Query 007544
Match_columns 599
No_of_seqs 291 out of 1646
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 04:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007544.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007544hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 22.3 2.5E+02 0.019 24.9 17.9 26 338-363 406-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 13.1 4.1E+02 0.03 23.3 37.4 29 549-577 403-431 (447)
3 d1lghb_ f.3.1.1 (B:) Light-har 8.7 1.4E+02 0.011 18.0 2.9 32 234-265 11-42 (43)
4 d2fd6u3 g.7.1.3 (U:92-188) Uro 5.5 89 0.0065 22.0 0.8 20 30-49 16-35 (97)
5 d1pv7a_ f.38.1.2 (A:) Lactose 4.8 8.2E+02 0.06 20.2 34.0 27 551-577 374-400 (417)
6 d1nkzb_ f.3.1.1 (B:) Light-har 4.6 3.6E+02 0.026 15.7 4.3 33 451-483 7-39 (41)
7 d1jo5a_ f.3.1.1 (A:) Light-har 4.1 2.3E+02 0.016 17.5 1.9 32 234-265 16-47 (48)
8 d1xmeb2 f.17.2.1 (B:3-36) Bact 3.0 4.3E+02 0.032 14.1 3.1 14 558-571 15-28 (34)
9 d1f0la3 f.1.2.1 (A:201-380) Di 3.0 8.6E+02 0.062 17.5 4.9 27 167-193 145-171 (180)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 2.7 3E+02 0.022 19.1 1.9 36 228-263 5-40 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=22.31 E-value=2.5e+02 Score=24.94 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=13.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Q 007544 338 QLGMPGAAISTVVSQYIVAVTMIWFL 363 (599)
Q Consensus 338 ~~Gv~Gaa~at~is~~i~~~~~~~~l 363 (599)
..|..+..+.......+..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666555555554555544444444
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.12 E-value=4.1e+02 Score=23.30 Aligned_cols=29 Identities=14% Similarity=-0.056 Sum_probs=15.7
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHH
Q 007544 549 APRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (599)
Q Consensus 549 l~~~~Gi~G~~~a~~~~~~~~~i~~~~~l 577 (599)
....+|..+.++......++..++.+...
T Consensus 403 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 403 TVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777666655555555444444443
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=8.66 E-value=1.4e+02 Score=17.97 Aligned_cols=32 Identities=3% Similarity=-0.167 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 007544 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGP 265 (599)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 265 (599)
.++..+++.+++.+...+.++.=++.+...|+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46777788888888877777777766665543
No 4
>d2fd6u3 g.7.1.3 (U:92-188) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.51 E-value=89 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.3
Q ss_pred cCceeeeecccccccchhch
Q 007544 30 NASRFSLQQSRIGDGCAAFD 49 (599)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~ 49 (599)
.||..++|+..++++|-++.
T Consensus 16 RGr~qsLQCr~p~eqClevV 35 (97)
T d2fd6u3 16 RGRHQSLQCRSPEEQCLDVV 35 (97)
T ss_dssp TTCCEEEECSSTTCEEEEEE
T ss_pred hchhhccccCCchhhHhHHh
Confidence 58999999999999998833
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.85 E-value=8.2e+02 Score=20.24 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=14.0
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHH
Q 007544 551 RATGLPGVWAGLTLFMGLRTVAGFVRL 577 (599)
Q Consensus 551 ~~~Gi~G~~~a~~~~~~~~~i~~~~~l 577 (599)
..+|....++...+-.++..++.++.+
T Consensus 374 ~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 374 ESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456766665555444444444444443
No 6
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=4.56 E-value=3.6e+02 Score=15.68 Aligned_cols=33 Identities=0% Similarity=-0.276 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007544 451 DFKTVREITNFVLKIGVLTGVSLATILGLSFGS 483 (599)
Q Consensus 451 ~~~~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~ 483 (599)
+-+++.+.+..+.++...++++.-++.+...++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 346788888888888888877766666655544
No 7
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.09 E-value=2.3e+02 Score=17.49 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 007544 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGP 265 (599)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 265 (599)
.++..+++.+++.+-..++++.=++.+...|+
T Consensus 16 A~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 16 AQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45666777777777777777766766665554
No 8
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=3.02 E-value=4.3e+02 Score=14.05 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 007544 558 VWAGLTLFMGLRTV 571 (599)
Q Consensus 558 ~~~a~~~~~~~~~i 571 (599)
-|+++.+.+++.++
T Consensus 15 gwlafslamlfvfi 28 (34)
T d1xmeb2 15 GWLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35555555544443
No 9
>d1f0la3 f.1.2.1 (A:201-380) Diphtheria toxin, middle domain {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=3.01 E-value=8.6e+02 Score=17.50 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=19.6
Q ss_pred HhhhccCcchhhhhhhHHHHHHHHHHH
Q 007544 167 AYVGRLGSVELASAGVSISIFNIVSKL 193 (599)
Q Consensus 167 ~~ig~lg~~~laa~~~a~~i~~~~~~~ 193 (599)
.++|.+-+..+++|+..-++++++..+
T Consensus 145 plvgelvdigfaaynfvesiinlfqvv 171 (180)
T d1f0la3 145 PLVGELVDIGFAAYNFVESIINLFQVV 171 (180)
T ss_dssp HHHCCC--CCTTTTHHHHHHHHHHHHH
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 356777677899999999988887754
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.75 E-value=3e+02 Score=19.10 Aligned_cols=36 Identities=22% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 007544 228 PPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLAS 263 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 263 (599)
+++|...++..+++...+.+++++.+++..++..+.
T Consensus 5 dP~gp~a~~i~~L~~~~~~i~~iv~v~V~~~~~~~~ 40 (91)
T d1fftb2 5 DPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFA 40 (91)
T ss_dssp SCCSCCHHHHHHHHHHHHHHTTTTTTHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Done!