|...+|.-.. ..........|..|...|+.-+++|...-+...-.. .|+ ...-|......|+++.|.
T Consensus 1396 c~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~~g~~~da~ 1469 (2382)
T KOG0890|consen 1396 CKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEASGNWADAA 1469 (2382)
T ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHhhccHHHHH
Confidence 3456667666665211 111123345566777799999999998888764221 123 223455566789999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM-IYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 272 (599)
..|+.+.+.++. ...+++-+++.....|.++...-..+.... ...+....++.+ +.+--+.++++.......
T Consensus 1470 ~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~----~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1470 ACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLII----NRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhh----ccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 999999886532 466788888877778888877765555532 223444444443 334467777777766654
Q ss_pred HHcCCCCCHHHHHHH------hcccC-CHHHHHHHHHHHHH--------cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 273 AERGVQQSTVTYNSL------MSFET-NYKEVSKIYDQMQR--------AGLQ-PDVVSYALLINAYGKARREEEALAVF 336 (599)
Q Consensus 273 ~~~g~~~~~~~~~~l------l~~~~-~~~~a~~~~~~m~~--------~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (599)
.+ +..+|... +.... +.-...+..+.+++ .+.. .-...|..++....-..--.....++
T Consensus 1543 -~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1543 -DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELK 1617 (2382)
T ss_pred -cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 22233322 22111 11111112222211 1111 11123333333322111111111111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 337 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKC-MRRD----RC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
..-.......+..-|..-+..-....+..+-+--+++ +... +. .--..+|-.......+.|+++.|...+-...
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 0000000011111222222221111222222222221 1111 11 1234678888888889999999998887777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 411 QDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 411 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
+.+ .| ..+.-...-+...|+...|+.++++..+.
T Consensus 1698 e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1698 ESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 765 33 34556677788899999999999988854
No 362
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.68 E-value=3.2e+02 Score=30.09 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 457 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
..-+....+.++++.+...+..|.... .-...-..=+..++...|+.++|..+++..
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333334445555555555555553311 111222223344444456666666555554
No 363
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.39 E-value=1.3e+02 Score=25.64 Aligned_cols=50 Identities=22% Similarity=0.178 Sum_probs=22.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
.++.+++..+++.|.-. .|+.. .-..-.-.+...|++++|+.+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555443 22221 1111222334455555555555555443
No 364
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.12 E-value=2.9e+02 Score=29.39 Aligned_cols=161 Identities=12% Similarity=0.122 Sum_probs=101.9
Q ss_pred hcccHHHHHHHHHHHHHcCC----------CCCCHHhHHHHHHHHHhcCChHHHHHHHH-------HHHhCCCCC-----
Q 007543 114 QLKKWNVVSEVLEWLRIQSW----------WDFNEMDFLMLITAYGKQGDFNKAEKVLS-------FMNKKGYAP----- 171 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~-------~m~~~g~~p----- 171 (599)
....+.++...|...+.... -+.-..+...+.+++-..|+.+-|..+.+ ....-.+.|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 34556677777766554321 01122334456677778888766655544 443322222
Q ss_pred --------CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHhHhccC
Q 007543 172 --------SVVSHTA---LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV-EANKFKEAEEVFMTLLDEEK 239 (599)
Q Consensus 172 --------~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~ 239 (599)
|..-|-+ -|+.+.+.|.+..|+++.+-+.+..+.-|+.....+|+.|+ +..++.--+++++.....++
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2223333 35567789999999999888888766667888888888775 56788888888888865555
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 007543 240 SPLKPDQKMFHMMIYMYKKAGG---YEKARKLFALMAE 274 (599)
Q Consensus 240 ~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~ 274 (599)
...-||..--.+|+..|..... -+.|+..+.+...
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 5566776655667777776655 3455555555544
No 365
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.03 E-value=1.3e+02 Score=25.60 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHK---AYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
.++++++..++..|.-. .|+.. ++.. -.+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 55566666666655433 23222 2222 2244556666666666666554
No 366
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.66 E-value=1.5e+02 Score=26.18 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSPLKPDQKMFHMM---IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKI 300 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~ 300 (599)
++.|.+.++.....+ +.|...++.- +.-+++.....++.+++++... -
T Consensus 7 FE~ark~aea~y~~n----P~DadnL~~WG~ALLELAqfk~g~es~~miedAis-------------------------K 57 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAIS-------------------------K 57 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH-------------------------H
T ss_pred HHHHHHHHHHHHHhC----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH-------------------------H
Confidence 344555555544332 4454444333 3334444555566666555443 3
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 301 YDQMQRAGLQPDV-VSYALLINAYGKAR----R-------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 368 (599)
Q Consensus 301 ~~~m~~~g~~~~~-~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 368 (599)
|++.+.. .|+- .++..+..+|...+ + +++|...|++..+. .|+..+|+.-+... .+|-
T Consensus 58 ~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap 127 (186)
T PF06552_consen 58 FEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAP 127 (186)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHH
T ss_pred HHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhH
Confidence 4555443 3443 45555665555433 2 34455555555443 67777777666654 2355
Q ss_pred HHHHHHHhCC
Q 007543 369 TVFKCMRRDR 378 (599)
Q Consensus 369 ~~~~~m~~~~ 378 (599)
++..++.+.+
T Consensus 128 ~lh~e~~~~~ 137 (186)
T PF06552_consen 128 ELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.59 E-value=69 Score=32.87 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 007543 300 IYDQMQRAGLQPDVV--SYALLINAYGKARREEEALAVF 336 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 336 (599)
+.+.+.+.|..|+.. ...+.+...+..|+.+.+..++
T Consensus 50 ~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 50 AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 444555555544432 1122334445666665544443
No 368
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.48 E-value=3.3e+02 Score=29.94 Aligned_cols=129 Identities=13% Similarity=0.183 Sum_probs=76.1
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHcC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-------
Q 007543 105 VLGTLVRLKQLKKWNVVSEVLEWLRIQS--WWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVS------- 175 (599)
Q Consensus 105 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~------- 175 (599)
++.-+.+.+..-..++.-..+..++..- .-.+.+.+...++-.|....+++...++.+.+... ||..-
T Consensus 166 flsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv 242 (1226)
T KOG4279|consen 166 FLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNV 242 (1226)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCce
Confidence 4444444444434444455566666542 12345667778888888888899999998888774 43221
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHhHh
Q 007543 176 ---HTALMEAYGRGGRYKNAEAIFRRMQSS-G-PRPSALTYQI-------ILKLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 176 ---~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~-------ll~~~~~~g~~~~A~~~~~~~~~ 236 (599)
|.-.++---+-|+-++|+...-.|.+. | +.||...... +-+.|...+..+.|.+.|++..+
T Consensus 243 ~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 243 RFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred EEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 222223333457788888877766553 3 4566543321 11234455667778888888764
No 369
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.57 E-value=2.3e+02 Score=27.90 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH---cCCHHHH
Q 007543 189 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK---AGGYEKA 265 (599)
Q Consensus 189 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A 265 (599)
.+.-+.++++.++.++ .+.......+..+.+..+.+...+.++.++... +-+...|...++.... .-.++..
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~----~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN----PGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHhccCcHHHH
Confidence 4556677888777644 466677778888888888888888888887642 3466777777765544 2346666
Q ss_pred HHHHHHHHH
Q 007543 266 RKLFALMAE 274 (599)
Q Consensus 266 ~~~~~~m~~ 274 (599)
..+|.+...
T Consensus 122 ~~~y~~~l~ 130 (321)
T PF08424_consen 122 RDVYEKCLR 130 (321)
T ss_pred HHHHHHHHH
Confidence 666666543
No 370
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.54 E-value=1.3e+02 Score=24.89 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 436 KMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
.+.++|..|..+|+--. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776655544 45667777777777777777777764
No 371
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.32 E-value=13 Score=30.80 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 148 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY 183 (599)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 183 (599)
.-+.|.-.+|-.+|.+|.+.|-+|| .|+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4445677788899999999998877 577777543
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.30 E-value=30 Score=24.42 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=12.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMN 165 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~ 165 (599)
.+|.+|...|++++|.+..+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45555555555555555555544
No 373
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.95 E-value=1.3e+02 Score=24.83 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 156 KAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRR 198 (599)
Q Consensus 156 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~ 198 (599)
.+.++|..|...|+.-. ..-|..-...+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777766654433 44556666666667777777777654
No 374
>PRK09687 putative lyase; Provisional
Probab=52.77 E-value=2.2e+02 Score=27.41 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG-MVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
+..+-...+.++.+.++ +++...+..+.+ .++..+-...+.++.+.+ ....+...+..+.. .++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44455556666666665 345555555554 344455555555555543 23455555555553 34666667777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 464 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (599)
.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 777777774 4555555555433 2 123566777777774 677777777753 356666555555553
No 375
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.70 E-value=2.9e+02 Score=28.79 Aligned_cols=239 Identities=10% Similarity=0.138 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhccc--------C-CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFE--------T-NYKEVSKIYDQMQRAG-LQP-DVVSYALLINAYGKARREE 330 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~--------~-~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~ 330 (599)
.+....+|++..+. .|+...|+..|..+ + .......+++.....+ ..+ ....|..+.-.++..+...
T Consensus 298 ~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 298 ESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 34455677776654 34555565555432 2 3344455565555432 233 3345777766666666533
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHH-HHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 007543 331 -EALAVFEEMLDAGVRPTHKAYNILLDAFAISG-MVDQ-ARTVFKCMRRDRCSPDICSYTTML-SAYVNASDMEGAEKFF 406 (599)
Q Consensus 331 -~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~ 406 (599)
-|..+..+ ++..+...|-.-+....+.. ++.- -..+|......-..+-...|++.. ..+......+...
T Consensus 376 ~~a~~l~~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii--- 448 (568)
T KOG2396|consen 376 EVAVKLTTE----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLII--- 448 (568)
T ss_pred HHHHHhhHH----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHH---
Confidence 33333323 33556666655555544332 2221 122333343332334444555444 1111111112222
Q ss_pred HHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--hcCCHhHHHHHHHHHHh-C
Q 007543 407 RRLKQDGFVPNVITY-GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG--KNKDFDSAVVWYKEMES-C 482 (599)
Q Consensus 407 ~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-~ 482 (599)
...... ..|+..|+ +.+++-+.+.|-.++|.+.+..+.... +|+...|..+|..=. ..-+..-+..+++.|.. .
T Consensus 449 ~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 222222 25566554 456777888889999999999988763 566777877775422 22237778888888865 4
Q ss_pred CCCCCHHHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 483 GFPPDQKAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 483 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
| .|+..|.-.+..-...|..+.+-.++-+
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHH
Confidence 5 6777787777776688888777665544
No 376
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=52.43 E-value=1.9e+02 Score=26.54 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=46.3
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 135 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 135 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
|.-+.+||-|.--+...|+++.|.+.|+...+.+..-+-...|.-|.. .--|++.-|.+-|.+.-+..
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcC
Confidence 445678888888888889999999999988887533232333333333 34688888888777766554
No 377
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.13 E-value=2e+02 Score=26.73 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=17.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQS 280 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 280 (599)
+...-...+++.+|+++|++.....+..+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 34444566777777777777765543333
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.85 E-value=81 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=15.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+.......|+.++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566677888888777776653
No 379
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.64 E-value=2.3e+02 Score=27.37 Aligned_cols=20 Identities=5% Similarity=0.252 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcCCHhHHH
Q 007543 454 TIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~ 473 (599)
..|..|+.+++..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 46666777777777765544
No 380
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.23 E-value=42 Score=23.65 Aligned_cols=47 Identities=11% Similarity=0.323 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 153 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
.++...++++.+... .-|..-.-.+|.+|...|++++|.++..++..
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566655443 23555666789999999999999999888764
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.13 E-value=1.1e+02 Score=25.21 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 402 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 402 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
..+-++.+...++.|++.....-+.+|-+.+++..|.++|+-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555566677777777777777777777777777777663
No 382
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.86 E-value=61 Score=21.43 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=14.9
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 465 KNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444445555555555555544444444433
No 383
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.57 E-value=1.6e+02 Score=25.08 Aligned_cols=94 Identities=11% Similarity=0.176 Sum_probs=58.8
Q ss_pred HHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 007543 303 QMQRAGLQPDVV--SYALLINAYGKARREEEALAVFEEMLDAG-----VRPTHKAYNILLDAFAISGM-VDQARTVFKCM 374 (599)
Q Consensus 303 ~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 374 (599)
.|++.+..++.. ..+.++.-....++..-.+.+++.+.... -..+..+|.+++.+..+..- ---+..+|+-|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 334444444432 34666666666666666666666653211 02344567888888766655 44566778888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhc
Q 007543 375 RRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 375 ~~~~~~p~~~~~~~li~~~~~~ 396 (599)
.+.+.+.++.-|..++.++.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 8777788888888888877665
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.18 E-value=2.9e+02 Score=28.02 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=43.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVV--SHTALMEAYGR--GGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~l~~~m~~~ 202 (599)
.+.-+.+.+++..|.++|+.+..+ ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344556899999999999999987 555544 45566666644 66789999999987654
No 385
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.99 E-value=2.1e+02 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 007543 393 YVNASDMEGAEKFFRRLKQD---GFVPNVITYGT--LIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
.-+.++.++|+++++++.+. --.|+.+.|.. ....+...|+.+++.+.+++..+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444555555555555421 11334444322 23333344555555555554443
No 386
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=49.85 E-value=3.2e+02 Score=28.42 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 188 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 188 (599)
+.++.-.+++..+...|.....+.+|.-...|.+.|.
T Consensus 31 ~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~ 67 (696)
T KOG2471|consen 31 SEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGC 67 (696)
T ss_pred cchHHHHHHHHHHHhccccccceeeehhhHHHHhccc
Confidence 4455555555555555544444445555555555554
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.82 E-value=4.4e+02 Score=29.99 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=24.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007543 322 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 360 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (599)
.|......+-+..+++.+....-.++....+.++..|++
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 445556666677777777655545566666666666654
No 388
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.47 E-value=70 Score=21.13 Aligned_cols=33 Identities=9% Similarity=0.334 Sum_probs=22.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 429 AKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
.+.|-++++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456667777777777777777777776666554
No 389
>PRK10941 hypothetical protein; Provisional
Probab=48.91 E-value=2.5e+02 Score=26.88 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
..+.+-.+|.+.++++.|+.+.+.+....+. |+.-+.--.-.|.+.|.+..|..=++..++. .+-.|+.......+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCchhHHHHHHHHH
Confidence 3456777788888999999988888876443 5555666666788888888888888877753 223455544444444
Q ss_pred HH
Q 007543 255 MY 256 (599)
Q Consensus 255 ~~ 256 (599)
..
T Consensus 260 ~l 261 (269)
T PRK10941 260 SI 261 (269)
T ss_pred HH
Confidence 43
No 390
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.50 E-value=2.3e+02 Score=26.48 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 007543 318 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA-ISGMVDQARTVFKCMR 375 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 375 (599)
.++..+-+.++++++...++++...+...+..-.+.|-.+|- ..|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 355566667777777777777776655555555554444442 2233444444444443
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.36 E-value=90 Score=27.98 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.3
Q ss_pred CCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 007543 449 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 486 (599)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 486 (599)
..|+..+|..++.++...|+.++|.++.+++.. +-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 367888888888888888888888888877766 445
No 392
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.27 E-value=2.1e+02 Score=25.79 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=22.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.....|.+++|+.+++.....+. .......-.+.+...|+-++|..-|.+..+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444455555544444333221 1111222334444445555555555444443
No 393
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.26 E-value=1e+02 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
|..|+..|...|..++|.+++.++.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 4444444444444444444444444
No 394
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=46.41 E-value=4.8e+02 Score=29.42 Aligned_cols=223 Identities=12% Similarity=0.073 Sum_probs=115.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHhc----ccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQST-------VTYNSLMS----FETNYKEVSKIYDQMQRA----GLQPDVVSYALLI 320 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~ll~----~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li 320 (599)
.....++.+|..+..++...-..|+. ..|+.+-. ..++++.+.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568889998888887654333322 13333322 257777777776665543 2334556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHH--HHHHHHcCCH--HHHHHHHHHHHhC---CC---CCCHHHHH
Q 007543 321 NAYGKARREEEALAVFEEMLDAGVRPTHKAY---NIL--LDAFAISGMV--DQARTVFKCMRRD---RC---SPDICSYT 387 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~l--i~~~~~~g~~--~~A~~~~~~m~~~---~~---~p~~~~~~ 387 (599)
.+..-.|++++|..+..+..+..-.-+...+ ..+ ...+...|.. .+....|...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888889999998888776554223333332 222 2234455632 2233333333221 00 12234445
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCc----CHHHHHHHH
Q 007543 388 TMLSAYVNA-SDMEGAEKFFRRLKQDGFVPNVITY--GTLIKGYAKVNNLEKMMEIYDKMRVNGIKP----NQTIFTTIM 460 (599)
Q Consensus 388 ~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li 460 (599)
.+..++.+. +...++..-++--......|-...+ ..|+......|++++|...++++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555542 1222222222222222222222222 366777788899999988888877532222 222222222
Q ss_pred HH--HHhcCCHhHHHHHHHH
Q 007543 461 DA--YGKNKDFDSAVVWYKE 478 (599)
Q Consensus 461 ~~--~~~~g~~~~A~~~~~~ 478 (599)
.. ....|+...|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 3356777777666655
No 395
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.03 E-value=2.8e+02 Score=28.09 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=28.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHhh
Q 007543 358 FAISGMVDQARTVFKCMRRDRCSPDIC--SYTTMLSAYV--NASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 411 (599)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566677777777766665 343333 2333333332 34456666666665543
No 396
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.54 E-value=2.6e+02 Score=26.13 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=7.9
Q ss_pred HHhcCCHhHHHHHHHHH
Q 007543 463 YGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m 479 (599)
+.....+++|+..+.+.
T Consensus 88 ~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhccccHHHHHHHHH
Confidence 33444445555444444
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.20 E-value=3.8e+02 Score=27.98 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007543 318 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILL 355 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 355 (599)
.++..+.+.|-.++|..++..+.... +|+...|..+|
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~mi 501 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMI 501 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHH
Confidence 34444444444455555554444332 33444444443
No 398
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.14 E-value=2.2e+02 Score=27.76 Aligned_cols=122 Identities=10% Similarity=0.141 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMT 233 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 233 (599)
+.+|+++|++..+. -..+|+ +..+...--...+.+.+.+...-.+.-.-|.-+..+.|+..+|.+.|+.
T Consensus 232 i~~AE~l~k~ALka----~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKA----GETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHH----HHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred hHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHh
Q 007543 234 LLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS-TVTYNSLM 288 (599)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll 288 (599)
+.+ ...+..-..+...|+.++....-+.+...++.+.-+...+.+ ..+|++.+
T Consensus 301 L~k--e~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 301 LMK--EFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred Hhh--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 399
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.82 E-value=2.8e+02 Score=26.30 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHH
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGV----RPT-------HKAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDIC 384 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~ 384 (599)
+-|...|...+.+.+..++++++...-- ..| ...|..-|.+|....+-.+-..++++...- ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 5677888888899888888888865411 122 235777788888888888888888876543 2335554
Q ss_pred HHHHHHH----HHHhcCCHHHHHH-HHHHHh---hCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--c
Q 007543 385 SYTTMLS----AYVNASDMEGAEK-FFRRLK---QDGFVPNVIT---YGTLIKGYAKVNNLEKMMEIYDKMRVNGIK--P 451 (599)
Q Consensus 385 ~~~~li~----~~~~~g~~~~A~~-~~~~m~---~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p 451 (599)
....+=. ...+.|++++|-. +|+..+ ++| .|...+ |-.|.+.+.+.| ..-|+.-.....+ |
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~-----iNPFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSG-----INPFDSQEAKPYKNDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcC-----CCCCcccccCCCCCCH
Confidence 4433222 2345688888754 444443 344 344433 222333322211 1222221111122 2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 452 NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNI 493 (599)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 493 (599)
.....+.++.+|.+ ++..+-.++++.-. ..+-.|+.+-..
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~~~~-~~IM~DpFIReh 342 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILKSNR-SNIMDDPFIREH 342 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHhhh-ccccccHHHHHH
Confidence 34466788888854 45555555554433 235555554443
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.56 E-value=50 Score=31.74 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007543 242 LKPDQKM-FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN 285 (599)
Q Consensus 242 ~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 285 (599)
+.||... |+..|....+.|++++|++++++.++.|...-..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3455544 5678888899999999999999998888765554443
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.64 E-value=1.5e+02 Score=22.70 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 157 AEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 157 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
+.++++.+.++|+- +..-...+-.+-...|+.+.|.+++..+. .|+. .|...+.++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhhc
Confidence 45566777776643 33333333333335577777888777776 4433 46677777777776655543
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=43.50 E-value=2.8e+02 Score=25.86 Aligned_cols=102 Identities=12% Similarity=0.242 Sum_probs=52.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-C-----------CCCCHHHHHHHH
Q 007543 358 FAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD-G-----------FVPNVITYGTLI 425 (599)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-----------~~p~~~~~~~li 425 (599)
|.+..+..--.++.+-....+++-+.....+++ +...|+..+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344443333333333333334444444433333 34567777777776654321 1 135555566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..|. .+++++|.+++.++-+.|+.|.. +.+++.+.+
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 5544 35677777777777777665543 334444443
No 403
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.26 E-value=86 Score=33.05 Aligned_cols=87 Identities=9% Similarity=0.002 Sum_probs=57.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
..|+...|.+.+.........-..+....|.+...+.|....|-.++.+..... ...+-++-.+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 457777777777766543222233344556666667777777777777766543 3344566677778888888888888
Q ss_pred HHHHHHhC
Q 007543 475 WYKEMESC 482 (599)
Q Consensus 475 ~~~~m~~~ 482 (599)
.|+.+.+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 88887764
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.68 E-value=5.6e+02 Score=29.19 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=18.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 007543 255 MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 288 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 288 (599)
.|.+....+-+..+++.+....-.++..-.+.++
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll 633 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLL 633 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHH
Confidence 3555566666666666666554444444444444
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.49 E-value=1.9e+02 Score=25.74 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=14.4
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 007543 216 KLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~ 236 (599)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 356777777777777777753
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.77 E-value=1.3e+02 Score=26.98 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 159 KVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+..++..+. .|+...|..++..+...|+.++|.++..++...
T Consensus 132 ~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 132 EWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333444443 567777777777777788888887777777663
No 407
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.45 E-value=1.2e+02 Score=25.75 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=34.5
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 162 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 162 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
+.+.+.|++++. --..++..+.+.+..-.|.++++++.+.++..+..|.--.++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455554332 334556666666666667777777776666666555555555555555
No 408
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.20 E-value=1.8e+02 Score=24.03 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCcHHHHHHHHH
Q 007543 472 AVVWYKEMESCGFPPDQKA-KNILLSLAKTADERNEANELLG 512 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~ 512 (599)
..++|..|.+.|+--.... |......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666555444433 4455555666666666666654
No 409
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.92 E-value=3.6e+02 Score=26.17 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=37.9
Q ss_pred CCHHHHHHHH-HHHHHcCCCCCH----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007543 292 TNYKEVSKIY-DQMQRAGLQPDV----VSYALLINAYGKARRE-EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD 365 (599)
Q Consensus 292 ~~~~~a~~~~-~~m~~~g~~~~~----~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 365 (599)
..++++.... ++|++.++ |+. +.|+.++++--=..+- --|.+.+++ ..+|..|+.++|..|+.+
T Consensus 269 ~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSE 338 (412)
T ss_pred CCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHH
Confidence 4455555544 55666554 443 3577777654322211 123333333 347888999999999877
Q ss_pred HHH
Q 007543 366 QAR 368 (599)
Q Consensus 366 ~A~ 368 (599)
-.+
T Consensus 339 L~L 341 (412)
T KOG2297|consen 339 LEL 341 (412)
T ss_pred HHH
Confidence 654
No 410
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.74 E-value=57 Score=31.38 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=29.2
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007543 171 PSVVS-HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 211 (599)
Q Consensus 171 p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 211 (599)
|+..+ ||..|....+.|++++|+.++++.++.|..--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 45444 557888888888888888888888888866433343
No 411
>PRK10941 hypothetical protein; Provisional
Probab=39.47 E-value=3.5e+02 Score=25.89 Aligned_cols=76 Identities=9% Similarity=-0.060 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIILKL 217 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~ 217 (599)
.+.|-..|.+.++++.|+++.+.+..... .+..-+.--.-.|.+.|.+..|..=++..++.-+. |+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 44677889999999999999999998742 35666777777899999999999999988876543 444444444443
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.96 E-value=3.6e+02 Score=25.92 Aligned_cols=130 Identities=10% Similarity=0.105 Sum_probs=74.1
Q ss_pred CHHHHHHHhcc-cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHH
Q 007543 280 STVTYNSLMSF-ETNYKEVSKIYDQMQR-AGLQPDVVSYALLINAYGKARREEEALAVFEEML----DAGVRPTHKAYNI 353 (599)
Q Consensus 280 ~~~~~~~ll~~-~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~ 353 (599)
|...+|+|+.. ..+.++..+-.++... .|-.-....+..+...|++.++.+.+.+...+.. ..|.+.|+....+
T Consensus 80 D~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~ki 159 (412)
T COG5187 80 DRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKI 159 (412)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 44455555543 1223333222333322 2222334567788899999999988888776654 4466666554332
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 354 -LLDAFAISGMVDQARTVFKCMRRDRCSPDI----CSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 354 -li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
|.-.|....-+++.++..+.|.++|..-+. .+|.-+. +....++.+|-.++.+...
T Consensus 160 Rlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 160 RLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 333455555578888888899888754332 2222221 2234577888887777653
No 413
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.14 E-value=3.7e+02 Score=25.84 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFR 407 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~ 407 (599)
.+..+..-|++.++.+.+.+...
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 34444444444444444444433
No 414
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.60 E-value=76 Score=17.91 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALM 180 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~~~~~li 180 (599)
|+++.|..+|+++.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34566666666666542 22455555444
No 415
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.56 E-value=6.1e+02 Score=29.40 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 007543 314 VSYALLINAYGKAR--REEEALAVFEEMLDA 342 (599)
Q Consensus 314 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 342 (599)
.-...++.+|.+.+ ++++|+.+..++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34567888888888 889999999998865
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.53 E-value=2.5e+02 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=11.5
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 007543 392 AYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~ 411 (599)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555666666666655554
No 417
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.21 E-value=4.3e+02 Score=26.09 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--MMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.++.++|.+.++++.+.-...-.|+.+.|- ..+..+...|+..++.+.+++..+
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334444444444444321112233333332 233344445555555555554443
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.86 E-value=4.3e+02 Score=25.93 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCC
Q 007543 316 YALLINAYGKARREEEALAVFEEML----DAGVRPTHKAYNILLD-AFAISGMVDQARTVFKCMRRDR 378 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~ 378 (599)
+.....-||+.|+.+.|++.+.+.. ..|.+.|++.+..-+. .|....-+.+-++..+.+.+.|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 3444455566666655555554432 2344445444433222 2222223334444444444444
No 419
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.59 E-value=3.3e+02 Score=24.47 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=14.2
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~ 481 (599)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467889999988888854
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.02 E-value=2.1e+02 Score=22.00 Aligned_cols=53 Identities=4% Similarity=0.072 Sum_probs=29.7
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCcC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 429 AKVNNLEKMMEIYDKMRV----NGIKPN----QTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~----~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.+.|++.+|.+.+.+..+ .+.... ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677776555544432 221110 12223344556677888888888888754
No 421
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.68 E-value=1.9e+02 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578899999999999999999999876
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.73 E-value=8.5e+02 Score=28.64 Aligned_cols=115 Identities=18% Similarity=0.068 Sum_probs=56.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-----ALTYQIILKL 217 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~~ 217 (599)
.+..+|...|...+|+..|.+.... ...++.|-+.-...+- ..--+..|-.|. ..-|..+++.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg-----~ge~~aL~~lv~~~~p-------~~~sv~dG~t~s~e~t~lhYYlkv~rl 992 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSG-----FGEGNALRKLVYFLLP-------KRFSVADGKTPSEELTALHYYLKVVRL 992 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhc-----cccHHHHHHHHHHhcC-------CCCchhcCCCCCchHHHHHHHHHHHHH
Confidence 4555677888888888888777642 1122222111111110 000011222221 2235566666
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 269 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 269 (599)
+-+.+-.+.+.++-..+++.-....+.-..+++.+.+.....|.+-+|.+.+
T Consensus 993 le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 993 LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 7777777777777666665321111222344555556666666666555443
No 423
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.60 E-value=2.4e+02 Score=24.02 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=44.2
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 007543 440 IYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 502 (599)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 502 (599)
+...+.+.|++++.. -..++..+...++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444555667766543 24567777777777889999999998776667777666677777766
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.81 E-value=5.4e+02 Score=26.14 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------CCC
Q 007543 348 HKAYNILLDAFAISGMVDQARTVFKCMRRDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG---------FVP 416 (599)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p 416 (599)
...+.-+.+.|..+|+++.|++.+.+.+..- .+.....|-.+|..-...|+|.....+..+....- +.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3467888899999999999999999865541 11223445566667778899999999988877641 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
-...+..|...+. ++++.|.+.|-...
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 3333444444333 36666666554443
No 425
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.14 E-value=2.6e+02 Score=30.21 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 007543 353 ILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
+|+.+|..+|++..+.++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 44444444454444444444443
No 426
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.11 E-value=3.1e+02 Score=23.10 Aligned_cols=65 Identities=6% Similarity=0.112 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 416 PNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQ--TIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 416 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
++..+--.+..++.+.. +..+.+.+++++.+.. .|+. ...--|.-++.+.|+++.+.++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444444443 2344555555555411 2221 1222233345556666666666655555
No 427
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.39 E-value=5.2e+02 Score=25.68 Aligned_cols=64 Identities=14% Similarity=0.309 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCCCcCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007543 434 LEKMMEIYDKMRVNGIKPNQT----IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 499 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 499 (599)
.++...++..+++. -|+.. -|.++.....+.|.++..+.+|++++..|..|=...-.+++..+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45666777777654 45543 678888888889999999999999998888887777777776655
No 428
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.16 E-value=2.9e+02 Score=26.01 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 007543 178 ALMEAYGRGGRYKNAEAIFRRMQS----SG-PRPSALTYQIILKLFVEANKFKEAEEVFMTL 234 (599)
Q Consensus 178 ~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 234 (599)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445556666666666666665531 22 1234445555566666666666655554433
No 429
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.42 E-value=3e+02 Score=29.76 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKK--GYAPSVVSHTALMEAYGRGGRYK------NAEAIFRRMQSSGPRPSALTYQII 214 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~g~~p~~~t~~~l 214 (599)
+|..+|...|++-.+.++++..... |-+.=...+|.-|+...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888888888888888877654 22223556777788888888653 3444444443 44477777777
Q ss_pred HHHHH
Q 007543 215 LKLFV 219 (599)
Q Consensus 215 l~~~~ 219 (599)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 66543
No 430
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.27 E-value=5.1e+02 Score=25.24 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=42.6
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----------cCCHhHH
Q 007543 403 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----------NKDFDSA 472 (599)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~A 472 (599)
.++|+.|.+.++.|...++.-+.-.+++.=.+.+.+.+|+.+.. |..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34666666667777777777666666666677777777777653 22235555555542 4555555
Q ss_pred HHHHH
Q 007543 473 VVWYK 477 (599)
Q Consensus 473 ~~~~~ 477 (599)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55544
No 431
>PHA02875 ankyrin repeat protein; Provisional
Probab=30.18 E-value=2.4e+02 Score=28.78 Aligned_cols=194 Identities=13% Similarity=0.045 Sum_probs=100.2
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 299 KIYDQMQRAGLQPDVVS--YALLINAYGKARREEEALAVFEEMLDAGVRPTHK--AYNILLDAFAISGMVDQARTVFKCM 374 (599)
Q Consensus 299 ~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 374 (599)
++++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD-- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH--
Confidence 44566666787776533 234445556777765 344455666555433 12234556667888877655554
Q ss_pred HhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 375 RRDRCSPDIC---SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY--GTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 375 ~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
.|...+.. .-.+.+...+..|+.+-+ +.+.+.|..|+.... ...+...+..|+.+-+..+ .+.|.
T Consensus 90 --~~~~~~~~~~~~g~tpL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~ 159 (413)
T PHA02875 90 --LGKFADDVFYKDGMTPLHLATILKKLDIM----KLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKA 159 (413)
T ss_pred --cCCcccccccCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCC
Confidence 33221111 012333444556766444 444445555443211 1234445567776654444 44454
Q ss_pred CcCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhhcCcHHHHHHHHHh
Q 007543 450 KPNQT---IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKA---KNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 450 ~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
.++.. -++.+. ..+..|+.+ +.+.+.+.|..|+... ..+++......|+.+-+.-+++.
T Consensus 160 ~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 160 CLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred CCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence 44422 233333 344567654 4455566677666532 12455545567887777776654
No 432
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.07 E-value=2.9e+02 Score=27.35 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 155 NKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
++...+++.+.+. -|+. .-|-.+++.....|.+++++.+|++.+..|..|=...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4666677766654 3453 4688888888889999999999999999988887776666666654
No 433
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.02 E-value=2.4e+02 Score=22.39 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=11.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 007543 353 ILLDAFAISGMVDQARTVFKCM 374 (599)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m 374 (599)
.++..|...|+.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666555554
No 434
>PRK09857 putative transposase; Provisional
Probab=29.87 E-value=3.2e+02 Score=26.53 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 487 (599)
.++....+.++.++..++++.+.+. +++.....-++..-+...|.-+++.++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444455555555555555443 222233334455555555655667777777777776554
No 435
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.46 E-value=4.7e+02 Score=24.41 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=70.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
.-+..|.+.-++.-|-..++++.+ ...+--++ --|.+..+.+---++.+-....++.-+..-+..++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh-----hHHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 456777777777777777776664 12222222 23444444444444444444455554444444443 45677
Q ss_pred CHHHHHHHHHHhHhcc---------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007543 223 KFKEAEEVFMTLLDEE---------KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS 280 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 280 (599)
+..+|+..++.-.... +.--.|.+.....++..+ ..+++++|.++++++-+.|..|.
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 7777777666554310 000144555555555533 45677778877777777776654
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.96 E-value=3e+02 Score=25.87 Aligned_cols=61 Identities=7% Similarity=0.016 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhcc--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDEE--KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
..+..-|...|++++|.++|+.+...- +.-..+...+...+..++.+.|+.+..+.+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567888888888888888875321 1112333445566677777777777766654443
No 437
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=28.85 E-value=1.9e+02 Score=19.63 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=9.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 007543 181 EAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~ 201 (599)
-++.+.|++++|.+..+.+.+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444444444
No 438
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.80 E-value=2.8e+02 Score=21.98 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCC
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN--NLEKMMEIYDKMRVNG 448 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~ 448 (599)
..++..|...|+.++|...++++.... -.......++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 455667777788888888888764221 12222333444433332 2233445555555444
No 439
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.73 E-value=4.8e+02 Score=24.18 Aligned_cols=95 Identities=9% Similarity=0.070 Sum_probs=43.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 360 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMME 439 (599)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 439 (599)
..+++++|.+.+-.- .+.|+- -..++.++...|+.+.|+.+++...-.. .+......++.. ..++.+.+|..
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHH
Confidence 445566666555221 112221 1235556666677777766666543221 122222223333 34466666666
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHh
Q 007543 440 IYDKMRVNGIKPNQTIFTTIMDAYGK 465 (599)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~ 465 (599)
+-+...+.. ....+..++..+..
T Consensus 162 ~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 162 FQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHhCchhh---hHHHHHHHHHHHHH
Confidence 655543210 12355555555543
No 440
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.63 E-value=1.1e+02 Score=21.95 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 007543 416 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 464 (599)
Q Consensus 416 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (599)
|....++.++..+++-.-+++++..+.++...|. .+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3344455555555555555555555555555442 34444444444443
No 441
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.34 E-value=1.2e+03 Score=31.28 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 200 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 200 (599)
.....+|...|......|-=--++++-.. ..=+...-.|.+.|.+++|..+|++..
T Consensus 2454 ~~~~dsl~elY~~L~E~Dm~~Glwrrr~~-------~~eT~~a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2454 ESCLDSLAELYRSLNEEDMFYGLWRRRAK-------FPETMVALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhc-------cHHHHHHHHHHHhhhHHHHhhHHHHHH
Confidence 34455666666665555544444433221 111233345666777777777776653
No 442
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.14 E-value=5.9e+02 Score=25.06 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE---ANKFKEAEEV 230 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~---~g~~~~A~~~ 230 (599)
.+.-+.++++..+.. +.+...+-.++..+.+....++..+.++++....+. +...|...|..... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 355667788877764 347778888888888888888888888888876433 66677777765544 2245666666
Q ss_pred HHHhHhcc---CCCC------CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 231 FMTLLDEE---KSPL------KPD-----QKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 231 ~~~~~~~~---~~~~------~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
|.+.+..- ..+. .++ ..++..+.....++|..+.|..+++.+.+.+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66554310 0010 011 1223334445556777777777777776654
No 443
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.96 E-value=42 Score=32.78 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
.|.+++|++.|...++.. ++....|..-.+++.+.+.+..|+.=+....+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 344555555555444432 22333333334444444555444444444433
No 444
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.78 E-value=1.4e+02 Score=32.28 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=0.0
Q ss_pred hcCcHHHHHHHHHhccCCCCCCCcccccccccCC
Q 007543 500 TADERNEANELLGNFNHPNNEPGINGLSISVDEE 533 (599)
Q Consensus 500 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~i~~~ 533 (599)
..|+..+|.+.+-.+...+..|...|..++.+..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ----------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 4578888888777777888888888886665544
No 445
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.63 E-value=8e+02 Score=27.24 Aligned_cols=84 Identities=14% Similarity=0.003 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---C----------CCHHHHHHHHHHHHhcC
Q 007543 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY---A----------PSVVSHTALMEAYGRGG 187 (599)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~----------p~~~~~~~li~~~~~~g 187 (599)
..+.+..+.+..+...+......++... .|++..|..+++++...|. . .+......|+.++. .+
T Consensus 183 I~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~-~~ 259 (709)
T PRK08691 183 VADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII-NQ 259 (709)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-cC
Confidence 3344444444444556666665555544 5899999999887665331 1 12222334444443 47
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 007543 188 RYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p~ 207 (599)
+...++.+++++...|..+.
T Consensus 260 d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 260 DGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred CHHHHHHHHHHHHHhCCCHH
Confidence 78888888888888776543
No 446
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.53 E-value=5.7e+02 Score=24.72 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=62.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
.++..+.+..++....+.+..+. .+..-...++.+...|++..|++++.+..+. .. .-.-|..+=..- .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---H
Confidence 45666666666666666666665 3444556677777888888888887776542 10 000111111111 1
Q ss_pred CHHHHHHHHHHhHhcc--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEE--KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
++++-....+.+++.. +.-..-|...|..+..+|.-.|+...+.+-+...
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1111111111111100 0001457778888888888888877766444433
No 447
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.40 E-value=23 Score=34.42 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHhH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~ 471 (599)
....|.++.|++.|...++.+ +|....|..-.+.+.+.++...|++=+....+. .||.. -|-.=-.+-.-.|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 456788999999999988876 567788888888899999999999988887754 56643 44444455567899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 472 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
|...+....+.++.+....| +-...-+.+..++-++..++
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er 240 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYER 240 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHH
Confidence 99999999887666554333 33333344444444444443
No 448
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.33 E-value=5.6e+02 Score=24.51 Aligned_cols=115 Identities=18% Similarity=0.119 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA------- 396 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------- 396 (599)
+..+|..+|..+.+.|. ......|...|.. ..+..+|...|+...+.|..+-..+...+...|...
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 35556666665554442 2222223333333 235666666666666665333211122222222222
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 448 (599)
-+...|...|.++-..+ +......|...|.. ..+.++|...|.+..+.|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 12235667777666655 33444444444432 236777777777777765
No 449
>PRK13342 recombination factor protein RarA; Reviewed
Probab=27.19 E-value=7e+02 Score=25.60 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhHhccCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPL-KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIY 301 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~ 301 (599)
..++...++.........++ ..+......++... .|+...++.+++.+... ...=..+...+++
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------------~~~It~~~v~~~~ 216 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG-------------VDSITLELLEEAL 216 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------------cCCCCHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHH
Q 007543 302 DQMQRAGLQPDVVSYALLINAYGKA---RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM-----VDQARTVFKC 373 (599)
Q Consensus 302 ~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~ 373 (599)
...... ...+...+..+++++.+. .+.+.|+..+..|.+.|..|....-..++.++-..|. ..-|...++.
T Consensus 217 ~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~ 295 (413)
T PRK13342 217 QKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADA 295 (413)
T ss_pred hhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 374 MRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 374 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
...-|.+-........+-.++.+-....+...++...+
T Consensus 296 ~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 296 VERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.04 E-value=2.7e+02 Score=24.44 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=31.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 165 NKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 165 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
...|+..+. .-..++..+...++.-.|.++++++.+.++..+..|.--.|..+.+.|-+
T Consensus 18 ~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344544332 22344444444555556666666666666655555555555555555533
No 451
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.92 E-value=5.3e+02 Score=23.84 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=48.5
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 140 DFLMLITAYG--KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 140 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
.|..+++++. ..+++++|.+.+-.- .+.|+- ...+++++...|+.+.|+.+++.+.-. -.+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 3445555554 345666676666222 122221 224777777788888888887775321 1122333333333
Q ss_pred HHHcCCHHHHHHHHHHhH
Q 007543 218 FVEANKFKEAEEVFMTLL 235 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~ 235 (599)
...+.+.+|...-+...
T Consensus 151 -La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYP 167 (226)
T ss_pred -HHcCCHHHHHHHHHhCc
Confidence 56677888877666553
No 452
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=25.32 E-value=2.6e+02 Score=32.22 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=49.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 502 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 502 (599)
....+.+++.+|..|...|+.+.. ..|..+...+.+.+.+.+|..+|+.-++....|-...-..+.....+.+
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 455677888888888877776664 3667777777778888888888888777666676655444444444333
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.27 E-value=82 Score=34.91 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=62.9
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 472 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (599)
+...|+.+.|++.-+.+ -+..+|..|+..-.+.|+.+-|+..|++... |+.|--.|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 45567777777655432 2566778888888888888877777776642 33444456677777776
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 473 VVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 473 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.++.+.+.. +.|..+ ......-.|++++-.++++..
T Consensus 718 ~Km~~iae~---r~D~~~---~~qnalYl~dv~ervkIl~n~ 753 (1202)
T KOG0292|consen 718 SKMMKIAEI---RNDATG---QFQNALYLGDVKERVKILENG 753 (1202)
T ss_pred HHHHHHHHh---hhhhHH---HHHHHHHhccHHHHHHHHHhc
Confidence 655555432 223322 222233478889888888774
No 454
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=25.12 E-value=7.3e+02 Score=25.14 Aligned_cols=56 Identities=13% Similarity=-0.047 Sum_probs=40.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHh--cCCHHHHHHHHHHH
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVS----HTALMEAYGR--GGRYKNAEAIFRRM 199 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~--~g~~~~A~~l~~~m 199 (599)
.+.-+.+.+++..|.++|+++..+...|+... |-.+..+|.. .-++++|.+.++++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 45567788999999999999998865544433 3444445433 56788999999863
No 455
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.08 E-value=5.5e+02 Score=23.74 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 380 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP---NVITY--GTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
.+...-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++ ..-|......|++++|++....+.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 44555556666555555555555555543 333333 22222 234555566777777777666654
No 456
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.07 E-value=2e+02 Score=20.60 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
....++.++..+++..-.++++..+.+....|. .+..+|.--++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 444555555555555555555555555555553 24444444444333
No 457
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.99 E-value=3.9e+02 Score=26.01 Aligned_cols=41 Identities=5% Similarity=0.156 Sum_probs=17.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 335 VFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
+++.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+++.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 34444444444444444444334444444444444444443
No 458
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.79 E-value=1.6e+02 Score=17.66 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHH
Q 007543 469 FDSAVVWYKEMESCGFPPDQKAKN 492 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~~~~~~ 492 (599)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4455555555554 345554443
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.59 E-value=4.1e+02 Score=23.24 Aligned_cols=60 Identities=5% Similarity=-0.097 Sum_probs=38.5
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcH
Q 007543 444 MRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADER 504 (599)
Q Consensus 444 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 504 (599)
+.+.|++++..= ..++..+...++.-.|.++++.+.+.+..++..|.+.-+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 345566655442 234444445566667888888888877667777766667777777643
No 460
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.52 E-value=6.9e+02 Score=24.64 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRR 408 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~ 408 (599)
...-|++.|+-+.|++.+.+
T Consensus 110 kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 33445555555555554443
No 461
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.61 E-value=3.4e+02 Score=21.92 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLD 356 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (599)
+++.+.++...++|+++.+-|.++| ..+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4555677778888888888888777 555544444433
No 462
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.31 E-value=1.8e+02 Score=23.28 Aligned_cols=46 Identities=28% Similarity=0.344 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
++..+...+..-.|.++++.+.+.++..+..|.--.++.+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455555666666666666555665555555555555543
No 463
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.15 E-value=2.1e+02 Score=30.90 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=18.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMN 165 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 165 (599)
+.-|. .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 44454 6788888899999999985443
No 464
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=23.08 E-value=1.6e+02 Score=30.29 Aligned_cols=96 Identities=13% Similarity=0.117 Sum_probs=40.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHH
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITY-GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSA 472 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 472 (599)
+.+.++.|..++.++++. .||-..| ..-..++.+.+++..|..=+.+.++.. |+ ...|--=..++.+.+.+.+|
T Consensus 16 ~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred ccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHH
Confidence 344555555555555543 2332222 222244455555555555544444332 22 11222222333344444445
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 473 VVWYKEMESCGFPPDQKAKNILLS 496 (599)
Q Consensus 473 ~~~~~~m~~~g~~p~~~~~~~ll~ 496 (599)
+..|+.... +.|+..-....+.
T Consensus 92 ~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 92 LLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHhhh--cCcCcHHHHHHHH
Confidence 554444444 4455544444443
No 465
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.01 E-value=1.1e+03 Score=26.57 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHh
Q 007543 119 NVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY-------------APSVVSHTALMEAYGR 185 (599)
Q Consensus 119 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~~~~li~~~~~ 185 (599)
++..+.++.+.+..++..+......+... ..|++.+|+.++++....+- ..+......++..+ .
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-A 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 34444555544444445555544333332 36888888888777554321 11222233333333 3
Q ss_pred cCCHHHHHHHHHHHHhCCCC
Q 007543 186 GGRYKNAEAIFRRMQSSGPR 205 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~ 205 (599)
.|+..+++.+++++...|..
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 46666666666666666554
No 466
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.74 E-value=1.7e+03 Score=28.66 Aligned_cols=60 Identities=8% Similarity=-0.075 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 453 QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
..+|-...+...++|+++.|...+-++.+.+ .| ..+.-....+...|+...|..++++..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3488888888889999999998887777754 33 335555677888999999999988865
No 467
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.69 E-value=4.4e+02 Score=22.35 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 164 MNKKGYAPSVVSHTALMEAYGRG-GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 164 m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
+.+.|+..+. .-..++..+... +..-.|.++++.+.+.++..+..|.--.++.+.+.|-
T Consensus 8 l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444554332 233444444443 3455667777777666665566655555555555553
No 468
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=22.60 E-value=6.8e+02 Score=23.89 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS----G---MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----A 396 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 396 (599)
+..+|...|++..+.|..+...+...+...|..- + +...|...|.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5667777777776666333222233333333332 1 2236777777776665 33344444433332 3
Q ss_pred CCHHHHHHHHHHHhhCC
Q 007543 397 SDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~ 413 (599)
.+.++|...|...-+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 36777777777777766
No 469
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=22.59 E-value=2.8e+02 Score=19.50 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=13.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
..|++=+|-++++.+=.....+....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 35555555555555533222223334444443
No 470
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.43 E-value=3.6e+02 Score=20.60 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 474 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 474 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
++|+-....|+..|+..|.++++.+...=-.+...++++.+.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555666666666666666655555555666666553
No 471
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.32 E-value=3.2e+02 Score=22.02 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 007543 459 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKN 492 (599)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 492 (599)
+++-+.++...++|+++++-|.+.| ..+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4455556666666666666666665 44444333
No 472
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.31 E-value=9.6e+02 Score=25.51 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=39.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 133 WWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY-------------APSVVSHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
+...+......++... .|++..|..++++....|- .++......++.++ ..|+.+.++.++++|
T Consensus 195 gi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~~d~~~~l~~~~~l 271 (509)
T PRK14958 195 NVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AAKAGDRLLGCVTRL 271 (509)
T ss_pred CCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 3455655555554442 5888888888887665431 01112222333333 235666666666666
Q ss_pred HhCCCCCC
Q 007543 200 QSSGPRPS 207 (599)
Q Consensus 200 ~~~g~~p~ 207 (599)
...|..|.
T Consensus 272 ~~~g~~~~ 279 (509)
T PRK14958 272 VEQGVDFS 279 (509)
T ss_pred HHcCCCHH
Confidence 66665543
No 473
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=22.23 E-value=8e+02 Score=26.10 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--------------HH
Q 007543 118 WNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALME--------------AY 183 (599)
Q Consensus 118 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--------------~~ 183 (599)
.+.....++.+....++..+...+..+. ....|.+.+|..+++++...|- +.++...+-. ..
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~ 255 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEA 255 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456666777777776666666554443 3457889999999999988752 2222221111 11
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH
Q 007543 184 GRGGRYKNAEAIFRRMQSSGPRPSA 208 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~~~g~~p~~ 208 (599)
...|+..+++..++++.+.|..|..
T Consensus 256 i~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 256 ILKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred HHccCHHHHHHHHHHHHHhCcCHHH
Confidence 2356677777777777776665443
No 474
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=6.6e+02 Score=23.59 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=55.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHH
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHK-AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT-MLSAYVNASDMEGA 402 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A 402 (599)
...+++.|+..|.+.+.. .|+.. -|+.-+.++.+..+++.+..--....+ +.||.+--.. +..+......+++|
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 344555666655555543 45543 344455556666666665544444333 2444433222 33345556666666
Q ss_pred HHHHHHHh----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 403 EKFFRRLK----QDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 403 ~~~~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (599)
+..+.+.. +..+.|-......|..+=-+.=...+..++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 66666652 233334444445554443333344444444443
No 475
>PF15469 Sec5: Exocyst complex component Sec5
Probab=22.07 E-value=5.5e+02 Score=22.63 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 007543 178 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLL 235 (599)
Q Consensus 178 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 235 (599)
-++..-.+..++..++.++++.. -.+....-+.-+.+.|+++.+...|.++.
T Consensus 62 pll~~~~k~~~l~~~l~~l~r~~------flF~LP~~L~~~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 62 PLLERREKADKLRNALEFLQRNR------FLFNLPSNLRECIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHccHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 33333334444455555554432 22233345556666677777776666654
No 476
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.94 E-value=4.9e+02 Score=22.02 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 443 KMRVNGIKPNQTIFTTIMDAYGKN-KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 443 ~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
.+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 345567666543 23344455543 4577889999999887766778887777777777773
No 477
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.70 E-value=2.2e+02 Score=22.81 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
.++..+...+..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3455566666677788999999887767788887777778877774
No 478
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.57 E-value=3.7e+02 Score=20.50 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 439 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
++|+-....|+..|..+|..+++.+.-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777888888888887777766666777777777643
No 479
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=20.99 E-value=9.2e+02 Score=24.80 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=57.4
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHhC
Q 007543 306 RAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAF--------AISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 306 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--------~~~g~~~~A~~~~~~m~~~ 377 (599)
...+.||..+.|-+.+.++..-..+-...+|+-..+.+ .|=.+.+-++|-.- .+...-++++++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34578899998888888888878888888888887766 44433333333211 2344567888888888665
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007543 378 RCSPDICSYTTMLSAYV 394 (599)
Q Consensus 378 ~~~p~~~~~~~li~~~~ 394 (599)
--.-|+.-+..|...|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 33345555666666555
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=20.98 E-value=4.7e+02 Score=23.67 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
..+.+++.+...|+++.|.++|--+.... +.|+. .|..=+..+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 34578888888899999999998887653 22332 4666666666666554444444444
No 481
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=20.89 E-value=4.8e+02 Score=21.53 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHH
Q 007543 435 EKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYK 477 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 477 (599)
++..++|.-|..+|+-.. +..|......+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 335667777777766555 3366777777777888888877765
Done!