Query 007545
Match_columns 599
No_of_seqs 361 out of 2349
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 12:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 3E-111 6E-116 927.7 46.2 519 28-597 66-616 (727)
2 PLN03192 Voltage-dependent pot 100.0 1.1E-67 2.4E-72 614.7 44.4 432 27-538 49-488 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 2.6E-65 5.5E-70 524.7 33.8 399 80-547 28-434 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 5.6E-61 1.2E-65 496.1 27.7 456 22-538 199-660 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 6.2E-57 1.3E-61 468.0 30.9 429 26-548 214-653 (815)
6 PRK09392 ftrB transcriptional 99.4 1.2E-11 2.6E-16 123.7 15.4 113 415-539 6-122 (236)
7 PF00520 Ion_trans: Ion transp 99.3 1.3E-11 2.8E-16 118.7 13.0 188 86-337 2-200 (200)
8 cd00038 CAP_ED effector domain 99.3 3.6E-11 7.9E-16 104.3 11.8 104 423-538 1-109 (115)
9 PRK11753 DNA-binding transcrip 99.3 1.5E-10 3.3E-15 113.4 16.1 104 425-539 6-114 (211)
10 smart00100 cNMP Cyclic nucleot 99.2 1.7E-10 3.8E-15 100.5 11.5 106 423-538 1-111 (120)
11 PF00027 cNMP_binding: Cyclic 99.2 6.1E-11 1.3E-15 99.2 7.9 85 442-538 2-91 (91)
12 KOG0614 cGMP-dependent protein 99.1 4.1E-11 8.8E-16 125.8 6.2 114 413-538 269-389 (732)
13 PRK10402 DNA-binding transcrip 99.1 5.6E-10 1.2E-14 111.0 13.1 100 427-538 19-123 (226)
14 COG0664 Crp cAMP-binding prote 99.1 1E-09 2.2E-14 106.8 14.4 114 418-543 2-120 (214)
15 KOG1113 cAMP-dependent protein 99.1 7.4E-11 1.6E-15 119.0 6.4 110 415-536 121-230 (368)
16 PRK11161 fumarate/nitrate redu 99.1 9.2E-10 2E-14 109.9 13.9 111 418-541 15-131 (235)
17 KOG3713 Voltage-gated K+ chann 99.1 1.1E-09 2.5E-14 115.4 15.0 45 292-336 380-425 (477)
18 PLN02868 acyl-CoA thioesterase 99.1 7.3E-10 1.6E-14 120.0 12.2 110 415-538 7-120 (413)
19 COG2905 Predicted signal-trans 99.0 4.4E-09 9.5E-14 112.3 14.4 113 415-539 6-119 (610)
20 KOG0614 cGMP-dependent protein 99.0 2.4E-10 5.1E-15 120.2 4.8 114 411-536 149-262 (732)
21 TIGR03697 NtcA_cyano global ni 98.9 1.1E-08 2.4E-13 98.7 11.7 85 447-541 1-90 (193)
22 PF07885 Ion_trans_2: Ion chan 98.9 1.2E-08 2.6E-13 84.0 9.8 54 289-342 24-78 (79)
23 PRK09391 fixK transcriptional 98.8 3E-08 6.6E-13 98.8 12.2 91 433-538 32-127 (230)
24 KOG1113 cAMP-dependent protein 98.8 4.4E-09 9.6E-14 106.4 6.0 118 409-538 233-351 (368)
25 KOG1545 Voltage-gated shaker-l 98.8 4.4E-09 9.6E-14 105.9 4.6 42 292-333 396-438 (507)
26 PRK13918 CRP/FNR family transc 98.8 6.7E-08 1.5E-12 94.0 11.6 79 438-529 5-90 (202)
27 KOG1419 Voltage-gated K+ chann 98.6 2E-07 4.2E-12 99.1 12.0 88 286-383 266-354 (654)
28 KOG1420 Ca2+-activated K+ chan 97.8 2.7E-05 5.8E-10 83.1 6.4 66 287-352 286-352 (1103)
29 KOG3684 Ca2+-activated K+ chan 97.8 0.0033 7.1E-08 66.5 21.2 89 287-386 285-374 (489)
30 PRK10537 voltage-gated potassi 97.8 4E-05 8.8E-10 82.1 7.1 53 289-341 168-221 (393)
31 KOG4390 Voltage-gated A-type K 97.7 5.4E-06 1.2E-10 84.6 -1.0 51 292-342 359-414 (632)
32 KOG2968 Predicted esterase of 97.6 7.1E-05 1.5E-09 84.0 5.2 102 430-543 499-605 (1158)
33 PF08412 Ion_trans_N: Ion tran 97.5 0.00011 2.4E-09 59.4 3.7 34 27-60 34-67 (77)
34 PF01007 IRK: Inward rectifier 97.1 0.003 6.5E-08 66.2 10.0 52 288-339 83-137 (336)
35 PRK11832 putative DNA-binding 97.0 0.0099 2.1E-07 57.6 12.4 109 430-565 13-123 (207)
36 KOG1418 Tandem pore domain K+ 96.8 0.0015 3.3E-08 70.5 5.4 57 289-345 115-172 (433)
37 KOG2968 Predicted esterase of 96.4 0.0098 2.1E-07 67.5 8.3 100 434-539 110-215 (1158)
38 KOG3542 cAMP-regulated guanine 94.9 0.043 9.2E-07 60.4 5.9 113 415-538 280-393 (1283)
39 KOG2302 T-type voltage-gated C 94.8 1.2 2.6E-05 51.7 16.9 19 84-102 1159-1177(1956)
40 PF04831 Popeye: Popeye protei 94.8 0.64 1.4E-05 42.6 12.2 107 426-539 14-122 (153)
41 KOG4404 Tandem pore domain K+ 92.1 0.045 9.7E-07 55.7 0.1 51 289-339 80-131 (350)
42 KOG3827 Inward rectifier K+ ch 91.4 0.69 1.5E-05 48.4 7.8 51 289-339 112-165 (400)
43 KOG4404 Tandem pore domain K+ 90.8 0.27 5.8E-06 50.2 4.1 57 289-345 186-251 (350)
44 KOG1418 Tandem pore domain K+ 89.9 0.085 1.8E-06 56.9 -0.3 47 288-334 241-296 (433)
45 KOG3193 K+ channel subunit [In 88.5 1.9 4.2E-05 46.8 8.5 41 291-331 219-260 (1087)
46 PLN03223 Polycystin cation cha 87.5 27 0.00058 42.8 17.6 29 316-344 1397-1425(1634)
47 PF08006 DUF1700: Protein of u 86.7 2.9 6.4E-05 39.8 8.1 54 358-413 7-64 (181)
48 COG4709 Predicted membrane pro 82.6 5.6 0.00012 37.8 7.5 74 358-433 7-84 (195)
49 KOG3676 Ca2+-permeable cation 77.5 69 0.0015 37.2 15.3 76 301-380 601-683 (782)
50 PF07883 Cupin_2: Cupin domain 73.7 4.3 9.3E-05 31.6 3.6 44 442-487 3-47 (71)
51 PF05899 Cupin_3: Protein of u 73.4 4.3 9.4E-05 32.6 3.5 40 445-487 15-54 (74)
52 PF14377 DUF4414: Domain of un 71.1 9.4 0.0002 33.2 5.3 45 369-413 52-106 (108)
53 PF00612 IQ: IQ calmodulin-bin 70.6 5.7 0.00012 23.5 2.7 17 558-574 3-19 (21)
54 PF08763 Ca_chan_IQ: Voltage g 67.2 7.8 0.00017 26.3 3.0 23 555-577 8-30 (35)
55 KOG2301 Voltage-gated Ca2+ cha 66.2 47 0.001 42.1 11.7 37 303-339 1065-1106(1592)
56 KOG3542 cAMP-regulated guanine 64.9 7.7 0.00017 43.5 4.2 89 417-525 38-126 (1283)
57 TIGR03037 anthran_nbaC 3-hydro 58.4 21 0.00046 33.2 5.3 46 440-487 30-80 (159)
58 smart00015 IQ Short calmodulin 51.2 22 0.00047 22.2 2.9 20 556-575 3-22 (26)
59 PF07697 7TMR-HDED: 7TM-HD ext 45.6 86 0.0019 30.3 7.8 33 426-458 173-207 (222)
60 PRK13290 ectC L-ectoine syntha 44.8 40 0.00087 30.1 4.8 48 440-488 38-86 (125)
61 COG1917 Uncharacterized conser 40.9 42 0.00092 29.8 4.4 50 439-490 45-95 (131)
62 PF02037 SAP: SAP domain; Int 39.8 60 0.0013 21.9 3.9 25 358-382 6-35 (35)
63 PF13314 DUF4083: Domain of un 37.5 1.5E+02 0.0033 22.6 5.9 40 321-366 14-56 (58)
64 PRK13264 3-hydroxyanthranilate 36.0 59 0.0013 30.9 4.6 44 442-487 38-86 (177)
65 PF14377 DUF4414: Domain of un 35.4 68 0.0015 27.8 4.6 48 369-416 8-68 (108)
66 PHA03029 hypothetical protein; 34.3 1.9E+02 0.0042 23.1 6.4 39 312-350 2-40 (92)
67 COG3450 Predicted enzyme of th 33.2 93 0.002 27.4 5.1 41 444-487 52-92 (116)
68 KOG0498 K+-channel ERG and rel 32.1 2.6E+02 0.0055 32.8 9.7 42 399-440 371-417 (727)
69 KOG0162 Myosin class I heavy c 32.0 49 0.0011 37.9 3.8 27 552-579 693-719 (1106)
70 PF00060 Lig_chan: Ligand-gate 31.9 47 0.001 29.7 3.2 58 287-344 42-99 (148)
71 PF13867 SAP30_Sin3_bdg: Sin3 31.8 1.1E+02 0.0025 22.8 4.7 37 358-399 3-46 (53)
72 PF01484 Col_cuticle_N: Nemato 29.0 2.3E+02 0.0049 20.6 6.5 37 318-354 9-45 (53)
73 COG0662 {ManC} Mannose-6-phosp 27.8 1.1E+02 0.0024 27.1 4.8 49 437-487 36-85 (127)
74 PF10011 DUF2254: Predicted me 27.2 2.8E+02 0.0061 29.6 8.6 57 286-342 97-154 (371)
75 PF14841 FliG_M: FliG middle d 26.2 69 0.0015 26.0 2.9 41 395-443 30-70 (79)
76 COG5559 Uncharacterized conser 25.2 65 0.0014 24.6 2.3 22 367-388 8-29 (65)
77 PF08285 DPM3: Dolichol-phosph 24.5 4.3E+02 0.0093 22.2 9.0 42 329-370 48-89 (91)
78 cd07313 terB_like_2 tellurium 24.0 3.5E+02 0.0076 22.6 7.1 56 358-413 21-79 (104)
79 KOG2378 cAMP-regulated guanine 23.6 72 0.0016 34.6 3.2 44 483-537 1-45 (573)
80 PF13623 SurA_N_2: SurA N-term 23.3 2E+02 0.0044 26.4 5.7 45 319-366 9-66 (145)
81 PRK09108 type III secretion sy 23.0 3.2E+02 0.0069 29.1 7.9 71 309-382 173-243 (353)
82 PRK06771 hypothetical protein; 22.8 4.3E+02 0.0093 22.3 6.9 49 315-369 2-50 (93)
83 KOG3609 Receptor-activated Ca2 22.4 1.3E+03 0.029 27.3 14.2 73 290-367 554-633 (822)
84 PF15157 IQ-like: IQ-like 21.8 1.2E+02 0.0026 25.0 3.4 15 560-574 51-65 (97)
85 PF12973 Cupin_7: ChrR Cupin-l 21.5 1.3E+02 0.0027 24.9 3.7 63 439-523 26-88 (91)
86 PRK07668 hypothetical protein; 21.1 2.9E+02 0.0062 28.0 6.7 56 358-413 10-67 (254)
87 PLN03192 Voltage-dependent pot 21.0 1.4E+03 0.031 27.1 20.1 44 368-416 357-400 (823)
88 PRK11171 hypothetical protein; 20.4 2E+02 0.0043 29.2 5.6 48 438-487 185-233 (266)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-111 Score=927.69 Aligned_cols=519 Identities=31% Similarity=0.535 Sum_probs=467.2
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHhhcceeeEEEEEeccceeEeecCCchhhHHHHHHHHHHHHHHHHHHhhcccee
Q 007545 28 APRNSPSSSRSFDNWNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVYIRAHTHVP 107 (599)
Q Consensus 28 ~~~ii~P~s~~~~~Wd~~~~~~~~~~~~v~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~DI~l~F~tay~ 107 (599)
..+++||.|++++.||.+++++|+++++++|++||+|..++...| +|..+...++++++++|++|++||++||||||+
T Consensus 66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 334999999999999999999999999999999999999888888 899999999999999999999999999999999
Q ss_pred ccccccCCCcc-cCHHHHHHHhHH--HHHHHHHhcchhhhhheeeecCcccchhhhhhhHHHHHHHHhhhhHHHHHHHHH
Q 007545 108 VPDFINGRGFH-TSKWTFAKKFFC--LLNGIVSVLPLPQAVIYLVVPKMRGHKFLSAMSLLKFVLVAQFLPRFVRMYQLF 184 (599)
Q Consensus 108 ~~~~v~~~G~l-~d~~~Ia~~Ylk--F~~Dlls~lPl~~i~~~~~~~~~~~~~~~~~~~~lrl~~l~~~l~rl~ri~~l~ 184 (599)
+++ .-++ .||++||+||++ |++|++|++|+|++++|.++ +..........+..+.++|++||++|+++++
T Consensus 144 ~~~----s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~ 216 (727)
T KOG0498|consen 144 DPS----SYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVIPLF 216 (727)
T ss_pred CCC----CceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 983 1267 999999999999 99999999999999999876 1111222233566666778889999999999
Q ss_pred HHhhhchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcCCCCCCcccccCCCccccccCCCCCC
Q 007545 185 TKAASSSGAVH--GLASGIFHFLVYLLVSHSFGALWYFLAIVRVSVCWRQACLHAGCSSHDSFYCDDDKSLNAFCPAKLR 262 (599)
Q Consensus 185 ~~~~~~~~~~~--~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~~~~~~~~~~~~sW~~~~~~~~~~ 262 (599)
+++++.+|++. +|+++++++++|++++||.||+||++|.++.+.||+++ +|+...+..-..
T Consensus 217 ~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-----------------tw~~~l~~~~~~ 279 (727)
T KOG0498|consen 217 ARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-----------------TWLGSLGRLLSC 279 (727)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-----------------cccccccccccc
Confidence 99999999998 99998899999999999999999999999888888764 344331100011
Q ss_pred CCCCCccccchhhhccCcccccchhhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 263 DPTSFDFGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFL 341 (599)
Q Consensus 263 ~~~~f~~giy~~a~~~~~~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il 341 (599)
.+..|+||+|.+ +.+|++|+|||++||| +||||++|+|..|++|+|++|++|+++||++||||+++|
T Consensus 280 ~~~~~~fg~~s~------------~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~i 347 (727)
T KOG0498|consen 280 YNLSFTFGIYSL------------ALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALL 347 (727)
T ss_pred CcccccccchhH------------HHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhH
Confidence 234477888754 4599999999999999 999999999999999999999999999999999999999
Q ss_pred HHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhhhcCC
Q 007545 342 QHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEV 421 (599)
Q Consensus 342 ~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v 421 (599)
|+++.+.++|+.| ++++++||++|+||++||+||++|+||+|+.++|+||+++|++||++||+||++|+|.++|+++
T Consensus 348 qs~tsR~~~~r~k---~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~v 424 (727)
T KOG0498|consen 348 QSLTSRTEEMRDK---MRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKV 424 (727)
T ss_pred HHHhHHHHHHHHH---HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhC
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCc--cee--eeCCCCCeechhhhHhhhc
Q 007545 422 PMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSST--SVF--TPRKDGEFCGEELVSWAVD 497 (599)
Q Consensus 422 plF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~--g~~--~~l~~G~~fGE~~l~~~l~ 497 (599)
|+|+++|++++++||.++|+.+|+|||+|++|||+.++||||++| .+++...+ |.. ..|++||+|||+.++||++
T Consensus 425 pLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG-~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~ 503 (727)
T KOG0498|consen 425 PLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRG-SLESITTDGGGFFVVAILGPGDFFGEELLTWCLD 503 (727)
T ss_pred chhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEee-eEEEEEccCCceEEEEEecCCCccchHHHHHHhc
Confidence 999999999999999999999999999999999999999999999 99999433 333 3399999999998889985
Q ss_pred cCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc-hhchhhHHhhccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 007545 498 QQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ-PDGQLPKCFRYGSEKWRNWAAVIIQQAWCRQRKKKFQT 576 (599)
Q Consensus 498 ~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~-~~~~l~~~~r~~~~~~~~~~~~~~q~~~~~~~~r~~~~ 576 (599)
. |+++||+|+|+||++.|+++||+.++++||+ +++++++++|+||++||+|++++||++|++|.+||.++
T Consensus 504 ~---------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~ 574 (727)
T KOG0498|consen 504 L---------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEE 574 (727)
T ss_pred C---------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccc
Confidence 2 4489999999999999999999999999999 99999999999999999999999999999999999776
Q ss_pred hhh---------------------hhhhhhhhhhhccCcCCC
Q 007545 577 SLL---------------------AVTPSRFAVSSLRPIRPE 597 (599)
Q Consensus 577 ~~~---------------------~~~~~~~~~~~~~~~~~~ 597 (599)
++. +.+|+|||+|+.++++.+
T Consensus 575 ~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 616 (727)
T KOG0498|consen 575 ELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTA 616 (727)
T ss_pred hhhhhcchhhhccccccchhhhhcccccccccccCCCccccc
Confidence 553 568999999999998753
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.1e-67 Score=614.74 Aligned_cols=432 Identities=15% Similarity=0.187 Sum_probs=353.2
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHhhcceeeEEEEEeccceeEeecCCchhhHHHHHHHHHHHHHHHHHHhhccce
Q 007545 27 SAPRNSPSSSRSFDNWNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVYIRAHTHV 106 (599)
Q Consensus 27 ~~~~ii~P~s~~~~~Wd~~~~~~~~~~~~v~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~DI~l~F~tay 106 (599)
...++|+|.|++++.||.++++++++++++.|+.+.+ .. ......+.+++.++|++|++||+++|+|||
T Consensus 49 ~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F--~~---------~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay 117 (823)
T PLN03192 49 SDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAF--LN---------ASPKRGLEIADNVVDLFFAVDIVLTFFVAY 117 (823)
T ss_pred cCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHe--eC---------CCCCCCeeeHHHHHHHHHHHHHHhheeEEE
Confidence 3445899999999999999999999999999986432 11 111123566889999999999999999999
Q ss_pred eccccccCCCcc-cCHHHHHHHhHH--HHHHHHHhcchhhhhheeeecCcccchhhhhhhHHHHHHHHhhhhHHHHHHHH
Q 007545 107 PVPDFINGRGFH-TSKWTFAKKFFC--LLNGIVSVLPLPQAVIYLVVPKMRGHKFLSAMSLLKFVLVAQFLPRFVRMYQL 183 (599)
Q Consensus 107 ~~~~~v~~~G~l-~d~~~Ia~~Ylk--F~~Dlls~lPl~~i~~~~~~~~~~~~~~~~~~~~lrl~~l~~~l~rl~ri~~l 183 (599)
+++ +.|.+ .|+++|++||+| |++|++|++|++++...+. .. .......++++++|+ .|+.|+.++
T Consensus 118 ~d~----~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~~---~~~~~~~~~l~llrl----~Rl~ri~~~ 185 (823)
T PLN03192 118 IDP----RTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT-GT---VKLNLSYSLLGLLRF----WRLRRVKQL 185 (823)
T ss_pred EeC----CCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc-CC---ccchHHHHHHHHHHH----HHHHHHHHH
Confidence 987 46778 999999999999 9999999999987643221 11 111122234444444 345555555
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcCCCCCCcccccCCCccccccCCCCCCC
Q 007545 184 FTKAASSSGAVHGLASGIFHFLVYLLVSHSFGALWYFLAIVRVSVCWRQACLHAGCSSHDSFYCDDDKSLNAFCPAKLRD 263 (599)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~~~~~~~~~~~~sW~~~~~~~~~~~ 263 (599)
+.++++...+...+...+..++..++++||+||+||+++.. ....+.+|+....+
T Consensus 186 ~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~--------------------~~~~~~~Wi~~~~~----- 240 (823)
T PLN03192 186 FTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADR--------------------YPHQGKTWIGAVIP----- 240 (823)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------cCCCCCchHHHhhh-----
Confidence 66555433322233333333344456899999999999831 01124579864110
Q ss_pred CCCCccccchhhhccCcccccchhhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 264 PTSFDFGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQ 342 (599)
Q Consensus 264 ~~~f~~giy~~a~~~~~~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~ 342 (599)
+ ..+.+++.+|++|+|||++||| |||||++|+|..|++|++++|++|+++|||+||+|++++.
T Consensus 241 --------------~--~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~ 304 (823)
T PLN03192 241 --------------N--FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVV 304 (823)
T ss_pred --------------c--cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 2356899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhhhcCCC
Q 007545 343 HINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEVP 422 (599)
Q Consensus 343 ~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~vp 422 (599)
+.+.+.++|+++ ++.+++||++++||++||+||++|++|+|+. ++.++++++++||++||.+|..+++.+.++++|
T Consensus 305 ~~~~~~~~f~~~---~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~ 380 (823)
T PLN03192 305 EGTRRTMEFRNS---IEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVY 380 (823)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCc
Confidence 999999999999 9999999999999999999999999999976 468899999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEec-Ccc---eeeeCCCCCeechhhhHhhhcc
Q 007545 423 MLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWS-STS---VFTPRKDGEFCGEELVSWAVDQ 498 (599)
Q Consensus 423 lF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~-~~g---~~~~l~~G~~fGE~~l~~~l~~ 498 (599)
+|++++++++.+++..++++.|+|||.|+.+||.++++|||.+| .|++.. .++ ....+++|++|||..+. ..
T Consensus 381 lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G-~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l---~~ 456 (823)
T PLN03192 381 LFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSG-EVEIIDSEGEKERVVGTLGCGDIFGEVGAL---CC 456 (823)
T ss_pred chhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEec-EEEEEEecCCcceeeEEccCCCEecchHHh---cC
Confidence 99999999999999999999999999999999999999999999 999982 222 23449999999999772 21
Q ss_pred CCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 499 QSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 499 ~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
.++++|++|.++|+++.|++++|.++++++|+
T Consensus 457 --------~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~ 488 (823)
T PLN03192 457 --------RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488 (823)
T ss_pred --------CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence 15689999999999999999999999999998
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-65 Score=524.68 Aligned_cols=399 Identities=16% Similarity=0.269 Sum_probs=329.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccceeccccccCCCcc-cCHHHHHHHhHH---HHHHHHHhcchhhhhheeeecCccc
Q 007545 80 TFTLVVLRTVLDSFQIVYVYIRAHTHVPVPDFINGRGFH-TSKWTFAKKFFC---LLNGIVSVLPLPQAVIYLVVPKMRG 155 (599)
Q Consensus 80 ~~~~~~~~~i~D~~f~~DI~l~F~tay~~~~~v~~~G~l-~d~~~Ia~~Ylk---F~~Dlls~lPl~~i~~~~~~~~~~~ 155 (599)
-..|..+|++.|++|++||+++.||||+ ++|.+ +|-++.++||.+ |.+|++|.+|+|++.++.. .
T Consensus 28 ~~~wl~ld~~~D~vyllDi~v~~R~gyl------eqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~-----~ 96 (536)
T KOG0500|consen 28 LENWLPLDYLFDFVYLLDIIVRSRTGYL------EQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG-----S 96 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH------hcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC-----c
Confidence 3467889999999999999999999999 57999 999999999998 9999999999998865431 1
Q ss_pred chhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 007545 156 HKFLSAMSLLKFVLVAQFLPRFVRMYQLFTKAASSSGAVHGLASGIFHFLVY-LLVSHSFGALWYFLAIVRVSVCWRQAC 234 (599)
Q Consensus 156 ~~~~~~~~~lrl~~l~~~l~rl~ri~~l~~~~~~~~~~~~~~~~~~~~l~~~-~l~~H~~aC~wy~i~~~~~~~c~~~~c 234 (599)
. ...|+.|| .|++|++..+.+-+..+.+..++ .+.+|+.+ +++.||.||++|+++..
T Consensus 97 ~------~~~r~nRl----lk~yRl~~F~~rTetrT~~Pn~f--ri~~lv~~~~ilfHWNaClYf~iS~~---------- 154 (536)
T KOG0500|consen 97 A------SLERLNRL----LKIYRLFEFFDRTETRTTYPNAF--RISKLVHYCLILFHWNACLYFLISKA---------- 154 (536)
T ss_pred c------hHHHHHHH----HHHHHHHHHHHHhccccCCchHH--HHHHHHHHHHHHHHHhhHHHHhhhHh----------
Confidence 1 12233333 24455554444433333433322 23455554 45899999999999952
Q ss_pred hcCCCCCCcccccCCCccccccCCCCCCCCCCCccccchhhhccCcccccchhhHHHHHHHHHHHHhc-cccccccccCc
Q 007545 235 LHAGCSSHDSFYCDDDKSLNAFCPAKLRDPTSFDFGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDA 313 (599)
Q Consensus 235 ~~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~f~~giy~~a~~~~~~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~ 313 (599)
.|. ++++|...... + +.| . + ....++..+|++|+||+..||| +|. ..+|.++
T Consensus 155 --~g~--------~~d~wvY~~i~--d---~~~-----~-----~-c~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~ 207 (536)
T KOG0500|consen 155 --IGF--------TTDDWVYPKIN--D---PEF-----A-----T-CDAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTS 207 (536)
T ss_pred --cCc--------cccccccCCcc--C---ccc-----c-----c-cchhHHHHHHHHHHHHHhhhhhhccC-CCCCCcC
Confidence 122 35568754210 0 001 0 0 1134689999999999999999 998 6688999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCC
Q 007545 314 WENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFN 393 (599)
Q Consensus 314 ~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~ 393 (599)
.|.+|.|+-.++|+++||-++|+||++++++++.+.||+++ |+.+++||+.|++|+.||.||.+||.|.|.+.+..|
T Consensus 208 ~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~---mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~D 284 (536)
T KOG0500|consen 208 SEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAK---MDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVD 284 (536)
T ss_pred chhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHhhCChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEec
Q 007545 394 LHQFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWS 473 (599)
Q Consensus 394 e~~ll~~Lp~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~ 473 (599)
|+++++.||+.|+.+|+.+++.+.|++|++|+++++.++.+++.++++++|.|||+|+++||.+.+||+|.+| .+++.+
T Consensus 285 Eeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G-~L~Vv~ 363 (536)
T KOG0500|consen 285 EEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEG-KLAVVA 363 (536)
T ss_pred HHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEcc-EEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999997
Q ss_pred Ccce--eeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhchhhHHh
Q 007545 474 STSV--FTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQLPKCF 547 (599)
Q Consensus 474 ~~g~--~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~l~~~~ 547 (599)
++|. ..++++|++|||.++.+ -+.. .++.+|+++|+.+.++++++|+++|+.+++++||+..+.+....
T Consensus 364 dDg~t~~~~L~~G~~FGEisIln---i~g~--~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~kg 434 (536)
T KOG0500|consen 364 DDGVTVFVTLKAGSVFGEISILN---IKGN--KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEKG 434 (536)
T ss_pred cCCcEEEEEecCCceeeeeEEEE---EcCc--ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHHH
Confidence 7773 34599999999998733 2322 23447899999999999999999999999999999666665433
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-61 Score=496.14 Aligned_cols=456 Identities=17% Similarity=0.244 Sum_probs=365.0
Q ss_pred hhcccCCCC-ccCCCChhHHHHHHHHHHHHHHHHhhcceeeEEEEEeccceeEeecCCchhhHHHHHHHHHHHHHHHHHH
Q 007545 22 RNRIISAPR-NSPSSSRSFDNWNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVYI 100 (599)
Q Consensus 22 ~~~~~~~~~-ii~P~s~~~~~Wd~~~~~~~~~~~~v~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~DI~l 100 (599)
|+-.+..|| +|.-...|+..||-+++++.+|+.++.|+-. .+-+.. .-...|.+++.++|++|++||++
T Consensus 199 rQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNv--aFKnk~--------~~~vs~lvvDSiVDVIF~vDIvL 268 (971)
T KOG0501|consen 199 RQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNV--AFKNKQ--------RNNVSWLVVDSIVDVIFFVDIVL 268 (971)
T ss_pred hhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeee--eecccc--------cCceeEEEecchhhhhhhhhhhh
Confidence 444555665 7889999999999999999999999999642 221111 11234567899999999999999
Q ss_pred hhccceeccccccCCCcc-cCHHHHHHHhHH--HHHHHHHhcchhhhhheeeecCcccchhhhhhhHHHHHHHHhhhhHH
Q 007545 101 RAHTHVPVPDFINGRGFH-TSKWTFAKKFFC--LLNGIVSVLPLPQAVIYLVVPKMRGHKFLSAMSLLKFVLVAQFLPRF 177 (599)
Q Consensus 101 ~F~tay~~~~~v~~~G~l-~d~~~Ia~~Ylk--F~~Dlls~lPl~~i~~~~~~~~~~~~~~~~~~~~lrl~~l~~~l~rl 177 (599)
||||.|+.| .||+ .||+.|..||+| |++|++||+|+|.+-.+-... .........|+.+||+ ||
T Consensus 269 NFHTTFVGP-----gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d----egI~SLFSaLKVVRLL----RL 335 (971)
T KOG0501|consen 269 NFHTTFVGP-----GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD----EGIGSLFSALKVVRLL----RL 335 (971)
T ss_pred hcceeeecC-----CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc----ccHHHHHHHHHHHHHH----HH
Confidence 999999987 5899 999999999999 999999999999875432111 1122233445555443 23
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcCCCCCCcccccCCCccccccC
Q 007545 178 VRMYQLFTKAASSSGAVHGLASGIFHFLVYLLVSHSFGALWYFLAIVRVSVCWRQACLHAGCSSHDSFYCDDDKSLNAFC 257 (599)
Q Consensus 178 ~ri~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~~~~~~~~~~~~sW~~~~~ 257 (599)
-|+ .+++..+-.+ .-+..++.+.+|++++||+||+||.+|-.+.-+ .-++. + ..++|+....
T Consensus 336 GRV---aRKLD~YlEY--GAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~---------~~~n~--i--~~dsWL~kLa 397 (971)
T KOG0501|consen 336 GRV---ARKLDHYLEY--GAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRD---------EMDNT--I--QPDSWLWKLA 397 (971)
T ss_pred HHH---HHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhheeccchheec---------ccccc--c--ccchHHHHHH
Confidence 333 3333322111 112234456788999999999999999422111 00010 1 1357986532
Q ss_pred CCCCCCCCCCccccchhhhccCc-ccccchhhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHH
Q 007545 258 PAKLRDPTSFDFGMFHDALQSGI-VEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLW 335 (599)
Q Consensus 258 ~~~~~~~~~f~~giy~~a~~~~~-~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg 335 (599)
. ..+++|+|.. .. .|. +..++--..|+.|+|+.++.|| ||+|.+.|.++.|.+|++.+|++|.++||-++|
T Consensus 398 ~---~~~tpY~~~~-s~---~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG 470 (971)
T KOG0501|consen 398 N---DIGTPYNYNL-SN---KGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFG 470 (971)
T ss_pred h---hcCCCceecc-CC---CceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 2344555431 11 111 2345667899999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcch
Q 007545 336 NVMQFLQHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCL 415 (599)
Q Consensus 336 ~i~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~ 415 (599)
++++|+|.|.+....|.+- ++.+.+||+-.++|+.|.+||.+|.--.|.-++|+|.+++|+--|+++|.||..|+++
T Consensus 471 ~vTTI~QQM~s~T~rYHeM---lnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNR 547 (971)
T KOG0501|consen 471 HVTTIIQQMTSNTNRYHEM---LNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNR 547 (971)
T ss_pred hHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecch
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhh
Q 007545 416 PVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWA 495 (599)
Q Consensus 416 ~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~ 495 (599)
+...+.|-|+-.++..+++++..++....+|||.|+..|+..|.+.||++| .+|+...+.++.+|+.||+||+++.
T Consensus 548 KVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsG-SLEVIQDDEVVAILGKGDVFGD~FW--- 623 (971)
T KOG0501|consen 548 KVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSG-SLEVIQDDEVVAILGKGDVFGDEFW--- 623 (971)
T ss_pred hhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEec-ceEEeecCcEEEEeecCccchhHHh---
Confidence 999999999999999999999999999999999999999999999999999 9999988888899999999999866
Q ss_pred hccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 496 VDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 496 l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+. ..+..+.++|+|+++|++..+.++.+.++++-|..
T Consensus 624 ---K~---~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtA 660 (971)
T KOG0501|consen 624 ---KE---NTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTA 660 (971)
T ss_pred ---hh---hhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHH
Confidence 21 22336789999999999999999999999987744
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-57 Score=467.97 Aligned_cols=429 Identities=15% Similarity=0.226 Sum_probs=353.6
Q ss_pred cCCCCccCCCC-hhHHHHHHHHHHHHHHHHhhcceeeEEEEEeccceeEeecCCchhhHHHHHHHHHHHHHHHHH-Hhhc
Q 007545 26 ISAPRNSPSSS-RSFDNWNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVY-IRAH 103 (599)
Q Consensus 26 ~~~~~ii~P~s-~~~~~Wd~~~~~~~~~~~~v~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~DI~-l~F~ 103 (599)
.+.+..|||.. ++...|=.++.++..+++|++|+...+|+....+ ...|.+.++++|++|++||+ ++=|
T Consensus 214 ~~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~R 284 (815)
T KOG0499|consen 214 IKLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPR 284 (815)
T ss_pred cCCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhh
Confidence 45677899999 9999999888888899999999999889865322 23577899999999999998 5667
Q ss_pred cceeccccccCCCcc-cCHHHHHHHhHH---HHHHHHHhcchhhhhheeeecCcccchhhhhhhHHHHHHHHhhhhHHHH
Q 007545 104 THVPVPDFINGRGFH-TSKWTFAKKFFC---LLNGIVSVLPLPQAVIYLVVPKMRGHKFLSAMSLLKFVLVAQFLPRFVR 179 (599)
Q Consensus 104 tay~~~~~v~~~G~l-~d~~~Ia~~Ylk---F~~Dlls~lPl~~i~~~~~~~~~~~~~~~~~~~~lrl~~l~~~l~rl~r 179 (599)
.-|+ ..|.+ .|.+...+||++ |-+|++|+||+|++...+. .. -++|+-|+++| .-++-
T Consensus 285 l~fv------rgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G-----~~------p~wR~~R~lK~-~sF~e 346 (815)
T KOG0499|consen 285 LQFV------RGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG-----FN------PMWRANRMLKY-TSFFE 346 (815)
T ss_pred heee------eCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc-----cc------hhhhhhhHHHH-HHHHH
Confidence 7776 35788 999999999998 9999999999998765432 11 22343333332 22222
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhhhcCCCCCCcccccCCCccccccCC
Q 007545 180 MYQLFTKAASSSGAVHGLASGIFHFLVYLL-VSHSFGALWYFLAIVRVSVCWRQACLHAGCSSHDSFYCDDDKSLNAFCP 258 (599)
Q Consensus 180 i~~l~~~~~~~~~~~~~~~~~~~~l~~~~l-~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~~~~~~~~~~~~sW~~~~~~ 258 (599)
++..+..+... +.+-.+..-..||+ +.|+.||++|+.+-. ..-|.+.|+.+
T Consensus 347 ~~~~Le~i~s~-----~y~~RV~rT~~YmlyilHinacvYY~~Say--------------------qglG~~rWVyd--- 398 (815)
T KOG0499|consen 347 FNHHLESIMSK-----AYIYRVIRTTGYLLYILHINACVYYWASAY--------------------QGLGTTRWVYD--- 398 (815)
T ss_pred HHHHHHHHhcc-----hhhhhhHHHHHHHHHHHhhhHHHHHHHHhh--------------------cccccceeEEc---
Confidence 22222222111 11112223344443 789999999998831 12245678853
Q ss_pred CCCCCCCCCccccchhhhccCcccccchhhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 007545 259 AKLRDPTSFDFGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNV 337 (599)
Q Consensus 259 ~~~~~~~~f~~giy~~a~~~~~~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i 337 (599)
.-...|++|+|||+.|++ +|. ...|+|..|++|..+--+.|+++||.+||+|
T Consensus 399 --------------------------g~Gn~YiRCyyfa~kt~~tiG~-~P~P~~~~E~Vf~~~~w~mGVFvFslliGQm 451 (815)
T KOG0499|consen 399 --------------------------GEGNEYIRCYYFAVKTLITIGG-LPEPQTLFEIVFQLLNWFMGVFVFSLLIGQM 451 (815)
T ss_pred --------------------------CCCCceeeehhhHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113469999999999999 995 6778999999999999999999999999999
Q ss_pred HHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhh
Q 007545 338 MQFLQHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPV 417 (599)
Q Consensus 338 ~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~ 417 (599)
-.++.+.+.++++||.. |++.-.||+.-+||++.|.|||.+|+|.|.+++-.||.+||+.||..|+.+++..++..+
T Consensus 452 RDvi~aAt~nq~~fr~~---mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~ 528 (815)
T KOG0499|consen 452 RDVIGAATANQNYFRAC---MDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSI 528 (815)
T ss_pred HHHHhhhhccHHHHHHH---HHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhh
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCcc--eeeeCCCCCeechhhhHh
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTS--VFTPRKDGEFCGEELVSW 494 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g--~~~~l~~G~~fGE~~l~~ 494 (599)
+.+|.+|++|+.+.+..++.+++..+|.|||+|++.||.+.+||+|..| +|++. |.+| +..+|++|++|||++|
T Consensus 529 lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~G-qvQVlGGp~~~~Vl~tL~~GsVFGEISL-- 605 (815)
T KOG0499|consen 529 LSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHG-QVQVLGGPDGTKVLVTLKAGSVFGEISL-- 605 (815)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecc-eEEEecCCCCCEEEEEecccceeeeeee--
Confidence 9999999999999999999999999999999999999999999999999 99999 3333 5566999999999988
Q ss_pred hhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhchhhHHhh
Q 007545 495 AVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQLPKCFR 548 (599)
Q Consensus 495 ~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~l~~~~r 548 (599)
|.-. +..+||++|+|-.+|.+++|+++||.+++.+||+..+.|++.+|
T Consensus 606 -Laig-----G~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr 653 (815)
T KOG0499|consen 606 -LAIG-----GGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKAR 653 (815)
T ss_pred -eeec-----CCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHH
Confidence 3221 12378999999999999999999999999999997777776665
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.36 E-value=1.2e-11 Score=123.68 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=98.2
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcce--eeeCCCCCeechh
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSV--FTPRKDGEFCGEE 490 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~--~~~l~~G~~fGE~ 490 (599)
.+.++.+|+|+.++++.++.+....+.+.|.+|+.|+++||.++.+|+|.+| .|+++ .+++. ...+.+|++||+.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G-~v~~~~~~~~~~~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDG-LVELSASSQDRETTLAILRPVSTFILA 84 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeC-EEEEEEcCCCceEEEEEeCCCchhhhH
Confidence 4578999999999999999999999999999999999999999999999999 99998 22222 2238999999998
Q ss_pred hhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 491 LVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 491 ~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
.+ +... ++..+++|+++|+++.+++++|++++.++|..
T Consensus 85 ~~---~~~~--------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l 122 (236)
T PRK09392 85 AV---VLDA--------PYLMSARTLTRSRVLMIPAELVREAMSEDPGF 122 (236)
T ss_pred HH---hCCC--------CCceEEEEcCceEEEEEeHHHHHHHHHHCHHH
Confidence 66 3221 56889999999999999999999999999883
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.33 E-value=1.3e-11 Score=118.73 Aligned_cols=188 Identities=16% Similarity=0.190 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHhhccceeccccccCCCcccCHHHHHHHhHH---HHHHHHHhcchhhhhheeeecCcccchhhhhh
Q 007545 86 LRTVLDSFQIVYVYIRAHTHVPVPDFINGRGFHTSKWTFAKKFFC---LLNGIVSVLPLPQAVIYLVVPKMRGHKFLSAM 162 (599)
Q Consensus 86 ~~~i~D~~f~~DI~l~F~tay~~~~~v~~~G~l~d~~~Ia~~Ylk---F~~Dlls~lPl~~i~~~~~~~~~~~~~~~~~~ 162 (599)
++.+.|++|.+|+++++++... + +++|++ .++|+++++|.......... ...+. .
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~--------------~--~~~y~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~---~ 59 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGF--------------K--RRRYFRSWWNWFDFISVIPSIVSVILRSY---GSASA---Q 59 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC--------------G---GCCCCSHHHHHHHHHHHHHCCHHCCHCS---S--HH---C
T ss_pred ChHHHHHHHHHHHHHHHHHhcc--------------H--HHHHhcChhhccccccccccccccccccc---ccccc---c
Confidence 6789999999999999997543 1 667887 67999999998654332111 11110 1
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcCCCCC
Q 007545 163 SLLKFVLVAQFLPRFVRMYQLFTKAASSSGAVH-GLASGIFHFLVYLLVSHSFGALWYFLAIVRVSVCWRQACLHAGCSS 241 (599)
Q Consensus 163 ~~lrl~~l~~~l~rl~ri~~l~~~~~~~~~~~~-~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~~~ 241 (599)
..+++.++++. .|++|+.+..+.+.+....+. ........+++++++.|..||+++.+.......|
T Consensus 60 ~~~~~~~~l~~-~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~------------ 126 (200)
T PF00520_consen 60 SLLRIFRLLRL-LRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSC------------ 126 (200)
T ss_dssp HCHHHHHHHHH-HHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------------
T ss_pred ceEEEEEeecc-ccccccccccccccccccccccccccccccccccccccccccchhheecccccccc------------
Confidence 22333333322 234444443333322211111 1112222334556688999999988873211110
Q ss_pred CcccccCCCccccccCCCCCCCCCCCccccchhhhccCcccccchhhHHHHHHHHHHHHhc-ccccccccc-----Cchh
Q 007545 242 HDSFYCDDDKSLNAFCPAKLRDPTSFDFGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTST-----DAWE 315 (599)
Q Consensus 242 ~~~~~~~~~sW~~~~~~~~~~~~~~f~~giy~~a~~~~~~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~~-----~~~E 315 (599)
|. ..+... ++ ....+..+.|..|+||+++++| .|+||+.+. +..|
T Consensus 127 -----~~-~~~~~~--------~~---------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 177 (200)
T PF00520_consen 127 -----CD-PTWDSE--------ND---------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLA 177 (200)
T ss_dssp ----------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTH
T ss_pred -----cc-cccccc--------cc---------------cccccccccccccccccccccccCCccccccccccccchhH
Confidence 00 000000 00 1133566789999999999999 999999887 8899
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHH
Q 007545 316 NIFS-SAMTITGAVFIPFHLWNV 337 (599)
Q Consensus 316 ~if~-i~~mi~G~~~fa~lIg~i 337 (599)
.++. +++.+.+.++++.+||.|
T Consensus 178 ~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 178 VIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999 666677778999999976
No 8
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.28 E-value=3.6e-11 Score=104.32 Aligned_cols=104 Identities=13% Similarity=0.364 Sum_probs=89.8
Q ss_pred cccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcce---eeeCCCCCeechhhhHhhhc
Q 007545 423 MLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSV---FTPRKDGEFCGEELVSWAVD 497 (599)
Q Consensus 423 lF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~---~~~l~~G~~fGE~~l~~~l~ 497 (599)
+|+.++++.+..++..+++..+.+|+.|+.+|++.+.+|+|.+| .+.+. ..+|. ...+.+|++||+..+ +.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G-~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~---~~ 76 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSG-SVEVYKLDEDGREQIVGFLGPGDLFGELAL---LG 76 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeC-EEEEEEECCCCcEEEEEecCCccCcChHHH---hc
Confidence 47889999999999999999999999999999999999999999 99998 33332 233899999999866 21
Q ss_pred cCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 498 QQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 498 ~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
.. ++..+++|.++|+++.++.++|..+.+++|+
T Consensus 77 ~~--------~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~ 109 (115)
T cd00038 77 NG--------PRSATVRALTDSELLVLPRSDFRRLLQEYPE 109 (115)
T ss_pred CC--------CCCceEEEcCceEEEEEeHHHHHHHHHHCcH
Confidence 11 4578899999999999999999999999976
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.26 E-value=1.5e-10 Score=113.41 Aligned_cols=104 Identities=16% Similarity=0.214 Sum_probs=89.3
Q ss_pred cCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceee---eCCCCCeechhhhHhhhccC
Q 007545 425 QRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFT---PRKDGEFCGEELVSWAVDQQ 499 (599)
Q Consensus 425 ~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~fGE~~l~~~l~~~ 499 (599)
+.+|++.++.++..++...|.+|++|+.+||+++.+|||.+| .++++ ..+|... .+++|++||+..+ +.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G-~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~---~~~- 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKG-SVAVLIKDEEGKEMILSYLNQGDFIGELGL---FEE- 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeC-EEEEEEECCCCCEEEEEEcCCCCEEeehhh---ccC-
Confidence 468999999999999999999999999999999999999999 99988 3344332 2899999999866 221
Q ss_pred CCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 500 SDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 500 ~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
.+++..+++|.++|+++.+++++|.++++++|+.
T Consensus 81 ------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~ 114 (211)
T PRK11753 81 ------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDI 114 (211)
T ss_pred ------CCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHH
Confidence 1245788999999999999999999999999773
No 10
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.19 E-value=1.7e-10 Score=100.52 Aligned_cols=106 Identities=15% Similarity=0.333 Sum_probs=89.3
Q ss_pred cccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEec--Ccce---eeeCCCCCeechhhhHhhhc
Q 007545 423 MLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWS--STSV---FTPRKDGEFCGEELVSWAVD 497 (599)
Q Consensus 423 lF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~--~~g~---~~~l~~G~~fGE~~l~~~l~ 497 (599)
+|.+++++.+++++..++...+.+|++|+++||+.+.+|||.+| .+++.. .+|. ...+.+|++||+..+ +.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G-~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~---~~ 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSG-EVRVYKVLEDGREQILGILGPGDFFGELAL---LT 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEee-EEEEEEECCCCceEEEEeecCCceechhhh---cc
Confidence 47899999999999999999999999999999999999999999 999882 2332 233899999999876 21
Q ss_pred cCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 498 QQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 498 ~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
... .++..+++|.++|++..++.+++......+|.
T Consensus 77 ~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 111 (120)
T smart00100 77 NSR------RAASATAVALELATLLRIDFRDFLQLLQENPQ 111 (120)
T ss_pred CCC------cccceEEEEEeeEEEEccCHHHHHHHHHHhHH
Confidence 111 14578899999999999999999999988866
No 11
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.18 E-value=6.1e-11 Score=99.24 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=72.6
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEe
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAV 516 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~ 516 (599)
+.|.+|++|+++|++++++|||.+| .+++. ..++.. ..+++|++||+..+ +..+ ++..+++|.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G-~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~---~~~~--------~~~~~~~a~ 69 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSG-EVKVSSINEDGKEQIIFFLGPGDIFGEIEL---LTGK--------PSPFTVIAL 69 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEES-EEEEEEETTTSEEEEEEEEETTEEESGHHH---HHTS--------BBSSEEEES
T ss_pred eEECCCCEEEeCCCcCCEEEEEEEC-ceEEEeceecceeeeecceeeeccccceee---cCCC--------ccEEEEEEc
Confidence 5789999999999999999999999 99999 334432 23899999999866 2211 568899999
Q ss_pred ceeeeeEechHhHHHHHHhCCc
Q 007545 517 TQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 517 ~~~el~~L~~~dl~~l~~~fp~ 538 (599)
++|+++.|++++|.++++++|+
T Consensus 70 ~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 70 TDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SSEEEEEEEHHHHHHHHHHSHH
T ss_pred cCEEEEEEeHHHHHHHHHhCcC
Confidence 9999999999999999999974
No 12
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.15 E-value=4.1e-11 Score=125.81 Aligned_cols=114 Identities=16% Similarity=0.314 Sum_probs=98.2
Q ss_pred cchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCc------ceeeeCCCCCe
Q 007545 413 LCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSST------SVFTPRKDGEF 486 (599)
Q Consensus 413 l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~------g~~~~l~~G~~ 486 (599)
-+.++|+.+|+|+++|++.+..++..++...|..|++|+++|+.++..|+|.+| .|.+...+ ..+.++..||+
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G-~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKG-TVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecc-eEEEeecCCCCCchhHHhhccccch
Confidence 357789999999999999999999999999999999999999999999999999 99998211 12344999999
Q ss_pred echhhhHhhhccCCCCCCCcCCCceEEEEece-eeeeEechHhHHHHHHhCCc
Q 007545 487 CGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQ-VDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 487 fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~-~el~~L~~~dl~~l~~~fp~ 538 (599)
|||-++. . -..|++++.|... +++++|+++.|..++..+.+
T Consensus 348 FGE~al~---~--------edvRtAniia~~~gv~cl~lDresF~~liG~l~~ 389 (732)
T KOG0614|consen 348 FGERALL---G--------EDVRTANIIAQAPGVECLTLDRESFKKLIGDLEE 389 (732)
T ss_pred hhHHHhh---c--------cCccchhhhccCCCceEEEecHHHHHHhcccHHH
Confidence 9999882 1 1267899999987 99999999999998876655
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.13 E-value=5.6e-10 Score=110.98 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=83.9
Q ss_pred CCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceee---eCCCCCeechhhhHhhhccCCC
Q 007545 427 MDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFT---PRKDGEFCGEELVSWAVDQQSD 501 (599)
Q Consensus 427 ~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~fGE~~l~~~l~~~~~ 501 (599)
+.+-|..+|....+.+.|++|+.|+.+||+++.+|||.+| .|+++ +.+|... .+.+|++|||..+ +.+
T Consensus 19 ~~~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G-~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~---~~~--- 91 (226)
T PRK10402 19 FKDCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRG-RAKLYATLANGKVSLIDFFAAPCFIGEIEL---IDK--- 91 (226)
T ss_pred hhhcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeC-EEEEEEECCCCCEeeeeecCCCCeEEeehh---hcC---
Confidence 3444555688888999999999999999999999999999 99998 4455433 3899999999866 222
Q ss_pred CCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 502 SSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 502 ~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
.+++.+++|+++|+++.++++++.+++.+.|.
T Consensus 92 -----~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~ 123 (226)
T PRK10402 92 -----DHETKAVQAIEECWCLALPMKDCRPLLLNDAL 123 (226)
T ss_pred -----CCCCccEEEeccEEEEEEEHHHHHHHHhcCHH
Confidence 25688999999999999999999999999987
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.12 E-value=1e-09 Score=106.85 Aligned_cols=114 Identities=20% Similarity=0.309 Sum_probs=93.4
Q ss_pred hcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeechhhh
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGEELV 492 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE~~l 492 (599)
+.+.+.|...++.....+....+...+++|++|+++||+++.+|+|.+| .++++ ..+|.. ..+++|++|||..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G-~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l 80 (214)
T COG0664 2 LKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSG-IVKLYANTEDGREIILGFLGPGDFFGELAL 80 (214)
T ss_pred cccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEe-EEEEEEECCCCcEEEEEEecCCchhhhHHH
Confidence 3456777778888888888999999999999999999999999999999 99999 334433 33899999999977
Q ss_pred HhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhchh
Q 007545 493 SWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQL 543 (599)
Q Consensus 493 ~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~l 543 (599)
+.. .++..+++|+++|+++.+++++|.+++.+.|.....+
T Consensus 81 ---~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l 120 (214)
T COG0664 81 ---LGG--------DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120 (214)
T ss_pred ---hcC--------CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHH
Confidence 221 1568899999999999999999999887766644443
No 15
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=7.4e-11 Score=119.04 Aligned_cols=110 Identities=13% Similarity=0.210 Sum_probs=96.9
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHh
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSW 494 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~ 494 (599)
.+.+++.-+|+++|++.+..+...|.+..+..|+.|+++||.++.+|+|.+| +++++.++..+..+++|..|||.+|.
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kG-t~dVyv~~~~v~~~~~g~sFGElALm- 198 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKG-TFDVYVNGTYVTTYSPGGSFGELALM- 198 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecc-eEEEEECCeEEeeeCCCCchhhhHhh-
Confidence 4567777899999999999999999999999999999999999999999999 99999665556669999999999983
Q ss_pred hhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhC
Q 007545 495 AVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQC 536 (599)
Q Consensus 495 ~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~f 536 (599)
..+|+.+|+.|.+++.+|.|++..|.+++-..
T Consensus 199 ----------yn~PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 199 ----------YNPPRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred ----------hCCCcccceeeccccceEEEeeceeEEEeecc
Confidence 23478999999999999999999887765433
No 16
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.11 E-value=9.2e-10 Score=109.91 Aligned_cols=111 Identities=13% Similarity=0.189 Sum_probs=90.8
Q ss_pred hcCCCcccCCCHHHHHHHHhhCce-ecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceeee---CCCCCeechhh
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNL-VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFTP---RKDGEFCGEEL 491 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~~---l~~G~~fGE~~ 491 (599)
+++.+.|..++++.++.|....+. ..|.+||.|+++||+++.+|+|.+| .|+++ +.+|.... +.+|++||+..
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G-~v~~~~~~~~G~e~i~~~~~~gd~~g~~~ 93 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSG-TIKSYTITEQGDEQITGFHLAGDLVGFDA 93 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeec-eEEEEEECCCCCEEEEEeccCCceecccc
Confidence 555565557999999999988865 5799999999999999999999999 99998 44454433 79999999875
Q ss_pred hHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhc
Q 007545 492 VSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDG 541 (599)
Q Consensus 492 l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~ 541 (599)
+ +.. ....+++|+++++++.+++++|++++.++|+...
T Consensus 94 ~---~~~---------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~ 131 (235)
T PRK11161 94 I---GSG---------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQ 131 (235)
T ss_pred c---cCC---------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHH
Confidence 5 211 2245789999999999999999999999998433
No 17
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.1e-09 Score=115.44 Aligned_cols=45 Identities=9% Similarity=0.225 Sum_probs=41.2
Q ss_pred HHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 007545 292 YCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWN 336 (599)
Q Consensus 292 ~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~ 336 (599)
.|+|||+.||| |||||.+|.|..-++++....+.|+++.|+=|.-
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPIti 425 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITI 425 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHh
Confidence 58999999999 9999999999999999999999999999874433
No 18
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.07 E-value=7.3e-10 Score=120.02 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=94.1
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee--eeCCCCCeechh
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF--TPRKDGEFCGEE 490 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~--~~l~~G~~fGE~ 490 (599)
.+.++++|+|++++++.++.++..++.+.|.+||+|+++||.++.+|+|.+| .|+++ ..+|.. ..+++|++|||.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G-~V~v~~~~~~ge~~l~~l~~Gd~fG~~ 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKG-EAEVSGPAEEESRPEFLLKRYDYFGYG 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeC-EEEEEEECCCCcEEEEEeCCCCEeehh
Confidence 3567899999999999999999999999999999999999999999999999 99998 333322 238999999975
Q ss_pred hhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 491 LVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 491 ~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+ ... ++..+++|.++|+++.|++++|..+....+.
T Consensus 86 -l------~~~------~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~ 120 (413)
T PLN02868 86 -L------SGS------VHSADVVAVSELTCLVLPHEHCHLLSPKSIW 120 (413)
T ss_pred -h------CCC------CcccEEEECCCEEEEEEcHHHHhhhcccccc
Confidence 4 111 5688999999999999999999998876654
No 19
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.01 E-value=4.4e-09 Score=112.32 Aligned_cols=113 Identities=13% Similarity=0.229 Sum_probs=99.6
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcce-eeeCCCCCeechhhhH
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSV-FTPRKDGEFCGEELVS 493 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~-~~~l~~G~~fGE~~l~ 493 (599)
.+++.++|+|+.++++.+.+|...+....|.+||.|...|.+.+.+|+|.+| .|++...+|. +..+.+||.||-..+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG-~vev~~~~g~v~~~~~~gdlFg~~~l- 83 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKG-VVEVRSDGGEVLDRLAAGDLFGFSSL- 83 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEec-eeeEEcCCCeeeeeeccCccccchhh-
Confidence 4678999999999999999999999999999999999999999999999999 9999977776 455999999998877
Q ss_pred hhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 494 WAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 494 ~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
++.. .......|.+++-+|.|+++.|.++..++|+.
T Consensus 84 --~~~~--------~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f 119 (610)
T COG2905 84 --FTEL--------NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEF 119 (610)
T ss_pred --cccC--------CCcceeEeeccceEEecCHHHHHHHHHhCcHH
Confidence 2211 22456788889999999999999999999873
No 20
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.01 E-value=2.4e-10 Score=120.17 Aligned_cols=114 Identities=18% Similarity=0.321 Sum_probs=100.2
Q ss_pred hhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechh
Q 007545 411 HELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEE 490 (599)
Q Consensus 411 ~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~ 490 (599)
..+-++.+.+..|+++++...+.+++..|.+..|.+|..|++|||+++++|.+.+| ++++......+.++++|..|||.
T Consensus 149 k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG-~~~V~~~g~ll~~m~~gtvFGEL 227 (732)
T KOG0614|consen 149 KQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEG-ELQVSREGKLLGKMGAGTVFGEL 227 (732)
T ss_pred HHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecc-eEEEeeCCeeeeccCCchhhhHH
Confidence 34456778888899999999999999999999999999999999999999999999 99998655556669999999999
Q ss_pred hhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhC
Q 007545 491 LVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQC 536 (599)
Q Consensus 491 ~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~f 536 (599)
++++. . .|++||+|+++|.+++|+++-|+.+...-
T Consensus 228 AILyn-----c------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 228 AILYN-----C------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred HHHhC-----C------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 88431 1 67999999999999999999999987654
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.90 E-value=1.1e-08 Score=98.70 Aligned_cols=85 Identities=11% Similarity=0.127 Sum_probs=69.1
Q ss_pred CcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceee---eCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeee
Q 007545 447 GMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFT---PRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDA 521 (599)
Q Consensus 447 ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el 521 (599)
|+.|+++||+++.+|+|.+| .|+++ ..+|... .+++|++||+..+ +.+... ++..+++|+++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G-~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~---~~~~~~------~~~~~~~A~~~~~v 70 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRG-AVKLSRVYESGEEITVALLRENSVFGVLSL---ITGHRS------DRFYHAVAFTRVEL 70 (193)
T ss_pred CCceecCCCCCCcEEEEEec-EEEEEEeCCCCcEeeeEEccCCCEeeeeee---ccCCCC------ccceEEEEecceEE
Confidence 78999999999999999999 99988 4455443 3899999999866 322211 33577999999999
Q ss_pred eEechHhHHHHHHhCCchhc
Q 007545 522 FSIEAGDLKEFVNQCRQPDG 541 (599)
Q Consensus 522 ~~L~~~dl~~l~~~fp~~~~ 541 (599)
+.+++++|++++.++|+...
T Consensus 71 ~~i~~~~~~~l~~~~p~l~~ 90 (193)
T TIGR03697 71 LAVPIEQVEKAIEEDPDLSM 90 (193)
T ss_pred EEeeHHHHHHHHHHChHHHH
Confidence 99999999999999998433
No 22
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.89 E-value=1.2e-08 Score=83.98 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQ 342 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~ 342 (599)
.|..|+||+++|+| +||||+.|++..+++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999 9999999999999999999999999999999999998875
No 23
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.82 E-value=3e-08 Score=98.82 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=76.8
Q ss_pred HHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceeee---CCCCCeechhhhHhhhccCCCCCCCcC
Q 007545 433 NAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFTP---RKDGEFCGEELVSWAVDQQSDSSTVFP 507 (599)
Q Consensus 433 ~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~~---l~~G~~fGE~~l~~~l~~~~~~~~~~~ 507 (599)
.+++...+...|.+|++|+.+||+++.+|||.+| .|+++ ..+|.... +.+|++||+... .
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G-~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~------~-------- 96 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESG-AVRTYRLLSDGRRQIGAFHLPGDVFGLESG------S-------- 96 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeC-EEEEEEECCCCcEEEEEEecCCceecccCC------C--------
Confidence 4566777889999999999999999999999999 99988 44554322 799999996421 1
Q ss_pred CCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 508 RSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 508 ~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
++..+++|+++|+++.+++++|+.++.+.|+
T Consensus 97 ~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~ 127 (230)
T PRK09391 97 THRFTAEAIVDTTVRLIKRRSLEQAAATDVD 127 (230)
T ss_pred cCCeEEEEcCceEEEEEEHHHHHHHHhhChH
Confidence 3468999999999999999999999999988
No 24
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=4.4e-09 Score=106.37 Aligned_cols=118 Identities=17% Similarity=0.319 Sum_probs=104.4
Q ss_pred HHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCcceeeeCCCCCee
Q 007545 409 MKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTSVFTPRKDGEFC 487 (599)
Q Consensus 409 i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g~~~~l~~G~~f 487 (599)
.++.+|.+.|+++|+++.++......++..+.+..|.+|+.|..+|++++++|+|.+| +|.+. .++|+...++.|++|
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eG-Evdv~~~~~~v~vkl~~~dyf 311 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEG-EVDVLKKRDGVEVKLKKGDYF 311 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEeccc-ccchhhccCCeEEEechhhhc
Confidence 3467889999999999999999999999999999999999999999999999999999 99988 445555579999999
Q ss_pred chhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 488 GEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 488 GE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
||.++. . .. ++.+||.|.+...+..++++.|+.++....+
T Consensus 312 ge~al~---~--~~------pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 312 GELALL---K--NL------PRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred chHHHH---h--hc------hhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 999873 1 11 6789999999999999999999999987744
No 25
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.79 E-value=4.4e-09 Score=105.88 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=38.7
Q ss_pred HHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHH
Q 007545 292 YCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFH 333 (599)
Q Consensus 292 ~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~l 333 (599)
.++|||++||| |||||..|.+..-+++..++.+.|++-.|.=
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALP 438 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALP 438 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccc
Confidence 48999999999 9999999999999999999999999877763
No 26
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.75 E-value=6.7e-08 Score=94.01 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=65.1
Q ss_pred hCceecccCCcEEEcCCC--CCCeEEEEEEcCeEEEe--cCcceeee---CCCCCeechhhhHhhhccCCCCCCCcCCCc
Q 007545 438 HFNLVPYTQGMFLVQEGN--PVNKLQLIVVGGDTLSW--SSTSVFTP---RKDGEFCGEELVSWAVDQQSDSSTVFPRST 510 (599)
Q Consensus 438 ~l~~~~~~~ge~I~~~Gd--~~~~myfI~~G~~v~i~--~~~g~~~~---l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~ 510 (599)
..++..|.+|++|+++|| +++.+|+|.+| .|+++ ..+|.... +.+|++|||..+ .. + +++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G-~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~---~~-~--------~~~ 71 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSG-LVRLHTVDDEGNALTLRYVRPGEYFGEEAL---AG-A--------ERA 71 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEee-EEEEEEECCCCCEEEEEEecCCCeechHHh---cC-C--------CCC
Confidence 457788999999999999 77999999999 99998 44554433 799999999755 11 1 446
Q ss_pred eEEEEeceeeeeEechHhH
Q 007545 511 RTVEAVTQVDAFSIEAGDL 529 (599)
Q Consensus 511 ~tv~A~~~~el~~L~~~dl 529 (599)
.+++|+++|+++.++++++
T Consensus 72 ~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 72 YFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred ceEEEcCceEEEEEEHHHc
Confidence 7899999999999999876
No 27
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2e-07 Score=99.10 Aligned_cols=88 Identities=11% Similarity=0.156 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHH
Q 007545 286 FLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMW 364 (599)
Q Consensus 286 ~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~ 364 (599)
-+.-|-.|+||++.|+| +||||.+|++..-++.+.+..++|..+||.--|.+++=+.-.- +++.++ +++
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~RQ--------KHf 335 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHRQ--------KHF 335 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHHH--------HHH
Confidence 45679999999999999 9999999999999999999999999999997777666443211 112222 356
Q ss_pred HHhCCCCHHHHHHHHHHHH
Q 007545 365 RLFHVLSDNLKQKIRKYCQ 383 (599)
Q Consensus 365 m~~~~lp~~L~~rVr~y~~ 383 (599)
-+.++.-.+|-+-.-+||.
T Consensus 336 ~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 336 NRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 6778888888888888775
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.83 E-value=2.7e-05 Score=83.06 Aligned_cols=66 Identities=6% Similarity=0.093 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH
Q 007545 287 LQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKI 352 (599)
Q Consensus 287 ~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~ 352 (599)
.--|-.|.|+-+.||+ |||||+..++..-++|.+|..+.|+.+||--+-.|.+++.+-.+-.-+|+
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk 352 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYK 352 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceee
Confidence 3468899999999999 99999999999999999999999999999999999888876554443443
No 29
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.82 E-value=0.0033 Score=66.48 Aligned_cols=89 Identities=10% Similarity=0.002 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHHH
Q 007545 287 LQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMWR 365 (599)
Q Consensus 287 ~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~m 365 (599)
..-|+.|+|.-..|.- +||||+.|.|..-+..+++.-++|++.-|.+|+-|+-=+ |...- -+.+++||
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~a---EKhVhNFM 353 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKA---EKHVHNFM 353 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHH---HHHHHHHH
Confidence 4568889998888888 999999999999999999999999999999998876432 33333 34566677
Q ss_pred HhCCCCHHHHHHHHHHHHHHh
Q 007545 366 LFHVLSDNLKQKIRKYCQSVF 386 (599)
Q Consensus 366 ~~~~lp~~L~~rVr~y~~y~w 386 (599)
-+.++-++++.-..+=++..|
T Consensus 354 mDtqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 354 MDTQLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555555555
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.79 E-value=4e-05 Score=82.07 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFL 341 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il 341 (599)
.+..|+||++.|+| +||||+.|.+...++|+++++++|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999 999999999999999999999999999999999887643
No 31
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.71 E-value=5.4e-06 Score=84.62 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=45.2
Q ss_pred HHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 007545 292 YCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPF----HLWNVMQFLQ 342 (599)
Q Consensus 292 ~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~----lIg~i~~il~ 342 (599)
.++|+.+.||| .||||..|.+..-++|..++.+.|+++.|. +++|++.|..
T Consensus 359 aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 359 AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 58899999999 999999999999999999999999998875 6677776653
No 32
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.58 E-value=7.1e-05 Score=83.98 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=82.4
Q ss_pred HHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecC--cc---eeeeCCCCCeechhhhHhhhccCCCCCC
Q 007545 430 QRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSS--TS---VFTPRKDGEFCGEELVSWAVDQQSDSST 504 (599)
Q Consensus 430 ~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~--~g---~~~~l~~G~~fGE~~l~~~l~~~~~~~~ 504 (599)
.++..+-..+.-....||+.++++||.+|++|+|..| .++...+ .| ....++.||.+|+... +..+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~G-RlRsv~~~~~~k~~i~~EygrGd~iG~~E~---lt~~----- 569 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNG-RLRSVIRQSGGKKEIVGEYGRGDLIGEVEM---LTKQ----- 569 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecC-eehhhhhccCccchhhhhccCcceeehhHH---hhcC-----
Confidence 3666777777888999999999999999999999999 9998822 12 2233899999998744 2212
Q ss_pred CcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhchh
Q 007545 505 VFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQL 543 (599)
Q Consensus 505 ~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~l 543 (599)
++..|+.|+.++|+..|+..-|..+..+||....++
T Consensus 570 ---~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl 605 (1158)
T KOG2968|consen 570 ---PRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRL 605 (1158)
T ss_pred ---CccceEEEEeehhhhhccHHHHHHHHHhccHHHHHH
Confidence 567899999999999999999999999999944443
No 33
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.48 E-value=0.00011 Score=59.43 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=30.7
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHhhccee
Q 007545 27 SAPRNSPSSSRSFDNWNLIFVAACWLSISLDGSF 60 (599)
Q Consensus 27 ~~~~ii~P~s~~~~~Wd~~~~~~~~~~~~v~Pl~ 60 (599)
....+|||.|+|+.+||.++++++++++++.|+.
T Consensus 34 ~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~ 67 (77)
T PF08412_consen 34 SGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFR 67 (77)
T ss_pred CCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3446999999999999999999999999999975
No 34
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.06 E-value=0.003 Score=66.22 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHhc-ccccc--ccccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 288 QKFLYCFQWGIRSLS-FAQNF--QTSTDAWENIFSSAMTITGAVFIPFHLWNVMQ 339 (599)
Q Consensus 288 ~~Yl~slYwa~~Tmt-vGyGd--i~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~ 339 (599)
..+..+|++++.|+| +|||. ++|....=.+.+++-+++|.++.|+++|-+-.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfa 137 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFA 137 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999 99998 56766666677778899999999999997644
No 35
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.03 E-value=0.0099 Score=57.58 Aligned_cols=109 Identities=8% Similarity=0.010 Sum_probs=80.0
Q ss_pred HHHHHHHhhCceecccCCcEE-EcCCCCCCeEEEEEEcCeEEEecCcceee-eCCCCCeechhhhHhhhccCCCCCCCcC
Q 007545 430 QRMNAILYHFNLVPYTQGMFL-VQEGNPVNKLQLIVVGGDTLSWSSTSVFT-PRKDGEFCGEELVSWAVDQQSDSSTVFP 507 (599)
Q Consensus 430 ~~l~~L~~~l~~~~~~~ge~I-~~~Gd~~~~myfI~~G~~v~i~~~~g~~~-~l~~G~~fGE~~l~~~l~~~~~~~~~~~ 507 (599)
..++++...-++..+.+|..+ ..+.+..+..+++.+| .|.+...++... +..+-..||=... +.++
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G-~vsirr~d~ll~~t~~aP~IlGl~~~---~~~~-------- 80 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEG-VISLRREENVLIGITQAPYIMGLADG---LMKN-------- 80 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEec-eEEEEecCCeEEEeccCCeEeecccc---cCCC--------
Confidence 356677777788899999997 5444444678999999 999974455333 3677778884322 2211
Q ss_pred CCceEEEEeceeeeeEechHhHHHHHHhCCchhchhhHHhhccchhhhhHHHHHHHHH
Q 007545 508 RSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQLPKCFRYGSEKWRNWAAVIIQQA 565 (599)
Q Consensus 508 ~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~l~~~~r~~~~~~~~~~~~~~q~~ 565 (599)
.....++|.++|+++.++.+++.+++++. +=|+.++..+++..
T Consensus 81 ~~~~~l~ae~~c~~~~i~~~~~~~iie~~---------------~LW~~~~~~l~~~~ 123 (207)
T PRK11832 81 DIPYKLISEGNCTGYHLPAKQTITLIEQN---------------QLWRDAFYWLAWQN 123 (207)
T ss_pred CceEEEEEcCccEEEEeeHHHHHHHHHHh---------------chHHHHHHHHHHHH
Confidence 22467999999999999999999999999 78888888776653
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0015 Score=70.55 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHIN 345 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~ 345 (599)
-+..|+|++.+++| +|||++.|.+...++++|+..++|.-++..++++++..+...-
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35679999999999 9999999999999999999999999999999999999886544
No 37
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.41 E-value=0.0098 Score=67.48 Aligned_cols=100 Identities=11% Similarity=0.158 Sum_probs=77.1
Q ss_pred HHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeechh-hhHhhhccCCCCCCCcC
Q 007545 434 AILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGEE-LVSWAVDQQSDSSTVFP 507 (599)
Q Consensus 434 ~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE~-~l~~~l~~~~~~~~~~~ 507 (599)
+++.+++...+..||+|++.|++.+.+|.+.+| .+++. +.+|.+ ++..+|+-|-.. .+ |+-.+..++ +
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg-~l~v~~~~~~g~~~llk~V~~G~~~tSllSi---Ld~l~~~ps--~ 183 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISG-ELTVHIRNGDGKEYLLKTVPPGGSFTSLLSI---LDSLPGFPS--L 183 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEecc-ceEEEecCCCCceeeEeeccCCCchHhHHHH---HHhccCCCc--c
Confidence 444888889999999999999999999999999 99988 334433 448899877654 33 222221111 2
Q ss_pred CCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 508 RSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 508 ~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
.++-.++|.++|.+-.++...|..+..+||+.
T Consensus 184 ~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s 215 (1158)
T KOG2968|consen 184 SRTIAAKAATDCTVARIPYTSFRESFHKNPES 215 (1158)
T ss_pred cceeeeeeecCceEEEeccchhhhhhccChHH
Confidence 44667899999999999999999999999983
No 38
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.94 E-value=0.043 Score=60.39 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=88.4
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecc-cCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhH
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPY-TQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVS 493 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~-~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~ 493 (599)
.+++.+.|-|.+++-..-+++|..|...+. ..|.+|+..|+.-|.-+.|+.| +||+...+|....+.-|+-||-+.-
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG-~VEv~~PdGk~e~l~mGnSFG~~PT- 357 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNG-CVEVVKPDGKREELKMGNSFGAEPT- 357 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecc-eEEEecCCCceEEeecccccCCCCC-
Confidence 567888899999999999999999977665 5699999999999999999999 9999988887777999999996522
Q ss_pred hhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 494 WAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 494 ~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
.+.+- .... .+ .-+.+|+...+...|+-.+++.-..
T Consensus 358 --~dkqy---m~G~--mR--TkVDDCqFVciaqqDycrIln~vek 393 (1283)
T KOG3542|consen 358 --PDKQY---MIGE--MR--TKVDDCQFVCIAQQDYCRILNTVEK 393 (1283)
T ss_pred --cchhh---hhhh--hh--eecccceEEEeehhhHHHHHHHHHh
Confidence 11000 0000 11 2357899999999999998876543
No 39
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.84 E-value=1.2 Score=51.65 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 007545 84 VVLRTVLDSFQIVYVYIRA 102 (599)
Q Consensus 84 ~~~~~i~D~~f~~DI~l~F 102 (599)
++=|+|+-++|++.+.++-
T Consensus 1159 tlsnyIFtaIfV~Em~lKV 1177 (1956)
T KOG2302|consen 1159 TLSNYIFTAIFVVEMTLKV 1177 (1956)
T ss_pred EecchHHHHHHHHHHHHHH
Confidence 3346788899999998874
No 40
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=94.80 E-value=0.64 Score=42.57 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHhh-CceecccCCcEEEcCC-CCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCCCC
Q 007545 426 RMDEQRMNAILYH-FNLVPYTQGMFLVQEG-NPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSS 503 (599)
Q Consensus 426 ~~~~~~l~~L~~~-l~~~~~~~ge~I~~~G-d~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~ 503 (599)
+.+.+..+.|+.. .+.....+|+.-.-|| .+.|.+-++++| .+.+..++...+.+.+-+|...-..- .+.++
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsG-r~~Vs~~g~fLH~I~p~qFlDSPEW~-s~~~s---- 87 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSG-RMRVSCDGRFLHYIYPYQFLDSPEWE-SLRPS---- 87 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcC-cEEEEECCEeeEeecccccccChhhh-ccccC----
Confidence 5677777777777 6667789999887777 457899999999 99998665566656666665432110 01111
Q ss_pred CCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 504 TVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 504 ~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
....-..|+.|.++|.....+|+.|+.++.+-|..
T Consensus 88 -~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L 122 (153)
T PF04831_consen 88 -EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFL 122 (153)
T ss_pred -CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHH
Confidence 11123579999999999999999999999998553
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=92.09 E-value=0.045 Score=55.69 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQ 339 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~ 339 (599)
++.-|||||.+.+| +|||-.+|.|..-++|+|+..++|+-+--....++++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 56679999999999 9999999999999999999999997665554444443
No 42
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=91.40 E-value=0.69 Score=48.44 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhc-cccccc--cccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQ--TSTDAWENIFSSAMTITGAVFIPFHLWNVMQ 339 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi--~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~ 339 (599)
-...+|-|++-|=| +|||-- +..-..-++..++-+++|+++=|+++|.|-.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~a 165 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFA 165 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888 999963 4444444555566789999999999998643
No 43
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=90.83 E-value=0.27 Score=50.22 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhc-ccccccccc-------Cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTST-------DAWEN-IFSSAMTITGAVFIPFHLWNVMQFLQHIN 345 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~-------~~~E~-if~i~~mi~G~~~fa~lIg~i~~il~~~~ 345 (599)
.|+.|+|+.+.|+| +|+||.++. +..++ .++.+.+++|+.+++-+++-+.--+..++
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48889999999999 999998763 33444 45556788899988887777655444433
No 44
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=89.91 E-value=0.085 Score=56.87 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhc-cccccccccCchhh--------HHHHHHHHHHHHHHHHHH
Q 007545 288 QKFLYCFQWGIRSLS-FAQNFQTSTDAWEN--------IFSSAMTITGAVFIPFHL 334 (599)
Q Consensus 288 ~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~--------if~i~~mi~G~~~fa~lI 334 (599)
--|+.|+|++++|+| +|+||+.|.+...+ .+..+..++|...++...
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 358889999999999 99999999998755 577788888888888776
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=88.54 E-value=1.9 Score=46.84 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHH
Q 007545 291 LYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIP 331 (599)
Q Consensus 291 l~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa 331 (599)
+.|+|+.+.|.+ |||||-.|....-.++.++++.+.+++..
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip 260 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIP 260 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccH
Confidence 357899999999 99999999888877776665555555433
No 46
>PLN03223 Polycystin cation channel protein; Provisional
Probab=87.54 E-value=27 Score=42.80 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007545 316 NIFSSAMTITGAVFIPFHLWNVMQFLQHI 344 (599)
Q Consensus 316 ~if~i~~mi~G~~~fa~lIg~i~~il~~~ 344 (599)
..|..+++++..++.-++|+-|..-++..
T Consensus 1397 IYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1397 IYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666666665555544
No 47
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=86.74 E-value=2.9 Score=39.83 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc--cCCCCHHHHHhhC--ChhHHHHHHhhc
Q 007545 358 MQEVEMWRLFHVLSDNLKQKIRKYCQSVFQG--TEGFNLHQFFNDL--PPELSFAMKHEL 413 (599)
Q Consensus 358 ~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~--~~~~~e~~ll~~L--p~~Lr~~i~~~l 413 (599)
+++++.+++ ++|++-++++.+||+-+..+ .+|.+|++++++| |.++-+++..+.
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 777889997 59999999999999988875 4678999999997 777878877654
No 48
>COG4709 Predicted membrane protein [Function unknown]
Probab=82.57 E-value=5.6 Score=37.76 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc--cCCCCHHHHHhhC--ChhHHHHHHhhcchhhhcCCCcccCCCHHHHH
Q 007545 358 MQEVEMWRLFHVLSDNLKQKIRKYCQSVFQG--TEGFNLHQFFNDL--PPELSFAMKHELCLPVLKEVPMLQRMDEQRMN 433 (599)
Q Consensus 358 ~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~--~~~~~e~~ll~~L--p~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~ 433 (599)
++++++|++ .+|++.++.+..||+-++.+ ..|.+|+++..+| |.++-.|+....-.+-.+.-|-+++.+...+.
T Consensus 7 L~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~aii~ 84 (195)
T COG4709 7 LNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAIIA 84 (195)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHHHH
Confidence 677888875 69999999999999887764 3588999999998 77888888887766666666666665554333
No 49
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.48 E-value=69 Score=37.18 Aligned_cols=76 Identities=9% Similarity=0.146 Sum_probs=56.7
Q ss_pred hccccccccccCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcH-HHHHHhhHhHHHHHHHHHhCCCCHH
Q 007545 301 LSFAQNFQTSTDA------WENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNS-ERKIRKSSQMQEVEMWRLFHVLSDN 373 (599)
Q Consensus 301 mtvGyGdi~~~~~------~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~-~~~~~k~~~~~~i~~~m~~~~lp~~ 373 (599)
.|+|+||-..... .-.+|.+++.++.++++-.+|+-|++...+..... ++++.+ . ..---|-++.+|+.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q---~-A~~iL~lErs~p~~ 676 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQ---W-AATILMLERSLPPA 676 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHH---H-HHHHHHHHhcCCHH
Confidence 3489998765433 24667777888888999999999999988877666 677766 3 33446778999999
Q ss_pred HHHHHHH
Q 007545 374 LKQKIRK 380 (599)
Q Consensus 374 L~~rVr~ 380 (599)
++.|-+.
T Consensus 677 ~r~~~~~ 683 (782)
T KOG3676|consen 677 LRKRFRL 683 (782)
T ss_pred HHHHHhh
Confidence 9988443
No 50
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=73.73 E-value=4.3 Score=31.58 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=32.2
Q ss_pred ecccCCcEEEcCCCCCC-eEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQEGNPVN-KLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~-~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..++||+..-..-.+.. ++++|++| ++++.. +|....+++||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G-~~~~~~-~~~~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSG-EGTLTV-DGERVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEES-EEEEEE-TTEEEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEEC-CEEEEE-ccEEeEccCCEEE
Confidence 45788887655555555 99999999 999883 3445558998865
No 51
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=73.41 E-value=4.3 Score=32.59 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=30.9
Q ss_pred cCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 445 TQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 445 ~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
.||..-..-. .++..+|++| .+.+...+|....+++||.|
T Consensus 15 ~pg~~~~~~~--~~E~~~vleG-~v~it~~~G~~~~~~aGD~~ 54 (74)
T PF05899_consen 15 TPGKFPWPYP--EDEFFYVLEG-EVTITDEDGETVTFKAGDAF 54 (74)
T ss_dssp ECEEEEEEES--SEEEEEEEEE-EEEEEETTTEEEEEETTEEE
T ss_pred CCceeEeeCC--CCEEEEEEEe-EEEEEECCCCEEEEcCCcEE
Confidence 4555443332 2889999999 99999888888789999987
No 52
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=71.07 E-value=9.4 Score=33.17 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHhcc----------cCCCCHHHHHhhCChhHHHHHHhhc
Q 007545 369 VLSDNLKQKIRKYCQSVFQG----------TEGFNLHQFFNDLPPELSFAMKHEL 413 (599)
Q Consensus 369 ~lp~~L~~rVr~y~~y~w~~----------~~~~~e~~ll~~Lp~~Lr~~i~~~l 413 (599)
-||+++|..|..++.-.-.. ....|...+|..||+.||++|....
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~~ 106 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLDM 106 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhcc
Confidence 48999999999998764321 2235677899999999999997643
No 53
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=70.59 E-value=5.7 Score=23.48 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007545 558 AAVIIQQAWCRQRKKKF 574 (599)
Q Consensus 558 ~~~~~q~~~~~~~~r~~ 574 (599)
+++.||..||.+..||.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67899999999998875
No 54
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=67.19 E-value=7.8 Score=26.30 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhh
Q 007545 555 RNWAAVIIQQAWCRQRKKKFQTS 577 (599)
Q Consensus 555 ~~~~~~~~q~~~~~~~~r~~~~~ 577 (599)
+-+|+.+||.-|++.++||..+.
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~~~ 30 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQEQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998764
No 55
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.23 E-value=47 Score=42.15 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=24.5
Q ss_pred cccccccccCchhhHHHHHHHHHHHHHH-----HHHHHHHHH
Q 007545 303 FAQNFQTSTDAWENIFSSAMTITGAVFI-----PFHLWNVMQ 339 (599)
Q Consensus 303 vGyGdi~~~~~~E~if~i~~mi~G~~~f-----a~lIg~i~~ 339 (599)
++-|.+...+....+|-++..++|..+. |++|.|.+.
T Consensus 1065 ~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~ 1106 (1592)
T KOG2301|consen 1065 VNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQ 1106 (1592)
T ss_pred cCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhh
Confidence 6667777777777777777777776654 455555543
No 56
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=64.92 E-value=7.7 Score=43.47 Aligned_cols=89 Identities=9% Similarity=0.092 Sum_probs=65.2
Q ss_pred hhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhh
Q 007545 417 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAV 496 (599)
Q Consensus 417 ~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l 496 (599)
.+.+...|.++-..-++++|...+...++-..++++.||.+..-|++++| .|-+.+. .+.+-..||...-
T Consensus 38 ~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsg-sv~v~gq-----i~mp~~~fgkr~g---- 107 (1283)
T KOG3542|consen 38 QLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSG-SVFVEGQ-----IYMPYGCFGKRTG---- 107 (1283)
T ss_pred HHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeecc-ceEeecc-----eecCccccccccc----
Confidence 56677788888899999999999999999999999999999999999999 7766421 1333334553311
Q ss_pred ccCCCCCCCcCCCceEEEEeceeeeeEec
Q 007545 497 DQQSDSSTVFPRSTRTVEAVTQVDAFSIE 525 (599)
Q Consensus 497 ~~~~~~~~~~~~s~~tv~A~~~~el~~L~ 525 (599)
..++.+.-.+.++|+.+++
T Consensus 108 ----------~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 108 ----------QNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred ----------cccccceeeecccceeeee
Confidence 1345556666677777664
No 57
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=58.36 E-value=21 Score=33.25 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=28.8
Q ss_pred ceecc-cCCcEE-EcCCCCCCeEEEEEEcCeEEEe-cCcce--eeeCCCCCee
Q 007545 440 NLVPY-TQGMFL-VQEGNPVNKLQLIVVGGDTLSW-SSTSV--FTPRKDGEFC 487 (599)
Q Consensus 440 ~~~~~-~~ge~I-~~~Gd~~~~myfI~~G~~v~i~-~~~g~--~~~l~~G~~f 487 (599)
+...+ .||.-- +... ..+++|++++| .+.+. ..+|. ...+++||+|
T Consensus 30 ~v~~vgGpn~R~d~H~~-~tdE~FyqleG-~~~l~v~d~g~~~~v~L~eGd~f 80 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDD-PGEEFFYQLKG-EMYLKVTEEGKREDVPIREGDIF 80 (159)
T ss_pred EEEEeCCCCCCcccccC-CCceEEEEEcc-eEEEEEEcCCcEEEEEECCCCEE
Confidence 33344 444433 4443 37899999999 98886 22232 2339999987
No 58
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=51.15 E-value=22 Score=22.16 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 007545 556 NWAAVIIQQAWCRQRKKKFQ 575 (599)
Q Consensus 556 ~~~~~~~q~~~~~~~~r~~~ 575 (599)
+-++..||+.||.+..|+.-
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34788999999999988753
No 59
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=45.65 E-value=86 Score=30.35 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHhhCceec--ccCCcEEEcCCCCCC
Q 007545 426 RMDEQRMNAILYHFNLVP--YTQGMFLVQEGNPVN 458 (599)
Q Consensus 426 ~~~~~~l~~L~~~l~~~~--~~~ge~I~~~Gd~~~ 458 (599)
..++....+......|.. +.+||.|+++|+..+
T Consensus 173 ~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 173 EATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 456778888899999998 999999999999865
No 60
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=44.84 E-value=40 Score=30.09 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=32.0
Q ss_pred ceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCcceeeeCCCCCeec
Q 007545 440 NLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTSVFTPRKDGEFCG 488 (599)
Q Consensus 440 ~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g~~~~l~~G~~fG 488 (599)
....+.||..+-.--....++++|++| ++++. ..+|....+.+||.+-
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G-~~~~~~i~~g~~~~L~aGD~i~ 86 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEG-EGEVEDLATGEVHPIRPGTMYA 86 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeC-EEEEEEcCCCEEEEeCCCeEEE
Confidence 334667886543221122479999999 99987 4346666799999874
No 61
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=40.89 E-value=42 Score=29.77 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=38.3
Q ss_pred CceecccCCcEEEcCCCC-CCeEEEEEEcCeEEEecCcceeeeCCCCCeechh
Q 007545 439 FNLVPYTQGMFLVQEGNP-VNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEE 490 (599)
Q Consensus 439 l~~~~~~~ge~I~~~Gd~-~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~ 490 (599)
+....+.||..+-.---+ .+...+|++| ++++..+ |....+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G-~~~~~~~-g~~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEG-EGTVQLE-GEKKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEec-EEEEEec-CCceEecCCCEEEEC
Confidence 345667888888766665 7799999999 9998854 666669999988643
No 62
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=39.79 E-value=60 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 007545 358 MQEVEMWRLFHVLS-----DNLKQKIRKYC 382 (599)
Q Consensus 358 ~~~i~~~m~~~~lp-----~~L~~rVr~y~ 382 (599)
..++.++++.+++| .+|.+|+.+|+
T Consensus 6 v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 6 VAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 67889999999998 68999998875
No 63
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=37.46 E-value=1.5e+02 Score=22.62 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcHH---HHHHhhHhHHHHHHHHH
Q 007545 321 AMTITGAVFIPFHLWNVMQFLQHINGNSE---RKIRKSSQMQEVEMWRL 366 (599)
Q Consensus 321 ~~mi~G~~~fa~lIg~i~~il~~~~~~~~---~~~~k~~~~~~i~~~m~ 366 (599)
.+.+++.+.|+.+ |-.++++.+.+++ ++.+| ++.+-+.+.
T Consensus 14 ~l~vl~~~~Ftl~---IRri~~~s~~kkq~~~~~eqK---LDrIIeLLE 56 (58)
T PF13314_consen 14 ILIVLFGASFTLF---IRRILINSNAKKQDVDSMEQK---LDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHH---HHHHHHhccccccchhHHHHH---HHHHHHHHc
Confidence 3444455555543 4445555444443 47777 887776554
No 64
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=36.00 E-value=59 Score=30.89 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=28.1
Q ss_pred ecc-cCCc-EEEcCCCCCCeEEEEEEcCeEEEec-Ccce--eeeCCCCCee
Q 007545 442 VPY-TQGM-FLVQEGNPVNKLQLIVVGGDTLSWS-STSV--FTPRKDGEFC 487 (599)
Q Consensus 442 ~~~-~~ge-~I~~~Gd~~~~myfI~~G~~v~i~~-~~g~--~~~l~~G~~f 487 (599)
+++ .||. .-+.- +..++++++++| .+.+.- ++|. ...+++||+|
T Consensus 38 mvvgGpn~r~d~H~-~~tdE~FyqleG-~~~l~v~d~g~~~~v~L~eGd~f 86 (177)
T PRK13264 38 MVVGGPNARTDFHY-DPGEEFFYQLEG-DMYLKVQEDGKRRDVPIREGEMF 86 (177)
T ss_pred EEEccCCccccccc-CCCceEEEEECC-eEEEEEEcCCceeeEEECCCCEE
Confidence 344 5553 23333 567899999999 877762 2332 3339999987
No 65
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=35.43 E-value=68 Score=27.77 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHhccc---------CCCC----HHHHHhhCChhHHHHHHhhcchh
Q 007545 369 VLSDNLKQKIRKYCQSVFQGT---------EGFN----LHQFFNDLPPELSFAMKHELCLP 416 (599)
Q Consensus 369 ~lp~~L~~rVr~y~~y~w~~~---------~~~~----e~~ll~~Lp~~Lr~~i~~~l~~~ 416 (599)
-||+++|.+|..-....-... .+-. ..++|..||++||.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 389999998854443321100 0000 24799999999999997765443
No 66
>PHA03029 hypothetical protein; Provisional
Probab=34.32 E-value=1.9e+02 Score=23.11 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=29.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHH
Q 007545 312 DAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSER 350 (599)
Q Consensus 312 ~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~ 350 (599)
++.|.+|-++..++=.++.--+||-+-..+-++++-+..
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888887777777888888888777654433
No 67
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=33.17 E-value=93 Score=27.44 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=31.3
Q ss_pred ccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 444 YTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 444 ~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..||..=..-++ +|...|++| .+++..++|....+++||.|
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G-~v~~T~d~Ge~v~~~aGD~~ 92 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEG-RVEVTPDGGEPVEVRAGDSF 92 (116)
T ss_pred ecCccceEEccc--ceEEEEEee-EEEEECCCCeEEEEcCCCEE
Confidence 355555444443 789999999 99999878887779999976
No 68
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.06 E-value=2.6e+02 Score=32.80 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=34.7
Q ss_pred hhCChhHHHHHHhhcchhhhc--CC---CcccCCCHHHHHHHHhhCc
Q 007545 399 NDLPPELSFAMKHELCLPVLK--EV---PMLQRMDEQRMNAILYHFN 440 (599)
Q Consensus 399 ~~Lp~~Lr~~i~~~l~~~~l~--~v---plF~~~~~~~l~~L~~~l~ 440 (599)
+.||++||+.|..+.+.+... .+ .+++++|++.-++|+.++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 469999999999998887765 33 4788999999999988883
No 69
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=32.02 E-value=49 Score=37.91 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=22.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 007545 552 EKWRNWAAVIIQQAWCRQRKKKFQTSLL 579 (599)
Q Consensus 552 ~~~~~~~~~~~q~~~~~~~~r~~~~~~~ 579 (599)
.+|..+|+ -||.|||++-.||.-+.+|
T Consensus 693 r~~d~~A~-~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 693 RKWDGMAR-RIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 67888887 6899999999888777666
No 70
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=31.90 E-value=47 Score=29.75 Aligned_cols=58 Identities=12% Similarity=-0.002 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007545 287 LQKFLYCFQWGIRSLSFAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHI 344 (599)
Q Consensus 287 ~~~Yl~slYwa~~TmtvGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~ 344 (599)
......+++..+.++.-+.++..|.+...+++.+++++++.++.+.--|++++++..-
T Consensus 42 ~~~~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cccHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456667777665555222367899999999999999999999999999999987643
No 71
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=31.78 E-value=1.1e+02 Score=22.77 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhcccCCCCHHHHHh
Q 007545 358 MQEVEMWRLFHVLS-------DNLKQKIRKYCQSVFQGTEGFNLHQFFN 399 (599)
Q Consensus 358 ~~~i~~~m~~~~lp-------~~L~~rVr~y~~y~w~~~~~~~e~~ll~ 399 (599)
+..+..|.++.++| ++|-.-|+++|. +..++|.+++.
T Consensus 3 ~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~-----s~~v~E~evI~ 46 (53)
T PF13867_consen 3 TPTLRRYKKHYKLPERPRSSKEQLANAVRKHFN-----SQPVDENEVIA 46 (53)
T ss_dssp HHHHHHHHHHTT----SS--HHHHHHHHHHHHT-----T----HHHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 56778899988887 567777777773 24588887764
No 72
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=28.97 E-value=2.3e+02 Score=20.56 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHh
Q 007545 318 FSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRK 354 (599)
Q Consensus 318 f~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k 354 (599)
++.+..+..++....+.+.++++-++++.+.+++|..
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~ 45 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEI 45 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555667777777777777666666666
No 73
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.82 E-value=1.1e+02 Score=27.14 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=33.6
Q ss_pred hhCceecccCCcEE-EcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 437 YHFNLVPYTQGMFL-VQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 437 ~~l~~~~~~~ge~I-~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..++...+.||+-+ .+--...++.|+|++| ...+.-+ +....+++||.+
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G-~g~v~~~-~~~~~v~~gd~~ 85 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEG-TGKVTIG-GEEVEVKAGDSV 85 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEee-EEEEEEC-CEEEEecCCCEE
Confidence 34566777888875 4444447899999999 8777743 333347888764
No 74
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=27.17 E-value=2.8e+02 Score=29.63 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 286 FLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQ 342 (599)
Q Consensus 286 ~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~ 342 (599)
..--|+.++=+++..+. ++-++....-..=..+++++.+++++.|-+.|.+++..++
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iq 154 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQ 154 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34567777778877777 7666552222223777777888888888888888877664
No 75
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=26.21 E-value=69 Score=25.97 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=30.3
Q ss_pred HHHHhhCChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceec
Q 007545 395 HQFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVP 443 (599)
Q Consensus 395 ~~ll~~Lp~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~ 443 (599)
.++|..||+++|.++...+ --+...+++.+..|...++...
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~l 70 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEKL 70 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999888765 3455788998888887776543
No 76
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=25.19 E-value=65 Score=24.58 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.3
Q ss_pred hCCCCHHHHHHHHHHHHHHhcc
Q 007545 367 FHVLSDNLKQKIRKYCQSVFQG 388 (599)
Q Consensus 367 ~~~lp~~L~~rVr~y~~y~w~~ 388 (599)
..++|++|++.|.+|.+|.-..
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 4589999999999999998754
No 77
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=24.45 E-value=4.3e+02 Score=22.22 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCCC
Q 007545 329 FIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMWRLFHVL 370 (599)
Q Consensus 329 ~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~l 370 (599)
+-+|.+++++-=+-..+.-.+++++-.+++++.++.++++++
T Consensus 48 fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv 89 (91)
T PF08285_consen 48 FGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGV 89 (91)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345677777766666665555555443337888888888876
No 78
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=23.98 E-value=3.5e+02 Score=22.57 Aligned_cols=56 Identities=5% Similarity=-0.024 Sum_probs=37.7
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhcccCCCCH--HHHHhhCChhHHHHHHhhc
Q 007545 358 MQEVEMWRLFH-VLSDNLKQKIRKYCQSVFQGTEGFNL--HQFFNDLPPELSFAMKHEL 413 (599)
Q Consensus 358 ~~~i~~~m~~~-~lp~~L~~rVr~y~~y~w~~~~~~~e--~~ll~~Lp~~Lr~~i~~~l 413 (599)
.+.++++|.+. +++++-+.++++.++..-.+....++ ..+-..++++.|..+...+
T Consensus 21 ~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L 79 (104)
T cd07313 21 RAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEAL 79 (104)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 56788888884 99999999999998875544333222 2334455677777766655
No 79
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=23.59 E-value=72 Score=34.56 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCeechhhhHhhhccCCCCCCCcCCCceEEEEe-ceeeeeEechHhHHHHHHhCC
Q 007545 483 DGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAV-TQVDAFSIEAGDLKEFVNQCR 537 (599)
Q Consensus 483 ~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~-~~~el~~L~~~dl~~l~~~fp 537 (599)
+||=||..++ .+..++.+|+..- .+|.....++.||++++.+-.
T Consensus 1 eGddfgklal-----------vnd~praativl~ed~~~fl~vDk~~Fn~I~~~vE 45 (573)
T KOG2378|consen 1 EGDDFGKLAL-----------VNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVE 45 (573)
T ss_pred CCcccchhcc-----------ccccccccceeeecCCCcceeecHHHHHHHHHhhh
Confidence 5889999887 3444666666544 469999999999999987753
No 80
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=23.29 E-value=2e+02 Score=26.35 Aligned_cols=45 Identities=4% Similarity=-0.011 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhcHHHHHHhhHhHHHHHHHHH
Q 007545 319 SSAMTITGAVFIPFHLWNVMQFLQHI-------------NGNSERKIRKSSQMQEVEMWRL 366 (599)
Q Consensus 319 ~i~~mi~G~~~fa~lIg~i~~il~~~-------------~~~~~~~~~k~~~~~~i~~~m~ 366 (599)
.+++.++|+.+||++++-+.+.-... ....++|+.+ ++...+.++
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~---v~~~~~~~k 66 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQR---VEQATENYK 66 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHH---HHHHHHHHH
Confidence 36788999999999998764321111 1245678888 666665554
No 81
>PRK09108 type III secretion system protein HrcU; Validated
Probab=23.03 E-value=3.2e+02 Score=29.07 Aligned_cols=71 Identities=10% Similarity=-0.023 Sum_probs=38.4
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHH
Q 007545 309 TSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYC 382 (599)
Q Consensus 309 ~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~ 382 (599)
++......++.++..++..+..++++-.+..+.-+--.-.++++=. .+++++=+|+..=+++++.|+|+=-
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMS---kqEvK~E~K~~EGdP~iK~rrRq~~ 243 (353)
T PRK09108 173 SPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMS---KDEVKREHKESEGDPHIKGERKRLA 243 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3344445555555555555555555544444332222111222222 5677777888888888888877643
No 82
>PRK06771 hypothetical protein; Provisional
Probab=22.83 E-value=4.3e+02 Score=22.33 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCC
Q 007545 315 ENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMWRLFHV 369 (599)
Q Consensus 315 E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~ 369 (599)
|....|.+.++|.+ |+...+..+.+.++.+....+.+ ++.+.+.+-...
T Consensus 2 E~~ili~~~~~~~i---~i~~~l~~~~~~~~~~~k~ie~~---L~~I~~~~Gi~~ 50 (93)
T PRK06771 2 EFWMIIPIAIFGFI---YIVEKLTKIEKKTDARLKRMEDR---LQLITKEMGIVD 50 (93)
T ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCC
Confidence 33334444344433 45556666667777777777777 666665554433
No 83
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.42 E-value=1.3e+03 Score=27.27 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhc-ccccccc-----ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cHHHHHHhhHhHHHHH
Q 007545 290 FLYCFQWGIRSLS-FAQNFQT-----STDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHING-NSERKIRKSSQMQEVE 362 (599)
Q Consensus 290 Yl~slYwa~~Tmt-vGyGdi~-----~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~-~~~~~~~k~~~~~~i~ 362 (599)
=..+++||+-+++ ++--+++ ..+.++.+|.+--++.=.++--.+|+-|.+-.|.+.. ...|++ -...+
T Consensus 554 S~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK-----FARAK 628 (822)
T KOG3609|consen 554 SSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK-----FARAK 628 (822)
T ss_pred HHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH-----HHHHH
Confidence 3468999997776 5544332 2344455555544444444555566665555555432 233443 34455
Q ss_pred HHHHh
Q 007545 363 MWRLF 367 (599)
Q Consensus 363 ~~m~~ 367 (599)
-||..
T Consensus 629 Lw~sy 633 (822)
T KOG3609|consen 629 LWMSY 633 (822)
T ss_pred HHHHH
Confidence 56654
No 84
>PF15157 IQ-like: IQ-like
Probab=21.76 E-value=1.2e+02 Score=25.03 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhh
Q 007545 560 VIIQQAWCRQRKKKF 574 (599)
Q Consensus 560 ~~~q~~~~~~~~r~~ 574 (599)
..||+|||+|-+|.-
T Consensus 51 kiiqrawre~lq~qd 65 (97)
T PF15157_consen 51 KIIQRAWREYLQRQD 65 (97)
T ss_pred HHHHHHHHHHHHhcC
Confidence 489999999988764
No 85
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=21.51 E-value=1.3e+02 Score=24.89 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=39.4
Q ss_pred CceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEece
Q 007545 439 FNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQ 518 (599)
Q Consensus 439 l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~ 518 (599)
.....+.||..+=.-.-.+.+..||++| .+.. .++. +.+|++.=+ +. .+..+..+.+.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG-~~~d--~~~~---~~~G~~~~~--------p~--------g~~h~~~s~~g 83 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEG-ELSD--GDGR---YGAGDWLRL--------PP--------GSSHTPRSDEG 83 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEEC-EEEE--TTCE---EETTEEEEE---------T--------TEEEEEEESSC
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEE-EEEE--CCcc---CCCCeEEEe--------CC--------CCccccCcCCC
Confidence 3455678888876666667788899999 7763 3332 577776521 11 23556777778
Q ss_pred eeeeE
Q 007545 519 VDAFS 523 (599)
Q Consensus 519 ~el~~ 523 (599)
|.+++
T Consensus 84 c~~~v 88 (91)
T PF12973_consen 84 CLILV 88 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
No 86
>PRK07668 hypothetical protein; Validated
Probab=21.10 E-value=2.9e+02 Score=27.99 Aligned_cols=56 Identities=11% Similarity=0.277 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHH-HHHHHHHhc-ccCCCCHHHHHhhCChhHHHHHHhhc
Q 007545 358 MQEVEMWRLFHVLSDNLKQKI-RKYCQSVFQ-GTEGFNLHQFFNDLPPELSFAMKHEL 413 (599)
Q Consensus 358 ~~~i~~~m~~~~lp~~L~~rV-r~y~~y~w~-~~~~~~e~~ll~~Lp~~Lr~~i~~~l 413 (599)
+.+++.|++.+++|++=++.+ .++.++... +++|.++++++.+=|++.-+|+....
T Consensus 10 l~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~~~~ 67 (254)
T PRK07668 10 LDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEYANELVKEM 67 (254)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHhccc
Confidence 777999999999997766664 445555443 45799999999996666666666653
No 87
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=20.96 E-value=1.4e+03 Score=27.07 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchh
Q 007545 368 HVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLP 416 (599)
Q Consensus 368 ~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~ 416 (599)
.++|+.||.+|..++..... +.-.+++.++++...++...+...
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~~~ 400 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMKAE 400 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhhee
Confidence 36899999999888754332 233578888988888888776443
No 88
>PRK11171 hypothetical protein; Provisional
Probab=20.38 E-value=2e+02 Score=29.24 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=36.8
Q ss_pred hCceecccCCcEEEc-CCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 438 HFNLVPYTQGMFLVQ-EGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 438 ~l~~~~~~~ge~I~~-~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
.+....+.||..+-. ......+.++|++| +.++.. ++....+.+||++
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G-~~~~~~-~~~~~~l~~GD~i 233 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEG-KGVYRL-NNDWVEVEAGDFI 233 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeC-EEEEEE-CCEEEEeCCCCEE
Confidence 456677899998866 35666799999999 998874 3455569999975
Done!