Query 007544
Match_columns 599
No_of_seqs 291 out of 1646
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 04:25:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.1E-44 3.7E-49 390.6 37.0 418 138-578 8-444 (460)
2 3mkt_A Multi antimicrobial ext 99.8 2.8E-17 9.7E-22 176.3 20.7 210 137-368 233-448 (460)
3 1pw4_A Glycerol-3-phosphate tr 84.1 38 0.0013 34.2 28.7 24 551-574 408-431 (451)
4 2k1k_A Ephrin type-A receptor 33.0 54 0.0019 20.9 3.7 25 341-365 13-37 (38)
5 3o7q_A L-fucose-proton symport 23.4 5.2E+02 0.018 25.2 28.1 33 141-173 25-57 (438)
6 4hkr_A Calcium release-activat 21.7 4.4E+02 0.015 23.7 15.4 79 411-490 56-142 (214)
7 2ks1_B Epidermal growth factor 17.9 2.1E+02 0.0072 18.8 4.4 27 341-367 13-39 (44)
8 2jwa_A Receptor tyrosine-prote 17.9 1.9E+02 0.0066 19.0 4.2 13 355-367 27-39 (44)
9 4aps_A DI-OR tripeptide H+ sym 16.0 8E+02 0.027 24.3 25.5 21 551-571 446-466 (491)
10 1m56_D Cytochrome C oxidase; m 15.5 75 0.0026 21.8 1.8 13 235-247 19-31 (51)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.1e-44 Score=390.64 Aligned_cols=418 Identities=19% Similarity=0.227 Sum_probs=381.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhh
Q 007544 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (599)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (599)
++..|++++.++|+++++++..+++++|+.+++|+|++++++++++.++...... +..|+..+..+.+++++++++
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~-~~~g~~~~~~~~is~~~g~~~--- 83 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSIL-FGVGLLMALVPVVAQLNGAGR--- 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHH-HHHHHHHHHGGGCTTTTSSSS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCC---
Confidence 3558999999999999999999999999999999999999999999999776664 456888889999999888776
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHHH
Q 007544 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (599)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~~ 297 (599)
+++.++.+++++.+.++++++.+++ +++.++++.+++.+++ ..+.+..|++++.++.++..
T Consensus 84 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~ 144 (460)
T 3mkt_A 84 ----------------QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAVPAYL 144 (460)
T ss_dssp ----------------TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHHHHHH
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999987765 7788999988877655 78889999999999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHh-c---CCChhHHHHHHHHHHHHHHHHHHHHHhhccccCC--
Q 007544 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-C---QLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMP-- 371 (599)
Q Consensus 298 l~~~~~~~l~~~~~~~~~~~~~i~~~vv~i~l~~lli~~-~---~~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~~~~-- 371 (599)
+...+++++|+.||++.+++.+++++++|+++++++++. + ++|+.|+++|+++++++..++.+++++++.+..+
T Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 224 (460)
T 3mkt_A 145 LFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVK 224 (460)
T ss_dssp HHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhh
Confidence 999999999999999999999999999999999999975 3 7999999999999999999999888876543221
Q ss_pred -----CCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 372 -----PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASY 446 (599)
Q Consensus 372 -----~~~~~~~~~~~l~~~~p~~~~~~~~~i~~~~~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~ 446 (599)
.+.++..+|++++++.|.++..+...+.+.+++.+++++|++++|+|+++.++.++..++..+++++..|.++++
T Consensus 225 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~ 304 (460)
T 3mkt_A 225 VFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHK 304 (460)
T ss_dssp CSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244566889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 007544 447 VSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (599)
Q Consensus 447 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~g~g 526 (599)
+|++|.+++++..++++++.++++++.++++.++++++..+|++|+++.+.+..++++++++.++++++.+..+++++.|
T Consensus 305 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 384 (460)
T 3mkt_A 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYK 384 (460)
T ss_dssp HHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHH-HHHHHHHHhcccc-------CChHHHHHHHHHHHHHHHHHHHHHHH
Q 007544 527 DFRYAACSMMLVG-AMSSTFLLYAPRA-------TGLPGVWAGLTLFMGLRTVAGFVRLL 578 (599)
Q Consensus 527 ~~~~~~~~~~~~~-l~~~~~~~~l~~~-------~Gi~G~~~a~~~~~~~~~i~~~~~l~ 578 (599)
|+|.+++.+.+.. ++.+++.+++.+. +|+.|+|+++.+++++.+++..++++
T Consensus 385 ~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~ 444 (460)
T 3mkt_A 385 DMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY 444 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876 7777777777666 99999999999999998887776653
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.75 E-value=2.8e-17 Score=176.28 Aligned_cols=210 Identities=17% Similarity=0.123 Sum_probs=191.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhh
Q 007544 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (599)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (599)
+.+..|++++.++|.++.++...+...+|+.+++++|++++++++++..+.++... +..++..+..+.+++.+|+++
T Consensus 233 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~-~~~~~~~a~~p~i~~~~g~~~-- 309 (460)
T 3mkt_A 233 QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFM-FPMSIGAAVSIRVGHKLGEQD-- 309 (460)
T ss_dssp TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSC--
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCC--
Confidence 34567899999999999999999999999999999999999999999999999885 455899999999999999887
Q ss_pred hhhhccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHhcCCCCCccchHHHHHHHHHHHhhHHHH
Q 007544 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (599)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~yl~~~~~~~~~~ 296 (599)
+++.++...+++.+..+++++.+++++++++++..++..+++ ..+.+..++++..++.++.
T Consensus 310 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~~l~~~~~~~~~~ 370 (460)
T 3mkt_A 310 -----------------TKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQV--VVALAMQLLLFAAIYQCMD 370 (460)
T ss_dssp -----------------CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCST--THHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999999998876554 7889999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHH-HHHHHHHHHHHHh----cC-CChhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007544 297 VVSLALQGIFRGFKDTKTPVLCLGIGN-LLAVFLFPILIYF----CQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV 368 (599)
Q Consensus 297 ~l~~~~~~~l~~~~~~~~~~~~~i~~~-vv~i~l~~lli~~----~~-~Gv~Gaa~at~is~~i~~~~~~~~l~~~~~ 368 (599)
.+.....+++++.||++.+++..++.. ++++.++++++.. ++ +|+.|+++|+.+++.+..++..+.++|+.+
T Consensus 371 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (460)
T 3mkt_A 371 AVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK 448 (460)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 9999999999976 66 999999999999999999888777665543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=84.13 E-value=38 Score=34.19 Aligned_cols=24 Identities=13% Similarity=-0.110 Sum_probs=12.6
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHH
Q 007544 551 RATGLPGVWAGLTLFMGLRTVAGF 574 (599)
Q Consensus 551 ~~~Gi~G~~~a~~~~~~~~~i~~~ 574 (599)
...|....++...+..++..++.+
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHH
Confidence 446766666555554444444333
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.98 E-value=54 Score=20.92 Aligned_cols=25 Identities=0% Similarity=0.121 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 007544 341 MPGAAISTVVSQYIVAVTMIWFLNK 365 (599)
Q Consensus 341 v~Gaa~at~is~~i~~~~~~~~l~~ 365 (599)
+.|+.++.+++-.+...+.+++.+|
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeeeehHHHHHHHHHHHHHHHHeec
Confidence 4566666666666555555544433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=23.41 E-value=5.2e+02 Score=25.17 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 007544 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGRLG 173 (599)
Q Consensus 141 ~~~l~~~a~p~~~~~~~~~l~~lvd~~~ig~lg 173 (599)
.+.++....-..+..+.....+.+-..+..++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 57 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFT 57 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 344444444444444443444444333444444
No 6
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=21.65 E-value=4.4e+02 Score=23.66 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=44.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007544 411 GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVS--------KGDFKTVREITNFVLKIGVLTGVSLATILGLSFG 482 (599)
Q Consensus 411 g~~~vaa~~i~~~i~~~~~~~~~~l~~a~~~~is~~~g--------~~~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~ 482 (599)
++.-+.+|+++..+.-...++..-+++-..|-+-..-+ +.-.++.+.++-..-.++..+++++.++-....-
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999888888888888877776654322 2235566666666666666555554444433333
Q ss_pred hhhcccCC
Q 007544 483 SLAPLFTK 490 (599)
Q Consensus 483 ~l~~lf~~ 490 (599)
+ ++++..
T Consensus 136 W-VKF~~~ 142 (214)
T 4hkr_A 136 W-VKFYDL 142 (214)
T ss_dssp H-HHHTTT
T ss_pred e-EEeecC
Confidence 3 344443
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=17.92 E-value=2.1e+02 Score=18.84 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007544 341 MPGAAISTVVSQYIVAVTMIWFLNKKV 367 (599)
Q Consensus 341 v~Gaa~at~is~~i~~~~~~~~l~~~~ 367 (599)
+.+..++-++...+..+..+++++++.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 334444444444444444555555544
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.90 E-value=1.9e+02 Score=19.05 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhcc
Q 007544 355 VAVTMIWFLNKKV 367 (599)
Q Consensus 355 ~~~~~~~~l~~~~ 367 (599)
..+....+++|++
T Consensus 27 ~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 27 LGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHhheehhh
Confidence 3344445555544
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=16.04 E-value=8e+02 Score=24.33 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=8.8
Q ss_pred ccCChHHHHHHHHHHHHHHHH
Q 007544 551 RATGLPGVWAGLTLFMGLRTV 571 (599)
Q Consensus 551 ~~~Gi~G~~~a~~~~~~~~~i 571 (599)
...+....+.......++..+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 446 NAKSEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp GGSSTTHHHHHTHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHH
Confidence 344544444444443333333
No 10
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=15.47 E-value=75 Score=21.78 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHHH
Q 007544 235 RKQLSSVSTALLL 247 (599)
Q Consensus 235 ~~~~~~~~~~l~~ 247 (599)
.+..+.+.-.+.+
T Consensus 19 ~~he~Ty~gFi~~ 31 (51)
T 1m56_D 19 TQQEKTFAGFVRM 31 (51)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334333333
Done!