Query 007544
Match_columns 599
No_of_seqs 291 out of 1646
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 12:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.1E-52 2.4E-57 449.8 52.9 430 138-591 13-452 (455)
2 PRK10189 MATE family multidrug 100.0 1.7E-47 3.7E-52 413.4 54.5 428 138-587 25-467 (478)
3 PRK00187 multidrug efflux prot 100.0 1.8E-47 3.9E-52 413.0 50.9 434 137-593 5-457 (464)
4 PRK10367 DNA-damage-inducible 100.0 3.8E-46 8.3E-51 399.2 52.6 412 140-577 7-428 (441)
5 PRK09575 vmrA multidrug efflux 100.0 3.8E-46 8.2E-51 401.9 52.1 423 135-579 5-435 (453)
6 PRK01766 multidrug efflux prot 100.0 5.6E-45 1.2E-49 394.1 50.3 425 138-586 8-446 (456)
7 TIGR01695 mviN integral membra 100.0 1.4E-35 3.1E-40 325.0 51.8 415 144-581 2-429 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 3.2E-33 7E-38 305.2 49.5 406 145-579 2-433 (488)
9 KOG1347 Uncharacterized membra 100.0 8.3E-36 1.8E-40 317.1 27.4 429 139-592 25-462 (473)
10 TIGR00797 matE putative efflux 100.0 1.1E-32 2.3E-37 287.0 41.7 334 150-505 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 5.1E-32 1.1E-36 289.5 46.0 401 144-578 3-410 (416)
12 COG0728 MviN Uncharacterized m 100.0 4.4E-30 9.5E-35 271.1 51.9 423 141-582 6-439 (518)
13 PF03023 MVIN: MviN-like prote 100.0 6.5E-30 1.4E-34 274.3 48.4 389 172-582 5-405 (451)
14 PRK10459 colanic acid exporter 100.0 2.3E-25 4.9E-30 243.6 47.2 396 141-577 4-402 (492)
15 COG2244 RfbX Membrane protein 99.9 4.3E-22 9.3E-27 217.1 44.5 398 140-576 4-407 (480)
16 COG0534 NorM Na+-driven multid 99.8 3.4E-19 7.4E-24 191.4 26.7 207 375-581 12-222 (455)
17 PRK10189 MATE family multidrug 99.8 6.4E-19 1.4E-23 190.9 28.7 201 378-578 27-235 (478)
18 PRK00187 multidrug efflux prot 99.8 1.3E-18 2.8E-23 188.2 27.9 205 374-579 4-214 (464)
19 PRK10367 DNA-damage-inducible 99.8 2E-18 4.4E-23 185.2 28.1 204 376-579 5-211 (441)
20 PRK01766 multidrug efflux prot 99.8 4.3E-18 9.3E-23 184.3 27.3 205 375-579 7-217 (456)
21 PRK09575 vmrA multidrug efflux 99.8 5.9E-18 1.3E-22 182.7 27.5 205 376-580 8-215 (453)
22 TIGR01695 mviN integral membra 99.7 1.5E-15 3.2E-20 166.6 29.1 210 137-367 218-429 (502)
23 PF01943 Polysacc_synt: Polysa 99.7 2.9E-14 6.4E-19 142.8 32.1 269 145-446 2-272 (273)
24 TIGR00797 matE putative efflux 99.7 5.2E-15 1.1E-19 153.9 26.0 192 388-579 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.7 3.1E-14 6.8E-19 153.1 30.5 211 137-368 193-405 (451)
26 COG0728 MviN Uncharacterized m 99.6 6.7E-13 1.5E-17 141.1 34.6 235 138-395 228-464 (518)
27 PF01554 MatE: MatE; InterPro 99.6 3.5E-16 7.5E-21 144.4 5.8 160 388-547 1-161 (162)
28 TIGR02900 spore_V_B stage V sp 99.6 2.3E-13 5.1E-18 148.7 27.8 204 138-367 221-435 (488)
29 PF01554 MatE: MatE; InterPro 99.6 1.2E-15 2.6E-20 140.8 8.0 161 150-332 1-162 (162)
30 PRK10459 colanic acid exporter 99.6 5E-12 1.1E-16 138.3 34.2 202 138-366 203-405 (492)
31 PF13440 Polysacc_synt_3: Poly 99.5 4.2E-11 9E-16 118.6 30.4 246 160-445 2-250 (251)
32 PRK15099 O-antigen translocase 99.5 6.9E-12 1.5E-16 134.2 22.8 201 137-365 210-411 (416)
33 COG2244 RfbX Membrane protein 99.4 6.7E-11 1.5E-15 129.1 26.5 187 138-351 209-396 (480)
34 KOG2864 Nuclear division RFT1 98.9 9.7E-06 2.1E-10 83.0 34.6 415 139-580 5-449 (530)
35 KOG1347 Uncharacterized membra 98.9 9E-08 1.9E-12 102.8 19.4 202 376-578 24-228 (473)
36 PF04506 Rft-1: Rft protein; 98.8 3.8E-06 8.3E-11 91.6 29.5 286 296-581 149-471 (549)
37 PF07260 ANKH: Progressive ank 98.7 4.9E-05 1.1E-09 74.8 28.2 258 138-423 7-284 (345)
38 PF14667 Polysacc_synt_C: Poly 98.6 4.9E-06 1.1E-10 75.0 17.8 81 286-368 2-82 (146)
39 PF01943 Polysacc_synt: Polysa 98.1 0.00081 1.8E-08 66.9 23.2 186 383-579 2-190 (273)
40 PF04506 Rft-1: Rft protein; 98.0 0.0008 1.7E-08 73.7 22.1 217 140-369 251-473 (549)
41 PF13440 Polysacc_synt_3: Poly 97.9 0.0026 5.5E-08 62.6 22.2 161 404-578 9-171 (251)
42 PF14667 Polysacc_synt_C: Poly 97.9 5.6E-05 1.2E-09 68.0 9.3 80 502-581 2-81 (146)
43 KOG2864 Nuclear division RFT1 97.8 0.0097 2.1E-07 61.6 24.0 211 141-371 238-454 (530)
44 COG4267 Predicted membrane pro 97.5 0.13 2.9E-06 52.1 36.5 370 158-571 34-437 (467)
45 PF07260 ANKH: Progressive ank 97.1 0.18 3.9E-06 50.3 22.0 155 376-536 7-166 (345)
46 COG4267 Predicted membrane pro 90.0 26 0.00056 36.2 21.3 143 421-577 65-208 (467)
47 PF06570 DUF1129: Protein of u 51.1 2E+02 0.0044 27.2 11.0 7 559-565 181-187 (206)
48 PF05975 EcsB: Bacterial ABC t 48.4 3.5E+02 0.0076 28.4 14.6 39 450-488 88-126 (386)
49 PF04505 Dispanin: Interferon- 38.7 1.6E+02 0.0035 23.3 6.9 37 436-472 37-73 (82)
50 PF04306 DUF456: Protein of un 31.4 3.7E+02 0.008 23.8 10.4 21 378-398 102-122 (140)
51 TIGR01299 synapt_SV2 synaptic 29.1 9.6E+02 0.021 27.8 18.6 7 300-306 278-284 (742)
52 PF05977 MFS_3: Transmembrane 28.5 8.3E+02 0.018 26.9 36.8 44 149-192 17-62 (524)
53 PF06808 DctM: DctM-like trans 28.2 7.5E+02 0.016 26.3 17.9 82 372-474 202-283 (416)
54 PF05975 EcsB: Bacterial ABC t 27.1 7.5E+02 0.016 25.9 15.6 35 234-268 90-124 (386)
55 COG4536 CorB Putative Mg2+ and 26.3 3.9E+02 0.0084 27.9 8.7 42 234-275 117-158 (423)
56 KOG1289 Amino acid transporter 25.8 6.9E+02 0.015 27.6 10.9 34 231-264 279-312 (550)
57 PF01102 Glycophorin_A: Glycop 23.0 1.4E+02 0.0031 25.7 4.3 27 555-581 66-92 (122)
58 PF01595 DUF21: Domain of unkn 22.7 5.8E+02 0.013 23.1 14.7 53 439-491 102-154 (183)
59 PRK04288 antiholin-like protei 22.2 7.3E+02 0.016 24.1 16.3 142 141-334 86-228 (232)
60 COG0798 ACR3 Arsenite efflux p 21.8 8.9E+02 0.019 25.0 26.7 95 238-335 9-103 (342)
61 PTZ00370 STEVOR; Provisional 20.2 99 0.0022 30.7 3.1 20 571-590 272-292 (296)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.1e-52 Score=449.81 Aligned_cols=430 Identities=29% Similarity=0.436 Sum_probs=399.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (599)
+...|+++++++|++++++++.+++++|++++||++++++|+.++++++.+++..+. .|+..+++++++|++|++|
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~-~gl~~g~~~liaq~~Ga~~--- 88 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIF-IGLGTGTTVLVAQAIGAGD--- 88 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHcCCc---
Confidence 346899999999999999999999999999999999999999999999999999764 4899999999999999988
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHH
Q 007544 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (599)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~ 297 (599)
+++.++...++++++++++++..++.+.+.++++.+++.+++ +.+.+.+|+++..++.|+..
T Consensus 89 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~ 150 (455)
T COG0534 89 ----------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGAPFAL 150 (455)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998776 89999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHh-cC-CChhHHHHHHHHHHHHHHHHHHHHHhhccc---c---
Q 007544 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-CQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV---L--- 369 (599)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~-~~-~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~---~--- 369 (599)
++..+.+++|+.||+++|++.+++++++|+++||+|+++ ++ +|+.|+|+||++++++.+++.++++.++.+ .
T Consensus 151 ~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~ 230 (455)
T COG0534 151 LSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK 230 (455)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 999999999999999999999999999999999999998 57 999999999999999999999999977653 1
Q ss_pred CCCCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007544 370 MPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSK 449 (599)
Q Consensus 370 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~ 449 (599)
...+++++.+|++++.|.|..++.+.+...+...+.+++++|++.+|+|+++.++.++.++++.|++++.++++++++|+
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12356778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChH
Q 007544 450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFR 529 (599)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~ 529 (599)
+|++++|+..+.++++++.++...+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+++||.||+|
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhcccc-CChHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccc
Q 007544 530 YAACSMMLVGA-MSSTFLLYAPRA-TGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDL 591 (599)
Q Consensus 530 ~~~~~~~~~~l-~~~~~~~~l~~~-~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~ 591 (599)
.+++.+++... +.+++.+++... +|..|+|+++.++..+..+...+++ ++.+|++.....
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 452 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRL--RRGRWRRKAVAA 452 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhc
Confidence 99987776433 345555566555 9999999999999999999998886 566677654443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.7e-47 Score=413.42 Aligned_cols=428 Identities=22% Similarity=0.270 Sum_probs=383.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (599)
.+..|+++++++|.++++++..+.+++|+.+++++|++++|+++++.++..+...+ ..|+..+.+++++|++|+++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~-~~gl~~g~~~lvsq~~Ga~~--- 100 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAF-FAAIDLGTTVVVAFSLGKRD--- 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC---
Confidence 34589999999999999999999999999999999999999999999998777654 55899999999999999998
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHH
Q 007544 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (599)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~ 297 (599)
+++.++.+++++.++++++++.+++.+++.++++.+++...|+++.+.+..|+++..++.|+..
T Consensus 101 ----------------~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~ 164 (478)
T PRK10189 101 ----------------RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAA 164 (478)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999532334589999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHHHHHHHHHHHHHHHHHHHHHhhc-cccCC-
Q 007544 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC----QLGMPGAAISTVVSQYIVAVTMIWFLNKK-VVLMP- 371 (599)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~----~~Gv~Gaa~at~is~~i~~~~~~~~l~~~-~~~~~- 371 (599)
+...+++++|+.||++.+++..++..++|++++++|++++ ++|+.|+++||.+++++..++.++++.++ ....+
T Consensus 165 ~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
T PRK10189 165 ITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRI 244 (478)
T ss_pred HHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccee
Confidence 9999999999999999999999999999999999999863 79999999999999999998877766533 21111
Q ss_pred ------CCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 372 ------PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIAS 445 (599)
Q Consensus 372 ------~~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~ 445 (599)
.+.++..+|++++.|.|..++.+...+.+.+.+.+++++|++++|+|+++.++..+.+++..|++++.++++++
T Consensus 245 ~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~ 324 (478)
T PRK10189 245 SLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGT 324 (478)
T ss_pred eeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12355678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 007544 446 YVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGV 525 (599)
Q Consensus 446 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~ 525 (599)
++|++|++++|+..+.++++++++++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.++|.
T Consensus 325 ~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~ 404 (478)
T PRK10189 325 RLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGA 404 (478)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHH-HHHHHHHHh--ccccCChHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Q 007544 526 SDFRYAACSMMLVG-AMSSTFLLY--APRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFL 587 (599)
Q Consensus 526 g~~~~~~~~~~~~~-l~~~~~~~~--l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~~~w~~~ 587 (599)
||++.+++.+++.. ++.+++.++ ...++|+.|+|++..+++++..++.++++ ++++|++.
T Consensus 405 G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~--~~~~W~~~ 467 (478)
T PRK10189 405 RDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRM--VSGRWLWK 467 (478)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH--HcCccccC
Confidence 99999998766543 233333333 33469999999999999999998887775 77789873
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.8e-47 Score=412.96 Aligned_cols=434 Identities=19% Similarity=0.207 Sum_probs=387.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhh
Q 007544 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (599)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (599)
+++..|++++.++|.++.+++..+.+++|+.+++|+|++++|+++++.++.+.+..+ ..|+..+.+++++|++|+++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~-~~gl~~~~~~i~aq~~Ga~~-- 81 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIF-CVGVIAAVGTLVAIRHGAGD-- 81 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC--
Confidence 345689999999999999999999999999999999999999999999998888755 56899999999999999987
Q ss_pred hhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHH
Q 007544 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (599)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~ 296 (599)
+++.++.+.+++.+.++++++..++++ +.++++++++.+++ +.+.+..|+++..++.|+.
T Consensus 82 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~~~~~ 141 (464)
T PRK00187 82 -----------------IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFALPGY 141 (464)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998777655 57999999987665 9999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHHHHHHHHHHHHHHHHHHHHHhhcccc--C
Q 007544 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC----QLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL--M 370 (599)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~----~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~--~ 370 (599)
.+...+++++|+.||++.+++.+++..++|+++|++|++++ ++|+.|+++||.+++++..+.++++++++... .
T Consensus 142 ~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
T PRK00187 142 LSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAY 221 (464)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999863 58999999999999999888777666543211 1
Q ss_pred --C---CCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 371 --P---PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIAS 445 (599)
Q Consensus 371 --~---~~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~ 445 (599)
+ .++++..+|+++|.++|.+++++.+...+.+++.+++++|++++|++++++++..+.+++..|++++..++++|
T Consensus 222 ~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq 301 (464)
T PRK00187 222 PLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQ 301 (464)
T ss_pred hhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23455678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC--Ch---HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007544 446 YVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK--DP---KVLGIVGTGVLFVSASQPINALAFIFDG 520 (599)
Q Consensus 446 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~--d~---~v~~~~~~~l~i~~~~~~~~~~~~i~~~ 520 (599)
++|++|++++++..+.++.++++++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.++.+
T Consensus 302 ~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~ 381 (464)
T PRK00187 302 HYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMG 381 (464)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999974 44 6888999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHH-HHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccccc
Q 007544 521 LHYGVSDFRYAACSMMLVG-AMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEG 593 (599)
Q Consensus 521 ~l~g~g~~~~~~~~~~~~~-l~~~~~~~~l~--~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~ 593 (599)
+++|.||+|.+++..++.. ++.+++.+++. +++|+.|+|+++.++.++..+..+++++|++.+|.+....+|.
T Consensus 382 ~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (464)
T PRK00187 382 AIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLRKARASEA 457 (464)
T ss_pred hHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 9999999999999887765 55555544443 5689999999999999999998888888876666665444443
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.8e-46 Score=399.18 Aligned_cols=412 Identities=22% Similarity=0.303 Sum_probs=363.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhh
Q 007544 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGRL-GSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (599)
Q Consensus 140 ~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~l-g~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (599)
..|+++++++|+++++++..+++++|+.++||+ |++++|+++++.++.+....+ ..|+..+.+++++|++|++|
T Consensus 7 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~~---- 81 (441)
T PRK10367 7 SDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAKN---- 81 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC----
Confidence 378999999999999999999999999999997 677899999999998888755 45788999999999999987
Q ss_pred hhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHH
Q 007544 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVV 298 (599)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l 298 (599)
+++.++..++++.++++++++..++...+.++++.+++.+++ +.+.+.+|+++..++.|+..+
T Consensus 82 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~~~~~ 144 (441)
T PRK10367 82 ---------------PQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEA--VLEQARRFLEIRWLSAPASLA 144 (441)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999888888889999999988776 899999999999999999999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc--CC---CC
Q 007544 299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL--MP---PK 373 (599)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~--~~---~~ 373 (599)
..++++++|+.||++.|++..++++++|+++|++|++++++|+.|+++||.+++++.+++.++++.++.+. .+ .+
T Consensus 145 ~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~ 224 (441)
T PRK10367 145 NLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLK 224 (441)
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhh
Confidence 99999999999999999999999999999999999999899999999999999999998887777653211 11 11
Q ss_pred cc-hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 007544 374 MG-ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (599)
Q Consensus 374 ~~-~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~ 452 (599)
.+ +..+|+++|.+.|..++.....+.+.+.+.+++++|++++|+|+++.++.++.+++..|++++.+|+++|++|+||+
T Consensus 225 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~ 304 (441)
T PRK10367 225 TAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDG 304 (441)
T ss_pred hhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCH
Confidence 12 23578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---ChH
Q 007544 453 KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS---DFR 529 (599)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g---~~~ 529 (599)
+++|+..+.+++++++++.+.+++++++++++..+|++|+|+.+.+..++++.++..+......++.++++|.+ |+|
T Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~ 384 (441)
T PRK10367 305 SQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMR 384 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999998876333334444444455555 599
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 007544 530 YAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (599)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l 577 (599)
.+++.+.+...+ ..+..+.+|+.|+|++..++..+..++..+++
T Consensus 385 ~~~~~~~~~~~~----~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~ 428 (441)
T PRK10367 385 NSMAVAAAGFAL----TLLTLPWLGNHGLWLALTVFLALRGLSLAAIW 428 (441)
T ss_pred HHHHHHHHHHHH----HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 998877765322 11122458999999999999999999888775
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.8e-46 Score=401.88 Aligned_cols=423 Identities=18% Similarity=0.224 Sum_probs=386.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 007544 135 SHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKN 213 (599)
Q Consensus 135 ~~~~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~ 213 (599)
+.+++..|++++.++|+++++++..+++++|+.++++ +|+++++++++++++.++...+ ..++..+.+++++|++|++
T Consensus 5 ~~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~-~~~~~~g~~~lvsq~~Ga~ 83 (453)
T PRK09575 5 MMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGI-GLMVGMGTGSLLSIKRGEG 83 (453)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH-HHHHhccHHHHHHHHhcCC
Confidence 4456778999999999999999999999999999999 5999999999999998887754 5577888899999999988
Q ss_pred hhhhhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhH
Q 007544 214 LTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGS 293 (599)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~ 293 (599)
+ +++.++.+++++.+.++++++.+++.++++++++.+++.+++ +.+.+.+|+++..++.
T Consensus 84 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~~~ 142 (453)
T PRK09575 84 D-------------------LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR--TLELALQYIQVLIWGC 142 (453)
T ss_pred C-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHHHHHHHHHHHHHHH
Confidence 7 888999999999999999999999999999999999987766 8899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCC--
Q 007544 294 PAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMP-- 371 (599)
Q Consensus 294 ~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~~~-- 371 (599)
|+..+...+..++|+.||++.+++.++++.++|++++++|++.+++|+.|+++||++++++..++.+++++++....+
T Consensus 143 ~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 222 (453)
T PRK09575 143 LFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLT 222 (453)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 999999999999999999999999999999999999999999889999999999999999999998887765433222
Q ss_pred ---CCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007544 372 ---PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGS-DAMAAHQICMQVWLAVSLLTDALAASGQALIASYV 447 (599)
Q Consensus 372 ---~~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~-~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~ 447 (599)
.++++..+|++++.|.|..++.....+...+.+.+++++|+ +++|+++++.++..+.+++..|++++..|++++++
T Consensus 223 ~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~ 302 (453)
T PRK09575 223 LKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYF 302 (453)
T ss_pred eccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 23445567999999999999999999999999999999995 68999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC-ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 007544 448 SKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK-DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (599)
Q Consensus 448 g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~-d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g 526 (599)
|+||++++|+..+.++++++..+++.+++++.+++++.++|++ |+|+.+.+..++++.+++.+++++..+..++++|.|
T Consensus 303 Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g 382 (453)
T PRK09575 303 GARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVN 382 (453)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999995 789999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007544 527 DFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (599)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~ 579 (599)
|++.+++.++...++.+++.+.++..+|+.|+|+++.++.++..++.++++++
T Consensus 383 ~~~~~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 383 QGGKALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999988776666677777777666899999999999999988877766643
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=5.6e-45 Score=394.14 Aligned_cols=425 Identities=21% Similarity=0.248 Sum_probs=383.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (599)
++..|++++.++|+++++++..+.+++|+.+++++|++++++++++..+...+.. +..|+..+..+.++|++|+++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~-~~~g~~~a~~~~vs~~~g~~~--- 83 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVIL-FGHGLLLALTPIVAQLNGAGR--- 83 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCC---
Confidence 3558999999999999999999999999999999999999999999888766654 455888999999999999987
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHH
Q 007544 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (599)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~ 297 (599)
+++.++.+++++.+.++++++.+++++.+.+++..+++.+++ +.+.+..|+++..++.|+..
T Consensus 84 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~yl~i~~~~~~~~~ 145 (456)
T PRK01766 84 ----------------RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPE--VADIAVGYLHALLWGIPAYL 145 (456)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999987665 88899999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc----
Q 007544 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF----CQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL---- 369 (599)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~----~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~---- 369 (599)
+...+++++|+.||++++++.++++.++|++++++++++ +.+|+.|+++||.+++++..++.+++++++.+.
T Consensus 146 ~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~ 225 (456)
T PRK01766 146 LYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFR 225 (456)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHH
Confidence 999999999999999999999999999999999999974 368999999999999999999998888654321
Q ss_pred C---CCCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 370 M---PPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASY 446 (599)
Q Consensus 370 ~---~~~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~ 446 (599)
. +.+.++..+|++++.++|..++...+.+.+.+++.+++++|++++|+++++.++.++..+++.|++.+..+.++++
T Consensus 226 ~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 226 LFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred hhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 007544 447 VSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (599)
Q Consensus 447 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g 526 (599)
+|++|++++|+..+.+++++++++++.+++++.+++++.++|++|+++.+.+..++++..+..++++++.+..++++|.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHH-HHHHHHHHh--ccccCChHHHHHHHHHHHHHHHHHHHHHHHhhCCCccc
Q 007544 527 DFRYAACSMMLVG-AMSSTFLLY--APRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWF 586 (599)
Q Consensus 527 ~~~~~~~~~~~~~-l~~~~~~~~--l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~~~w~~ 586 (599)
|++.+++..++.. ++.+++.++ ..+.+|+.|+|+++.++.++..++.++++++ .+|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 446 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK--LQRQP 446 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 9999999887754 445554444 3356999999999999999999988877633 44654
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.4e-35 Score=324.95 Aligned_cols=415 Identities=14% Similarity=0.088 Sum_probs=350.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchh-hhhhhHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHhhhhhhhhh
Q 007544 144 LIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVEL-ASAGVSISIFNIVSKLFN-IPLLSVATSFVAEDIAKNLTKDLAA 220 (599)
Q Consensus 144 l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~l-aa~~~a~~i~~~~~~~~~-~gl~~~~~~~va~~~~~~~~~~~~~ 220 (599)
++|.+.-..++++++.+++++|..+++| +|++++ ++++++.++++.+..+.. .|+.++ ++++..+++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~----- 73 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKK----- 73 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhh-----
Confidence 5788899999999999999999999999 999999 899999999988776544 344444 44443333331
Q ss_pred ccCCCCCCCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHH
Q 007544 221 GLEGNGKPPNGTTERKQLSSVSTALLLAV-GIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVS 299 (599)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~ 299 (599)
+++.++.+.+.+.... +.+++.+++.+++++++..+++.+.+++..+.+..|++++.++.|+..+.
T Consensus 74 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 74 -------------EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344545555555444 44445567788889999988842222236788999999999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHH--HHHHHHHHHHHHHHHHHHhhccccCCC--Ccc
Q 007544 300 LALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAA--ISTVVSQYIVAVTMIWFLNKKVVLMPP--KMG 375 (599)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa--~at~is~~i~~~~~~~~l~~~~~~~~~--~~~ 375 (599)
...++++|+.+|++.+++.+++.++++++..+++. +++|+.|++ +++++++.+..++.+++++|+..++++ +++
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFR 218 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCC
Confidence 99999999999999999999999988877544443 579999998 999999999999888877665433333 345
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHH
Q 007544 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSL-LTDALAASGQALIASYVSKGDFKT 454 (599)
Q Consensus 376 ~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~-~~~~l~~a~~~~is~~~g~~~~~~ 454 (599)
+..+|++++++.|..+..+...+...+++.+.+.+|++++++|+.+.++..+... +..+++++..|.++++++++|.++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 5688999999999999999999999999998888899999999999999987765 578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC----ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHH
Q 007544 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK----DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRY 530 (599)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~----d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~ 530 (599)
+|+..++++++..++++|.++++.++++++..+|.+ |+|.++.+..++.+++++.++.++..++.+.+++.||+|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 999999999999999999999999999999999976 5678888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007544 531 AACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (599)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~ 581 (599)
+++..+...++++++++++.+.+|+.|+|+++.+++.+..++..++++++.
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998888888888888878899999999999999999888887775553
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=3.2e-33 Score=305.24 Aligned_cols=406 Identities=17% Similarity=0.214 Sum_probs=348.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhhccC
Q 007544 145 IVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLE 223 (599)
Q Consensus 145 ~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~ 223 (599)
.+.+.|.+++++++.+.+++|+.+++| +|++++|+++++.++.+++..+...|+..+..+.++|+.+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~--------- 72 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKND--------- 72 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccc---------
Confidence 467899999999999999999999999 8999999999999999998888788999999999999887776
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Q 007544 224 GNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQ 303 (599)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~~ 303 (599)
+++.++.+.+++.+.++++++.+++++++++++...++.+++ ...++++..+..++..+....+
T Consensus 73 ----------~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~ 136 (488)
T TIGR02900 73 ----------RKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSSVLK 136 (488)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999899999999887765443 2357788889999999999999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHhhccc-cCC------
Q 007544 304 GIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-----CQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV-LMP------ 371 (599)
Q Consensus 304 ~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~-----~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~-~~~------ 371 (599)
+++|+.+|++..++.++++.+++++++..+++. ..+|+.|+++++.+++++..++.+++.+++.+ +.+
T Consensus 137 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (488)
T TIGR02900 137 GYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDY 216 (488)
T ss_pred HHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999999998887766643 24678899999999999999988776654332 111
Q ss_pred CCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----Cc---hHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007544 372 PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ----GS---DAMAAH----QICMQVWLAVSLLTDALAASGQ 440 (599)
Q Consensus 372 ~~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~----g~---~~vaa~----~i~~~i~~~~~~~~~~l~~a~~ 440 (599)
.+.+++.+|++++++.|.++.++...+...+++.++++. |. ++.+.+ +++.++..+...+..+++++..
T Consensus 217 ~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~ 296 (488)
T TIGR02900 217 KSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALV 296 (488)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHH
Confidence 122345789999999999999999999999999888764 32 222232 3556677777777899999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007544 441 ALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDG 520 (599)
Q Consensus 441 ~~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~ 520 (599)
|.+++..|++|.++.++..++.+++...+++|.++++.++++++..+|.++++ +..+++++++..++.++..+..+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886543 56788999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007544 521 LHYGVSDFRYAACSMMLVGAMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (599)
Q Consensus 521 ~l~g~g~~~~~~~~~~~~~l~~~~~~~~l~--~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~ 579 (599)
++++.||+|..++.+.+..++++++++.+. +.+|+.|+|+++.+++++..++..++.++
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888888777766 88999999999999999998888887754
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=8.3e-36 Score=317.14 Aligned_cols=429 Identities=21% Similarity=0.228 Sum_probs=387.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhh
Q 007544 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (599)
Q Consensus 139 ~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (599)
.+.|++++++.|+++..+.+++.+++++.++||+|+.++++.++++...+....-+..|+.++..++++|++|.++
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~---- 100 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK---- 100 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc----
Confidence 4579999999999999999999999999999999999999999999999997777778999999999999999988
Q ss_pred hhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHH
Q 007544 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVV 298 (599)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l 298 (599)
++....+.+++..+.+..+++... ++.+.++|+..++++++ +...+..|.+++++..+.+..
T Consensus 101 ---------------~~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~--i~~~a~~y~~~~ip~~~a~~~ 162 (473)
T KOG1347|consen 101 ---------------FTALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPD--ISRDAGSYAFMLIPGLFSYAV 162 (473)
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChh--HHHHHhhhHhhhcchhhhhHH
Confidence 888899999999999999998777 66778999999999888 999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCCC--cc
Q 007544 299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKV-VLMPPK--MG 375 (599)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~-~~~~~~--~~ 375 (599)
...++.++|+++++.+..+...+..++|+.+++++++.+++|+.|++++..+++|+...++.+|..... ...|.. .+
T Consensus 163 ~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~ 242 (473)
T KOG1347|consen 163 SFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE 242 (473)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh
Confidence 999999999999999999999999999999999999999999999999999999999999999986644 222222 22
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007544 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGS--DAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (599)
Q Consensus 376 ~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~--~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~ 453 (599)
..++++++++++|..++...+++.+.+...+.+.+++ .++++.+++.++....++++.+++.+..+++++.+|+|+++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 5678899999999999999999999999999999974 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHH
Q 007544 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (599)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~ 533 (599)
.+|.....++..+...+...+..+...++.+..+|++|+|+.+.+.+..++++++.++++.+.++.++.+|.|+++..++
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHH----HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccc
Q 007544 534 SMML----VGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLE 592 (599)
Q Consensus 534 ~~~~----~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~ 592 (599)
.+.. .+++...+. -+..++|..|+|+|+..+..+......+.. .+.+|.+...+.+
T Consensus 403 vnl~~yyl~G~p~g~~l-~~~~~~g~~glw~G~~~~~~~~~~~l~~~~--~~tdW~~~~~~a~ 462 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYL-GFFTKFGVKGLWIGILLGFSVQTLVLAIVT--ARTDWKNQAEKAF 462 (473)
T ss_pred EeeeeeeEecCcceeEE-EEEEecCceEEEeehHHHHHHHHHHHHHhe--eeccHHHHHHHHH
Confidence 5554 344433222 244679999999999999777766666653 6688997655543
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.1e-32 Score=286.96 Aligned_cols=334 Identities=31% Similarity=0.437 Sum_probs=306.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhhccCCCCCCC
Q 007544 150 PAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (599)
Q Consensus 150 p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (599)
|.++.+++..+.+.+|+.+++++|++++++++++.++.+.... +..|+..+..+.+++++|+++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~-~~~~i~~~~~~~~s~~~g~~~--------------- 64 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFS-ILMGLGTATTALVAQAVGAGN--------------- 64 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHH-HHHHHHHhHHHHHHHHHCCCC---------------
Confidence 7789999999999999999999999999999999888777765 455899999999999998876
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 007544 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGF 309 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~ 309 (599)
+++.++.+++.+.+.++++++.+++++++++++..+++.+++ ..+.+..|++++.+..++..+....++++|+.
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 138 (342)
T TIGR00797 65 ----YQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELAQDYLRILILGIPAYLLNFVLRGFLRGQ 138 (342)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788899999999999999999999999999999999875554 77889999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH-hcC-CChhHHHHHHHHHHHHHHHHHHHHHhhccc-c----CCCCcchhhHHHH
Q 007544 310 KDTKTPVLCLGIGNLLAVFLFPILIY-FCQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV-L----MPPKMGALQFGDY 382 (599)
Q Consensus 310 ~~~~~~~~~~i~~~vv~i~l~~lli~-~~~-~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~-~----~~~~~~~~~~~~~ 382 (599)
||++.+++.+++++++++++++++++ .++ +|+.|+++++.+++++..++.+++++++.+ + .+.++++..+|++
T Consensus 139 ~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 218 (342)
T TIGR00797 139 GDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRL 218 (342)
T ss_pred CCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHH
Confidence 99999999999999999999999997 567 889999999999999999998887765221 1 1244566788999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007544 383 VKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFV 462 (599)
Q Consensus 383 l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~ 462 (599)
++++.|.++.++..++...+++.+++.+|++++++|+++.++.++..+++.+++++..|.++++++++|.+++++..+++
T Consensus 219 ~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T TIGR00797 219 LKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVA 298 (342)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHH
Q 007544 463 LKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFV 505 (599)
Q Consensus 463 l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~ 505 (599)
+++.+.++++.+++++++++++.++|++|+++.+.+..+++++
T Consensus 299 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 299 LKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.1e-32 Score=289.46 Aligned_cols=401 Identities=15% Similarity=0.112 Sum_probs=344.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhhcc
Q 007544 144 LIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGL 222 (599)
Q Consensus 144 l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~ 222 (599)
++|.+.....+.++..+.+++-..++.| +|+++++.++...++...+..+...|+.++.++.++|+ ++|
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~-------- 72 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ-------- 72 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC--------
Confidence 5678888889999999999999999999 99999999999999999888887888888888888775 222
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHH
Q 007544 223 EGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLAL 302 (599)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~ 302 (599)
+++.++.+.+++.+.++.+++.+++++++.+|+...++.+++ ...+..+..+..++..+....
T Consensus 73 -----------~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 135 (416)
T PRK15099 73 -----------PQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWANLL 135 (416)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999987765543 335566666667777888899
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccc----cCCCCcchhh
Q 007544 303 QGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV----LMPPKMGALQ 378 (599)
Q Consensus 303 ~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~----~~~~~~~~~~ 378 (599)
++.+|+.+|++.++...+++.++|+++ +++++.. .|+.|+++|+++++.+..+..+++++++.. +.+.+++++.
T Consensus 136 ~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (416)
T PRK15099 136 LAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGL 213 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHH
Confidence 999999999999999999999999887 5555432 399999999999999998887777755432 1234556677
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 007544 379 FGDYVKSGGFLLGRTLAVLITMTLGTSMAA-RQGSDAMAAHQICMQVWLA-VSLLTDALAASGQALIASYVSKGDFKTVR 456 (599)
Q Consensus 379 ~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~-~~g~~~vaa~~i~~~i~~~-~~~~~~~l~~a~~~~is~~~g~~~~~~~~ 456 (599)
+|+++++|.|...+++...+...+++.+++ .+|++++|+|+++.++... ...+..+++++.+|.+++. +|.++.+
T Consensus 214 ~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~ 290 (416)
T PRK15099 214 AGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDIT 290 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHH
Confidence 899999999999999999999999999996 7899999999999999774 5888999999999999995 6788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007544 457 EITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMM 536 (599)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~ 536 (599)
+..++..+....++++.+++++++++++..+|.+|+ ++.+.+++++++++.++......+...+.+.++++..+...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 368 (416)
T PRK15099 291 REIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEV 368 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999866 555788999999999988888877777778888888888887
Q ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 537 LVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (599)
Q Consensus 537 ~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~ 578 (599)
...++..++++++++.+|..|++++..+++++..++..+...
T Consensus 369 ~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 369 SQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888889999999999999999999998887766553
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=4.4e-30 Score=271.11 Aligned_cols=423 Identities=12% Similarity=0.050 Sum_probs=361.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcc-hhhhhhhHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHhhhhhh
Q 007544 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSV-ELASAGVSISIFNIVSKLFNIPL-LSVATSFVAEDIAKNLTKD 217 (599)
Q Consensus 141 ~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~-~laa~~~a~~i~~~~~~~~~~gl-~~~~~~~va~~~~~~~~~~ 217 (599)
.+.++|.++-.....+++++.++++..++++ +|+. ..+|+.+++.++|.+..++..|- .++..|...++..++.
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~--- 82 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEG--- 82 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcch---
Confidence 5678889999999999999999999999999 9996 47899999999999999888764 2223333333322221
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCC-CccchHHHHHHHHHHHhhHHHH
Q 007544 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS-ASAMHGPAKKFLMLRALGSPAF 296 (599)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~a~~yl~~~~~~~~~~ 296 (599)
+++.++.......+...+.+.++++..+++|++.+.+..+. |++....+....+++.|.+++.
T Consensus 83 ----------------~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~i 146 (518)
T COG0728 83 ----------------EEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFI 146 (518)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555557777778888889999999995443332 2112236888889999999999
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--
Q 007544 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKM-- 374 (599)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~~~~~~-- 374 (599)
.+...+.++||+.+++..|.+.+++.|+.-+.....+......-..+.++|++++-+++.++.++.++|.+...++++
T Consensus 147 sL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~ 226 (518)
T COG0728 147 SLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF 226 (518)
T ss_pred HHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC
Confidence 999999999999999999999999999988856665554332246789999999999999999999999876555554
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChH
Q 007544 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIASYVSKGDFK 453 (599)
Q Consensus 375 ~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~-~~~~~l~~a~~~~is~~~g~~~~~ 453 (599)
++.+.|++++...|..+...+.++...+++.+++.+.+.+++.++.+.++++++. .+..+++++..|.+|++..++|.+
T Consensus 227 ~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~ 306 (518)
T COG0728 227 KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP 306 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 4468999999999999999999999999999999999999999999999999877 667999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC----ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChH
Q 007544 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK----DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFR 529 (599)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~----d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~ 529 (599)
+.++..+++++.++++.+|.++.+.++++++++++.. +++....+.+.+..+++++++..+..++...+++.+|+|
T Consensus 307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999743 566688899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 007544 530 YAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSG 582 (599)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~~ 582 (599)
.|+...++..++++.+++++.+.+|..|++.+..++.++.+...++.++++..
T Consensus 387 tP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 387 TPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred cChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999888899999999999999999998988888866543
No 13
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=6.5e-30 Score=274.28 Aligned_cols=389 Identities=14% Similarity=0.137 Sum_probs=343.9
Q ss_pred cCcc-hhhhhhhHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHhhhhhhhhhccCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 007544 172 LGSV-ELASAGVSISIFNIVSKLFNI-PLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAV 249 (599)
Q Consensus 172 lg~~-~laa~~~a~~i~~~~~~~~~~-gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (599)
+|.. +.+++.++..+++.+..++.. ++.++..|...+.. +++ +++.++..++.+.+..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~-------------------~~~~~~f~~~~~~~~~ 64 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKG-------------------EEEARRFISTLLTILL 64 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-------------------HHHHHHHHHHHHHHHH
Confidence 6765 478999999999999877653 34455555554443 222 6778888899999999
Q ss_pred HHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 007544 250 GIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFL 329 (599)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l 329 (599)
++.++++++.+++++++.+++....+++..+.+..+++++.+..++..+...+.+++|+++|+..|...+++.|+..++.
T Consensus 65 ~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~ 144 (451)
T PF03023_consen 65 IISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILS 144 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876666668899999999999999999999999999999999999999999988876664
Q ss_pred HHHHHHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--chhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007544 330 FPILIYFCQLG---MPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKM--GALQFGDYVKSGGFLLGRTLAVLITMTLGT 404 (599)
Q Consensus 330 ~~lli~~~~~G---v~Gaa~at~is~~i~~~~~~~~l~~~~~~~~~~~--~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~ 404 (599)
..++. ..+| +.+.++|.+++..++.++++...+|...+.++++ +++..|++++...|.++.....++...+++
T Consensus 145 ~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~ 222 (451)
T PF03023_consen 145 LLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDR 222 (451)
T ss_pred HHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3567 8999999999999999999999998776655544 455789999999999999999999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007544 405 SMAARQGSDAMAAHQICMQVWLAVSL-LTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGS 483 (599)
Q Consensus 405 ~l~~~~g~~~vaa~~i~~~i~~~~~~-~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~ 483 (599)
.+++.+++..+++++.+.++.+++.. +..+++++..|.+++...++|.++.++..++.++..+.+.+|.++.+..++++
T Consensus 223 ~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~ 302 (451)
T PF03023_consen 223 ALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEP 302 (451)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999998774 56799999999999999999999999999999999999999999999999999
Q ss_pred hhcccC----CChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccccCChHHHH
Q 007544 484 LAPLFT----KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVW 559 (599)
Q Consensus 484 l~~lf~----~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~ 559 (599)
+++++. .|.+..+.+..++.+++++.++.++..++...+++.+|+|.++...++..++++.+.+.+.+.+|..|++
T Consensus 303 iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Gla 382 (451)
T PF03023_consen 303 IVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGLA 382 (451)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999975 3677789999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Q 007544 560 AGLTLFMGLRTVAGFVRLLSKSG 582 (599)
Q Consensus 560 ~a~~~~~~~~~i~~~~~l~~~~~ 582 (599)
+++.++..+.+++.++.++++.+
T Consensus 383 la~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 383 LATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998877655
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=2.3e-25 Score=243.59 Aligned_cols=396 Identities=12% Similarity=0.091 Sum_probs=328.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 007544 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLA 219 (599)
Q Consensus 141 ~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~ 219 (599)
.++..+.+....++++...+.+++...++.| +|++++|.++.+..+.+++..+...|+..+. + + ++++
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai---i-~----~~~~--- 72 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI---I-Q----RQDI--- 72 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH---H-h----cccC---
Confidence 5778888999999999999999999999999 9999999999999999999988888765533 1 1 1111
Q ss_pred hccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHH
Q 007544 220 AGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVS 299 (599)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~ 299 (599)
. ++...+.+++.++.+++.+++.+++++++..+++.+ + ....+++..+..++..+.
T Consensus 73 --------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~~~~~~~~~~~~ 128 (492)
T PRK10459 73 --------------S---HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNP-E------LAPLIKTLSLAFVIIPIG 128 (492)
T ss_pred --------------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-h------hHHHHHHHHHHHHHHHHh
Confidence 1 123456677777788887787888888887776533 2 345677777888888888
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcchhhH
Q 007544 300 LALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQF 379 (599)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~~~~~~~~~~~ 379 (599)
...++.++..++++......++..++..++...+.+ .++|+.+.++++++++.+..++.++..+++ .+.++++++..+
T Consensus 129 ~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 206 (492)
T PRK10459 129 QQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-YRPALHFSLASV 206 (492)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-CCccceecHHHH
Confidence 889999999999999999999988888777766654 478999999999999988877655443332 222334566788
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHH
Q 007544 380 GDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVRE 457 (599)
Q Consensus 380 ~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~vaa~~i~~~i~~~~~~~-~~~l~~a~~~~is~~~g~~~~~~~~~ 457 (599)
|++++++.|.....+...+...+|+.+++++ |+++++.|+.+.++.+++... ...++++..|.+++. ++|.++.++
T Consensus 207 k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~ 284 (492)
T PRK10459 207 KPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRV 284 (492)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHH
Confidence 9999999999999999999999999998775 899999999999998875544 455788899999885 578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007544 458 ITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMML 537 (599)
Q Consensus 458 ~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~ 537 (599)
.+++.+++...+++|+++++.++++++..++.+++ +..+...+.++++..++..+..+...++++.||+|..+..+++
T Consensus 285 ~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~ 362 (492)
T PRK10459 285 GFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVF 362 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHH
Confidence 99999999999999999999999999999988765 6778899999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 007544 538 VGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (599)
Q Consensus 538 ~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l 577 (599)
..++.++..+.+...+|+.|+++++.++..+.++..++.+
T Consensus 363 ~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 363 KTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777776777789999999999999998888888766
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.93 E-value=4.3e-22 Score=217.08 Aligned_cols=398 Identities=17% Similarity=0.134 Sum_probs=313.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhh
Q 007544 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (599)
Q Consensus 140 ~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (599)
..+++.|.+.....+++.+.+.+++....++| +|+++.|.++.+.++..++..+...|+..+.+..++++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~---- 79 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE---- 79 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH----
Confidence 36788999999999999999999999999999 9999999999999999999999888888888877777643332
Q ss_pred hhccCCCCCCCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHH
Q 007544 219 AAGLEGNGKPPNGTTERKQLSS-VSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (599)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~ 297 (599)
+...... ....+.+.++.+.+.........+. ++ .....+++..+..+...
T Consensus 80 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~ 131 (480)
T COG2244 80 ---------------YLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DP------VLALLLRILSLALLLLP 131 (480)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Ch------hhHHHHHHHHHHHHHHH
Confidence 2222332 3333333333333333322222111 11 24456778899999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHh-hccccCCCCcc-
Q 007544 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLN-KKVVLMPPKMG- 375 (599)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~-~~~~~~~~~~~- 375 (599)
.....++++|+.++++...+..+.. ..-+...+.+. ......+.++..++......+...+.. ++....+..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (480)
T COG2244 132 LSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF 207 (480)
T ss_pred HHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc
Confidence 9999999999999999999994444 11112222222 134555667777777776666665553 22222333333
Q ss_pred -hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007544 376 -ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (599)
Q Consensus 376 -~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~ 453 (599)
+..+++.++++.|.........+...+|+.+++.+ |+++++.|+.+.++......+..+++.+..|.+++...+++.+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 67899999999999999999999999999999875 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHH
Q 007544 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (599)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~ 533 (599)
+.++..++.+++..++++|..+++.++++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 365 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLL 365 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 999999999999999999999999999999999998766 444888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHH
Q 007544 534 SMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVR 576 (599)
Q Consensus 534 ~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~ 576 (599)
...+..+.+..+++.+++.+|+.|+..+. .+.........+.
T Consensus 366 ~~~~~~i~~~~l~~~li~~~g~~g~~~a~-~~~~~~~~~~~~~ 407 (480)
T COG2244 366 ISLISALLNLILNLLLIPRFGLIGAAIAT-ASVIALALLLFYI 407 (480)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhhhHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999 3333333333333
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.84 E-value=3.4e-19 Score=191.38 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=196.9
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007544 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (599)
Q Consensus 375 ~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 454 (599)
.+..+|+++++++|.++.++.......+|+.++++++++++|+-+++.++..++..+..+++.+..+.++|++|+||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHH
Q 007544 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (599)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~ 534 (599)
+++....++.+.++++++..++...+++++..++..++|+.+.+.+|+.+..++.++..+...+.+++++.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc----CChHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007544 535 MMLVGAMSSTFLLYAPRA----TGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (599)
Q Consensus 535 ~~~~~l~~~~~~~~l~~~----~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~ 581 (599)
+++..+.++.++.+++.. +|+.|+++|+.++..+.+++.++++++++
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998877777655 99999999999999999998888886654
No 17
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.84 E-value=6.4e-19 Score=190.88 Aligned_cols=201 Identities=19% Similarity=0.150 Sum_probs=186.2
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 007544 378 QFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVRE 457 (599)
Q Consensus 378 ~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~ 457 (599)
.+|+++++++|.+++++...+...+++.+++++|++++|+++++.++..+.+.+..+++++..+++++++|++|++++++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~ 106 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARA 106 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC--CChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 007544 458 ITNFVLKIGVLTGVSLATILGLSFGSLAPLFT--KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSM 535 (599)
Q Consensus 458 ~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~--~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~ 535 (599)
..+.++.++++++++.+++.+.+++++..+|. .|+|+.+.+.+++++..++.++..+..++.++++|.||++.+++.+
T Consensus 107 ~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~ 186 (478)
T PRK10189 107 AARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLIN 186 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHH
Confidence 99999999999999999999999999999995 6899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcc------ccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 536 MLVGAMSSTFLLYAP------RATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (599)
Q Consensus 536 ~~~~l~~~~~~~~l~------~~~Gi~G~~~a~~~~~~~~~i~~~~~l~ 578 (599)
++..++++++.+.++ +++|+.|+|+|+.+++.+..++..+++.
T Consensus 187 ~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 187 GGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777666555443 3689999999999999998877665553
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.83 E-value=1.3e-18 Score=188.25 Aligned_cols=205 Identities=16% Similarity=0.122 Sum_probs=186.8
Q ss_pred cchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007544 374 MGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (599)
Q Consensus 374 ~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~ 453 (599)
++++.+|++++.++|.++.++...+...+++.+++++|++++|+++++.++..+...+..+++++..+.++|++|++|++
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHH
Q 007544 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (599)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~ 533 (599)
++++..+.++.+.++++++..+++. +.+++..+|..|+|+.+.+.+++++..++.++..+...+++.+++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877765 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc------cCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007544 534 SMMLVGAMSSTFLLYAPR------ATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (599)
Q Consensus 534 ~~~~~~l~~~~~~~~l~~------~~Gi~G~~~a~~~~~~~~~i~~~~~l~~ 579 (599)
.+++..+++++++++++. .+|+.|+++++.++..+..+...+++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888887665443 4899999999999987776655555533
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.83 E-value=2e-18 Score=185.18 Aligned_cols=204 Identities=10% Similarity=0.005 Sum_probs=188.7
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007544 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (599)
Q Consensus 376 ~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 454 (599)
+.+.|+++++++|.++.++...+...+|+.+++++ |++++|+.+++.++..+...+..+++.+..+.++|++|++|+++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45689999999999999999999999999999999 67789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHH
Q 007544 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (599)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~ 534 (599)
+++..+.++.++++++++..+....+.+++..++..|+|+.+.+.+|+++..++.++..+..++.+++++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007544 535 MMLVGAMSSTFLLYAPR--ATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (599)
Q Consensus 535 ~~~~~l~~~~~~~~l~~--~~Gi~G~~~a~~~~~~~~~i~~~~~l~~ 579 (599)
+++..+++++++++++. .+|+.|+|+|+.+++++.+++..+++++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877666543 6899999999999999888776666543
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.82 E-value=4.3e-18 Score=184.32 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=190.0
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007544 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (599)
Q Consensus 375 ~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 454 (599)
.++.+|+++++++|.++..++..+...+++.+++++|++++++++++.++..+...+..+++.+..|.+++++|++|+++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 34578999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHH
Q 007544 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (599)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~ 534 (599)
+++..+.++.++++++++.+++++.+++++..++..|+++.+.+..++.+.+++.++..+..++.+.+++.||++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc------ccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007544 535 MMLVGAMSSTFLLYAP------RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (599)
Q Consensus 535 ~~~~~l~~~~~~~~l~------~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~ 579 (599)
+.+..++++++++.++ +.+|+.|+++++.+++++..++..+++++
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888877766554 45899999999999999988877776643
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.81 E-value=5.9e-18 Score=182.73 Aligned_cols=205 Identities=13% Similarity=0.045 Sum_probs=190.0
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007544 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (599)
Q Consensus 376 ~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~~ 454 (599)
+..+|++++.+.|.+++++...+...+|+.+++++ |++++|+++++.++..+...+..+++.+..+.+++++|++|+|+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 34678999999999999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHH
Q 007544 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (599)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~ 534 (599)
+++..+.++.++++++++.++++..+++++..+|..|+++.+.+.+++++..++.++..+.....+++++.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007544 535 MMLVGAMSSTFLLYAPR--ATGLPGVWAGLTLFMGLRTVAGFVRLLSK 580 (599)
Q Consensus 535 ~~~~~l~~~~~~~~l~~--~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~ 580 (599)
++...++++++.++++. ++|+.|+|+++.+++.+..++..++++++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88888888777666553 69999999999999999988877766443
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.73 E-value=1.5e-15 Score=166.62 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=187.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhh
Q 007544 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (599)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (599)
+.+..|++++.+.|..++++...+...+|+.+.+++|+.++++++.+..+.++...++..++..+..+.+++.++++|
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~-- 295 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN-- 295 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 345689999999999999999999999999885559999999999999998887766666788899999999998887
Q ss_pred hhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCC--CccchHHHHHHHHHHHhhHH
Q 007544 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS--ASAMHGPAKKFLMLRALGSP 294 (599)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~a~~yl~~~~~~~~ 294 (599)
+++.++.+.+++.+...++++.+++++.+++++..++..++ +++....+..++++.+++.+
T Consensus 296 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~ 358 (502)
T TIGR01695 296 -----------------WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLI 358 (502)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999998876543 34467788999999999999
Q ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007544 295 AFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKV 367 (599)
Q Consensus 295 ~~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~ 367 (599)
+..+.......+++.||++.+++..++..++|++++++++. .+|+.|+++|+.+++.+..++..++++|+.
T Consensus 359 ~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 359 FYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred HHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999874 589999999999999999999988887764
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.71 E-value=2.9e-14 Score=142.77 Aligned_cols=269 Identities=17% Similarity=0.245 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhhccC
Q 007544 145 IVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLE 223 (599)
Q Consensus 145 ~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~ 223 (599)
+|.+.-..++++...+.+++-..++.| +|+++.|.++...++.+++..+...|+..+....+++...+
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~----------- 70 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK----------- 70 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----------
Confidence 567777889999999999999999999 99999999999999999999887888777776666554221
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Q 007544 224 GNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQ 303 (599)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~~ 303 (599)
+++.+.+....+...++.+++...+. .+...++.++. ...+........++........
T Consensus 71 ----------~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 129 (273)
T PF01943_consen 71 ----------KELRSAYFSSVLFLLLIFSLIFLLIL-----LIASFFGNPSL------SLILIILALLILILSSLSSVFS 129 (273)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCCchH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 13334444444444433333322222 22224443321 2223333333335788888999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHHHH
Q 007544 304 GIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYV 383 (599)
Q Consensus 304 ~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 383 (599)
.++++.++.+...+.+++..++.+++..+++.. ..++.+..++..++..+..++.+++.+|+.+..+...++...|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (273)
T PF01943_consen 130 GLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEIL 208 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHHHHH
Confidence 999999999999999999999888777777654 4458999999999999999999988887654334444577899999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 384 KSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASY 446 (599)
Q Consensus 384 ~~~~p~~~~~~~~~i~~~~~~~l~~~~-g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~ 446 (599)
+++.|.....+...+....+..+++.+ |++++|.|+++.++......+..++.++..|.+++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 209 RFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999886 899999999999999999999999999999999875
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.70 E-value=5.2e-15 Score=153.90 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007544 388 FLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGV 467 (599)
Q Consensus 388 p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~l~~~~ 467 (599)
|.++.++...+...+++.+++++|++++++++++.++..+...+..+++++..|.++++.|++|++++++..+..+.+.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 007544 468 LTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLL 547 (599)
Q Consensus 468 ~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~l~~~~~~~ 547 (599)
+++++.+++++++++++..+|..|++..+.+.+++++++++.++.++..++.+++++.||++..++...+..++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987888888999999999999999999999999999999999999988887776666554
Q ss_pred hccc---c-CChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007544 548 YAPR---A-TGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (599)
Q Consensus 548 ~l~~---~-~Gi~G~~~a~~~~~~~~~i~~~~~l~~ 579 (599)
.+.. + +|+.|+++++.++.++..++.++++++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433 3 669999999999999988877766643
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.68 E-value=3.1e-14 Score=153.11 Aligned_cols=211 Identities=20% Similarity=0.268 Sum_probs=191.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhh
Q 007544 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (599)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (599)
.++..|++++...|.+++.....+..++|+.+.+++++..+++++.+..+.++...++..++.++.-|..++...++|
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d-- 270 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD-- 270 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 345589999999999999999999999999999999999999999999999999988888888888888888777766
Q ss_pred hhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcC--CCCCccchHHHHHHHHHHHhhHH
Q 007544 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMG--VPSASAMHGPAKKFLMLRALGSP 294 (599)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~yl~~~~~~~~ 294 (599)
.++.++.+.+.+...+++.++.++.++.+++++.+++. +.-+.+-.+....++++.++++|
T Consensus 271 -----------------~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~ 333 (451)
T PF03023_consen 271 -----------------WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLP 333 (451)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhH
Confidence 78889999999999999999999999999999998663 33343456678899999999999
Q ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007544 295 AFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV 368 (599)
Q Consensus 295 ~~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~ 368 (599)
++.+...+...+.+++|+|.|++..+++.++|++++.+++ +.+|..|.++|+.++.++.+++++++++|+..
T Consensus 334 ~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 334 FYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998887 46899999999999999999999999988765
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.64 E-value=6.7e-13 Score=141.12 Aligned_cols=235 Identities=21% Similarity=0.225 Sum_probs=197.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (599)
++..|++.+...|++++..++.+..++|+.+-+.+.+...+.+..+..++++...++..++.++.-+-+++...++|
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~--- 304 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD--- 304 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC---
Confidence 36789999999999999999999999999999999999999999999999999999998888888888877766555
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCC--CCccchHHHHHHHHHHHhhHHH
Q 007544 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVP--SASAMHGPAKKFLMLRALGSPA 295 (599)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~a~~yl~~~~~~~~~ 295 (599)
.++.++..+.++.+++++.++.++.+..+++|+.+.+... -+++-.......+....+++++
T Consensus 305 ----------------~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 305 ----------------WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 6788899999999999999999999999999999866332 1222345567888999999999
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 007544 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMG 375 (599)
Q Consensus 296 ~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~~~~~~~ 375 (599)
+.+..++...+.+++|+|+|+++.+++.++|+++++.++ +.+|..|.|+++.++.++++.++++.++|+....+ ...
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~~ 445 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GRG 445 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cch
Confidence 999999999999999999999999999999999997776 46788889999999999999999999988775444 444
Q ss_pred hhhHHHHHHhhHHHHHHHHH
Q 007544 376 ALQFGDYVKSGGFLLGRTLA 395 (599)
Q Consensus 376 ~~~~~~~l~~~~p~~~~~~~ 395 (599)
+..+. ..|..+-..++...
T Consensus 446 ~~~~~-~~k~~l~~~i~~~~ 464 (518)
T COG0728 446 WGLFL-ILKLLLASAIMAAA 464 (518)
T ss_pred hhHHH-HHHHHHHHHHHHHH
Confidence 44444 45554444443333
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.62 E-value=3.5e-16 Score=144.38 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007544 388 FLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGV 467 (599)
Q Consensus 388 p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~l~~~~ 467 (599)
|..++++...+.+.+++.+++++|++++++++++.++.++..++..+++++..+.+++++|++|++++++..+.++.+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHHHHH
Q 007544 468 LTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVG-AMSSTFL 546 (599)
Q Consensus 468 ~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~-l~~~~~~ 546 (599)
+++++.++++..+++++..+|+.|+++.+.+.+++++..++.++.++.....++++|.||++.+++..++.. ++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877 6777665
Q ss_pred H
Q 007544 547 L 547 (599)
Q Consensus 547 ~ 547 (599)
+
T Consensus 161 y 161 (162)
T PF01554_consen 161 Y 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.61 E-value=2.3e-13 Score=148.66 Aligned_cols=204 Identities=18% Similarity=0.260 Sum_probs=171.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcch------hhhh----hhHHHHHHHHHHHhhhhhhhhHHHHH
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVE------LASA----GVSISIFNIVSKLFNIPLLSVATSFV 206 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~------laa~----~~a~~i~~~~~~~~~~gl~~~~~~~v 206 (599)
++..|++++.++|..++++...+...+|+.++++ +++.. .+.+ +++.++..+.. ....++..+..+.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999998 54322 1222 23334445443 33456778889999
Q ss_pred HHHHHhhhhhhhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHH
Q 007544 207 AEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFL 286 (599)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl 286 (599)
++.+++++ +++.++.+.+.+.+..+++++.++.+..+++++..++..+++ +..++
T Consensus 300 s~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~~~l 354 (488)
T TIGR02900 300 SEAMAKKN-------------------YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD------AGNFI 354 (488)
T ss_pred HHHHHcCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hHHHH
Confidence 99888776 778888999999999999999999999999999988864332 67889
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007544 287 MLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (599)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~ 366 (599)
+++++..++..+.....+++++.||++.+++.+++..++|++++++++..+.+|+.|+++++++++.+..++.++..+|.
T Consensus 355 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 355 RVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998865679999999999999999999998888764
Q ss_pred c
Q 007544 367 V 367 (599)
Q Consensus 367 ~ 367 (599)
.
T Consensus 435 ~ 435 (488)
T TIGR02900 435 I 435 (488)
T ss_pred h
Confidence 3
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.61 E-value=1.2e-15 Score=140.81 Aligned_cols=161 Identities=26% Similarity=0.391 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhhccCCCCCCC
Q 007544 150 PAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (599)
Q Consensus 150 p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (599)
|.++.+++..+...+|+.+++++|++++++++++..+.+.... +..|+..+..++++|++|++|
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~--------------- 64 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGD--------------- 64 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSS---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh-hcccccccccceeeccccccc---------------
Confidence 8899999999999999999999999999999999999999986 466899999999999999887
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 007544 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGF 309 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~ 309 (599)
+++.++.++.++.+.++++++.+++++++.+++..+++.+++ +.+.+..|+++..+..|+..+....++++++.
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (162)
T PF01554_consen 65 ----YKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIARQYLRIMAFSIPFFALFFVFSGILQGI 138 (162)
T ss_dssp ----TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCC
T ss_pred ----ccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHhhccchhhhhHHHHHHHHHHHHHHHHHC
Confidence 788899999999999999999999999999999999988777 89999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHH-HHHHHHHHH
Q 007544 310 KDTKTPVLCLGIGN-LLAVFLFPI 332 (599)
Q Consensus 310 ~~~~~~~~~~i~~~-vv~i~l~~l 332 (599)
||++.+++.+++.. ++|++++|+
T Consensus 139 g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 139 GRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp STHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999 999999875
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.58 E-value=5e-12 Score=138.35 Aligned_cols=202 Identities=16% Similarity=0.103 Sum_probs=167.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhh
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (599)
.+..|++++++.|.+.+++...+...+|+.++|+ +|++++|.|+.+..+.++...++...+.....|..++. ++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~--- 277 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QD--- 277 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cC---
Confidence 3567999999999999999999999999999999 89999999999999887765544433334444444432 11
Q ss_pred hhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHH
Q 007544 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (599)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~ 296 (599)
| +++.++.+.+.+.+...+++++++.+.+.++++..++.+++ +..+...++++++...+.
T Consensus 278 ~----------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~ 337 (492)
T PRK10459 278 D----------------TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLR 337 (492)
T ss_pred C----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHH
Confidence 1 56778888899999999999999999999999998775442 566889999999999999
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007544 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (599)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~ 366 (599)
.+.......+++.||++.+++.+++.+++++...+++. ..+|+.|+++++++++.+..++.++++.|+
T Consensus 338 ~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 338 SVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887766665 457999999999999999999888888554
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.50 E-value=4.2e-11 Score=118.56 Aligned_cols=246 Identities=16% Similarity=0.177 Sum_probs=179.6
Q ss_pred HHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhhccCCCCCCCCCchhhHHH
Q 007544 160 LAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQL 238 (599)
Q Consensus 160 l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (599)
..+++-..+++| +|+++.|.++....+..++..+...|+...... . .+++ +++.+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~-------------------~~~~~ 57 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARD-------------------KQDIR 57 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccC-------------------HHHHH
Confidence 356777888999 999999999999999999887766665433322 1 1111 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChhhHHH
Q 007544 239 SSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLC 318 (599)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 318 (599)
+.....+...++.+++..+ +...+..+++. ++ ...++....+..++..+....+..+++.+|.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (251)
T PF13440_consen 58 SLLRFSLLVSLLLAVILAI----LAILIAYFFGD-PE------LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALI 126 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHhCC-hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555555444444333322 22333334432 22 3345666778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHHHHHhhHHHHHHHHHHHH
Q 007544 319 LGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLI 398 (599)
Q Consensus 319 ~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~i 398 (599)
.++..++..++..++.+ .+.+..+..++..++..+..++.+...+++.+ .++ ....++.++.+.|.....+..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~ 201 (251)
T PF13440_consen 127 DIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKLR-LSF---KFSWRRLLKYGLPFSLSSLLSWL 201 (251)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccccC-CCc---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 99998888555444444 34488899999999999888777765443322 222 22333489999999999999999
Q ss_pred HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 007544 399 TMTLGTSMAAR-QGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIAS 445 (599)
Q Consensus 399 ~~~~~~~l~~~-~g~~~vaa~~i~~~i~~~~~-~~~~~l~~a~~~~is~ 445 (599)
....+..+++. +|++++|.|+++.++...+. ++..++++...|.+++
T Consensus 202 ~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 202 LSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998 79999999999999999888 8999999999999876
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.46 E-value=6.9e-12 Score=134.23 Aligned_cols=201 Identities=13% Similarity=-0.003 Sum_probs=168.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q 007544 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLT 215 (599)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~ 215 (599)
+++..|++++++.|..+.++..++...+|+.++++ +|++++|.|+.+..+.+.+..+...++..+..|.+++. ++
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~- 285 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE- 285 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-
Confidence 44568999999999999999999999999999985 99999999999999988664455668888999998874 22
Q ss_pred hhhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHH
Q 007544 216 KDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPA 295 (599)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~ 295 (599)
+++.++.+.+.+.....++++.+++++++++++..++..++ ++.+.++++++.++.++
T Consensus 286 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l 343 (416)
T PRK15099 286 ------------------KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVL 343 (416)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH
Confidence 45566677888888888888888888899999999887653 45578899998888888
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007544 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNK 365 (599)
Q Consensus 296 ~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~ 365 (599)
...+......+.+.++++......+...+++++++++++ +.+|..|+++++.+++.+..++......+
T Consensus 344 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 344 KVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776777888888899999999999999999988 45899999999999999999887766544
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.41 E-value=6.7e-11 Score=129.06 Aligned_cols=187 Identities=21% Similarity=0.235 Sum_probs=164.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhh
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (599)
.+..|++++.++|..++.+...+.+.+|+.++++ +|++++|.|+.+..+......+ ...+..+.-|.+++...+++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~-~~~l~~~l~P~~s~~~~~~~-- 285 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIV-ASALNRVLFPALSRAYAEGD-- 285 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHH-HHHHHHHHHHHHHHHHHcCc--
Confidence 4678999999999999999999999999999999 9999999999777776666654 44677888888888877665
Q ss_pred hhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHH
Q 007544 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (599)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~ 296 (599)
.++.++...+.+.+..+++++..+.+..+++|+...+.+++. ..+...++++++..++.
T Consensus 286 -----------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~~~~~ 344 (480)
T COG2244 286 -----------------RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALAGLFL 344 (480)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHHHHHH
Confidence 677778899999999999999999999999999987655542 33778899999999999
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 007544 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVS 351 (599)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is 351 (599)
.+.......+++.|+++..++...++.++|++++++++ +.+|..|+++++ .+
T Consensus 345 ~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 345 SLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 99999999999999999999999999999999999999 568999999999 44
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=9.7e-06 Score=83.01 Aligned_cols=415 Identities=13% Similarity=0.088 Sum_probs=230.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh
Q 007544 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (599)
Q Consensus 139 ~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (599)
+......+.+.-.+..+++.++..++-+.++-| ++++.+|..++-..+..-. .-+.++.-=+....
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT------------iLFlsREair~A~l- 71 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST------------ILFLSREAIRLAEL- 71 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH------------HHHhhHHHHHHHhc-
Confidence 455667777888889999999999998888888 8988887766544332222 22233321111100
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHH
Q 007544 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (599)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~ 297 (599)
.+.++++++..+..+ ..+++..++.+..+.+..+ .+.+....++......-..-..+...+...-.
T Consensus 72 -------~~gs~~~d~~te~~n----~~wlS~~L~~~i~~~~i~~---wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvEL 137 (530)
T KOG2864|consen 72 -------RIGSEPADTWTEFIN----LLWLSVPLQTAINVACIYF---WLGFLSSSDEISYSPLYAFAIFIIGLSIVVEL 137 (530)
T ss_pred -------cCCCCCCccHHHHHH----hhhhhhhHHHHHHHHHHHH---HHHHhhccchhhcCchHhHHHHHHHHHHHHHH
Confidence 011111112344333 3444444444433322222 11222111110001111112222233333333
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHH-HHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHH-HHHHHhhcc--ccC--
Q 007544 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLA-VFLFPILIYFC-QLGMPGAAISTVVSQYIVAVT-MIWFLNKKV--VLM-- 370 (599)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~i~~~vv~-i~l~~lli~~~-~~Gv~Gaa~at~is~~i~~~~-~~~~l~~~~--~~~-- 370 (599)
+...+.-..|..-+.+.-.+...+..++. ++...+++.+. .+++.--|+|.......-.+. .+.|++.++ +..
T Consensus 138 lsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~ 217 (530)
T KOG2864|consen 138 LSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEP 217 (530)
T ss_pred hcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccc
Confidence 33444444555555566666666666666 33333333333 344555566655544444442 223333332 000
Q ss_pred -------CCCcc----hhhH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHH-HHHHH
Q 007544 371 -------PPKMG----ALQF-GDYVKSGGFLLGRTLAVLITMTLGTSMAARQ---GSDAMAAHQICMQVWLAVS-LLTDA 434 (599)
Q Consensus 371 -------~~~~~----~~~~-~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~---g~~~vaa~~i~~~i~~~~~-~~~~~ 434 (599)
-|+.. ...+ ++..+.........+..++...-+..+++.. +-.+=|.|.+.+|.-++.. ++...
T Consensus 218 ~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~P 297 (530)
T KOG2864|consen 218 FSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRP 297 (530)
T ss_pred hhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhCh
Confidence 01110 0011 3456666666666666777766666555543 3455677888877765543 33455
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHH
Q 007544 435 LAASGQALIASYVSKGDFKTVREITN---FVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPI 511 (599)
Q Consensus 435 l~~a~~~~is~~~g~~~~~~~~~~~~---~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~ 511 (599)
+-.......++...+++.|+.|+... ..++....+++.....-...++.+..++.++.-........++++++..++
T Consensus 298 IEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~ 377 (530)
T KOG2864|consen 298 IEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPF 377 (530)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHH
Confidence 77777777788777777776666544 444555544444444444455566666655432223355789999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHH---HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007544 512 NALAFIFDGLHYGVSDFRYAAC---SMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSK 580 (599)
Q Consensus 512 ~~~~~i~~~~l~g~g~~~~~~~---~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~ 580 (599)
.+++.+.++.+.+.++.+.... .+++..++.....+++...+|..|..+|..+.+.++-.....++++.
T Consensus 378 lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 378 LAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887653 44445555566677777889999999999999999888776666543
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.89 E-value=9e-08 Score=102.78 Aligned_cols=202 Identities=11% Similarity=0.029 Sum_probs=180.1
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007544 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLA-VSLLTDALAASGQALIASYVSKGDFKT 454 (599)
Q Consensus 376 ~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~-~~~~~~~l~~a~~~~is~~~g~~~~~~ 454 (599)
+.+.|++.+++.|..+..+.......+.+.+++++|+.++|+.++++...+. -+.+..++..+..+..+|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 4567899999999999999999999999999999999999999999888765 556678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHH
Q 007544 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (599)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~ 534 (599)
......++..+....++|.+... .+.+++...+..|+++...+..+..++.+..+.+.....+...+++.+++....++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999898877554 45599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--cccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 535 MMLVGAMSSTFLLYA--PRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (599)
Q Consensus 535 ~~~~~l~~~~~~~~l--~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~ 578 (599)
.....+..+++.+.+ ..++|..|+.++..+++.+......++.+
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~ 228 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAV 228 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhe
Confidence 888888766655544 46789999999999999998887777753
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.83 E-value=3.8e-06 Score=91.62 Aligned_cols=286 Identities=12% Similarity=0.012 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhc-CCCh-----hH-HHHHHHHHHHHHHHHHHHHH---hh
Q 007544 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC-QLGM-----PG-AAISTVVSQYIVAVTMIWFL---NK 365 (599)
Q Consensus 296 ~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~-~~Gv-----~G-aa~at~is~~i~~~~~~~~l---~~ 365 (599)
-.++...|..+.-..+.+....+..+..+++..+..+..... +++. .+ +.++..++++...+...... ..
T Consensus 149 EP~~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~ 228 (549)
T PF04506_consen 149 EPLYILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYF 228 (549)
T ss_pred hHHHHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhcc
Confidence 334455677777777777777777777777766555543211 1111 11 23444455544443222111 11
Q ss_pred cc----ccCCCCcch-----h-hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--c-CchHHHHHHHHHHHHHHHHH-H
Q 007544 366 KV----VLMPPKMGA-----L-QFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR--Q-GSDAMAAHQICMQVWLAVSL-L 431 (599)
Q Consensus 366 ~~----~~~~~~~~~-----~-~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~--~-g~~~vaa~~i~~~i~~~~~~-~ 431 (599)
.. ....++... . --++.++.....+...+...+..+-+..+++. + +.++-|.|++++|+-+++.= +
T Consensus 229 ~~~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~l 308 (549)
T PF04506_consen 229 FPFKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLL 308 (549)
T ss_pred CcccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHH
Confidence 11 011122211 1 12678888889999999999999999988877 4 67888999999999776533 2
Q ss_pred HHHHHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHH
Q 007544 432 TDALAASGQALIASYVSKGDF---------KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGV 502 (599)
Q Consensus 432 ~~~l~~a~~~~is~~~g~~~~---------~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l 502 (599)
...+-.+.....++.+.+++. ++..+.+...+++...+++.+...-...++.+.+++.++.-........+
T Consensus 309 F~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l 388 (549)
T PF04506_consen 309 FQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLL 388 (549)
T ss_pred hCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHH
Confidence 344666666666666554322 45666777777777777777666666777777777755433233457889
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCChHHHHH---HHHHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 503 LFVSASQPINALAFIFDGLHYGVSDFRYAAC---SMMLVGAMSSTFLLYAPR-ATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (599)
Q Consensus 503 ~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~---~~~~~~l~~~~~~~~l~~-~~Gi~G~~~a~~~~~~~~~i~~~~~l~ 578 (599)
++++...++.+++.+.+..+++..+.+.... .+.+..++.....+.+.. .+|..|+.+|..+.+.++.+..+++++
T Consensus 389 ~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~ 468 (549)
T PF04506_consen 389 RAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIR 468 (549)
T ss_pred HHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887643 233334444444455555 599999999999999999998888876
Q ss_pred hhC
Q 007544 579 SKS 581 (599)
Q Consensus 579 ~~~ 581 (599)
+..
T Consensus 469 ~~~ 471 (549)
T PF04506_consen 469 RYF 471 (549)
T ss_pred HHH
Confidence 543
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.67 E-value=4.9e-05 Score=74.83 Aligned_cols=258 Identities=14% Similarity=0.084 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc--h-hhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhh
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSV--E-LASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNL 214 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~--~-laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~ 214 (599)
...++.+.++-+|..++.++.-+.-.+-+..++|-.++ + +|+|+++..+.-.+..... .+-.+... +++.+
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~-~~~~igl~-----~V~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLS-MFHHIGLV-----FVNSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhh-hhHHHHHH-----Hhcch
Confidence 34588999999999999999999888888888873222 3 8999999988766653222 12222222 33222
Q ss_pred hhhhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHchHHHH-HhcCCCCCccchHHHHHHHHHHHhh
Q 007544 215 TKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAAL-SLASGPFL-NLMGVPSASAMHGPAKKFLMLRALG 292 (599)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~i~-~~~~~~~~~~~~~~a~~yl~~~~~~ 292 (599)
+++ ++.+........+...+..++. -.+...++ ..++.+++ +.+.+...+.++.+.
T Consensus 81 -------------------rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~--va~~tr~a~l~L~ll 138 (345)
T PF07260_consen 81 -------------------RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPS--VAEKTRRAFLYLTLL 138 (345)
T ss_pred -------------------hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHH--HHHHHHHHHHHHHHH
Confidence 111 1111111111222211111112 22233333 46677776 888899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhc-C------CChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007544 293 SPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC-Q------LGMPGAAISTVVSQYIVAVTMIWFLNK 365 (599)
Q Consensus 293 ~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~-~------~Gv~Gaa~at~is~~i~~~~~~~~l~~ 365 (599)
-++..+....++++-=.+++......++...+.-+++..+++... + .++.|.-.+..+=..+.++.+++.++.
T Consensus 139 Pfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~ 218 (345)
T PF07260_consen 139 PFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHD 218 (345)
T ss_pred HHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999998777777777777766666666555555321 1 122222222111111122233333333
Q ss_pred ccccCCC--CcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-cC-----chHHHHHHHHHH
Q 007544 366 KVVLMPP--KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR-QG-----SDAMAAHQICMQ 423 (599)
Q Consensus 366 ~~~~~~~--~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~-~g-----~~~vaa~~i~~~ 423 (599)
+.+.... +.+...+++++++.+|++.......+.-.+.+.++++ +| ++++|...+.+.
T Consensus 219 ~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~yp 284 (345)
T PF07260_consen 219 IIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYP 284 (345)
T ss_pred hccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccC
Confidence 3332221 3344578999999999999999999999999999999 43 355555444333
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.58 E-value=4.9e-06 Score=74.98 Aligned_cols=81 Identities=31% Similarity=0.467 Sum_probs=75.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007544 286 LMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNK 365 (599)
Q Consensus 286 l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~ 365 (599)
+++++++.++..+....+..+++.||++.+++..+++.++|++++++++ +++|..|+++|+.+++.+..++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999997 57999999999999999999999999888
Q ss_pred ccc
Q 007544 366 KVV 368 (599)
Q Consensus 366 ~~~ 368 (599)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 753
No 39
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.12 E-value=0.00081 Score=66.85 Aligned_cols=186 Identities=18% Similarity=0.229 Sum_probs=114.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 007544 383 VKSGGFLLGRTLAVLITMTLGTSMAAR-QGSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVREITN 460 (599)
Q Consensus 383 l~~~~p~~~~~~~~~i~~~~~~~l~~~-~g~~~vaa~~i~~~i~~~~~~~-~~~l~~a~~~~is~~~g~~~~~~~~~~~~ 460 (599)
+|-..+.........+...+...++.+ +|+++.+.|+....+..+...+ ..|+.++..-.+++...+ .+..++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455566677777777666666666555 6999999999999999888877 577888887777766533 233333443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007544 461 FVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGA 540 (599)
Q Consensus 461 ~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~l 540 (599)
.......+.++...+...... .+.. ++... .+..+.....++..........+++.++.+..........+
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGN-PSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCC-chHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322222222212 3333 32211 11222222225677888899999999999988877776655
Q ss_pred HHHHHHHhcc-ccCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 007544 541 MSSTFLLYAP-RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (599)
Q Consensus 541 ~~~~~~~~l~-~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~ 579 (599)
......+.+. ...++.+...+..++.++..++..+..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443222222 23448889999999998887777777653
No 40
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.02 E-value=0.0008 Score=73.67 Aligned_cols=217 Identities=12% Similarity=0.111 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--c-CcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhh
Q 007544 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR--L-GSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (599)
Q Consensus 140 ~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~--l-g~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (599)
..+++++++.......+.-.+++=-|++++.. + ..++.|.|++++.+-.++.-++-.++--..-...++...+++++
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 35889999999999999999999999999998 5 45679999999999888876666666666666677766554322
Q ss_pred hhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHH
Q 007544 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (599)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~ 296 (599)
+.. + .+..++..+.+...+.+...+|+++..+....++.++.+++++.= ....+...+++.+..+|+.
T Consensus 331 ~~~---------~-~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~~l 398 (549)
T PF04506_consen 331 KKQ---------P-QESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIPFL 398 (549)
T ss_pred hhc---------c-chhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHHHH
Confidence 210 0 112577788889999999999999888888888899988765432 1233577888889999999
Q ss_pred HHHHHHHHHHhhcCCChhhH---HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007544 297 VVSLALQGIFRGFKDTKTPV---LCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL 369 (599)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~---~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~ 369 (599)
+++.+.-++.++..+.+... ...++..++.+..+++|+.. ++|..|..+|+++...+-.+..++++++....
T Consensus 399 a~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~ 473 (549)
T PF04506_consen 399 AINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFRN 473 (549)
T ss_pred HHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999887765544 34445556667788888865 79999999999999999999999998775543
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.92 E-value=0.0026 Score=62.57 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=105.5
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007544 404 TSMAARQGSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFG 482 (599)
Q Consensus 404 ~~l~~~~g~~~vaa~~i~~~i~~~~~~~-~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~ 482 (599)
..+...+|+++.+.|+....+..+...+ ..|+.+...- ..+++.++.++.....+....+..+...++......
T Consensus 9 ~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF13440_consen 9 ILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY 83 (251)
T ss_pred HHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557999999999999998888776 3555544433 234667777777777766655555444443322222
Q ss_pred hhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HHHHhccccCChHHHHHH
Q 007544 483 SLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSS-TFLLYAPRATGLPGVWAG 561 (599)
Q Consensus 483 ~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~l~~~-~~~~~l~~~~Gi~G~~~a 561 (599)
.+ .+++ ...++.++++..++..+.....+.+++.+|.+..........+... ..........+..+..++
T Consensus 84 ----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T PF13440_consen 84 ----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSILLA 154 (251)
T ss_pred ----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33 3332 2344566677778888899999999999999998887776655442 122222223478888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007544 562 LTLFMGLRTVAGFVRLL 578 (599)
Q Consensus 562 ~~~~~~~~~i~~~~~l~ 578 (599)
..++.++..+..+...+
T Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 155 FIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888877776666543
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.92 E-value=5.6e-05 Score=68.02 Aligned_cols=80 Identities=5% Similarity=-0.007 Sum_probs=74.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007544 502 VLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (599)
Q Consensus 502 l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l~~~~ 581 (599)
+++++++.++.++......++++.||+|..+..+.+..+++.++++.+.+.+|..|+++++.+++.+...+..+..+++.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~ 81 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999998888886644
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.0097 Score=61.60 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh
Q 007544 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR---LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (599)
Q Consensus 141 ~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~---lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (599)
.++..+...-..-..+.-.+..==|.+++.- +.-.+.|.|.+.+.+-.++.-++--++--..-.+.+|...+++++|
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 4666777777777777888888888888873 4445667777776666666554444555555667777766665444
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHH
Q 007544 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (599)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~ 297 (599)
.++...+....+.+...+|+.+..+....+++.+.++|++.= ....+...+++.++.+|+.+
T Consensus 318 ----------------~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~lL~~YclYI~~lA 379 (530)
T KOG2864|consen 318 ----------------VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSLLLSWYCLYIPFLA 379 (530)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchHHHHHHHHHHHHHH
Confidence 688889999999999999988888888888999998887643 22345678999999999999
Q ss_pred HHHHHHHHHhhcCCChhh---HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 007544 298 VSLALQGIFRGFKDTKTP---VLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMP 371 (599)
Q Consensus 298 l~~~~~~~l~~~~~~~~~---~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~~~ 371 (599)
++.+.-+++.+..+..-. -+..++..++.++++++++-. +|..|..+|.++...+-.+..+.++++..+...
T Consensus 380 iNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~ 454 (530)
T KOG2864|consen 380 INGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRDLS 454 (530)
T ss_pred hccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999887654432 334455677788899999976 556999999999988888888888877665443
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.53 E-value=0.13 Score=52.13 Aligned_cols=370 Identities=11% Similarity=0.039 Sum_probs=194.3
Q ss_pred HHHHHHHHHHhhhcc-Ccch-----hhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhhccCCCCCCCCC
Q 007544 158 DPLAQLMETAYVGRL-GSVE-----LASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNG 231 (599)
Q Consensus 158 ~~l~~lvd~~~ig~l-g~~~-----laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~ 231 (599)
-++...+...+++.+ .+.+ .-.+-........++.+++.|+....|.+++...=+++
T Consensus 34 Pwll~i~~i~~i~iis~~~~v~~~~~~~Flssv~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~----------------- 96 (467)
T COG4267 34 PWLLSIVSIILIGIISSQIVVPRVLSPQFLSSVTYCFIFSQIITGGFQLIITRFISDCLFEKK----------------- 96 (467)
T ss_pred chHHHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----------------
Confidence 344455555555552 2111 12233333445556667777888888888877654433
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC
Q 007544 232 TTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKD 311 (599)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~~~ 311 (599)
.++....+.-...+....+..++.+.+ .. +++ . ...|=.........+...=....++.+.+|
T Consensus 97 --~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~--~~~---~--si~yk~l~~~~FV~m~~~Wi~~iFlS~lK~ 159 (467)
T COG4267 97 --QRKILPSYIGVILLVTLVAGVIGLIVF--------FV--NNQ---Y--SIVYKILACALFVGMSLVWILMIFLSGLKK 159 (467)
T ss_pred --HHHHhHhHHHHHHHHHHHHHHHHHHhh--------hh--cCc---h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333333333333333232111 11 111 0 112222223334445555566778899999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc-CCCCcchhhHHHHHHhhHHHH
Q 007544 312 TKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL-MPPKMGALQFGDYVKSGGFLL 390 (599)
Q Consensus 312 ~~~~~~~~i~~~vv~i~l~~lli~~~~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~p~~ 390 (599)
.+...+.-.++.++.+++..++- ++++.|.-++..++..+...+...++.|..+. .+..++....+ +--...+
T Consensus 160 y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL~~~---~~y~SLl 233 (467)
T COG4267 160 YKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRRIGFDFLLYR---RKYPSLL 233 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccceehhhhh---hcchHHH
Confidence 99999999999999998888776 46899999999999999998888887664432 22223322221 1111223
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCchHHH------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH----hcC----
Q 007544 391 GRTLAVLITMTLGTSMAAR--QGSDAMA------AHQICMQVWLAVSLLTD-----ALAASGQALIASY----VSK---- 449 (599)
Q Consensus 391 ~~~~~~~i~~~~~~~l~~~--~g~~~va------a~~i~~~i~~~~~~~~~-----~l~~a~~~~is~~----~g~---- 449 (599)
+--....+..++++.+.=. .|.+..+ -|.+..-...+...+.. .+-+..++.--+. -+.
T Consensus 234 lIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~ 313 (467)
T COG4267 234 LIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLR 313 (467)
T ss_pred HHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeeeeehHHHHHHHHHHHHhCCCCHH
Confidence 3334445555566554311 1211111 12222222222222211 1111222211111 111
Q ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 007544 450 ---GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (599)
Q Consensus 450 ---~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g 526 (599)
++.++.....++.+.-.+-+-...++..+++++.+...|.-++ ...+...+-.++..+....+.+-.+..-..
T Consensus 314 ~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd 389 (467)
T COG4267 314 EIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFD 389 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234445555666666666666777888888998888776433 344455555556555555555666666666
Q ss_pred ChHHHHHHHHHHHHHHHHHHHh---ccccCChHHHHHHHHHHHHHHHH
Q 007544 527 DFRYAACSMMLVGAMSSTFLLY---APRATGLPGVWAGLTLFMGLRTV 571 (599)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~~~~~---l~~~~Gi~G~~~a~~~~~~~~~i 571 (599)
+-+..+..+....+.+..+.++ +.+.+--+|...|..+...+...
T Consensus 390 ~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~~ 437 (467)
T COG4267 390 YRRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAFK 437 (467)
T ss_pred hhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHHh
Confidence 6666666555544444444333 34555566677766666554443
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.10 E-value=0.18 Score=50.27 Aligned_cols=155 Identities=13% Similarity=0.082 Sum_probs=104.2
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 007544 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQG---SDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (599)
Q Consensus 376 ~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g---~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~~ 452 (599)
..++++++++-.|+.+++.+..+.-.+.+.-+++-. .+.+|+|+++..+.-++..+...+-+....+ ++++.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH-----hcchh
Confidence 346788999999999999999999999888887743 3558999999999888887777776655554 33332
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh-hhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHH
Q 007544 453 KTVREITNFVLKIGVLTGVS-LATILGLSFG-SLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRY 530 (599)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~-~~i~l~~~~~-~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~ 530 (599)
++ ++.+......+.+..+. ..+..--+.. .+..++.-++++.+.+...+.++.+.-+++++....+|++.=.+++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 22222222222221111 1122222223 234556778999999999999999999999999999999884444444
Q ss_pred HHHHHH
Q 007544 531 AACSMM 536 (599)
Q Consensus 531 ~~~~~~ 536 (599)
.....+
T Consensus 161 V~~aSI 166 (345)
T PF07260_consen 161 VGSASI 166 (345)
T ss_pred eehHHH
Confidence 434333
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=89.97 E-value=26 Score=36.22 Aligned_cols=143 Identities=12% Similarity=0.057 Sum_probs=91.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHH
Q 007544 421 CMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVG 499 (599)
Q Consensus 421 ~~~i~~~~~~~-~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~ 499 (599)
......+++++ +.+++....-.+|+.+=+++.+++.....-.+.+....+..++.+++ +.+++ .....
T Consensus 65 sv~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~y 133 (467)
T COG4267 65 SVTYCFIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVY 133 (467)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHH
Confidence 33334444444 45577777777888877788888777776666665555544442111 11222 11222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 007544 500 TGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (599)
Q Consensus 500 ~~l~i~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l 577 (599)
-...+...+..+...+....+.+++|.+....+..+..++...+..++ .++++.|..++..++..+.......++
T Consensus 134 --k~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~-~~~~ie~lLL~~~IGi~~i~~l~~~~I 208 (467)
T COG4267 134 --KILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLF-LKSPIEGLLLTLDIGIFIILFLLNFYI 208 (467)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 233455566777788888999999999998888777766665544333 567999999999999877666444433
No 47
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=51.06 E-value=2e+02 Score=27.21 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 007544 559 WAGLTLF 565 (599)
Q Consensus 559 ~~a~~~~ 565 (599)
|....++
T Consensus 181 ~~~iiig 187 (206)
T PF06570_consen 181 WVYIIIG 187 (206)
T ss_pred HHHHHHH
Confidence 3333333
No 48
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=48.38 E-value=3.5e+02 Score=28.45 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 007544 450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLF 488 (599)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf 488 (599)
.+.++.+++.+++.+.+++......+++....-|+...-
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999888888888777633
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=38.69 E-value=1.6e+02 Score=23.31 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 007544 436 AASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVS 472 (599)
Q Consensus 436 ~~a~~~~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 472 (599)
+......+-+.+.+||++++++..+++.+++.+-.+.
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3334445677888999999999999998887654433
No 50
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=31.39 E-value=3.7e+02 Score=23.77 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=10.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHH
Q 007544 378 QFGDYVKSGGFLLGRTLAVLI 398 (599)
Q Consensus 378 ~~~~~l~~~~p~~~~~~~~~i 398 (599)
+.++-+|.+.-.+...+...+
T Consensus 102 ~~~~A~~~~~ga~~g~~~g~~ 122 (140)
T PF04306_consen 102 DFRRALRAGIGALVGFLAGTL 122 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 455556655555554444433
No 51
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=29.07 E-value=9.6e+02 Score=27.84 Aligned_cols=7 Identities=0% Similarity=-0.012 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 007544 300 LALQGIF 306 (599)
Q Consensus 300 ~~~~~~l 306 (599)
..+..++
T Consensus 278 ~~isE~~ 284 (742)
T TIGR01299 278 SYFAEFL 284 (742)
T ss_pred HHHHHHC
Confidence 3333333
No 52
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=28.47 E-value=8.3e+02 Score=26.92 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc--chhhhhhhHHHHHHHHHH
Q 007544 149 LPAIAGQVIDPLAQLMETAYVGRLGS--VELASAGVSISIFNIVSK 192 (599)
Q Consensus 149 ~p~~~~~~~~~l~~lvd~~~ig~lg~--~~laa~~~a~~i~~~~~~ 192 (599)
.-..++++.+.+..+.-.+++-.+.. ..++.+..+..++.++..
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Lls 62 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLS 62 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777766666666422 235555666666655543
No 53
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=28.20 E-value=7.5e+02 Score=26.31 Aligned_cols=82 Identities=12% Similarity=-0.006 Sum_probs=41.9
Q ss_pred CCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007544 372 PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGD 451 (599)
Q Consensus 372 ~~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g~~~ 451 (599)
++.+.++.++.++.++|.++.-+. .+...+.+...+.+.+++++..-+.- ++. + ..+-+
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~p~i-----il~~i~~g~~t~teaa~~~~~~~l~i-------~~~------~---~~~~~ 260 (416)
T PF06808_consen 202 PRASLKERWRAFKRAIPALLIPVI-----ILGGIYLGIFTPTEAAAVAVVYALVI-------GLF------V---YRRLS 260 (416)
T ss_pred ccchHHHHHHHHHhcchHHHHHHH-----HHHHhhhcccchhhhhhhhHHHHHHH-------HHh------h---hcccC
Confidence 344455666666766665543321 11223334455666666655443321 110 0 44556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 007544 452 FKTVREITNFVLKIGVLTGVSLA 474 (599)
Q Consensus 452 ~~~~~~~~~~~l~~~~~~~~~~~ 474 (599)
.++..+....+.+.+..+...++
T Consensus 261 ~~~l~~~l~~~~~~~~~i~~iia 283 (416)
T PF06808_consen 261 WKDLWRALVETARTTGMILFIIA 283 (416)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 66777777777776665544433
No 54
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=27.07 E-value=7.5e+02 Score=25.94 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Q 007544 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLN 268 (599)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 268 (599)
+++.+++++.+...+.+...+..++.....-|+..
T Consensus 90 e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 90 ESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998888888888888776
No 55
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=26.29 E-value=3.9e+02 Score=27.93 Aligned_cols=42 Identities=17% Similarity=0.058 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCC
Q 007544 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSA 275 (599)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 275 (599)
+++.....+..+.+...+..++..++-.+..-+++++|.+.+
T Consensus 117 perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~ 158 (423)
T COG4536 117 PERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLD 158 (423)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 566555566666666667777777777788888899988765
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=25.79 E-value=6.9e+02 Score=27.57 Aligned_cols=34 Identities=3% Similarity=0.105 Sum_probs=21.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Q 007544 231 GTTERKQLSSVSTALLLAVGIGIFEAAALSLASG 264 (599)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (599)
.+..+.+.+-...+..++.+++....+.+....+
T Consensus 279 ~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~ 312 (550)
T KOG1289|consen 279 KNASKAAPRGIISSIAIGFILGWIIIIGIAYTIP 312 (550)
T ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555566666666777777766666665555
No 57
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.03 E-value=1.4e+02 Score=25.74 Aligned_cols=27 Identities=7% Similarity=-0.182 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007544 555 LPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (599)
Q Consensus 555 i~G~~~a~~~~~~~~~i~~~~~l~~~~ 581 (599)
+.|+.+|.+++.+...++.++++|+++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666665444444444444433
No 58
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=22.69 E-value=5.8e+02 Score=23.09 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 007544 439 GQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKD 491 (599)
Q Consensus 439 ~~~~is~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d 491 (599)
..-.+.+.++.++.++.-......++....+..|+..++..+.+.+.+.+..+
T Consensus 102 f~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~ 154 (183)
T PF01595_consen 102 FGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIE 154 (183)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33456788888999999999999999999999999999999999999888654
No 59
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=22.19 E-value=7.3e+02 Score=24.10 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 007544 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLA 219 (599)
Q Consensus 141 ~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~-lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~ 219 (599)
.+.+-+...|..++.++..+.+++....+++ +|-++.-..++.- -..|+-++-..+++-
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~p---------------KSVTtPIAm~is~~i----- 145 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLP---------------QAATTAIALPVSAGI----- 145 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh---------------HhhhHHHHHHHHHHh-----
Confidence 5667788899999999999999999999999 8876533222211 122333333333221
Q ss_pred hccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHH
Q 007544 220 AGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVS 299 (599)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~ 299 (599)
.... -+...+.++..++...+.++++++++.+++ ..+-..++.-...+.
T Consensus 146 ---------------GG~p-------sLtA~~ViitGi~Gai~g~~llk~~~I~~~---------~a~GlalG~asHaiG 194 (232)
T PRK04288 146 ---------------GGIK-------EITSFAVIFNAVIIYALGAKFLKLFRIKNP---------IAKGLALGTSGHALG 194 (232)
T ss_pred ---------------CCcH-------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHHHHhHHHHHHH
Confidence 1101 122233444455667789999999987753 455566666555543
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 007544 300 LALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILI 334 (599)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli 334 (599)
. .+++-.++.+-........++.++..++.+++.
T Consensus 195 T-arA~e~~~~~Ga~sslam~l~gi~tail~P~l~ 228 (232)
T PRK04288 195 V-AVGIEMGEVEAAMASIAVVVVGVVTVAVVPVFV 228 (232)
T ss_pred H-HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223333333334444444445555555555544
No 60
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=21.84 E-value=8.9e+02 Score=24.95 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChhhHH
Q 007544 238 LSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVL 317 (599)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 317 (599)
.+.+.+.+..-..++...++.+-..-|.+...+|..+ +.....+....+...+....+.--+...-+..+|.|.-..
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~---~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~l 85 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLE---FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLIL 85 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccce---eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHH
Confidence 3444444444444444444444444555556665433 3333444444555555555666667778888888776655
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007544 318 CLGIGNLLAVFLFPILIY 335 (599)
Q Consensus 318 ~~i~~~vv~i~l~~lli~ 335 (599)
....+-++.-++.+.+..
T Consensus 86 sL~~Nwii~P~lm~~la~ 103 (342)
T COG0798 86 SLFVNWIIGPLLMFALAW 103 (342)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555444443
No 61
>PTZ00370 STEVOR; Provisional
Probab=20.17 E-value=99 Score=30.73 Aligned_cols=20 Identities=5% Similarity=0.111 Sum_probs=11.6
Q ss_pred HHHH-HHHHhhCCCccccccc
Q 007544 571 VAGF-VRLLSKSGPWWFLHTD 590 (599)
Q Consensus 571 i~~~-~~l~~~~~~w~~~~~~ 590 (599)
++++ |..|+|+..|++..++
T Consensus 272 iilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 272 IILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHHHhhcchhHHHHHh
Confidence 4444 4444566788876554
Done!