Query 007543
Match_columns 599
No_of_seqs 829 out of 3565
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 04:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.1E-35 1.4E-39 317.0 42.0 438 66-520 80-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.7E-33 3E-37 298.7 38.3 398 106-519 88-547 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.5E-30 5.2E-35 271.0 24.7 205 297-501 9-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.4E-29 1.2E-33 260.8 24.8 185 247-431 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-25 5.9E-30 228.0 46.4 355 113-481 10-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-24 4.6E-29 221.3 46.3 342 112-468 43-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 7.4E-22 2.5E-26 205.1 39.2 327 136-496 24-371 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 9.3E-21 3.2E-25 196.8 42.6 325 108-479 32-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 6.8E-22 2.3E-26 208.9 34.3 399 110-519 14-480 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.4E-20 4.6E-25 198.9 39.0 406 72-490 8-484 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.8E-19 6.2E-24 191.5 38.0 389 112-515 35-489 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.3E-18 4.4E-23 174.3 42.2 317 138-499 3-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 5.3E-18 1.8E-22 169.8 40.4 315 172-519 2-337 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.3E-18 4.5E-23 184.8 36.7 365 139-519 26-459 (537)
15 3hym_B Cell division cycle pro 99.8 3.9E-18 1.3E-22 168.8 31.9 298 137-503 21-320 (330)
16 3hym_B Cell division cycle pro 99.8 8.8E-18 3E-22 166.2 32.2 288 103-433 23-320 (330)
17 2xm6_A Protein corresponding t 99.8 3.2E-15 1.1E-19 156.9 52.3 333 115-481 56-431 (490)
18 2xm6_A Protein corresponding t 99.8 3.1E-15 1.1E-19 157.0 48.6 344 139-515 40-430 (490)
19 1fch_A Peroxisomal targeting s 99.8 5.3E-18 1.8E-22 170.8 25.1 263 210-513 66-355 (368)
20 1fch_A Peroxisomal targeting s 99.8 1.3E-17 4.6E-22 167.9 26.3 306 147-479 34-356 (368)
21 4eqf_A PEX5-related protein; a 99.8 6.6E-18 2.3E-22 170.1 21.7 265 208-513 65-352 (365)
22 2ooe_A Cleavage stimulation fa 99.8 4.9E-15 1.7E-19 157.1 43.7 403 101-516 12-491 (530)
23 4eqf_A PEX5-related protein; a 99.8 6.1E-17 2.1E-21 163.1 26.5 276 172-478 64-352 (365)
24 3cv0_A Peroxisome targeting si 99.7 1E-15 3.5E-20 151.1 28.7 277 174-515 22-313 (327)
25 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.9E-20 149.4 30.2 97 139-237 22-118 (327)
26 3spa_A Mtrpol, DNA-directed RN 99.7 4.3E-18 1.5E-22 182.0 11.5 128 383-514 127-258 (1134)
27 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-18 1.4E-22 182.1 11.3 124 312-435 126-253 (1134)
28 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4E-20 148.1 27.1 258 181-488 7-268 (291)
29 4g1t_A Interferon-induced prot 99.7 1.5E-14 5.1E-19 150.9 35.2 364 136-519 49-461 (472)
30 1b89_A Protein (clathrin heavy 99.7 7.2E-17 2.5E-21 160.4 16.2 278 150-474 15-303 (449)
31 2ooe_A Cleavage stimulation fa 99.7 9.5E-13 3.2E-17 139.5 45.1 404 67-481 10-491 (530)
32 3mkr_A Coatomer subunit epsilo 99.7 1.2E-14 4.1E-19 141.0 26.9 252 148-447 9-264 (291)
33 1b89_A Protein (clathrin heavy 99.7 1.1E-15 3.8E-20 152.0 16.3 348 114-515 15-370 (449)
34 1xi4_A Clathrin heavy chain; a 99.6 3.3E-12 1.1E-16 141.3 41.3 281 185-512 1088-1379(1630)
35 3uq3_A Heat shock protein STI1 99.6 1.7E-13 5.6E-18 130.0 27.0 226 173-445 5-234 (258)
36 3uq3_A Heat shock protein STI1 99.6 2.8E-13 9.6E-18 128.4 26.3 226 138-412 5-236 (258)
37 2pl2_A Hypothetical conserved 99.6 9.7E-14 3.3E-18 128.4 22.3 200 310-515 2-212 (217)
38 1xi4_A Clathrin heavy chain; a 99.6 7.3E-12 2.5E-16 138.6 40.2 315 150-513 1088-1441(1630)
39 2pl2_A Hypothetical conserved 99.6 3.7E-13 1.3E-17 124.5 23.5 198 171-409 3-211 (217)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.6E-13 8.8E-18 130.2 21.4 119 151-274 18-139 (275)
41 4g1t_A Interferon-induced prot 99.6 9E-12 3.1E-16 129.7 34.8 313 171-491 49-408 (472)
42 3u4t_A TPR repeat-containing p 99.6 8.3E-13 2.8E-17 126.5 24.9 131 139-274 4-136 (272)
43 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-12 6.5E-17 122.5 27.0 207 246-490 37-244 (252)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-13 5.5E-18 131.6 19.5 185 185-410 17-204 (275)
45 2h6f_A Protein farnesyltransfe 99.6 1.5E-12 5.2E-17 130.6 27.0 248 138-428 97-363 (382)
46 2vq2_A PILW, putative fimbrial 99.5 3.8E-12 1.3E-16 117.8 27.5 202 245-481 7-210 (225)
47 2ho1_A Type 4 fimbrial biogene 99.5 3.2E-12 1.1E-16 120.9 27.5 202 138-377 37-238 (252)
48 1ouv_A Conserved hypothetical 99.5 3.1E-11 1.1E-15 115.8 34.3 222 208-482 6-251 (273)
49 3u4t_A TPR repeat-containing p 99.5 1.7E-12 5.7E-17 124.4 25.3 232 213-481 8-249 (272)
50 2vq2_A PILW, putative fimbrial 99.5 3.8E-12 1.3E-16 117.8 26.0 201 138-376 8-210 (225)
51 2h6f_A Protein farnesyltransfe 99.5 2.7E-12 9.1E-17 128.9 26.6 230 173-444 97-344 (382)
52 1ouv_A Conserved hypothetical 99.5 2.8E-11 9.7E-16 116.0 32.8 126 137-274 5-142 (273)
53 2q7f_A YRRB protein; TPR, prot 99.5 1E-12 3.5E-17 123.4 21.9 201 137-377 22-222 (243)
54 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.3E-17 122.8 21.6 199 246-481 23-221 (243)
55 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-12 5.6E-17 134.4 24.2 367 113-515 14-419 (452)
56 3sf4_A G-protein-signaling mod 99.5 2.4E-12 8.3E-17 130.9 21.0 305 172-504 8-363 (406)
57 4a1s_A PINS, partner of inscut 99.5 1.7E-12 5.9E-17 132.5 19.5 283 140-481 50-371 (411)
58 4a1s_A PINS, partner of inscut 99.5 4.3E-12 1.5E-16 129.6 22.2 286 173-516 48-371 (411)
59 3sf4_A G-protein-signaling mod 99.5 2.3E-12 7.7E-17 131.1 20.1 306 136-470 7-364 (406)
60 4e6h_A MRNA 3'-END-processing 99.5 2.9E-10 9.8E-15 121.8 36.8 427 85-520 50-573 (679)
61 3e4b_A ALGK; tetratricopeptide 99.5 4.7E-11 1.6E-15 123.4 29.9 297 119-448 55-388 (452)
62 3ro2_A PINS homolog, G-protein 99.4 5.9E-12 2E-16 124.0 21.0 278 175-481 7-331 (338)
63 3vtx_A MAMA; tetratricopeptide 99.4 3E-11 1E-15 108.2 23.0 172 312-489 4-175 (184)
64 3ro2_A PINS homolog, G-protein 99.4 6.1E-12 2.1E-16 123.9 19.1 278 140-447 7-332 (338)
65 4abn_A Tetratricopeptide repea 99.4 2.6E-11 9E-16 126.1 23.7 214 294-514 84-318 (474)
66 2ond_A Cleavage stimulation fa 99.4 3.8E-10 1.3E-14 110.3 29.5 217 225-481 33-269 (308)
67 2ond_A Cleavage stimulation fa 99.4 3.7E-10 1.3E-14 110.4 28.9 218 119-377 33-270 (308)
68 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-10 4.2E-15 104.1 23.3 130 138-273 5-134 (184)
69 4abn_A Tetratricopeptide repea 99.4 3.2E-11 1.1E-15 125.5 21.4 215 118-372 84-316 (474)
70 3ulq_A Response regulator aspa 99.4 6.3E-11 2.1E-15 119.8 22.2 170 179-376 109-292 (383)
71 3nf1_A KLC 1, kinesin light ch 99.4 4.4E-12 1.5E-16 123.8 13.1 179 173-376 27-223 (311)
72 3ulq_A Response regulator aspa 99.3 3.7E-11 1.3E-15 121.5 19.4 237 148-410 22-291 (383)
73 1hz4_A MALT regulatory protein 99.3 2.5E-09 8.4E-14 107.5 31.0 276 178-481 19-321 (373)
74 3nf1_A KLC 1, kinesin light ch 99.3 2.6E-11 8.8E-16 118.3 15.8 249 207-481 26-306 (311)
75 1hz4_A MALT regulatory protein 99.3 5.1E-09 1.7E-13 105.2 30.7 304 142-481 18-348 (373)
76 3as5_A MAMA; tetratricopeptide 99.3 6.8E-10 2.3E-14 98.8 20.6 162 315-480 10-171 (186)
77 3as5_A MAMA; tetratricopeptide 99.2 1.8E-09 6E-14 96.1 22.2 92 142-235 12-103 (186)
78 3q15_A PSP28, response regulat 99.2 3.2E-09 1.1E-13 106.9 26.6 237 213-481 106-364 (378)
79 3q15_A PSP28, response regulat 99.2 1.5E-08 5.1E-13 102.0 29.0 232 252-515 107-363 (378)
80 4e6h_A MRNA 3'-END-processing 99.2 1E-07 3.5E-12 102.1 36.4 391 121-519 51-535 (679)
81 4i17_A Hypothetical protein; T 99.2 3E-09 1E-13 98.7 21.8 152 312-467 6-167 (228)
82 4gyw_A UDP-N-acetylglucosamine 99.2 1.3E-09 4.5E-14 118.1 21.7 165 312-481 8-173 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.2 1.2E-09 4.1E-14 118.4 21.0 166 137-341 8-173 (723)
84 4i17_A Hypothetical protein; T 99.2 5.4E-09 1.9E-13 96.9 22.7 135 136-275 5-146 (228)
85 1qqe_A Vesicular transport pro 99.1 4.2E-09 1.4E-13 101.9 20.4 194 322-517 46-269 (292)
86 3edt_B KLC 2, kinesin light ch 99.1 6.7E-10 2.3E-14 106.3 14.0 216 300-517 30-281 (283)
87 3edt_B KLC 2, kinesin light ch 99.1 1.7E-09 5.8E-14 103.5 16.7 213 208-446 43-280 (283)
88 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.6E-13 83.5 17.6 130 140-275 3-132 (136)
89 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.7E-13 83.4 17.4 128 351-481 4-131 (136)
90 3mv2_B Coatomer subunit epsilo 99.0 3.1E-07 1.1E-11 87.5 25.2 170 311-488 98-286 (310)
91 3urz_A Uncharacterized protein 99.0 4E-08 1.4E-12 89.7 18.6 175 315-496 6-198 (208)
92 3qky_A Outer membrane assembly 98.9 3E-08 1E-12 94.0 18.2 172 311-488 13-228 (261)
93 1qqe_A Vesicular transport pro 98.9 8.7E-08 3E-12 92.6 20.7 167 313-481 77-268 (292)
94 3qky_A Outer membrane assembly 98.9 1.1E-07 3.8E-12 90.1 20.6 172 136-342 13-224 (261)
95 2uy1_A Cleavage stimulation fa 98.9 3.1E-06 1.1E-10 87.8 32.5 341 152-515 28-411 (493)
96 3urz_A Uncharacterized protein 98.9 6.6E-08 2.2E-12 88.2 17.5 114 141-260 7-136 (208)
97 3rjv_A Putative SEL1 repeat pr 98.9 3.4E-07 1.2E-11 83.7 21.2 176 296-483 4-198 (212)
98 2pzi_A Probable serine/threoni 98.9 3.7E-08 1.2E-12 107.1 17.0 184 324-514 402-602 (681)
99 3mv2_B Coatomer subunit epsilo 98.9 1.3E-07 4.5E-12 90.1 18.5 181 332-519 85-284 (310)
100 2uy1_A Cleavage stimulation fa 98.8 1.4E-06 4.9E-11 90.4 26.5 335 150-514 6-380 (493)
101 2pzi_A Probable serine/threoni 98.8 6.7E-08 2.3E-12 105.1 16.7 152 184-375 402-561 (681)
102 3dra_A Protein farnesyltransfe 98.8 4.9E-06 1.7E-10 80.0 27.3 219 152-410 47-285 (306)
103 3rjv_A Putative SEL1 repeat pr 98.8 6.9E-07 2.4E-11 81.6 20.4 178 330-519 3-199 (212)
104 3qou_A Protein YBBN; thioredox 98.8 2.2E-07 7.5E-12 89.4 17.5 167 310-480 114-282 (287)
105 3dra_A Protein farnesyltransfe 98.8 6.7E-06 2.3E-10 79.0 27.5 220 187-446 47-286 (306)
106 2r5s_A Uncharacterized protein 98.8 8.5E-08 2.9E-12 84.9 13.3 128 141-275 9-137 (176)
107 2yhc_A BAMD, UPF0169 lipoprote 98.8 7.9E-07 2.7E-11 82.1 20.4 205 137-378 3-214 (225)
108 2ifu_A Gamma-SNAP; membrane fu 98.8 2.3E-07 7.9E-12 90.3 17.5 184 321-509 44-253 (307)
109 3qou_A Protein YBBN; thioredox 98.8 3.2E-07 1.1E-11 88.3 18.3 178 123-340 104-282 (287)
110 2r5s_A Uncharacterized protein 98.8 1.1E-07 3.8E-12 84.1 13.8 161 316-480 9-171 (176)
111 4ga2_A E3 SUMO-protein ligase 98.8 9.5E-08 3.2E-12 82.0 12.7 139 115-261 10-149 (150)
112 2vsy_A XCC0866; transferase, g 98.7 2.6E-07 8.8E-12 98.4 18.8 153 292-448 3-158 (568)
113 4ga2_A E3 SUMO-protein ligase 98.7 3.4E-08 1.1E-12 84.9 9.6 142 356-503 5-149 (150)
114 2yhc_A BAMD, UPF0169 lipoprote 98.7 9.9E-07 3.4E-11 81.4 19.5 184 313-518 4-214 (225)
115 2vsy_A XCC0866; transferase, g 98.7 6.6E-07 2.3E-11 95.3 20.0 153 116-276 3-158 (568)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.8E-06 6E-11 78.7 20.1 145 351-513 9-168 (213)
117 2qfc_A PLCR protein; TPR, HTH, 98.6 1.9E-05 6.5E-10 76.0 26.4 167 314-481 76-265 (293)
118 2ifu_A Gamma-SNAP; membrane fu 98.6 1E-06 3.5E-11 85.7 17.5 181 151-375 29-222 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.2E-06 7.6E-11 78.0 18.2 132 140-276 8-151 (213)
120 3u3w_A Transcriptional activat 98.6 8.7E-06 3E-10 78.4 22.9 126 389-514 121-263 (293)
121 1a17_A Serine/threonine protei 98.6 2.4E-06 8.3E-11 74.0 17.0 130 139-274 14-145 (166)
122 4gco_A Protein STI-1; structur 98.6 1.6E-06 5.6E-11 71.7 15.0 109 139-253 14-122 (126)
123 2c2l_A CHIP, carboxy terminus 98.6 4.8E-07 1.6E-11 86.7 13.3 195 312-517 3-199 (281)
124 3u3w_A Transcriptional activat 98.6 1.8E-05 6.1E-10 76.2 24.3 161 318-478 80-262 (293)
125 1na0_A Designed protein CTPR3; 98.6 3.3E-06 1.1E-10 68.9 16.2 116 138-259 9-124 (125)
126 3q7a_A Farnesyltransferase alp 98.5 7E-05 2.4E-09 72.7 27.4 173 151-363 67-257 (349)
127 4gco_A Protein STI-1; structur 98.5 2.7E-06 9.2E-11 70.3 14.4 96 384-481 14-109 (126)
128 1na0_A Designed protein CTPR3; 98.5 4.4E-06 1.5E-10 68.1 15.7 113 383-498 9-121 (125)
129 2qfc_A PLCR protein; TPR, HTH, 98.5 1.4E-05 4.7E-10 77.0 21.4 173 175-375 77-264 (293)
130 3gyz_A Chaperone protein IPGC; 98.5 2.2E-06 7.4E-11 73.3 13.8 103 383-489 36-138 (151)
131 1a17_A Serine/threonine protei 98.5 6.3E-06 2.2E-10 71.3 17.1 95 315-411 15-109 (166)
132 3gyz_A Chaperone protein IPGC; 98.5 1.3E-06 4.6E-11 74.6 12.1 95 175-274 38-132 (151)
133 3q7a_A Farnesyltransferase alp 98.5 0.00011 3.8E-09 71.4 26.9 174 185-398 66-257 (349)
134 2lni_A Stress-induced-phosphop 98.5 3.2E-06 1.1E-10 70.0 14.3 119 136-260 14-132 (133)
135 2c2l_A CHIP, carboxy terminus 98.5 1.7E-06 5.7E-11 82.9 13.9 98 172-274 3-100 (281)
136 2vyi_A SGTA protein; chaperone 98.5 5.6E-06 1.9E-10 68.1 15.1 119 138-262 12-130 (131)
137 3gw4_A Uncharacterized protein 98.4 3.1E-06 1.1E-10 76.2 14.1 157 324-481 3-175 (203)
138 1p5q_A FKBP52, FK506-binding p 98.4 5.1E-06 1.7E-10 81.8 16.7 133 137-274 146-293 (336)
139 2vyi_A SGTA protein; chaperone 98.4 4.7E-06 1.6E-10 68.6 13.9 117 384-503 13-129 (131)
140 2vgx_A Chaperone SYCD; alterna 98.4 1.4E-06 4.9E-11 74.4 10.5 97 173-274 21-117 (148)
141 2lni_A Stress-induced-phosphop 98.4 4.5E-06 1.6E-10 69.1 13.4 116 382-501 15-131 (133)
142 2e2e_A Formate-dependent nitri 98.4 2.1E-06 7.1E-11 75.7 11.5 118 361-481 23-143 (177)
143 3gw4_A Uncharacterized protein 98.4 3.6E-06 1.2E-10 75.8 13.0 158 115-274 5-175 (203)
144 4f3v_A ESX-1 secretion system 98.4 9E-06 3.1E-10 76.4 15.6 139 350-493 104-246 (282)
145 2e2e_A Formate-dependent nitri 98.3 5.2E-06 1.8E-10 73.1 13.0 120 150-275 22-144 (177)
146 2vgx_A Chaperone SYCD; alterna 98.3 1.6E-06 5.4E-11 74.1 8.9 97 383-481 21-117 (148)
147 3upv_A Heat shock protein STI1 98.3 1.2E-05 4.1E-10 66.2 13.8 96 384-481 5-100 (126)
148 1p5q_A FKBP52, FK506-binding p 98.3 1.5E-05 5.2E-10 78.4 16.7 94 384-479 197-291 (336)
149 4f3v_A ESX-1 secretion system 98.3 1.5E-05 5E-10 74.9 15.5 190 325-520 18-240 (282)
150 4gcn_A Protein STI-1; structur 98.3 1.3E-05 4.5E-10 66.2 13.5 107 384-493 9-121 (127)
151 1elw_A TPR1-domain of HOP; HOP 98.3 3E-05 1E-09 62.3 15.5 97 383-481 4-100 (118)
152 3dss_A Geranylgeranyl transfer 98.3 0.00012 4.1E-09 70.7 21.7 181 329-516 90-303 (331)
153 3dss_A Geranylgeranyl transfer 98.3 0.00074 2.5E-08 65.2 27.2 120 150-275 41-174 (331)
154 1elw_A TPR1-domain of HOP; HOP 98.3 3.6E-05 1.2E-09 61.8 15.6 96 139-236 5-100 (118)
155 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.8E-10 66.3 12.2 111 384-497 5-121 (131)
156 2fbn_A 70 kDa peptidylprolyl i 98.2 2.5E-05 8.6E-10 70.1 15.3 131 139-274 39-185 (198)
157 3upv_A Heat shock protein STI1 98.2 2.2E-05 7.5E-10 64.5 13.2 95 175-274 6-100 (126)
158 4gcn_A Protein STI-1; structur 98.2 2.5E-05 8.7E-10 64.5 13.5 96 140-236 10-111 (127)
159 3sz7_A HSC70 cochaperone (SGT) 98.2 2.5E-05 8.5E-10 67.7 13.9 99 138-238 11-109 (164)
160 2xcb_A PCRH, regulatory protei 98.2 1.5E-05 5.1E-10 67.3 12.0 97 139-237 19-115 (142)
161 3q49_B STIP1 homology and U bo 98.2 2.9E-05 9.8E-10 64.7 13.5 100 136-237 7-106 (137)
162 2xcb_A PCRH, regulatory protei 98.2 2.4E-05 8.3E-10 66.0 13.1 99 172-275 17-115 (142)
163 2dba_A Smooth muscle cell asso 98.2 6E-05 2.1E-09 63.5 15.7 99 136-237 26-128 (148)
164 3q49_B STIP1 homology and U bo 98.2 4.9E-05 1.7E-09 63.3 14.7 100 171-275 7-106 (137)
165 2dba_A Smooth muscle cell asso 98.2 7.4E-05 2.5E-09 62.9 15.9 97 382-481 27-127 (148)
166 3sz7_A HSC70 cochaperone (SGT) 98.1 4.1E-05 1.4E-09 66.3 14.1 99 172-275 10-108 (164)
167 2kck_A TPR repeat; tetratricop 98.1 1.6E-05 5.6E-10 63.3 10.5 98 138-236 6-105 (112)
168 2fbn_A 70 kDa peptidylprolyl i 98.1 5.1E-05 1.7E-09 68.1 14.8 94 419-514 89-183 (198)
169 2kck_A TPR repeat; tetratricop 98.1 1.9E-05 6.4E-10 62.9 10.6 95 385-481 8-105 (112)
170 1elr_A TPR2A-domain of HOP; HO 98.1 2.8E-05 9.4E-10 63.9 11.8 110 139-254 5-120 (131)
171 1hxi_A PEX5, peroxisome target 98.0 4.4E-05 1.5E-09 62.4 11.5 94 141-236 20-113 (121)
172 1hxi_A PEX5, peroxisome target 98.0 4.5E-05 1.5E-09 62.3 11.5 95 176-275 20-114 (121)
173 3ro3_A PINS homolog, G-protein 98.0 3.4E-05 1.2E-09 66.0 10.4 136 139-274 10-157 (164)
174 4b4t_Q 26S proteasome regulato 98.0 0.00045 1.5E-08 70.2 20.3 194 321-514 12-242 (434)
175 2xev_A YBGF; tetratricopeptide 98.0 0.0002 6.9E-09 58.7 14.6 96 141-237 5-105 (129)
176 3ro3_A PINS homolog, G-protein 98.0 5.8E-05 2E-09 64.5 11.3 61 420-480 91-156 (164)
177 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00011 3.7E-09 75.6 14.8 131 138-273 268-413 (457)
178 4b4t_Q 26S proteasome regulato 97.9 0.00038 1.3E-08 70.8 18.9 212 253-480 11-243 (434)
179 1wao_1 Serine/threonine protei 97.9 2.8E-05 9.7E-10 80.3 10.0 123 143-271 11-135 (477)
180 3k9i_A BH0479 protein; putativ 97.9 1.5E-05 5.1E-10 64.7 6.3 86 151-237 3-90 (117)
181 1ihg_A Cyclophilin 40; ppiase 97.9 0.00012 4.1E-09 72.8 14.0 122 140-267 225-362 (370)
182 3rkv_A Putative peptidylprolyl 97.9 0.00012 4E-09 63.2 12.2 70 417-489 62-131 (162)
183 1wao_1 Serine/threonine protei 97.9 0.0001 3.5E-09 76.2 13.6 116 113-232 17-134 (477)
184 2xev_A YBGF; tetratricopeptide 97.9 0.00026 9E-09 58.0 13.7 90 389-481 8-104 (129)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00016 5.4E-09 74.3 14.6 95 418-515 317-413 (457)
186 1ihg_A Cyclophilin 40; ppiase 97.9 0.00015 5.3E-09 72.0 13.9 140 348-510 223-363 (370)
187 3rkv_A Putative peptidylprolyl 97.8 0.00015 5.1E-09 62.6 11.1 98 139-237 12-126 (162)
188 3n71_A Histone lysine methyltr 97.8 0.00025 8.6E-09 72.9 13.7 149 203-376 294-463 (490)
189 3k9i_A BH0479 protein; putativ 97.7 4.1E-05 1.4E-09 62.0 6.3 85 396-481 3-89 (117)
190 2if4_A ATFKBP42; FKBP-like, al 97.7 8E-05 2.8E-09 73.2 9.4 129 139-274 180-327 (338)
191 2hr2_A Hypothetical protein; a 97.7 0.00044 1.5E-08 58.6 12.6 99 176-274 14-130 (159)
192 1dce_A Protein (RAB geranylger 97.7 0.0017 5.7E-08 68.4 19.8 174 328-506 44-244 (567)
193 3n71_A Histone lysine methyltr 97.7 0.00019 6.4E-09 73.9 11.2 135 182-341 318-463 (490)
194 1klx_A Cysteine rich protein B 97.7 0.0012 4.2E-08 55.0 14.4 110 363-483 10-127 (138)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 9E-05 3.1E-09 72.8 8.3 150 348-519 179-330 (338)
196 1klx_A Cysteine rich protein B 97.6 0.0018 6E-08 54.1 15.1 110 328-448 10-127 (138)
197 1dce_A Protein (RAB geranylger 97.6 0.0028 9.6E-08 66.7 20.0 173 294-471 45-244 (567)
198 2hr2_A Hypothetical protein; a 97.6 0.00063 2.2E-08 57.6 11.9 98 140-237 13-131 (159)
199 2l6j_A TPR repeat-containing p 97.6 9.4E-05 3.2E-09 58.8 5.7 68 417-487 3-70 (111)
200 2kat_A Uncharacterized protein 97.4 0.00066 2.3E-08 54.4 9.0 79 156-236 3-81 (115)
201 1na3_A Designed protein CTPR2; 97.4 0.0019 6.4E-08 48.8 11.1 61 140-201 11-71 (91)
202 2l6j_A TPR repeat-containing p 97.4 0.00063 2.2E-08 53.8 8.4 61 140-201 6-66 (111)
203 1zu2_A Mitochondrial import re 97.4 0.00045 1.6E-08 58.4 7.4 98 395-497 14-133 (158)
204 1na3_A Designed protein CTPR2; 97.3 0.0026 9E-08 47.9 11.4 84 172-260 8-91 (91)
205 2kat_A Uncharacterized protein 97.3 0.0017 5.8E-08 51.9 10.3 79 121-202 4-82 (115)
206 1zu2_A Mitochondrial import re 97.2 0.0012 4E-08 55.9 8.1 97 114-215 14-131 (158)
207 3ma5_A Tetratricopeptide repea 97.1 0.0017 5.9E-08 50.5 8.3 65 136-201 5-69 (100)
208 3ma5_A Tetratricopeptide repea 97.1 0.002 6.9E-08 50.1 8.0 65 171-236 5-69 (100)
209 3qww_A SET and MYND domain-con 96.9 0.0045 1.5E-07 62.5 10.5 97 220-341 310-410 (433)
210 3qwp_A SET and MYND domain-con 96.8 0.011 3.9E-07 59.5 13.5 103 214-341 293-399 (429)
211 2kc7_A BFR218_protein; tetratr 96.5 0.0051 1.7E-07 47.4 6.2 57 424-481 6-63 (99)
212 3ly7_A Transcriptional activat 96.4 0.041 1.4E-06 53.4 13.3 76 415-494 274-349 (372)
213 2kc7_A BFR218_protein; tetratr 96.4 0.009 3.1E-07 45.9 7.2 62 143-205 5-67 (99)
214 3qww_A SET and MYND domain-con 96.3 0.017 5.7E-07 58.3 10.6 90 185-274 310-410 (433)
215 3qwp_A SET and MYND domain-con 96.3 0.022 7.4E-07 57.5 11.3 61 175-235 331-398 (429)
216 1pc2_A Mitochondria fission pr 96.0 0.072 2.5E-06 44.4 10.8 93 398-494 13-110 (152)
217 3mkq_B Coatomer subunit alpha; 95.8 0.72 2.5E-05 39.4 16.7 129 356-514 13-141 (177)
218 3bee_A Putative YFRE protein; 95.8 0.071 2.4E-06 40.5 9.6 67 136-203 4-73 (93)
219 3mkq_A Coatomer beta'-subunit; 95.8 0.45 1.5E-05 52.3 20.2 45 149-199 663-707 (814)
220 2v5f_A Prolyl 4-hydroxylase su 95.8 0.078 2.7E-06 41.2 10.0 68 136-203 3-76 (104)
221 3ly7_A Transcriptional activat 95.8 0.63 2.2E-05 45.1 18.0 122 154-284 215-346 (372)
222 3mkq_A Coatomer beta'-subunit; 95.7 0.2 6.7E-06 55.2 16.8 103 317-446 633-735 (814)
223 3mkq_B Coatomer subunit alpha; 95.5 0.38 1.3E-05 41.1 13.8 103 145-271 12-114 (177)
224 3bee_A Putative YFRE protein; 95.5 0.25 8.6E-06 37.4 11.5 67 170-237 3-72 (93)
225 1wy6_A Hypothetical protein ST 95.4 0.86 2.9E-05 36.7 15.6 141 218-380 17-157 (172)
226 2v5f_A Prolyl 4-hydroxylase su 95.1 0.2 6.7E-06 38.9 10.1 70 417-488 4-79 (104)
227 1pc2_A Mitochondria fission pr 94.7 0.23 7.8E-06 41.4 9.8 82 154-237 14-100 (152)
228 1wy6_A Hypothetical protein ST 94.5 1.5 5.1E-05 35.3 14.8 62 421-483 94-155 (172)
229 3u64_A Protein TP_0956; tetrat 94.0 0.22 7.6E-06 46.3 9.0 80 155-236 180-268 (301)
230 3u64_A Protein TP_0956; tetrat 93.3 0.58 2E-05 43.5 10.6 83 399-485 179-272 (301)
231 4h7y_A Dual specificity protei 92.9 0.79 2.7E-05 37.7 9.5 104 172-280 12-128 (161)
232 4h7y_A Dual specificity protei 92.6 0.8 2.7E-05 37.7 9.1 112 381-495 11-135 (161)
233 1nzn_A CGI-135 protein, fissio 92.2 0.97 3.3E-05 36.1 9.2 86 399-488 17-107 (126)
234 1nzn_A CGI-135 protein, fissio 91.3 1.3 4.6E-05 35.3 9.0 83 154-237 17-103 (126)
235 4gns_B Protein CSD3, chitin bi 90.3 1 3.4E-05 48.3 9.8 54 460-515 344-398 (754)
236 4gns_B Protein CSD3, chitin bi 88.7 6.3 0.00021 42.3 14.4 126 142-273 252-398 (754)
237 2ff4_A Probable regulatory pro 87.1 4 0.00014 40.2 11.2 70 423-493 176-250 (388)
238 2ff4_A Probable regulatory pro 87.1 2.8 9.7E-05 41.3 10.1 60 316-376 174-233 (388)
239 4fhn_B Nucleoporin NUP120; pro 86.9 25 0.00087 40.1 19.1 67 208-275 899-967 (1139)
240 3ffl_A Anaphase-promoting comp 86.2 2 6.9E-05 36.0 7.0 31 244-274 120-150 (167)
241 3o48_A Mitochondria fission 1 86.0 10 0.00035 30.4 10.7 74 414-489 36-112 (134)
242 4b4t_P 26S proteasome regulato 85.7 31 0.001 34.5 17.8 93 387-479 141-244 (445)
243 1qsa_A Protein (soluble lytic 85.7 37 0.0013 35.5 32.9 271 123-411 57-347 (618)
244 2p58_C Putative type III secre 85.5 9.8 0.00034 28.6 9.7 82 113-203 18-99 (116)
245 2uwj_G Type III export protein 84.4 9.3 0.00032 28.7 8.9 89 113-211 17-105 (115)
246 1v54_E Cytochrome C oxidase po 84.0 9.1 0.00031 28.9 8.8 48 434-481 26-73 (109)
247 4fhn_B Nucleoporin NUP120; pro 83.5 18 0.0006 41.4 15.7 142 354-502 818-985 (1139)
248 1v54_E Cytochrome C oxidase po 82.0 7.7 0.00026 29.3 7.7 63 398-461 25-87 (109)
249 1y8m_A FIS1; mitochondria, unk 80.2 22 0.00076 28.9 12.4 73 415-489 36-111 (144)
250 4b4t_P 26S proteasome regulato 78.1 58 0.002 32.4 22.6 171 248-445 139-322 (445)
251 2y69_E Cytochrome C oxidase su 77.6 17 0.00058 29.2 8.8 59 436-495 71-129 (152)
252 3o48_A Mitochondria fission 1 77.2 19 0.00064 28.9 9.2 68 380-447 37-107 (134)
253 3esl_A Checkpoint serine/threo 77.1 24 0.00083 30.6 10.6 58 431-488 92-150 (202)
254 1zbp_A Hypothetical protein VP 75.3 22 0.00077 32.4 10.4 119 146-275 5-129 (273)
255 2y69_E Cytochrome C oxidase su 74.2 15 0.00052 29.4 7.7 62 399-461 69-130 (152)
256 3ffl_A Anaphase-promoting comp 73.8 18 0.00061 30.3 8.6 121 388-521 25-155 (167)
257 1zbp_A Hypothetical protein VP 71.1 12 0.0004 34.3 7.4 56 181-237 5-60 (273)
258 1qsa_A Protein (soluble lytic 67.8 1.2E+02 0.0042 31.6 25.3 52 428-480 295-346 (618)
259 4b4t_R RPN7, 26S proteasome re 66.6 54 0.0018 32.5 12.2 60 140-199 133-194 (429)
260 4a1g_A Mitotic checkpoint seri 66.2 52 0.0018 27.0 9.8 54 435-488 82-136 (152)
261 1y8m_A FIS1; mitochondria, unk 65.6 53 0.0018 26.6 11.9 68 380-447 36-106 (144)
262 2p58_C Putative type III secre 63.3 46 0.0016 25.1 8.2 77 188-275 22-98 (116)
263 2uwj_G Type III export protein 61.6 44 0.0015 25.1 7.5 77 188-275 21-97 (115)
264 4ady_A RPN2, 26S proteasome re 60.9 2E+02 0.0068 31.7 28.3 186 323-515 384-587 (963)
265 2wvi_A Mitotic checkpoint seri 60.5 74 0.0025 26.5 10.3 56 435-490 77-133 (164)
266 4ady_A RPN2, 26S proteasome re 59.7 2.1E+02 0.0071 31.5 25.1 257 181-445 382-656 (963)
267 4b4t_R RPN7, 26S proteasome re 59.6 60 0.0021 32.1 11.1 62 211-273 134-195 (429)
268 3txn_A 26S proteasome regulato 53.5 1.7E+02 0.0057 28.5 17.6 237 67-303 19-280 (394)
269 2wpv_A GET4, UPF0363 protein Y 46.9 1.9E+02 0.0063 27.1 22.0 46 382-431 133-178 (312)
270 3lpz_A GET4 (YOR164C homolog); 46.1 2E+02 0.0068 27.2 23.6 47 382-432 135-181 (336)
271 3esl_A Checkpoint serine/threo 44.0 1.6E+02 0.0054 25.5 11.1 56 152-207 93-149 (202)
272 2wvi_A Mitotic checkpoint seri 43.9 1.2E+02 0.0042 25.2 8.6 55 155-209 77-132 (164)
273 4aez_C MAD3, mitotic spindle c 43.3 81 0.0028 27.8 7.7 54 435-488 131-185 (223)
274 3lvg_A Clathrin heavy chain 1; 40.9 2.1 7.2E-05 42.9 -3.0 261 71-369 55-325 (624)
275 4a1g_A Mitotic checkpoint seri 38.9 1.6E+02 0.0055 24.1 9.3 54 155-208 82-136 (152)
276 2qx5_A Nucleoporin NIC96; mRNA 37.8 3.8E+02 0.013 28.1 17.2 42 143-185 157-198 (661)
277 2wpv_A GET4, UPF0363 protein Y 35.9 2.7E+02 0.0094 25.9 20.5 114 140-269 35-157 (312)
278 2nsz_A Programmed cell death p 35.3 1.2E+02 0.004 24.0 7.0 66 141-207 10-77 (129)
279 4gq2_M Nucleoporin NUP120; bet 35.1 3.8E+02 0.013 29.6 13.5 50 210-260 899-950 (950)
280 2xig_A Ferric uptake regulatio 33.8 1.3E+02 0.0046 24.4 7.4 60 163-223 17-76 (150)
281 2ion_A PDCD4, programmed cell 33.5 1.9E+02 0.0063 23.7 8.1 64 351-415 12-77 (152)
282 3mv2_A Coatomer subunit alpha; 32.7 3.1E+02 0.011 25.6 11.4 51 433-483 185-237 (325)
283 3lpz_A GET4 (YOR164C homolog); 32.3 3.3E+02 0.011 25.7 23.2 82 345-445 133-214 (336)
284 4aez_C MAD3, mitotic spindle c 31.3 1.9E+02 0.0065 25.4 8.1 54 155-208 131-185 (223)
285 2nsz_A Programmed cell death p 30.7 2E+02 0.0067 22.7 9.5 64 351-415 10-75 (129)
286 2fe3_A Peroxide operon regulat 30.6 1.3E+02 0.0045 24.2 6.8 59 164-223 13-71 (145)
287 3bge_A Predicted ATPase; struc 30.4 2.6E+02 0.0089 24.0 9.1 33 396-428 20-52 (201)
288 2d2s_A Exocyst complex compone 30.1 2.9E+02 0.01 24.5 9.5 28 417-444 90-117 (235)
289 2r9g_A AAA ATPase, central reg 28.4 2.9E+02 0.0098 23.8 9.6 17 397-413 28-44 (204)
290 1k1a_A B-cell lymphoma 3-encod 28.2 1.2E+02 0.0042 26.3 6.9 181 320-513 13-205 (241)
291 3pvs_A Replication-associated 28.1 4.4E+02 0.015 25.9 13.2 22 396-417 268-289 (447)
292 1mzb_A Ferric uptake regulatio 27.9 1.3E+02 0.0043 24.0 6.1 60 164-224 9-69 (136)
293 2ion_A PDCD4, programmed cell 27.2 1.1E+02 0.0037 25.1 5.7 65 141-206 12-78 (152)
294 4fke_A Aminopeptidase N; zinc 25.5 7E+02 0.024 27.3 15.1 91 351-446 689-786 (909)
295 3ltm_A Alpha-REP4; protein eng 25.3 3.1E+02 0.01 23.1 19.3 17 207-223 63-79 (211)
296 4b4t_S RPN3, 26S proteasome re 25.3 4.7E+02 0.016 26.4 10.8 65 138-202 231-299 (523)
297 3ltj_A Alpharep-4; protein eng 25.2 3E+02 0.01 23.0 18.9 169 311-499 26-194 (201)
298 3eyy_A Putative iron uptake re 25.1 1.3E+02 0.0044 24.3 5.7 58 164-223 10-67 (145)
299 3kae_A CDC27, possible protein 24.7 3.1E+02 0.011 23.1 7.6 69 147-235 71-141 (242)
300 4gq2_M Nucleoporin NUP120; bet 24.4 3.8E+02 0.013 29.6 11.2 88 179-275 816-926 (950)
301 3ltm_A Alpha-REP4; protein eng 24.4 3.2E+02 0.011 23.0 18.3 169 311-499 31-199 (211)
302 2r9g_A AAA ATPase, central reg 24.4 3.4E+02 0.012 23.3 9.4 38 324-362 25-62 (204)
303 3c1d_A Protein ORAA, regulator 24.2 3E+02 0.01 22.5 10.3 51 329-381 46-96 (159)
304 2keb_A DNA polymerase subunit 24.0 2.3E+02 0.0078 21.2 6.6 56 437-494 28-88 (101)
305 2fu4_A Ferric uptake regulatio 23.9 1.9E+02 0.0065 20.2 7.0 60 443-503 7-67 (83)
306 2fu4_A Ferric uptake regulatio 23.1 2E+02 0.0068 20.1 6.5 59 164-223 8-67 (83)
307 2w57_A Ferric uptake regulatio 22.7 1.4E+02 0.0049 24.2 5.6 61 163-224 7-68 (150)
308 3bge_A Predicted ATPase; struc 22.5 3.4E+02 0.012 23.3 7.8 39 324-362 18-56 (201)
309 3kae_A CDC27, possible protein 20.2 3.9E+02 0.013 22.5 10.6 99 147-275 42-143 (242)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-35 Score=316.98 Aligned_cols=438 Identities=10% Similarity=0.005 Sum_probs=364.1
Q ss_pred cccchhhHHHHHHHHhhhch---HHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHH
Q 007543 66 DEAGKKNWRRLMNQIEEVGS---AVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFL 142 (599)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~---a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 142 (599)
+.+++..|+.++..+.+.|. |..+++.+.. ..+ .+.........+...++++.|.++++.+... +.+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 154 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD-ITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRY 154 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-hCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHH
Confidence 44677899999999887664 5555554321 111 2233334444567788999999999877543 46788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKK---------------GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|+++|++|.+.++. +
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 233 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-C 233 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-h
Confidence 9999999999999999999953322 23346899999999999999999999999999886543 3
Q ss_pred HHHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 007543 208 ALTYQII--------------------------------------LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 249 (599)
Q Consensus 208 ~~t~~~l--------------------------------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 249 (599)
...+..+ +..|.+.|++++|.++|+++.+. +++..++
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 308 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-----EKSSDLL 308 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-----GGCHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-----CchHHHH
Confidence 3443333 44566789999999999999742 5899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007543 250 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 326 (599)
Q Consensus 250 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 326 (599)
+.++.+|.+.|++++|+++|+++.+.+. .+..+++.+... .|++++|.++++.+.+.. +.+..+++.++.+|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh
Confidence 9999999999999999999999997653 255556655554 699999999999998764 45788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 327 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFF 406 (599)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 406 (599)
|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|
T Consensus 387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998864 5678899999999999999999999999998764 458899999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 407 RRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 407 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998765 458999999999999999999999999999865 66787 7899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 481 SCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 481 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.++.
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 854 557889999999999999999999999998765543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-33 Score=298.74 Aligned_cols=398 Identities=10% Similarity=0.021 Sum_probs=343.8
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 106 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185 (599)
Q Consensus 106 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 185 (599)
...+..+...++++.|.++++.+.... ++..++..++.+|.+.|++++|..+|+++... +++..+|+.++.+|.+
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHH
Confidence 344455677899999999999988654 57788899999999999999999999998654 5799999999999999
Q ss_pred cCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 186 GGRYKNAEAIFRRMQSS---------------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~---------------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
.|++++|+++|+++... +..++..+|..++.+|.+.|++++|.++|+++++.+ +.+...+.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~ 238 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD----AKCYEAFD 238 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----chhhHHHH
Confidence 99999999999954222 223358899999999999999999999999998743 22333333
Q ss_pred H--------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--
Q 007543 251 M--------------------------------------MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-- 290 (599)
Q Consensus 251 ~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-- 290 (599)
. ++..|.+.|++++|.++|+++.+. .++..+|+.+...
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 3 356677889999999999998875 4788888887775
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 291 -ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 291 -~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (599)
.|++++|.++|+++.+.+. .+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 6899999999999998763 477889999999999999999999999998764 6788999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 370 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 370 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998753 4468899999999999999999999999999875 4588999999999999999999999999999753
Q ss_pred CcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 450 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC----GFPPD--QKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.++
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 447889999999999999999999999999774 66787 78999999999999999999999999865543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-30 Score=270.95 Aligned_cols=205 Identities=17% Similarity=0.268 Sum_probs=181.8
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 007543 297 VSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM---------VDQ 366 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~ 366 (599)
+..+.+.+.+.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3445566666655544 346888999999999999999999999999999999999999999987664 789
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 367 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 367 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007543 447 NGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTA 501 (599)
Q Consensus 447 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 501 (599)
.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..+...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.4e-29 Score=260.82 Aligned_cols=185 Identities=19% Similarity=0.231 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC------------CHHHHHHHHHHHHHcCCCCCHH
Q 007543 247 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET------------NYKEVSKIYDQMQRAGLQPDVV 314 (599)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~------------~~~~a~~~~~~m~~~g~~~~~~ 314 (599)
.+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.++. ..++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3566777777777777777777777777777777777777776532 3678899999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 394 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 394 (599)
||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
+.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.7e-25 Score=227.98 Aligned_cols=355 Identities=14% Similarity=0.105 Sum_probs=215.3
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
-..++++.|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34567777777777666554 3455666677777778888888888887777653 34677788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 193 EAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
++.|+++.+..+. +..+|..+..++.+.|++++|.+.|+++++.. +.+...+..+...+...|++++|.+.|+++
T Consensus 87 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888887765322 45567777788888888888888888777542 334556677777777778888888888777
Q ss_pred HHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007543 273 AERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK 349 (599)
Q Consensus 273 ~~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (599)
.+... .+..+|..+.. ..|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.. +.+..
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 66421 12233333222 2455555555555555543 2234455555555555555555555555555443 33455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
++..+...|.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 55555555555566666665555555432 2234455555555555556666655555555442 335555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|...++++.+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555656655555555431 22344555555555555566666555555554
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.3e-24 Score=221.34 Aligned_cols=342 Identities=12% Similarity=0.099 Sum_probs=292.4
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 191 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 191 (599)
+...++++.|...++.+.+.. +.+...|..+...|.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 456788999999998888765 5678899999999999999999999999998864 3367789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 192 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 192 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
|++.|+++.+..+. +...+..+...+...|++++|.+.|+++++.. +.+..+|+.+...|.+.|++++|...|++
T Consensus 120 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 120 AVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ----PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999886543 55677888889999999999999999998753 55688999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHh---cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007543 272 MAERGVQQSTVTYNSLM---SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 348 (599)
Q Consensus 272 m~~~g~~~~~~~~~~ll---~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 348 (599)
+.+.+. .+...|..+- ...+++++|...+++..... +.+..++..+...|.+.|++++|+..|+++.+.+ +.+.
T Consensus 195 al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 271 (388)
T 1w3b_A 195 AVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFP 271 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCH
T ss_pred HHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH
Confidence 988642 1233343332 34689999999999998864 3367889999999999999999999999999875 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007543 349 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 428 (599)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 428 (599)
.+|..+...+.+.|++++|...|+++.+.. +.+..+++.+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 899999999999999999999999998763 6688999999999999999999999999998864 45788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCC
Q 007543 429 AKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKD 468 (599)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 468 (599)
.+.|++++|.+.|+++.+. .|+ ...|..+...+...|+
T Consensus 350 ~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999964 454 6688888777766553
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=7.4e-22 Score=205.09 Aligned_cols=327 Identities=11% Similarity=0.083 Sum_probs=255.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
.+...+..+...|.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.++. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 456678889999999999999999999998763 347889999999999999999999999999887543 678899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ---KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 292 (599)
.+|.+.|++++|.+.|+++++.. +.+. ..+..++..+...+.+..|...+ ..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------------------~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN----PSENEEKEAQSQLIKSDEMQRLRSQALNAF--------------------GSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHH--------------------HcC
Confidence 99999999999999999998532 3334 56666655532222222222111 124
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
++++|...++.+.+.. +.+...+..+..+|.+.|++++|+.+|+++.+.. +.+..++..+...|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444555555544432 3467888999999999999999999999998764 5678899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 007543 373 CMRRDRCSPDICSYTTM------------LSAYVNASDMEGAEKFFRRLKQDGFVPN-----VITYGTLIKGYAKVNNLE 435 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~ 435 (599)
++.+.. +.+...+..+ ...|.+.|++++|...|+++.+.. |+ ..+|..+...+.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHH
Confidence 998652 3344455444 788999999999999999998753 44 457889999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 007543 436 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLS 496 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 496 (599)
+|.+.++++.+.. +.+..+|..+..+|...|++++|...++++.+ +.|+ ...+..+..
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 9999999998652 34688999999999999999999999999998 4565 455555553
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=9.3e-21 Score=196.76 Aligned_cols=325 Identities=12% Similarity=0.097 Sum_probs=262.5
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 108 TLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 187 (599)
Q Consensus 108 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 187 (599)
....+...++++.|.++++.+.+.. +.+...+..+..+|.+.|++++|...|+++.+.+. .+..+|..+...|.+.|
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Confidence 3344566789999999999888764 46788899999999999999999999999998753 37889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPRPSA---LTYQII------------LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM 252 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p~~---~t~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 252 (599)
++++|.+.|+++.+..+. +. ..+..+ ...+...|++++|...|+++++.. +.+..++..+
T Consensus 109 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l 183 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VWDAELRELR 183 (450)
T ss_dssp CHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHH
Confidence 999999999999886432 33 455555 344888999999999999998643 5678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
+.+|.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK---------------------------------NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH---------------------------------CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998887531 34677888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHh
Q 007543 333 LAVFEEMLDAGVRPTHKAYNIL------------LDAFAISGMVDQARTVFKCMRRDRCSPD-----ICSYTTMLSAYVN 395 (599)
Q Consensus 333 ~~~~~~m~~~g~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~ 395 (599)
+..|+++.+.. +.+...+..+ ...|.+.|++++|...|+++.+. .|+ ...+..+...+.+
T Consensus 231 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 231 LSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHH
Confidence 99999998764 4455555554 78899999999999999999875 344 4478888899999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHH------------
Q 007543 396 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDA------------ 462 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~------------ 462 (599)
.|++++|...++++.+.. +.+..+|..+..+|...|++++|.+.|+++.+. .|+ ...+..+..+
T Consensus 308 ~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhH
Confidence 999999999999988754 447889999999999999999999999999864 454 5566666532
Q ss_pred HHhcC-----CHhHHHHHHHHH
Q 007543 463 YGKNK-----DFDSAVVWYKEM 479 (599)
Q Consensus 463 ~~~~g-----~~~~A~~~~~~m 479 (599)
|...| +.+++.+.++++
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHhCCCccCCHHHHHHHHHHH
Confidence 33444 567778888874
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.8e-22 Score=208.89 Aligned_cols=399 Identities=13% Similarity=0.076 Sum_probs=281.4
Q ss_pred HHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 110 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 189 (599)
Q Consensus 110 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 189 (599)
..+...++++.|.+.++.+.... ++...+..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 34556788999999998888765 478888889999999999999999999888765 33678888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh----------------------------------H
Q 007543 190 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL----------------------------------L 235 (599)
Q Consensus 190 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~----------------------------------~ 235 (599)
++|+..|+++...++. +......++..+........+.+.+..+ .
T Consensus 90 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 9999999998887543 3333333333333322222222111100 0
Q ss_pred hccCC-------CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCCCCCH--------HHHHHHh---c
Q 007543 236 DEEKS-------PLKPDQKMFHMMIYMYKK---AGGYEKARKLFALMAE-----RGVQQST--------VTYNSLM---S 289 (599)
Q Consensus 236 ~~~~~-------~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~~~~--------~~~~~ll---~ 289 (599)
..... .-+.+...+..+...+.. .|++++|...|+++.+ ....|+. ..+..+. .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00000 001123444444444444 7888888888888877 3212221 1222222 1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 290 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 290 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (599)
..|++++|...++.+.+... +...+..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 36888888888888887653 37778888888888899999998888887764 4567788888888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 370 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 370 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
.|+++.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+...
T Consensus 326 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 888887753 3356778888888888899999999888887653 33567788888888888999999988888875310
Q ss_pred -CcC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 450 -KPN----QTIFTTIMDAYGK---NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 450 -~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
.++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..+
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 111 3378888888888 889999999888887742 44566777888888888999999888888765444
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.4e-20 Score=198.90 Aligned_cols=406 Identities=11% Similarity=-0.011 Sum_probs=297.6
Q ss_pred hHHHHHHHHhhh---chHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q 007543 72 NWRRLMNQIEEV---GSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAY 148 (599)
Q Consensus 72 ~~~~~~~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 148 (599)
.|...-..+.+. ..|...++...... + .+.........+...++++.|.+.++.+.+.. +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK-E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 344444444444 46666666433322 2 23333444445667899999999999988875 56778899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------CC----
Q 007543 149 GKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG-------------------PR---- 205 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------~~---- 205 (599)
.+.|++++|...|+++...+. ++......++..+........+.+.+..+...+ ..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998753 344444455554444333333333222111100 00
Q ss_pred --------------------C-CHHHHHHHHHHHHH---cCCHHHHHHHHHHhHh-----ccCCCC-----CCCHHHHHH
Q 007543 206 --------------------P-SALTYQIILKLFVE---ANKFKEAEEVFMTLLD-----EEKSPL-----KPDQKMFHM 251 (599)
Q Consensus 206 --------------------p-~~~t~~~ll~~~~~---~g~~~~A~~~~~~~~~-----~~~~~~-----~~~~~~~~~ 251 (599)
| +...+......+.. .|++++|...|+++++ ....+- +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1 13344444444444 7999999999999986 210100 234567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR 328 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 328 (599)
+...+...|++++|...|+++.+.... ...+..+.. ..+++++|...++.+.+.. +.+...+..+...|...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999876533 444444433 3688999999999998864 3467789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 329 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 408 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (599)
+++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998875 5567889999999999999999999999988753 34678899999999999999999999999
Q ss_pred HhhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 409 LKQDGFV-PN----VITYGTLIKGYAK---VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 409 m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+.+.... ++ ..++..+...+.. .|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8764211 12 4488899999999 999999999999998753 3457789999999999999999999999999
Q ss_pred hCCCCCCHHH
Q 007543 481 SCGFPPDQKA 490 (599)
Q Consensus 481 ~~g~~p~~~~ 490 (599)
+ +.|+...
T Consensus 477 ~--~~~~~~~ 484 (514)
T 2gw1_A 477 D--LARTMEE 484 (514)
T ss_dssp H--HCSSHHH
T ss_pred H--hccccHH
Confidence 8 5666543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.8e-19 Score=191.51 Aligned_cols=389 Identities=13% Similarity=0.114 Sum_probs=190.0
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 191 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 191 (599)
+...++++.|.+.++.+.... +.+...+..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|...|++++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 445566777777777776654 4556677777777777777777777777777654 2356777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc---C-----------------------------
Q 007543 192 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE---K----------------------------- 239 (599)
Q Consensus 192 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~----------------------------- 239 (599)
|+..|+.+ ...+.+.. ..+..+...+....|...++.++... .
T Consensus 112 A~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 77777533 21111111 11222223333344444444443210 0
Q ss_pred CCCCCCH-HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHH-------HHH---HhcccCCHHHHHHH
Q 007543 240 SPLKPDQ-KMFHMMIYMYKK--------AGGYEKARKLFALMAERGVQQSTVT-------YNS---LMSFETNYKEVSKI 300 (599)
Q Consensus 240 ~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~~~-------~~~---ll~~~~~~~~a~~~ 300 (599)
....+.. .....+...+.. .|++++|..+|+++.+.... +... +.. +....+++++|...
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 0000110 022222222211 13555555555555543211 1111 111 01113455555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007543 301 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380 (599)
Q Consensus 301 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 380 (599)
++...+.. |+...+..+...|...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +
T Consensus 266 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 266 LQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 55555542 334455555555555555555555555555443 3345555555555555555555555555555432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHH
Q 007543 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-----IKPNQTI 455 (599)
Q Consensus 381 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~ 455 (599)
.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. .......
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 234455555555555555555555555555432 2234455555555555555555555555554321 0001112
Q ss_pred HHHHHHHHHhc----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 456 FTTIMDAYGKN----------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 456 ~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+......+.+. |++++|...++++.+.. +.+...+..+...+...|++++|...+++..
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22333444444 55555555555555421 2233445555555555555555555555543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.3e-18 Score=174.28 Aligned_cols=317 Identities=10% Similarity=0.060 Sum_probs=241.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|+..|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4556778888889999999999999888764 336888888999999999999999999988876433 66788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLK---PDQKMFHMM------------IYMYKKAGGYEKARKLFALMAERGVQQSTV 282 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 282 (599)
+...|++++|...|+++++.. + .+...+..+ ...+...|++++|...++++.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--------- 147 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL--------- 147 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------
T ss_pred HHHcCChHHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH---------
Confidence 999999999999999887532 2 234444444 345555555555555555544
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007543 283 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 362 (599)
Q Consensus 283 ~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 362 (599)
+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|
T Consensus 148 -----------------------~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 148 -----------------------EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp -----------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred -----------------------HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 332 3466788889999999999999999999998775 667888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHH
Q 007543 363 MVDQARTVFKCMRRDRCSPDICSYT------------TMLSAYVNASDMEGAEKFFRRLKQDGFVPNV----ITYGTLIK 426 (599)
Q Consensus 363 ~~~~A~~~~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~ 426 (599)
++++|...|++..+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 9999999999888753 23333333 2356788999999999999998875422 33 23556788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 007543 427 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAK 499 (599)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 499 (599)
.+.+.|++++|.+.+++..+.. +.+..+|..+...+.+.|++++|...++++.+ +.|+ ...+..+..+..
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 8999999999999999998752 33678999999999999999999999999988 4555 455555555544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=5.3e-18 Score=169.80 Aligned_cols=315 Identities=12% Similarity=0.081 Sum_probs=257.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
++..|..+...+...|++++|+..|+++.+..+. +..++..+...+...|++++|...|+++++.. +.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcchHHHH
Confidence 5678889999999999999999999999886543 78899999999999999999999999998753 457789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC---CH-HHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQ---ST-VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR 327 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~-~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 327 (599)
+...|...|++++|...|+++.+.. | +. ..+..+ ..+. ....+..+...+...|
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l--------------~~~~------~~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQL--------------VKAD------EMQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHH--------------HHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHH--------------HHHH------HHHHHHHHHHHHHHcc
Confidence 9999999999999999999998752 3 11 111111 0000 0123445677899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR 407 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (599)
++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998875 6678899999999999999999999999998763 5578899999999999999999999999
Q ss_pred HHhhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-H----HHHHHHHHHHHhcCCHh
Q 007543 408 RLKQDGFVPNVITYG------------TLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-Q----TIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 408 ~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~ 470 (599)
+..+.. +.+...+. .+...+.+.|++++|.+.++++.+.. |+ . ..+..+...+...|+++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHH
Confidence 998754 23444333 33677899999999999999998653 33 3 23556788999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 471 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 471 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+|...+++..+.. +.+..++..+...+...|++++|...+++..+..+
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999998842 44678899999999999999999999999876654
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.3e-18 Score=184.81 Aligned_cols=365 Identities=13% Similarity=0.065 Sum_probs=283.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.++. +..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 456788999999999999999999999875 348899999999999999999999999999987544 788999999999
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHh----
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER------GVQQSTVTYNSLM---- 288 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~ll---- 288 (599)
...|++++|.+.|+.+. . .|+ ..+..+..+...+...+|...++++... ...|+.......+
T Consensus 104 ~~~g~~~~A~~~~~~~~-~-----~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-L-----NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHcCCHHHHHHHHHHHh-c-----CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999997442 1 222 2233355566667778888888887542 1223332222111
Q ss_pred -------------------------c------------ccCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHH
Q 007543 289 -------------------------S------------FETNYKEVSKIYDQMQRAGLQPD-------VVSYALLINAYG 324 (599)
Q Consensus 289 -------------------------~------------~~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~ 324 (599)
. ..+++++|..+++.+.+.... + ..++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 1 123678899999998876422 2 235777778899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEK 404 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 404 (599)
..|++++|...|+++.+. .|+..++..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999886 4668889999999999999999999999998754 4468889999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-
Q 007543 405 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG- 483 (599)
Q Consensus 405 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 483 (599)
.++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998765 3367889999999999999999999999998753 4457789999999999999999999999987521
Q ss_pred ----CCCCHHHHHHHHHHHhhc----------CcHHHHHHHHHhccCCCC
Q 007543 484 ----FPPDQKAKNILLSLAKTA----------DERNEANELLGNFNHPNN 519 (599)
Q Consensus 484 ----~~p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~ 519 (599)
.......+..+..++... |++++|...+++..+..+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 111122344445667777 999999999999765444
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.9e-18 Score=168.78 Aligned_cols=298 Identities=11% Similarity=-0.002 Sum_probs=147.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 33444555555555555555555555555442 123444444555555555555555555555543222 3444555555
Q ss_pred HHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 007543 217 LFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 295 (599)
Q Consensus 217 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 295 (599)
.+...| ++++|.+.|+++++.. +.+...+..+...+...|++++|...|+++.+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------- 155 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE----KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------------------- 155 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC----TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------------------
Confidence 555555 5555555555554321 2234445555555555555555555555444321
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
+.+...+..+...|...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..
T Consensus 156 --------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 156 --------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp --------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1123334445555555555555555555554432 3334444444444444455555544444443
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 007543 376 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 376 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
+..... + .....+.+..++..+...|.+.|++++|.+.|++..+.. +.+...
T Consensus 221 ~~~~~~---------------~------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~ 272 (330)
T 3hym_B 221 EKIKAI---------------G------------NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNAST 272 (330)
T ss_dssp HHHTTT---------------S------------CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHH
T ss_pred HHhhhc---------------c------------ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHH
Confidence 310000 0 000012234556666666666666666666666666432 223556
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCc
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA-KTADE 503 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~ 503 (599)
|..+...+.+.|++++|.+.++++.+.. +.+...+..+..++ ...|+
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 6666666666666666666666666521 22344455555544 33443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=8.8e-18 Score=166.24 Aligned_cols=288 Identities=11% Similarity=-0.007 Sum_probs=225.4
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 103 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEA 182 (599)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 182 (599)
+..+.....+...++++.|.++++.+.+.. +.+...+..++.++.+.|++++|..+|+++.+.. +.+...|..+...
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 444555555666799999999999988776 4556677788899999999999999999999864 3378899999999
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 183 YGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 183 ~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
+...| ++++|.+.|++..+..+. +...+..+...+...|++++|.+.|+++++.. +.+...+..+...|...|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCSHHHHHHHHHHHHTTC
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhh
Confidence 99999 999999999999987543 67789999999999999999999999998753 4456778889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++|...|++..+.. +.+...+..+...|.+.|++++|...+++..+
T Consensus 175 ~~~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 175 SKLAERFFSQALSIA---------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999998887641 34678899999999999999999999999876
Q ss_pred CC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007543 342 AG--------VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 342 ~g--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 413 (599)
.. .+....++..+...|...|++++|...|++..+.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 42 12335677777777888888888888887776643 3355666667777777777777777777766543
Q ss_pred CCCCHHHHHHHHHHH-HhcCC
Q 007543 414 FVPNVITYGTLIKGY-AKVNN 433 (599)
Q Consensus 414 ~~p~~~~~~~li~~~-~~~g~ 433 (599)
+.+...+..+..++ ...|+
T Consensus 301 -p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 301 -RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp -SCCHHHHHHHHHHHHTTTTC
T ss_pred -CCchHHHHHHHHHHHHHhCc
Confidence 23555666666655 33444
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=3.2e-15 Score=156.93 Aligned_cols=333 Identities=14% Similarity=0.149 Sum_probs=182.8
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----G 186 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 186 (599)
.++.+.|.+.++...+.+ ++..+..|...|.. .+++++|.+.|++..+.| +..++..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 345556666655555442 34555556666666 666666666666666553 55556666666655 5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----
Q 007543 187 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK---- 258 (599)
Q Consensus 187 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 258 (599)
+++++|+..|++..+.| +...+..+...|.. .++.++|.+.|++..+. .+...+..|...|..
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCC
Confidence 56666666666665544 44555555555555 55666666666666542 245555666666655
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHh---c----ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 007543 259 AGGYEKARKLFALMAERGVQQSTVTYNSLM---S----FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----AR 327 (599)
Q Consensus 259 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll---~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g 327 (599)
.++.++|.+.|++..+.|. ...+..+- . ..+++++|...|+...+.| +...+..+...|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 5666666666666655432 22221111 1 1345556666666555543 34444455555555 55
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS-----GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS---DM 399 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~ 399 (599)
+.++|+..|++..+.| +...+..+...|... ++.++|...|++..+.+ +...+..+...|...| +.
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 5666666666655433 344455555555554 56666666666555543 3445555555555544 55
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhH
Q 007543 400 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDS 471 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 471 (599)
++|.+.|++..+.+ +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.+ .+++++
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 55666666555542 44555555555555 556666666666655543 34455555555555 556666
Q ss_pred HHHHHHHHHh
Q 007543 472 AVVWYKEMES 481 (599)
Q Consensus 472 A~~~~~~m~~ 481 (599)
|..+|++..+
T Consensus 422 A~~~~~~A~~ 431 (490)
T 2xm6_A 422 AWAWFDTAST 431 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666555
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.1e-15 Score=157.01 Aligned_cols=344 Identities=16% Similarity=0.142 Sum_probs=147.3
Q ss_pred HhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 007543 139 MDFLMLITAYGK----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----GGRYKNAEAIFRRMQSSGPRPSALT 210 (599)
Q Consensus 139 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 210 (599)
..+..|...|.. .+++++|...|++..+.| +..++..|...|.. .+++++|++.|++..+.| +...
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 333444444444 444444444444444432 34444444444444 444444444444444432 3333
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHH
Q 007543 211 YQIILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQSTV 282 (599)
Q Consensus 211 ~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~ 282 (599)
+..|...|.. .+++++|.+.|++..+. -+...+..|...|.. .+++++|.+.|++..+.| +..
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4444444444 44444444444444431 133344444444444 444444444444444432 111
Q ss_pred HHHHHhc---c----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007543 283 TYNSLMS---F----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAY 351 (599)
Q Consensus 283 ~~~~ll~---~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (599)
.+..+-. . .+++++|.+.|+...+.| +...+..+...|.. .+++++|..+|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 1111111 0 234444444444444432 33344444444443 444444444444444332 23333
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007543 352 NILLDAFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA-----SDMEGAEKFFRRLKQDGFVPNVITYG 422 (599)
Q Consensus 352 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~ 422 (599)
..+...|.. .++.++|...|++..+.+ +...+..+...|... ++.++|...|++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 344444444 444444444444444332 333444444444443 44444444444444432 233344
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 423 TLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 423 ~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
.+...|.+.| ++++|.+.|++..+.+ +...+..+...|.. .+++++|..++++..+.| +...+..|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4444444433 4444444444444432 33444444444444 444444444444444432 233344444
Q ss_pred HHHhh----cCcHHHHHHHHHhcc
Q 007543 496 SLAKT----ADERNEANELLGNFN 515 (599)
Q Consensus 496 ~~~~~----~g~~~~A~~~~~~~~ 515 (599)
..+.. .++.++|...+++..
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHH
Confidence 44443 444444444444433
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=5.3e-18 Score=170.84 Aligned_cols=263 Identities=8% Similarity=-0.024 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 007543 210 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 289 (599)
Q Consensus 210 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 289 (599)
.+..+...+...|++++|...|+++++.. +.+..++..+...|.+.|++++|+..|+++.+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 128 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENEQELLAISALRRCLELK------------- 128 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------------
Confidence 34444555555555555555555555432 3344455555555555555555555555544321
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---------------HH
Q 007543 290 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYN---------------IL 354 (599)
Q Consensus 290 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---------------~l 354 (599)
+.+..++..+...|...|++++|...++++.+.. +.+...+. ..
T Consensus 129 --------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 129 --------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CT
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHH
Confidence 1234445555555555555555555555554432 11111111 02
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 355 LDAFAISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN 433 (599)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (599)
+..+...|++++|...|+++.+.... ++..++..+...|...|++++|...|+++.+.. +.+..++..+...|.+.|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 33333778888888888888765311 147788888888888888888888888887654 3467788888888888899
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhhcC
Q 007543 434 LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-----------QKAKNILLSLAKTAD 502 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g 502 (599)
+++|.+.|+++.+.. +.+...|..+..+|.+.|++++|...++++.+.. +.+ ..+|..+..++...|
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 999999888887642 3457788888888889999999998888886621 111 567888888899999
Q ss_pred cHHHHHHHHHh
Q 007543 503 ERNEANELLGN 513 (599)
Q Consensus 503 ~~~~A~~~~~~ 513 (599)
+.++|..++++
T Consensus 345 ~~~~A~~~~~~ 355 (368)
T 1fch_A 345 QSDAYGAADAR 355 (368)
T ss_dssp CGGGHHHHHTT
T ss_pred ChHhHHHhHHH
Confidence 99998888765
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.3e-17 Score=167.86 Aligned_cols=306 Identities=12% Similarity=-0.006 Sum_probs=222.6
Q ss_pred HHHhcCChHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 147 AYGKQGDFNKAEK-VLSFMNKKGYA---PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 147 ~~~~~g~~~~A~~-~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
++.-.|++++|.. .|++....... .+...|..+...+.+.|++++|+..|+++.+..+. +..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 3444578888888 77765543211 13456788888999999999999999999887543 7778888889999999
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 302 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~ 302 (599)
++++|.+.|+++++.. +.+..++..+...|...|++++|...|+++.+...... ..+..+ +...
T Consensus 113 ~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~----~~~~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELK----PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPA----EEGA------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC-----------------
T ss_pred CHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH----HHHh-------
Confidence 9999999999988653 55778889999999999999999999998887532111 100000 0000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007543 303 QMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP--THKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380 (599)
Q Consensus 303 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 380 (599)
.. ..+ ...+..+.. +...|++++|...|+++.+.. +. +..++..+...|.+.|++++|...|+++.+.. +
T Consensus 177 ---~~-~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 177 ---GG-AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp --------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred ---hh-hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 00 001 111222333 338899999999999998764 23 58889999999999999999999999988753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--------
Q 007543 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-------- 452 (599)
Q Consensus 381 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------- 452 (599)
.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~ 326 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGG 326 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCcccccc
Confidence 467889999999999999999999999988764 4478889999999999999999999999988532 111
Q ss_pred ---HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 453 ---QTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 453 ---~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
..+|..+..+|...|++++|..++++.
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 578999999999999999999887644
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=6.6e-18 Score=170.13 Aligned_cols=265 Identities=8% Similarity=-0.048 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 287 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 287 (599)
...+..+...+.+.|++++|.+.|+++++.. +.+..++..+...|.+.|++++|+..|+++.+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 129 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ----------- 129 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence 3345566666666677777777776666532 4456666667777777777777776666665431
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHH
Q 007543 288 MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR---------PTHKAYNILLDAF 358 (599)
Q Consensus 288 l~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------~~~~~~~~li~~~ 358 (599)
+.+..++..+...|.+.|++++|+..|+++.+.... .....+..+...+
T Consensus 130 ----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 130 ----------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred ----------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 224556666666777777777777777766554200 0122334457778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 359 AISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 437 (599)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 437 (599)
...|++++|...|+++.+.... ++..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888775311 157788888888888899999999888888764 44788899999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHhhcCcH
Q 007543 438 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-------------DQKAKNILLSLAKTADER 504 (599)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~~~~~ll~~~~~~g~~ 504 (599)
.+.|+++.+.. +.+..+|..+..+|.+.|++++|...++++.+. .| +..+|..+..++...|+.
T Consensus 267 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 267 VEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 99999988652 334778899999999999999999999988762 22 246788899999999999
Q ss_pred HHHHHHHHh
Q 007543 505 NEANELLGN 513 (599)
Q Consensus 505 ~~A~~~~~~ 513 (599)
+.+....++
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999988876
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=4.9e-15 Score=157.09 Aligned_cols=403 Identities=11% Similarity=0.090 Sum_probs=296.5
Q ss_pred ChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 101 PKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM 180 (599)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 180 (599)
........+. +...++.+.|..+++.+.+.. |.+...|..++..+.+.|++++|.++|++.... .|++..|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 3344444443 456789999999999998764 677888999999999999999999999999987 46888888888
Q ss_pred HHH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHhHhccCCCCCC
Q 007543 181 EAY-GRGGRYKNAEA----IFRRMQS-SGPRP-SALTYQIILKLFVE---------ANKFKEAEEVFMTLLDEEKSPLKP 244 (599)
Q Consensus 181 ~~~-~~~g~~~~A~~----l~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~ 244 (599)
... ...|++++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.++. +...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 643 45677776665 7777654 35444 56788888887765 78999999999999852 1112
Q ss_pred CHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHhccc---
Q 007543 245 DQKMFHMMIYMYK-------------KAGGYEKARKLFALMA------ERG---VQQS--------TVTYNSLMSFE--- 291 (599)
Q Consensus 245 ~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~--- 291 (599)
....|........ +.+++..|..++.++. +.. +.|+ ...|...+...
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 2344544333211 2456777887777632 111 2333 23455444321
Q ss_pred ----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHH
Q 007543 292 ----TNY----KEVSKIYDQMQRAGLQPDVVSYALLINAYGK-------ARREE-------EALAVFEEMLDAGVRPTHK 349 (599)
Q Consensus 292 ----~~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~ 349 (599)
++. +++..+|++..... +.+...|..++..+.+ .|+++ +|..+|++.++.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 46778898888763 3467888888888875 78876 8999999998632355688
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-I-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 427 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 427 (599)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+.++|.++|++..+.. +.+...|...+..
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 9999999999999999999999999985 454 3 588889999999999999999999998763 2233334333322
Q ss_pred -HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCc
Q 007543 428 -YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPPD--QKAKNILLSLAKTADE 503 (599)
Q Consensus 428 -~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~ 503 (599)
+...|+.++|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 346899999999999988652 3357899999999999999999999999998853 2332 3478888888889999
Q ss_pred HHHHHHHHHhccC
Q 007543 504 RNEANELLGNFNH 516 (599)
Q Consensus 504 ~~~A~~~~~~~~~ 516 (599)
.+.+..+.+++.+
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888653
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=6.1e-17 Score=163.06 Aligned_cols=276 Identities=10% Similarity=-0.018 Sum_probs=199.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...|..+...+.+.|++++|+++|+++.+..+. +..++..+...+...|++++|.+.|+++++.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ----PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHH
Confidence 3445667777777777777777777777665433 56677777777777777777777777777543 445677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 331 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (599)
+...|...|++++|+..|+++.+.. |+.... +.. .......+..+...+.+.|++++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----------------~~~-----~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN--PKYKYL----------------VKN-----KKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----------------------------------------CCHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC--ccchHH----------------Hhh-----hccchHHHHHHHHHHhhhhhHHH
Confidence 8888888888888888888776531 110000 000 00123445667788899999999
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 332 ALAVFEEMLDAGVRP--THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 332 A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (599)
|+.+|+++.+.. +. +..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++
T Consensus 196 A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 196 VKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998875 33 68899999999999999999999999988753 456889999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCc--------CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 410 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG---IKP--------NQTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. ..+ +..+|..+..++...|+.+.+.++.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8764 3468889999999999999999999999988531 010 256899999999999999988877665
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1e-15 Score=151.08 Aligned_cols=277 Identities=10% Similarity=0.006 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 253 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 253 (599)
..|..+...+...|++++|+.+|+++.+..+. +..++..+...+...|++++|.+.|+++++.. +.+..++..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----cCCHHHHHHHH
Confidence 34555666666667777777777666665332 55566666666666666666666666666432 34555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 254 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEAL 333 (599)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (599)
..|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~----------- 132 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ---------------------------------PQYEQLGSVNLQA----------- 132 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS---------------------------------TTTTTC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---------------------------------CccHHHHHHHhHH-----------
Confidence 66666666666666666555431 0011111111000
Q ss_pred HHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 334 AVFEEMLDAGVRPTHKAYNIL-LD-AFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
.|+......+ .. .+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+
T Consensus 133 -----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 133 -----------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0011111111 11 2556677777777777776643 33667777777778888888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----
Q 007543 412 DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD---- 487 (599)
Q Consensus 412 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---- 487 (599)
.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.++++.+ ..|+
T Consensus 201 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~ 276 (327)
T 3cv0_A 201 LR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY--MQVGGTTP 276 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTSCC-
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccccc
Confidence 54 3467778888888888888888888888887643 33567888888888888999999888888876 3344
Q ss_pred ---------HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 488 ---------QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 488 ---------~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
...+..+..++...|+.++|..++++..
T Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 277 TGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5677788888889999999988887643
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.7e-15 Score=149.43 Aligned_cols=97 Identities=7% Similarity=-0.057 Sum_probs=86.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+...|++++|..+|+++.+.. +.+..+|..+...+...|++++|...|+++.+..+ .+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 456788999999999999999999998864 34788999999999999999999999999988743 3788899999999
Q ss_pred HHcCCHHHHHHHHHHhHhc
Q 007543 219 VEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~ 237 (599)
...|++++|.+.++++++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS 118 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=181.98 Aligned_cols=128 Identities=11% Similarity=0.185 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLK---QDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 459 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (599)
..|||++|++|++.|++++|.++|.+|. ..|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4577777777777777777777776654 3467788888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 460 MDAYGKNKDF-DSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 460 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
|+++|+.|+. ++|.++|++|.+.|+.||..+|++++..+.+. .+.+.++++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh
Confidence 8888887774 67778888888888888888888777655443 444444444
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=182.07 Aligned_cols=124 Identities=14% Similarity=0.153 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEML---DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 388 (599)
-..||++||++||+.|++++|.++|.+|. ..|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999998875 457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 389 MLSAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 435 (599)
Q Consensus 389 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 435 (599)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 9999999997 5789999999999999999999999988776654333
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.2e-15 Score=148.11 Aligned_cols=258 Identities=10% Similarity=0.094 Sum_probs=146.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
+.....|+++.|+..+++.....+.+.......+.++|...|+++.|...++.. -+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-------~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-------SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-------CChhHHHHHHHHHHHcCCC
Confidence 334456666666666665533222211234445556666666666666544321 2445566666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 261 GYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEML 340 (599)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (599)
+.++|++.++++...+..| -+...+..+...|.+.|++++|++.+++
T Consensus 80 ~~~~A~~~l~~ll~~~~~P-------------------------------~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDV-------------------------------TNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp THHHHHHHHHHHHHSCCCC-------------------------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred cHHHHHHHHHHHHhcccCC-------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 6666666666665432212 1333444555666666666666666655
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007543 341 DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY---TTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 417 (599)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 417 (599)
+.+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~ 199 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPT 199 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCC
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCc
Confidence 3455566666666666666666666666666542 332111 112222333466777777777766553 446
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhCCCCCCH
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS-AVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~ 488 (599)
...++.+..++.+.|++++|.+.|++..+.. +-+..++..++..+...|+.++ +.++++++.+ +.|+.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 6667777777777777777777777766542 2245566666766767777654 4566666666 34544
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-14 Score=150.92 Aligned_cols=364 Identities=12% Similarity=0.008 Sum_probs=245.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK--------GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS----- 202 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 202 (599)
.....|+.|...|...|++++|++.|++..+. ..+....+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999986542 12335789999999999999999999999887642
Q ss_pred C-CC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHc
Q 007543 203 G-PR-PSALTYQIILKLFVEA--NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY---KKAGGYEKARKLFALMAER 275 (599)
Q Consensus 203 g-~~-p~~~t~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~ 275 (599)
+ .. ....++.....++... +++++|.+.|++.++.+ +.+...+..+...+ ...++.++|++.|++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 11 2355666666666654 46899999999998753 44556666665553 4567788899999888775
Q ss_pred CCCCCHHHHHHHh-------cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007543 276 GVQQSTVTYNSLM-------SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 348 (599)
Q Consensus 276 g~~~~~~~~~~ll-------~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 348 (599)
.. .+...+..+- ...+++++|.+.+++..... +.+..++..+...|.+.|++++|+..+++..+.. +.+.
T Consensus 205 ~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 205 NP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp CS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 32 2333333221 12467889999999888765 4467788999999999999999999999998874 5566
Q ss_pred HHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 349 KAYNILLDAFAIS-------------------GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 349 ~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (599)
.++..+...|... +..++|...|++..+.. +.+..++..+...|...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 7777776665432 23567777787776643 334566788888999999999999999998
Q ss_pred hhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 007543 410 KQDGFVPNVI--TYGTLIK-GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 486 (599)
Q Consensus 410 ~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 486 (599)
.+....|... .+..+.. .+...|+.++|+..|++..+. .|+....... ...+.+++++..+.+ +.
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~ 428 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GA 428 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CC
Confidence 8764333221 2233332 234678999999999998864 4554332222 234455666665533 55
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 487 DQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 487 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+..+|..+..++...|++++|.+.+++..+.++
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC--------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 667899999999999999999999999876554
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=7.2e-17 Score=160.43 Aligned_cols=278 Identities=11% Similarity=0.143 Sum_probs=92.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677888888888884 2348888888888889999998888653 467788888888888888888888
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHH
Q 007543 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQR 306 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~ 306 (599)
+++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+... .|.+++|...|..+
T Consensus 83 yl~~ark~-----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK-----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh-----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 77766532 4456778888888888888888887763 1444444444433 24555555555544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007543 307 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 386 (599)
Q Consensus 307 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 386 (599)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 14566666666666666666666655 255666666666666666666644433221 233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc------CHHHHHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--NNLEKMMEIYDKMRVNGIKP------NQTIFTT 458 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ 458 (599)
..++..|.+.|++++|..+++...... +-....|+-|..+|++- +++.+..+.|.. ..+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence 445566666666666666666655443 33455555555555543 233333333321 113333 2335566
Q ss_pred HHHHHHhcCCHhHHHH
Q 007543 459 IMDAYGKNKDFDSAVV 474 (599)
Q Consensus 459 li~~~~~~g~~~~A~~ 474 (599)
++-.|...++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 6666666666665543
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=9.5e-13 Score=139.46 Aligned_cols=404 Identities=12% Similarity=0.121 Sum_probs=280.6
Q ss_pred ccchhhHHHHHHHHhhh---chHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHH
Q 007543 67 EAGKKNWRRLMNQIEEV---GSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLM 143 (599)
Q Consensus 67 ~~~~~~~~~~~~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 143 (599)
+.+...|..++.. .+. ..+..+++.. ....+.........+......++.+.|.++|+.+.... |+...|..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~a-l~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERL-VAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHH
Confidence 4467789988874 333 3556666632 23344444555555555566789999999999998764 46666666
Q ss_pred HHH-HHHhcCChHHHHH----HHHHHHh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCC
Q 007543 144 LIT-AYGKQGDFNKAEK----VLSFMNK-KGYA-PSVVSHTALMEAYGR---------GGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 144 li~-~~~~~g~~~~A~~----~~~~m~~-~g~~-p~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
++. .....|+++.|++ +|+.... .|.. ++...|...+....+ .|++++|..+|++.++. +..+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhh
Confidence 664 3345688877765 7777654 2433 367889888887765 78999999999999873 2212
Q ss_pred -HHHHHHHHHHH-------------HHcCCHHHHHHHHHH------hHhccCCCCCCC--------HHHHHHHHHHHHHc
Q 007543 208 -ALTYQIILKLF-------------VEANKFKEAEEVFMT------LLDEEKSPLKPD--------QKMFHMMIYMYKKA 259 (599)
Q Consensus 208 -~~t~~~ll~~~-------------~~~g~~~~A~~~~~~------~~~~~~~~~~~~--------~~~~~~li~~~~~~ 259 (599)
...|....... ...+++..|..++.. .++.....++|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 23443332211 123456777777765 222111113444 35666666544332
Q ss_pred ----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHhcc----------cCCHH-------HHHHHHHHHHHcCCCCCHH
Q 007543 260 ----GGY----EKARKLFALMAERGVQQSTVTYNSLMSF----------ETNYK-------EVSKIYDQMQRAGLQPDVV 314 (599)
Q Consensus 260 ----g~~----~~A~~~~~~m~~~g~~~~~~~~~~ll~~----------~~~~~-------~a~~~~~~m~~~g~~~~~~ 314 (599)
++. +.|..+|++..... +.+...|...... .|+++ +|..+++...+.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 47788898887652 2244444443322 47776 8999999998632344688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPT-H-KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
.|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 8999999999999999999999999986 443 3 589999999999999999999999998752 2233333332222
Q ss_pred -HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC--HHHHHHHHHHHHhcCC
Q 007543 393 -YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-IKPN--QTIFTTIMDAYGKNKD 468 (599)
Q Consensus 393 -~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~ 468 (599)
+...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 346899999999999988754 3368899999999999999999999999999753 2332 5589899999999999
Q ss_pred HhHHHHHHHHHHh
Q 007543 469 FDSAVVWYKEMES 481 (599)
Q Consensus 469 ~~~A~~~~~~m~~ 481 (599)
.+.+..+.+++.+
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999977
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.2e-14 Score=140.98 Aligned_cols=252 Identities=12% Similarity=0.079 Sum_probs=143.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 148 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
....|++..|+..+++.......+.......+.++|...|++++|+..++. . -.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666666554432111123445556666666666666654433 1 234555666666666666666666
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHc
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA 307 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~ 307 (599)
.+.+++++... ..+.+...+..+...+.+.|++++|++.+++
T Consensus 85 ~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------------------------------ 126 (291)
T 3mkr_A 85 VAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------------------------------ 126 (291)
T ss_dssp HHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------------------------------
T ss_pred HHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------------------------------
Confidence 66666665321 0133445555566666666666666666543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 308 GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY---NILLDAFAISGMVDQARTVFKCMRRDRCSPDIC 384 (599)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (599)
+.+...+..++..|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+..
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~ 201 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLL 201 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHH
Confidence 1244455566666666666666666666666543 332111 12223333446667777777666654 344666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK-MMEIYDKMRVN 447 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 447 (599)
.++.+..++.+.|++++|...|+++.+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 66666667777777777777777666543 2356666666666666776654 45666666643
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=1.1e-15 Score=151.96 Aligned_cols=348 Identities=11% Similarity=0.078 Sum_probs=171.1
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
..++.++|.++++.+. .+..|..|+.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4556777777776662 2358889999999999999999999653 47779999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 977766653 4567788899999999999999887763 366679999999999999999999999977
Q ss_pred HcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007543 274 ERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI 353 (599)
Q Consensus 274 ~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 353 (599)
++-......+...|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 22222333333478999999999988 27899999999999999999997665543 234444557
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCC------CHHHHHHHH
Q 007543 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA--SDMEGAEKFFRRLKQDGFVP------NVITYGTLI 425 (599)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li 425 (599)
++..|.+.|++++|..+++...... +.....|+-+.-.|++- ++..+.++.|.. ..+++| +...|.-+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654 55677788887777765 355555555542 233343 455688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHH
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERN 505 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 505 (599)
..|.+.++++.|.. .|.++ +|+..--..+.+...+..+.+--.+...-..+ ..|.. .+-|+.++...=+..
T Consensus 290 ~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~--l~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 290 FLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLL--LNDLLMVLSPRLDHT 360 (449)
T ss_dssp HHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGG--HHHHHHHHGGGCCHH
T ss_pred HHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccCcH
Confidence 99999999998876 45554 34544444555666777777655555444443 34443 788888888888899
Q ss_pred HHHHHHHhcc
Q 007543 506 EANELLGNFN 515 (599)
Q Consensus 506 ~A~~~~~~~~ 515 (599)
.+.+++++..
T Consensus 361 r~v~~~~~~~ 370 (449)
T 1b89_A 361 RAVNYFSKVK 370 (449)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998854
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=3.3e-12 Score=141.34 Aligned_cols=281 Identities=13% Similarity=0.146 Sum_probs=172.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 264 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (599)
..|++++|.++.++. . +..+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++
T Consensus 1088 ~i~nldrAiE~Aerv-----n-~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----N-EPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred HHhhHHHHHHHHHhc-----C-CHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHH
Confidence 344455555554433 1 3455666666666777777777666443 345566666777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 265 ARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 265 A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
|.+.|....+..-.|...+. +.-+ .+++++.. ...+ .++...|..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~~e~~Idt~--LafaYAKl~rleele----~fI~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKARESYVETE--LIFALAKTNRLAELE----EFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHhhcccccccHH--HHHHHHhhcCHHHHH----HHHh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 77777665554322222222 1111 23333222 2222 245555666677777777777777777664
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 421 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 421 (599)
..|..+...|++.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..+...+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 1283 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHH
Confidence 266777777777777777777776552 556777777777777777777665543 23356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHhCCCCC------CHHHHHH
Q 007543 422 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN--KDFDSAVVWYKEMESCGFPP------DQKAKNI 493 (599)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~ 493 (599)
..++..|.+.|.+++|+.+++...... +-....|+-+..++++. ++.-++.++|..-.. ++| +...|.-
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHH
Confidence 788889999999999999998877433 22344676666666653 445556665554332 444 3456888
Q ss_pred HHHHHhhcCcHHHHHHHHH
Q 007543 494 LLSLAKTADERNEANELLG 512 (599)
Q Consensus 494 ll~~~~~~g~~~~A~~~~~ 512 (599)
+.-.|.+.|+++.|...+-
T Consensus 1361 lv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHhcccHHHHHHHHH
Confidence 8888999999999885443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.7e-13 Score=130.03 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKM 248 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~ 248 (599)
...|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|.+.++++++.... ..++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHHHH
Confidence 3455566666666666666666666665554 45556666666666666666666666665542100 0111 355
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007543 249 FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR 328 (599)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 328 (599)
+..+...|.+.|++++|...|++..+.. |+. ..+.+.|+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH----------------------------------RTA-------DILTKLRN 120 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------CCH-------HHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC----------------------------------chh-------HHHHHHhH
Confidence 6666667777777777777666665531 111 12333444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 329 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 408 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (599)
+++|...++++.... +.+...+..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...+++
T Consensus 121 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455555555544432 2223344444444444455555544444444321 22334444444444444444444444444
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 409 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 409 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
..+.. +.+..+|..+...+.+.|++++|.+.|++..
T Consensus 199 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 199 AIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44332 2234444444444444444444444444443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.8e-13 Score=128.43 Aligned_cols=226 Identities=13% Similarity=0.060 Sum_probs=187.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTY 211 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~----~~t~ 211 (599)
...+..+...|...|++++|...|++..+.. .+..+|..+...|...|++++|++.|++..+..+. ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567788999999999999999999999886 68899999999999999999999999998775332 12 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 291 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 291 (599)
..+...+...|++++|.+.|+++++. .|+. ..+.+.|++++|...++++....
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--------------- 135 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE-----HRTA-------DILTKLRNAEKELKKAEAEAYVN--------------- 135 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCH-------HHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc-----Cchh-------HHHHHHhHHHHHHHHHHHHHHcC---------------
Confidence 89999999999999999999999864 3442 34666777888888887776531
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 292 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 371 (599)
Q Consensus 292 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (599)
+.+...+..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...|
T Consensus 136 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 136 ------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1234567788888999999999999999998775 567888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 007543 372 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD 412 (599)
Q Consensus 372 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (599)
++..+.. +.+...|..+...+...|++++|...+++..+.
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9888753 446788888999999999999999999988754
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=9.7e-14 Score=128.45 Aligned_cols=200 Identities=17% Similarity=0.068 Sum_probs=161.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
+++...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566788889999999999999999999998875 6678899999999999999999999999998763 4467888899
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 007543 390 LSAYVNA-----------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 458 (599)
Q Consensus 390 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 458 (599)
...+... |++++|+..|++..+.. +-+...+..+...|...|++++|.+.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998865 3368889999999999999999999999999876 67889999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 459 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+..++...|++++|+..++++.+.. |.+...+..+..++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998842 4456778888999999999999999998764
No 38
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=7.3e-12 Score=138.58 Aligned_cols=315 Identities=10% Similarity=0.120 Sum_probs=237.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 5667777777776542 6789999999999999999999999764 377889999999999999999999
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh---cccCCHHHHHHHHHHHHH
Q 007543 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM---SFETNYKEVSKIYDQMQR 306 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll---~~~~~~~~a~~~~~~m~~ 306 (599)
.+....+. .++....+.++.+|++.+++++...+. + .++...|..+- ...+++++|...|...
T Consensus 1156 yL~mArk~-----~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1156 YLQMARKK-----ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHhh-----cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 99988753 233334446999999999998644442 2 23444444322 2468999999999985
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007543 307 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 386 (599)
Q Consensus 307 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 386 (599)
..|..+...|++.|++++|.+.+++. .+..+|..+-.+|...|++..|......+ ..++..+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 1283 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHH
Confidence 37999999999999999999999877 36789999999999999999999876643 3367778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc------CHHHHHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--NNLEKMMEIYDKMRVNGIKP------NQTIFTT 458 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ 458 (599)
..++..|.+.|.+++|+.+++...... +-....|+-|...|++- +++.++.++|..-. +++| +...|..
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHH
Confidence 899999999999999999998887654 34556677777777764 45666666665433 3333 4668999
Q ss_pred HHHHHHhcCCHhHHHHHHH-------------HHHhCCCCCCHHHHHHHHHHHhhcC---------------cHHHHHHH
Q 007543 459 IMDAYGKNKDFDSAVVWYK-------------EMESCGFPPDQKAKNILLSLAKTAD---------------ERNEANEL 510 (599)
Q Consensus 459 li~~~~~~g~~~~A~~~~~-------------~m~~~g~~p~~~~~~~ll~~~~~~g---------------~~~~A~~~ 510 (599)
++-.|.+.|+++.|....- +... -..|...|...+..|...+ +.+.+.++
T Consensus 1361 lv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l 1438 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNY 1438 (1630)
T ss_pred HHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHH
Confidence 9999999999999983221 1111 2345666666666666555 66677666
Q ss_pred HHh
Q 007543 511 LGN 513 (599)
Q Consensus 511 ~~~ 513 (599)
+++
T Consensus 1439 ~~~ 1441 (1630)
T 1xi4_A 1439 FSK 1441 (1630)
T ss_pred HHH
Confidence 664
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=3.7e-13 Score=124.50 Aligned_cols=198 Identities=15% Similarity=0.065 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
++...|..+...+.+.|++++|+..|++..+..+. +...+..+...+.+.|++++|...|++.++.. +.+...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART----PRYLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHH
Confidence 46667777777778888888888888877776443 66777777777788888888888888777643 44566777
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007543 251 MMIYMYKKA-----------GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALL 319 (599)
Q Consensus 251 ~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 319 (599)
.+...+.+. |++++|+..|++..+. . +-+...+..+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------------~-P~~~~~~~~l 124 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------------------------------N-PRYAPLHLQR 124 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------------------------------C-TTCHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------------------------------C-cccHHHHHHH
Confidence 777777666 5555555555554432 1 2244556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 399 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 399 (599)
...|...|++++|+..|++.++.. .+...+..+...|...|++++|...|++..+.. +.+...+..+...+...|++
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCH
Confidence 666666777777777776666655 556666666666666666666666666665532 23455555566666666666
Q ss_pred HHHHHHHHHH
Q 007543 400 EGAEKFFRRL 409 (599)
Q Consensus 400 ~~A~~~~~~m 409 (599)
++|...|++.
T Consensus 202 ~~A~~~~~~~ 211 (217)
T 2pl2_A 202 EEAARAAALE 211 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.6e-13 Score=130.20 Aligned_cols=119 Identities=11% Similarity=-0.025 Sum_probs=72.2
Q ss_pred cCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYA---PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
.|++++|.+.|+++.+.... .+..+|..+...|...|++++|+..|+++.+..+. +..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 45666666666666654211 13455666666666666777776666666654322 555666666666666666666
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+.|+++++.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 97 ~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 97 YEAFDSVLELD----PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHC----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666532 33455666666666666666666666666554
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=9e-12 Score=129.73 Aligned_cols=313 Identities=12% Similarity=0.036 Sum_probs=224.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc---C
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-----G--PRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEE---K 239 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~ 239 (599)
.....||.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...++++++.. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34678999999999999999999999987542 1 122 46789999999999999999999999886531 1
Q ss_pred CC-CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHH-HHHHHh------cccCCHHHHHHHHHHHHHcCC
Q 007543 240 SP-LKPDQKMFHMMIYMYKKA--GGYEKARKLFALMAERGVQQSTV-TYNSLM------SFETNYKEVSKIYDQMQRAGL 309 (599)
Q Consensus 240 ~~-~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll------~~~~~~~~a~~~~~~m~~~g~ 309 (599)
.. ......++..+..++.+. +++++|+..|++..+.. |+.. .+..+. ...++.++|.+.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 11 122356677766666655 46999999999998763 4432 222221 12467778888888888764
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007543 310 QPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS 385 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 385 (599)
+.+...+..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...|++..+.. +.+..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3356666666655554 456789999999988775 6678889999999999999999999999988753 335666
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 386 YTTMLSAYVNA-------------------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 386 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
+..+...|... +..+.|...+++..+.. +.+..++..+...|...|++++|.+.|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 76666655432 34567888888877654 33566788899999999999999999999987
Q ss_pred CCCCcCHH--HHHHHHH-HHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 447 NGIKPNQT--IFTTIMD-AYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 447 ~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
....+... .+..+.. .....|++++|+..+++..+ +.|+....
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~ 408 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK 408 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH
Confidence 64333221 2333333 24578999999999999988 66765433
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=8.3e-13 Score=126.51 Aligned_cols=131 Identities=12% Similarity=0.102 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIILK 216 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~ 216 (599)
..+......+.+.|++++|.+.|++..+... .+...|..+...|...|++++|++.|++..+.+..+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3444556666667777777777777666532 244466666666777777777777776666532111 1233556666
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+...|++++|.+.|+++++.. +.+..++..+...|...|++++|...|++..+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD----TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHcccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 6666666666666666665432 33445566666666666666666666655443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.9e-12 Score=122.48 Aligned_cols=207 Identities=12% Similarity=0.056 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007543 246 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 325 (599)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 325 (599)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~la~~~~~ 83 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---------------------------------PSSADAHAALAVVFQT 83 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------------------------------CChHHHHHHHHHHHHH
Confidence 4567777778888888888888887776531 2356778888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEK 404 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 404 (599)
.|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.+..| +...+..+...+...|++++|..
T Consensus 84 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999888765 4577788888888999999999999999887733344 45677778888889999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 007543 405 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 484 (599)
Q Consensus 405 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 484 (599)
.++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+ .
T Consensus 163 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~ 238 (252)
T 2ho1_A 163 YFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--L 238 (252)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--H
Confidence 999887754 3467888888888999999999999999888643 34567788888888899999999999998877 3
Q ss_pred CCCHHH
Q 007543 485 PPDQKA 490 (599)
Q Consensus 485 ~p~~~~ 490 (599)
.|+...
T Consensus 239 ~p~~~~ 244 (252)
T 2ho1_A 239 YPGSLE 244 (252)
T ss_dssp CTTSHH
T ss_pred CCCCHH
Confidence 455443
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=1.6e-13 Score=131.64 Aligned_cols=185 Identities=12% Similarity=0.011 Sum_probs=89.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 185 RGGRYKNAEAIFRRMQSSGPR---PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
..|++++|++.|+++.+.... .+..++..+...+...|++++|.+.|+++++.. +.+..++..+...|...|+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHccC
Confidence 345566666666666554221 123445555555666666666666666655432 3345555555555556666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 93 ~~~A~~~~~~al~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD---------------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHHHC---------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666555555554420 12344555555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
.. |+.......+..+...|++++|...+++..... +++...+. ++..+...++.++|...+++..
T Consensus 140 ~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 140 DD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred hC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHh
Confidence 32 222222223333344455555555554443321 12222222 3333444444444444444443
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=1.5e-12 Score=130.62 Aligned_cols=248 Identities=7% Similarity=0.011 Sum_probs=177.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
...|..+...+.+.|++++|++.|+++.+... -+..+|+.+..++...|+ +++|+..|++.++..+. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 34577788888889999999999999888743 368889999999999996 99999999999886554 7778888888
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
++...|++++|+..|+++++.+ +.+..+|..+..++.+.|++++|+..|+++.+..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld----P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------------------- 230 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD----AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------------------- 230 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------
Confidence 8889999999999999888754 5677888888888888888888888888887652
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGK-ARREEEA-----LAVFEEMLDAGVRPTHKAYNILLDAFAISG--MVDQAR 368 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~ 368 (599)
+-+...|+.+..++.+ .|..++| +..|++.+... +-+...|+.+...+.+.| ++++|+
T Consensus 231 -------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 231 -------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 2356677777777777 5554555 46677776654 445667777777777666 467777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-hhCCCCCCHHHHHHHHHHH
Q 007543 369 TVFKCMRRDRCSPDICSYTTMLSAYVNAS---------DMEGAEKFFRRL-KQDGFVPNVITYGTLIKGY 428 (599)
Q Consensus 369 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~ 428 (599)
+.+.++ + ..+.+...+..+...|.+.| ..++|+++++++ .+.+ +-....|..+...+
T Consensus 297 ~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 297 NQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 777666 2 22445566666666666653 246677777666 4432 22334444444433
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.8e-12 Score=117.77 Aligned_cols=202 Identities=9% Similarity=0.022 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007543 245 DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG 324 (599)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 324 (599)
+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~ 53 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------------------------------PKNELAWLVRAEIYQ 53 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------------------------------ccchHHHHHHHHHHH
Confidence 45566677777777777777777777665531 224556677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS-GMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGA 402 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 402 (599)
..|++++|...++++.+.. +.+..++..+...|... |++++|...++++.+.+..|+ ...+..+...+...|++++|
T Consensus 54 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776654 44666777777777777 777777777777776322233 45666777777777777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 403 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777776653 2356677777777777778888877777776542113556666667777777777777777777765
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=3.2e-12 Score=120.86 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=149.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...|...|++++|.+.|+++.+.. +.+..+|..+...|...|++++|.+.|+++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3556778888888899999999998887764 336778888888888888888888888888776433 67777888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 297 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a 297 (599)
+...|++++|.+.++++++ ....+.+...+..+...|.+.|++++|...|+++.+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------- 171 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--------------------- 171 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------
Confidence 8888888888888888864 11123345667777788888888888888877766531
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
+.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++++.+.
T Consensus 172 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 172 ------------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2245667777777777888888888887776654 455666777777777777777777777777654
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=3.1e-11 Score=115.75 Aligned_cols=222 Identities=14% Similarity=0.054 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
..++..+...+...|++++|.+.|++..+ +.+...+..+...|.. .+++++|...|++..+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------- 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------- 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--------
Confidence 34444444555555555555555555543 2233444555555555 55555555555544432
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 284 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 284 ~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.
T Consensus 72 ------------------------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 72 ------------------------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYH 121 (273)
T ss_dssp ------------------------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ------------------------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHH
Confidence 1 34445555555555 666666666666665543 4555666666666
Q ss_pred H----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-
Q 007543 360 I----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK- 430 (599)
Q Consensus 360 ~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 430 (599)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 6 666666666666666543 45555556666665 667777777776666543 45566666667766
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhC
Q 007543 431 ---VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESC 482 (599)
Q Consensus 431 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 482 (599)
.+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+++++..+.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 777777777777766653 24556666666666 77777777777777664
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=1.7e-12 Score=124.36 Aligned_cols=232 Identities=15% Similarity=0.104 Sum_probs=128.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 292 (599)
.....+...|++++|...|+++++.. +.+..++..+...|...|++++|+..+++..+.+..+
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------- 70 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT------------- 70 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT-------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch-------------
Confidence 33444445555555555555554422 2223344555555555555555555555544421000
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
......|..+...|...|++++|+..|++..+.. +.+..++..+...|...|++++|...|+
T Consensus 71 -----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 71 -----------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp -----------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred -----------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1123345555555666666666666666655543 3344566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNG- 448 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~- 448 (599)
+..+. .+.+...+..+...+...+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...+++..+..
T Consensus 133 ~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 133 KQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp GGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 66554 13344555555523333447777777777666543 2245666666666666666 666777777665421
Q ss_pred CCcC------HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 449 IKPN------QTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 449 ~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
-.|+ ..+|..+...|.+.|++++|...++++.+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1122 24666777777778888888888887776
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=3.8e-12 Score=117.79 Aligned_cols=201 Identities=13% Similarity=-0.010 Sum_probs=119.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...|...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.+.|+++.+..+ .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4455666667777777777777777666643 22466666677777777777777777776665432 255566666666
Q ss_pred HHHc-CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 218 FVEA-NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 218 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
+... |++++|...++++++ ....+.+...+..+...+...|++++|...|+++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------- 143 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------------------- 143 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------
T ss_pred HHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------
Confidence 6666 666666666666664 11112234556666666666666666666666555431
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
+.+...+..+...+.+.|++++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.
T Consensus 144 -------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 144 -------------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1234455556666666666666666666665543 2 445555555555566666666666666554
Q ss_pred h
Q 007543 376 R 376 (599)
Q Consensus 376 ~ 376 (599)
+
T Consensus 210 ~ 210 (225)
T 2vq2_A 210 A 210 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=2.7e-12 Score=128.86 Aligned_cols=230 Identities=10% Similarity=0.081 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK-FKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
..+|+.+...+.+.|++++|++.|++.++..+. +...|..+..++...|+ +++|+..|+++++.+ +.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----CCCHHHHHH
Confidence 567888888899999999999999999886544 67788888899999996 999999999998754 567888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 331 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (599)
+..++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld---------------------------------P~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD---------------------------------AKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC---------------------------------ccCHHHHHHHHHHHHHcCChHH
Confidence 9999999999999888888887641 3467788888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHH
Q 007543 332 ALAVFEEMLDAGVRPTHKAYNILLDAFAI-SGMVDQA-----RTVFKCMRRDRCSPDICSYTTMLSAYVNAS--DMEGAE 403 (599)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~ 403 (599)
|+..|+++++.. +.+...|+.+...+.+ .|..++| +..|++.++.. +-+...|+.+...+...| +.++|+
T Consensus 219 Al~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 999999988875 5577888888888888 5554666 46666666542 234556666666666666 466666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 007543 404 KFFRRLKQDGFVPNVITYGTLIKGYAKVN---------NLEKMMEIYDKM 444 (599)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 444 (599)
+.+.++ +.. +.+...+..++..|.+.| .+++|.++|+++
T Consensus 297 ~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 297 NQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 666665 322 335566666666666653 246666666666
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=2.8e-11 Score=116.01 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=76.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----GGRYKNAEAIFRRMQSSGPRPSALTYQ 212 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 212 (599)
++..+..+...|...|++++|.+.|++..+. .+..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3455556666666666666666666666663 245566666666666 666666666666666554 555566
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 007543 213 IILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAE 274 (599)
Q Consensus 213 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 274 (599)
.+...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|+..|++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 66666666 66666666666666542 145555556666655 5555555555555444
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1e-12 Score=123.37 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=125.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
....|..+...+...|++++|...|+++.+.. +.+...|..+...|...|++++|++.|+++.+..+ .+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34556677777888888888888888887753 33677788888888888888888888888776543 25667777777
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
.+...|++++|.+.++++++.. +.+..++..+...+.+.|++++|...++++.+..
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------- 155 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG----MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------------------- 155 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT----CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------------
Confidence 7777888888888877776543 4456677777777777777777777777665531
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
+.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...++++.+
T Consensus 156 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 156 -------------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 2244556666667777777777777777766553 34556666666667777777777777766655
Q ss_pred C
Q 007543 377 D 377 (599)
Q Consensus 377 ~ 377 (599)
.
T Consensus 222 ~ 222 (243)
T 2q7f_A 222 I 222 (243)
T ss_dssp H
T ss_pred c
Confidence 4
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.3e-12 Score=122.76 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007543 246 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 325 (599)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 325 (599)
...|..+...+...|++++|...|+++.+. .+.+...+..+...|.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------------------~~~~~~~~~~la~~~~~ 69 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------------------------------NKEDAIPYINFANLLSS 69 (243)
T ss_dssp -------------------CCTTHHHHHTT---------------------------------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------------------CcccHHHHHHHHHHHHH
Confidence 345555666666667777776666666543 12345666677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 405 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (599)
.|++++|+..++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 70 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 70 VNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 777777777777776654 4466677777777777788888887777776643 34566777777778888888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...++++.+
T Consensus 148 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 148 LQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 88777653 3467777788888888888888888888877542 33466788888888888888888888888877
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=1.6e-12 Score=134.37 Aligned_cols=367 Identities=14% Similarity=0.106 Sum_probs=235.5
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF---NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-- 187 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-- 187 (599)
...++++.|.+.++.+.+.+ +...+..|..+|...|+. ++|.+.|++..+. +...+..|...+...|
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 44678899999998887765 345566777888888888 8999999998864 6667778877666655
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 188 ---RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE---AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 188 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
++++|+..|++..+.|.. + .+..|...|...+..+. +.+.+....+. .+......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCC
Confidence 788999999999887643 2 66677777877765444 44444444432 234467778888888885
Q ss_pred HHHH----HHHHHHHHHcCCCCCHH-HHHHHhcccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCH
Q 007543 262 YEKA----RKLFALMAERGVQQSTV-TYNSLMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA----RRE 329 (599)
Q Consensus 262 ~~~A----~~~~~~m~~~g~~~~~~-~~~~ll~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~ 329 (599)
++++ ..+++..... .|+.. ....+....+ +.++|.+.|+...+.| .++...+..|...|... +++
T Consensus 157 ~~~~~~~a~~~~~~a~~~--~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT--TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT--CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cccCHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 5444 4444433322 23311 1112222356 7889999999998887 45666666777777555 689
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 007543 330 EEALAVFEEMLDAGVRPTHKAYNILLDA-F--AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-----DMEG 401 (599)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~ 401 (599)
++|+..|++.. .| +...+..|... | ...+++++|...|++..+.| +...+..+...|. .| +.++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 55666666666 3 46889999999999998876 7778888887777 55 9999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHH
Q 007543 402 AEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAV 473 (599)
Q Consensus 402 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 473 (599)
|...|++.. . -+...+..|...|.. ..++++|.+.|++..+.|. ......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999887 3 367778888877776 3489999999999988762 3344455555553 56899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 474 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 474 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+++...+.| .++.......+......++.++|..+.++..
T Consensus 379 ~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 379 VFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999998877 3333333233333344567788888887754
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=2.4e-12 Score=130.88 Aligned_cols=305 Identities=15% Similarity=0.109 Sum_probs=200.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CCC-CCC
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SPL-KPD 245 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~ 245 (599)
....+......+...|++++|+..|++..+.++. + ..++..+...+...|++++|...++++++... .+. +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4555566666666667777777776666654322 2 23555666666677777777777666543210 010 112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007543 246 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 325 (599)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 325 (599)
..++..+...|...|++++|...+++..+. ..... .......++..+...|..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~--~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDI-------------------------SRELN--DKVGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HHhcc--cccchHHHHHHHHHHHHH
Confidence 456777888888888888888888776642 11110 000113467777788888
Q ss_pred cCC--------------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 007543 326 ARR--------------------EEEALAVFEEMLDA----GVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC- 379 (599)
Q Consensus 326 ~g~--------------------~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 379 (599)
.|+ +++|...+.+..+. +.. ....++..+...|...|++++|...+++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 888 88888888876532 111 1234678888899999999999999988765310
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007543 380 SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFV-PN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN--- 447 (599)
Q Consensus 380 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 447 (599)
.++ ..++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 122 247788888999999999999999987642100 11 567888999999999999999999988742
Q ss_pred -CCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCcH
Q 007543 448 -GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPD-QKAKNILLSLAKTADER 504 (599)
Q Consensus 448 -~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~ 504 (599)
+-.+. ..++..+...|...|++++|...+++..+ .+..+. ..++..+...+...|+.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 21111 45788899999999999999999998764 221222 23455566666666654
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=1.7e-12 Score=132.49 Aligned_cols=283 Identities=12% Similarity=0.070 Sum_probs=178.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSS----GP-RPSALT 210 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t 210 (599)
.+..+...+...|++++|...|+++.+.+.. +. .+|..+...|...|++++|++.|++..+. +. .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3446778889999999999999999886422 33 57888999999999999999999887653 11 123457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccC--CCCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 007543 211 YQIILKLFVEANKFKEAEEVFMTLLDEEK--SPLKPDQKMFHMMIYMYKKAGG-----------------YEKARKLFAL 271 (599)
Q Consensus 211 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 271 (599)
+..+...|...|++++|...++++++... ...+....++..+...|...|+ +++|+..+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 78888899999999999999998875310 0012234578888889999999 6666666655
Q ss_pred HHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC---
Q 007543 272 MAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPT--- 347 (599)
Q Consensus 272 m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~--- 347 (599)
..+ +...... ......++..+...|...|++++|+..+++..+... .++
T Consensus 209 al~-------------------------~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 209 NLK-------------------------LMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHH-------------------------HHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHH-------------------------HHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 443 2222100 011234677778888888888888888887754310 011
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHH
Q 007543 348 -HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLI 425 (599)
Q Consensus 348 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li 425 (599)
..++..+...|...|++++|...|++...... +.+. .....++..+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV-------------------------------ELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-------------------------------HcCCHHHHHHHHHHHH
Confidence 12445555555555555555555554433100 0000 01134455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVN----GIKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..|...|++++|.+.+++..+. +-.+ ...++..+...|.+.|++++|..++++..+
T Consensus 311 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 311 NTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666665531 1011 133666677777777777777777777765
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=4.3e-12 Score=129.57 Aligned_cols=286 Identities=12% Similarity=0.067 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhcc--CCCCCCCH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA----LTYQIILKLFVEANKFKEAEEVFMTLLDEE--KSPLKPDQ 246 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 246 (599)
...+..+...+...|++++|+..|+++.+.++. +. ..+..+...|...|++++|...++++++.. ....+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778899999999999999999886443 33 478888899999999999999999887531 01112345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007543 247 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 326 (599)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 326 (599)
.++..+...|...|++++|...|++..+. +.... .......++..+...|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~--~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL-------------------------ARQLG--DRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------HHHhh--chHHHHHHHHHHHHHHHHc
Confidence 67888999999999999999999887652 11110 0011234677788888888
Q ss_pred CC-----------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 327 RR-----------------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 327 g~-----------------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
|+ +++|+..+++..+. ...... ......++..+
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~--~~~~~~~~~~l 229 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGD--RGAQGRACGNL 229 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTC--HHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCC--HHHHHHHHHHH
Confidence 88 67777666654321 111100 00012234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIK-PNQTIFTTI 459 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~l 459 (599)
...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+. +-. ....++..+
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555443110 011 236777888888899999999888887642 111 114578889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhccC
Q 007543 460 MDAYGKNKDFDSAVVWYKEMESC----GFPPD-QKAKNILLSLAKTADERNEANELLGNFNH 516 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 516 (599)
...+...|++++|..++++..+. +..+. ..++..+..++...|++++|..++++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988652 11111 34677788899999999999999998653
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=2.3e-12 Score=131.10 Aligned_cols=306 Identities=15% Similarity=0.055 Sum_probs=221.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPRP- 206 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 206 (599)
.....+..+...+.+.|++++|...|++..+.+.. + ..+|..+...|...|++++|...|++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34456667888999999999999999999886422 3 357889999999999999999999987542 2122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC-C-CCCCHHHHHHHHHHHHHcCC--------------------HHH
Q 007543 207 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS-P-LKPDQKMFHMMIYMYKKAGG--------------------YEK 264 (599)
Q Consensus 207 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~--------------------~~~ 264 (599)
...++..+...+...|++++|...++++++.... + ......++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456778888999999999999999988753110 0 01114578888889999999 777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 265 ARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQP-DVVSYALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 265 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
|...+.+..+. +.. .+..+ ...++..+...|...|++++|...+++..+..
T Consensus 166 A~~~~~~al~~-------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL-------------------------VTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH-------------------------HHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------HHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 77777665431 111 11111 23467888899999999999999999886431
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007543 344 V-RPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 344 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 413 (599)
. .++ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 122 23788889999999999999999998764310 112 4577888889999999999999999876431
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHh
Q 007543 414 F-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 414 ~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~ 470 (599)
. .++ ..++..+...|...|++++|.+.+++..+. +-.+. ..++..+...+...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1 112 567888999999999999999999987642 21222 346677777777777653
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=2.9e-10 Score=121.79 Aligned_cols=427 Identities=11% Similarity=0.085 Sum_probs=291.6
Q ss_pred hHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC---hHHHHHHH
Q 007543 85 SAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGD---FNKAEKVL 161 (599)
Q Consensus 85 ~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 161 (599)
+.+..|+.. ....+...+.....+..+...+....+..+++.+... ++.....|..-+..-.+.|+ ++.+.++|
T Consensus 50 d~i~~lE~~-l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDM-IEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHH-HHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334445432 2344556666666666556667888899999988876 36777888888888888888 99999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHH---------
Q 007543 162 SFMNKKG-YAPSVVSHTALMEAYGRGGRY--------KNAEAIFRRMQS-SGP-RP-SALTYQIILKLFVE--------- 220 (599)
Q Consensus 162 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p-~~~t~~~ll~~~~~--------- 220 (599)
++..... .+|++..|..-+.-..+.+.. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998863 137899999888777665543 334477777654 466 55 35677887776542
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC-------
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG-------------GYEKARKLFALMAER--GVQ------- 278 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~~--g~~------- 278 (599)
.++++.+.++|++++.. +...-..+|......-...+ +++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 34577889999999842 22222345544433222211 233455555544321 111
Q ss_pred --------C-----C---HHHHHHHhccc-C---------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 279 --------Q-----S---TVTYNSLMSFE-T---------NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 279 --------~-----~---~~~~~~ll~~~-~---------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
| + ...|...+... . ..+.+..+|++....- +-+...|...+..+.+.|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 0 12344444321 1 1234567788887763 44778888888888889999999
Q ss_pred H-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHH
Q 007543 333 L-AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR---------CSPD------------ICSYTTML 390 (599)
Q Consensus 333 ~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~li 390 (599)
. .+|++.... ++.+...|...+...-+.|++++|..+|+.+.... -.|+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 7 999999875 36677778889999999999999999999987631 0132 23678888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
....+.|+.+.|.++|.++.+.-..+....|...+..-.+.+ +.+.|.++|+...+. ++-+...|..+++.....|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 888889999999999999987611223344444333334444 599999999999875 344677888999988999999
Q ss_pred hHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 470 DSAVVWYKEMESCGFPP--DQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 470 ~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
+.|..+|++......++ ....|...+..-.+.|+.+.+..+.+++.+..++
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999998753222 2356888888889999999999999998755443
No 61
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=4.7e-11 Score=123.35 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH---
Q 007543 119 NVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQG-----DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYK--- 190 (599)
Q Consensus 119 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--- 190 (599)
++|.+.++...+. ++..+..|..++...| ++++|.+.|++..+.|.. .++..|...|...+..+
T Consensus 55 ~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~ 126 (452)
T 3e4b_A 55 KQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNV 126 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTC
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCH
Confidence 4555555444422 3445555666444444 566777777777766532 25666666666554433
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC---CHH
Q 007543 191 NAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK----EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG---GYE 263 (599)
Q Consensus 191 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 263 (599)
++.+.+.+....| +......+...|...+.++ .+..+++.... + .|+ .+..|...|.+.| +.+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~-~~~--a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----T-TDI--CYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----T-CTT--HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----C-CHH--HHHHHHHHHHHcCCcccHH
Confidence 3344444443333 2334455555666666333 33333443321 1 222 6666777777777 677
Q ss_pred HHHHHHHHHHHcCCCCCH--HHHHHHhcc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHH
Q 007543 264 KARKLFALMAERGVQQST--VTYNSLMSF----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINA-Y--GKARREEEALA 334 (599)
Q Consensus 264 ~A~~~~~~m~~~g~~~~~--~~~~~ll~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~ 334 (599)
+|++.|++..+.|..... .....+... ..++++|...|+... .| +...+..|... | ...+++++|+.
T Consensus 197 ~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 777777777766643333 112222221 246677777777766 33 44455555555 3 34667777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 007543 335 VFEEMLDAGVRPTHKAYNILLDAFAISG-----MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKF 405 (599)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 405 (599)
.|++..+.| +...+..|...|. .| ++++|...|++.. .| +...+..+...|.. ..+.++|...
T Consensus 273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 777776654 5556666666665 44 7777777777665 32 55566666655555 2377777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 448 (599)
|++..+.| +......|...|.. ..+.++|...|+...+.|
T Consensus 345 ~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 345 LLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 77776655 22334455555543 346666777666666554
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=5.9e-12 Score=124.03 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CCCCHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LKPDQKM 248 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~ 248 (599)
.+......+...|++++|+..|+++.+..+. + ...+..+...+...|++++|.+.+++.++... .+ .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444455555666666666666666554322 2 23455556666666666666666665543100 00 0122456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC
Q 007543 249 FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL-QPDVVSYALLINAYGKAR 327 (599)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g 327 (599)
+..+...|...|++++|...+.+..+. .. +.+. .....++..+...|...|
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------~~---~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDI-------------------------SR---ELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HH---HTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH-------------------------HH---HhcCchHHHHHHHHHHHHHHHcC
Confidence 777888888888888888888776542 00 0000 001335667777777778
Q ss_pred C--------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC
Q 007543 328 R--------------------EEEALAVFEEMLDA----GV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SP 381 (599)
Q Consensus 328 ~--------------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p 381 (599)
+ +++|...+++.... +. .....++..+...|...|++++|...+++..+... .+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 7 78888777765432 10 11123566677777778888888877776654210 01
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 007543 382 D----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----G 448 (599)
Q Consensus 382 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 448 (599)
+ ..++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+. +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 22556666666777777777777766543210 011 345566666666677777777666665531 1
Q ss_pred CCc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 449 IKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 449 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
-.+ ...++..+...+.+.|++++|...++++.+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 011 123555666666666666666666666655
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=3e-11 Score=108.21 Aligned_cols=172 Identities=16% Similarity=0.097 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+..+|..+...|.+.|++++|+..|++.++.. +-+..++..+...|.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56788889999999999999999999988875 5677888889999999999999999998887653 446677777778
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
.+...++++.|...+.+..+.. +-+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888999999999998887754 3467788888889999999999999999888653 3457788888899999999999
Q ss_pred HHHHHHHHHhCCCCCCHH
Q 007543 472 AVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~ 489 (599)
|++.|++..+ +.|+..
T Consensus 160 A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHh--CCccCH
Confidence 9999998887 456543
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=6.1e-12 Score=123.93 Aligned_cols=278 Identities=16% Similarity=0.086 Sum_probs=204.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPRP-SALT 210 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t 210 (599)
.+......+...|++++|...|+++.+.... + ...|..+...|...|++++|++.+++.... +..| ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445677888999999999999999886422 3 467888999999999999999999887542 1111 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHH
Q 007543 211 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGG--------------------YEKAR 266 (599)
Q Consensus 211 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 266 (599)
+..+...+...|++++|...+++.++.... .++ ..++..+...|...|+ +++|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRE--LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 778888999999999999999988753111 122 3477888889999999 77777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 007543 267 KLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-R 345 (599)
Q Consensus 267 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 345 (599)
..+++... +..... .......++..+...|...|++++|...+++..+... .
T Consensus 164 ~~~~~a~~-------------------------~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 164 DLYEENLS-------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHH-------------------------HHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------------HHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 77765543 111110 0011234678888899999999999999998764310 1
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---
Q 007543 346 PT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDG--- 413 (599)
Q Consensus 346 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 413 (599)
++ ..++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|...+++..+..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 12 23778888999999999999999998764310 112 4577888889999999999999999876431
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 414 --FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 414 --~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
......++..+...|.+.|++++|.+.+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1112457788999999999999999999998864
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=2.6e-11 Score=126.10 Aligned_cols=214 Identities=12% Similarity=0.081 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE-EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
++++.+.++...... +.+...+..+...|...|++ ++|+..|++.++.. +.+...|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555666555442 34778899999999999999 99999999998875 5568899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVNA---------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--------NNLE 435 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~ 435 (599)
+..+. .|+...+..+...|... |++++|+..|++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99876 57788899999999999 99999999999998865 34788999999999998 9999
Q ss_pred HHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 007543 436 KMMEIYDKMRVNGIK---PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 512 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 512 (599)
+|.+.|++..+.. + -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|++++|...+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999753 2 378899999999999999999999999998842 3445678888889999999999987665
Q ss_pred hc
Q 007543 513 NF 514 (599)
Q Consensus 513 ~~ 514 (599)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=3.8e-10 Score=110.29 Aligned_cols=217 Identities=13% Similarity=0.110 Sum_probs=158.3
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc-------CCH-------HHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 007543 225 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA-------GGY-------EKARKLFALMAERGVQQSTVTYNSLMSF 290 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 290 (599)
++|..+|++++... +.+...|..++..+... |++ ++|..+|++.
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA------------------ 90 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA------------------ 90 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH------------------
Confidence 57777888887643 56777888777776543 553 4455544444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHcCCHHHHH
Q 007543 291 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HK-AYNILLDAFAISGMVDQAR 368 (599)
Q Consensus 291 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~ 368 (599)
.+.-.+-+...|..++..+.+.|++++|..+|++.++. .|+ .. .|..++..+.+.|++++|.
T Consensus 91 --------------l~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 91 --------------ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp --------------HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred --------------HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHH
Confidence 43111235567888899999999999999999999875 343 33 7888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 369 TVFKCMRRDRCSPDICSYTTMLSAYV-NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 369 ~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.+|++..+.. +++...|........ ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++....
T Consensus 155 ~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 155 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988753 234444543333322 3688999999998887653 336778888888888889999999999988875
Q ss_pred C-CCc--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 448 G-IKP--NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 448 ~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
. +.| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 454 356888888888888999999888888876
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=3.7e-10 Score=110.38 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 007543 119 NVVSEVLEWLRIQSWWDFNEMDFLMLITAYG-------KQGDF-------NKAEKVLSFMNK-KGYAPSVVSHTALMEAY 183 (599)
Q Consensus 119 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~g~~p~~~~~~~li~~~ 183 (599)
++|..+++.+.... +.++..|..++..+. +.|++ ++|..+|++..+ .. +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45566666666654 466777777777665 35775 788888888887 32 23566888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH-HcCC
Q 007543 184 GRGGRYKNAEAIFRRMQSSGPRPSAL-TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK-KAGG 261 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~ 261 (599)
.+.|++++|.++|++..+..+. +.. .|..+...+.+.|++++|..+|+++++.. +.+...|...+.... ..|+
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST----TCCTHHHHHHHHHHHHTSCC
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHcCC
Confidence 8888888888888888774322 232 67777777888888888888888887532 233444443333322 2466
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++|..+|++..+. .+.+...|..++..+.+.|++++|..+|++.+.
T Consensus 185 ~~~A~~~~~~al~~---------------------------------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 185 KSVAFKIFELGLKK---------------------------------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHHHH---------------------------------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666665542 123566677777777888888888888888877
Q ss_pred CC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 342 AG-VRP--THKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 342 ~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
.. ++| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 232 ~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 52 343 4567777777777788888888887777654
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1.2e-10 Score=104.13 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=57.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
+..|..|...|.+.|++++|.+.|++..+... -+..+|..+...|.+.|++++|+..+.+.....+. +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 34444444445555555555555544444321 13444444444444444444444444444433222 33334444444
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+...++++.|.+.+.+..... +.+...+..+...|.+.|++++|++.|++..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN----TVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 444444444444444443321 2233444444444444444444444444433
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=3.2e-11 Score=125.48 Aligned_cols=215 Identities=11% Similarity=0.015 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 118 WNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF-NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIF 196 (599)
Q Consensus 118 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 196 (599)
.+.+.+.++...... +.+...+..+...|...|++ ++|++.|++..+... .+..+|..+...|.+.|++++|++.|
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555665554433 45678888899999999999 999999999888642 36889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc--------
Q 007543 197 RRMQSSGPRPSALTYQIILKLFVEA---------NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA-------- 259 (599)
Q Consensus 197 ~~m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 259 (599)
++..+.. |+...+..+...+... |++++|.+.|+++++.. +.+...|..+...|...
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 9998854 6678888888888888 99999999999998753 55678888888888887
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 260 GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEM 339 (599)
Q Consensus 260 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (599)
|++++|+..|++..+.. |. ...+...|..+..+|...|++++|...|++.
T Consensus 235 g~~~~A~~~~~~al~~~--p~----------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD--RK----------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHHHHHHHHHC--GG----------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC--CC----------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777666531 00 0026667777888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 340 LDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 340 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
.+.. +.+...+..+...+...|++++|+..+.
T Consensus 285 l~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 285 AALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7664 4455566666677777776666665443
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=6.3e-11 Score=119.80 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC---CCCCHHHHH
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSS----GPRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP---LKPDQKMFH 250 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~ 250 (599)
....+...|++++|++.|++..+. +..+ ...++..+...|...|++++|...+.+.++..... .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555667778888888888877653 1111 23466777777778888888888877776531111 011235667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCH
Q 007543 251 MMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ-PDVVSYALLINAYGKARRE 329 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~ 329 (599)
.+...|...|++++|+..|.+..+. .. +.+.. ....++..+...|...|++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~-------------------------~~---~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSM-------------------------AE---AEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HH---HTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH-------------------------HH---HcCChHHHHHHHHHHHHHHHHCCCH
Confidence 7777777788888887777766542 11 10000 0123566677777777777
Q ss_pred HHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 330 EEALAVFEEMLDA----GV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 330 ~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
++|+..|++..+. +. +....++..+...|.+.|++++|...+++..+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777776551 21 22344566666677777777777776666543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=4.4e-12 Score=123.76 Aligned_cols=179 Identities=18% Similarity=0.226 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc----CCC
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSS-------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE----KSP 241 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~ 241 (599)
..+|..+...|...|++++|+.+|+++.+. .......++..+...|...|++++|...++++++.. ...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 334455555555555555555555554431 111223345555555566666666666665554320 011
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007543 242 LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLIN 321 (599)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 321 (599)
.+....++..+...|...|++++|...|+++.+. .........+.....+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------------------------~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------------------------REKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------------------------HHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-------------------------HHHhcCCCChHHHHHHHHHHH
Confidence 1233567788888999999999999998877652 111111111123456788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 322 AYGKARREEEALAVFEEMLDA------GVRP-THKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
.|...|++++|+.+++++.+. +..| ...++..+...|...|++++|...|+++.+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988764 1122 344677888888889999999988888765
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=3.7e-11 Score=121.51 Aligned_cols=237 Identities=10% Similarity=-0.001 Sum_probs=137.2
Q ss_pred HHhcCChHHHHHHHHHHHhCC--C--CCCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCCCC---
Q 007543 148 YGKQGDFNKAEKVLSFMNKKG--Y--APSVVSHTALMEA--YGRGGRYKNAE-----------AIFRRMQSSGPRPS--- 207 (599)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g--~--~p~~~~~~~li~~--~~~~g~~~~A~-----------~l~~~m~~~g~~p~--- 207 (599)
+.+.+++++|..+++++.+.- . .++...|..++.. ....+.++.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 345777888888777765421 1 1223333443332 11223333333 55555543211101
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 208 -ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS-PLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 284 (599)
Q Consensus 208 -~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 284 (599)
...+......+...|++++|...|++.++.-.. +-.+ ...++..+...|...|++++|...+.+..+.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------- 172 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI--------- 172 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------
Confidence 011223556778899999999999999753111 1111 3467888999999999999999999877642
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 007543 285 NSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPT----HKAYNILLDAFA 359 (599)
Q Consensus 285 ~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~ 359 (599)
+...... ......+++.+...|...|++++|+..|++..+... .++ ..++..+...|.
T Consensus 173 ----------------~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 173 ----------------YKEHEAY-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp ----------------HHTCSTT-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------HHhCccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1110000 001235678888899999999999999988764310 111 135666677777
Q ss_pred HcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 360 ISGMVDQARTVFKCMRRD----RC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
..|++++|...|++..+. +. +....++..+...|.+.|++++|...+++..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777666541 11 2223445555555555666666665555544
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=2.5e-09 Score=107.51 Aligned_cols=276 Identities=9% Similarity=0.006 Sum_probs=179.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC--CHHHHHH
Q 007543 178 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL----TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP--DQKMFHM 251 (599)
Q Consensus 178 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ 251 (599)
.....+...|++++|...+++........+.. ++..+...+...|++++|.+.+++.+......-.+ ...++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556777777777777766543332322 34555566777778888777777766421100011 1234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ--P-DVVSYALLINAYGKARR 328 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~--~-~~~~~~~li~~~~~~g~ 328 (599)
+...+...|++++|...+++..+. . ...+.. | ....+..+...+...|+
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~-------------------------~---~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQL-------------------------I---NEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------------------------H---HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-------------------------H---HHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 778888999999999988877642 1 111111 2 23456677788889999
Q ss_pred HHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH-----HHHHHHHhcCC
Q 007543 329 EEEALAVFEEMLDAGVR----PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-DICSYT-----TMLSAYVNASD 398 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~-----~li~~~~~~g~ 398 (599)
+++|...+++....... ....++..+...+...|++++|...+++.......+ +...+. ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 99999999887654321 123567778888889999999999998876531111 111121 23344778899
Q ss_pred HHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCH-HHHHHHHHHHHhcCCHh
Q 007543 399 MEGAEKFFRRLKQDGFVP---NVITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPNQ-TIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~ 470 (599)
.++|...+++.......+ ....+..+...+...|++++|...+++... .+..++. ..+..+..++...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 999999998887543221 133566778888899999999999988763 2222232 26667778888999999
Q ss_pred HHHHHHHHHHh
Q 007543 471 SAVVWYKEMES 481 (599)
Q Consensus 471 ~A~~~~~~m~~ 481 (599)
+|...+++...
T Consensus 311 ~A~~~l~~al~ 321 (373)
T 1hz4_A 311 DAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=2.6e-11 Score=118.29 Aligned_cols=249 Identities=12% Similarity=0.139 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007543 207 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEK----SPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 282 (599)
Q Consensus 207 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 282 (599)
+..++..+...+...|++++|..+|+++++... ...+....++..+...|...|++++|...+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------- 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 456788889999999999999999999986200 012334577888999999999999999999887652
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 007543 283 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------GV-RPTHKAYNILL 355 (599)
Q Consensus 283 ~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~li 355 (599)
+........+....++..+...|...|++++|...++++.+. +- +.....+..+.
T Consensus 99 ------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 99 ------------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp ------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 222211111223467888999999999999999999998764 21 22345677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------CCCC----
Q 007543 356 DAFAISGMVDQARTVFKCMRRD------RCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDG-------FVPN---- 417 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~p~---- 417 (599)
..|...|++++|..+|+++.+. +..| ...++..+...|...|++++|...++++.+.. ..+.
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 8889999999999999887664 1122 23567777788888888888888888876421 1111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 418 ---VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 418 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
...+..+...+...+.+.++...+....... +.+..+|..+..+|.+.|++++|.+++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222223333444444555555554321 22344666677777777777777777766654
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=5.1e-09 Score=105.18 Aligned_cols=304 Identities=9% Similarity=0.034 Sum_probs=205.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHH
Q 007543 142 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV----SHTALMEAYGRGGRYKNAEAIFRRMQSSGP-RPSA----LTYQ 212 (599)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~ 212 (599)
..+...+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345566778999999999999987764222332 567778888999999999999998765321 1122 3356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccC-CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEK-SPLK--P-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 288 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 288 (599)
.+...+...|++++|...+++.++... .+.. | ...++..+...+...|++++|...+++........
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 168 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 168 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------
Confidence 677888999999999999998875321 1111 2 24566778889999999999999998877542110
Q ss_pred cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHHcC
Q 007543 289 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP-T-HKAYN----ILLDAFAISG 362 (599)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~-~~~~~----~li~~~~~~g 362 (599)
+......++..+...+...|++++|...+++.....-.+ . ..... ..+..+...|
T Consensus 169 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 169 -------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp -------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 111123567778888999999999999999886532111 1 11111 2334577899
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCH-HHHHHHHHHHHhcCCH
Q 007543 363 MVDQARTVFKCMRRDRCSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNV-ITYGTLIKGYAKVNNL 434 (599)
Q Consensus 363 ~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~ 434 (599)
++++|...+++.......+ ....+..+...+...|++++|...+++.... +..++. .++..+..++...|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 9999999998876543211 1335667778899999999999999987542 222222 3667778888999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 435 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
++|...+++..... +. ...+..+...| +....+++.+..
T Consensus 310 ~~A~~~l~~al~~~--~~----~g~~~~~~~~g--~~~~~ll~~~~~ 348 (373)
T 1hz4_A 310 SDAQRVLLDALKLA--NR----TGFISHFVIEG--EAMAQQLRQLIQ 348 (373)
T ss_dssp HHHHHHHHHHHHHH--HH----HCCCHHHHTTH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cc----ccHHHHHHHcc--HHHHHHHHHHHh
Confidence 99999999887421 00 11223333444 455566666655
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=6.8e-10 Score=98.82 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 394 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 394 (599)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555554432 3344455555555555555555555555554431 223444445555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544432 2244444455555555555555555555544331 2234444445555555555555555
Q ss_pred HHHHHH
Q 007543 475 WYKEME 480 (599)
Q Consensus 475 ~~~~m~ 480 (599)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=1.8e-09 Score=96.07 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007543 142 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 221 (599)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 221 (599)
..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|.+.++++.+..+ .+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 334444444444444444444443332 11334444444444444444444444444433211 1333333333344444
Q ss_pred CCHHHHHHHHHHhH
Q 007543 222 NKFKEAEEVFMTLL 235 (599)
Q Consensus 222 g~~~~A~~~~~~~~ 235 (599)
|++++|.+.++++.
T Consensus 90 ~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 90 QKYDLAVPLLIKVA 103 (186)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444333
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=3.2e-09 Score=106.94 Aligned_cols=237 Identities=11% Similarity=0.073 Sum_probs=160.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKS--PLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 290 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 290 (599)
.....+...|++++|...|+++++.... ..+....++..+...|...|++++|...+.+..+.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~--------------- 170 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------- 170 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---------------
Confidence 3445567889999999999998753111 00112457888999999999999999998877642
Q ss_pred cCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCC
Q 007543 291 ETNYKEVSKIYDQMQRAGL-Q-PDVVSYALLINAYGKARREEEALAVFEEMLDA----GVR-PTHKAYNILLDAFAISGM 363 (599)
Q Consensus 291 ~~~~~~a~~~~~~m~~~g~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~ 363 (599)
+.. .+. . ....+++.+...|...|++++|...|++..+. +-. ....++..+...|...|+
T Consensus 171 ----------~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 171 ----------YQN---HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ----------HHT---STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHh---CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 111 000 0 12456788899999999999999999887653 111 113467778888888999
Q ss_pred HHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCC-
Q 007543 364 VDQARTVFKCMRR-----DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNVITYGTLIKGYAKVNN- 433 (599)
Q Consensus 364 ~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~- 433 (599)
+++|...|++..+ .. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...|...++
T Consensus 238 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 9999988888766 32 223566777778888888888888888877642 112223345555566666677
Q ss_pred --HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 434 --LEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 434 --~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+++|...+++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 317 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 317 RKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666652 22333 33566777788888888888888877754
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=1.5e-08 Score=102.01 Aligned_cols=232 Identities=9% Similarity=0.021 Sum_probs=170.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 330 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (599)
....+...|++++|+..|++..+.... ++. .....++..+...|...|+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDD----------------------------IEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----------------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh----------------------------HHHHHHHHHHHHHHHHcCCcH
Confidence 445566778888888888777643100 000 012356788899999999999
Q ss_pred HHHHHHHHHHHCCC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 007543 331 EALAVFEEMLDAGV-RP-----THKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTMLSAYVNASDM 399 (599)
Q Consensus 331 ~A~~~~~~m~~~g~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~ 399 (599)
+|...+.+..+... .+ ...+++.+...|...|++++|...|++..+. +..+ ...++..+...|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 99999998865311 11 2447888999999999999999999987653 1111 235678888899999999
Q ss_pred HHHHHHHHHHhh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CcC-HHHHHHHHHHHHhcCC--
Q 007543 400 EGAEKFFRRLKQ-----DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI---KPN-QTIFTTIMDAYGKNKD-- 468 (599)
Q Consensus 400 ~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~-- 468 (599)
++|...+++..+ .. +....++..+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+
T Consensus 239 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999876 43 33477889999999999999999999999885311 122 3456777777788888
Q ss_pred -HhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 469 -FDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 469 -~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+.+|+.++++. +..|+. ..+..+...+...|++++|...+++..
T Consensus 318 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 318 KIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777763 233333 456678889999999999999998864
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.18 E-value=1e-07 Score=102.10 Aligned_cols=391 Identities=10% Similarity=0.084 Sum_probs=277.1
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 007543 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR---YKNAEAIFR 197 (599)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~l~~ 197 (599)
....++...... +.+...|..++..+.+.+.++.|..+|+.+... ++.+...|..-+..-.+.|. ++.+.++|+
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 344455555554 578899999999999999999999999999987 56688899999999999999 999999999
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHhHhccCCCC-CC-CHHHHHHHHHHHH---------
Q 007543 198 RMQSSGP-RPSALTYQIILKLFVEANKF--------KEAEEVFMTLLDEEKSPL-KP-DQKMFHMMIYMYK--------- 257 (599)
Q Consensus 198 ~m~~~g~-~p~~~t~~~ll~~~~~~g~~--------~~A~~~~~~~~~~~~~~~-~~-~~~~~~~li~~~~--------- 257 (599)
+.+...+ .|+...|...+....+.++. +...++|+.++.. .|. .+ ....|...+....
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~--vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK--CAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--TTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--hCcccccchHHHHHHHHHHHhccccCcHH
Confidence 9988642 47888999999888887775 3345788888763 344 33 4678888887654
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cC-------------CHHHHHHHHHHHHHc--CCC---------
Q 007543 258 KAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ET-------------NYKEVSKIYDQMQRA--GLQ--------- 310 (599)
Q Consensus 258 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~-------------~~~~a~~~~~~m~~~--g~~--------- 310 (599)
..++++.+.++|+.........-..+|...... .+ .+..|...+.++... ++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 344678899999998864222223444433322 11 123344444443321 111
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-
Q 007543 311 ------P-----D---VVSYALLINAYGKAR-------REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR- 368 (599)
Q Consensus 311 ------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~- 368 (599)
| + ...|...+..--..+ ..+.+..+|++.+..- +.+...|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 1 134555554433322 1344567888887763 668889999999889999999997
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------CCC------------HHHHHHHHHH
Q 007543 369 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF---------VPN------------VITYGTLIKG 427 (599)
Q Consensus 369 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~~~~~~li~~ 427 (599)
.+|++.... ++.+...|...+....+.|++++|.++|+++.+... .|+ ...|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999998864 455677788888899999999999999999876310 132 3467788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN-KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE 506 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 506 (599)
..+.|..+.|.++|.+..+.-..+....|...+..-.+. ++.+.|.++|+..++. ++-+...|..++......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 888999999999999998751122344554444333444 4599999999999875 45566777788888889999999
Q ss_pred HHHHHHhccCCCC
Q 007543 507 ANELLGNFNHPNN 519 (599)
Q Consensus 507 A~~~~~~~~~~~~ 519 (599)
|+.++++.....+
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999765554
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=3e-09 Score=98.74 Aligned_cols=152 Identities=13% Similarity=-0.003 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
|...+......+.+.|++++|+..|++.++...+++...+..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456666666677777777777777777665422566666666667777777777777777766542 224456666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNV-------ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---QTIFTTIMD 461 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~ 461 (599)
.|...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777777766543 2233 34666666666777777777777776643 343 345555555
Q ss_pred HHHhcC
Q 007543 462 AYGKNK 467 (599)
Q Consensus 462 ~~~~~g 467 (599)
++...|
T Consensus 162 ~~~~~~ 167 (228)
T 4i17_A 162 LFYNNG 167 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=1.3e-09 Score=118.08 Aligned_cols=165 Identities=17% Similarity=0.127 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+...|+.|...|.+.|++++|+..|++.++.. +-+..+|..+...|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45689999999999999999999999999875 5568899999999999999999999999998763 346789999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHh
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 470 (599)
+|...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+. .|+ ...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998865 337889999999999999999999999999975 454 779999999999999999
Q ss_pred HHHHHHHHHHh
Q 007543 471 SAVVWYKEMES 481 (599)
Q Consensus 471 ~A~~~~~~m~~ 481 (599)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=1.2e-09 Score=118.38 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=111.8
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
+...|+.|...|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++.++..+. +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 345677777777777777777777777776532 25667777777777777777777777777665433 5667777777
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
+|.+.|++++|++.|++.++.+ +.+...|+.+...|.+.|++++|++.|++..+..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~----P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------------------- 141 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------------------- 141 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------
Confidence 7777777777777777776543 4456677777777777777777777776665531
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+-+...+..+...|...|++++|.+.+++..+
T Consensus 142 -------------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 142 -------------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp -------------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -------------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 12445666667777777777777666666543
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=5.4e-09 Score=96.94 Aligned_cols=135 Identities=12% Similarity=-0.011 Sum_probs=113.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
.++..+..+...|.+.|++++|.+.|++..+...+++...|..+..++...|++++|++.|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999988764468888888999999999999999999999886544 667888899
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ-------KMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..+...|++++|.+.|++.++.. +.+. .+|..+...+...|++++|+..|++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999998753 3445 45777888888889999999888888764
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=4.2e-09 Score=101.94 Aligned_cols=194 Identities=13% Similarity=-0.002 Sum_probs=117.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 007543 322 AYGKARREEEALAVFEEMLDA----GVRPT-HKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTMLS 391 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~ 391 (599)
.|...|++++|...|.+..+. |-+++ ..+|+.+...|.+.|++++|+..|++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666665432 21111 345666666777777777777766665432 1000 1245667777
Q ss_pred HHHhc-CCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHH
Q 007543 392 AYVNA-SDMEGAEKFFRRLKQDGFV-PN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ------TIFTTI 459 (599)
Q Consensus 392 ~~~~~-g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l 459 (599)
.|... |++++|+..|++..+.... .+ ..++..+...|.+.|++++|...|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 8888888888877643110 01 346777888888888888888888888764322111 156667
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHh--hcCcHHHHHHHHHhccCC
Q 007543 460 MDAYGKNKDFDSAVVWYKEMESCGFPPDQK------AKNILLSLAK--TADERNEANELLGNFNHP 517 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~~~~--~~g~~~~A~~~~~~~~~~ 517 (599)
..++...|++++|...+++..+ +.|+.. .+..++.++. ..+++++|...++++...
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 7778888888888888888776 444422 2333444453 456788888888776443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=6.7e-10 Score=106.31 Aligned_cols=216 Identities=13% Similarity=0.132 Sum_probs=147.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------GV-RPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
++........+....++..+...|...|++++|+..+++..+. +- +....++..+...|...|++++|...|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 30 DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4444443322234567888999999999999999999998754 21 2234578889999999999999999999
Q ss_pred HHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 373 CMRRD------R-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD------G-FVPNVITYGTLIKGYAKVNNLEKMM 438 (599)
Q Consensus 373 ~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~ 438 (599)
+..+. . .+....++..+...|...|++++|...++++.+. + .+....++..+...|...|++++|.
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88764 1 1223567888888999999999999999988754 1 1223567888999999999999999
Q ss_pred HHHHHHHHC-------CCCcC-HHHHHHHHHHHHhcCCHhHHHH------HHHHHHhCCCCCC-HHHHHHHHHHHhhcCc
Q 007543 439 EIYDKMRVN-------GIKPN-QTIFTTIMDAYGKNKDFDSAVV------WYKEMESCGFPPD-QKAKNILLSLAKTADE 503 (599)
Q Consensus 439 ~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 503 (599)
+.+++..+. ...+. ...|..+.......+....+.. .++.... ..|+ ..++..+..++...|+
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 190 TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCC
Confidence 999988752 11222 2244444444444333333222 2222111 1222 3457778889999999
Q ss_pred HHHHHHHHHhccCC
Q 007543 504 RNEANELLGNFNHP 517 (599)
Q Consensus 504 ~~~A~~~~~~~~~~ 517 (599)
+++|..++++..+.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886543
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=1.7e-09 Score=103.46 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEE----KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
..++..+...|...|++++|...++++++.. ....+....++..+...|...|++++|...|.+..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 114 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------- 114 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 4455566666666666666666666665421 0111234567888889999999999999998877642
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHH
Q 007543 284 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------G-VRPTHKAYNILLD 356 (599)
Q Consensus 284 ~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~ 356 (599)
++.......+....++..+...|...|++++|...+++..+. + .+....++..+..
T Consensus 115 -----------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 115 -----------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp -----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 222211111123567888899999999999999999998764 1 1223457888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhhCCCCCCHHHHH
Q 007543 357 AFAISGMVDQARTVFKCMRRD-------RCSPD-ICSYTTMLSAYVNASD------MEGAEKFFRRLKQDGFVPNVITYG 422 (599)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~ 422 (599)
.|...|++++|...|++..+. ...+. ...|..+...+...+. +..+...++..... .+....++.
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 256 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLR 256 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 999999999999999988753 11222 2233333333333222 33333333332221 123456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
.+...|.+.|++++|.++|++..+
T Consensus 257 ~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 257 SLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999999998875
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=2.2e-08 Score=83.47 Aligned_cols=130 Identities=22% Similarity=0.286 Sum_probs=111.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
.+..+...|...|++++|.++|+++.+.+ +.+...|..+...+...|++++|..+|+++...++ .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 46678889999999999999999988764 33788899999999999999999999999987653 36778888899999
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..|++++|.+.++++++.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998643 456788889999999999999999999988764
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=2.2e-08 Score=83.43 Aligned_cols=128 Identities=17% Similarity=0.252 Sum_probs=63.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444445555555555555444332 2234444444445555555555555555544432 2244445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555432 22344555555555555555555555555544
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=3.1e-07 Score=87.45 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHH
Q 007543 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-----DIC 384 (599)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~ 384 (599)
++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 3444444556666666666666666666654432 124445556666666666666666666666553 34 234
Q ss_pred HHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC---Cc-
Q 007543 385 SYTTMLSA--YVNAS--DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-----GI---KP- 451 (599)
Q Consensus 385 ~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~---~p- 451 (599)
+...++.+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +. .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 44444444 22223 666666666666543 344333333444666667777777766654421 00 12
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 452 NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
|..+...+|......|+ +|.+++.++.+ ..|+.
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 34455444444444555 66666666666 34444
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=4e-08 Score=89.69 Aligned_cols=175 Identities=14% Similarity=0.056 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhCC
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI----------------LLDAFAISGMVDQARTVFKCMRRDR 378 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~ 378 (599)
.+......+.+.|++++|+..|++.++.. +.+...|.. +...|.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566778888889998888887763 223445555 8888999999999999999888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHHH
Q 007543 379 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN--LEKMMEIYDKMRVNGIKPNQTIF 456 (599)
Q Consensus 379 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~ 456 (599)
+.+...+..+...+...|++++|...|++..+.. +-+..++..+...|...|. .+.+...++.... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 4467888888999999999999999999988765 3477888888888876653 3445556655541 22223334
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 457 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 496 (599)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 496 (599)
.....++...|++++|+..|++.++ +.|+......+..
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4455666778999999999999988 6788765554443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=3e-08 Score=94.01 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC-CHHH
Q 007543 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SP-DICS 385 (599)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~ 385 (599)
.+...+-.+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|...|++..+... .| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356667778888889999999999999998764 333 56788888899999999999999998887521 12 2456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 007543 386 YTTMLSAYVN--------ASDMEGAEKFFRRLKQDGFVPNVITY-----------------GTLIKGYAKVNNLEKMMEI 440 (599)
Q Consensus 386 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A~~~ 440 (599)
+..+..++.. .|++++|...|+++.+.... +.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7777778888 89999999999998865321 22222 4568889999999999999
Q ss_pred HHHHHHCCCCcC----HHHHHHHHHHHHhc----------CCHhHHHHHHHHHHhCCCCCCH
Q 007543 441 YDKMRVNGIKPN----QTIFTTIMDAYGKN----------KDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 441 ~~~m~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
|+++.+. .|+ ...+..+..+|... |++++|...++++.+ ..|+.
T Consensus 171 ~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 171 YEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 9998864 233 34677777888766 889999999999987 34554
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=8.7e-08 Score=92.57 Aligned_cols=167 Identities=7% Similarity=0.018 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCC-CC---
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVR-PT----HKAYNILLDAFAIS-GMVDQARTVFKCMRRDRCS-PD--- 382 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-p~--- 382 (599)
..+|+.+..+|.+.|++++|+..|++.++.... .+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 457888999999999999999999988653211 11 35788899999996 9999999999987753110 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-
Q 007543 383 -ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV------ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT- 454 (599)
Q Consensus 383 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 454 (599)
..++..+...+...|++++|+..|++..+....... ..|..+..++...|++++|...|++..+. .|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCC
Confidence 356888899999999999999999999875433221 25778888999999999999999998743 34321
Q ss_pred -----HHHHHHHHHH--hcCCHhHHHHHHHHHHh
Q 007543 455 -----IFTTIMDAYG--KNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 -----~~~~li~~~~--~~g~~~~A~~~~~~m~~ 481 (599)
.+..++.++. ..+++++|+..|+++..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 3445566664 45778888888877754
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=1.1e-07 Score=90.08 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=117.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS---VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PS-ALT 210 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~t 210 (599)
.+...+..+...+.+.|++++|...|+++.+... .+ ..++..+..+|.+.|++++|+..|++..+..+. |. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4566677788888888889999988888887632 13 677888888888888999998888888875432 22 445
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHhHhccCCCCCCCHHHH-----------------HHHHHHHHHcCCHHHH
Q 007543 211 YQIILKLFVE--------ANKFKEAEEVFMTLLDEEKSPLKPDQKMF-----------------HMMIYMYKKAGGYEKA 265 (599)
Q Consensus 211 ~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~A 265 (599)
+..+..++.. .|++++|...|+++++.. +.+.... ..+...|.+.|++++|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY----PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 6677777777 888888888888888643 2122222 3445566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHH
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA----------RREEEALAV 335 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------g~~~~A~~~ 335 (599)
+..|+++.+.. |+ .......+..+..+|... |++++|...
T Consensus 168 ~~~~~~~l~~~--p~----------------------------~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 168 AVTYEAVFDAY--PD----------------------------TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHC--TT----------------------------STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CC----------------------------CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 66666665431 10 001234566666777655 788889988
Q ss_pred HHHHHHC
Q 007543 336 FEEMLDA 342 (599)
Q Consensus 336 ~~~m~~~ 342 (599)
|+++++.
T Consensus 218 ~~~~~~~ 224 (261)
T 3qky_A 218 YERLLQI 224 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.90 E-value=3.1e-06 Score=87.84 Aligned_cols=341 Identities=10% Similarity=0.001 Sum_probs=209.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH----HcCCH
Q 007543 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSS-GPRP-SALTYQIILKLFV----EANKF 224 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-~~~t~~~ll~~~~----~~g~~ 224 (599)
|+++.+..+|++.... .|++..|..-+.-..+.+. .+....+|+..+.. |..| +...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888887774 4688888877777766663 34556677766543 4333 5566666665543 34567
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 007543 225 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK-------------AGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 291 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 291 (599)
+.+.++|++++.. +...-...|......-.. .+.+..|..+++.+...-...+...|...+...
T Consensus 106 ~~vR~iy~rAL~~---P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 106 EKIRNGYMRALQT---PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 7788888888742 111112223322221111 123334455554443210001333555554431
Q ss_pred -CC---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 007543 292 -TN---------YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 361 (599)
Q Consensus 292 -~~---------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (599)
++ .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.+.. +.+...|.. |+..
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhh
Confidence 11 345678899988764 446788888888889999999999999999987 444333332 2222
Q ss_pred CCHHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 362 GMVDQARTVFKCMRRDR---------CSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 362 g~~~~A~~~~~~m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
...++. ++.+.+.- ..+ ....|...+..+.+.++.+.|..+|++. +.. ..+...|......-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 111111 22222110 001 1245666777777788899999999999 322 234555543333333
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHH
Q 007543 430 KVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEAN 508 (599)
Q Consensus 430 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 508 (599)
+.+ +.+.|..+|+...+.- +-+...|..+++...+.|+.+.|..+|+++. .....|...+..-...|+.+.++
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 334 6999999999998642 2235667778888889999999999999972 24677888888888889999999
Q ss_pred HHHHhcc
Q 007543 509 ELLGNFN 515 (599)
Q Consensus 509 ~~~~~~~ 515 (599)
.++++..
T Consensus 405 ~v~~~~~ 411 (493)
T 2uy1_A 405 ELVDQKM 411 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=6.6e-08 Score=88.23 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA----------------LMEAYGRGGRYKNAEAIFRRMQSSGP 204 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~ 204 (599)
+......+.+.|++++|...|++..+... .+...|.. +..+|.+.|++++|+..|++..+..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 33445566677777777777777766521 13344444 66666666666666666666665433
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 205 RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 205 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
. +...+..+...+...|++++|...|+++++.+ +.+..++..+...|...|
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHh
Confidence 2 55566666666666666666666666666543 344555655555554443
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=3.4e-07 Score=83.71 Aligned_cols=176 Identities=17% Similarity=0.074 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG----MVDQARTVF 371 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 371 (599)
+|.+.|++..+.| +...+..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666654 67788888888989999999999999998865 66777788888877 6 899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007543 372 KCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFV-PNVITYGTLIKGYAK----VNNLEKMMEIYD 442 (599)
Q Consensus 372 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 442 (599)
++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++++|.+.|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9988765 67788888888877 78999999999998887521 126788888888888 788999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHhCC
Q 007543 443 KMRVNGIKPNQTIFTTIMDAYGKN-K-----DFDSAVVWYKEMESCG 483 (599)
Q Consensus 443 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 483 (599)
+..+. ..+...+..|...|... | ++++|..++++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98876 23445666677777543 3 8999999999988866
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=3.7e-08 Score=107.12 Aligned_cols=184 Identities=11% Similarity=-0.029 Sum_probs=135.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 324 GKARREEEALAVFEEML--------DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 395 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 395 (599)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888888888887 432 4456677888888888888888888888887653 3466778888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHH
Q 007543 396 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 475 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (599)
.|++++|...|++..+.. +-+...|..+..+|.+.|++++ .+.|++..+.+ +-+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888887764 2366778888888888888888 88888887643 33466888888888888888888888
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHhhcC--------cHHHHHHHHHhc
Q 007543 476 YKEMESCGFPPDQ-KAKNILLSLAKTAD--------ERNEANELLGNF 514 (599)
Q Consensus 476 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g--------~~~~A~~~~~~~ 514 (599)
|+++.+ +.|+. ..+..+..++...+ ++++|.+.+..+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888877 45664 45656666655433 355666666554
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.85 E-value=1.3e-07 Score=90.06 Aligned_cols=181 Identities=11% Similarity=0.066 Sum_probs=137.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 332 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888887765 56777777888999999999999999999876543 2366778888999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 411 QDGFVP-----NVITYGTLIKGY--AKVN--NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 411 ~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+. .| +..+...|+.++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 356666666663 3334 899999999999764 46644444455589999999999999997754
Q ss_pred C-----CC----CCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 482 C-----GF----PPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 482 ~-----g~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
. +. +-+..++..++......|+ +|.+++.++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 2 11 3345666567666666787 88999998865554
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=1.4e-06 Score=90.35 Aligned_cols=335 Identities=13% Similarity=0.066 Sum_probs=208.9
Q ss_pred hcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHH
Q 007543 150 KQG-DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK-FKEA 227 (599)
Q Consensus 150 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~A 227 (599)
+.| +++.|+.+|+.+... -|. |+++.+..+|++.... .|+...|...++...+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488899999988764 233 8899999999999874 5799999999988877774 4567
Q ss_pred HHHHHHhHhccCCCC-CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc------------
Q 007543 228 EEVFMTLLDEEKSPL-KPDQKMFHMMIYMYK----KAGGYEKARKLFALMAERGVQQSTVTYNSLMSF------------ 290 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~------------ 290 (599)
..+|+.++.. .|. ..+...|...+..+. ..++.+.+.++|+.........-...|......
T Consensus 68 ~~~fe~al~~--vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQ--FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHH--STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHH--cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHH
Confidence 7888888753 222 446788888887764 356788999999999874222112233322221
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 291 ----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR--R-----EEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 291 ----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
...+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 1122334444444443110113345655554433221 1 345778999988764 667888988888899
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHhhCC-----C---CCCHHHHHHHHHHHHh
Q 007543 360 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA-EKFFRRLKQDG-----F---VPNVITYGTLIKGYAK 430 (599)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~-----~---~p~~~~~~~li~~~~~ 430 (599)
+.|+.++|..+|++.... +.+...|. .|....+.++. ..+.+...... . ......|...+..+.+
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999999999987 43433332 22222111111 11222111000 0 1112456667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHH
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK-DFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANE 509 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 509 (599)
.+.++.|.++|++. ... ..+..+|......-...+ +.+.|..+|+...+. .+-+...|...++...+.|+.+.|+.
T Consensus 299 ~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999999999 321 234555543333223333 699999999999874 23345566777888889999999999
Q ss_pred HHHhc
Q 007543 510 LLGNF 514 (599)
Q Consensus 510 ~~~~~ 514 (599)
++++.
T Consensus 376 l~er~ 380 (493)
T 2uy1_A 376 LFKRL 380 (493)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 99997
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=6.7e-08 Score=105.06 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=70.1
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 007543 184 GRGGRYKNAEAIFRRMQ--------SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 255 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (599)
...|++++|++.|++.. +.. ..+...+..+..++...|++++|.+.|+++++.+ +.+...|..+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV----GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----cchHHHHHHHHHH
Confidence 34445555555555544 221 1133444444455555555555555555554432 3344455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV 335 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (599)
|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++ +..
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~---------------------------------P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTF---------------------------------PGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS---------------------------------TTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------------------------CCChHHHHHHHHHHHHcCChHH-HHH
Confidence 555555555555555544321 1123334444444444454444 444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 336 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
|++.++.+ +.+...|..+..+|.+.|++++|...|++..
T Consensus 523 ~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 523 YQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 44444432 3334444444445555555555555554444
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=4.9e-06 Score=79.99 Aligned_cols=219 Identities=5% Similarity=-0.014 Sum_probs=132.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---C
Q 007543 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG--RYKNAEAIFRRMQSSGPRPSALTYQIILKLF----VEA---N 222 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~---g 222 (599)
...++|+++++.+...... +..+|+.--..+...| ++++++++++.+....++ +..+|+.--..+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 3346888888888876433 6777888888888888 888999988888886655 455555544444 444 6
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE--KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKI 300 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~ 300 (599)
++++++++++.+++.+ +.+..+|+.-...+.+.|.++ ++++.++++.+..
T Consensus 125 ~~~~EL~~~~~~l~~~----pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d------------------------ 176 (306)
T 3dra_A 125 DPYREFDILEAMLSSD----PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD------------------------ 176 (306)
T ss_dssp CTHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC------------------------
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC------------------------
Confidence 7888888888888754 667788887777777777776 7777777776542
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 007543 301 YDQMQRAGLQPDVVSYALLINAYGKARR------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ-ARTVFKC 373 (599)
Q Consensus 301 ~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 373 (599)
..|...|+.-...+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|+... +..+..+
T Consensus 177 ---------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 177 ---------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp ---------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred ---------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 2244445444444444443 566666666666554 4555666666555555554322 2233333
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 374 MRRDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 374 m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
+...+ -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 32211 12233444444444444444444444444444
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=6.9e-07 Score=81.64 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 007543 330 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS----DMEGAEKF 405 (599)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~ 405 (599)
.+|++.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 78888899999999999999999999998875 77888888888887 6 89999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGK----NKDFDSAVVWY 476 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~ 476 (599)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 77788888888887 88999999999999876521 126788888888888 88999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhc-C-----cHHHHHHHHHhccCCCC
Q 007543 477 KEMESCGFPPDQKAKNILLSLAKTA-D-----ERNEANELLGNFNHPNN 519 (599)
Q Consensus 477 ~~m~~~g~~p~~~~~~~ll~~~~~~-g-----~~~~A~~~~~~~~~~~~ 519 (599)
++..+. +.+...+..|...|... | +.++|..++++..+.+.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999885 34555677777776543 3 89999999998765554
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=2.2e-07 Score=89.44 Aligned_cols=167 Identities=8% Similarity=0.013 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345567777788888888888888888887764 556778888888888888888888888887654 3454433333
Q ss_pred HH-HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcC
Q 007543 390 LS-AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGKNK 467 (599)
Q Consensus 390 i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g 467 (599)
.. .+...++.++|...+++..... +.+...+..+...|...|++++|...|.++.+..-. .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22 4666777777888888877654 346777888888888888888888888888764211 12557788888888888
Q ss_pred CHhHHHHHHHHHH
Q 007543 468 DFDSAVVWYKEME 480 (599)
Q Consensus 468 ~~~~A~~~~~~m~ 480 (599)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888777654
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=6.7e-06 Score=79.00 Aligned_cols=220 Identities=8% Similarity=0.041 Sum_probs=138.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH----HHc-
Q 007543 187 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN--KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY----KKA- 259 (599)
Q Consensus 187 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 259 (599)
...++|++++++++..++. +...|+.--..+...+ +++++++.++.++... +.+..+|+.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cccHHHHHHHHHHHHHHHHhcc
Confidence 3446788888888775544 5556677666777777 7888888888877643 44555665544433 333
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHH
Q 007543 260 --GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE--EALAV 335 (599)
Q Consensus 260 --g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~ 335 (599)
+++++++.+++++.+. . +.+..+|+.-...+.+.|.++ ++++.
T Consensus 122 ~~~~~~~EL~~~~~~l~~--------------------------------~-pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSS--------------------------------D-PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp TCCCTHHHHHHHHHHHHH--------------------------------C-TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh--------------------------------C-CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 4555555555555443 2 346667777777777777777 88888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHH
Q 007543 336 FEEMLDAGVRPTHKAYNILLDAFAISGM------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG-AEKFFRR 408 (599)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~ 408 (599)
++++++.. +.|...|+.-...+.+.|. ++++++.+++++... +-|...|+.+-..+.+.|+... +..+..+
T Consensus 169 ~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 169 VDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 88888776 5677777766666666665 677777777666543 3466667666666666665333 3345554
Q ss_pred HhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 409 LKQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 409 m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
+.+.+ -..+...+..+++.|.+.|+.++|.++++.+.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44322 123556666666666666666677777666664
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=8.5e-08 Score=84.86 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL-FV 219 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~ 219 (599)
+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++.....+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4456666777777777777777766542 22566777777777777777777777777655433 43333222111 11
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..+....|...+++.++.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN----PDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 2222334566666666432 345566666666677777777776666666543
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=7.9e-07 Score=82.07 Aligned_cols=205 Identities=15% Similarity=0.075 Sum_probs=112.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA-P-SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA--LTYQ 212 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 212 (599)
++..+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677778888888888888887765321 1 1356777788888888888888888888775443211 1333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 292 (599)
.+..++...+.. .+. .|..+...+...|++++|...|+++.+.... +...+......
T Consensus 83 ~~g~~~~~~~~~-----~~~---------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l-- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ---------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL-- 139 (225)
T ss_dssp HHHHHHHHHHC----------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH--
T ss_pred HHHHHHHhhhhh-----hhh---------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH--
Confidence 344444332110 000 0111222223344555555555555443211 11111111100
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH---KAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~ 369 (599)
..+...+. .....+...|.+.|++++|+..|+++++.. +.+. ..+..+..+|.+.|+.++|..
T Consensus 140 -----~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 140 -----VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -----HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00000000 012345677888889999999998888763 2222 467778888888999999998
Q ss_pred HHHHHHhCC
Q 007543 370 VFKCMRRDR 378 (599)
Q Consensus 370 ~~~~m~~~~ 378 (599)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 888887753
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=2.3e-07 Score=90.30 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=110.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 007543 321 NAYGKARREEEALAVFEEMLDAGV---RP--THKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTML 390 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li 390 (599)
..|...|++++|...|.+..+... .+ -..+|+.+...|.+.|++++|+..|++..+. |-.. -..+++.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666777777776666543210 00 1235666667777777777777777765432 1110 124566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFV---P--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIM 460 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li 460 (599)
..|.. |++++|+..|++..+.... + ...++..+...|.+.|++++|.+.|++..+. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 67777 8888888888776542100 0 1456777888888888888888888887642 21111 22566666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCC----H--HHHHHHHHHHhhcCcHHHHHH
Q 007543 461 DAYGKNKDFDSAVVWYKEMESCGFPPD----Q--KAKNILLSLAKTADERNEANE 509 (599)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~--~~~~~ll~~~~~~g~~~~A~~ 509 (599)
.++...|++++|...+++.. . .|+ . .....++.++ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 67777788888888888876 3 232 1 1233444444 5667666665
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=3.2e-07 Score=88.30 Aligned_cols=178 Identities=10% Similarity=0.025 Sum_probs=128.4
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 123 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
.+.+++.... +.+...+..+...+.+.|++++|...|++..+... .+...+..+...|.+.|++++|...+++....
T Consensus 104 ~l~~~l~~~l--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 104 AIRALLDXVL--PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHS--CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHc--CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444444432 34456677888888999999999999999887642 36788889999999999999999999988765
Q ss_pred CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 007543 203 GPRPSALTY-QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 281 (599)
Q Consensus 203 g~~p~~~t~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 281 (599)
. |+.... ......+...++.+.|.+.+++.+... +.+...+..+...|...|++++|+..|.++.+... +
T Consensus 181 ~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~----P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p--~- 251 (287)
T 3qou_A 181 D--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN----PEDAALATQLALQLHQVGRNEEALELLFGHLRXDL--T- 251 (287)
T ss_dssp G--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T-
T ss_pred h--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC----CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--c-
Confidence 3 444332 223334667778888888888887654 56778888889999999999999988888876521 1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 282 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEML 340 (599)
Q Consensus 282 ~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (599)
..+...+..++..|...|+.++|...|++..
T Consensus 252 ----------------------------~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 252 ----------------------------AADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp ----------------------------GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------------cccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 0124566777777777777777777776654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=1.1e-07 Score=84.06 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA-YV 394 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~ 394 (599)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566777778888887777766543 4456677777777777788888877777765542 344333222211 11
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHhHHH
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-NQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 473 (599)
..+...+|...+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222234566666666543 2256667777777777777777777777776543211 2446667777777777777777
Q ss_pred HHHHHHH
Q 007543 474 VWYKEME 480 (599)
Q Consensus 474 ~~~~~m~ 480 (599)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=9.5e-08 Score=82.05 Aligned_cols=139 Identities=9% Similarity=0.018 Sum_probs=101.1
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.++.++|.+.++...... +-++..+..|..+|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|+.
T Consensus 10 ~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHH
Confidence 345566666655554332 23345566788889999999999999998887643 378889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV-FMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
.|++..+..+. +..++..+...|.+.|++++|.+. ++++++.. |.+..+|......+...|+
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCc
Confidence 99988886543 677888888888888988776654 57777543 4566777776666666553
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=2.6e-07 Score=98.43 Aligned_cols=153 Identities=12% Similarity=-0.014 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 292 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 371 (599)
Q Consensus 292 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (599)
+++++|.+.+++..+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+...|...|++++|...|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56778888888877653 2356778888888888888888888888887764 456778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 007543 372 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV---NNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 372 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~ 448 (599)
++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8877653 3456778888888888888888888888887654 33677788888888888 88888888888887653
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=3.4e-08 Score=84.92 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=91.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 356 DAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 434 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 434 (599)
..+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3444556677777777766543 22 23345556667777777777777777777654 33677777788888888888
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHH-HHHHHhCCCCC-CHHHHHHHHHHHhhcCc
Q 007543 435 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW-YKEMESCGFPP-DQKAKNILLSLAKTADE 503 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 503 (599)
++|...|++..+.. +-+...|..+...|.+.|++++|.+. +++..+ +.| ++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 88888888777642 22466777777778888877765554 466766 344 34555555556655553
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=9.9e-07 Score=81.40 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH-HHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVR-P-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PDI-CSYTT 388 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~~ 388 (599)
...+..+...+.+.|++++|+..|+++++.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677778888888888887765311 1 1346666777788888888888888877764211 111 13333
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 389 MLSAYVN------------------ASDMEGAEKFFRRLKQDGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 389 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
+..++.. .|+.++|...|+++++.. |+ ...+..... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----H------HHHHHHH-----
Confidence 3334433 456666666666666542 22 111111100 0 0000000
Q ss_pred CcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 450 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ----KAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
......+...+.+.|++++|+..|+++.+ ..|+. ..+..+..++.+.|+.++|...++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456677788888888888888876 33432 346667778888888888888888765433
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=6.6e-07 Score=95.26 Aligned_cols=153 Identities=10% Similarity=-0.017 Sum_probs=116.0
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 116 KKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI 195 (599)
Q Consensus 116 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 195 (599)
+++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+... .+..+|..+...|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666777777666554 45677888999999999999999999999988743 3688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 007543 196 FRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA---GGYEKARKLFALM 272 (599)
Q Consensus 196 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m 272 (599)
|++..+..+. +...+..+..++.+.|++++|.+.|++.++.. +.+...+..+...+... |++++|.+.+++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999886543 67888899999999999999999999998753 45678888899999999 9999999999988
Q ss_pred HHcC
Q 007543 273 AERG 276 (599)
Q Consensus 273 ~~~g 276 (599)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8764
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=1.8e-06 Score=78.67 Aligned_cols=145 Identities=14% Similarity=0.045 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...|++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455566777778888877777663 4567777777778888888888888888777654 3467778888888888
Q ss_pred cCCHHHHHHHHHHHHHCC--------------CCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 431 VNNLEKMMEIYDKMRVNG--------------IKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~--------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
.|++++|.+.|++..+.. ..|+ ...+..+..++.+.|++++|...++++.+ +.|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~------- 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP------- 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG-------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc-------
Confidence 888888888888887642 1222 36788888899999999999999999987 45654
Q ss_pred HHHhhcCcHHHHHHHHHh
Q 007543 496 SLAKTADERNEANELLGN 513 (599)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~ 513 (599)
..+..+++...+.+
T Consensus 155 ----~~~~~~~a~~~~~~ 168 (213)
T 1hh8_A 155 ----RHSKIDKAMECVWK 168 (213)
T ss_dssp ----GGGHHHHHHHHHHT
T ss_pred ----ccchHHHHHHHHHh
Confidence 23456666666654
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=1.9e-05 Score=76.00 Aligned_cols=167 Identities=8% Similarity=-0.050 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTH------KAYNILLDAFAISGMVDQARTVFKCMRRDRC---SPD-- 382 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-- 382 (599)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 45566778889999999999999988775422 22 2234456667788899999999998875321 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQ---D-GFVP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN 452 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~ 452 (599)
..+|+.+...|...|++++|...|++..+ . +..+ ...+|..+...|.+.|++++|.+.+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888899999999999999998762 2 1111 1257888999999999999999999987642 11111
Q ss_pred -HHHHHHHHHHHHhcCCHhHH-HHHHHHHHh
Q 007543 453 -QTIFTTIMDAYGKNKDFDSA-VVWYKEMES 481 (599)
Q Consensus 453 -~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 481 (599)
..+|..+...|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788889999999999999 777777653
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=1e-06 Score=85.66 Aligned_cols=181 Identities=10% Similarity=0.017 Sum_probs=89.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHHcCCHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP----RP-SALTYQIILKLFVEANKFK 225 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~~~~~~g~~~ 225 (599)
.++++.|...|++. ...|...|++++|.+.|.+..+... .+ -..+|..+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666655543 3455666777777777766543211 00 1235556666666667777
Q ss_pred HHHHHHHHhHhccCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 007543 226 EAEEVFMTLLDEEKSPLKP--DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 303 (599)
Q Consensus 226 ~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~ 303 (599)
+|...|++.++.....-.+ -..+++.+...|.. |++++|+..|++..+. +..
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-------------------------~~~ 147 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-------------------------FEN 147 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-------------------------HHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-------------------------HHh
Confidence 7766666665421000011 12345555666655 6666666666555431 100
Q ss_pred HHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 304 MQRAGLQ-PDVVSYALLINAYGKARREEEALAVFEEMLDA----GVRPT-HKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 304 m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
.+.. ....++..+...|.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|...|++..
T Consensus 148 ---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 148 ---EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ---CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0000 01234555666666666666666666665432 10000 1133444444444555555555555544
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=2.2e-06 Score=77.96 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
.+..+...+...|++++|.+.|++.. .|+...|..+...|.+.|++++|++.|++..+..+ .+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 35567788889999999999998874 46888999999999999999999999999887653 36788889999999
Q ss_pred HcCCHHHHHHHHHHhHhccCCC-----------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 220 EANKFKEAEEVFMTLLDEEKSP-----------LKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~-----------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
..|++++|.+.|+++++..... ..| ...++..+...|.+.|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998642110 111 23778889999999999999999999988753
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=8.7e-06 Score=78.40 Aligned_cols=126 Identities=8% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcC-HHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRV----N-GIKPN-QTIFT 457 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~ 457 (599)
+...+...|++++|+..|++..+... .++ ..+|+.+...|...|++++|...|+++.+ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33344444555555555555544211 111 22455555566666666666666655542 1 11111 22555
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcC-cHHHHHHHHHhc
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMES----CGFPPD-QKAKNILLSLAKTAD-ERNEANELLGNF 514 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g-~~~~A~~~~~~~ 514 (599)
.+...|.+.|++++|+..+++..+ .+..+. ..+|..+..++.+.| .+++|...+++.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 566666666666666666655543 111222 344555555666666 346665555543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=2.4e-06 Score=74.02 Aligned_cols=130 Identities=16% Similarity=0.027 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|++.|++..+..+ .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 456678888999999999999999988764 33788999999999999999999999999988643 3678888899999
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--MMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
...|++++|.+.|+++++.. +.+...+. .++..+.+.|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998653 34555553 344457788999999998887653
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.58 E-value=1.6e-06 Score=71.67 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=82.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++.++..+. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 346677788888888888888888887764 336788888888888888888888888888776433 677788888888
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 253 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 253 (599)
...|++++|.+.|++.++.+ |.+...+..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~----P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD----PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC----cCCHHHHHHHH
Confidence 88888888888888887653 44555555443
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=4.8e-07 Score=86.74 Aligned_cols=195 Identities=9% Similarity=0.025 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+...|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55678888899999999999999999998874 5578899999999999999999999999998753 446788899999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
+|...|++++|...|++..+.+.. +...+...+....+ ..++ .-+..........+..+...+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 999999999999999988754211 10011111111111 1111 122223333445555555555333 3689999
Q ss_pred HHHHHHHHHhCCCCCCHHH-HHHHHHHHhhc-CcHHHHHHHHHhccCC
Q 007543 472 AVVWYKEMESCGFPPDQKA-KNILLSLAKTA-DERNEANELLGNFNHP 517 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~-g~~~~A~~~~~~~~~~ 517 (599)
|++.+++..+ ..|+... ...+...+.+. +.+++|.+++.+..+.
T Consensus 154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999998887 4666543 34444445554 7789999999987643
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=1.8e-05 Score=76.15 Aligned_cols=161 Identities=10% Similarity=-0.035 Sum_probs=122.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 007543 318 LLINAYGKARREEEALAVFEEMLDAGV-RPTH----KAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PD----ICSYT 387 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 387 (599)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346788999999999999999987431 2221 13445677777888999999999999874222 23 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcC-HHHH
Q 007543 388 TMLSAYVNASDMEGAEKFFRRLKQ----D-GFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPN-QTIF 456 (599)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~ 456 (599)
.+...|...|++++|+..|+++.+ . +..+. ..+|..+...|.+.|++++|.+.+++..+ .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999873 1 11222 34788999999999999999999998774 232333 5688
Q ss_pred HHHHHHHHhcCC-HhHHHHHHHH
Q 007543 457 TTIMDAYGKNKD-FDSAVVWYKE 478 (599)
Q Consensus 457 ~~li~~~~~~g~-~~~A~~~~~~ 478 (599)
..+..++.+.|+ +++|.+.+++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHH
Confidence 999999999995 6898876643
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=3.3e-06 Score=68.90 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=87.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...|...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|+.+|+++.+..+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4567778888888888899988888887753 33677888888888888888888888888877643 367778888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 259 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (599)
+...|++++|...|+++++.. +.+...+..+...+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 888888888888888887643 44555666665555443
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=7e-05 Score=72.75 Aligned_cols=173 Identities=8% Similarity=0.000 Sum_probs=119.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA-N-KFKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-g-~~~~A 227 (599)
.+..++|+++++++...... +..+|+.--..+...| .+++++++++.+....++ +..+|+.-...+... + +.+++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34456788888888887533 6778888877777778 489999999998887665 777787777777776 6 78888
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE--------KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
+++++.+++.+ +.|..+|+.-...+.+.|.++ ++++.++++.+.
T Consensus 145 L~~~~k~L~~d----pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------------------------ 196 (349)
T 3q7a_A 145 IEYIHGSLLPD----PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------------------------ 196 (349)
T ss_dssp HHHHHHHTSSC----TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh------------------------
Confidence 99998888643 667777776655555544443 455555444443
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARR-------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 363 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (599)
. ..|...|+.....+.+.++ ++++++.+++++... +-|...|+-+-..+.+.|+
T Consensus 197 --------d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 197 --------D-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp --------C-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred --------C-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 2 2366667666666666664 677888887777665 5667777766666665554
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=2.7e-06 Score=70.34 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..+......|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555666667777777777777666554 3356667777777777777777777777766542 23456677777777
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~ 481 (599)
...|++++|++.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777777766
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=4.4e-06 Score=68.11 Aligned_cols=113 Identities=20% Similarity=0.306 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555556666666666666666665443 2345566666666666666666666666666432 2345566666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 463 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
+...|++++|...++++.+.. +.+...+..+..++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 667777777777776666532 22334444444443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=1.4e-05 Score=76.96 Aligned_cols=173 Identities=11% Similarity=0.056 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA-----LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QK 247 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~ 247 (599)
.+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...+.+.++.......+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445556666777777777777666654322111 1233345556677888888888888775322222222 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 007543 248 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQP--DVVSYALLINAYGK 325 (599)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 325 (599)
+++.+...|...|++++|...|++..+. ++ .....+ ...++..+...|.+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~-------------------------~~---~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQ-------------------------LE---ALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HH---HSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HH---hcCccccchHHHHHhHHHHHHH
Confidence 7889999999999999999999887642 11 110001 12578888999999
Q ss_pred cCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 007543 326 ARREEEALAVFEEMLDAG----VRP-THKAYNILLDAFAISGMVDQA-RTVFKCMR 375 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 375 (599)
.|++++|+..+++..+.. ... -..+|..+...|.+.|++++| ...+++..
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999999999876431 111 155778888888888888888 66676654
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=2.2e-06 Score=73.34 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
...+..+...+.+.|++++|...|+++.... +-+...|..+..+|...|++++|.+.|++..+.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456666667777777777777777777654 3367777777777778888888888888777542 2235677777777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 463 YGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
|.+.|++++|...|++..+ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 8888888888888887777 456553
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.49 E-value=6.3e-06 Score=71.32 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 394 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 394 (599)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555556666666555555443 3344455555555555555555555555544431 223444444444444
Q ss_pred hcCCHHHHHHHHHHHhh
Q 007543 395 NASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~ 411 (599)
..|++++|...|++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45555555555444443
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.48 E-value=1.3e-06 Score=74.64 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
.|..+...+.+.|++++|+..|++.....+. +...|..+..+|...|++++|...|+++++.. +.+...|..+..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P~~~~~~~~lg~ 112 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----CCCcHHHHHHHH
Confidence 4444444444444444444444444443222 34444444444444444444444444444332 223344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007543 255 MYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~ 274 (599)
+|.+.|++++|+..|++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555444443
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=0.00011 Score=71.38 Aligned_cols=174 Identities=9% Similarity=0.033 Sum_probs=123.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc-C-C
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA-G-G 261 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 261 (599)
+.+..++|++++++++..++. +..+|+.--..+...| .++++++.++.++... +.+..+|+.-...+.+. + +
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n----PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN----LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHCCSC
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHhcCCC
Confidence 345567899999999987655 6667787777777888 5999999999998754 67788888877777766 6 7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------HHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE--------EEAL 333 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------~~A~ 333 (599)
+++++++++++.+.. +.|...|+--...+.+.|.+ .+++
T Consensus 141 ~~~EL~~~~k~L~~d---------------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD---------------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp CHHHHHHHHHHTSSC---------------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 778888777776542 22444444433333333333 4888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 334 AVFEEMLDAGVRPTHKAYNILLDAFAISGM-------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 398 (599)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 398 (599)
+.++++++.. +.|...|+.....+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|+
T Consensus 188 e~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 188 DWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 8999998876 6688888888777777775 678888888777653 4466777776666666554
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=3.2e-06 Score=70.04 Aligned_cols=119 Identities=11% Similarity=-0.011 Sum_probs=93.2
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
.+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|+..|++..+..+. +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 345667788888999999999999999988764 237888888889999999999999999988876433 677888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
.++...|++++|.+.|++.++.. +.+...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD----SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhc
Confidence 88999999999999998887643 334556666666666554
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=1.7e-06 Score=82.95 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|.+.++++++.. +.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 4455566666666666666666666666554322 55566666666666666666666666665432 345566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+..+|...|++++|...|.+..+
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666777776666666554
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.45 E-value=5.6e-06 Score=68.12 Aligned_cols=119 Identities=15% Similarity=0.061 Sum_probs=95.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...+...|++++|...|++..... +.+...|..+...+...|++++|++.+++..+..+ .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 4566778888889999999999999888763 33688888899999999999999999998887643 357788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 262 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 262 (599)
+...|++++|.+.|++.++.. +.+...+..+...+.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD----PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999888643 44667777788887777653
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.43 E-value=3.1e-06 Score=76.19 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=98.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 007543 324 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTMLSAYVNASD 398 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~ 398 (599)
...|++++|.++++.+... ......++..+...+...|++++|...+++.... +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777754444321 1234556677777777777777777777766541 1111 23456666777778888
Q ss_pred HHHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcC
Q 007543 399 MEGAEKFFRRLKQD----GFVP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNK 467 (599)
Q Consensus 399 ~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g 467 (599)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+. +-... ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888887776542 1111 2345677788888888888888888876631 21111 234577778888888
Q ss_pred CHhHHHHHHHHHHh
Q 007543 468 DFDSAVVWYKEMES 481 (599)
Q Consensus 468 ~~~~A~~~~~~m~~ 481 (599)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877754
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=5.1e-06 Score=81.79 Aligned_cols=133 Identities=15% Similarity=0.034 Sum_probs=113.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--------------VVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+...+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677899999999999999999999988643221 589999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 007543 203 GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA-RKLFALMAE 274 (599)
Q Consensus 203 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 274 (599)
.+. +...|..+..+|...|++++|...|+++++.. +.+..++..+...+.+.|+.++| ...|..|..
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 78899999999999999999999999998754 55778899999999999999998 456766654
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=4.7e-06 Score=68.58 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 445555555666666666666666655432 2355566666666666666666666666666432 22355666666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666665532 2244455555555555443
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=1.4e-06 Score=74.36 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM 252 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 252 (599)
...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|...|++++... +.+...+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~l 95 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHHH
Confidence 334445555555555555555555555543322 44455555555555555555555555555432 2334455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~ 274 (599)
..+|...|++++|...|++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=4.5e-06 Score=69.09 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
+...+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34555556666666666666666666665543 2255566666666666666666666666666432 224556666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhc
Q 007543 462 AYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTA 501 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 501 (599)
++.+.|++++|.+.+++..+. .|+ ...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence 666666666666666666552 232 23444444444443
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=2.1e-06 Score=75.71 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 007543 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG-YAKVNNL--EKM 437 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~A 437 (599)
.|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555544432 2344555555555666666666666666555433 2245555555555 5566665 666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 438 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
...|++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66666666432 22345566666666666666666666666665
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.38 E-value=3.6e-06 Score=75.76 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=114.5
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNK----KGYA-PSVVSHTALMEAYGRGGRY 189 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~ 189 (599)
.++++.|.++++.+.... ......+..+...|...|++++|...|++... .|.. ....+++.+...|...|++
T Consensus 5 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 467788888666664422 23466788899999999999999999998776 1111 1356788899999999999
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HHHHHHHHHHHHHcCC
Q 007543 190 KNAEAIFRRMQSS----GPRP--SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QKMFHMMIYMYKKAGG 261 (599)
Q Consensus 190 ~~A~~l~~~m~~~----g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 261 (599)
++|.+.+++..+. +..+ ....+..+...+...|++++|...+++.++.....-.+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999887653 2121 234677788889999999999999998874311111111 2346788889999999
Q ss_pred HHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAE 274 (599)
Q Consensus 262 ~~~A~~~~~~m~~ 274 (599)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=9e-06 Score=76.39 Aligned_cols=139 Identities=9% Similarity=-0.093 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHH
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN--VITYGTLIKG 427 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~ 427 (599)
.+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3455667788889999999999887764 3544466666668889999999999998665432 111 2367778899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNI 493 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 493 (599)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+...+..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~a 246 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAA 246 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHH
Confidence 9999999999999999875433254 34667777888999999999999999988 4566333333
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.34 E-value=5.2e-06 Score=73.09 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=67.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL-FVEANKF--KE 226 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~--~~ 226 (599)
..|++++|...|++..+.. +.+...|..+...|...|++++|+..|++..+..+. +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455666666666655542 225556666666666666666666666666554322 45555555555 5566665 66
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 227 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 227 A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
|...|+++++.. +.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD----SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666665432 334555666666666666666666666666554
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.33 E-value=1.6e-06 Score=74.09 Aligned_cols=97 Identities=8% Similarity=-0.042 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|.+.|++..... +.+...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3455566667777777777777777776654 3366777777777777788888888877777542 2345677777777
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 007543 463 YGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~ 481 (599)
|...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7788888888888877766
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.2e-05 Score=66.17 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555666667777777777777666543 3356667777777777777777777777776542 22355677777777
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~ 481 (599)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777765
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=1.5e-05 Score=78.36 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 445555555555555555555555555443 2245555556666666666666666666655432 22344555555555
Q ss_pred HhcCCHhHH-HHHHHHH
Q 007543 464 GKNKDFDSA-VVWYKEM 479 (599)
Q Consensus 464 ~~~g~~~~A-~~~~~~m 479 (599)
.+.|++++| ..+++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 555555555 2344444
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.31 E-value=1.5e-05 Score=74.93 Aligned_cols=190 Identities=9% Similarity=-0.026 Sum_probs=141.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCCCC---------------
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNIL-------LDAFAISGMVDQARTVFKCMRRDRCSPD--------------- 382 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 382 (599)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999998875 5566788777 4566666666666655555443 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--H
Q 007543 383 -------ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--Q 453 (599)
Q Consensus 383 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~ 453 (599)
....-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 2234456678889999999999999988754 544466667778899999999999998665431 121 3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 454 TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD--QKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
..+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...++++...++.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4778889999999999999999999986433254 345667778899999999999999998755554
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.3e-05 Score=66.18 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcC----HHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IKPN----QTIFT 457 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~ 457 (599)
..+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666777777777777777766654 3356667777777777777777777777766421 1111 23566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNI 493 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 493 (599)
.+..++...|++++|++.|++.++ ..||+.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 677777778888888888877766 4566655443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=3e-05 Score=62.28 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555666666677777777766666543 2356666666777777777777777777766542 2245666677777
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 007543 463 YGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~ 481 (599)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777766
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00012 Score=70.72 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 007543 329 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG--MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD-MEGAEKF 405 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 405 (599)
+++++.+++.+.... +.+..+|+.-...+.+.| .+++++.+++.+.+.. +.|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555554443 334445544444444444 2455555555555432 2344445444444444454 3555555
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAKV--------------NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN----- 466 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 466 (599)
+.++++..+ -|...|+.....+.+. +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 555554432 2444444444444333 23555555555555432 22344554443333333
Q ss_pred ------CCHhHHHHHHHHHHhCCCCCCHHHHHH--HH---HHHhhcCcHHHHHHHHHhccC
Q 007543 467 ------KDFDSAVVWYKEMESCGFPPDQKAKNI--LL---SLAKTADERNEANELLGNFNH 516 (599)
Q Consensus 467 ------g~~~~A~~~~~~m~~~g~~p~~~~~~~--ll---~~~~~~g~~~~A~~~~~~~~~ 516 (599)
+.++++++.++++.+ +.||. .|.. ++ .+....|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 335556666666655 34443 1211 11 112234555555555555543
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00074 Score=65.21 Aligned_cols=120 Identities=10% Similarity=0.069 Sum_probs=82.6
Q ss_pred hcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 150 KQGDF-NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR----------YKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 150 ~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
+.|.+ ++|+++++.+...... +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34444 4788888888877533 56667765444443333 57788888888776555 777777777677
Q ss_pred HHcC--CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Q 007543 219 VEAN--KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG-YEKARKLFALMAER 275 (599)
Q Consensus 219 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~ 275 (599)
...+ .+++++.+++.+++.+ +.|..+|+.-...+...|. ++++++.++++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d----prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 7777 3788888888888754 6677777777777777776 57777777777665
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=3.6e-05 Score=61.77 Aligned_cols=96 Identities=18% Similarity=0.092 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+...|++++|.+.|++..... +.+...|..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 445566777777788888888887777653 236677777777777778888888877777765432 566677777777
Q ss_pred HHcCCHHHHHHHHHHhHh
Q 007543 219 VEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~ 236 (599)
...|++++|.+.++..++
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777777764
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=1.1e-05 Score=66.34 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI--KPN----QTIFT 457 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 457 (599)
..+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666777777777777666543 33566666777777777777777777777664310 111 55667
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
.+...+...|++++|...++++.+ ..|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 777777777777777777777776 34565554444433
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=2.5e-05 Score=70.11 Aligned_cols=131 Identities=11% Similarity=-0.000 Sum_probs=97.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS---------------VVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456778888899999999999999887532211 2788889999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKAR-KLFALMAE 274 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 274 (599)
+ .+...+..+..++...|++++|.+.|++.++.. +.+..++..+...+...++.+++. ..|..+..
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 377888889999999999999999999988653 456778888888888877777766 45555544
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.2e-05 Score=64.52 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
.|..+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|...|++.++.+ +.+...+..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHH
Confidence 3444444444555555555555544443222 34444445555555555555555555554332 233444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007543 255 MYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~ 274 (599)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 55555555555555554443
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=2.5e-05 Score=64.45 Aligned_cols=96 Identities=17% Similarity=0.068 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTYQI 213 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~----~~t~~~ 213 (599)
.+..|...|.+.|++++|++.|++..+... .+..+|+.+..+|.+.|++++|++.|++.++..+. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344566777777777777777777766532 25667777777777777777777777776553211 11 124555
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 007543 214 ILKLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 214 ll~~~~~~g~~~~A~~~~~~~~~ 236 (599)
+..++...|++++|.+.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666666666666666654
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=2.5e-05 Score=67.72 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...|.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++|+..|++.++..+. +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45677888889999999999999999887642 37888999999999999999999999998886543 67788888889
Q ss_pred HHHcCCHHHHHHHHHHhHhcc
Q 007543 218 FVEANKFKEAEEVFMTLLDEE 238 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~ 238 (599)
|...|++++|.+.|++.++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999888653
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=1.5e-05 Score=67.27 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=75.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+.+.|++++|...|++...... .+...|..+..+|.+.|++++|+..|++.....+. +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3455677778888888888888888877642 36778888888888888888888888888876543 566777788888
Q ss_pred HHcCCHHHHHHHHHHhHhc
Q 007543 219 VEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~ 237 (599)
...|++++|.+.|+..++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888753
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=2.9e-05 Score=64.72 Aligned_cols=100 Identities=12% Similarity=-0.041 Sum_probs=76.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
.+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++..+..+. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 456677778888888888888888888877764 236778888888888888888888888888776433 667777788
Q ss_pred HHHHHcCCHHHHHHHHHHhHhc
Q 007543 216 KLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
.++...|++++|...|+++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888877653
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.19 E-value=2.4e-05 Score=65.97 Aligned_cols=99 Identities=11% Similarity=0.010 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|...|++++..+ +.+...+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 91 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHHH
Confidence 4557778888999999999999999999887543 78888999999999999999999999998754 556778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 252 MIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+..+|...|++++|...|++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=6e-05 Score=63.50 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=76.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 211 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 211 (599)
.+...+..+...+.+.|++++|.+.|++..+. .|+ ...|..+...|...|++++|+..+++..+..+. +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 34566777888888888888888888888776 345 577888888888888888888888887775332 56677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
..+..++...|++++|.+.|++.++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77778888888888888888888754
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=4.9e-05 Score=63.29 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
.+...|..+...+...|++++|+..|.+.....+. +...+..+..++...|++++|...++..++.. +.+...+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----chhHHHHH
Confidence 47889999999999999999999999999887543 68889999999999999999999999998754 55788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 251 MMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
.+...|...|++++|...|.+..+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=7.4e-05 Score=62.93 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 457 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 457 (599)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|.+.+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4555666666666677777777777766654 344 4566667777777777777777777766542 22456666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.+..++...|++++|...+++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777766
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=4.1e-05 Score=66.28 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...|..+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|+..|++.++.. +.+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD----PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 5678889999999999999999999999886543 78889999999999999999999999999754 556889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 252 MIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+...|.+.|++++|+..|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999998865
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=1.6e-05 Score=63.25 Aligned_cols=98 Identities=9% Similarity=-0.063 Sum_probs=59.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIILK 216 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 216 (599)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|++.|++..+..+. .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445566666666666666666666666543 225556666666666666666666666666654221 03555566666
Q ss_pred HHHHc-CCHHHHHHHHHHhHh
Q 007543 217 LFVEA-NKFKEAEEVFMTLLD 236 (599)
Q Consensus 217 ~~~~~-g~~~~A~~~~~~~~~ 236 (599)
.+... |++++|.+.++.++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 66666 666666666666654
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.13 E-value=5.1e-05 Score=68.09 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
..|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 567777777778888888888888777642 3346677777788888888888888888877632 33445566666666
Q ss_pred hhcCcHHHHH-HHHHhc
Q 007543 499 KTADERNEAN-ELLGNF 514 (599)
Q Consensus 499 ~~~g~~~~A~-~~~~~~ 514 (599)
...++.+++. ..++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6666666555 333333
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.12 E-value=1.9e-05 Score=62.88 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP--NQTIFTTIMDA 462 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~ 462 (599)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444444445555555555555444332 2234444444444444555555555554444331 11 23444444444
Q ss_pred HHhc-CCHhHHHHHHHHHHh
Q 007543 463 YGKN-KDFDSAVVWYKEMES 481 (599)
Q Consensus 463 ~~~~-g~~~~A~~~~~~m~~ 481 (599)
+.+. |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 455555554444443
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=2.8e-05 Score=63.88 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTYQ 212 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~----~~t~~ 212 (599)
..+..+...|...|++++|...|++..+.. +.+...|..+...|...|++++|...|++.....+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777888888888888888877653 336777778888888888888888888877664321 12 55667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
.+...+...|++++|.+.|+.+++. .|+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE-----HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 7777777788888888888777653 345444444433
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=4.4e-05 Score=62.35 Aligned_cols=94 Identities=9% Similarity=-0.040 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..|++..+..+. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4556677777788888888887777653 236777777777777788888888877777775433 56667777777777
Q ss_pred cCCHHHHHHHHHHhHh
Q 007543 221 ANKFKEAEEVFMTLLD 236 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~ 236 (599)
.|++++|...|+++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777764
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=4.5e-05 Score=62.29 Aligned_cols=95 Identities=8% Similarity=-0.097 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 255 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (599)
+..+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..|++.++.+ +.+...+..+...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 445566666777777777777777665433 56666777777777777777777777776543 4456667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 007543 256 YKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~ 275 (599)
|.+.|++++|+..|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776653
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=3.4e-05 Score=65.98 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=100.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----H
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA-PS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PS----A 208 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~ 208 (599)
..+..+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|.+.+++..+.... ++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45677888899999999999999887653100 11 247888899999999999999999987653111 11 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
..+..+...+...|++++|.+.+++.++... .+ ......++..+...|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4677788889999999999999988875311 11 111245677888899999999999999988764
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=0.00045 Score=70.22 Aligned_cols=194 Identities=9% Similarity=0.004 Sum_probs=112.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCH
Q 007543 321 NAYGKARREEEALAVFEEMLDAGVRPT----------------HKAYNILLDAFAISGMVDQARTVFKCMRRDR-CSPDI 383 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 383 (599)
..+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445666777777777777765431110 1235667777777777777777777654421 11111
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCC--C
Q 007543 384 ----CSYTTMLSAYVNASDMEGAEKFFRRLKQ----DGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRV--NGI--K 450 (599)
Q Consensus 384 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~ 450 (599)
.+.+.+-..+...|+.+.|..+++.... .+..+ -..++..+...|...|++++|..++++... .+. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1222222333455777777777776542 22222 245667777778888888888888777653 111 1
Q ss_pred cC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 451 PN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQ----KAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 451 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
+. ..+|..++..|...|++++|..++++.... .+..+. ..+..+...+...|++++|...+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 346777777788888888888887776431 111111 23445555667777777777666553
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.98 E-value=0.0002 Score=58.69 Aligned_cols=96 Identities=19% Similarity=0.090 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV---VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIIL 215 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll 215 (599)
+..+...+.+.|++++|...|++..+.... +. ..+..+..++.+.|++++|+..|++..+..+... ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566777778888888888877765321 22 4677777777888888888888887776543311 45666677
Q ss_pred HHHHHcCCHHHHHHHHHHhHhc
Q 007543 216 KLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
.++...|++++|...|+.+++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777778888888888777753
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=5.8e-05 Score=64.49 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
++..+...+...|++++|.+.+++..+. +-.+. ..++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4445555555566666666655554421 11111 2244555555566666666666665554
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=0.00011 Score=75.62 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=105.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--------------VVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
...+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34677889999999999999999999887532211 6899999999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK-LFALMA 273 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 273 (599)
+. +...|..+..+|...|++++|...|+++++.. +.+..++..+...+.+.++.++|.+ .+..|.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 78889999999999999999999999998643 4456678888889998888887764 444443
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00038 Score=70.77 Aligned_cols=212 Identities=11% Similarity=0.001 Sum_probs=134.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
...+.+.|++++|++.|.++.+......... ...+........ ....+..+...|.+.|++++|
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA-----AGASVDDKRRNE-----------QETSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS-----SSSSBCSHHHHH-----------HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhH-----HHHHHHHHHhhh-----------HHHHHHHHHHHHHHCCCHHHH
Confidence 4556778999999999888876532111000 000000000000 012356788889999999999
Q ss_pred HHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 007543 333 LAVFEEMLDAGV-RPTH----KAYNILLDAFAISGMVDQARTVFKCMRRD----RCSPD-ICSYTTMLSAYVNASDMEGA 402 (599)
Q Consensus 333 ~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 402 (599)
.+++..+...-- .++. .+.+.+-..+...|+.++|..+++..... +..+. ..++..+...|...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 998887754211 1122 12333334444568888888888776432 22232 45677788889999999999
Q ss_pred HHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCCHhH
Q 007543 403 EKFFRRLKQD----GFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN--QTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 403 ~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~ 471 (599)
..+++++... +-++ ...+|..++..|...|++++|..++++.... +.++. ...+..+...+...|++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 9998887532 1111 2456888888999999999999998887631 11111 2456777777888899999
Q ss_pred HHHHHHHHH
Q 007543 472 AVVWYKEME 480 (599)
Q Consensus 472 A~~~~~~m~ 480 (599)
|...+.+..
T Consensus 235 A~~~~~~a~ 243 (434)
T 4b4t_Q 235 AFSYFFESF 243 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887764
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.92 E-value=2.8e-05 Score=80.35 Aligned_cols=123 Identities=17% Similarity=0.040 Sum_probs=94.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
.+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+..+. +..++..+..+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34456677899999999999988864 336889999999999999999999999999987543 6788889999999999
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM--YKKAGGYEKARKLFAL 271 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~ 271 (599)
++++|.+.|+++++.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 89 ~~~eA~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHS----TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999998753 2233455555555 8888999999998873
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.92 E-value=1.5e-05 Score=64.70 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=53.1
Q ss_pred cCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKG--YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 228 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 228 (599)
.|++++|+..|++..+.+ -+.+...|..+...|...|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766653 1223456666777777777777777777777665433 4566666666777777777777
Q ss_pred HHHHHhHhc
Q 007543 229 EVFMTLLDE 237 (599)
Q Consensus 229 ~~~~~~~~~ 237 (599)
..|++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766653
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=0.00012 Score=72.82 Aligned_cols=122 Identities=8% Similarity=0.020 Sum_probs=98.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNK----------------KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
.+..+...|.+.|++++|.+.|++..+ .. +.+..+|+.+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 466788899999999999999998876 21 1246788889999999999999999999998865
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 267 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 267 (599)
+. +...|..+..+|...|++++|.+.|+++++.. +.+...+..+...+.+.++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67788888999999999999999999988653 4467777778888877777776654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.90 E-value=0.00012 Score=63.20 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
+...|..+..+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+ +.|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 34577788888888888888888888888653 33467888888888888888888888888887 456543
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.89 E-value=0.0001 Score=76.20 Aligned_cols=116 Identities=9% Similarity=-0.053 Sum_probs=93.1
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
...+++++|.+.++.+.+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+..+|..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 45678999999999888775 45688999999999999999999999999998753 3788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 007543 193 EAIFRRMQSSGPRPSALTYQIILKL--FVEANKFKEAEEVFM 232 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~A~~~~~ 232 (599)
++.|++..+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999886543 33344445444 888899999999998
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.89 E-value=0.00026 Score=57.97 Aligned_cols=90 Identities=9% Similarity=-0.018 Sum_probs=55.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMD 461 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~ 461 (599)
+...+...|++++|...|+++.+.... +. ..+..+..++.+.|++++|...|++..+.. |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344555666666666666666553211 22 355566666667777777777777766532 22 445666666
Q ss_pred HHHhcCCHhHHHHHHHHHHh
Q 007543 462 AYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~ 481 (599)
++...|++++|...++++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777777765
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=0.00016 Score=74.34 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLS 496 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 496 (599)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+ +.|+. ..+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4677788888888888888888888888653 33577888888888899999999999998887 45544 56777777
Q ss_pred HHhhcCcHHHHHH-HHHhcc
Q 007543 497 LAKTADERNEANE-LLGNFN 515 (599)
Q Consensus 497 ~~~~~g~~~~A~~-~~~~~~ 515 (599)
++.+.++.+++.+ ++++|.
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 8888888877764 455554
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=0.00015 Score=72.03 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007543 348 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 427 (599)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 427 (599)
...+..+...+.+.|++++|+..|++..+.- +.. ..... .++..+.. +-+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHH-HHHHHHHHHHHHH
Confidence 4457777778888888888888887776520 000 00001 11111111 2245677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCcHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTADERNE 506 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 506 (599)
|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|+..++++.+ +.| +...+..+..++...++.++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888643 23466788888888888888888888888877 344 45566666677777777766
Q ss_pred HHHH
Q 007543 507 ANEL 510 (599)
Q Consensus 507 A~~~ 510 (599)
+.+.
T Consensus 360 a~k~ 363 (370)
T 1ihg_A 360 KEKA 363 (370)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6543
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00015 Score=62.56 Aligned_cols=98 Identities=16% Similarity=0.043 Sum_probs=73.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKK--------G---------YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
..+......+.+.|++++|...|++.... . -+.+...|..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556778888888888888888877653 0 011345778888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 202 SGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 202 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
..+. +...|..+..+|...|++++|...|++.++.
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6433 6777888888888888888888888888754
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00025 Score=72.90 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=103.8
Q ss_pred CCCCCHHHHHHHHH----------HHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 007543 203 GPRPSALTYQIILK----------LFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 203 g~~p~~~t~~~ll~----------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+..++..++..++. .+...|++++|+.++++.++....-+.++ ..+++.|...|...|++++|+.+
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44556655544332 35578999999999999887544444443 46789999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC
Q 007543 269 FALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD-----AG 343 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g 343 (599)
+++..+ +++.......+-...+++.|...|...|++++|+.++++..+ .|
T Consensus 374 ~~~aL~-------------------------i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 374 ARRMVD-------------------------GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHH-------------------------HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-------------------------HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 987664 333333322222346789999999999999999999988753 23
Q ss_pred CC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 344 VR-PT-HKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 344 ~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
.. |+ ..+.+.+-.++...+.+++|..+|+.+.+
T Consensus 429 ~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 429 PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 22445666677777788888888887765
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.75 E-value=4.1e-05 Score=62.00 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHH
Q 007543 396 ASDMEGAEKFFRRLKQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (599)
.|++++|+..|++..+.+ -+-+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355566666666665542 12234456666666666666666666666666542 223556666666666666666666
Q ss_pred HHHHHHHh
Q 007543 474 VWYKEMES 481 (599)
Q Consensus 474 ~~~~~m~~ 481 (599)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=8e-05 Score=73.19 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=69.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV------------------SHTALMEAYGRGGRYKNAEAIFRRMQ 200 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------~~~~li~~~~~~g~~~~A~~l~~~m~ 200 (599)
..+..+...|.+.|++++|...|++.... .|+.. +|+.+..+|.+.|++++|+..|++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34667788888999999999999998765 24433 67777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 007543 201 SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM-YKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 201 ~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 274 (599)
+..+ .+...|..+..+|...|++++|...|+++++.. +.+..++..+... ....+..+++...|..|..
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~----p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA----PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6533 256677777777777777777777777776432 2233444444443 2233455566666666554
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.74 E-value=0.00044 Score=58.56 Aligned_cols=99 Identities=17% Similarity=0.115 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhc--cCCCC
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRP------S-----ALTYQIILKLFVEANKFKEAEEVFMTLLDE--EKSPL 242 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 242 (599)
+......+.+.|++++|++.|++.++..+.. + ...|..+..++.+.|++++|+..+++.++. ....+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344444445555555555555554432220 1 125556666666666666666666666543 00001
Q ss_pred -CCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 243 -KPDQKMF----HMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 243 -~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+.+...| .....++...|++++|+..|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3345667 7888888888888888888888764
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=0.0017 Score=68.38 Aligned_cols=174 Identities=10% Similarity=-0.004 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM----------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 397 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 397 (599)
..++|++.+++++... +-+..+|+.--..+...|+ +++++..++.+.+.. +.+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3568899999998875 5566677777777777776 899999999998764 557888888888888889
Q ss_pred --CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 007543 398 --DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN-------- 466 (599)
Q Consensus 398 --~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 466 (599)
+++++++.++++.+... -|..+|+.-...+.+.| .++++.+.++++.+.. +-|...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999998764 48889998888888989 8999999999998764 34677888777776653
Q ss_pred ------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHH
Q 007543 467 ------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE 506 (599)
Q Consensus 467 ------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 506 (599)
+.+++++++++++.... |-|...|.-+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999998742 4456778888888877776443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.68 E-value=0.00019 Score=73.87 Aligned_cols=135 Identities=10% Similarity=-0.003 Sum_probs=97.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCC---C-CHHHHH
Q 007543 182 AYGRGGRYKNAEAIFRRMQSS-----GP-RPS-ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK---P-DQKMFH 250 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~-~~~~~~ 250 (599)
.+...|++++|+.++++..+. |. .|+ ..+++.|..+|...|++++|+.++++.++....-+. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 21 222 357889999999999999999999988753211122 2 246789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 251 MMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 330 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (599)
.|...|...|++++|+.++++..+ +++.......+....+.+.+-.++...+.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~-------------------------i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYA-------------------------ILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------------------------HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-------------------------HHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987664 3333332222122334566777788888999
Q ss_pred HHHHHHHHHHH
Q 007543 331 EALAVFEEMLD 341 (599)
Q Consensus 331 ~A~~~~~~m~~ 341 (599)
+|+.+|..+++
T Consensus 453 ~ae~~~~~~~~ 463 (490)
T 3n71_A 453 QNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.0012 Score=55.00 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007543 363 MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMM 438 (599)
Q Consensus 363 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 438 (599)
++++|+..|++..+.| .|+.. +...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555444 22222 3334444445555555555555443 44455555555555 45556666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCC
Q 007543 439 EIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 483 (599)
+.|++..+.| +...+..|...|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666555543 34444555555555 556666666666655544
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=9e-05 Score=72.82 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007543 348 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 427 (599)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 427 (599)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455667777778888888888888887654 333321 122333333332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HhhcCcHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSL-AKTADERN 505 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~-~~~~g~~~ 505 (599)
|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+ +.|+. ..+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988653 33577888899999999999999999999877 45554 344444444 23456677
Q ss_pred HHHHHHHhccCCCC
Q 007543 506 EANELLGNFNHPNN 519 (599)
Q Consensus 506 ~A~~~~~~~~~~~~ 519 (599)
++..+++++....+
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 77888887764443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.0018 Score=54.06 Aligned_cols=110 Identities=10% Similarity=-0.035 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAE 403 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 403 (599)
++++|+..|++..+.| .++.. |...|...+.+++|...|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 33333 5555555556666666666666654 55666666666666 56777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007543 404 KFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 448 (599)
..|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766654 55666666666666 667777777777776665
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.64 E-value=0.0028 Score=66.68 Aligned_cols=173 Identities=10% Similarity=0.019 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR----------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG- 362 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 362 (599)
.++|.+.++.+.... +-+...|+.--.++.+.|+ ++++++.++.+.+.. +-+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345566666666653 2245566666666666666 899999999998876 667888888888888888
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---------
Q 007543 363 -MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--------- 431 (599)
Q Consensus 363 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 431 (599)
++++++..++++.+.. +-+...|+.-...+.+.| .++++++.++++++..+ -|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 7799999999998864 447888888888888888 89999999999988764 3888888888777763
Q ss_pred -----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 432 -----NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 432 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
+.++++.+.+++..... +-|...|.-+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999988653 3457889988888888877444
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.63 E-value=0.00063 Score=57.62 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP------SV-----VSHTALMEAYGRGGRYKNAEAIFRRMQSS-----G 203 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g 203 (599)
.+......+.+.|++++|...|++..+..... +. ..|+.+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34466778888999999999999888753220 22 38999999999999999999999999885 1
Q ss_pred CCC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 204 PRP-SALTY----QIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 204 ~~p-~~~t~----~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
+.| +...| .....++...|++++|+..|++.++.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 144 45577 88889999999999999999999863
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=9.4e-05 Score=58.81 Aligned_cols=68 Identities=10% Similarity=0.059 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 487 (599)
+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..++.+.|++++|+..+++..+ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCC
Confidence 45567777788888888888888888877642 33567788888888888888888888888877 4454
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.00066 Score=54.41 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 007543 156 KAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLL 235 (599)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 235 (599)
.|...|++..+.. +.+...|..+...|...|++++|+..|++..+..+. +...|..+..++...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555443 224555666666666666666666666665554322 44555555666666666666666666554
Q ss_pred h
Q 007543 236 D 236 (599)
Q Consensus 236 ~ 236 (599)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.40 E-value=0.0019 Score=48.78 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
.+..+...|.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|+..|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444555555555554444432 11344444444444444444444444444444
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00063 Score=53.81 Aligned_cols=61 Identities=15% Similarity=0.029 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
.+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34445555555555555555555554432 12444555555555555555555555555544
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.35 E-value=0.00045 Score=58.37 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN----------LEKMMEIYDKMRVNGIKPN-QTIFTTIMDAY 463 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 463 (599)
+.+.+++|.+.++...+.. +-+...|..+..++...++ +++|+..|++.++. .|+ ...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3345566666666665544 2355666666666665554 45777777777754 343 56777777777
Q ss_pred Hhc-----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 464 GKN-----------KDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 464 ~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
... |++++|++.|+++++ +.|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 765 478889999988888 67777666554443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.35 E-value=0.0026 Score=47.94 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...|..+...+...|++++|+..|++..+..+. +...+..+...+...|++++|.+.|++.++.. +.+...+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~ 82 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCHHHHHH
Confidence 4567888899999999999999999999876433 67788889999999999999999999998753 556778888
Q ss_pred HHHHHHHcC
Q 007543 252 MIYMYKKAG 260 (599)
Q Consensus 252 li~~~~~~g 260 (599)
+...+.+.|
T Consensus 83 l~~~~~~~g 91 (91)
T 1na3_A 83 LGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 888777654
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.0017 Score=51.90 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 200 (599)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 200 (599)
+.+.++.+.+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566665554 4667889999999999999999999999998874 3368899999999999999999999999987
Q ss_pred hC
Q 007543 201 SS 202 (599)
Q Consensus 201 ~~ 202 (599)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.18 E-value=0.0012 Score=55.86 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=65.6
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF----------NKAEKVLSFMNKKGYAPSVVSHTALMEAY 183 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 183 (599)
++..+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+.... +..+|+.+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3456677777777777665 45677777777777777664 4888888887776432 567788888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 184 GRGG-----------RYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 184 ~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
...| ++++|++.|++.++ +.|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 7664 67777777777776 345544444333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0017 Score=50.50 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=48.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
.+...+..+...|.+.|++++|...|++..+.... +...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566777777888888888888888877776422 566777788888888888888888777654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.002 Score=50.11 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 236 (599)
.+...|..+...|.+.|++++|++.|++..+..+. +...|..+..+|...|++++|.+.|++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36788999999999999999999999999887544 566888899999999999999999988874
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.85 E-value=0.0045 Score=62.45 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=73.4
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 295 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 295 (599)
..|++++|+.++++.++....-+.|+ ..+++.|...|...|++++|+.++++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 35789999999999887544444444 46789999999999999999999988764
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++.......+-...+++.|...|...|++++|+.++++..+
T Consensus 369 ----i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 ----PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ----HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333333222222345789999999999999999999988754
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.85 E-value=0.011 Score=59.54 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=77.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 007543 214 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 289 (599)
Q Consensus 214 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 289 (599)
.+..+.+.|++++|+.++++.++....-+.|+ ..+++.|...|...|++++|+.++++...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~--------------- 357 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME--------------- 357 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------
Confidence 34556678999999999999987544444444 46788999999999999999999987764
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 290 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 290 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++.......+....+++.|...|...|++++|+.++++..+
T Consensus 358 ----------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 ----------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333333222222345789999999999999999999988753
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.46 E-value=0.0051 Score=47.38 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=38.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 424 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
....+.+.|++++|.+.|++..+.. +.+.. .|..+..++...|++++|.+.|++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666777777777777776542 22455 667777777777777777777777766
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.43 E-value=0.041 Score=53.38 Aligned_cols=76 Identities=8% Similarity=-0.070 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 494 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 494 (599)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5578888888777777799999999999988764 7777888888888899999999999988888 67877776543
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.39 E-value=0.009 Score=45.91 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=46.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 205 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 205 (599)
.....+.+.|++++|.+.|++..+.. +.+.. .|..+..+|...|++++|++.|++..+..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34566777888888888888877763 22566 7888888888888888888888888775443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.34 E-value=0.017 Score=58.30 Aligned_cols=90 Identities=7% Similarity=-0.046 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC---CCC-HHHHHHHH
Q 007543 185 RGGRYKNAEAIFRRMQSS-----GP-RPS-ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL---KPD-QKMFHMMI 253 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~-~~~~~~li 253 (599)
..|++++|+.++++..+. |. .|+ ..+++.|..+|...|++++|+.+++++++....-+ .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987652 21 122 35788999999999999999999999875321111 233 46799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 007543 254 YMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~ 274 (599)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.31 E-value=0.022 Score=57.50 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQS-----SGP-RPS-ALTYQIILKLFVEANKFKEAEEVFMTLL 235 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 235 (599)
+++.|...|...|++++|+.++++.+. .|. .|+ ..+++.|...|...|++++|+.++++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444455555555555555554444432 111 111 1234444444444444444444444443
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.97 E-value=0.072 Score=44.37 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHhHH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKP--NQTIFTTIMDAYGKNKDFDSA 472 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 472 (599)
....+.+.|.+..+.+ .++..+.-.+..++++.+ ++++++.+|++..+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666777666666 368888888889999988 6679999999988754 34 244555666778999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q 007543 473 VVWYKEMESCGFPPDQKAKNIL 494 (599)
Q Consensus 473 ~~~~~~m~~~g~~p~~~~~~~l 494 (599)
.++++.+++ +.|+..--..|
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHH
Confidence 999999998 77865433333
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.72 Score=39.37 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=90.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 356 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 435 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 435 (599)
+...+.|+++.|.++.+++ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445778899988887766 2678899999999999999999999887653 345556667778887
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 436 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.-.++-+.....| -++.-...+.-.|+++++.+++.+.-+ .|. -+-.....|-.+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 7766666555444 234455566778999999988866532 121 122234577788888888876
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.84 E-value=0.071 Score=40.51 Aligned_cols=67 Identities=7% Similarity=-0.065 Sum_probs=39.5
Q ss_pred CCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 136 FNEMDFLMLITAYGKQGD---FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
.++..+..+..++...++ .++|..+|++..+.... ++.++..+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344555555555543333 56666666666665422 55666666666666666666666666666543
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.82 E-value=0.45 Score=52.26 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=21.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 149 GKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
...|++++|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555443222 14445555555555555555555555544
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.78 E-value=0.078 Score=41.23 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=51.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG------YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
.+..++..|...+.+.|++..|...|+...+.- -.+....+..|..+|.+.|++++|+..+++..+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 567778888888888888888888888766531 12356677888888888888888888888887643
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.75 E-value=0.63 Score=45.09 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC-C-HHHHH---HHHHHHHh-CCCCCCHHHHHHHHHHHHHcCC
Q 007543 154 FNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGR---GG-R-YKNAE---AIFRRMQS-SGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~---~g-~-~~~A~---~l~~~m~~-~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
..+|..+|++..+.. |+ ...|..+.-+|.. .+ . ..... ..+..... .....+..+|..+...+...|+
T Consensus 215 ~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 467888888887763 33 4455444443321 11 1 01111 11111111 1124577788877777777899
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 284 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 284 (599)
+++|...+++++.. .|+...|..+...+.-.|++++|.+.|++....+ |...+|
T Consensus 293 ~d~A~~~l~rAl~L-----n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 293 TDESYQAINTGIDL-----EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp HHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred HHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 99999999998864 3677777778888888999999999998887763 444443
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=0.2 Score=55.16 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 396 (599)
..++..+.+.|.+++|+++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 556666677777777776543211 1123345677788777775433 3667778888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
|+++.|.+.|.++.. |..+...|...|+.+...++-+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888877653 22344444445555554444444443
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.38 Score=41.09 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=69.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
.+...+.|+++.|.++.+++. +...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 445566788888888877662 677888888888888888888888877632 34455556667777
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 225 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
+.-.++-+.....+ -++.....+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g---------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc---------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76666555544321 144555556667888888777754
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.46 E-value=0.25 Score=37.40 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 170 APSVVSHTALMEAYGRGGR---YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
+.|...+..+..++...++ .++|..+|++..+..+. +......+...+.+.|++++|...|+.+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567777788777765544 68888888888886544 6777788888888888888888888888864
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.36 E-value=0.86 Score=36.66 Aligned_cols=141 Identities=9% Similarity=0.025 Sum_probs=91.5
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 297 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a 297 (599)
+.-.|..++..++..+... +.+..-||-+|--....-+-+-..++++.+-+. -| ++.+++.+.+
T Consensus 17 ~ildG~v~qGveii~k~~~------ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD-------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK------SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD-------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH------HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC-------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcC------CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------cHhhhcHHHH
Confidence 3445777788888777764 334444555554444555555555555544321 01 2346777776
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
..-+-.+- .+...+..-++.+...|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 66665542 34556677778888888888888888886543 3777888888888888888888888888888877
Q ss_pred CCC
Q 007543 378 RCS 380 (599)
Q Consensus 378 ~~~ 380 (599)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 753
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.09 E-value=0.2 Score=38.88 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG------IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
+..-+..|...+.+.|+++.|...|+...+.- -.+...++..+..++.+.|+++.|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 44445567777777777777777777766420 123355777788888888888888888888876 45554
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.71 E-value=0.23 Score=41.36 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG---RYKNAEAIFRRMQSSGPRP--SALTYQIILKLFVEANKFKEAE 228 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~ 228 (599)
+..+++-|.+....|. ++..+...+.-++++.+ ++++++.+|++..+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 46666666666666666 4456666666666543 12 2333444445566677777777
Q ss_pred HHHHHhHhc
Q 007543 229 EVFMTLLDE 237 (599)
Q Consensus 229 ~~~~~~~~~ 237 (599)
+.++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777666653
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.54 E-value=1.5 Score=35.31 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
....++.+...|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.++++++-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34444444555555555555554322 224444455555555555555555555555554444
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.98 E-value=0.22 Score=46.28 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHH
Q 007543 155 NKAEKVLSFMNKKGYAPS---VVSHTALMEAYGRG-----GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA-NKFK 225 (599)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~ 225 (599)
..|+..+++..+. .|+ -..|..|...|.+. |+.++|.+.|++.++.++.-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4444444444443 233 23455555555542 55555555555555433322244444444444442 5555
Q ss_pred HHHHHHHHhHh
Q 007543 226 EAEEVFMTLLD 236 (599)
Q Consensus 226 ~A~~~~~~~~~ 236 (599)
+|.+.+++.+.
T Consensus 258 ~a~~~L~kAL~ 268 (301)
T 3u64_A 258 GFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 55555555543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.32 E-value=0.58 Score=43.52 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhc-C
Q 007543 399 MEGAEKFFRRLKQDGFVPN---VITYGTLIKGYAKV-----NNLEKMMEIYDKMRVNGIKP--NQTIFTTIMDAYGKN-K 467 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~-g 467 (599)
...|...+++..+. .|+ ...|..|...|.+. |+.++|.+.|++.++. .| +..++..+.+.+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45666666666654 344 55677777777774 7888888888888764 45 366777777777774 8
Q ss_pred CHhHHHHHHHHHHhCCCC
Q 007543 468 DFDSAVVWYKEMESCGFP 485 (599)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~ 485 (599)
+.++|.+.+++.+.....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888888774433
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.89 E-value=0.79 Score=37.71 Aligned_cols=104 Identities=11% Similarity=0.104 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHHcCCHHHHHHHHHHhHhcc
Q 007543 172 SVVSHTALMEAYGRGGRY------KNAEAIFRRMQSSGPRPSAL----TYQIILK---LFVEANKFKEAEEVFMTLLDEE 238 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---~~~~~g~~~~A~~~~~~~~~~~ 238 (599)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 555666666666666666 6666666666553 333311 1111110 123447899999999999765
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007543 239 KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS 280 (599)
Q Consensus 239 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 280 (599)
...+ ..+|......-.+.|++..|.+++......+.+|.
T Consensus 90 hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3334 88888888889999999999999999888765553
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.59 E-value=0.8 Score=37.69 Aligned_cols=112 Identities=9% Similarity=0.083 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHC
Q 007543 381 PDICSYTTMLSAYVNASDM------EGAEKFFRRLKQDGFVPNVI----TYGTLIK---GYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 381 p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~~~ 447 (599)
-|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|-.|.- .+...+++++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3556666666666666666 6666677666543 344321 1111111 112347889999999998754
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 448 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
.-.- ..+|.....--.++|+++.|.+++.+.+..+-.| ...+...+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 2222 7788888888889999999999999998866333 33344333
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.24 E-value=0.97 Score=36.10 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHhHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK---MMEIYDKMRVNGIKP--NQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 473 (599)
...+.+-|.+....| .|+..+--.+..++.+..+... ++.+++...+.+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444444444433 2555555556666666665444 666666665432 12 1223334445666777777777
Q ss_pred HHHHHHHhCCCCCCH
Q 007543 474 VWYKEMESCGFPPDQ 488 (599)
Q Consensus 474 ~~~~~m~~~g~~p~~ 488 (599)
++++.+++ +.|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 77777766 45543
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.30 E-value=1.3 Score=35.29 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN---AEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
+..+++-|.+....|. ++..+-..+.-++.+..+..+ ++.+++.+.+.+ +.-.....-.|.-++.+.|+++.|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444544444332 455555555566666555444 666666665543 10122233334445666666666666
Q ss_pred HHHHhHhc
Q 007543 230 VFMTLLDE 237 (599)
Q Consensus 230 ~~~~~~~~ 237 (599)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666653
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.34 E-value=1 Score=48.32 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=41.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 460 MDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+-|...|+++.|+++.++... +.|+ -.+|..|..+|...|+++.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3446677888888888888877 4444 5788888888888888888888888863
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.68 E-value=6.3 Score=42.26 Aligned_cols=126 Identities=16% Similarity=0.049 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-CHHHHHHHHHHHHh-------CCCCCCHH-
Q 007543 142 LMLITAYGKQGD-FNKAEKVLSFMNKKGYAPSVVSH--TALMEAYGRGG-RYKNAEAIFRRMQS-------SGPRPSAL- 209 (599)
Q Consensus 142 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g-~~~~A~~l~~~m~~-------~g~~p~~~- 209 (599)
..|+..+...|+ ++.|..+|+++.+.. |....+ ..++..+.+.+ +--+|.+++.+..+ .-...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 356666666666 588999999998873 433332 23333333332 23345555544432 11111211
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 210 ---------TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 210 ---------t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
....-.+.|...|+++.|+++-++.+... +.+-.+|..|..+|.+.|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a----PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA----LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC----chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222345677899999999999998642 6678999999999999999999999998874
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.13 E-value=4 Score=40.18 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----hCCCCCCHHHHHH
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKAKNI 493 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ 493 (599)
.++..+...|+.+++...+..+.... +-+...|..++.++.+.|+..+|++.|+.+. +.|+.|...+-..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34555556666666666666655432 3345566666666666666666666666553 2466666655433
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.11 E-value=2.8 Score=41.29 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666777788888877777776654 55677777777788888887777777776543
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.86 E-value=25 Score=40.07 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..-|..++..+.+.+.++.+.++-...++....+ .++ ...|..+.+.+...|++++|...+-.+...
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 3446667777777777777777666665432111 111 124666777777777777777766666543
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.16 E-value=2 Score=36.01 Aligned_cols=31 Identities=6% Similarity=0.002 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 244 PDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+...---+..+|.+.+++++|+.+++.+..
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3445555688899999999999999877644
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.03 E-value=10 Score=30.38 Aligned_cols=74 Identities=8% Similarity=0.006 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 414 FVPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 414 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
-.|+..+--.+..++.+..+ ..+++.+++++.+.+-.-....+--+.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 35666666666777777664 345777777777543111233455566677888888888888888877 566653
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.75 E-value=31 Score=34.50 Aligned_cols=93 Identities=6% Similarity=0.073 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcC--HHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQ--DGFVPN---VITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPN--QTI 455 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~ 455 (599)
..|...|...|++.+|.+++..+.. .+.... ...|...+..|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3444555556666666666665542 111111 22344455555566666666665555431 111222 123
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|...+..+...++|.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444555555556666555555554
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.70 E-value=37 Score=35.48 Aligned_cols=271 Identities=8% Similarity=-0.010 Sum_probs=128.4
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 123 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
++..++.....++.....-..-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 45555555544433333334455666677777766665443 1335555555666777778877777766666555
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHhHhccC--------CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 203 GPRPSALTYQIILKLFVEANKFKE--AEEVFMTLLDEEK--------SPLKPDQ-KMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 203 g~~p~~~t~~~ll~~~~~~g~~~~--A~~~~~~~~~~~~--------~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
|.. .+.....++..+.+.|.+.. ..+=++.++..+. ..++++. .....++..+.+-..+ .....
T Consensus 132 ~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~- 206 (618)
T 1qsa_A 132 GKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFAR- 206 (618)
T ss_dssp SSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHH-
T ss_pred CCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHh-
Confidence 432 33345566666665554322 2222222222100 0001111 1111122111111111 11110
Q ss_pred HHHcCCCCCHHHHHHHh----c-ccCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 272 MAERGVQQSTVTYNSLM----S-FETNYKEVSKIYDQMQRAGLQPDVVSYA----LLINAYGKARREEEALAVFEEMLDA 342 (599)
Q Consensus 272 m~~~g~~~~~~~~~~ll----~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~ 342 (599)
. ..++...-..+. . ...+.+.|...+....+.. ..+..... .+...+...+...++...+......
T Consensus 207 --~--~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~ 281 (618)
T 1qsa_A 207 --T--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (618)
T ss_dssp --H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred --c--cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc
Confidence 0 112221111111 1 2346677777777776543 22332222 2222233334244555555555443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 343 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
..+.....-.+....+.|+++.|...|+.|..... .......-+..++...|+.++|..+|..+.+
T Consensus 282 --~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 282 --SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp --CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 23333333333444566888888888887765321 2344444555677778888888888887764
No 244
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.53 E-value=9.8 Score=28.62 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=62.3
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
....+.++|.-+-+|+...+. .+.+--.-+..+.+.|++++|..+.+.+. .||.+.|-+|... +.|..+++
T Consensus 18 TG~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~l 88 (116)
T 2p58_C 18 TGNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSAL 88 (116)
T ss_dssp HTTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHH
Confidence 345678899999999998762 22333344567788999999999887766 5899999888654 78888888
Q ss_pred HHHHHHHHhCC
Q 007543 193 EAIFRRMQSSG 203 (599)
Q Consensus 193 ~~l~~~m~~~g 203 (599)
...+.++..+|
T Consensus 89 e~rL~~la~sg 99 (116)
T 2p58_C 89 ESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhCC
Confidence 88887887765
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.36 E-value=9.3 Score=28.70 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=65.1
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
....+.++|.-+-+|+...+. .+.+--.-+..+.+.|++++|..+.+.+. .||.+.|-+|... +.|..+++
T Consensus 17 TG~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~l 87 (115)
T 2uwj_G 17 SGQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAAL 87 (115)
T ss_dssp HTTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHH
Confidence 345678899999999998762 22333344567788999999998877665 5899999888654 78888888
Q ss_pred HHHHHHHHhCCCCCCHHHH
Q 007543 193 EAIFRRMQSSGPRPSALTY 211 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~ 211 (599)
..-+.++..+| .|....|
T Consensus 88 e~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 88 DRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHH
Confidence 88888887776 3333333
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.97 E-value=9.1 Score=28.94 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 434 LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.=+..+-++.+....+.|++.+..+.+.+|.|.+++..|.++++-...
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555566667777777777777777777777777766643
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.55 E-value=18 Score=41.39 Aligned_cols=142 Identities=10% Similarity=0.026 Sum_probs=74.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC---------------
Q 007543 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GF--------------- 414 (599)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--------------- 414 (599)
++..+.+.+..+-+.++..-. +.++..-..+..+|...|++++|...|++.... +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444445555555444433221 223333334445666666666666666654210 00
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 007543 415 ---VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ----TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487 (599)
Q Consensus 415 ---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 487 (599)
..-..-|..++..+.+.+.++.+.++-+...+..-.-+. ..|..+..++...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 011233566677777777777777776665542111111 256777777777788877777777665532 23
Q ss_pred HHHHHHHHHHHhhcC
Q 007543 488 QKAKNILLSLAKTAD 502 (599)
Q Consensus 488 ~~~~~~ll~~~~~~g 502 (599)
......|+..++..|
T Consensus 971 ~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC
Confidence 344555555444433
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.98 E-value=7.7 Score=29.34 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-.+.+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44455566666666666777777777777777777777777777776632 1223345555543
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.19 E-value=22 Score=28.85 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 415 VPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
.|+..+--.+..++.+..+ ..+++.+++++...+-.-.....-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 5677776677778887765 456778888877642111223444556678899999999999999988 677653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.10 E-value=58 Score=32.44 Aligned_cols=171 Identities=9% Similarity=0.094 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007543 248 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR 327 (599)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 327 (599)
....|...|...|++.+|.+++..+...-. +..+... -...+...+..|...+
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~--------------~~~~~~~-------------kve~~l~q~rl~l~~~ 191 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETY--------------GSMEMSE-------------KIQFILEQMELSILKG 191 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--------------SSSCHHH-------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH--------------hcccHHH-------------HHHHHHHHHHHHHHCC
Confidence 445678888899999999999888763200 0000000 0234556677888888
Q ss_pred CHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH----HHHhc
Q 007543 328 REEEALAVFEEMLD----AGVRPTH--KAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLS----AYVNA 396 (599)
Q Consensus 328 ~~~~A~~~~~~m~~----~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~----~~~~~ 396 (599)
++..|..++.+... ....|+. ..+...+..+...+++.+|...|.++... ...-|...+..++. ...-.
T Consensus 192 d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa 271 (445)
T 4b4t_P 192 DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLS 271 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhC
Confidence 88888888887632 2212222 24566677777888888888877776542 11113222222111 11111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN--NLEKMMEIYDKMR 445 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~ 445 (599)
+....-..++........-++...|..++.+|.... +++...+.|....
T Consensus 272 ~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 272 PYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp SCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred CCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 111111112222211111245667778888887643 5666666655443
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.58 E-value=17 Score=29.16 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 436 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++++-...+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44555556666677788888888888888888888888888777543 233344455544
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.18 E-value=19 Score=28.87 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 380 SPDICSYTTMLSAYVNASDM---EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.|+..|--.+..++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45555555555556655533 356666666665432112344445666677777777777777777643
No 253
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.11 E-value=24 Score=30.56 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
++...++.++|.-|..+|+--. +..|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3446677777777776665554 456777777777777777777777777776666643
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.32 E-value=22 Score=32.40 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=67.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCC
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANK 223 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~ 223 (599)
..+.+.|++++|++....-++... -|...-..|++.+|-.|++++|.+-++...+..+. |-..+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 345567788888887777776643 36777777888888888888888877777664332 222244444433
Q ss_pred HHHHHHHHHHhHhccC-CC-CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHc
Q 007543 224 FKEAEEVFMTLLDEEK-SP-LKPDQKMFHMMIYMYK--KAGGYEKARKLFALMAER 275 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~-~~-~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 275 (599)
+..-..+..... .+ +.....-...++.+.. ..|+.++|..+-.++.+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222221110 01 1112223334555444 458888888887777654
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.17 E-value=15 Score=29.41 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
.-+..+-++.+...++.|++....+.+.+|-+.+++..|.++|+-.+.+ +.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3445555566666666777777777777777777777777777766632 2233445555543
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.76 E-value=18 Score=30.32 Aligned_cols=121 Identities=9% Similarity=0.032 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHH
Q 007543 388 TMLSAYVNASDMEGAEKFFRRLKQD-GFVPN-------VITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIKPNQTIFT 457 (599)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~ 457 (599)
.-+..+...|.++.|+-+.+.+... +..|+ ..++..+.+++...|++..|...|++.++. .+.-+...+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3355666777777777766664421 11233 124556667777777777777777775421 1111111111
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCC
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 521 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p 521 (599)
++. ....... ......+...-.-+..++.+.+++++|..+++.+......|
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 110 0000000 00122333444446678888999999999998875433333
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.13 E-value=12 Score=34.28 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
..+.+.|++++|++....-++..+. |...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455778888888877777776544 7777777888888888888888877777643
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.83 E-value=1.2e+02 Score=31.60 Aligned_cols=52 Identities=6% Similarity=-0.075 Sum_probs=25.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
..+.|+++.|...|..|.... .....-.--+..++...|+.++|..+|+.+.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334566666666666554321 1112222223344555566666666666654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.64 E-value=54 Score=32.48 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGY--APSVVSHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
....+...|.+.|+++.|.+.|.++..... ..-...+-.+|+.+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344566666666666666666666654211 112334444555555555555555554444
No 260
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.20 E-value=52 Score=27.04 Aligned_cols=54 Identities=7% Similarity=0.144 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 435 EKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
+++.++|.-|..+|+--. +..|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 347788888887766555 557788888888888888888888888877777744
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.58 E-value=53 Score=26.64 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 380 SPDICSYTTMLSAYVNASDM---EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.|+..+-..+..++.+..+. .+++.+++++...+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45555555556666665543 456666666665432223333445666777777777777777777754
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.34 E-value=46 Score=25.10 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 267 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 267 (599)
..++|..+-+.+...+. ....-.+-+..+.+.|++++|..+.+.. ..||...|-+|.. .+.|..+++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-------c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-------AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-------CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-------CCchHHHHHHHHH--HhcccHHHHHH
Confidence 45666666666655432 2222222233455666666666655433 2566666655533 34555566555
Q ss_pred HHHHHHHc
Q 007543 268 LFALMAER 275 (599)
Q Consensus 268 ~~~~m~~~ 275 (599)
.+..+...
T Consensus 91 rL~~la~s 98 (116)
T 2p58_C 91 RLNRLARS 98 (116)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 55444433
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.57 E-value=44 Score=25.13 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 267 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 267 (599)
..++|..+-+.+...+. ....-.+-+..+.+.|++++|..+.+.. ..||...|-+|.. .+.|..+++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-------c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-------PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-------CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-------CCchHHHHHHHHH--HhcccHHHHHH
Confidence 46667666666665443 2222222334566677777776654333 2666666655543 45666666666
Q ss_pred HHHHHHHc
Q 007543 268 LFALMAER 275 (599)
Q Consensus 268 ~~~~m~~~ 275 (599)
.+..+...
T Consensus 90 rL~~la~s 97 (115)
T 2uwj_G 90 RLAGLGGS 97 (115)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 66555544
No 264
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=60.95 E-value=2e+02 Score=31.68 Aligned_cols=186 Identities=6% Similarity=-0.047 Sum_probs=92.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHH
Q 007543 323 YGKARREEEALAVFEEMLDAGVRPTH--KAYNILLDAFAISGMVDQARTVFKCMRRDRC-------SPDICSYTTMLSAY 393 (599)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~~ 393 (599)
....|+.++++.++......+-..+. ..-..+.-+....|..+++..++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34455666666666554431101222 2333344445556665667776666554311 01111222222234
Q ss_pred HhcCC-HHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH--HHhcCC
Q 007543 394 VNASD-MEGAEKFFRRLKQDGFVPNVITYG--TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA--YGKNKD 468 (599)
Q Consensus 394 ~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~ 468 (599)
+..|. -+++.+.+..+.... .+...... +|...+...|+-+....++..+.+. .+..+...+.-+ +.-.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 33342 245556666555432 11111122 2333345667777777777776653 133333334443 346788
Q ss_pred HhHHHHHHHHHHhCCCCCCHHH-HH---HHHHHHhhcCcHHHHHHHHHhcc
Q 007543 469 FDSAVVWYKEMESCGFPPDQKA-KN---ILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~~~~-~~---~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+.+..+++.+... .++.. |. ++.-+|...|+.....+++..+.
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 88888888877652 33322 32 23346777888777776777654
No 265
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.46 E-value=74 Score=26.54 Aligned_cols=56 Identities=14% Similarity=0.305 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH
Q 007543 435 EKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKA 490 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 490 (599)
+.+.++|..|..+|+--. +..|......+-..|++.+|.++|+.-++.+..|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 346778888888777665 55788888888888999999999988888877776543
No 266
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.68 E-value=2.1e+02 Score=31.51 Aligned_cols=257 Identities=10% Similarity=0.013 Sum_probs=116.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHhHhccCC--CC--CCCHHHHHHHHH
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQ--IILKLFVEANKFKEAEEVFMTLLDEEKS--PL--KPDQKMFHMMIY 254 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~~~~~~~li~ 254 (599)
-+....|+.++++.++......+...+..+-. .+.-+....|..+++..++...+..... +- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556677777777666654321122333222 2223344445445566666655543210 00 011111222222
Q ss_pred HHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHh------cccCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHh
Q 007543 255 MYKKAGG-YEKARKLFALMAERGVQQSTVTYNSLM------SFETNYKEVSKIYDQMQRAGLQPDVVSY--ALLINAYGK 325 (599)
Q Consensus 255 ~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll------~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~ 325 (599)
+++-.|. -+++...+..+....- ....+.+.+ -+.++.+-+..++..+.+.. +..+. ..+.-++..
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 2222232 2344455554443210 111111111 12355555555665555431 22222 223333446
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHKAY--NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 403 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 403 (599)
.|+.+.+..+.+.+.... .|....- .++.-+|+..|+......++..+.... ..++.....+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 677777777777766531 2222111 123345666777766666777776532 122222222222444566666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 007543 404 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNL-EKMMEIYDKMR 445 (599)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 445 (599)
++++.+.+.+ .|....-..+.-+....|.. .++...+..+.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6666665544 44444444444444444432 56667777775
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.63 E-value=60 Score=32.11 Aligned_cols=62 Identities=5% Similarity=-0.010 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 211 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 211 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+..+...|.+.|+++.|.+.|.++.+.. .+...-...+-.++..+...+++..+...+.+..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344445555555555555555554321 1112233444555555555555555555555543
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.46 E-value=1.7e+02 Score=28.50 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHhhhchHHHHHHHhhhcCCCCChHHHHHHHHHhhhc---------ccHHHHHHHHHHHHHcCCCCCC
Q 007543 67 EAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQL---------KKWNVVSEVLEWLRIQSWWDFN 137 (599)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~ 137 (599)
+........+.....+.++...++...+.-...++...+-..+..+-.. ...+...+.++|......+=+.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSG----PRPSA 208 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~ 208 (599)
...-.-|+..|...|++.+|.+++.++.+.--..| ...|-.-++.|...+++.++...+....... ++|..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Q ss_pred HHHHHHHHH--HH-HcCCHHHHHHHHHHhHhccCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 209 LTYQIILKL--FV-EANKFKEAEEVFMTLLDEEKSPLKP--DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 209 ~t~~~ll~~--~~-~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
....-...+ +. ..+++..|...|-+..+.-.....| .....-.++.........+--.-+-......-..|....
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHH
Q ss_pred HHHHhcc--cCCHHHHHHHHHH
Q 007543 284 YNSLMSF--ETNYKEVSKIYDQ 303 (599)
Q Consensus 284 ~~~ll~~--~~~~~~a~~~~~~ 303 (599)
+..++.+ .+++.+...++..
T Consensus 259 l~~L~~a~~~~dl~~f~~iL~~ 280 (394)
T 3txn_A 259 MKSVAEASHKRSLADFQAALKE 280 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=46.86 E-value=1.9e+02 Score=27.10 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
|+.....+...|.+.|++.+|...|-. |-.-+...+..++.-+...
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHh
Confidence 566666777777777777777776641 1111344555555444443
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.05 E-value=2e+02 Score=27.21 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN 432 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 432 (599)
|+.....+...|.+.+++.+|...|- . |-.+....|..++.-+...+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 55556666667777777777777662 1 22333456655554444433
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.95 E-value=1.6e+02 Score=25.47 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007543 152 GDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
+...++..+|..|...|+.-. ..-|-.....+...|++.+|.++|+.-++.+..|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346677778887777665433 44566667777777888888888877777776663
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.87 E-value=1.2e+02 Score=25.17 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 155 NKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL 209 (599)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 209 (599)
+.+..+|..|...|+.-. ..-|-.-...+...|++.+|.++|..-++.+..|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 447778888888776544 4456667777777888888888888888877777543
No 273
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.33 E-value=81 Score=27.78 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 435 EKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
+.+.++|..|..+||--. +..|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 567789999998877666 568888889999999999999999999887777743
No 274
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=40.87 E-value=2.1 Score=42.86 Aligned_cols=261 Identities=11% Similarity=0.148 Sum_probs=129.4
Q ss_pred hhHHHHHHHHhhhchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh
Q 007543 71 KNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK 150 (599)
Q Consensus 71 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 150 (599)
..|..+-++.-+.+...++++++.....+-. +..++......+.++.....+.-.++.. -.+..=+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~---y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSS---YMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCSCCCS---SSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCCChHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHh
Confidence 4566666655554544444443322222222 2233333334455555444444333321 112222356666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
.+++.+-.+++. .||+.-...+.+-|...|.++.|.-+|..+-. |.-|...+...|++..|.+.
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTT
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHH
Confidence 666554433321 13444444555555555655555555544311 22233334444555444432
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHc
Q 007543 231 FMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRA 307 (599)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~ 307 (599)
-++ ..+..||-.+-.+|...+.+.-|.-.--.+.-. ++ ....++. ..|.+++.+.+++.-...
T Consensus 193 ArK---------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 193 ARK---------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTT---------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHh---------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 211 335567888888888888877664332222111 00 0001111 146677877777776642
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 007543 308 GLQPDVVSYALLINAYGKARREEEALAVFEEMLD-AGVRP------THKAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~------~~~~~~~li~~~~~~g~~~~A~~ 369 (599)
. ......|+-|.-.|+|- ++++..+.++..-. .+++. ....|.-++-.|++-..++.|..
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 35677888888888775 44444444333211 12221 22358888888888888887753
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.91 E-value=1.6e+02 Score=24.11 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007543 155 NKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 208 (599)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 208 (599)
+++..+|..|...|+.-. ..-|-.-...+...|++.+|.++|+.-++.+.+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 448888888888876544 456777778888889999999999888888777744
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=37.80 E-value=3.8e+02 Score=28.10 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 185 (599)
.+|-.+.++|.+++|.++.++.... +..-...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 5777788999999999988776532 11011244455566653
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.87 E-value=2.7e+02 Score=25.92 Aligned_cols=114 Identities=7% Similarity=0.042 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA----IFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~----l~~~m~~~g~~p~~~t~~~ll 215 (599)
.|-++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +.+-..+.+.+++.....-++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35567777888888888888765422 22334555554444 344445566777777666666
Q ss_pred HHHHHcCCHH-----HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 216 KLFVEANKFK-----EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 269 (599)
Q Consensus 216 ~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 269 (599)
..+.....-+ -..+...+..+.+. ...-+......+...|.+.|++.+|+..|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6654432111 11122222222111 12346677778888888888888877655
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.32 E-value=1.2e+02 Score=24.04 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR--YKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 207 (599)
...++.-|...|+.++|.+.++++....+. .......+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 346888888899999999999988632111 23444555556655442 3566777877777765533
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.11 E-value=3.8e+02 Score=29.61 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HHHHHHHHHHHHHcC
Q 007543 210 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QKMFHMMIYMYKKAG 260 (599)
Q Consensus 210 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 260 (599)
-|..++..+-+.+.++.+.++-+.+++.-..+ .++ ...|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~d-d~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSC-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC-CccchHHHHHHHHHHHhhCC
Confidence 67889999999999999998888887532111 111 246888888887665
No 280
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.83 E-value=1.3e+02 Score=24.38 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 163 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 163 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
.+.+.|+. ...--..++..+...+.+-.|.++++.+.+.++..+..|.--.++.+.+.|-
T Consensus 17 ~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34455554 3334445555555555566677777777666666666665555666665553
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.50 E-value=1.9e+02 Score=23.68 Aligned_cols=64 Identities=13% Similarity=0.251 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCC
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD--MEGAEKFFRRLKQDGFV 415 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 415 (599)
.+.++.-|...|+.++|...++++.... .........+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456666666777777777776664210 1112233333334444322 34455555555554433
No 282
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.69 E-value=3.1e+02 Score=25.63 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 433 NLEKMMEIYDKMRVNGIKPNQT--IFTTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
+..+..++---+...++.|... +...-+..+.+.+++..|..+.+++++.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3445555555555556666644 56777888999999999999999999854
No 283
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.33 E-value=3.3e+02 Score=25.72 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007543 345 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL 424 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 424 (599)
.-|+.....+...|.+.+++.+|...|= .|..+.+..|..++.-+...+... .++...-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHH
Confidence 3467777888889999999999988772 233344466655554444433211 2233333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 007543 425 IKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~ 445 (599)
+ -|.-.+++..|..+++...
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHH
Confidence 3 3445678888888776655
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.29 E-value=1.9e+02 Score=25.42 Aligned_cols=54 Identities=9% Similarity=0.294 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007543 155 NKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 208 (599)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 208 (599)
+++..+|..|...|+.-. ..-|-.....+...|++.+|.++|..-++.+..|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 577788888888876544 456777778888889999999999888888777743
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.74 E-value=2e+02 Score=22.69 Aligned_cols=64 Identities=13% Similarity=0.251 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCC
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD--MEGAEKFFRRLKQDGFV 415 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 415 (599)
...++.-|...|+.++|.+.++++.... .........+..++-+.++ .+.+.+++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456666666677777777776664210 1112233333334444322 34455556555555433
No 286
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.62 E-value=1.3e+02 Score=24.21 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=32.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 164 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 164 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
+.+.|+.++. .-..++..+...+..-.|.++++.+.+.++..+..|.--.++.+.+.|-
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455555433 2334444554555555666666666666555566655555555555553
No 287
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.38 E-value=2.6e+02 Score=23.99 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007543 396 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 428 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 428 (599)
..+.+.|+-.+-+|++.|..|....=..++.+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356666666666666666555444444444333
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.10 E-value=2.9e+02 Score=24.46 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKM 444 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (599)
+.......+..+.+.|+-++|.++|=+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444555556666666666655433
No 289
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.40 E-value=2.9e+02 Score=23.81 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHhhCC
Q 007543 397 SDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~ 413 (599)
.+.+.|+-.+-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.22 E-value=1.2e+02 Score=26.28 Aligned_cols=181 Identities=8% Similarity=-0.049 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVRPTHKA--YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS--YTTMLSAYVN 395 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~ 395 (599)
+...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3445667888777777776666554433221 12234444566766543 34444554443211 1123344456
Q ss_pred cCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH---HHHHHHHHHHhcCCH
Q 007543 396 ASDMEGAEKFFRRLKQDGFVP---NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT---IFTTIMDAYGKNKDF 469 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~ 469 (599)
.|+.+-+..+++.....++.+ +..-.+. +...+..|+.+- ++.+.+.|..++.. .-.+.+...++.|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 777777666666543211111 1111222 223345566544 44444455444421 122334445567776
Q ss_pred hHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCcHHHHHHHHHh
Q 007543 470 DSAVVWYKEMESCGFPPDQKA--KNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 470 ~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
+-+ +.+.+.|..++... -.+.+......|..+-+..+++.
T Consensus 164 ~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 164 SMV----QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp HHH----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred HHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 544 44445555554321 11233444567788877777764
No 291
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.14 E-value=4.4e+02 Score=25.94 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC
Q 007543 396 ASDMEGAEKFFRRLKQDGFVPN 417 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~~~p~ 417 (599)
.++.+.|+..+.+|.+.|..|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3556666666666666554443
No 292
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.91 E-value=1.3e+02 Score=24.00 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 164 MNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 164 m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
+.+.|++++.. -..++..+...+ .+-.|.++++.+.+.++..+..|.---++.+.+.|-+
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44566554432 334555555555 5666777777777776666666666666666665543
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.23 E-value=1.1e+02 Score=25.09 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR--YKNAEAIFRRMQSSGPRP 206 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 206 (599)
...++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 457888888899999999999988532111 23444555555555332 455667777777766553
No 294
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.47 E-value=7e+02 Score=27.32 Aligned_cols=91 Identities=15% Similarity=0.102 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007543 351 YNILLDAFAISGM---VDQARTVFKCMRRD----RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGT 423 (599)
Q Consensus 351 ~~~li~~~~~~g~---~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 423 (599)
-..++...|..|. .+.|.+.|+..... .++||... .+...-.+.|..++-..++++..... +..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHH
Confidence 3456777788776 55788888877653 25566543 22333345677777777777777643 4444456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007543 424 LIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
++.+++...+.+...++++....
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCHHHHHHHHHHHhC
Confidence 78888888888888888777654
No 295
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.31 E-value=3.1e+02 Score=23.14 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHcCC
Q 007543 207 SALTYQIILKLFVEANK 223 (599)
Q Consensus 207 ~~~t~~~ll~~~~~~g~ 223 (599)
|...-...+.++.+.+.
T Consensus 63 ~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGD 79 (211)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 44444444444444444
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.29 E-value=4.7e+02 Score=26.37 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=44.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH--HH-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKG-YAPSV--VS-HTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~--~~-~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
...++.+++.|...+.++.|.++..+..--- ..++. .. +..+.+.+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3457788999999999999999998874210 00111 12 223566677788999999888887664
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.23 E-value=3e+02 Score=22.98 Aligned_cols=169 Identities=12% Similarity=0.014 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
+|...-...+..+.+.+..+ +...+.++.. .++...-...+.++.+.|..+ +...+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555556666666533 3333333332 456666666667777776543 3333334433 35777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHh
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (599)
.++.+.++.+ +...+..+.. .++...-...+.++.+.+.. ++...+..+.. .++..+-...+.++.+.|. .
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 7777777653 3344444443 35666666667777777763 34444444443 3566666777777777765 4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007543 471 SAVVWYKEMESCGFPPDQKAKNILLSLAK 499 (599)
Q Consensus 471 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 499 (599)
++...+..+.+ .++...-.....++.
T Consensus 169 ~~~~~L~~~l~---d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 169 RVRAAMEKLAE---TGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHH---HCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 45666666654 244444333334433
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.12 E-value=1.3e+02 Score=24.33 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=31.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 164 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 164 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.++..+..|.---++.+.+.|-
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 44455554432 233444444444 55666777777666666666665555555555553
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.66 E-value=3.1e+02 Score=23.07 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=39.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 147 AYGKQGDFNKAEKVLSFMNKKGYA--PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
+|-+..++..|...++.+.+..+. ||+.. - ++.|.-. .......|+.+...|...|+.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~----------------~---~~~ffvd-~~DkEfFy~l~a~lltq~g~r 130 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDA----------------R---IQEMFVD-PGDEEFFESLLGDLCTLSGYR 130 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH----------------H---HHTTSCC-TTCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCccccc----------------c---cceeeec-cchHHHHHHHHHHHHHHhcCH
Confidence 667788899999888888865443 22211 1 1111111 222334555566666667777
Q ss_pred HHHHHHHHHhH
Q 007543 225 KEAEEVFMTLL 235 (599)
Q Consensus 225 ~~A~~~~~~~~ 235 (599)
++|...|..-.
T Consensus 131 ~EaI~y~~~Sf 141 (242)
T 3kae_A 131 EEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhhHhhhhc
Confidence 77777666554
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.45 E-value=3.8e+02 Score=29.58 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCC---------------
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK--------------- 243 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------- 243 (599)
++..+...|.++-|.++...+ +.++..--.+..+|...|++++|.+.|+++- .++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA----~gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS----LVLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC----CTTCSSCCSCGGGHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh----hhcccCcccccchhhhhhc
Confidence 556666677776655543322 2244333346667777888888888887663 1111
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 244 --------PDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 244 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
....-|..++..+-+.+.++.+.++-+...+.
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11236889999999999999999998888864
No 301
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.42 E-value=3.2e+02 Score=23.02 Aligned_cols=169 Identities=12% Similarity=0.017 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
++...-...+..+.+.+.. .+...+..+.. .++...-...+.++.+.|.. ++...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 4555555666666666663 33344444443 35666666677777777753 33334444433 35777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHh
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (599)
.++.+.++.+ +...+..+.+ .++...-...+.++.+.|.. ++...+..+.+ .++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 7777777643 4444444443 35666666677777777764 34444555442 3566666677777777766 4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007543 471 SAVVWYKEMESCGFPPDQKAKNILLSLAK 499 (599)
Q Consensus 471 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 499 (599)
++...+.++.+ .++...-.....++.
T Consensus 174 ~~~~~L~~~l~---d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 174 RVRAAMEKLAE---TGTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHHHHHH---HCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 55555655554 244443333333333
No 302
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.41 E-value=3.4e+02 Score=23.35 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=24.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007543 324 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 362 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 362 (599)
.+-.+++.|+-.+.+|++.| .|....-..++.+.-..|
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 34567777777777777777 555555555555555544
No 303
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.17 E-value=3e+02 Score=22.54 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007543 329 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 381 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 381 (599)
.+....++..+.+.|+..|...-...+....+.|. ....+-.++..+|+.+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCH
Confidence 44555666666666655444444455555444331 2334555666666543
No 304
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.97 E-value=2.3e+02 Score=21.16 Aligned_cols=56 Identities=5% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHH-----HhCCCCCCHHHHHHH
Q 007543 437 MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM-----ESCGFPPDQKAKNIL 494 (599)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~~~~~l 494 (599)
|.++.+++...|+.|+..+..-++..|...+- + +.++..+. ...|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 44555555556888888888888887776664 2 33333332 234667777665544
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.88 E-value=1.9e+02 Score=20.23 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=38.1
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 443 KMRVNGIKPNQTIFTTIMDAYGKNK-DFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 443 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556677766544 34555555554 455677888888776656677777777777666653
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.07 E-value=2e+02 Score=20.14 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=31.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 164 MNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 164 m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|..-.++.+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555544333 34444444443 444566666666666555566666666666655553
No 307
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.68 E-value=1.4e+02 Score=24.17 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=35.2
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 163 FMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 163 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
.+.+.|+.++.. -..++..+...+ .+-.|.++++.+.+.++..+..|.---++.+.+.|-+
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345566554433 234444444444 5556777777777766666666666666666666543
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.50 E-value=3.4e+02 Score=23.27 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=24.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007543 324 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 362 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 362 (599)
.+-.+++.|+-.+.+|++.|-.|....-..++.+.-..|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345678888888888888776555555555555544444
No 309
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.17 E-value=3.9e+02 Score=22.46 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=60.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCH
Q 007543 147 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKF 224 (599)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~ 224 (599)
++.-.|.+.+++-++.... +..+-.----+|-+..++..|+..++.+....+. ||+..
T Consensus 42 ~LyyngEY~R~Lf~L~~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~-------------- 101 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA-------------- 101 (242)
T ss_dssp HHHHTTCHHHHHHHHHTCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH--------------
T ss_pred hhhhcchHhHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc--------------
Confidence 3445788888876664432 2222222223566778899999888888865554 33221
Q ss_pred HHHHHHHHHhHhccCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 225 KEAEEVFMTLLDEEKSPLKPD-QKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
- ++.+. .+ +.| ...++.+...+.+.|+.++|+..|..--..
T Consensus 102 --~---~~~ff----vd-~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 102 --R---IQEMF----VD-PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp --H---HHTTS----CC-TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --c---cceee----ec-cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 0 11111 01 223 456777888899999999999999765543
Done!