Query 007545
Match_columns 599
No_of_seqs 361 out of 2349
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 04:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 2.2E-33 7.6E-38 274.1 16.7 187 338-538 1-187 (212)
2 3bpz_A Potassium/sodium hyperp 100.0 3E-32 1E-36 264.1 21.3 183 342-540 2-184 (202)
3 2ptm_A Hyperpolarization-activ 100.0 7.9E-32 2.7E-36 260.2 19.9 184 343-542 2-186 (198)
4 3beh_A MLL3241 protein; transm 100.0 2E-31 6.7E-36 281.3 17.7 182 287-543 159-341 (355)
5 1orq_C Potassium channel; volt 99.8 1.5E-20 5.2E-25 185.0 15.9 210 40-343 8-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 1.8E-19 6.1E-24 166.5 12.8 139 394-542 5-143 (160)
7 2r9r_B Paddle chimera voltage 99.7 3.3E-17 1.1E-21 180.0 13.1 303 19-417 162-492 (514)
8 3ocp_A PRKG1 protein; serine/t 99.7 4.4E-17 1.5E-21 147.1 10.6 127 400-538 7-133 (139)
9 1wgp_A Probable cyclic nucleot 99.7 5E-16 1.7E-20 139.5 12.3 122 415-539 5-132 (137)
10 2pqq_A Putative transcriptiona 99.6 3.3E-15 1.1E-19 135.6 15.8 112 415-538 4-120 (149)
11 3gyd_A CNMP-BD protein, cyclic 99.6 1.3E-15 4.6E-20 145.1 13.3 133 394-538 13-154 (187)
12 3mdp_A Cyclic nucleotide-bindi 99.6 8.2E-16 2.8E-20 138.6 11.1 113 414-538 4-124 (142)
13 3idb_B CAMP-dependent protein 99.6 1.2E-15 4.1E-20 141.3 9.7 122 407-540 29-154 (161)
14 3shr_A CGMP-dependent protein 99.6 3E-15 1E-19 153.0 11.8 131 396-538 19-149 (299)
15 1vp6_A CNBD, cyclic-nucleotide 99.6 6.8E-15 2.3E-19 132.1 11.8 110 415-538 10-119 (138)
16 2d93_A RAP guanine nucleotide 99.6 7.4E-16 2.5E-20 138.2 4.9 125 402-538 2-128 (134)
17 3dn7_A Cyclic nucleotide bindi 99.6 1.5E-14 5.1E-19 138.0 13.4 116 413-540 4-125 (194)
18 4ev0_A Transcription regulator 99.6 2.3E-14 8E-19 138.8 15.0 111 418-540 1-116 (216)
19 2z69_A DNR protein; beta barre 99.6 1.3E-14 4.5E-19 132.5 12.4 113 415-538 11-128 (154)
20 3pna_A CAMP-dependent protein 99.6 8.2E-15 2.8E-19 134.7 10.8 113 414-538 36-148 (154)
21 3dkw_A DNR protein; CRP-FNR, H 99.5 6E-14 2E-18 137.0 13.6 116 414-540 7-127 (227)
22 3d0s_A Transcriptional regulat 99.5 2.8E-14 9.4E-19 139.6 10.8 113 415-539 5-122 (227)
23 3e97_A Transcriptional regulat 99.5 8E-14 2.7E-18 136.7 14.1 114 415-540 5-123 (231)
24 3of1_A CAMP-dependent protein 99.5 4.5E-14 1.6E-18 139.3 11.7 112 415-538 6-117 (246)
25 3dv8_A Transcriptional regulat 99.5 1.7E-13 5.7E-18 133.1 15.4 112 416-539 3-121 (220)
26 3iwz_A CAP-like, catabolite ac 99.5 1.3E-13 4.4E-18 134.9 14.1 111 415-536 10-125 (230)
27 3vou_A ION transport 2 domain 99.5 3.3E-13 1.1E-17 123.7 15.9 85 290-377 53-148 (148)
28 3fx3_A Cyclic nucleotide-bindi 99.5 1.2E-13 4.1E-18 136.0 13.8 113 414-538 9-126 (237)
29 1zyb_A Transcription regulator 99.5 1.8E-13 6.2E-18 134.6 14.9 113 415-538 17-136 (232)
30 4ava_A Lysine acetyltransferas 99.5 1.2E-13 4E-18 143.4 12.9 113 413-538 10-126 (333)
31 3of1_A CAMP-dependent protein 99.5 7.8E-14 2.7E-18 137.6 9.6 114 413-538 122-236 (246)
32 2gau_A Transcriptional regulat 99.5 5.6E-13 1.9E-17 130.7 15.2 111 418-540 12-127 (232)
33 4h33_A LMO2059 protein; bilaye 99.5 6.8E-14 2.3E-18 126.4 7.7 92 289-383 43-135 (137)
34 3shr_A CGMP-dependent protein 99.5 2E-13 7E-18 139.3 11.9 118 414-543 155-278 (299)
35 2a9h_A Voltage-gated potassium 99.5 1.7E-13 5.7E-18 126.2 9.9 64 288-351 83-147 (155)
36 2qcs_B CAMP-dependent protein 99.4 4.4E-13 1.5E-17 136.1 12.9 117 414-542 155-277 (291)
37 2qcs_B CAMP-dependent protein 99.4 4.5E-13 1.5E-17 136.0 12.7 116 411-538 34-149 (291)
38 3ryp_A Catabolite gene activat 99.4 1.1E-12 3.8E-17 126.3 13.7 109 422-541 2-115 (210)
39 2fmy_A COOA, carbon monoxide o 99.4 8.7E-13 3E-17 128.3 10.3 107 415-540 3-113 (220)
40 1o7f_A CAMP-dependent RAP1 gua 99.4 1.4E-12 4.6E-17 141.9 12.7 120 414-545 335-457 (469)
41 1o7f_A CAMP-dependent RAP1 gua 99.4 1.5E-12 5.2E-17 141.5 12.9 126 400-538 26-158 (469)
42 3tnp_B CAMP-dependent protein 99.4 3.4E-13 1.2E-17 144.7 7.6 119 408-538 137-259 (416)
43 4din_B CAMP-dependent protein 99.4 6.5E-13 2.2E-17 140.9 9.4 115 412-538 126-240 (381)
44 2oz6_A Virulence factor regula 99.4 3.4E-12 1.2E-16 122.6 13.6 105 427-539 1-110 (207)
45 3kcc_A Catabolite gene activat 99.4 3.9E-12 1.3E-16 127.5 13.4 105 425-540 55-164 (260)
46 4din_B CAMP-dependent protein 99.4 9.9E-13 3.4E-17 139.5 9.4 115 413-539 245-365 (381)
47 1ft9_A Carbon monoxide oxidati 99.4 1.2E-12 4.3E-17 127.5 9.0 107 417-542 1-111 (222)
48 3tnp_B CAMP-dependent protein 99.4 2.1E-12 7.2E-17 138.6 11.6 117 411-539 262-389 (416)
49 2ih3_C Voltage-gated potassium 99.3 7.2E-12 2.4E-16 110.8 10.9 59 288-346 60-119 (122)
50 3eff_K Voltage-gated potassium 99.3 1.2E-11 4.3E-16 112.0 11.5 90 288-381 39-130 (139)
51 1o5l_A Transcriptional regulat 99.3 1.2E-11 4E-16 119.9 11.5 108 421-539 4-116 (213)
52 3e6c_C CPRK, cyclic nucleotide 99.3 1E-11 3.6E-16 123.3 10.7 107 418-539 11-122 (250)
53 4f7z_A RAP guanine nucleotide 99.3 8.7E-12 3E-16 148.1 11.1 111 415-538 41-158 (999)
54 3cf6_E RAP guanine nucleotide 99.2 1.3E-11 4.4E-16 140.3 10.5 131 396-539 13-146 (694)
55 4f7z_A RAP guanine nucleotide 99.2 5.9E-11 2E-15 141.0 13.5 110 414-535 335-447 (999)
56 3la7_A Global nitrogen regulat 99.2 1.6E-10 5.5E-15 114.3 14.3 102 429-540 30-139 (243)
57 2bgc_A PRFA; bacterial infecti 99.1 3.2E-10 1.1E-14 111.6 13.3 103 426-540 3-114 (238)
58 2q67_A Potassium channel prote 99.1 1.3E-09 4.3E-14 95.1 12.9 57 289-345 49-106 (114)
59 2k1e_A Water soluble analogue 99.0 6.2E-11 2.1E-15 101.6 3.3 57 289-345 40-97 (103)
60 3ldc_A Calcium-gated potassium 98.9 1.6E-09 5.4E-14 88.7 7.4 53 289-341 28-81 (82)
61 3ouf_A Potassium channel prote 98.9 1.8E-09 6E-14 91.3 7.3 54 290-343 33-87 (97)
62 3pjs_K KCSA, voltage-gated pot 98.9 9.5E-11 3.3E-15 109.4 -1.1 61 288-348 66-127 (166)
63 3b02_A Transcriptional regulat 98.9 2.7E-09 9.3E-14 101.5 8.4 76 442-530 2-82 (195)
64 3rvy_A ION transport protein; 98.8 3.4E-08 1.2E-12 100.2 13.3 59 287-345 178-243 (285)
65 2zcw_A TTHA1359, transcription 98.7 1E-08 3.4E-13 98.1 6.6 82 435-530 1-89 (202)
66 1xl4_A Inward rectifier potass 98.7 3.6E-08 1.2E-12 100.4 8.7 55 289-343 82-137 (301)
67 3um7_A Potassium channel subfa 98.6 7.3E-08 2.5E-12 97.9 9.8 56 289-344 115-171 (309)
68 1p7b_A Integral membrane chann 98.6 2.7E-08 9.2E-13 102.5 5.2 57 289-345 96-153 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.4 2.2E-07 7.6E-12 95.3 6.7 56 289-344 78-134 (321)
70 3um7_A Potassium channel subfa 98.3 2.6E-07 8.8E-12 93.9 4.8 60 289-348 224-290 (309)
71 4gx0_A TRKA domain protein; me 98.3 2.4E-06 8.1E-11 95.0 12.0 52 290-341 52-105 (565)
72 3ukm_A Potassium channel subfa 98.2 1.6E-06 5.3E-11 86.8 7.9 55 289-343 93-148 (280)
73 3sya_A G protein-activated inw 98.1 8.3E-06 2.9E-10 83.8 10.6 57 289-345 91-150 (340)
74 3ukm_A Potassium channel subfa 98.1 2E-06 6.7E-11 86.1 5.5 54 290-343 202-263 (280)
75 1lnq_A MTHK channels, potassiu 98.0 5E-07 1.7E-11 93.7 -1.8 55 290-344 46-101 (336)
76 3spc_A Inward-rectifier K+ cha 98.0 2.7E-05 9.1E-10 80.1 10.5 56 288-343 93-151 (343)
77 4dxw_A Navrh, ION transport pr 97.1 0.011 3.8E-07 57.2 15.3 74 40-141 12-88 (229)
78 2kyh_A KVAP, voltage-gated pot 95.0 0.032 1.1E-06 50.2 5.9 46 81-143 52-98 (147)
79 1ors_C Potassium channel; volt 92.5 0.13 4.5E-06 45.2 4.9 46 80-142 36-82 (132)
80 2l53_B CAM, voltage-gated sodi 91.7 0.15 5E-06 32.7 3.0 23 553-575 3-25 (31)
81 2kxw_B Sodium channel protein 91.2 0.16 5.6E-06 31.5 2.8 21 554-574 4-24 (27)
82 4dck_A Sodium channel protein 58.2 7.7 0.00026 35.2 3.8 26 552-577 126-151 (168)
83 1lj2_A NSP3-C, nonstructural R 55.4 44 0.0015 27.4 7.3 65 333-401 7-76 (110)
84 3rns_A Cupin 2 conserved barre 54.2 33 0.0011 32.4 7.8 69 438-524 38-106 (227)
85 3es4_A Uncharacterized protein 53.9 11 0.00038 32.0 3.9 43 444-488 49-91 (116)
86 3lwc_A Uncharacterized protein 53.8 17 0.00059 30.6 5.2 43 442-487 45-87 (119)
87 1o5u_A Novel thermotoga mariti 53.3 23 0.0008 28.9 5.8 45 440-487 34-78 (101)
88 3bcw_A Uncharacterized protein 50.4 9.5 0.00033 32.6 3.0 44 443-488 55-98 (123)
89 3h8u_A Uncharacterized conserv 49.9 17 0.00059 30.3 4.6 48 439-487 41-89 (125)
90 3bxl_B CAM, voltage-dependent 48.8 14 0.00049 22.3 2.6 20 557-576 3-22 (26)
91 3fjs_A Uncharacterized protein 46.6 29 0.00098 28.7 5.4 47 439-487 38-84 (114)
92 3kg2_A Glutamate receptor 2; I 46.1 18 0.00063 40.9 5.4 54 289-343 563-617 (823)
93 3dvk_B Voltage-dependent R-typ 45.2 16 0.00055 21.5 2.3 19 555-573 5-23 (23)
94 2ozj_A Cupin 2, conserved barr 42.6 28 0.00097 28.4 4.7 43 443-487 44-86 (114)
95 1zvf_A 3-hydroxyanthranilate 3 42.0 54 0.0018 29.8 6.6 57 430-487 12-90 (176)
96 3es1_A Cupin 2, conserved barr 41.2 24 0.00081 32.1 4.2 46 441-487 83-128 (172)
97 2fqp_A Hypothetical protein BP 37.4 16 0.00053 29.3 2.2 46 441-487 22-69 (97)
98 2qnk_A 3-hydroxyanthranilate 3 37.3 42 0.0014 32.9 5.5 58 455-529 49-109 (286)
99 1yfu_A 3-hydroxyanthranilate-3 37.3 33 0.0011 31.2 4.4 58 429-487 11-87 (174)
100 2gu9_A Tetracenomycin polyketi 37.3 48 0.0016 26.5 5.3 46 440-487 24-72 (113)
101 1v70_A Probable antibiotics sy 36.7 53 0.0018 25.6 5.4 46 440-487 31-77 (105)
102 3d0j_A Uncharacterized protein 36.4 76 0.0026 27.7 6.4 59 452-527 45-110 (140)
103 2i45_A Hypothetical protein; n 36.0 36 0.0012 27.4 4.3 68 445-529 36-103 (107)
104 1yhf_A Hypothetical protein SP 35.2 51 0.0017 26.7 5.2 46 440-487 43-88 (115)
105 2pfw_A Cupin 2, conserved barr 34.4 50 0.0017 26.8 5.0 46 440-487 37-82 (116)
106 1dgw_A Canavalin; duplicated s 33.6 29 0.00097 31.5 3.5 48 439-487 43-93 (178)
107 4e2g_A Cupin 2 conserved barre 33.3 50 0.0017 27.3 4.9 47 439-487 43-89 (126)
108 2q30_A Uncharacterized protein 32.1 67 0.0023 25.5 5.4 45 442-487 38-84 (110)
109 2pyt_A Ethanolamine utilizatio 31.7 35 0.0012 29.4 3.6 43 442-488 62-104 (133)
110 2bnm_A Epoxidase; oxidoreducta 30.4 47 0.0016 30.1 4.6 44 443-487 123-172 (198)
111 4b29_A Dimethylsulfoniopropion 30.4 46 0.0016 31.4 4.3 45 442-487 137-181 (217)
112 3dve_B Voltage-dependent N-typ 29.2 17 0.00058 21.4 0.7 19 555-573 4-22 (23)
113 4axo_A EUTQ, ethanolamine util 28.6 42 0.0014 29.8 3.6 30 456-487 83-112 (151)
114 3d82_A Cupin 2, conserved barr 27.7 1.3E+02 0.0043 23.4 6.3 52 457-526 50-101 (102)
115 3myx_A Uncharacterized protein 27.5 53 0.0018 31.5 4.3 31 457-488 186-216 (238)
116 2b8m_A Hypothetical protein MJ 27.5 48 0.0016 27.1 3.7 45 442-487 32-76 (117)
117 1n2d_C IQ2 and IQ3 motifs from 27.3 46 0.0016 22.8 2.9 18 556-573 28-45 (48)
118 3or8_A Transcription elongatio 26.8 1.2E+02 0.0041 28.1 6.5 39 418-461 5-44 (197)
119 3ibm_A Cupin 2, conserved barr 25.9 78 0.0027 28.1 5.0 46 440-487 59-104 (167)
120 2f3y_B Voltage-dependent L-typ 25.9 48 0.0017 19.9 2.3 19 558-576 4-22 (26)
121 4e2q_A Ureidoglycine aminohydr 25.8 43 0.0015 32.7 3.4 46 441-487 74-119 (266)
122 2opk_A Hypothetical protein; p 25.6 58 0.002 26.7 3.8 32 455-487 51-83 (112)
123 2be6_D Voltage-dependent L-typ 25.4 65 0.0022 21.1 3.0 20 557-576 12-31 (37)
124 3nw4_A Gentisate 1,2-dioxygena 24.9 1.1E+02 0.0038 31.2 6.4 79 442-538 284-362 (368)
125 3bu7_A Gentisate 1,2-dioxygena 24.7 40 0.0014 34.9 3.1 47 440-487 126-172 (394)
126 3lag_A Uncharacterized protein 22.9 28 0.00095 28.1 1.2 48 439-487 19-69 (98)
127 2vpv_A Protein MIF2, MIF2P; nu 22.7 60 0.0021 29.2 3.5 30 456-487 109-138 (166)
128 1y9q_A Transcriptional regulat 22.0 1.2E+02 0.0041 27.2 5.6 44 442-487 109-154 (192)
129 3i7d_A Sugar phosphate isomera 21.9 72 0.0024 28.2 3.9 45 441-487 47-93 (163)
130 1sfn_A Conserved hypothetical 21.8 84 0.0029 29.9 4.6 49 437-487 165-214 (246)
131 3jzv_A Uncharacterized protein 21.4 66 0.0022 28.7 3.5 44 442-487 58-101 (166)
132 2o8q_A Hypothetical protein; c 21.1 86 0.003 26.2 4.2 30 457-487 64-93 (134)
133 4i4a_A Similar to unknown prot 20.5 1E+02 0.0035 25.4 4.5 44 442-487 39-82 (128)
134 1vj2_A Novel manganese-contain 20.5 88 0.003 26.0 4.0 44 442-487 53-96 (126)
135 2f4p_A Hypothetical protein TM 20.5 87 0.003 27.0 4.1 46 441-487 52-97 (147)
136 3g43_E Voltage-dependent L-typ 20.5 50 0.0017 25.9 2.1 19 555-573 62-80 (81)
137 1o4t_A Putative oxalate decarb 20.3 88 0.003 26.3 4.0 45 441-487 61-106 (133)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=2.2e-33 Score=274.11 Aligned_cols=187 Identities=16% Similarity=0.301 Sum_probs=162.8
Q ss_pred HHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhh
Q 007545 338 MQFLQHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPV 417 (599)
Q Consensus 338 ~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~ 417 (599)
|+|+++++++.++|+++ |+.+++||++++||++||.||++||+|.|.++++.|++++++.||++||.++..+++..+
T Consensus 1 g~ii~~~~~~~~~~~~~---~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l 77 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTR---TKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKEL 77 (212)
T ss_dssp -----------CHHHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGG
T ss_pred ChHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 46889999999999999 999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhc
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVD 497 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~ 497 (599)
+ ++|+|++++++++..++..+++..|.|||+|+++||+++++|||.+| .|+++.++.....+++|++|||..+ +.
T Consensus 78 ~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G-~v~v~~~~~~~~~l~~G~~fGe~~~---~~ 152 (212)
T 3ukn_A 78 L-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSG-SMEVLKDNTVLAILGKGDLIGSDSL---TK 152 (212)
T ss_dssp G-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEEC-CEEEESSSCEEEEECTTCEEECSCC---SS
T ss_pred H-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEec-EEEEEECCeEEEEecCCCCcCcHHh---cc
Confidence 8 89999999999999999999999999999999999999999999999 9999964444455999999999877 22
Q ss_pred cCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 498 QQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 498 ~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+.. +++++|++|+++|+++.|++++|.++++++|+
T Consensus 153 ~~~------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~ 187 (212)
T 3ukn_A 153 EQV------IKTNANVKALTYCDLQYISLKGLREVLRLYPE 187 (212)
T ss_dssp SSC------CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred CCC------CCcceEEEEcccEEEEEEeHHHHHHHHHHChH
Confidence 111 15689999999999999999999999999977
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=3e-32 Score=264.14 Aligned_cols=183 Identities=20% Similarity=0.358 Sum_probs=168.4
Q ss_pred HHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhhhcCC
Q 007545 342 QHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEV 421 (599)
Q Consensus 342 ~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~v 421 (599)
++++++.++|+++ ++.+++||++++||++||.||++|++|.|.. ++.+|+++++.||++||.+|..+++.++++++
T Consensus 2 ~~~~~~~~~~~~~---~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~ 77 (202)
T 3bpz_A 2 SAMDSSRRQYQEK---YKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASM 77 (202)
T ss_dssp ---CHHHHHHHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTC
T ss_pred CCCCHHHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999 9999999999999999999999999999984 78999999999999999999999999999999
Q ss_pred CcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCC
Q 007545 422 PMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSD 501 (599)
Q Consensus 422 plF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~ 501 (599)
|+|++++++++..++..+++..|.|||+|+++||+++++|||.+| .|+++..+|....+++|++|||.++ +.+.
T Consensus 78 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G-~v~v~~~~g~~~~l~~G~~fGe~~~---~~~~-- 151 (202)
T 3bpz_A 78 PLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGNKEMKLSDGSYFGEICL---LTRG-- 151 (202)
T ss_dssp HHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEEC-EEEEECTTSCCEEEETTCEECHHHH---HHCS--
T ss_pred CchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEecc-EEEEEECCCeEEEEcCCCEeccHHH---hcCC--
Confidence 999999999999999999999999999999999999999999999 9999976776667999999999877 2221
Q ss_pred CCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 502 SSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 502 ~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
+++++++|.++|+++.|++++|..+++++|+..
T Consensus 152 ------~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~ 184 (202)
T 3bpz_A 152 ------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMR 184 (202)
T ss_dssp ------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGH
T ss_pred ------CcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHH
Confidence 568999999999999999999999999997633
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.98 E-value=7.9e-32 Score=260.22 Aligned_cols=184 Identities=17% Similarity=0.322 Sum_probs=167.4
Q ss_pred HhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhhhcCCC
Q 007545 343 HINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEVP 422 (599)
Q Consensus 343 ~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~vp 422 (599)
+++++..+|+++ ++.+++||++++||++||.||++|++|.|+ +++.+|+++++.||++||.++..+++.++++++|
T Consensus 2 ~~~~~~~~~~~~---~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~ 77 (198)
T 2ptm_A 2 AMDSSSRQYREK---LKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVP 77 (198)
T ss_dssp --CHHHHHHHHH---HHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCG
T ss_pred CCCHHHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCc
Confidence 678899999999 999999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcce-eeeCCCCCeechhhhHhhhccCCC
Q 007545 423 MLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSV-FTPRKDGEFCGEELVSWAVDQQSD 501 (599)
Q Consensus 423 lF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~-~~~l~~G~~fGE~~l~~~l~~~~~ 501 (599)
+|++++++++..++..+++..|.|||+|+++||+++++|||.+| .|+++..+|. ...+++|++|||..+ +.+.
T Consensus 78 ~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G-~v~~~~~~g~~~~~l~~G~~fGe~~~---~~~~-- 151 (198)
T 2ptm_A 78 FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG-IVDIIMSDGVIATSLSDGSYFGEICL---LTRE-- 151 (198)
T ss_dssp GGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEEC-CEEEECTTSCEEEEECTTCEESCHHH---HHSS--
T ss_pred chhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeC-EEEEEecCCeEEEEecCCCEechHHH---cCCC--
Confidence 99999999999999999999999999999999999999999999 9999955554 344999999999876 3222
Q ss_pred CCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhch
Q 007545 502 SSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQ 542 (599)
Q Consensus 502 ~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~ 542 (599)
++++|++|.++|+++.|++++|.++++++|+....
T Consensus 152 ------~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~ 186 (198)
T 2ptm_A 152 ------RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKT 186 (198)
T ss_dssp ------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHH
T ss_pred ------ccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHH
Confidence 56899999999999999999999999999774333
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=2e-31 Score=281.33 Aligned_cols=182 Identities=14% Similarity=0.227 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHHH
Q 007545 287 LQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMWR 365 (599)
Q Consensus 287 ~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~m 365 (599)
+..|..|+||+++||| +||||++|.|..|+++++++|++|.+++|+.+|.+++.+++. .+++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~------~~~~----------- 221 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE------VRRG----------- 221 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-----------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-----------
Confidence 4568899999999999 999999999999999999999999999999999998765421 1101
Q ss_pred HhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhCChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceeccc
Q 007545 366 LFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYT 445 (599)
Q Consensus 366 ~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~ 445 (599)
++.+ +.+.++++|+|++++++.+++++..++++.++
T Consensus 222 --------------~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~ 257 (355)
T 3beh_A 222 --------------DFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVP 257 (355)
T ss_dssp --------------HHHH------------------------------HHC-----------------------------
T ss_pred --------------hhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEEC
Confidence 0100 24678899999999999999999999999999
Q ss_pred CCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEec
Q 007545 446 QGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIE 525 (599)
Q Consensus 446 ~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~ 525 (599)
|||.|+++||+++++|||.+| .|+++..+ ...+++|++|||.++ +.+. +++.+++|.++|+++.++
T Consensus 258 ~ge~I~~~G~~~~~ly~I~~G-~v~v~~~~--~~~l~~G~~fGe~~~---l~~~--------~~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 258 AGAVICRIGEPGDRMFFVVEG-SVSVATPN--PVELGPGAFFGEMAL---ISGE--------PRSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEeCCCcCceEEEEEee-EEEEEECC--eeEECCCCEEeehHH---hCCC--------CcceEEEECccEEEEEEe
Confidence 999999999999999999999 99998443 345999999999976 3221 568899999999999999
Q ss_pred hHhHHHHHHhCCchhchh
Q 007545 526 AGDLKEFVNQCRQPDGQL 543 (599)
Q Consensus 526 ~~dl~~l~~~fp~~~~~l 543 (599)
+++|+++++++|+..+.+
T Consensus 324 ~~~f~~ll~~~p~~~~~l 341 (355)
T 3beh_A 324 SADFQMLCSSSPEIAEIF 341 (355)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHCHHHHHHH
Confidence 999999999998844443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.84 E-value=1.5e-20 Score=184.98 Aligned_cols=210 Identities=14% Similarity=0.120 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHhhcceeeEEEEEeccceeEeecCCchhhHHHHHHHHHHHHHHHHHHhhccceeccccccCCCccc
Q 007545 40 DNWNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVYIRAHTHVPVPDFINGRGFHT 119 (599)
Q Consensus 40 ~~Wd~~~~~~~~~~~~v~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~DI~l~F~tay~~~~~v~~~G~l~ 119 (599)
..||.+++++.+++++..++..+ ...+.+....+..+|.++|++|.+|++++|.++.
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~----------~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~------------- 64 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECT----------MQLSGEYLVRLYLVDLILVIILWADYAYRAYKSG------------- 64 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH----------HHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHh----------cccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc-------------
Confidence 35888777777776665443100 0122334456778999999999999999999862
Q ss_pred CHHHHHHHhHH-HHHHHHHhcchhhhhheeeecCcccchhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhc-hhhHHHH
Q 007545 120 SKWTFAKKFFC-LLNGIVSVLPLPQAVIYLVVPKMRGHKFLSAMSLLKFVLVAQFLPRFVRMYQLFTKAASS-SGAVHGL 197 (599)
Q Consensus 120 d~~~Ia~~Ylk-F~~Dlls~lPl~~i~~~~~~~~~~~~~~~~~~~~lrl~~l~~~l~rl~ri~~l~~~~~~~-~~~~~~~ 197 (599)
+ .++|+| +++|+++++|++.... +. ... ...+.+|++|++|. .|++|+.+..++..+. ...+ ..
T Consensus 65 ~----~~~y~~~~iiDllailP~~~~~~----~~---~~~-~~~~~lr~lRllRl-lR~~r~~~~~~~~~~~l~~~~-~~ 130 (223)
T 1orq_C 65 D----PAGYVKKTLYEIPALVPAGLLAL----IE---GHL-AGLGLFRLVRLLRF-LRILLIISRGSKFLSAIADAA-DK 130 (223)
T ss_dssp C----HHHHHHHHHHHCTTHHHHHHHHH----HH---HHH-HTTTCHHHHHHHHH-HHHHHHHHSCSSHHHHHHHHH-HH
T ss_pred c----HHHHHHHhHHHHHHHHHHHHHHH----Hh---cch-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 269999 9999999999975432 10 010 00123333333221 2333333321111110 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhcCCCCCCcccccCCCccccccCCCCCCCCCCCccccchhhhc
Q 007545 198 ASGIFHFLVYLLVSHSFGALWYFLAIVRVSVCWRQACLHAGCSSHDSFYCDDDKSLNAFCPAKLRDPTSFDFGMFHDALQ 277 (599)
Q Consensus 198 ~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~f~~giy~~a~~ 277 (599)
.+....++..++..|+.||++|++.- + +
T Consensus 131 ~~l~~~~~~~~~~~~~~~~~~~~~e~-----------------~---------------------~-------------- 158 (223)
T 1orq_C 131 IRFYHLFGAVMLTVLYGAFAIYIVEY-----------------P---------------------D-------------- 158 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-----------------S---------------------S--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----------------C---------------------C--------------
Confidence 11111223334577899998876530 0 0
Q ss_pred cCcccccchhhHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 278 SGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQH 343 (599)
Q Consensus 278 ~~~~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~ 343 (599)
+++....|..|+||+++||| +||||++|+|..|++++++.|++|.+++|+.+|++++.+++
T Consensus 159 -----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 159 -----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp -----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00123468999999999999 99999999999999999999999999999999999998875
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.80 E-value=1.8e-19 Score=166.47 Aligned_cols=139 Identities=18% Similarity=0.252 Sum_probs=115.6
Q ss_pred HHHHHhhCChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEec
Q 007545 394 LHQFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWS 473 (599)
Q Consensus 394 e~~ll~~Lp~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~ 473 (599)
.+++++.||++||.++..+++.++++++|+|++++++.+..++..++...|.+||+|+++||+++.+|||.+| .|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~ 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSG-SLEVIQ 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEES-EEEEEE
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEee-EEEEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999 999986
Q ss_pred CcceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhch
Q 007545 474 STSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQ 542 (599)
Q Consensus 474 ~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~ 542 (599)
++.....+++|++|||..+ +.+.. .++..+++|.++|+++.+++++|.++++++|+....
T Consensus 84 ~~~~~~~~~~G~~fG~~~~---~~~~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~ 143 (160)
T 4f8a_A 84 DDEVVAILGKGDVFGDVFW---KEATL------AQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHS 143 (160)
T ss_dssp TTEEEEEEETTCEEECCTT---TCSSC------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHH
T ss_pred CCEEEEEecCCCEeCcHHH---hcCcc------cceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5555556999999999977 32211 266889999999999999999999999999774333
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.71 E-value=3.3e-17 Score=179.96 Aligned_cols=303 Identities=10% Similarity=0.075 Sum_probs=141.8
Q ss_pred hhHhhcccCCCCccCCC-ChhHHHHHHHHHHHHHHHHhhcceeeEEEEEeccc----ee-----------E--eecCCch
Q 007545 19 RRLRNRIISAPRNSPSS-SRSFDNWNLIFVAACWLSISLDGSFFYILYIDDYR----KC-----------L--VLAKDLT 80 (599)
Q Consensus 19 ~~~~~~~~~~~~ii~P~-s~~~~~Wd~~~~~~~~~~~~v~Pl~~~~~~~~~~~----~~-----------~--~~~~~~~ 80 (599)
.++|++.+.. +=+|. |...+.++.++++++++++++..+. ..|...... .+ . .......
T Consensus 162 ~~~r~~lw~l--~e~p~sS~~a~~f~~~~i~~Illsii~~~le-T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2r9r_B 162 NEFQRQVWLL--FEYPESSGPARIIAIVSVMVILISIVSFCLE-TLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFT 238 (514)
T ss_dssp CSSHHHHHHT--TTCTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCC
T ss_pred HHHHHHHHHH--hcCCCCcHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccccccccccccccccchhh
Confidence 4456555543 22576 4667788887777776665543321 011100000 00 0 0001123
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccceeccccccCCCcccCHHHHHHHhHH---HHHHHHHhcchhhhhheeeecCccc-c
Q 007545 81 FTLVVLRTVLDSFQIVYVYIRAHTHVPVPDFINGRGFHTSKWTFAKKFFC---LLNGIVSVLPLPQAVIYLVVPKMRG-H 156 (599)
Q Consensus 81 ~~~~~~~~i~D~~f~~DI~l~F~tay~~~~~v~~~G~l~d~~~Ia~~Ylk---F~~Dlls~lPl~~i~~~~~~~~~~~-~ 156 (599)
..+.+++.+++++|.+|++++|.++-- .++|++ .++|+++++|+...+.. +.... +
T Consensus 239 ~~l~~ie~i~~~iFtiE~ilR~~~~~~-----------------k~~Y~ks~wniiDli~iip~~i~l~~---~~~~~~~ 298 (514)
T 2r9r_B 239 DPFFIVETLCIIWFSFEFLVRFFACPS-----------------KAGFFTNIMNIIDIVAIIPYYVTIFL---TESNKSV 298 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSC-----------------SSSSTTSHHHHHHHHTTHHHHHHHHH---HHTSCSH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCc-----------------HHHHHhchhHHHHHHHHHHHHHHHHh---hhccccc
Confidence 457789999999999999999987521 136888 68999999998543321 11111 1
Q ss_pred h-hhhhhhHHHHHHHHhhhhHHHHHHHHHHH---hhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 007545 157 K-FLSAMSLLKFVLVAQFLPRFVRMYQLFTK---AASSSGAVHGLASGIFHFL-VYLLVSHSFGALWYFLAIVRVSVCWR 231 (599)
Q Consensus 157 ~-~~~~~~~lrl~~l~~~l~rl~ri~~l~~~---~~~~~~~~~~~~~~~~~l~-~~~l~~H~~aC~wy~i~~~~~~~c~~ 231 (599)
. .......+|++|++ |++|++++.+. ++.....+......+..++ +.++..+++||+.|++.-
T Consensus 299 ~~~~~~~~~lrvlRll----RvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~-------- 366 (514)
T 2r9r_B 299 LQFQNVRRVVQIFRIM----RILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA-------- 366 (514)
T ss_dssp HHHHTTHHHHHHHHHH----GGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred hhhhhHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeec--------
Confidence 1 01112334444443 33333333322 1111111111111111222 223456777877764420
Q ss_pred hhhhcCCCCCCcccccCCCccccccCCCCCCCCCCCccccchhhhccCcccccchhhHHHHHHHHHHHHhc-cccccccc
Q 007545 232 QACLHAGCSSHDSFYCDDDKSLNAFCPAKLRDPTSFDFGMFHDALQSGIVEVTNFLQKFLYCFQWGIRSLS-FAQNFQTS 310 (599)
Q Consensus 232 ~~c~~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~f~~giy~~a~~~~~~~~~~~~~~Yl~slYwa~~Tmt-vGyGdi~~ 310 (599)
|. +.+.+..|..|+||+++||| +||||+.|
T Consensus 367 --------------------~~-----------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P 397 (514)
T 2r9r_B 367 --------------------DE-----------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVP 397 (514)
T ss_dssp --------------------TC-----------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCC
T ss_pred --------------------cC-----------------------------CCccccchhhhhheeeeEEEecccCCCCC
Confidence 00 01123457889999999999 99999999
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccC
Q 007545 311 TDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTE 390 (599)
Q Consensus 311 ~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~ 390 (599)
.+..++++++++|++|.+++++.+|.+.+-++....++++ ++. .+..++++.-...|.....+ + .+.+
T Consensus 398 ~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~---~~l~~h~iicg~~~~~~~l~--~------~~~~ 465 (514)
T 2r9r_B 398 TTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEE---QAQYLQVTSSPKIPSSPDLK--K------SRSA 465 (514)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-----------------------------------------
T ss_pred CCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHhhCCEEEeCCCccchhHH--h------cccC
Confidence 9999999999999999999999999998877766553322 111 22233444444444433222 1 1122
Q ss_pred CCCHHHHHhhCChhHHHHHHhhcchhh
Q 007545 391 GFNLHQFFNDLPPELSFAMKHELCLPV 417 (599)
Q Consensus 391 ~~~e~~ll~~Lp~~Lr~~i~~~l~~~~ 417 (599)
...++.-..+|.+.++.++..+-....
T Consensus 466 ~~~~~s~~~el~e~~~~~~~~~~~~~~ 492 (514)
T 2r9r_B 466 STISKSDYMEIQEGVNNSNEDFREENL 492 (514)
T ss_dssp ---------------------------
T ss_pred CCccccccccccccccccccccccccc
Confidence 333455567788888877776554433
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.70 E-value=4.4e-17 Score=147.11 Aligned_cols=127 Identities=13% Similarity=0.187 Sum_probs=112.1
Q ss_pred hCChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceee
Q 007545 400 DLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFT 479 (599)
Q Consensus 400 ~Lp~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~ 479 (599)
++|+.+|.+...+...++++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+| .|++..+.....
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~g~~~~ 85 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDG-KVEVTKEGVKLC 85 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEEC-CEEEEETTEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeC-EEEEEECCEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 999975333444
Q ss_pred eCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 480 PRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 480 ~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
.+++|++|||..+ +.+. +++.+++|.++|+++.|++++|.++++++|.
T Consensus 86 ~~~~G~~fGe~~~---l~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 133 (139)
T 3ocp_A 86 TMGPGKVFGELAI---LYNC--------TRTATVKTLVNVKLWAIDRQCFQTIMMRTGL 133 (139)
T ss_dssp EECTTCEESCHHH---HHCC--------CCSSEEEESSCEEEEEEEHHHHHHHHTC---
T ss_pred EeCCCCEeccHHH---HCCC--------CcceEEEECcceEEEEEcHHHHHHHHhhChH
Confidence 4999999999977 3322 5688999999999999999999999999987
No 9
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.66 E-value=5e-16 Score=139.52 Aligned_cols=122 Identities=37% Similarity=0.646 Sum_probs=103.0
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCccee---e--eCCCCCeec
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTSVF---T--PRKDGEFCG 488 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g~~---~--~l~~G~~fG 488 (599)
.++++++|+|++++++.++.++..++.+.|.+||+|+++||+++.+|||.+| .|++. ..+|.. . .+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~g~~~~~~~~~l~~G~~fG 83 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRG-RLESVTTDGGRSGFYNRSLLKEGDFCG 83 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEEC-CCEEECCSSCSSSSSCEEECCTTCBSS
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEee-EEEEEEcCCCcceeeeeeeecCCCEec
Confidence 4678999999999999999999999999999999999999999999999999 99976 334432 3 589999999
Q ss_pred hhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 489 EELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 489 E~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
|..+++.+.+.+. ...|+++++++|+++|+++.|++++|.++++++|+.
T Consensus 84 e~~l~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l 132 (137)
T 1wgp_A 84 DELLTWALDPKSG--SNLPSSTRTVKALTEVEAFALIADELKFVASQFRRS 132 (137)
T ss_dssp THHHHHHHCSSCC--SSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred HHHHHHHhccccc--cccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhh
Confidence 9975334543322 122246789999999999999999999999999983
No 10
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.64 E-value=3.3e-15 Score=135.59 Aligned_cols=112 Identities=23% Similarity=0.332 Sum_probs=99.0
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeech
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGE 489 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE 489 (599)
.++++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~~g~~~G~ 82 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEG-KVKLHRTSPDGRENMLAVVGPSELIGE 82 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEES-CEEEEEECTTSSEEEEEEECTTCEESG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEec-EEEEEEECCCCcEEEEEEcCCcCEech
Confidence 5789999999999999999999999999999999999999999999999999 99998 334433 33899999999
Q ss_pred hhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 490 ELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 490 ~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
..+ +.+ .++..+++|.++|+++.+++++|.++++++|+
T Consensus 83 ~~~---~~~--------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~ 120 (149)
T 2pqq_A 83 LSL---FDP--------GPRTATGTALTEVKLLALGHGDLQPWLNVRPE 120 (149)
T ss_dssp GGG---TSC--------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTH
T ss_pred HHh---cCC--------CCcceEEEEccceEEEEEeHHHHHHHHHhCcH
Confidence 876 322 15688999999999999999999999999965
No 11
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.64 E-value=1.3e-15 Score=145.14 Aligned_cols=133 Identities=15% Similarity=0.229 Sum_probs=111.4
Q ss_pred HHHHHhhCChhHH----HHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeE
Q 007545 394 LHQFFNDLPPELS----FAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDT 469 (599)
Q Consensus 394 e~~ll~~Lp~~Lr----~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v 469 (599)
+....+.++|+|. .+.......++++++|+|++++++.+..++..++++.|.+|++|+++||+++.+|||.+| .|
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G-~v 91 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTG-EV 91 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEE-EE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeC-EE
Confidence 4455566666542 344455557899999999999999999999999999999999999999999999999999 99
Q ss_pred EEe--cCccee---eeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 470 LSW--SSTSVF---TPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 470 ~i~--~~~g~~---~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+++ ..+|.. ..+++|++|||..+ +.+. ++..+++|.++|+++.+++++|.++++++|+
T Consensus 92 ~v~~~~~~g~~~~~~~~~~G~~fGe~~~---l~~~--------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~ 154 (187)
T 3gyd_A 92 NVIKDIPNKGIQTIAKVGAGAIIGEMSM---IDGM--------PRSASCVASLPTDFAVLSRDALYQLLANMPK 154 (187)
T ss_dssp EEEEEETTTEEEEEEEEETTCEESHHHH---HHCC--------CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHH
T ss_pred EEEEECCCCCeEEEEEccCCCeeeeHHH---hCCC--------CeeEEEEECCCeEEEEEcHHHHHHHHHHChH
Confidence 998 344533 23899999999976 3322 5688999999999999999999999999976
No 12
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.63 E-value=8.2e-16 Score=138.61 Aligned_cols=113 Identities=13% Similarity=0.240 Sum_probs=98.1
Q ss_pred chhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcc---e---eeeCCCCC
Q 007545 414 CLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTS---V---FTPRKDGE 485 (599)
Q Consensus 414 ~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g---~---~~~l~~G~ 485 (599)
..+.++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+| . ...+++|+
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~~~~~G~ 82 (142)
T 3mdp_A 4 SPERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEG-GVELFYSNGGAGSAANSTVCSVVPGA 82 (142)
T ss_dssp CTTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEES-CEEEECC---------CEEEEECTTC
T ss_pred cHHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeC-EEEEEEECCCCCceEeeeEEEecCCC
Confidence 35789999999999999999999999999999999999999999999999999 99998 2333 2 33489999
Q ss_pred eechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 486 FCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 486 ~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+|||..+ +.+ .++..+++|.++|+++.+++++|.++++++|+
T Consensus 83 ~fG~~~~---~~~--------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~ 124 (142)
T 3mdp_A 83 IFGVSSL---IKP--------YHYTSSARATKPVRVVDINGARLREMSENNQA 124 (142)
T ss_dssp EECGGGS---STT--------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred EechHHH---cCC--------CCceEEEEECCcEEEEEEeHHHHHHHHHHChH
Confidence 9999877 321 15688999999999999999999999999976
No 13
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.61 E-value=1.2e-15 Score=141.33 Aligned_cols=122 Identities=11% Similarity=0.149 Sum_probs=104.7
Q ss_pred HHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCccee---eeCC
Q 007545 407 FAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTSVF---TPRK 482 (599)
Q Consensus 407 ~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g~~---~~l~ 482 (599)
.+-......++++++|+|++++++.+..++..++...|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..++
T Consensus 29 ~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~g~~~~~~~~~ 107 (161)
T 3idb_B 29 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRG-TFDIYVKCDGVGRCVGNYD 107 (161)
T ss_dssp CHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEES-EEEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeC-EEEEEEcCCCCeEEEEEcC
Confidence 334444557899999999999999999999999999999999999999999999999999 99998 334433 2389
Q ss_pred CCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 483 DGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 483 ~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
+|++|||..+ +.+. +++.+++|+++|+++.|++++|.++++++|...
T Consensus 108 ~G~~fGe~~~---~~~~--------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~ 154 (161)
T 3idb_B 108 NRGSFGELAL---MYNT--------PRAATITATSPGALWGLDRVTFRRIIVKNNAKK 154 (161)
T ss_dssp SCCEECGGGG---TCCC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTS
T ss_pred CCCEechHHH---HcCC--------CcccEEEECCCeEEEEEeHHHHHHHHHHCHHHH
Confidence 9999999877 3221 568899999999999999999999999998743
No 14
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=3e-15 Score=153.02 Aligned_cols=131 Identities=11% Similarity=0.153 Sum_probs=116.5
Q ss_pred HHHhhCChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCc
Q 007545 396 QFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSST 475 (599)
Q Consensus 396 ~ll~~Lp~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~ 475 (599)
.-..+||+..|.+...+...+.++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+| .|++..++
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G-~v~v~~~g 97 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDG-KVEVTKEG 97 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEES-CEEEEETT
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEE-EEEEEECC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999 99997544
Q ss_pred ceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 476 SVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 476 g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
.....+.+|++|||.++ +.+ .++++|++|.++|+++.|++++|..++.++|.
T Consensus 98 ~~~~~~~~G~~fGe~~l---l~~--------~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~ 149 (299)
T 3shr_A 98 VKLCTMGPGKVFGELAI---LYN--------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL 149 (299)
T ss_dssp EEEEEECTTCEESCSGG---GTT--------TBCCSEEEESSCEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCeeeHhHH---hcC--------CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHH
Confidence 44455999999999977 221 16789999999999999999999999999975
No 15
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.59 E-value=6.8e-15 Score=132.12 Aligned_cols=110 Identities=18% Similarity=0.334 Sum_probs=98.4
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHh
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSW 494 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~ 494 (599)
.++++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+| .|+++..+ ...+++|++|||..+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~--~~~~~~G~~~G~~~~-- 84 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG-SVSVATPN--PVELGPGAFFGEMAL-- 84 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEES-CEEECSSS--CEEECTTCEECHHHH--
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEee-EEEEEeCC--cceECCCCEeeehHh--
Confidence 4679999999999999999999999999999999999999999999999999 99998443 335899999999976
Q ss_pred hhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 495 AVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 495 ~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+.+. ++..+++|.++|+++.+++++|.++++++|+
T Consensus 85 -~~~~--------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~ 119 (138)
T 1vp6_A 85 -ISGE--------PRSATVSAATTVSLLSLHSADFQMLCSSSPE 119 (138)
T ss_dssp -HHCC--------CCSSCEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred -ccCC--------CceeEEEECCCEEEEEECHHHHHHHHHHCHH
Confidence 3322 4578999999999999999999999999965
No 16
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.58 E-value=7.4e-16 Score=138.19 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=105.7
Q ss_pred ChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceeccc-CCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeee
Q 007545 402 PPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYT-QGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTP 480 (599)
Q Consensus 402 p~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~-~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~ 480 (599)
||+.|.+-......++++++|+|+.++++.+..++..++.+.|. +|++|+++||.++.+|||.+| .|+++..+|....
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~g~~~~ 80 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNG-TVEISHPDGKVEN 80 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBS-CEEEECSSSCEEE
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeC-EEEEEcCCCcEEE
Confidence 34444444444445678999999999999999999999999999 999999999999999999999 9999966676666
Q ss_pred CCCCCeechhhhHhhhccCCCCCCCcCCCceEE-EEeceeeeeEechHhHHHHHHhCCc
Q 007545 481 RKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTV-EAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 481 l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv-~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+++|++|||..+ +.+. ++..++ +|.++|+++.|++++|.+++++++.
T Consensus 81 l~~G~~fG~~~~---~~~~--------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 81 LFMGNSFGITPT---LDKQ--------YMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp ECTTCEESCCSS---SCCE--------ECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred ecCCCccChhHh---cCCC--------cceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 999999999876 2211 456677 9999999999999999999998876
No 17
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1.5e-14 Score=137.96 Aligned_cols=116 Identities=9% Similarity=0.138 Sum_probs=100.6
Q ss_pred cchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceeee---CCCCCee
Q 007545 413 LCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFTP---RKDGEFC 487 (599)
Q Consensus 413 l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~~---l~~G~~f 487 (599)
++..+++++|.|.+++++.++.++..++.+.|.+|++|+++||+++.+|||.+| .|+++ +.+|.... +++|++|
T Consensus 4 m~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G-~v~~~~~~~~G~e~~~~~~~~g~~~ 82 (194)
T 3dn7_A 4 MHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKG-CLRLFFIDEKGIEQTTQFAIENWWL 82 (194)
T ss_dssp CCHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEES-EEEEEEECTTSCEEEEEEEETTCEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecC-eEEEEEECCCCCEEEEEEccCCcEE
Confidence 345678889999999999999999999999999999999999999999999999 99998 44554433 8999999
Q ss_pred chh-hhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 488 GEE-LVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 488 GE~-~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
||. .+ +.+. ++..+++|+++|+++.+++++|.++++++|+..
T Consensus 83 ge~~~~---~~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 125 (194)
T 3dn7_A 83 SDYMAF---QKQQ--------PADFYIQSVENCELLSITYTEQENLFERIPALE 125 (194)
T ss_dssp CCHHHH---HHTC--------BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHH
T ss_pred eehHHH---hcCC--------CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHH
Confidence 987 44 2211 568899999999999999999999999998733
No 18
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.57 E-value=2.3e-14 Score=138.78 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=95.9
Q ss_pred hcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeechhhh
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGEELV 492 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE~~l 492 (599)
|+++|+|++++++.+..++..++++.|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||..+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~ 79 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASG-KVRLFRTHLGGQERTLALLGPGELFGEMSL 79 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEES-CEEEEEECSSSCEEEEEEECTTCEECHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeC-EEEEEEECCCCCEEEEEEecCCCEEeehhh
Confidence 5789999999999999999999999999999999999999999999999 99998 345543 33899999999866
Q ss_pred HhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 493 SWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 493 ~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
+.+. ++..+++|.++|+++.+++++|.++++++|+..
T Consensus 80 ---~~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 116 (216)
T 4ev0_A 80 ---LDEG--------ERSASAVAVEDTELLALFREDYLALIRRLPLVA 116 (216)
T ss_dssp ---HHCC--------BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ---cCCC--------CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHH
Confidence 3322 568899999999999999999999999998833
No 19
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.57 E-value=1.3e-14 Score=132.51 Aligned_cols=113 Identities=12% Similarity=0.249 Sum_probs=97.2
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeech
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGE 489 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE 489 (599)
.++++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~~G~~~G~ 89 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISG-CVKIYRLTPEGQEKILEVTNERNTFAE 89 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEES-CEEEECCCC-----CCEEECTTEEESG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeC-EEEEEEECCCCCEEEEEEccCCCeecc
Confidence 4578999999999999999999999999999999999999999999999999 99998 334433 33899999999
Q ss_pred hhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 490 ELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 490 ~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
..+ +.+ .+++..+++|.++|+++.+++++|.++++++|+
T Consensus 90 ~~~---~~~-------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~ 128 (154)
T 2z69_A 90 AMM---FMD-------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP 128 (154)
T ss_dssp GGG---GSS-------CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHH
T ss_pred Hhh---ccC-------CCCCceEEEEccceEEEEECHHHHHHHHHHChH
Confidence 977 321 122688999999999999999999999999965
No 20
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.57 E-value=8.2e-15 Score=134.70 Aligned_cols=113 Identities=16% Similarity=0.243 Sum_probs=100.3
Q ss_pred chhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhH
Q 007545 414 CLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVS 493 (599)
Q Consensus 414 ~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~ 493 (599)
..++++++|+|++++++.+..++..++...|.+||+|+++||+++.+|||.+| .|+++.++.....+++|++|||..+
T Consensus 36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~~~~~~~~G~~fGe~~~- 113 (154)
T 3pna_A 36 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG-EMDVYVNNEWATSVGEGGSFGELAL- 113 (154)
T ss_dssp HHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEES-CEEEEETTEEEEEECTTCEECCHHH-
T ss_pred HHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEec-EEEEEECCEEEEEecCCCEeeehHh-
Confidence 45688999999999999999999999999999999999999999999999999 9999964444445999999999977
Q ss_pred hhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 494 WAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 494 ~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+.+. ++.++++|+++|+++.|++++|.++++++|.
T Consensus 114 --~~~~--------~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~ 148 (154)
T 3pna_A 114 --IYGT--------PRAATVKAKTNVKLWGIDRDSYRRILMGSTL 148 (154)
T ss_dssp --HHCC--------CCSSEEEESSCEEEEEEEHHHHHHHTHHHHH
T ss_pred --hcCC--------CcceEEEECcceEEEEEeHHHHHHHHHhChH
Confidence 3222 5588999999999999999999999999855
No 21
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.53 E-value=6e-14 Score=136.97 Aligned_cols=116 Identities=12% Similarity=0.238 Sum_probs=100.8
Q ss_pred chhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeec
Q 007545 414 CLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCG 488 (599)
Q Consensus 414 ~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fG 488 (599)
..++++++|+|++++++.++.++..+++..|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++||
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~G~~~~~~~~~~g~~~G 85 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISG-CVKIYRLTPEGQEKILEVTNERNTFA 85 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEES-CEECCBCCGGGCCBCCCEECTTEEES
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeC-EEEEEEECCCCCEEEEEEcCCCCEee
Confidence 35789999999999999999999999999999999999999999999999999 99998 334533 2389999999
Q ss_pred hhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 489 EELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 489 E~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
|..+ +.+. |.+..+++|.++|+++.+++++|..+++++|+..
T Consensus 86 ~~~~---~~~~-------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 127 (227)
T 3dkw_A 86 EAMM---FMDT-------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLA 127 (227)
T ss_dssp CTTT---TTTC-------SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHH
T ss_pred eHHh---cCCC-------CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHH
Confidence 9876 2211 1268899999999999999999999999999843
No 22
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.52 E-value=2.8e-14 Score=139.60 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=99.9
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeech
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGE 489 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE 489 (599)
.++++++|+|++++++.++.++..++...|.+||+|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~~G~~~G~ 83 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISG-KVKIGRRAPDGRENLLTIMGPSDMFGE 83 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEES-CEEEEEECTTSCEEEEEEECTTCEESC
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEee-EEEEEEECCCCcEEEEEEecCCCEEee
Confidence 4678999999999999999999999999999999999999999999999999 99998 334543 23899999999
Q ss_pred hhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 490 ELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 490 ~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
..+ +.+. ++..+++|+++|+++.+++++|.++++++|+.
T Consensus 84 ~~~---~~~~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 122 (227)
T 3d0s_A 84 LSI---FDPG--------PRTSSATTITEVRAVSMDRDALRSWIADRPEI 122 (227)
T ss_dssp HHH---HSCS--------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHH
T ss_pred HHH---cCCC--------CceeEEEEcccEEEEEEeHHHHHHHHHHChHH
Confidence 876 3221 56889999999999999999999999999883
No 23
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.52 E-value=8e-14 Score=136.66 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=99.9
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeech
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGE 489 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE 489 (599)
.++++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~~g~~~G~ 83 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTG-VVRVSRVSLGGRERVLGDIYAPGVVGE 83 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSS-EEEEEEECC--CEEEEEEEESSEEEST
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEec-EEEEEEECCCCceEEEEecCCCCEEee
Confidence 5689999999999999999999999999999999999999999999999999 99998 345543 33899999999
Q ss_pred hhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 490 ELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 490 ~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
..+ +.+ .++..+++|+++|+++.+++++|.++++++|+..
T Consensus 84 ~~~---~~~--------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 123 (231)
T 3e97_A 84 TAV---LAH--------QERSASVRALTPVRTLMLHREHFELILRRHPRVL 123 (231)
T ss_dssp TTT---TCC--------CCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHH
T ss_pred HHH---hCC--------CCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHH
Confidence 977 322 2568999999999999999999999999998833
No 24
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.5e-14 Score=139.33 Aligned_cols=112 Identities=9% Similarity=0.166 Sum_probs=100.8
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHh
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSW 494 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~ 494 (599)
.+.++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|+|.+| .|+++.++.....+++|++|||.++
T Consensus 6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~v~~~~~~~~~~~~g~~fGe~~l-- 82 (246)
T 3of1_A 6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKG-TVDFYVNDNKVNSSGPGSSFGELAL-- 82 (246)
T ss_dssp HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEEC-CEEEESTTSCCEEECTTCEECHHHH--
T ss_pred HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEee-EEEEEECCEEEEecCCCCeeehhHH--
Confidence 5678999999999999999999999999999999999999999999999999 9999954444455999999999877
Q ss_pred hhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 495 AVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 495 ~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+.+. ++++|++|.++|+++.|++++|..++.++|.
T Consensus 83 -~~~~--------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~ 117 (246)
T 3of1_A 83 -MYNS--------PRAATVVATSDCLLWALDRLTFRKILLGSSF 117 (246)
T ss_dssp -HHTC--------CCSSEEEESSCEEEEEEEHHHHHHTTTTTTS
T ss_pred -hcCC--------CCCcEEEECCCeEEEEEEhHHHHHHHHHhHH
Confidence 3221 5689999999999999999999999999987
No 25
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.51 E-value=1.7e-13 Score=133.14 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=97.7
Q ss_pred hhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceee---eCCCCCe--ec
Q 007545 416 PVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFT---PRKDGEF--CG 488 (599)
Q Consensus 416 ~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~--fG 488 (599)
++++++|+|++++++.++.++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|... .+++|++ ||
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~~G~~~~~~~~~~G~~~~~g 81 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSG-QLRTYILSDEGREITLYRLFDMDMCLLS 81 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEES-CEEEEEECTTSCEEEEEEECTTCEESGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEec-eEEEEEECCCCCEEEEEecCCCCeeehh
Confidence 578999999999999999999999999999999999999999999999999 99998 4455433 3899999 68
Q ss_pred hhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 489 EELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 489 E~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
|..+ +.+ .++..+++|+++|+++.+++++|.++++++|+.
T Consensus 82 ~~~~---~~~--------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~ 121 (220)
T 3dv8_A 82 ASCI---MRS--------IQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPV 121 (220)
T ss_dssp GGGG---CTT--------CCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHH
T ss_pred HHHH---hCC--------CCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHH
Confidence 8876 322 156889999999999999999999999999883
No 26
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.51 E-value=1.3e-13 Score=134.89 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=87.5
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeech
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGE 489 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE 489 (599)
...+++.|+|.+++++.++.++..++...|.+||+|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~G~~~~~~~~~~g~~~G~ 88 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISG-SVSIIAEEDDDRELVLGYFGSGEFVGE 88 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEES-CEEEEEECTTSCEEEEEEECTTCEESC
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEee-EEEEEEECCCCCEEEEEEecCCCEEEe
Confidence 4578899999999999999999999999999999999999999999999999 99998 444543 23899999999
Q ss_pred hhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhC
Q 007545 490 ELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQC 536 (599)
Q Consensus 490 ~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~f 536 (599)
..+ +.+ .++++.+++|+++|+++.+++++|.++++++
T Consensus 89 ~~~---~~~-------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 125 (230)
T 3iwz_A 89 MGL---FIE-------SDTREVILRTRTQCELAEISYERLQQLFQTS 125 (230)
T ss_dssp GGG---TSC-------CSBCCSEEEESSCEEEEEEEHHHHHHHHHTT
T ss_pred hhh---hcC-------CCCceeEEEEcCcEEEEEEeHHHHHHHHHHh
Confidence 977 221 1256889999999999999999999999999
No 27
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.50 E-value=3.3e-13 Score=123.73 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHh----hhcHHHHHHhhHhH
Q 007545 290 FLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQ------FLQHI----NGNSERKIRKSSQM 358 (599)
Q Consensus 290 Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~------il~~~----~~~~~~~~~k~~~~ 358 (599)
|..|+||+++|+| +||||++|.+..+++++++.+++|++++++.+|++++ +.+.. +....+..++ +
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---l 129 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEK---L 129 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 6779999999999 9999999999999999999999999999999999986 33333 3444445555 9
Q ss_pred HHHHHHHHhCCCCHHHHHH
Q 007545 359 QEVEMWRLFHVLSDNLKQK 377 (599)
Q Consensus 359 ~~i~~~m~~~~lp~~L~~r 377 (599)
++++++|++++.|++|+.|
T Consensus 130 ~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 130 EAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHTTC------
T ss_pred HHHHHHHHhcCCCcCCCCC
Confidence 9999999999999999876
No 28
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.50 E-value=1.2e-13 Score=135.99 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=100.4
Q ss_pred chhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeec
Q 007545 414 CLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCG 488 (599)
Q Consensus 414 ~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fG 488 (599)
..++++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDG-WVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEES-EEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEee-EEEEEEECCCCCEEEEEEeCCCCEec
Confidence 45789999999999999999999999999999999999999999999999999 99998 345543 2389999999
Q ss_pred hhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 489 EELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 489 E~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
|..+ +.+. ++..+++|+++|+++.+++++|..+++++|+
T Consensus 88 ~~~~---~~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 126 (237)
T 3fx3_A 88 EAVA---LRNT--------PYPVSAEAVTPCEVMHIPSPVFVSLMRRDPE 126 (237)
T ss_dssp HHHH---HHTC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred hHHH---hcCC--------CCCceEEECCceEEEEEcHHHHHHHHHHCHH
Confidence 9977 3222 5688999999999999999999999999987
No 29
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.50 E-value=1.8e-13 Score=134.58 Aligned_cols=113 Identities=13% Similarity=0.237 Sum_probs=98.6
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhh--CceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCee
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYH--FNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFC 487 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~--l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~f 487 (599)
.+.++++|+|++++++.++.++.. ++...|.+||+|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G-~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKG-EISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEES-EEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEee-EEEEEEECCCCCEEEEEEccCCCee
Confidence 456889999999999999999998 9999999999999999999999999999 99997 334433 338999999
Q ss_pred chhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 488 GEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 488 GE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
||..+ +.+. +++..+++|+++|+++.+++++|.++++++|+
T Consensus 96 G~~~~---~~~~-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~ 136 (232)
T 1zyb_A 96 EPQSL---FGMN-------TNYASSYVAHTEVHTVCISKAFVLSDLFRYDI 136 (232)
T ss_dssp CGGGG---SSSC-------CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHH
T ss_pred eehHH---hCCC-------CCCceEEEEccceEEEEEEHHHHHHHhccCHH
Confidence 99977 3221 23688999999999999999999999999966
No 30
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.49 E-value=1.2e-13 Score=143.44 Aligned_cols=113 Identities=14% Similarity=0.226 Sum_probs=100.1
Q ss_pred cchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcc--eeeeCCCCCeec
Q 007545 413 LCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTS--VFTPRKDGEFCG 488 (599)
Q Consensus 413 l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g--~~~~l~~G~~fG 488 (599)
...++++++|+|++++++.+..++..++.+.|.+||+|+++||+++.+|||.+| .|+++ +.+| ....+.+|++||
T Consensus 10 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~G~~fG 88 (333)
T 4ava_A 10 ARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSG-SAEVSHVGDDGVAIIARALPGMIVG 88 (333)
T ss_dssp CCHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEEC-CEEEEEECTTCCEEEEEECTTCEES
T ss_pred hhHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEee-EEEEEEECCCCcEEEEEecCCCEee
Confidence 445789999999999999999999999999999999999999999999999999 99998 3344 333499999999
Q ss_pred hhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 489 EELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 489 E~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
|.++ +.+. ++++|++|+++|+++.|++++|.+++ ++|+
T Consensus 89 e~~l---~~~~--------~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~ 126 (333)
T 4ava_A 89 EIAL---LRDS--------PRSATVTTIEPLTGWTGGRGAFATMV-HIPG 126 (333)
T ss_dssp HHHH---HHTC--------BCSSEEEESSCEEEEEECHHHHHHHH-HSTT
T ss_pred HHHh---cCCC--------CceEEEEEecCEEEEEEcHHHHHHHH-hChH
Confidence 9977 3221 66899999999999999999999999 8987
No 31
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.8e-14 Score=137.62 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=100.9
Q ss_pred cchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCc-ceeeeCCCCCeechhh
Q 007545 413 LCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSST-SVFTPRKDGEFCGEEL 491 (599)
Q Consensus 413 l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~-g~~~~l~~G~~fGE~~ 491 (599)
+...+++++|+|+++++..+..++..++.+.|.+|+.|+++||+++.+|||.+| .|+++..+ +....+++|++|||..
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G-~v~v~~~~~~~~~~l~~g~~fGe~~ 200 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYG-AVDVSKKGQGVINKLKDHDYFGEVA 200 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEEC-EEEEEETTTEEEEEEETTCEECHHH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEec-EEEEEEcCCceEEEcCCCCcccHHH
Confidence 345678889999999999999999999999999999999999999999999999 99999433 3455599999999997
Q ss_pred hHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 492 VSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 492 l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+ +.+. ++++|++|.++|+++.|++++|.+++..+|+
T Consensus 201 ~---~~~~--------~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~ 236 (246)
T 3of1_A 201 L---LNDL--------PRQATVTATKRTKVATLGKSGFQRLLGPAVD 236 (246)
T ss_dssp H---HHTC--------BCSSEEEESSCEEEEEEEHHHHHHHCTTHHH
T ss_pred H---hCCC--------CcccEEEECCCEEEEEEeHHHHHHHhccHHH
Confidence 7 3222 5689999999999999999999999999977
No 32
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.47 E-value=5.6e-13 Score=130.68 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=95.0
Q ss_pred hcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcce---eeeCCCCCeechhhh
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSV---FTPRKDGEFCGEELV 492 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~---~~~l~~G~~fGE~~l 492 (599)
..++|+|++++++.++.++..++...|.+||+|+++||+++.+|||.+| .|+++ ..+|. ...+++|++|||..+
T Consensus 12 ~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G-~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 12 HLLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEG-KIKILREGVYGRFHISRIVKPGQFFGMRPY 90 (232)
T ss_dssp GGSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEES-CEEEEC-----CCCEEEEECTTCEESHHHH
T ss_pred ccccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeC-EEEEEEECCCCCEEEEEEeCCCCEeeeehh
Confidence 3468999999999999999999999999999999999999999999999 99998 33343 234899999999976
Q ss_pred HhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 493 SWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 493 ~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
+.+. ++..+++|+++|+++.+++++|.++++++|+..
T Consensus 91 ---~~~~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 127 (232)
T 2gau_A 91 ---FAEE--------TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFC 127 (232)
T ss_dssp ---HHTS--------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ---hCCC--------CcceEEEEecceEEEEEEHHHHHHHHHHCHHHH
Confidence 3322 468899999999999999999999999998733
No 33
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.46 E-value=6.8e-14 Score=126.44 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHhhHhHHHHHHHHHh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERKIRKSSQMQEVEMWRLF 367 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~~~k~~~~~~i~~~m~~ 367 (599)
.|..|+||+++||| |||||++|.|..|++++++.|++|++++|+++|.+++.+.+...+..+.+.. .+..+...+.
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 119 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRA---NKITQLISET 119 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 37889999999999 9999999999999999999999999999999999999887766555444333 3333334445
Q ss_pred CCCCHHHHHHHHHHHH
Q 007545 368 HVLSDNLKQKIRKYCQ 383 (599)
Q Consensus 368 ~~lp~~L~~rVr~y~~ 383 (599)
.+++++....+++|.+
T Consensus 120 ~~l~~~~i~~l~~~l~ 135 (137)
T 4h33_A 120 PDLTKEEIAVVEQFLT 135 (137)
T ss_dssp ----------------
T ss_pred hhccHHHHHHHHHHHh
Confidence 5677777777777765
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.46 E-value=2e-13 Score=139.35 Aligned_cols=118 Identities=17% Similarity=0.304 Sum_probs=102.2
Q ss_pred chhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEec---Ccce---eeeCCCCCee
Q 007545 414 CLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWS---STSV---FTPRKDGEFC 487 (599)
Q Consensus 414 ~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~---~~g~---~~~l~~G~~f 487 (599)
..++++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+| .|+++. .+|. ...+++|++|
T Consensus 155 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G-~v~~~~~~~~~g~~~~~~~l~~G~~f 233 (299)
T 3shr_A 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKG-KVNVTREDSPNEDPVFLRTLGKGDWF 233 (299)
T ss_dssp HHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEES-EEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred HHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEee-EEEEEEecCCCCcceEEEEcCCCCEe
Confidence 46678899999999999999999999999999999999999999999999999 999982 2343 2339999999
Q ss_pred chhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhchh
Q 007545 488 GEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQL 543 (599)
Q Consensus 488 GE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~l 543 (599)
||.++ +.+ .++++|++|.++|+++.|++++|.+++.++|+....+
T Consensus 234 Ge~~l---l~~--------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~ 278 (299)
T 3shr_A 234 GEKAL---QGE--------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKA 278 (299)
T ss_dssp CGGGG---SSS--------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHH
T ss_pred ChHHH---hCC--------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHH
Confidence 99977 322 1568999999999999999999999999998844433
No 35
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.45 E-value=1.7e-13 Score=126.23 Aligned_cols=64 Identities=6% Similarity=0.150 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 007545 288 QKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNSERK 351 (599)
Q Consensus 288 ~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~~~~ 351 (599)
..|..|+||+++||| +||||++|.+..+++++++.|++|.+++|+.+|.+++.+.+...++++.
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~ 147 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGH 147 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999 9999999999999999999999999999999999999988766554433
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.44 E-value=4.4e-13 Score=136.10 Aligned_cols=117 Identities=15% Similarity=0.251 Sum_probs=100.4
Q ss_pred chhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcc----eeeeCCCCCee
Q 007545 414 CLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTS----VFTPRKDGEFC 487 (599)
Q Consensus 414 ~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g----~~~~l~~G~~f 487 (599)
...+++++++|+++++..+..++..++...|.+|++|+++||+++.+|+|.+| .|++. ..+| ....+++|++|
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEG-SAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEE-EEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeC-EEEEEEecCCCCccEEEEEeCCCCEe
Confidence 34567888999999999999999999999999999999999999999999999 99998 2222 23349999999
Q ss_pred chhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhch
Q 007545 488 GEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQ 542 (599)
Q Consensus 488 GE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~ 542 (599)
||..+ +.+ .++++|++|.++|+++.|++++|.+++.++|+..++
T Consensus 234 Ge~~l---l~~--------~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~ 277 (291)
T 2qcs_B 234 GEIAL---LMN--------RPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 277 (291)
T ss_dssp CSGGG---TCC--------CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTT
T ss_pred cHHHH---cCC--------CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHH
Confidence 99977 322 156899999999999999999999999999884433
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.44 E-value=4.5e-13 Score=136.02 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=102.2
Q ss_pred hhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechh
Q 007545 411 HELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEE 490 (599)
Q Consensus 411 ~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~ 490 (599)
.....+.++++|+|++++++.+..++..++...|.+|++|+++||.++.+|+|.+| .|+++.+......+++|++|||.
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~g~~~~~l~~G~~fGe~ 112 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG-EMDVYVNNEWATSVGEGGSFGEL 112 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEEC-CEEEEETTEEEEEECTTCEECGG
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeee-EEEEEECCeEEEEcCCCCccchH
Confidence 34457789999999999999999999999999999999999999999999999999 99998633344449999999998
Q ss_pred hhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 491 LVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 491 ~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
++ +.+ .++++|++|.++|+++.|++++|..++.++|.
T Consensus 113 ~l---~~~--------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~ 149 (291)
T 2qcs_B 113 AL---IYG--------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTL 149 (291)
T ss_dssp GG---TCC--------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHH
T ss_pred HH---hcC--------CCCceEEEECCCEEEEEEEhHHHHHHHhhhHH
Confidence 77 221 16689999999999999999999999999977
No 38
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.42 E-value=1.1e-12 Score=126.31 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=90.5
Q ss_pred CcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceee---eCCCCCeechhhhHhhh
Q 007545 422 PMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFT---PRKDGEFCGEELVSWAV 496 (599)
Q Consensus 422 plF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~fGE~~l~~~l 496 (599)
++++.++++.++.++..++...|.+|++|+++||+++.+|||.+| .|+++ ..+|... .+++|++|||..+ +
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~---~ 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKG-SVAVLIKDEEGKEMILSYLNQGDFIGELGL---F 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEES-EEEEEEECTTCCEEEEEEEETTCEESCTTT---T
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeC-EEEEEEECCCCCEEEEEEcCCCCEeeeHHH---h
Confidence 467789999999999999999999999999999999999999999 99998 4455433 3899999999976 2
Q ss_pred ccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhc
Q 007545 497 DQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDG 541 (599)
Q Consensus 497 ~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~ 541 (599)
.+ .+++..+++|+++|+++.+++++|.++++++|+...
T Consensus 78 ~~-------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (210)
T 3ryp_A 78 EE-------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 115 (210)
T ss_dssp ST-------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred cC-------CCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHH
Confidence 21 125688999999999999999999999999988433
No 39
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.39 E-value=8.7e-13 Score=128.32 Aligned_cols=107 Identities=11% Similarity=0.173 Sum_probs=95.3
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCccee---eeCCCCCeechh
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTSVF---TPRKDGEFCGEE 490 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g~~---~~l~~G~~fGE~ 490 (599)
..+++++|+|++++++.+..++..++...|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSG-RVRVYLAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEES-EEEEEEECSSCEEEEEEEETTCEEES-
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEec-EEEEEECCCCCEEEEEEcCCCCEeCC-
Confidence 4678999999999999999999999999999999999999999999999999 99986 444543 33899999998
Q ss_pred hhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 491 LVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 491 ~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
- +..+++|+++|+++.+++++|.++++++|+..
T Consensus 81 -~----------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 113 (220)
T 2fmy_A 81 -H----------------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFS 113 (220)
T ss_dssp -C----------------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHH
T ss_pred -c----------------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHH
Confidence 1 25789999999999999999999999999833
No 40
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=1.4e-12 Score=141.91 Aligned_cols=120 Identities=11% Similarity=0.151 Sum_probs=100.3
Q ss_pred chhhhcCCCcccCCCHHHHHHHHhhCce-ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecC-cceeeeCCCCCeechhh
Q 007545 414 CLPVLKEVPMLQRMDEQRMNAILYHFNL-VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSS-TSVFTPRKDGEFCGEEL 491 (599)
Q Consensus 414 ~~~~l~~vplF~~~~~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~-~g~~~~l~~G~~fGE~~ 491 (599)
..+.++++|+|++++++.+..++..++. ..|.+|++|+++||.++.+|||.+| .|+++.. ++....+++|++|||..
T Consensus 335 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G-~v~v~~~~~~~~~~l~~G~~fGe~~ 413 (469)
T 1o7f_A 335 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKG-SVNVVIYGKGVVCTLHEGDDFGKLA 413 (469)
T ss_dssp HHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEES-EEEEEETTTEEEEEEETTCEECGGG
T ss_pred HHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEe-EEEEEEcCCeeEEEecCCCEEEEeh
Confidence 3567899999999999999999999985 4899999999999999999999999 9999833 34555599999999997
Q ss_pred hHhhhccCCCCCCCcCCCceEEEEec-eeeeeEechHhHHHHHHhCCchhchhhH
Q 007545 492 VSWAVDQQSDSSTVFPRSTRTVEAVT-QVDAFSIEAGDLKEFVNQCRQPDGQLPK 545 (599)
Q Consensus 492 l~~~l~~~~~~~~~~~~s~~tv~A~~-~~el~~L~~~dl~~l~~~fp~~~~~l~~ 545 (599)
+ +.+ .++++|++|++ +|+++.|++++|.+++.++|+...++..
T Consensus 414 l---l~~--------~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 414 L---VND--------APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp G---TCC--------SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred h---hcC--------CCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 7 322 15789999998 7999999999999999999995554443
No 41
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=1.5e-12 Score=141.53 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=111.0
Q ss_pred hCChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcc-
Q 007545 400 DLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTS- 476 (599)
Q Consensus 400 ~Lp~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g- 476 (599)
..|+..|.+-......+.++++|+|++++++.+..++..++...|.+|++|+++||+++.+|+|.+| .|+++ ..+|
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G-~v~v~~~~~~g~ 104 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAG-SLDVKVSETSSH 104 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEES-CEEEEECSSSCG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEee-EEEEEEecCCCC
Confidence 3578888888788888999999999999999999999999999999999999999999999999999 99998 3333
Q ss_pred ----eeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 477 ----VFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 477 ----~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
....+++|++|||..+ ... ++++|++|.++|+++.|++++|..++.++|+
T Consensus 105 ~~~~~~~~~~~G~~fGe~~l------~~~------~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 105 QDAVTICTLGIGTAFGESIL------DNT------PRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp GGCEEEEEECTTCEECGGGG------GTC------BCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred CcceEEEEccCCCCcchhhh------CCC------CccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 2233999999999763 111 5689999999999999999999999999998
No 42
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.38 E-value=3.4e-13 Score=144.74 Aligned_cols=119 Identities=11% Similarity=0.175 Sum_probs=103.6
Q ss_pred HHHhhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCcce---eeeCCC
Q 007545 408 AMKHELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTSV---FTPRKD 483 (599)
Q Consensus 408 ~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g~---~~~l~~ 483 (599)
+-......+.++++|+|++++++.+..|+..++.+.|.+|++|+++||.++.+|+|.+| .|+++ ..+|. ...+.+
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG-~v~v~~~~~G~~~~v~~l~~ 215 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRG-TFDIYVKCDGVGRCVGNYDN 215 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEC-EEEEEEECSSCEEEEEEEES
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEee-EEEEEEecCCCEEEEEEecC
Confidence 33444557889999999999999999999999999999999999999999999999999 99998 33443 333999
Q ss_pred CCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 484 GEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 484 G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
|++|||.++ +.. .++++|++|.++|+++.|++++|..++.++|.
T Consensus 216 G~~fGe~al---l~~--------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~ 259 (416)
T 3tnp_B 216 RGSFGELAL---MYN--------TPKAATITATSPGALWGLDRVTFRRIIVKNNA 259 (416)
T ss_dssp CCEECGGGG---TSC--------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred CCEEeeHHH---hcC--------CCcccEEEEccCeEEEEEeehhhhhhhhcchh
Confidence 999999977 321 16789999999999999999999999999887
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.38 E-value=6.5e-13 Score=140.91 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=102.4
Q ss_pred hcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhh
Q 007545 412 ELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEEL 491 (599)
Q Consensus 412 ~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~ 491 (599)
....+.++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+| .|+++.++.....+++|++|||.+
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G-~v~v~~~~~~v~~l~~G~~fGe~a 204 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQG-EVDVYVNGEWVTNISEGGSFGELA 204 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSS-EEEEEETTEEEEEEESSCCBCGGG
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEee-EEEEEECCeEeeeCCCCCEEEchH
Confidence 3446789999999999999999999999999999999999999999999999999 999996444455599999999997
Q ss_pred hHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 492 VSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 492 l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
+ +.+ .++++|++|.++|+++.|++++|..++.++|.
T Consensus 205 l---l~~--------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~ 240 (381)
T 4din_B 205 L---IYG--------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTL 240 (381)
T ss_dssp G---TSC--------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHH
T ss_pred H---hcC--------CCcceEEEECCCEEEEEEchHHHHHhhhhhhH
Confidence 7 321 16789999999999999999999999999865
No 44
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.38 E-value=3.4e-12 Score=122.57 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=87.8
Q ss_pred CCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeechhhhHhhhccCCC
Q 007545 427 MDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGEELVSWAVDQQSD 501 (599)
Q Consensus 427 ~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE~~l~~~l~~~~~ 501 (599)
++++.++.++..++...|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||..+ +.+..
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~---~~~~~- 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKG-SVTILIEDDDGREMIIGYLNSGDFFGELGL---FEKEG- 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEES-EEEEEEECTTSCEEEEEEEETTCEESCTTT---CC----
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeC-EEEEEEECCCCCEEEEEEcCCCCCcccHHH---hcCCC-
Confidence 5889999999999999999999999999999999999999 99998 444543 23899999999876 22110
Q ss_pred CCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 502 SSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 502 ~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
..+++..+++|+++|+++.+++++|.++++++|+.
T Consensus 76 ---~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 110 (207)
T 2oz6_A 76 ---SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEI 110 (207)
T ss_dssp -----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHH
T ss_pred ---CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHH
Confidence 00045789999999999999999999999999873
No 45
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.36 E-value=3.9e-12 Score=127.47 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=88.1
Q ss_pred cCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeechhhhHhhhccC
Q 007545 425 QRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGEELVSWAVDQQ 499 (599)
Q Consensus 425 ~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE~~l~~~l~~~ 499 (599)
..++++.++.++..+++..|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|||..+ +.+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G-~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~---~~~- 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKG-SVAVLIKDEEGKEMILSYLNQGDFIGELGL---FEE- 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEEC-EEEEEEECTTCCEEEEEEEETTCEESCTTT---TST-
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeC-EEEEEEECCCCCEEEEEEcCCCCEEeehHH---hCC-
Confidence 458999999999999999999999999999999999999999 99998 345543 23899999999976 221
Q ss_pred CCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 500 SDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 500 ~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
.++++.+++|+++|+++.+++++|.++++++|+..
T Consensus 130 ------~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~ 164 (260)
T 3kcc_A 130 ------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDIL 164 (260)
T ss_dssp ------TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHH
T ss_pred ------CCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHH
Confidence 12568899999999999999999999999998843
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.36 E-value=9.9e-13 Score=139.51 Aligned_cols=115 Identities=14% Similarity=0.257 Sum_probs=100.1
Q ss_pred cchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecC--cc----eeeeCCCCCe
Q 007545 413 LCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSS--TS----VFTPRKDGEF 486 (599)
Q Consensus 413 l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~--~g----~~~~l~~G~~ 486 (599)
++..+++++++|.++++..+..++..++...|.+|++|+++||.++.+|||.+| .|+++.. +| ....+++|++
T Consensus 245 ~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G-~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEG-TASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEES-CEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeC-EEEEEEecCCCCceEEEEEeCCCCE
Confidence 345678889999999999999999999999999999999999999999999999 9999821 22 2334999999
Q ss_pred echhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 487 CGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 487 fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
|||.++ +.+. ++++|++|.++|+++.|++++|.+++..+|+.
T Consensus 324 fGe~al---l~~~--------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i 365 (381)
T 4din_B 324 FGEIAL---LLNR--------PRAATVVARGPLKCVKLDRPRFERVLGPCSEI 365 (381)
T ss_dssp ECTTGG---GSCC--------BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHH
T ss_pred echHHH---hCCC--------CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHH
Confidence 999987 3221 67899999999999999999999999999873
No 47
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.35 E-value=1.2e-12 Score=127.50 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=94.0
Q ss_pred hhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCccee---eeCCCCCeechhhh
Q 007545 417 VLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTSVF---TPRKDGEFCGEELV 492 (599)
Q Consensus 417 ~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g~~---~~l~~G~~fGE~~l 492 (599)
+++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++|| -
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~G~~~~~~~~~~G~~fG---~ 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDG-RLRVYLVGEEREISLFYLTSGDMFC---M 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEES-EEEEEEEETTEEEEEEEEETTCEEE---S
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEec-EEEEEECCCCCEEEEEEcCCCCEec---C
Confidence 36789999999999999999999999999999999999999999999999 99997 334443 2389999999 1
Q ss_pred HhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchhch
Q 007545 493 SWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPDGQ 542 (599)
Q Consensus 493 ~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~~~ 542 (599)
++..+++|+++|+++.+++++|.++++++|+....
T Consensus 77 ---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~ 111 (222)
T 1ft9_A 77 ---------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWG 111 (222)
T ss_dssp ---------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHH
T ss_pred ---------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHH
Confidence 45789999999999999999999999999884333
No 48
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.35 E-value=2.1e-12 Score=138.57 Aligned_cols=117 Identities=11% Similarity=0.285 Sum_probs=101.4
Q ss_pred hhcchhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEec--Cc------ce---ee
Q 007545 411 HELCLPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWS--ST------SV---FT 479 (599)
Q Consensus 411 ~~l~~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~--~~------g~---~~ 479 (599)
..++..+++++++|+.+++..+..++..++...|.+|++|+++||.++.+|||.+| .|+++. .+ |. ..
T Consensus 262 ~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG-~v~v~~~~~~~~~~~~g~~~~l~ 340 (416)
T 3tnp_B 262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESG-EVKITMKRKGKSEVEENGAVEIA 340 (416)
T ss_dssp SSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEE-EEEEECC------------CEEE
T ss_pred HHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeC-EEEEEEecCCcccccCCceeEEE
Confidence 34667889999999999999999999999999999999999999999999999999 999982 21 32 23
Q ss_pred eCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 480 PRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 480 ~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
.+++|++|||.++ +... ++++||+|+++|+++.|++++|.+++..+|+.
T Consensus 341 ~l~~G~~fGE~al---l~~~--------~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i 389 (416)
T 3tnp_B 341 RCFRGQYFGELAL---VTNK--------PRAASAHAIGTVKCLAMDVQAFERLLGPCMEI 389 (416)
T ss_dssp EECTTCEESGGGG---TCCS--------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHH
T ss_pred EeCCCCEecHHHH---hCCC--------CceeEEEEcCCeEEEEEEHHHHHHHhcchHHH
Confidence 4999999999987 3221 67899999999999999999999999999873
No 49
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.32 E-value=7.2e-12 Score=110.84 Aligned_cols=59 Identities=7% Similarity=0.156 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007545 288 QKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHING 346 (599)
Q Consensus 288 ~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~ 346 (599)
..|..|+||+++|+| +||||++|.+..+++++++.+++|..++|+.+|++++.+++...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999 99999999999999999999999999999999999999876544
No 50
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.30 E-value=1.2e-11 Score=111.97 Aligned_cols=90 Identities=6% Similarity=0.145 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcH-HHHHHhhHhHHHHHHHH
Q 007545 288 QKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNS-ERKIRKSSQMQEVEMWR 365 (599)
Q Consensus 288 ~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~-~~~~~k~~~~~~i~~~m 365 (599)
..|..|+||+++|+| +||||++|.+..+++++++.+++|++++++++|.+++.+.+...+. +++..+ .+.....+
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~ 115 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRH---SEKAAEEA 115 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHH---HHHHHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHH
Confidence 358899999999999 9999999999999999999999999999999999998775544332 333333 33333333
Q ss_pred HhCCCCHHHHHHHHHH
Q 007545 366 LFHVLSDNLKQKIRKY 381 (599)
Q Consensus 366 ~~~~lp~~L~~rVr~y 381 (599)
.++++ +++.+|+.+.
T Consensus 116 l~~~~-~~l~~~l~~l 130 (139)
T 3eff_K 116 YTRTT-RALHERFDRL 130 (139)
T ss_dssp HHHHH-HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHH
Confidence 33333 5566666554
No 51
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.29 E-value=1.2e-11 Score=119.89 Aligned_cols=108 Identities=12% Similarity=0.183 Sum_probs=86.1
Q ss_pred CCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceee---eCCCCCeechhhhHhh
Q 007545 421 VPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFT---PRKDGEFCGEELVSWA 495 (599)
Q Consensus 421 vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~fGE~~l~~~ 495 (599)
-|.|.+.++.....++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|... .+++|++|||..+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G-~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~--- 79 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEG-TLKTEHVSENGKTLEIDEIKPVQIIASGFI--- 79 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEES-CEEEEEECTTSCEEEEEEECSSEESSGGGT---
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEee-EEEEEEECCCCCEEEEEEecCCCEeeeHHH---
Confidence 4788888999999999999999999999999999999999999999 99988 3455432 3899999999976
Q ss_pred hccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 496 VDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 496 l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
+.+. +++..+++|+++|+++.+++++|.++++++|+.
T Consensus 80 ~~~~-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 116 (213)
T 1o5l_A 80 FSSE-------PRFPVNVVAGENSKILSIPKEVFLDLLMKDREL 116 (213)
T ss_dssp TSSS-------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHH
T ss_pred hcCC-------CCceEEEEEccceEEEEEeHHHHHHHHHHCHHH
Confidence 2211 156889999999999999999999999999773
No 52
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.27 E-value=1e-11 Score=123.29 Aligned_cols=107 Identities=7% Similarity=0.029 Sum_probs=92.0
Q ss_pred hcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceee---eCCCCCeechhhh
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFT---PRKDGEFCGEELV 492 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~fGE~~l 492 (599)
+.++..+..++++.++.++..++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|... .+++|++||| .+
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G-~v~~~~~~~~G~~~~~~~~~~G~~~G~-~l 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEG-KIKLDIIFEDGSEKLLYYAGGNSLIGK-LY 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEES-CEEEEEECTTSCEEEEEEECTTCEECC-CS
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEee-EEEEEEECCCCCEEEEEEecCCCEEee-ec
Confidence 3444445889999999999999999999999999999999999999999 99998 3455433 3899999999 44
Q ss_pred HhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCch
Q 007545 493 SWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 493 ~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~ 539 (599)
.+ . +..+++|+++|+++.+++++|.+++.++|+.
T Consensus 89 ----~~--------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~ 122 (250)
T 3e6c_C 89 ----PT--------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDM 122 (250)
T ss_dssp ----CC--------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHH
T ss_pred ----CC--------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHH
Confidence 11 2 5789999999999999999999999999983
No 53
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.26 E-value=8.7e-12 Score=148.13 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=97.7
Q ss_pred hhhhcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecC------cc-eeeeCCCCCee
Q 007545 415 LPVLKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSS------TS-VFTPRKDGEFC 487 (599)
Q Consensus 415 ~~~l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~------~g-~~~~l~~G~~f 487 (599)
...|+++++|+++++..+.+||..|+.+.|.+||+|+++||+++.+|+|.+| .|+++.. ++ .+..+++|+.|
T Consensus 41 ~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsG-sV~V~i~~~~~~~~~~~v~~l~~G~sF 119 (999)
T 4f7z_A 41 FTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAG-SLDVKVSETSSHQDAVTICTLGIGTAF 119 (999)
T ss_dssp HHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEES-EEEEEECSSSCTTSCEEEEEEETTCEE
T ss_pred HHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEee-EEEEEEecCCCCCCceeEEEecCCcch
Confidence 5678999999999999999999999999999999999999999999999999 9999821 12 23459999999
Q ss_pred chhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCc
Q 007545 488 GEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 488 GE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~ 538 (599)
|| ++ +. .. +|++|++|.++|++++|++++|+.+..+||+
T Consensus 120 GE-al---l~--n~------pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e 158 (999)
T 4f7z_A 120 GE-SI---LD--NT------PRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (999)
T ss_dssp CG-GG---GG--TC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred hh-hh---cc--CC------CcceEEEeccceEEEEEEHHHHHHHHHhChH
Confidence 99 45 22 11 6799999999999999999999999999987
No 54
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.24 E-value=1.3e-11 Score=140.31 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=107.8
Q ss_pred HHHhhCChhHHHHHHhhcchhhhcCCCcccCCCHHHHHHHHhhCc-eecccCCcEEEcCCCCCCeEEEEEEcCeEEEecC
Q 007545 396 QFFNDLPPELSFAMKHELCLPVLKEVPMLQRMDEQRMNAILYHFN-LVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSS 474 (599)
Q Consensus 396 ~ll~~Lp~~Lr~~i~~~l~~~~l~~vplF~~~~~~~l~~L~~~l~-~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~ 474 (599)
.++...| ..|.+-......+.++++|+|++++++.+..++..++ .+.|.+|++|+++||.++.+|||.+| .|+++..
T Consensus 13 ~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG-~V~v~~~ 90 (694)
T 3cf6_E 13 MILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKG-SVNVVIY 90 (694)
T ss_dssp HHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEES-EEEEEET
T ss_pred HHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEE-EEEEEEe
Confidence 4554433 3444444444577899999999999999999999998 78999999999999999999999999 9999832
Q ss_pred -cceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEec-eeeeeEechHhHHHHHHhCCch
Q 007545 475 -TSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVT-QVDAFSIEAGDLKEFVNQCRQP 539 (599)
Q Consensus 475 -~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~-~~el~~L~~~dl~~l~~~fp~~ 539 (599)
++....+++|++|||.++ +.+. ++.++++|++ +|+++.+++++|.++++++|..
T Consensus 91 g~~il~~l~~Gd~fGe~al---~~~~--------~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 GKGVVCTLHEGDDFGKLAL---VNDA--------PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp TTEEEEEEETTCEECHHHH---HHTC--------BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred CCEEEEEeCCCCEeehHHH---hCCC--------CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 234455999999999876 3221 5689999999 5999999999999999999984
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.20 E-value=5.9e-11 Score=141.03 Aligned_cols=110 Identities=11% Similarity=0.148 Sum_probs=96.5
Q ss_pred chhhhcCCCcccCCCHHHHHHHHhhCceec-ccCCcEEEcCCCCCCeEEEEEEcCeEEEe-cCcceeeeCCCCCeechhh
Q 007545 414 CLPVLKEVPMLQRMDEQRMNAILYHFNLVP-YTQGMFLVQEGNPVNKLQLIVVGGDTLSW-SSTSVFTPRKDGEFCGEEL 491 (599)
Q Consensus 414 ~~~~l~~vplF~~~~~~~l~~L~~~l~~~~-~~~ge~I~~~Gd~~~~myfI~~G~~v~i~-~~~g~~~~l~~G~~fGE~~ 491 (599)
..+.++++|.|++++...++.++..+.... +..|++|++|||.++.+|||.+| +|+|+ ..++.+..+++||+|||.+
T Consensus 335 l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG-~V~V~~~~~~~v~~L~~Gd~FGElA 413 (999)
T 4f7z_A 335 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKG-SVNVVIYGKGVVCTLHEGDDFGKLA 413 (999)
T ss_dssp HHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEES-EEEEEETTTEEEEEEETTCEECGGG
T ss_pred HHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEee-EEEEEEcCCcceEEecCCCcccchh
Confidence 356789999999999999999999999765 46799999999999999999999 99998 4456666699999999998
Q ss_pred hHhhhccCCCCCCCcCCCceEEEEece-eeeeEechHhHHHHHHh
Q 007545 492 VSWAVDQQSDSSTVFPRSTRTVEAVTQ-VDAFSIEAGDLKEFVNQ 535 (599)
Q Consensus 492 l~~~l~~~~~~~~~~~~s~~tv~A~~~-~el~~L~~~dl~~l~~~ 535 (599)
+ +.. .++.+||+|.++ |++++++++||.+++.+
T Consensus 414 L---L~~--------~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 414 L---VND--------APRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp G---TCS--------CBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred h---ccC--------CCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 8 432 277999999985 99999999999999876
No 56
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.19 E-value=1.6e-10 Score=114.29 Aligned_cols=102 Identities=8% Similarity=0.089 Sum_probs=85.2
Q ss_pred HHHHHHHHhhCc---eecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceee---eCCCCCeechhhhHhhhccCC
Q 007545 429 EQRMNAILYHFN---LVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFT---PRKDGEFCGEELVSWAVDQQS 500 (599)
Q Consensus 429 ~~~l~~L~~~l~---~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~fGE~~l~~~l~~~~ 500 (599)
+++++.++.... .+.|.+||+|+++||+++.+|||.+| .|+++ ..+|... .+++|++|||..+ +.+.+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G-~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~---~~~~~ 105 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKG-AVKLSRVYEAGEEITVALLRENSVFGVLSL---LTGNK 105 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEES-CEEEEEECTTCCEEEEEEECTTCEESCHHH---HSSCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeC-EEEEEEECCCCCEEEEEEecCCCEEcchHH---hCCCC
Confidence 667888888888 99999999999999999999999999 99998 4455432 3899999999876 33222
Q ss_pred CCCCCcCCCceEEEEeceeeeeEechHhHHHHHHhCCchh
Q 007545 501 DSSTVFPRSTRTVEAVTQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 501 ~~~~~~~~s~~tv~A~~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
. ++..+++|+++|+++.+++++|.++++++|+..
T Consensus 106 ~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 139 (243)
T 3la7_A 106 S------DRFYHAVAFTPVELLSAPIEQVEQALKENPELS 139 (243)
T ss_dssp S------BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHH
T ss_pred C------cceEEEEEccceEEEEEcHHHHHHHHHHCHHHH
Confidence 1 245899999999999999999999999998733
No 57
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.13 E-value=3.2e-10 Score=111.64 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHh--hCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCcceeee---CCCCCeechhhhHhhhcc
Q 007545 426 RMDEQRMNAILY--HFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVFTP---RKDGEFCGEELVSWAVDQ 498 (599)
Q Consensus 426 ~~~~~~l~~L~~--~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~~~---l~~G~~fGE~~l~~~l~~ 498 (599)
+++++.+..++. .++.+.|.+|++|+++||+++.+|||.+| .|+++ ..+|.... + +|++|||..+ +.+
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G-~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~---~~~ 77 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDG-ITKLTSISENGTIMNLQYY-KGAFVIMSGF---IDT 77 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEES-EEEEEEECTTSCEEEEEEE-ESSEEEESBC---TTT
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEec-EEEEEEECCCCCEEEEEEc-CCCEecchhh---hcC
Confidence 678888898885 59999999999999999999999999999 99998 44554322 7 9999999866 221
Q ss_pred CCCCCCCcCC-CceEEEEe-ceeeeeEechHhHHHHHHhCCchh
Q 007545 499 QSDSSTVFPR-STRTVEAV-TQVDAFSIEAGDLKEFVNQCRQPD 540 (599)
Q Consensus 499 ~~~~~~~~~~-s~~tv~A~-~~~el~~L~~~dl~~l~~~fp~~~ 540 (599)
. ++ +..++.|+ ++|+++.+++++|.++++++|+..
T Consensus 78 ~-------~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~ 114 (238)
T 2bgc_A 78 E-------TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHF 114 (238)
T ss_dssp C-------CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHH
T ss_pred C-------CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHH
Confidence 1 11 25677888 599999999999999999998833
No 58
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.08 E-value=1.3e-09 Score=95.09 Aligned_cols=57 Identities=9% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHIN 345 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~ 345 (599)
.|..|+||+++|+| +||||++|.+..+++++++.+++|..++++.++++++.++..+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999 9999999999999999999999999999999999998875443
No 59
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.05 E-value=6.2e-11 Score=101.58 Aligned_cols=57 Identities=4% Similarity=0.024 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHIN 345 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~ 345 (599)
.|..|+||+++|+| +||||++|.+..+++++++.+++|+.++++.+|.+++.+.+..
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999 9999999999999999999999999999999999998776543
No 60
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.94 E-value=1.6e-09 Score=88.67 Aligned_cols=53 Identities=9% Similarity=0.247 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFL 341 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il 341 (599)
.|..|+||+++|+| +||||++|.+..+++++++.+++|..++++.+|++++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36779999999999 999999999999999999999999999999999998865
No 61
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.92 E-value=1.8e-09 Score=91.32 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 290 FLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQH 343 (599)
Q Consensus 290 Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~ 343 (599)
|..|+||+++|+| +||||++|.+..+++++++.+++|..++++++|+++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999 99999999999999999999999999999999999987654
No 62
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.91 E-value=9.5e-11 Score=109.37 Aligned_cols=61 Identities=5% Similarity=0.170 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcH
Q 007545 288 QKFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHINGNS 348 (599)
Q Consensus 288 ~~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~ 348 (599)
..|..|+||+++|+| +||||++|.+..+++++++.+++|++++|+++|.+++.+.+...+.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999 9999999999999999999999999999999999998887554443
No 63
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.89 E-value=2.7e-09 Score=101.50 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=64.5
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCccee---eeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEe
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SSTSVF---TPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAV 516 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~g~~---~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~ 516 (599)
+.|.+|++|+++||+++.+|||.+| .|+++ ..+|.. ..+++|++||| .+ +.+. ++..+++|+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G-~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~---~~~~--------~~~~~~~A~ 68 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEG-LVRVVELLPDGRLITLRHVLPGDYFGE-EA---LEGK--------AYRYTAEAM 68 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEES-CEEEEEECTTSCEEEEEEECTTCEECG-GG---GTCS--------BCSSEEEES
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeC-EEEEEEECCCCCEEEEEEecCCCEech-hh---hCCC--------CceeEEEEC
Confidence 5689999999999999999999999 99998 344533 33899999999 77 3321 568899999
Q ss_pred ceeeeeEechHhHH
Q 007545 517 TQVDAFSIEAGDLK 530 (599)
Q Consensus 517 ~~~el~~L~~~dl~ 530 (599)
++|+++.+++++|.
T Consensus 69 ~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 69 TEAVVQGLEPRAMD 82 (195)
T ss_dssp SSEEEEEECGGGCC
T ss_pred CcEEEEEEcHHHcC
Confidence 99999999999987
No 64
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.80 E-value=3.4e-08 Score=100.22 Aligned_cols=59 Identities=8% Similarity=-0.047 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHhc-cccc-ccc-ccCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007545 287 LQKFLYCFQWGIRSLS-FAQN-FQT-STDAWE----NIFSSAMTITGAVFIPFHLWNVMQFLQHIN 345 (599)
Q Consensus 287 ~~~Yl~slYwa~~Tmt-vGyG-di~-~~~~~E----~if~i~~mi~G~~~fa~lIg~i~~il~~~~ 345 (599)
++.+..|+||+++|+| +||| |+. |.+..- ..|++++++.|.++.+..+|-+.+-++...
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999 9999 985 665433 788899999999999999998877665443
No 65
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.73 E-value=1e-08 Score=98.06 Aligned_cols=82 Identities=17% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHhhCceecccCCcEEEcCCCCC--CeEEEEEEcCeEEEe--cCcceee---eCCCCCeechhhhHhhhccCCCCCCCcC
Q 007545 435 ILYHFNLVPYTQGMFLVQEGNPV--NKLQLIVVGGDTLSW--SSTSVFT---PRKDGEFCGEELVSWAVDQQSDSSTVFP 507 (599)
Q Consensus 435 L~~~l~~~~~~~ge~I~~~Gd~~--~~myfI~~G~~v~i~--~~~g~~~---~l~~G~~fGE~~l~~~l~~~~~~~~~~~ 507 (599)
+...++.+.|.+|++|+++||++ +.+|||.+| .|+++ ..+|... .+++|++||| .+ +.+.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G-~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~---l~~~-------- 67 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEG-LVRLEAVDEEGNALTLRLVRPGGFFGE-EA---LFGQ-------- 67 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEES-CEEEEEECTTSCEEEEEEECTTCEECT-HH---HHTC--------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeC-EEEEEEECCCCcEEEEEEecCCCEeee-hh---cCCC--------
Confidence 35677889999999999999999 999999999 99998 3455433 3899999999 55 2211
Q ss_pred CCceEEEEeceeeeeEechHhHH
Q 007545 508 RSTRTVEAVTQVDAFSIEAGDLK 530 (599)
Q Consensus 508 ~s~~tv~A~~~~el~~L~~~dl~ 530 (599)
++..+++|+++|+++.+ +++|.
T Consensus 68 ~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 68 ERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp CBCSEEEESSCEEEEEC-CSSCC
T ss_pred CcceEEEEcccEEEEEE-hHhcC
Confidence 56789999999999999 98876
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.67 E-value=3.6e-08 Score=100.45 Aligned_cols=55 Identities=7% Similarity=0.129 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQH 343 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~ 343 (599)
.|..|+||++.||| +||||++|.+...++++++.+++|++++|+++|.+.+.++.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999 99999999999999999999999999999999988776643
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.64 E-value=7.3e-08 Score=97.89 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHI 344 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~ 344 (599)
.|..|+||+++||| +||||++|.|...++|+++.+++|..+++++++++++.+.+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999 999999999999999999999999999999999999988653
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.59 E-value=2.7e-08 Score=102.48 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHIN 345 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~ 345 (599)
.|..|+||+++||| +||||++|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999999 9999999999999999999999999999999999988766443
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.42 E-value=2.2e-07 Score=95.31 Aligned_cols=56 Identities=9% Similarity=0.082 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHI 344 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~ 344 (599)
.|..|+||+++||| +||||+.|.+...++++++.|++|++++|+++|.+.+.++..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999 999999999999999999999999999999999998877654
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.34 E-value=2.6e-07 Score=93.86 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWEN------IFSSAMTITGAVFIPFHLWNVMQFLQHINGNS 348 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~------if~i~~mi~G~~~fa~lIg~i~~il~~~~~~~ 348 (599)
.|+.|+||++.|+| |||||++|.+...+ +++++.+++|+.+++++++.+++.+.....+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999 99999999998887 59999999999999999999999887665443
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.30 E-value=2.4e-06 Score=95.01 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 007545 290 FLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWN-VMQFL 341 (599)
Q Consensus 290 Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~-i~~il 341 (599)
|+.|+||+++||| +||||++|.+..+++++++.+++|++++++.++. +.+++
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999 9999999999999999999999999999999998 54443
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.25 E-value=1.6e-06 Score=86.83 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQH 343 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~ 343 (599)
.|..|+||+++|+| +||||++|.|...++|+++.+++|..+++++++++++.+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999 99999999999999999999999999999999999875543
No 73
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.13 E-value=8.3e-06 Score=83.78 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhc-ccccccccc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTST--DAWENIFSSAMTITGAVFIPFHLWNVMQFLQHIN 345 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~--~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~~ 345 (599)
.+..++|||+.|+| +||||+.|+ +..-++++++.+++|.++.|+.+|-+.+-++...
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 35679999999999 999999997 5678899999999999999999998766554433
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.12 E-value=2e-06 Score=86.11 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhc-cccccccccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 290 FLYCFQWGIRSLS-FAQNFQTSTDAWE-------NIFSSAMTITGAVFIPFHLWNVMQFLQH 343 (599)
Q Consensus 290 Yl~slYwa~~Tmt-vGyGdi~~~~~~E-------~if~i~~mi~G~~~fa~lIg~i~~il~~ 343 (599)
|+.|+||++.|+| |||||+.|.+... ++++++.+++|+.+++++++.++++++.
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999 9999999998854 9999999999999999999999887654
No 75
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.99 E-value=5e-07 Score=93.68 Aligned_cols=55 Identities=9% Similarity=0.223 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007545 290 FLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQHI 344 (599)
Q Consensus 290 Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~~ 344 (599)
|..|+||+++|+| +||||++|.+..+++++++.+++|.+++++++|.+.+.+.+.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999999 999999999999999999999999999999999998877653
No 76
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.96 E-value=2.7e-05 Score=80.13 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHhc-ccccccccc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 288 QKFLYCFQWGIRSLS-FAQNFQTST--DAWENIFSSAMTITGAVFIPFHLWNVMQFLQH 343 (599)
Q Consensus 288 ~~Yl~slYwa~~Tmt-vGyGdi~~~--~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~ 343 (599)
..+..++||++.|+| +||||+.|+ +..-++++.+.+++|.++.|+.+|-+..=++.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357789999999999 999999864 78889999999999999999999977655443
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.08 E-value=0.011 Score=57.24 Aligned_cols=74 Identities=20% Similarity=0.163 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhhcceeeEEEEEeccceeEeecCCchhhHHHHHHHHHHHHHHHHHHhhccceeccccccCCCccc
Q 007545 40 DNWNLIFVAACWLSISLDGSFFYILYIDDYRKCLVLAKDLTFTLVVLRTVLDSFQIVYVYIRAHTHVPVPDFINGRGFHT 119 (599)
Q Consensus 40 ~~Wd~~~~~~~~~~~~v~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~f~~DI~l~F~tay~~~~~v~~~G~l~ 119 (599)
+.+|.++.+++++++...-+. .. ..+.........++.++-++|.+|+++++-.. |
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~-------~~----~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~----------~--- 67 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGAT-------TY----ELDPLFLETIHLLDYGITIFFVIEILIRFIGE----------K--- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTC-------CS----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred chHHHHHHHHHHHHHHHHHHc-------cC----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------C---
Confidence 355666666666665543321 00 01122334566788899999999999987532 1
Q ss_pred CHHHHHHHhHH---HHHHHHHhcch
Q 007545 120 SKWTFAKKFFC---LLNGIVSVLPL 141 (599)
Q Consensus 120 d~~~Ia~~Ylk---F~~Dlls~lPl 141 (599)
-.++|++ =++|+++++|.
T Consensus 68 ----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 ----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp -----------CHHHHHHHHHHHHT
T ss_pred ----chhHHhcCCcHHHHHHHHHHH
Confidence 1245777 35898877764
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=94.99 E-value=0.032 Score=50.19 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccceeccccccCCCcccCHHHHHHHhHH-HHHHHHHhcchhh
Q 007545 81 FTLVVLRTVLDSFQIVYVYIRAHTHVPVPDFINGRGFHTSKWTFAKKFFC-LLNGIVSVLPLPQ 143 (599)
Q Consensus 81 ~~~~~~~~i~D~~f~~DI~l~F~tay~~~~~v~~~G~l~d~~~Ia~~Ylk-F~~Dlls~lPl~~ 143 (599)
..+..++.++-++|.+|.++++..+ .|+ ++|++ =++|++|++|+..
T Consensus 52 ~~~~~id~~~~~iF~~Ey~lRl~~a-------------~~k----~~f~~~~iiDllailP~~~ 98 (147)
T 2kyh_A 52 VRLYLVDLILVIILWADYAYRAYKS-------------GDP----AGYVKKTLYEIPALVPAGL 98 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------------TCH----HHHHHHSTTTHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-------------CcH----HHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999998764 122 46888 8999999999853
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=92.48 E-value=0.13 Score=45.19 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccceeccccccCCCcccCHHHHHHHhHH-HHHHHHHhcchh
Q 007545 80 TFTLVVLRTVLDSFQIVYVYIRAHTHVPVPDFINGRGFHTSKWTFAKKFFC-LLNGIVSVLPLP 142 (599)
Q Consensus 80 ~~~~~~~~~i~D~~f~~DI~l~F~tay~~~~~v~~~G~l~d~~~Ia~~Ylk-F~~Dlls~lPl~ 142 (599)
...+..+|.++-++|.+|.++++-.+ + ++ ++|++ =++|+++++|+.
T Consensus 36 ~~~l~~~d~~~~~iFt~E~~lRl~~~---~----------~~----~~y~~~niiDllailp~~ 82 (132)
T 1ors_C 36 LVRLYLVDLILVIILWADYAYRAYKS---G----------DP----AGYVKKTLYEIPALVPAG 82 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---T----------ST----TTTTTTCGGGTGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---C----------CH----HHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999998764 1 11 24666 689999999974
No 80
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=91.68 E-value=0.15 Score=32.73 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhh
Q 007545 553 KWRNWAAVIIQQAWCRQRKKKFQ 575 (599)
Q Consensus 553 ~~~~~~~~~~q~~~~~~~~r~~~ 575 (599)
+=+.++|..||.|||+|..|+..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 34789999999999999987653
No 81
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=91.16 E-value=0.16 Score=31.46 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 007545 554 WRNWAAVIIQQAWCRQRKKKF 574 (599)
Q Consensus 554 ~~~~~~~~~q~~~~~~~~r~~ 574 (599)
=+.++|..||.|||+|..|+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999987764
No 82
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=58.19 E-value=7.7 Score=35.21 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhh
Q 007545 552 EKWRNWAAVIIQQAWCRQRKKKFQTS 577 (599)
Q Consensus 552 ~~~~~~~~~~~q~~~~~~~~r~~~~~ 577 (599)
.+-+.+||..||+|||+++.|+..+.
T Consensus 126 ~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 126 RKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34578899999999999987776554
No 83
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=55.41 E-value=44 Score=27.37 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHh----hhcHHHHHHhhH-hHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcccCCCCHHHHHhhC
Q 007545 333 HLWNVMQFLQHI----NGNSERKIRKSS-QMQEVEMWRLFHVLSDNLKQKIRKYCQSVFQGTEGFNLHQFFNDL 401 (599)
Q Consensus 333 lIg~i~~il~~~----~~~~~~~~~k~~-~~~~i~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~L 401 (599)
+|++-+..+.++ +....+++.|++ ....++.|++.+.+|++.+.-+..-++ ...-+|...-++++
T Consensus 7 vIaqQQ~~In~lq~~~~klE~dlq~ki~slisSiEw~l~Smel~de~K~DieQqLn----sid~Inp~~aiddi 76 (110)
T 1lj2_A 7 VIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQIN----SIDAINPLHAFDDL 76 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT----TSCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHhc----cccccCcchhHhHH
Confidence 355555555444 344566777754 378899999999999999887665442 33444544333333
No 84
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=54.17 E-value=33 Score=32.35 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=50.2
Q ss_pred hCceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEec
Q 007545 438 HFNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVT 517 (599)
Q Consensus 438 ~l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~ 517 (599)
.+....+.||+.+=..--+.+++.+|++| ++++..+ |....+++||++= +. . ...-.++|.+
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G-~~~~~i~-~~~~~l~~Gd~~~-------~p-~--------~~~H~~~a~~ 99 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNG-NGEIFIE-NNKKTISNGDFLE-------IT-A--------NHNYSIEARD 99 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEES-EEEEEES-SCEEEEETTEEEE-------EC-S--------SCCEEEEESS
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeC-EEEEEEC-CEEEEECCCCEEE-------EC-C--------CCCEEEEECC
Confidence 34556789999997777788999999999 9998843 3345589998752 11 1 2245788888
Q ss_pred eeeeeEe
Q 007545 518 QVDAFSI 524 (599)
Q Consensus 518 ~~el~~L 524 (599)
++.++.+
T Consensus 100 ~~~~l~i 106 (227)
T 3rns_A 100 NLKLIEI 106 (227)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 8888866
No 85
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=53.92 E-value=11 Score=31.95 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=32.1
Q ss_pred ccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeec
Q 007545 444 YTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCG 488 (599)
Q Consensus 444 ~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fG 488 (599)
..||..-+.. +..+|.++|++| .+.+...+|....+++||.+-
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG-~~~lt~ddG~~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEG-EALYSQADADPVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEEC-CEEEEETTCCCEEECTTEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEe-EEEEEeCCCeEEEECCCCEEE
Confidence 4566555444 334599999999 999987677766799999874
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=53.79 E-value=17 Score=30.63 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=31.3
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+.||..+-.. ...+++++|++| ++++.. +|....+++||.+
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G-~~~~~~-~g~~~~l~~GD~v 87 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEG-RLSVST-DGETVTAGPGEIV 87 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEE-EEEEEE-TTEEEEECTTCEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeC-EEEEEE-CCEEEEECCCCEE
Confidence 345677655433 367899999999 999875 3555569999986
No 87
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=53.34 E-value=23 Score=28.88 Aligned_cols=45 Identities=11% Similarity=-0.004 Sum_probs=32.8
Q ss_pred ceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 440 NLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 440 ~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
-...+.||+.-.. -..+++++|++| ++++..++|....+++||.+
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G-~~~~~i~~g~~~~l~~GD~i 78 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEG-KVEVTTEDGKKYVIEKGDLV 78 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEE-EEEEEETTCCEEEEETTCEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeC-EEEEEECCCCEEEECCCCEE
Confidence 3455677776544 346899999999 99988543555569999976
No 88
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=50.43 E-value=9.5 Score=32.62 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=31.6
Q ss_pred cccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeec
Q 007545 443 PYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCG 488 (599)
Q Consensus 443 ~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fG 488 (599)
...||..-....+ .+++++|++| ++++..++|....+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G-~~~l~~~~g~~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEG-EARLVDPDGTVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEE-EEEEECTTCCEEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEE-EEEEEECCCeEEEECCCCEEE
Confidence 3456665544332 3799999999 999986566666699999873
No 89
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=49.93 E-value=17 Score=30.31 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=33.0
Q ss_pred CceecccCCcEEEcCCCC-CCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 439 FNLVPYTQGMFLVQEGNP-VNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 439 l~~~~~~~ge~I~~~Gd~-~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
+....+.||..+-.---. ..++++|++| ++++...+|....+++||.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G-~~~~~~~~~~~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISG-EAEYHQGNGIVTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEEC-EEEEECSTTCEEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEe-EEEEEECCCeEEEeCCCCEE
Confidence 344567788776443334 3689999999 99987534555568999975
No 90
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=48.79 E-value=14 Score=22.26 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 007545 557 WAAVIIQQAWCRQRKKKFQT 576 (599)
Q Consensus 557 ~~~~~~q~~~~~~~~r~~~~ 576 (599)
+|+.+|+..|+..+.||.+.
T Consensus 3 YAa~mI~e~yrq~K~~r~q~ 22 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQRX 22 (26)
T ss_pred hHHHHHHHHHHHHHhhhhhc
Confidence 68999999999999888754
No 91
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=46.62 E-value=29 Score=28.73 Aligned_cols=47 Identities=6% Similarity=-0.067 Sum_probs=33.8
Q ss_pred CceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 439 FNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 439 l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
+....+.||..+-.--.+.+++++|++| ++++..++ ....+++||.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G-~~~~~i~~-~~~~l~~Gd~i 84 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEG-EVEIGVDG-AQRRLHQGDLL 84 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEES-CEEEEETT-EEEEECTTEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEEC-EEEEEECC-EEEEECCCCEE
Confidence 3445678888776555556799999999 99987433 34458999876
No 92
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=46.08 E-value=18 Score=40.86 Aligned_cols=54 Identities=9% Similarity=0.034 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhc-cccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007545 289 KFLYCFQWGIRSLS-FAQNFQTSTDAWENIFSSAMTITGAVFIPFHLWNVMQFLQH 343 (599)
Q Consensus 289 ~Yl~slYwa~~Tmt-vGyGdi~~~~~~E~if~i~~mi~G~~~fa~lIg~i~~il~~ 343 (599)
....++++++.+++ .| ++..|.+...+++.+++++++.++.+.--++++++|+.
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35578999999888 77 57899999999999999999999999999999999875
No 93
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=45.16 E-value=16 Score=21.55 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHhh...
Q 007545 555 RNWAAVIIQQAWCRQRKKK... 573 (599)
Q Consensus 555 ~~~~~~~~q~~~~~~~~r~... 573 (599)
+-+|+.+||.-|++.++||
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 4568899999999888764
No 94
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=42.61 E-value=28 Score=28.39 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=29.8
Q ss_pred cccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 443 PYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 443 ~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
.+.||..+-.-..+.+++++|++| ++++..++ ....+++||.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G-~~~~~i~~-~~~~l~~Gd~i 86 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQG-EAVITFDD-QKIDLVPEDVL 86 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEE-EEEEEETT-EEEEECTTCEE
T ss_pred EECCCCccccEECCCCeEEEEEeC-EEEEEECC-EEEEecCCCEE
Confidence 356666554444456799999999 99887433 34459999875
No 95
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=42.01 E-value=54 Score=29.78 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=36.7
Q ss_pred HHHHHHHhhCce----ecccCCcEEE-cCCC----------CCCeEEEEEEcCeEEEecCc-c----e--eeeCCCCCee
Q 007545 430 QRMNAILYHFNL----VPYTQGMFLV-QEGN----------PVNKLQLIVVGGDTLSWSST-S----V--FTPRKDGEFC 487 (599)
Q Consensus 430 ~~l~~L~~~l~~----~~~~~ge~I~-~~Gd----------~~~~myfI~~G~~v~i~~~~-g----~--~~~l~~G~~f 487 (599)
+-+.+....++| +....+++++ ..|. +.++++++++| .+.+.-.+ | . ...+++||+|
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG-~m~l~v~d~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKG-SMLLKVVDETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEES-CEEEEEEECSSSSCEEEEEEECTTEEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeC-EEEEEEEcCCCcccceeeEEECCCCEE
Confidence 456666677777 5544466653 2333 34699999999 98887322 4 1 2339999987
No 96
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=41.17 E-value=24 Score=32.10 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=30.4
Q ss_pred eecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 441 LVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 441 ~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
...+.||...-.--....+..+|++| ++++.-.+|....+++||.+
T Consensus 83 ~v~l~PG~~~~~H~H~~eE~~~VLeG-el~l~ld~ge~~~L~~GDsi 128 (172)
T 3es1_A 83 VVDMLPGKESPMHRTNSIDYGIVLEG-EIELELDDGAKRTVRQGGII 128 (172)
T ss_dssp EEEECTTCBCCCBCCSEEEEEEEEES-CEEEECGGGCEEEECTTCEE
T ss_pred EEEECCCCCCCCeecCceEEEEEEeC-EEEEEECCCeEEEECCCCEE
Confidence 34456655432222334578899999 99998544555669999998
No 97
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=37.41 E-value=16 Score=29.27 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=30.2
Q ss_pred eecccCCcEEEcCCCCC-CeEEEEEEcCeEEEecCcc-eeeeCCCCCee
Q 007545 441 LVPYTQGMFLVQEGNPV-NKLQLIVVGGDTLSWSSTS-VFTPRKDGEFC 487 (599)
Q Consensus 441 ~~~~~~ge~I~~~Gd~~-~~myfI~~G~~v~i~~~~g-~~~~l~~G~~f 487 (599)
...+.||...-.---.. +++++|++| ++++..++| ....+.+||.+
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G-~~~~~~~~g~~~~~l~~Gd~~ 69 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTG-PLLLETPEGSVTSQLTRGVSY 69 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCE-EEEEEETTEEEEEEECTTCCE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeec-EEEEEeCCCCEEEEEcCCCEE
Confidence 34567776542211223 359999999 999885555 45559999976
No 98
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=37.31 E-value=42 Score=32.89 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=35.2
Q ss_pred CCCCeEEEEEEcCeEEEecCc-ceee--eCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEechHhH
Q 007545 455 NPVNKLQLIVVGGDTLSWSST-SVFT--PRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEAGDL 529 (599)
Q Consensus 455 d~~~~myfI~~G~~v~i~~~~-g~~~--~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~~dl 529 (599)
+..+++|++++| .+.+--.+ |... .+++|++|= -|+.. ..+=++-++|..+++.+..-
T Consensus 49 ~~~dE~FyqlkG-~m~l~~~d~g~~~~V~i~eGemfl--------lP~gv--------~HsP~r~~et~gLviE~~R~ 109 (286)
T 2qnk_A 49 EEGEEVFYQLEG-DMVLRVLEQGKHRDVVIRQGEIFL--------LPARV--------PHSPQRFANTVGLVVERRRL 109 (286)
T ss_dssp CSSCEEEEEEES-CEEEEEEETTEEEEEEECTTEEEE--------ECTTC--------CEEEEECTTCEEEEEEECCC
T ss_pred CCCCeEEEEEeC-eEEEEEEeCCceeeEEECCCeEEE--------eCCCC--------CcCCcccCCeEEEEEeecCC
Confidence 346899999999 88887323 5222 299998872 12221 22334456677777765443
No 99
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=37.31 E-value=33 Score=31.15 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHHhhCce----ecccC-CcEEE-cCCC----------CCCeEEEEEEcCeEEEecCc-ce--eeeCCCCCee
Q 007545 429 EQRMNAILYHFNL----VPYTQ-GMFLV-QEGN----------PVNKLQLIVVGGDTLSWSST-SV--FTPRKDGEFC 487 (599)
Q Consensus 429 ~~~l~~L~~~l~~----~~~~~-ge~I~-~~Gd----------~~~~myfI~~G~~v~i~~~~-g~--~~~l~~G~~f 487 (599)
.+-+.+....++| ..... +++++ ..|. +.++++++++| .+.+.-++ |. ...+++||+|
T Consensus 11 ~~~l~~~~~~~~PpV~n~~v~nd~~~~V~~v~Gpn~r~d~H~h~~dE~FyvlkG-~m~i~v~d~g~~~~v~l~eGE~f 87 (174)
T 1yfu_A 11 PRWIDEHAHLLKPPVGNRQVWQDSDFIVTVVGGPNHRTDYHDDPLEEFFYQLRG-NAYLNLWVDGRRERADLKEGDIF 87 (174)
T ss_dssp HHHHHHTGGGSSTTTCEEESSSSCSEEEEEECSCBCCCCEEECSSCEEEEEEES-CEEEEEEETTEEEEEEECTTCEE
T ss_pred HHHHHHhhhhcCCCcCCEEEEcCCcEEEEEEcCCCcCccCcCCCCceEEEEEee-EEEEEEEcCCceeeEEECCCCEE
Confidence 3455666666776 32222 34432 2222 35799999999 98887333 42 2339999987
No 100
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=37.27 E-value=48 Score=26.52 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=31.4
Q ss_pred ceecccCCcEEEcC--CCC-CCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 440 NLVPYTQGMFLVQE--GNP-VNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 440 ~~~~~~~ge~I~~~--Gd~-~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
....+.||..+-.. -.. ..++++|++| ++++..++ ....+++||.+
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G-~~~~~~~~-~~~~l~~Gd~~ 72 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDG-AGEAIVDG-HTQALQAGSLI 72 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEEC-CEEEEETT-EEEEECTTEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeC-EEEEEECC-EEEEeCCCCEE
Confidence 34456788776443 233 6799999999 98887433 33458999876
No 101
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=36.72 E-value=53 Score=25.64 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=30.5
Q ss_pred ceecccCCcEEEcCCCC-CCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 440 NLVPYTQGMFLVQEGNP-VNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 440 ~~~~~~~ge~I~~~Gd~-~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
....+.||..+-.--.. .+++++|++| .+++..+ +....+++||.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G-~~~~~~~-~~~~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEG-EVVVRVG-EEEALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEES-CEEEEET-TEEEEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeC-EEEEEEC-CEEEEeCCCCEE
Confidence 34456777776432223 3579999999 9888743 334458999876
No 102
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=36.41 E-value=76 Score=27.68 Aligned_cols=59 Identities=5% Similarity=0.072 Sum_probs=35.7
Q ss_pred cCCCCCCeEEEEEEcCeEEEecCcc------e-eeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEe
Q 007545 452 QEGNPVNKLQLIVVGGDTLSWSSTS------V-FTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSI 524 (599)
Q Consensus 452 ~~Gd~~~~myfI~~G~~v~i~~~~g------~-~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L 524 (599)
..-+..|++|+|++| .+.+.-+++ . ...+++|+++-- |+.. ..+-.|.++|.++.+
T Consensus 45 h~H~~tDE~Fivl~G-~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV--------PkGv--------eH~p~a~~e~~vLLi 107 (140)
T 3d0j_A 45 EIHHSTDEQFILSAG-KAILITAEKENDKFNIELTLMEKGKVYNV--------PAEC--------WFYSITQKDTKMMYV 107 (140)
T ss_dssp EEESSCCEEEEEEES-CEEEEEEEEETTEEEEEEEECCTTCCEEE--------CTTC--------EEEEEECTTCEEEEE
T ss_pred ccCCCCCeEEEEEec-EEEEEEecCcCCCCccceEEecCCCEEEe--------CCCc--------cCcccCCCceEEEEE
Confidence 344567899999999 998883321 1 123899988731 1211 223455566666666
Q ss_pred chH
Q 007545 525 EAG 527 (599)
Q Consensus 525 ~~~ 527 (599)
...
T Consensus 108 Ep~ 110 (140)
T 3d0j_A 108 QDS 110 (140)
T ss_dssp EES
T ss_pred EeC
Confidence 554
No 103
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=35.98 E-value=36 Score=27.38 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=38.5
Q ss_pred cCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEe
Q 007545 445 TQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSI 524 (599)
Q Consensus 445 ~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L 524 (599)
.||+.....-+..+++++|++| .+++..+++....+++||.+= + . .. ..-+.++.+++.++.+
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G-~~~~~~~~~~~~~l~~Gd~~~---i----p-~~--------~~H~~~~~~~~~~l~i 98 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEG-DMAVDFADGGSMTIREGEMAV---V----P-KS--------VSHRPRSENGCSLVLI 98 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSS-CEEEEETTSCEEEECTTEEEE---E----C-TT--------CCEEEEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeC-EEEEEECCCcEEEECCCCEEE---E----C-CC--------CcEeeEeCCCeEEEEE
Confidence 4555433333323799999999 998875442344599998762 1 1 11 1223444567777777
Q ss_pred chHhH
Q 007545 525 EAGDL 529 (599)
Q Consensus 525 ~~~dl 529 (599)
+..+.
T Consensus 99 ~~~~~ 103 (107)
T 2i45_A 99 ELSDP 103 (107)
T ss_dssp ECC--
T ss_pred ECCCc
Confidence 65543
No 104
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=35.17 E-value=51 Score=26.69 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=31.3
Q ss_pred ceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 440 NLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 440 ~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
....+.||..+-.--....++++|++| .+++..++ ....+.+|+.+
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G-~~~~~~~~-~~~~l~~Gd~~ 88 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSG-LAEITIDQ-ETYRVAEGQTI 88 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEES-EEEEEETT-EEEEEETTCEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeC-EEEEEECC-EEEEECCCCEE
Confidence 444567777664333346799999999 99887433 33458999876
No 105
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=34.40 E-value=50 Score=26.77 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=31.1
Q ss_pred ceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 440 NLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 440 ~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
....+.||..+-.---...++++|++| .+++..+ +....+.+||.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G-~~~~~~~-~~~~~l~~Gd~~ 82 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEG-EFHVNVD-GVIKVLTAGDSF 82 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEE-CEEEEET-TEEEEECTTCEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEee-EEEEEEC-CEEEEeCCCCEE
Confidence 445567887653322336789999999 9888742 334458999875
No 106
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=33.61 E-value=29 Score=31.49 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=32.8
Q ss_pred CceecccCCcEEEcCCCCCCeEEEEEEcCeEEEe--cCc-ceeeeCCCCCee
Q 007545 439 FNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSW--SST-SVFTPRKDGEFC 487 (599)
Q Consensus 439 l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~--~~~-g~~~~l~~G~~f 487 (599)
+....+.||.....--..++++++|++| ++++. ..+ +....+++||.+
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G-~~~v~v~~~~~~~~~~l~~GDv~ 93 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEG-QAILVLVNPDGRDTYKLDQGDAI 93 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEES-EEEEEEEETTEEEEEEEETTEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeE-EEEEEEEeCCCcEEEEECCCCEE
Confidence 4455678887765443346899999999 87776 223 333449999976
No 107
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=33.35 E-value=50 Score=27.29 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=32.6
Q ss_pred CceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 439 FNLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 439 l~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
+....+.||..+-.--....++++|++| .+++..++ ....+++|+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G-~~~~~~~~-~~~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEG-TLELTIGE-ETRVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEE-CEEEEETT-EEEEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEe-EEEEEECC-EEEEeCCCCEE
Confidence 3445677887764433445799999999 99887433 33458999875
No 108
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=32.11 E-value=67 Score=25.52 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=29.4
Q ss_pred ecccCCcEEEcCCCC-CCeE-EEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQEGNP-VNKL-QLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~-~~~m-yfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+.||..+-.---. ..++ ++|++| .+++..++|....+++||.+
T Consensus 38 ~~~~~g~~~~~H~H~~~~e~~~~vl~G-~~~~~~~~~~~~~l~~Gd~~ 84 (110)
T 2q30_A 38 FTFKAGQELPVHSHNIEGELNIVVLEG-EGEFVGDGDAVIPAPRGAVL 84 (110)
T ss_dssp EEECTTCEEEEECCSSSCEEEEEEEES-CEEEECGGGCEEEECTTEEE
T ss_pred EEECCCCcCCcccCCCCccEEEEEEeC-EEEEEeCCCEEEEECCCCEE
Confidence 346777766432222 2466 799999 99887543444559999875
No 109
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=31.68 E-value=35 Score=29.36 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=30.0
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeec
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCG 488 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fG 488 (599)
..+.||..-.. ...+++++|++| ++++..+ |....+++||.+-
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG-~~~l~~~-g~~~~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEG-ELHVRHE-GETMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEE-EEEEEET-TEEEEEETTCEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEEC-EEEEEEC-CEEEEECCCcEEE
Confidence 34667743222 236799999999 9998854 4555699999863
No 110
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=30.43 E-value=47 Score=30.10 Aligned_cols=44 Identities=9% Similarity=-0.057 Sum_probs=29.6
Q ss_pred cccCCcEEE---cCCCCCCeEEEEEEcCeEEEecCcc---eeeeCCCCCee
Q 007545 443 PYTQGMFLV---QEGNPVNKLQLIVVGGDTLSWSSTS---VFTPRKDGEFC 487 (599)
Q Consensus 443 ~~~~ge~I~---~~Gd~~~~myfI~~G~~v~i~~~~g---~~~~l~~G~~f 487 (599)
.+.||...- .-...++++++|++| ++++.-+++ ....+++||.+
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G-~~~~~~~~~~~~~~~~l~~GD~~ 172 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEG-EIHMKWGDKENPKEALLPTGASM 172 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEES-CEEEEESCTTSCEEEEECTTCEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEee-eEEEEECCcCCcccEEECCCCEE
Confidence 456766543 122345799999999 999884332 44459999976
No 111
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=30.36 E-value=46 Score=31.39 Aligned_cols=45 Identities=13% Similarity=-0.008 Sum_probs=29.3
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+.||...=.--.+.+++|+|++| .++....++....+++|+.+
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG-~~e~~v~~g~~~~l~pGd~v 181 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSG-RALFHLRNAPDLMLEPGQTR 181 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEE-CEEEEETTSCCEEECTTCEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeC-CEEEEECCCCEEecCCCCEE
Confidence 3445554432222456899999999 88876444555558898875
No 112
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=29.19 E-value=17 Score=21.41 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 007545 555 RNWAAVIIQQAWCRQRKKK 573 (599)
Q Consensus 555 ~~~~~~~~q~~~~~~~~r~ 573 (599)
+-+|+.+||..|++.++||
T Consensus 4 KiYAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 4 KVYAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4578999999999877665
No 113
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=28.58 E-value=42 Score=29.75 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=24.1
Q ss_pred CCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 456 PVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 456 ~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+++++|++| ++++.. +|....+++||.+
T Consensus 83 ~~eE~~yVLeG-~~~l~i-~g~~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDG-TLDIII-DGRKVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEE-EEEEEE-TTEEEEEETTCEE
T ss_pred CCcEEEEEEEe-EEEEEE-CCEEEEEcCCCEE
Confidence 36799999999 999985 4555669999976
No 114
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=27.73 E-value=1.3e+02 Score=23.38 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=32.8
Q ss_pred CCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeeeeEech
Q 007545 457 VNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDAFSIEA 526 (599)
Q Consensus 457 ~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el~~L~~ 526 (599)
..++++|.+| .+.+..++ ....+++||.+= +.+ ...-.+.+.+++.++.++.
T Consensus 50 ~~e~~~v~~G-~~~~~~~~-~~~~l~~Gd~~~-------ip~---------~~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 50 TDEVFIVMEG-TLQIAFRD-QNITLQAGEMYV-------IPK---------GVEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp CCEEEEEEES-EEEEECSS-CEEEEETTEEEE-------ECT---------TCCBEEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeC-EEEEEECC-EEEEEcCCCEEE-------ECC---------CCeEeeEcCCCCEEEEEEc
Confidence 3799999999 99887433 334488988752 111 1133455557787777653
No 115
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=27.53 E-value=53 Score=31.47 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=26.5
Q ss_pred CCeEEEEEEcCeEEEecCcceeeeCCCCCeec
Q 007545 457 VNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCG 488 (599)
Q Consensus 457 ~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fG 488 (599)
.+|+..|++| .+.+...+|....+++||.+-
T Consensus 186 ~~E~~~ILeG-~v~lt~~~G~~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEG-RVVLSLENGSSLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEEC-CEEEEETTSCEEEECTTCEEE
T ss_pred CCEEEEEEEe-EEEEEeCCCCEEEECCCCEEE
Confidence 4699999999 999997778777799999874
No 116
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=27.45 E-value=48 Score=27.10 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=27.7
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+.||...-.--....++++|++| .+++..++.....+++||.+
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G-~~~~~i~~~~~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKG-EMTLTLEDQEPHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEES-EEEEEETTSCCEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeC-EEEEEECCEEEEEeCCCCEE
Confidence 3455665542212235689999999 99887433333258898875
No 117
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=27.32 E-value=46 Score=22.83 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 007545 556 NWAAVIIQQAWCRQRKKK 573 (599)
Q Consensus 556 ~~~~~~~q~~~~~~~~r~ 573 (599)
+-++..||..|+.+..||
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 447777888888777666
No 118
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=26.82 E-value=1.2e+02 Score=28.08 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=29.4
Q ss_pred hcCCCcccCCCHHHHHHHHhhCceecccCCcEEEcCCCCC-CeEE
Q 007545 418 LKEVPMLQRMDEQRMNAILYHFNLVPYTQGMFLVQEGNPV-NKLQ 461 (599)
Q Consensus 418 l~~vplF~~~~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~-~~my 461 (599)
+-+.|.|++++-....+.+... ..||.|+|+...+ +++-
T Consensus 5 vI~HP~F~n~~~~qAe~~L~~~-----~~Ge~iIRPSSkg~dhLt 44 (197)
T 3or8_A 5 VINHPYYFPFNGKQAEDYLRSK-----ERGDFVIRQSSRGDDHLA 44 (197)
T ss_dssp CCCCTTEECCCHHHHHHHHTTS-----CTTCEEEEECSSCTTEEE
T ss_pred ccCCCCcCCCCHHHHHHHHhcC-----CCCCEEEeeCCCCCCcEE
Confidence 3468999999987777766542 6899999998875 4543
No 119
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=25.95 E-value=78 Score=28.13 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=30.5
Q ss_pred ceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 440 NLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 440 ~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
....+.||..+-..--...++++|++| .+++..++ ....+++||++
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G-~~~~~i~~-~~~~l~~Gd~i 104 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRG-HAEVVLDD-RVEPLTPLDCV 104 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEES-EEEEEETT-EEEEECTTCEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeC-EEEEEECC-EEEEECCCCEE
Confidence 344556776553333346899999999 98887433 34448999876
No 120
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=25.89 E-value=48 Score=19.93 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 007545 558 AAVIIQQAWCRQRKKKFQT 576 (599)
Q Consensus 558 ~~~~~q~~~~~~~~r~~~~ 576 (599)
+-.+||...|+.++||.+.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5578999999999998775
No 121
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=25.78 E-value=43 Score=32.70 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=31.0
Q ss_pred eecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 441 LVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 441 ~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
...+.||.---.....+++..||++| ++++...+|....+++|+++
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG-~l~l~l~~g~~~~L~~Gds~ 119 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEG-AVTLTNTSSSSKKLTVDSYA 119 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEE-CEEEEC--CCCEEECTTEEE
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEE-EEEEEECCCcEEEEcCCCEE
Confidence 34567776542223346789999999 99998543455569999876
No 122
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=25.59 E-value=58 Score=26.71 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=23.3
Q ss_pred CCCCeEEEEEEcCeEEEecCccee-eeCCCCCee
Q 007545 455 NPVNKLQLIVVGGDTLSWSSTSVF-TPRKDGEFC 487 (599)
Q Consensus 455 d~~~~myfI~~G~~v~i~~~~g~~-~~l~~G~~f 487 (599)
...++.++|++| ++++.-+++.. ..+++||.+
T Consensus 51 ~~~~E~~~Vl~G-~~~l~~~~~~~~~~l~~Gd~i 83 (112)
T 2opk_A 51 SPQDEWVMVVSG-SAGIECEGDTAPRVMRPGDWL 83 (112)
T ss_dssp CSSEEEEEEEES-CEEEEETTCSSCEEECTTEEE
T ss_pred CCccEEEEEEeC-eEEEEECCEEEEEEECCCCEE
Confidence 356799999999 99887433321 458999876
No 123
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=25.36 E-value=65 Score=21.10 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 007545 557 WAAVIIQQAWCRQRKKKFQT 576 (599)
Q Consensus 557 ~~~~~~q~~~~~~~~r~~~~ 576 (599)
+|-.+||.-.|+.++||.++
T Consensus 12 YatfLIQdyFRkfkkrke~~ 31 (37)
T 2be6_D 12 YATFLIQEYFRKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999875
No 124
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=24.91 E-value=1.1e+02 Score=31.23 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=52.2
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCeechhhhHhhhccCCCCCCCcCCCceEEEEeceeee
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFCGEELVSWAVDQQSDSSTVFPRSTRTVEAVTQVDA 521 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~fGE~~l~~~l~~~~~~~~~~~~s~~tv~A~~~~el 521 (599)
..+.||+..-.--..+..+|.|.+| .-.+.- +|.....++||.|- + | + -...+..+.+++.+
T Consensus 284 ~~L~pG~~t~~hRht~s~Vy~V~eG-~G~~~I-~~~~~~w~~gD~fv---v-----P-~-------w~~h~~~n~~~a~L 345 (368)
T 3nw4_A 284 HRLRAGTETATRNEVGSTVFQVFEG-AGAVVM-NGETTKLEKGDMFV---V-----P-S-------WVPWSLQAETQFDL 345 (368)
T ss_dssp EEECTTCBCCCEEESSCEEEEEEES-CEEEEE-TTEEEEECTTCEEE---E-----C-T-------TCCEEEEESSSEEE
T ss_pred EEECCCCccCCeeccccEEEEEEeC-cEEEEE-CCEEEEecCCCEEE---E-----C-C-------CCcEEEEeCCCEEE
Confidence 4456666553333456789999999 544442 22333489999873 2 1 1 22456677889999
Q ss_pred eEechHhHHHHHHhCCc
Q 007545 522 FSIEAGDLKEFVNQCRQ 538 (599)
Q Consensus 522 ~~L~~~dl~~l~~~fp~ 538 (599)
+.++-.-+.+-+.-|++
T Consensus 346 f~~~D~Pl~~~LGl~r~ 362 (368)
T 3nw4_A 346 FRFSDAPIMEALSFMRT 362 (368)
T ss_dssp EEEESHHHHHHTTCCCE
T ss_pred EEEeCHHHHHHhCCcee
Confidence 99999988887777755
No 125
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=24.73 E-value=40 Score=34.91 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=32.2
Q ss_pred ceecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 440 NLVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 440 ~~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
....+.||+.+-.---...++|||++| +-....-+|....+++||++
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG-~G~~t~v~G~~~~~~~GD~i 172 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEG-SGAYTIVDGHKVELGANDFV 172 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEEC-SCEEEEETTEEEEECTTCEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEe-eEEEEEECCEEEEEcCCCEE
Confidence 556778888875444455689999999 65432224555559999987
No 126
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=22.88 E-value=28 Score=28.13 Aligned_cols=48 Identities=8% Similarity=-0.028 Sum_probs=30.7
Q ss_pred CceecccCCcEEEcCCCCC-CeEEEEEEcCeEEEecCccee--eeCCCCCee
Q 007545 439 FNLVPYTQGMFLVQEGNPV-NKLQLIVVGGDTLSWSSTSVF--TPRKDGEFC 487 (599)
Q Consensus 439 l~~~~~~~ge~I~~~Gd~~-~~myfI~~G~~v~i~~~~g~~--~~l~~G~~f 487 (599)
.+...+.||+-+-..--.. .+.++|.+| ++.+...+|.. ..+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G-~~~v~~~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADG-EMTIVAPDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCB-C-CEECTTSCEECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEecc-EEEEEeCCCceEEEEecCCcEE
Confidence 4556788988885443333 467778888 99888545433 237888764
No 127
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=22.66 E-value=60 Score=29.21 Aligned_cols=30 Identities=7% Similarity=-0.201 Sum_probs=23.0
Q ss_pred CCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 456 PVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 456 ~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
.+++++||++| .+++.-.+ ....+.+|+.+
T Consensus 109 ~gEE~~yVLeG-~v~vtl~g-~~~~L~~Gds~ 138 (166)
T 2vpv_A 109 RTYITFHVIQG-IVEVTVCK-NKFLSVKGSTF 138 (166)
T ss_dssp SEEEEEEEEES-EEEEEETT-EEEEEETTCEE
T ss_pred CceEEEEEEEe-EEEEEECC-EEEEEcCCCEE
Confidence 45789999999 99998433 34458999986
No 128
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.03 E-value=1.2e+02 Score=27.20 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=29.8
Q ss_pred ecccCCcEEEc--CCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQ--EGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~--~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+.||...-. -.....++++|++| ++++..+ +....+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G-~~~~~~~-~~~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEG-IMKVFFD-EQWHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEES-CEEEEET-TEEEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEe-EEEEEEC-CEEEEeCCCCEE
Confidence 45677776542 12334699999999 9988743 344459999976
No 129
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=21.92 E-value=72 Score=28.20 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=28.9
Q ss_pred eecccCCcEEE--cCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 441 LVPYTQGMFLV--QEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 441 ~~~~~~ge~I~--~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
...+.||.... ..-+..+++++|++| ++++...+ ....+++||.+
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G-~~~~~~~~-~~~~l~~GD~i 93 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEG-ALVLVDDQ-GEHPMVPGDCA 93 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEES-CEEEEETT-EEEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEEC-EEEEEECC-EEEEeCCCCEE
Confidence 34556766442 222223699999999 99987433 34458999875
No 130
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.83 E-value=84 Score=29.89 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=35.3
Q ss_pred hhCceecccCCcEEEc-CCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 437 YHFNLVPYTQGMFLVQ-EGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 437 ~~l~~~~~~~ge~I~~-~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+....+.||..+-. +-...++.++|++| +.++.. +|....+++||++
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG-~~~~~~-~~~~~~l~~GD~~ 214 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEG-EGLYKL-EENYYPVTAGDII 214 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEEC-EEEEEE-TTEEEEEETTCEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEEC-EEEEEE-CCEEEEcCCCCEE
Confidence 3445567889887753 34456789999999 998874 3445569999976
No 131
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=21.39 E-value=66 Score=28.74 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=29.5
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+.||..+-.---...++++|++| ++++..+ |....+++||.+
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G-~~~~~v~-g~~~~l~~GD~i 101 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKG-RGHAMVG-RAVSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEE-CEEEEET-TEEEEECTTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeC-EEEEEEC-CEEEEeCCCCEE
Confidence 3456776653333345689999999 9888743 334458999976
No 132
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=21.12 E-value=86 Score=26.17 Aligned_cols=30 Identities=10% Similarity=-0.201 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 457 VNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 457 ~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
.+++++|++| .+++..+++....+++||.+
T Consensus 64 ~~E~~~vl~G-~~~~~~~~~~~~~l~~Gd~~ 93 (134)
T 2o8q_A 64 GFQLFYVLRG-WVEFEYEDIGAVMLEAGGSA 93 (134)
T ss_dssp SCEEEEEEES-EEEEEETTTEEEEEETTCEE
T ss_pred CcEEEEEEeC-EEEEEECCcEEEEecCCCEE
Confidence 3799999999 99987544344458999875
No 133
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=20.54 E-value=1e+02 Score=25.37 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=28.3
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+.||...-.---...++++|.+| ++++..++ ....+++|+.+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G-~~~~~i~~-~~~~l~~Gd~~ 82 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQG-NAIIRIND-EDFPVTKGDLI 82 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEES-EEEEEETT-EEEEEETTCEE
T ss_pred EEECCCCccCCEecCCeEEEEEEeC-EEEEEECC-EEEEECCCcEE
Confidence 3455666433222345689999999 88887433 34448998876
No 134
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=20.51 E-value=88 Score=26.00 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=28.7
Q ss_pred ecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 442 VPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 442 ~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
..+.||...-.---...++++|++| ++++..++ ....+.+||.+
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G-~~~~~i~~-~~~~l~~Gd~i 96 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKG-KLTVLKEQ-GEETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEES-EEEEECSS-CEEEEETTEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEe-EEEEEECC-EEEEECCCCEE
Confidence 3456665543322336799999999 99887433 23448888876
No 135
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.50 E-value=87 Score=27.02 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=29.5
Q ss_pred eecccCCcEEEcCCCCCCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 441 LVPYTQGMFLVQEGNPVNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 441 ~~~~~~ge~I~~~Gd~~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
...+.||..+-.---...++++|++| .+++..++.....+.+|+.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G-~~~~~~~~~~~~~l~~Gd~i 97 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRG-KGFYQERGKPARILKKGDVV 97 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEE-EEEEEETTSCCEEEETTCEE
T ss_pred EEEECCCCccCceECCCceEEEEEeC-EEEEEECCEEEEEECCCCEE
Confidence 44566776653222234789999999 99887433321348888876
No 136
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=20.46 E-value=50 Score=25.91 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 007545 555 RNWAAVIIQQAWCRQRKKK 573 (599)
Q Consensus 555 ~~~~~~~~q~~~~~~~~r~ 573 (599)
+-+|+.+||..||++++||
T Consensus 62 KiYA~llI~d~~r~~k~r~ 80 (81)
T 3g43_E 62 KFYATFLIQEYFRKFKKRE 80 (81)
T ss_dssp CHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4456677777777766665
No 137
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.25 E-value=88 Score=26.34 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=29.8
Q ss_pred eecccCCcEEEcCCCC-CCeEEEEEEcCeEEEecCcceeeeCCCCCee
Q 007545 441 LVPYTQGMFLVQEGNP-VNKLQLIVVGGDTLSWSSTSVFTPRKDGEFC 487 (599)
Q Consensus 441 ~~~~~~ge~I~~~Gd~-~~~myfI~~G~~v~i~~~~g~~~~l~~G~~f 487 (599)
...+.||..+-.---. ..++++|++| ++++..+ +....+.+||.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G-~~~~~i~-~~~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLG-EGVFHDN-GKDVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEES-EEEEEET-TEEEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeC-EEEEEEC-CEEEEeCCCcEE
Confidence 3456787765322222 3689999999 9988743 334458999875
Done!