Query 007546
Match_columns 599
No_of_seqs 235 out of 781
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 12:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00774 WRKY DNA binding do 100.0 9.6E-30 2.1E-34 205.9 4.1 59 327-385 1-59 (59)
2 PF03106 WRKY: WRKY DNA -bindi 100.0 4E-30 8.8E-35 208.4 1.6 59 327-386 1-59 (60)
3 PF03101 FAR1: FAR1 DNA-bindin 92.7 0.057 1.2E-06 45.7 1.4 32 357-389 60-91 (91)
4 PF04500 FLYWCH: FLYWCH zinc f 88.8 0.12 2.6E-06 40.2 -0.1 50 326-385 11-62 (62)
5 TIGR02894 DNA_bind_RsfA transc 88.8 0.98 2.1E-05 44.3 6.0 42 147-188 105-146 (161)
6 TIGR00219 mreC rod shape-deter 87.0 0.7 1.5E-05 48.3 4.1 30 155-184 61-90 (283)
7 PF00170 bZIP_1: bZIP transcri 86.9 3 6.5E-05 34.0 7.0 41 150-190 23-63 (64)
8 KOG0646 WD40 repeat protein [G 85.7 4.7 0.0001 45.3 9.7 44 153-196 428-471 (476)
9 PRK11677 hypothetical protein; 85.3 3 6.5E-05 39.7 7.1 43 150-192 33-79 (134)
10 COG4026 Uncharacterized protei 84.2 2.5 5.3E-05 43.8 6.3 39 155-193 165-203 (290)
11 PF06295 DUF1043: Protein of u 82.0 4.9 0.00011 37.5 6.9 42 151-192 30-75 (128)
12 PF14645 Chibby: Chibby family 81.8 6.4 0.00014 36.6 7.5 43 148-190 73-115 (116)
13 PRK13922 rod shape-determining 80.9 1.9 4.1E-05 44.1 4.2 23 155-177 71-93 (276)
14 KOG4196 bZIP transcription fac 78.8 5.7 0.00012 38.0 6.2 37 155-191 83-119 (135)
15 PF06005 DUF904: Protein of un 78.4 12 0.00025 32.3 7.5 44 153-196 18-68 (72)
16 COG1792 MreC Cell shape-determ 77.2 2.6 5.7E-05 44.2 3.9 24 154-177 84-107 (284)
17 KOG4571 Activating transcripti 75.4 9.1 0.0002 40.9 7.2 42 152-193 247-288 (294)
18 smart00338 BRLZ basic region l 75.2 12 0.00027 30.5 6.6 41 150-190 23-63 (65)
19 PRK00888 ftsB cell division pr 73.6 8.4 0.00018 35.0 5.7 34 150-183 31-64 (105)
20 PF04977 DivIC: Septum formati 72.7 9.2 0.0002 31.5 5.3 37 150-186 21-57 (80)
21 TIGR03752 conj_TIGR03752 integ 71.3 12 0.00027 42.2 7.5 28 151-178 71-98 (472)
22 PF07412 Geminin: Geminin; In 71.2 4.2 9.2E-05 41.2 3.5 26 154-179 133-158 (200)
23 PF08650 DASH_Dad4: DASH compl 70.4 7.4 0.00016 33.8 4.3 36 154-190 26-62 (72)
24 PF06156 DUF972: Protein of un 69.4 11 0.00024 34.6 5.5 22 153-174 22-43 (107)
25 PF07795 DUF1635: Protein of u 68.9 16 0.00034 37.6 7.0 42 153-194 15-60 (214)
26 PF05377 FlaC_arch: Flagella a 67.3 26 0.00057 29.1 6.7 44 152-196 6-49 (55)
27 PRK14983 aldehyde decarbonylas 67.1 6.7 0.00015 40.0 4.0 60 136-195 139-200 (231)
28 PF11266 DUF3066: Protein of u 66.4 15 0.00032 37.3 6.2 49 147-195 141-190 (219)
29 PF07716 bZIP_2: Basic region 65.3 18 0.00038 28.8 5.3 30 151-180 23-52 (54)
30 PF04201 TPD52: Tumour protein 64.6 25 0.00054 34.8 7.2 45 153-197 29-77 (162)
31 PHA03155 hypothetical protein; 63.4 8.6 0.00019 36.0 3.6 25 154-178 9-33 (115)
32 PF15066 CAGE1: Cancer-associa 63.0 18 0.00039 41.0 6.6 44 155-198 399-442 (527)
33 PRK13169 DNA replication intia 61.8 16 0.00036 33.8 5.2 25 153-177 22-46 (110)
34 PF13851 GAS: Growth-arrest sp 61.1 34 0.00073 34.4 7.6 50 151-200 91-140 (201)
35 PHA03162 hypothetical protein; 60.3 11 0.00024 36.2 3.8 22 155-176 15-36 (135)
36 PF05812 Herpes_BLRF2: Herpesv 60.2 12 0.00027 35.2 4.1 26 155-180 5-30 (118)
37 PRK13923 putative spore coat p 60.2 19 0.00041 35.9 5.5 38 152-189 110-147 (170)
38 PF14775 NYD-SP28_assoc: Sperm 59.5 15 0.00032 30.5 4.0 26 153-178 33-58 (60)
39 PF02183 HALZ: Homeobox associ 58.1 24 0.00052 27.8 4.8 30 152-181 11-40 (45)
40 PF15294 Leu_zip: Leucine zipp 55.0 28 0.00061 37.1 6.1 38 156-193 128-172 (278)
41 PF15079 DUF4546: Domain of un 54.9 37 0.0008 34.1 6.5 44 149-196 50-93 (205)
42 PRK15422 septal ring assembly 54.5 64 0.0014 28.7 7.2 41 153-193 18-58 (79)
43 PF12711 Kinesin-relat_1: Kine 54.4 31 0.00068 30.9 5.4 35 149-183 27-67 (86)
44 KOG4378 Nuclear protein COP1 [ 54.1 9.5 0.00021 43.6 2.7 18 156-173 653-670 (673)
45 TIGR02894 DNA_bind_RsfA transc 53.9 53 0.0011 32.6 7.4 39 152-190 103-141 (161)
46 PF07407 Seadorna_VP6: Seadorn 53.7 27 0.00059 38.2 5.8 25 146-172 39-63 (420)
47 PF07875 Coat_F: Coat F domain 53.2 22 0.00049 28.9 4.1 31 167-197 27-57 (64)
48 KOG4005 Transcription factor X 52.8 42 0.00091 35.4 6.8 37 155-191 99-135 (292)
49 COG3105 Uncharacterized protei 51.8 54 0.0012 31.7 6.9 41 152-192 40-84 (138)
50 PF07407 Seadorna_VP6: Seadorn 50.6 41 0.00088 36.9 6.5 32 153-184 32-63 (420)
51 PF06696 Strep_SA_rep: Strepto 50.5 24 0.00052 25.1 3.2 19 154-172 6-24 (25)
52 PF15058 Speriolin_N: Sperioli 49.0 24 0.00051 35.9 4.3 30 155-184 7-36 (200)
53 PRK14161 heat shock protein Gr 48.6 80 0.0017 31.5 7.8 57 137-193 1-59 (178)
54 PRK13169 DNA replication intia 48.3 42 0.00092 31.2 5.5 36 154-189 9-44 (110)
55 KOG2070 Guanine nucleotide exc 48.2 46 0.001 38.3 6.7 46 148-193 611-656 (661)
56 PF08614 ATG16: Autophagy prot 48.1 68 0.0015 31.6 7.3 42 152-193 122-163 (194)
57 PF13118 DUF3972: Protein of u 47.7 45 0.00098 31.8 5.7 31 155-185 80-110 (126)
58 TIGR02209 ftsL_broad cell divi 46.8 41 0.00089 28.3 4.9 30 152-181 30-59 (85)
59 PF09789 DUF2353: Uncharacteri 45.9 59 0.0013 35.3 6.9 44 153-196 9-52 (319)
60 PF03112 DUF244: Uncharacteriz 45.4 40 0.00087 33.1 5.1 21 153-173 77-97 (158)
61 PF04111 APG6: Autophagy prote 45.4 86 0.0019 33.5 8.0 40 157-196 75-114 (314)
62 COG3352 FlaC Putative archaeal 45.0 62 0.0013 32.0 6.3 42 151-192 70-111 (157)
63 PRK14127 cell division protein 44.3 59 0.0013 30.2 5.8 37 155-191 32-68 (109)
64 COG3074 Uncharacterized protei 44.0 1.2E+02 0.0027 26.6 7.2 40 153-192 18-57 (79)
65 PF15619 Lebercilin: Ciliary p 43.9 80 0.0017 31.8 7.1 50 149-198 15-67 (194)
66 PF13094 CENP-Q: CENP-Q, a CEN 43.9 84 0.0018 29.9 7.0 43 154-196 42-84 (160)
67 COG4026 Uncharacterized protei 43.5 72 0.0016 33.6 6.8 41 153-193 135-175 (290)
68 PF01166 TSC22: TSC-22/dip/bun 41.2 41 0.0009 28.3 3.8 24 152-175 20-43 (59)
69 PF01920 Prefoldin_2: Prefoldi 40.8 42 0.00092 28.9 4.1 42 155-196 64-105 (106)
70 PF10198 Ada3: Histone acetylt 40.8 79 0.0017 30.1 6.2 43 145-187 32-74 (131)
71 PRK14148 heat shock protein Gr 40.2 67 0.0015 32.5 6.0 68 116-192 12-79 (195)
72 TIGR03689 pup_AAA proteasome A 40.1 50 0.0011 37.8 5.6 39 155-193 3-41 (512)
73 PF04420 CHD5: CHD5-like prote 40.1 87 0.0019 30.3 6.5 40 153-192 40-91 (161)
74 PF15233 SYCE1: Synaptonemal c 39.9 59 0.0013 31.4 5.1 37 155-191 36-72 (134)
75 PF10168 Nup88: Nuclear pore c 39.7 87 0.0019 37.3 7.7 45 154-198 580-624 (717)
76 PF12325 TMF_TATA_bd: TATA ele 39.2 1.3E+02 0.0029 28.3 7.3 14 152-165 29-42 (120)
77 PF06005 DUF904: Protein of un 39.1 1.1E+02 0.0024 26.4 6.3 29 157-185 36-64 (72)
78 PRK10884 SH3 domain-containing 39.1 1.2E+02 0.0027 30.8 7.6 42 152-193 99-151 (206)
79 PF13815 Dzip-like_N: Iguana/D 38.9 82 0.0018 28.9 5.9 36 153-188 80-115 (118)
80 PF05529 Bap31: B-cell recepto 38.7 51 0.0011 32.2 4.8 35 158-192 152-186 (192)
81 KOG4010 Coiled-coil protein TP 37.9 1.2E+02 0.0027 31.0 7.3 38 153-190 44-81 (208)
82 PF11932 DUF3450: Protein of u 37.3 1.4E+02 0.0029 30.6 7.7 40 154-193 57-96 (251)
83 PF11830 DUF3350: Domain of un 37.2 37 0.00081 28.4 3.0 27 147-173 23-56 (56)
84 PRK13922 rod shape-determining 36.9 81 0.0017 32.4 6.1 26 157-182 66-91 (276)
85 PF09730 BicD: Microtubule-ass 36.4 81 0.0018 37.7 6.7 37 153-189 41-77 (717)
86 PRK09413 IS2 repressor TnpA; R 36.1 60 0.0013 29.6 4.5 25 152-176 77-101 (121)
87 PF15035 Rootletin: Ciliary ro 35.7 93 0.002 31.0 6.1 36 156-191 84-119 (182)
88 PRK10884 SH3 domain-containing 35.1 1.3E+02 0.0028 30.6 7.1 38 155-192 127-164 (206)
89 PF03962 Mnd1: Mnd1 family; I 34.5 1.3E+02 0.0027 30.1 6.8 31 162-192 137-167 (188)
90 KOG3705 Glycoprotein 6-alpha-L 34.4 52 0.0011 37.2 4.4 43 153-195 44-86 (580)
91 PF13851 GAS: Growth-arrest sp 34.4 1.2E+02 0.0025 30.6 6.6 38 156-193 44-81 (201)
92 PF14282 FlxA: FlxA-like prote 33.7 2.2E+02 0.0047 25.9 7.6 49 149-197 22-74 (106)
93 TIGR00219 mreC rod shape-deter 33.5 76 0.0017 33.4 5.4 12 165-176 96-107 (283)
94 PF10482 CtIP_N: Tumour-suppre 33.4 45 0.00097 31.6 3.2 22 155-176 98-119 (120)
95 PRK14127 cell division protein 33.2 77 0.0017 29.5 4.7 36 152-187 36-71 (109)
96 PF08826 DMPK_coil: DMPK coile 33.0 1.7E+02 0.0037 24.7 6.3 37 157-193 15-51 (61)
97 PRK13729 conjugal transfer pil 32.5 94 0.002 35.5 6.1 39 153-191 83-121 (475)
98 PF12999 PRKCSH-like: Glucosid 31.5 2.9E+02 0.0064 27.8 8.7 42 152-193 124-165 (176)
99 COG5124 Protein predicted to b 31.4 1.4E+02 0.003 30.5 6.5 27 153-179 82-108 (209)
100 PF10226 DUF2216: Uncharacteri 31.3 54 0.0012 33.3 3.7 24 153-176 55-78 (195)
101 KOG4673 Transcription factor T 31.3 1.3E+02 0.0027 36.2 7.0 43 155-197 882-927 (961)
102 PF04888 SseC: Secretion syste 30.8 1.6E+02 0.0035 30.7 7.3 44 153-196 244-287 (306)
103 PF12808 Mto2_bdg: Micro-tubul 30.6 77 0.0017 26.1 3.8 25 155-179 24-48 (52)
104 PF04999 FtsL: Cell division p 30.2 76 0.0016 27.7 4.0 27 153-179 42-68 (97)
105 PF06305 DUF1049: Protein of u 30.2 48 0.001 26.8 2.6 24 150-173 45-68 (68)
106 PF03962 Mnd1: Mnd1 family; I 29.9 1.9E+02 0.0041 28.9 7.2 28 152-179 68-95 (188)
107 PF10224 DUF2205: Predicted co 29.8 1.7E+02 0.0036 26.0 6.0 37 154-197 31-67 (80)
108 PF07334 IFP_35_N: Interferon- 29.8 1E+02 0.0022 27.3 4.6 16 163-178 3-18 (76)
109 PF05377 FlaC_arch: Flagella a 29.2 1.5E+02 0.0034 24.7 5.3 32 152-183 13-44 (55)
110 PF14662 CCDC155: Coiled-coil 28.6 1.8E+02 0.004 29.7 6.8 41 152-192 94-134 (193)
111 PF07526 POX: Associated with 28.2 1.3E+02 0.0029 28.8 5.6 34 160-196 73-106 (140)
112 PF09726 Macoilin: Transmembra 27.6 3.4E+02 0.0073 32.5 9.8 47 152-198 424-484 (697)
113 PF09755 DUF2046: Uncharacteri 27.5 1.7E+02 0.0037 31.9 6.8 39 155-193 256-294 (310)
114 PF07106 TBPIP: Tat binding pr 27.4 2.5E+02 0.0054 27.0 7.3 24 153-176 79-102 (169)
115 PRK14143 heat shock protein Gr 27.2 2.7E+02 0.0059 29.1 8.0 40 153-192 67-106 (238)
116 PF14662 CCDC155: Coiled-coil 27.2 2.1E+02 0.0047 29.2 7.0 39 149-187 18-56 (193)
117 PF11365 DUF3166: Protein of u 26.1 1.3E+02 0.0028 27.5 4.8 26 152-177 14-39 (96)
118 TIGR03752 conj_TIGR03752 integ 26.1 1.6E+02 0.0034 33.8 6.4 42 153-194 66-107 (472)
119 smart00340 HALZ homeobox assoc 25.6 1.5E+02 0.0033 23.8 4.4 23 157-179 9-31 (44)
120 KOG4005 Transcription factor X 25.1 2.1E+02 0.0046 30.4 6.7 47 149-195 86-135 (292)
121 KOG0995 Centromere-associated 25.0 1E+02 0.0022 36.0 4.8 27 154-180 295-321 (581)
122 PF05384 DegS: Sensor protein 24.6 2.8E+02 0.006 27.4 7.1 39 154-192 28-66 (159)
123 PF10211 Ax_dynein_light: Axon 24.4 1.8E+02 0.0039 29.0 6.0 44 155-198 122-165 (189)
124 PF12017 Tnp_P_element: Transp 24.4 1.9E+02 0.0041 30.1 6.2 42 151-192 16-57 (236)
125 KOG2129 Uncharacterized conser 24.0 1.9E+02 0.0041 33.0 6.4 36 155-190 280-315 (552)
126 PF01486 K-box: K-box region; 23.9 1.1E+02 0.0023 27.2 3.8 25 153-177 75-99 (100)
127 TIGR02338 gimC_beta prefoldin, 23.9 2.6E+02 0.0056 25.3 6.4 41 155-195 69-109 (110)
128 PRK05771 V-type ATP synthase s 23.7 2.2E+02 0.0048 33.1 7.3 47 152-198 214-260 (646)
129 PRK14162 heat shock protein Gr 23.3 2.5E+02 0.0053 28.5 6.7 44 150-193 36-79 (194)
130 KOG0804 Cytoplasmic Zn-finger 23.2 2.5E+02 0.0055 32.2 7.3 40 154-193 390-429 (493)
131 PF04156 IncA: IncA protein; 22.9 3.2E+02 0.007 26.3 7.2 38 150-187 85-122 (191)
132 KOG1962 B-cell receptor-associ 22.8 1.9E+02 0.0041 30.0 5.8 35 158-192 149-183 (216)
133 COG4467 Regulator of replicati 22.6 1.1E+02 0.0023 28.9 3.6 25 152-176 28-52 (114)
134 PF12709 Kinetocho_Slk19: Cent 22.5 2.6E+02 0.0057 25.3 5.9 31 153-183 49-79 (87)
135 PHA00327 minor capsid protein 22.4 74 0.0016 31.9 2.7 52 123-174 74-129 (187)
136 PRK10803 tol-pal system protei 22.4 2.4E+02 0.0052 29.4 6.6 38 155-192 56-93 (263)
137 PF08172 CASP_C: CASP C termin 22.4 2.4E+02 0.0052 29.5 6.6 51 146-197 86-136 (248)
138 PF04111 APG6: Autophagy prote 22.4 2.7E+02 0.0058 29.9 7.1 36 154-189 58-93 (314)
139 PF12107 VEK-30: Plasminogen ( 21.9 73 0.0016 20.9 1.7 11 159-169 2-12 (17)
140 COG2433 Uncharacterized conser 21.9 1.6E+02 0.0034 34.9 5.6 33 152-184 435-467 (652)
141 PF12325 TMF_TATA_bd: TATA ele 21.8 2.7E+02 0.0058 26.2 6.2 43 154-196 45-90 (120)
142 PF09755 DUF2046: Uncharacteri 21.7 4.4E+02 0.0096 28.8 8.5 41 152-192 26-66 (310)
143 smart00574 POX domain associat 21.4 2.2E+02 0.0048 27.8 5.6 28 169-196 79-106 (140)
144 PF12711 Kinesin-relat_1: Kine 21.3 2.2E+02 0.0048 25.6 5.2 23 154-176 45-67 (86)
145 PF04822 Takusan: Takusan; In 21.2 4E+02 0.0087 23.8 6.8 47 148-194 13-69 (84)
146 PF13874 Nup54: Nucleoporin co 20.7 5.1E+02 0.011 24.5 7.9 44 155-198 53-96 (141)
147 KOG0977 Nuclear envelope prote 20.7 2.7E+02 0.0059 32.5 7.1 35 147-181 156-190 (546)
148 PF11559 ADIP: Afadin- and alp 20.4 4.5E+02 0.0097 24.7 7.5 36 156-191 55-90 (151)
149 PLN03097 FHY3 Protein FAR-RED 20.2 95 0.0021 37.8 3.6 36 353-390 156-191 (846)
No 1
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=99.96 E-value=9.6e-30 Score=205.89 Aligned_cols=59 Identities=59% Similarity=1.223 Sum_probs=57.2
Q ss_pred CCCchhHhHhccccccCCCCCCCcccccCCCCCccccceeeecCCCcEEEEEecccCCC
Q 007546 327 INDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNH 385 (599)
Q Consensus 327 ~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a~gCpvkKqVQr~~~D~si~~tTY~G~HnH 385 (599)
++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus 1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 47999999999999999999999999999789999999999999999999999999998
No 2
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=99.95 E-value=4e-30 Score=208.40 Aligned_cols=59 Identities=66% Similarity=1.300 Sum_probs=52.2
Q ss_pred CCCchhHhHhccccccCCCCCCCcccccCCCCCccccceeeecCCCcEEEEEecccCCCC
Q 007546 327 INDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHP 386 (599)
Q Consensus 327 ~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a~gCpvkKqVQr~~~D~si~~tTY~G~HnH~ 386 (599)
++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 479999999999999999999999999995 99999999999999999999999999997
No 3
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=92.68 E-value=0.057 Score=45.74 Aligned_cols=32 Identities=41% Similarity=0.698 Sum_probs=27.9
Q ss_pred CCCccccceeeecCCCcEEEEEecccCCCCCCh
Q 007546 357 AGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 389 (599)
Q Consensus 357 ~gCpvkKqVQr~~~D~si~~tTY~G~HnH~~p~ 389 (599)
.+|+++=.|-+.. |....++.+..+|||++-|
T Consensus 60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P 91 (91)
T PF03101_consen 60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP 91 (91)
T ss_pred cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence 5999999998877 7778899999999999854
No 4
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=88.84 E-value=0.12 Score=40.19 Aligned_cols=50 Identities=28% Similarity=0.586 Sum_probs=25.9
Q ss_pred CCCCchhHhHhccccccCCCCCCCcccccCC--CCCccccceeeecCCCcEEEEEecccCCC
Q 007546 326 MINDGCQWRKYGQKMAKGNPCPRAYYRCTMA--AGCPVRKQVQRCAEDRTILITTYEGNHNH 385 (599)
Q Consensus 326 ~~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a--~gCpvkKqVQr~~~D~si~~tTY~G~HnH 385 (599)
++-|||.-+++... ..+.|+||+.. .+|+|+-.+. .++. .++...++|||
T Consensus 11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH 62 (62)
T PF04500_consen 11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH 62 (62)
T ss_dssp EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence 45689887765554 34689999985 3799988777 3444 33444599998
No 5
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=88.84 E-value=0.98 Score=44.27 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=36.3
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007546 147 EDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQL 188 (599)
Q Consensus 147 edkr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQm 188 (599)
|.++.+.|++.|+.+++.+..||++|+.=+..|.++|.+|=.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566789999999999999999999999999999999743
No 6
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=87.02 E-value=0.7 Score=48.25 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYN 184 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYn 184 (599)
+..--.++.++.+||++||.=|.++...+.
T Consensus 61 ~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 61 ISENLKDVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445777788888888876666544433
No 7
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.94 E-value=3 Score=34.04 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=36.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL 190 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql 190 (599)
+.+..+..|+.++..+..||..|+.-+..+...+..|+...
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567999999999999999999999999999999998764
No 8
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=85.71 E-value=4.7 Score=45.25 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
.+-..+++|+.|.++|++|+=.|+.+--+.|+.++..+++-||+
T Consensus 428 ~~s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~~~~~~i~ee~~~ 471 (476)
T KOG0646|consen 428 TRSLELEAEVDRLKTELKRSLQALTHAYKELRNMLEEIYEEHQQ 471 (476)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999888876665
No 9
>PRK11677 hypothetical protein; Provisional
Probab=85.34 E-value=3 Score=39.73 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=35.1
Q ss_pred hhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAEN----QRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eEN----kRLk~ML~qv~~nYnaLQmql~~ 192 (599)
+.+.||+.++.||++.+.|= -+--+||++|.++|+.|+.||..
T Consensus 33 ~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 33 ALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888877663 35678999999999999999965
No 10
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.23 E-value=2.5 Score=43.85 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+..+|++|.|+.-||-+|.+||..+--.|..|..+|-.+
T Consensus 165 ~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 165 YEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 444556666666777788888888888888888888765
No 11
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=82.05 E-value=4.9 Score=37.52 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=33.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHH
Q 007546 151 AKNEYAVVQAELERVNAENQR----LKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 151 ~K~Ela~Lq~EL~Rv~eENkR----Lk~ML~qv~~nYnaLQmql~~ 192 (599)
.+.||+.++.||++.+.|=.. =-++|++|+++|+.|+.||.+
T Consensus 30 l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~ 75 (128)
T PF06295_consen 30 LEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAK 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888876433 335999999999999999865
No 12
>PF14645 Chibby: Chibby family
Probab=81.81 E-value=6.4 Score=36.56 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=32.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007546 148 DKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL 190 (599)
Q Consensus 148 dkr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql 190 (599)
..+.++|..+|++|-+-++-+++-|=+||.+.+-+|+.++.+|
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444566777777777777777778899999999998887764
No 13
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=80.95 E-value=1.9 Score=44.12 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
+..+++|.+++++||.+|+.-+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444443
No 14
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=78.81 E-value=5.7 Score=38.02 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
-..|+.|++++++||.+|+.=|+-....|.+||.--+
T Consensus 83 k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 83 KAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4468899999999999999999999999999986544
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.43 E-value=12 Score=32.27 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 153 NEYAVVQAELERVNAE-------NQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eE-------NkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
+.++.||.|+++++++ |..|+.-..++...+++.|-|+-.++.+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777775 7778888888888899999888887765
No 16
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=77.19 E-value=2.6 Score=44.18 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
|+..++.|+..+++||+|||++|+
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555566666666665554
No 17
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=75.36 E-value=9.1 Score=40.87 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+.|.+.|..|++.+..+|++||+-++++.+.-..|+.-|.++
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999998766664
No 18
>smart00338 BRLZ basic region leucin zipper.
Probab=75.21 E-value=12 Score=30.50 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=34.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL 190 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql 190 (599)
+.+..+..|+.++..+..||..|+.=++.+...+..|..++
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456889999999999999999999988888888777654
No 19
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.60 E-value=8.4 Score=35.00 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=29.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNY 183 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nY 183 (599)
..+.|++.++.|+.++++||++|+.=+..+..+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~ 64 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ 64 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Confidence 3456789999999999999999999998888764
No 20
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=72.68 E-value=9.2 Score=31.45 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=30.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNAL 186 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaL 186 (599)
..+.|+..|+.++.++++||++|+.-++.+.++-..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4456899999999999999999999999985554444
No 21
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.28 E-value=12 Score=42.22 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=18.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 151 AKNEYAVVQAELERVNAENQRLKDMVNE 178 (599)
Q Consensus 151 ~K~Ela~Lq~EL~Rv~eENkRLk~ML~q 178 (599)
.+.|+..|..|=+++++||+|||.+...
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456666777777777777777774443
No 22
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=71.23 E-value=4.2 Score=41.20 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
++..+++||.++++||..|+++.+++
T Consensus 133 ~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 133 EIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777766554
No 23
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=70.41 E-value=7.4 Score=33.78 Aligned_cols=36 Identities=33% Similarity=0.568 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNA-LQLQL 190 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYna-LQmql 190 (599)
.+..|-.+|++++..|+.| +++.+|+++|+. .|-+|
T Consensus 26 sv~~lN~~l~eIn~~N~~l-e~~~qm~enY~~nv~fnL 62 (72)
T PF08650_consen 26 SVAELNQELEEINRANKNL-EIVAQMWENYQRNVQFNL 62 (72)
T ss_pred HHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999 999999999974 44444
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.45 E-value=11 Score=34.60 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKD 174 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ 174 (599)
.+++.|+.+|..+-|||.+|+.
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666653
No 25
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=68.94 E-value=16 Score=37.56 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=38.0
Q ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007546 153 NEYAV----VQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFM 194 (599)
Q Consensus 153 ~Ela~----Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lm 194 (599)
.||++ +++||+|.++|=.+|+.+|..+++.=-..|-|+-.+|
T Consensus 15 lELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 15 LELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47887 7999999999999999999999999999998887776
No 26
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=67.34 E-value=26 Score=29.07 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
..++..+..+++-++.||+.|++-|+.|.++-..|=+ |++++.+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~Vs~ 49 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLLS-LYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence 3567888888999999999999999999999877743 4555444
No 27
>PRK14983 aldehyde decarbonylase; Provisional
Probab=67.13 E-value=6.7 Score=40.03 Aligned_cols=60 Identities=27% Similarity=0.372 Sum_probs=47.6
Q ss_pred ccccCCCC-cchhhhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Q 007546 136 STVDDGIS-TNMEDKKAKNEYAVVQAELERVNAENQRL-KDMVNEVTNNYNALQLQLMAFMQ 195 (599)
Q Consensus 136 S~vDDg~S-s~~edkr~K~Ela~Lq~EL~Rv~eENkRL-k~ML~qv~~nYnaLQmql~~lmQ 195 (599)
..|.|.-. .+-...|-|.-++..++||++++.||--| +.||+||..+-..|.|-=.++|.
T Consensus 139 gVVkDEY~HLN~Ge~WLk~~f~~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lve 200 (231)
T PRK14983 139 GVVKDEYLHLNFGEEWLKANFETSKDELEEANKENLPLVWKMLNQVADDAAVLGMEKEALVE 200 (231)
T ss_pred hHHhhHHHhcchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555433 34556788888999999999999999866 79999999999999997666554
No 28
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=66.44 E-value=15 Score=37.32 Aligned_cols=49 Identities=29% Similarity=0.384 Sum_probs=40.3
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Q 007546 147 EDKKAKNEYAVVQAELERVNAENQRL-KDMVNEVTNNYNALQLQLMAFMQ 195 (599)
Q Consensus 147 edkr~K~Ela~Lq~EL~Rv~eENkRL-k~ML~qv~~nYnaLQmql~~lmQ 195 (599)
...|-|.-++..++||++++.||--| +.||+||..+-..|.|-=.++|.
T Consensus 141 Ge~WLk~~f~~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~lve 190 (219)
T PF11266_consen 141 GEEWLKANFEQSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEALVE 190 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 35677888999999999999999876 78999999999999997666654
No 29
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=65.30 E-value=18 Score=28.82 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=24.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 151 AKNEYAVVQAELERVNAENQRLKDMVNEVT 180 (599)
Q Consensus 151 ~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~ 180 (599)
.|.....|+.++..+.+||..|+..+..+.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677889999999999999988887764
No 30
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=64.59 E-value=25 Score=34.83 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHhh
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL----MAFMQHH 197 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql----~~lmQqq 197 (599)
.|-+.|+.||.+|.||-+-||..|-.=.+....|+.+| +.-|+|.
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqn 77 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQN 77 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHH
Confidence 45677999999999999999999999999999999987 4444553
No 31
>PHA03155 hypothetical protein; Provisional
Probab=63.38 E-value=8.6 Score=36.03 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNE 178 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~q 178 (599)
-++.|.+||.|++-||+.||.-|-+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3677999999999999999977644
No 32
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.97 E-value=18 Score=41.00 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq~ 198 (599)
|+..|-.|.+.+.|++-|-.=|..|.-+|..||-+.+..||+.+
T Consensus 399 la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 399 LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 77889999999999999999999999999999999999999865
No 33
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.85 E-value=16 Score=33.80 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
.|++.|+.+|..+-|||.+|+.--+
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888787777775543
No 34
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.09 E-value=34 Score=34.36 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=43.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 007546 151 AKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHNAK 200 (599)
Q Consensus 151 ~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq~~~ 200 (599)
.+..+..++.||..++-|++-|..-+.+|...+..|+.+|...++.-+++
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999999999999999999988765544
No 35
>PHA03162 hypothetical protein; Provisional
Probab=60.30 E-value=11 Score=36.17 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML 176 (599)
++.|.+||.|++.||+.||.-|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999877
No 36
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=60.24 E-value=12 Score=35.16 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVT 180 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~ 180 (599)
++.|.+||.+++.||+.||.-|-+-.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 67899999999999999997655443
No 37
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=60.16 E-value=19 Score=35.86 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQ 189 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmq 189 (599)
+.++..|+.+.++...||++|+.=+..+.++|.+|-..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~I 147 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVI 147 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999997543
No 38
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=59.46 E-value=15 Score=30.54 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNE 178 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~q 178 (599)
.+-+.|..|-+.+.+||..||.+|.|
T Consensus 33 ~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 33 LDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999976
No 39
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.07 E-value=24 Score=27.84 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTN 181 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~ 181 (599)
|.....|++|-.++..||++|+.+|..+..
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778899999999999999988877654
No 40
>PF15294 Leu_zip: Leucine zipper
Probab=55.03 E-value=28 Score=37.06 Aligned_cols=38 Identities=24% Similarity=0.496 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHH
Q 007546 156 AVVQAELERVNAENQRLKDMVNEVTNN-------YNALQLQLMAF 193 (599)
Q Consensus 156 a~Lq~EL~Rv~eENkRLk~ML~qv~~n-------YnaLQmql~~l 193 (599)
+-|..|+.|+++||++||.-|-.+.+. =..|+.+|-++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999999999966554444 45677787775
No 41
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=54.88 E-value=37 Score=34.12 Aligned_cols=44 Identities=25% Similarity=0.467 Sum_probs=34.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 149 KKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 149 kr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
+.-|+||..+++||.+-.||-+.+|.+. -++|--||- |++||..
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiM---DKDFDKL~E-FVEIMKe 93 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIM---DKDFDKLHE-FVEIMKE 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHH-HHHHHHH
Confidence 4457899999999999999988888665 478888875 6777754
No 42
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.46 E-value=64 Score=28.66 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+.++-||.|++++|++|..|..=...+...-.+|...--.+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45778999999999999999998887777766676665554
No 43
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=54.36 E-value=31 Score=30.86 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=26.9
Q ss_pred hhhHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhH
Q 007546 149 KKAKNEYAVVQA------ELERVNAENQRLKDMVNEVTNNY 183 (599)
Q Consensus 149 kr~K~Ela~Lq~------EL~Rv~eENkRLk~ML~qv~~nY 183 (599)
+.-++|+..|++ ||-|-..||.||++.|.++-.=|
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888886 67788899999999988766555
No 44
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=54.09 E-value=9.5 Score=43.61 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007546 156 AVVQAELERVNAENQRLK 173 (599)
Q Consensus 156 a~Lq~EL~Rv~eENkRLk 173 (599)
+.|++||++++||||+||
T Consensus 653 e~l~aelk~lreenq~lr 670 (673)
T KOG4378|consen 653 EMLKAELKFLREENQTLR 670 (673)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 346677777777777776
No 45
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=53.87 E-value=53 Score=32.57 Aligned_cols=39 Identities=10% Similarity=0.261 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL 190 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql 190 (599)
+.|...|+.|+.++.++|+.|..=+..+.+.+..++--+
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555443
No 46
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=53.68 E-value=27 Score=38.22 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=12.9
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 007546 146 MEDKKAKNEYAVVQAELERVNAENQRL 172 (599)
Q Consensus 146 ~edkr~K~Ela~Lq~EL~Rv~eENkRL 172 (599)
+|+.+-|.|.+.|+.|++|+ ||.+|
T Consensus 39 ~EN~~LKkEN~~Lk~eVerL--E~e~l 63 (420)
T PF07407_consen 39 MENHSLKKENNDLKIEVERL--ENEML 63 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHH--HHHhh
Confidence 34444455555555555555 44444
No 47
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=53.16 E-value=22 Score=28.95 Aligned_cols=31 Identities=19% Similarity=0.535 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007546 167 AENQRLKDMVNEVTNNYNALQLQLMAFMQHH 197 (599)
Q Consensus 167 eENkRLk~ML~qv~~nYnaLQmql~~lmQqq 197 (599)
..|..||..|.++.+....+|.+++++|.++
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~~k 57 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMNQK 57 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999884
No 48
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=52.76 E-value=42 Score=35.37 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
+..|.+|=+++..||++||..=.-+...-+.|.+.|.
T Consensus 99 i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455666666666666666666666666666766664
No 49
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.78 E-value=54 Score=31.67 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQ----RLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENk----RLk~ML~qv~~nYnaLQmql~~ 192 (599)
..||+.+|.+|+.-+.|=. +=-+||+.+..+|..|+.|+.+
T Consensus 40 q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~ 84 (138)
T COG3105 40 QYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAK 84 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777654 3568999999999999999876
No 50
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=50.64 E-value=41 Score=36.93 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYN 184 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYn 184 (599)
.|+..||.|=.++|.||..||.=|+++.++..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999988888866554
No 51
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=50.51 E-value=24 Score=25.07 Aligned_cols=19 Identities=42% Similarity=0.447 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRL 172 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRL 172 (599)
.|+.-++||.||+.+|...
T Consensus 6 kla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 6 KLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4788999999999999875
No 52
>PF15058 Speriolin_N: Speriolin N terminus
Probab=49.01 E-value=24 Score=35.94 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYN 184 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYn 184 (599)
.+.|+..|+|+..||++||..+.-|.+|+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN~e 36 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRENHE 36 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 456888999999999999999998888853
No 53
>PRK14161 heat shock protein GrpE; Provisional
Probab=48.61 E-value=80 Score=31.46 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=40.4
Q ss_pred cccCCCCcchhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 137 TVDDGISTNMEDKKA--KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 137 ~vDDg~Ss~~edkr~--K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
|+||.+-.+.+.--. .+-++++++||..+.+|.+.|+..|-++.-+|-.++.+...-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 1 MIDDNIENNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred CCCccccccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567766554443322 233888999999999998888888888888887777776543
No 54
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.30 E-value=42 Score=31.17 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQ 189 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmq 189 (599)
.+..|..-|+.+-+|=..||..|.++.+.=.+|++-
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555556666666665555555543
No 55
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=48.22 E-value=46 Score=38.34 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=36.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 148 DKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 148 dkr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+|....-+-+|+.|+.+++.||+|+|..|++=-+--..|+.-|..+
T Consensus 611 ekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~ 656 (661)
T KOG2070|consen 611 EKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKM 656 (661)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345778999999999999999999999888888887766654
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.09 E-value=68 Score=31.58 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+.++..|+.++....+|-+.+...+..+...|-+||++|..+
T Consensus 122 ~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 122 EAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888889999999999998654
No 57
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=47.71 E-value=45 Score=31.83 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNA 185 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYna 185 (599)
|++.++=|+-+++||+=||+-|-.|-+-|-.
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~e 110 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEE 110 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777999999999999999999999943
No 58
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=46.80 E-value=41 Score=28.35 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTN 181 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~ 181 (599)
..+++.++.|+.+.++||.+|+.-+..+..
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467888999999999999999887776654
No 59
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.87 E-value=59 Score=35.30 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
+.|-.|-.||+.-.+|=..+|.|.+++.+.|.+|+....+++++
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~ 52 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQE 52 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34889999999999999999999999999999999999888755
No 60
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=45.39 E-value=40 Score=33.14 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLK 173 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk 173 (599)
.|+..||.||+++..||++..
T Consensus 77 ~EI~~lq~ElnKiqnEn~k~e 97 (158)
T PF03112_consen 77 MEIDSLQTELNKIQNENKKRE 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999999999863
No 61
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.36 E-value=86 Score=33.54 Aligned_cols=40 Identities=33% Similarity=0.506 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 157 VVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 157 ~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
.|..||..+.+|=++|+..-.+.-+.|+.||+++..+.++
T Consensus 75 ~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e 114 (314)
T PF04111_consen 75 ELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEE 114 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555566677888888888876443
No 62
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=44.99 E-value=62 Score=31.95 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=36.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 151 AKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 151 ~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
.++.++..++||+|+.++=|+|.+.++.|..+.|-+.-++..
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~q 111 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQ 111 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHH
Confidence 456688899999999999999999999999999988766543
No 63
>PRK14127 cell division protein GpsB; Provisional
Probab=44.25 E-value=59 Score=30.22 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
|..+-.+++++..||.+|++.+.++.+.-..|+.++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666677777777777777777766666566666554
No 64
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.99 E-value=1.2e+02 Score=26.61 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
+-+.-||.|++++||+|..|..-....-..--+|+..=..
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneq 57 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQ 57 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3466799999999999998876665555555555544333
No 65
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=43.90 E-value=80 Score=31.77 Aligned_cols=50 Identities=30% Similarity=0.492 Sum_probs=38.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHhhh
Q 007546 149 KKAKNEYAVVQAELERVNAENQRLKDMVNE---VTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 149 kr~K~Ela~Lq~EL~Rv~eENkRLk~ML~q---v~~nYnaLQmql~~lmQqq~ 198 (599)
++-++++..|+.+|.++..||+-||.+--+ --..|-.-+..|-.+|+++.
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 345679999999999999999999988665 23556566666767776654
No 66
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=43.89 E-value=84 Score=29.91 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
.++.|++|+.++..+.++-.+.|.++.++-.+++..+-..+.+
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4668999999999999999999999999999999888765433
No 67
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.53 E-value=72 Score=33.55 Aligned_cols=41 Identities=22% Similarity=0.452 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.-+..+++.|++..+||.-|+.-|+++...|.++|-+|-.+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777788888888888888888888888888887665
No 68
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=41.19 E-value=41 Score=28.35 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDM 175 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~M 175 (599)
|+.++.|++.+.++..||..||..
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777788777753
No 69
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.77 E-value=42 Score=28.94 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
+..|+.++..+.+|=++|+..+..+.+.+..|+..|..++++
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567889999999999999999999999999999998876554
No 70
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=40.76 E-value=79 Score=30.05 Aligned_cols=43 Identities=30% Similarity=0.286 Sum_probs=34.1
Q ss_pred chhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007546 145 NMEDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQ 187 (599)
Q Consensus 145 ~~edkr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQ 187 (599)
+.+|...-.||..||.||..+...|+..+..|-.+++.--+-|
T Consensus 32 ~~eDDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~Q 74 (131)
T PF10198_consen 32 NREDDEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQ 74 (131)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678999999999999999999999988887644433
No 71
>PRK14148 heat shock protein GrpE; Provisional
Probab=40.19 E-value=67 Score=32.50 Aligned_cols=68 Identities=10% Similarity=0.198 Sum_probs=43.1
Q ss_pred ccccccccccccccCCCCCCccccCCCCcchhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 116 LELNVNTGLNLLTTNTSSDHSTVDDGISTNMEDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 116 ~~~~VNTGLnLLT~ntgSDqS~vDDg~Ss~~edkr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
..++|-|.-++-|+.+..+. +.+.-....++..|+++|..+++|.+.|+..|-+..-+|-.++.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~---------~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 12 KSLDIETAAQVETAQESASG---------ALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred cccchHHHHHhhhcchhhhh---------hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777666554221 122222234567788888888888888887777777777777776644
No 72
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=40.12 E-value=50 Score=37.81 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+..|+.++..+.+.|+||.++|.+.......|+.++-.+
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 41 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQL 41 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999876
No 73
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.07 E-value=87 Score=30.31 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQ------------RLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENk------------RLk~ML~qv~~nYnaLQmql~~ 192 (599)
.|...|+.|+.++++|.. ||+.-++++.+.+..|+..+..
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777775 6888888888888888877654
No 74
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=39.91 E-value=59 Score=31.38 Aligned_cols=37 Identities=27% Similarity=0.484 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
-.+|+.||..++.|--+|++.|+.--+-|+-||.|--
T Consensus 36 ~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcq 72 (134)
T PF15233_consen 36 WEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQ 72 (134)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999988753
No 75
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.65 E-value=87 Score=37.31 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq~ 198 (599)
||..+++|++.+++.-++|.+-++++.+.+..|..++-.+||.-+
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577788888888888888888899999999999998888877643
No 76
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.21 E-value=1.3e+02 Score=28.27 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=8.1
Q ss_pred HhHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERV 165 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv 165 (599)
..|+..++.||.++
T Consensus 29 E~E~~~l~~el~~l 42 (120)
T PF12325_consen 29 EGELASLQEELARL 42 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666655
No 77
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.10 E-value=1.1e+02 Score=26.37 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007546 157 VVQAELERVNAENQRLKDMVNEVTNNYNA 185 (599)
Q Consensus 157 ~Lq~EL~Rv~eENkRLk~ML~qv~~nYna 185 (599)
.|+.|-..+++||++|+.=-..+...-.+
T Consensus 36 ~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 36 ELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555444444433333
No 78
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.07 E-value=1.2e+02 Score=30.78 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKD-----------MVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~-----------ML~qv~~nYnaLQmql~~l 193 (599)
+.|++.|++||.++..+....+. -+.++.+.|..|+.+|..+
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666555333222 2222666666666666554
No 79
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.85 E-value=82 Score=28.89 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQL 188 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQm 188 (599)
.++..|++++..+.+|+++|+..+.+..+.-..|+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888888888777766666653
No 80
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.66 E-value=51 Score=32.17 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 158 VQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 158 Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
.++|....++|-++|+.=|++...++.+|+.|...
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777554
No 81
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=37.94 E-value=1.2e+02 Score=30.97 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL 190 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql 190 (599)
.|-+.|+.||-+|.||-.-||.+|.-=.+....|..+|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44557999999999999999999999888888888877
No 82
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.30 E-value=1.4e+02 Score=30.55 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
|+..|+.|++.++..|++|...++...+.-..|+.++-.+
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666665554
No 83
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=37.20 E-value=37 Score=28.35 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=18.9
Q ss_pred hhhhhHhHHHHH-------HHHHHHHHHHHHHHH
Q 007546 147 EDKKAKNEYAVV-------QAELERVNAENQRLK 173 (599)
Q Consensus 147 edkr~K~Ela~L-------q~EL~Rv~eENkRLk 173 (599)
..+|.++||..| |.=|-||..||+||+
T Consensus 23 ~~krt~eelR~LWrkAI~QqIlL~RMEKEN~kLq 56 (56)
T PF11830_consen 23 KKKRTREELRELWRKAIHQQILLLRMEKENQKLQ 56 (56)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345556665543 456899999999984
No 84
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=36.90 E-value=81 Score=32.39 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007546 157 VVQAELERVNAENQRLKDMVNEVTNN 182 (599)
Q Consensus 157 ~Lq~EL~Rv~eENkRLk~ML~qv~~n 182 (599)
..-..+.++.+||++||.=+.++...
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~ 91 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESR 91 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777666554433
No 85
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.38 E-value=81 Score=37.71 Aligned_cols=37 Identities=35% Similarity=0.557 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQ 189 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmq 189 (599)
.|+..++.|+.|+..||.||..+...+.+++-.|..+
T Consensus 41 ~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~ 77 (717)
T PF09730_consen 41 NELKQLRQELSNVQAENERLSQLNQELRKECEDLELE 77 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888889999999888887777666554443
No 86
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.13 E-value=60 Score=29.63 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML 176 (599)
+.|+..|+.||+++..||.-||.-+
T Consensus 77 ~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 77 MKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777776666543
No 87
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.67 E-value=93 Score=31.05 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 156 AVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 156 a~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
+.|++.|+.++..|+.|+.=|.+++.++..|+-.|.
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999999999999999987764
No 88
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.10 E-value=1.3e+02 Score=30.57 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
++.+..++.++++||++|++=|.++.+.=..|+.++-+
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667888888877777766666666665544
No 89
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.54 E-value=1.3e+02 Score=30.06 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 162 LERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 162 L~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
++++++|.++++.-+++.+.|+..|+-.+..
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3477888889999999999999999988765
No 90
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.43 E-value=52 Score=37.18 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQ 195 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQ 195 (599)
.++.+..+-|+++++.|+-||.||+.+...-+.=|...+..++
T Consensus 44 R~~sq~l~~le~l~qqNEdLk~~~e~lr~~~~~d~~~am~~v~ 86 (580)
T KOG3705|consen 44 RAWSQTLEALEKLQQQNEDLKSILEKLRQERNDDHKKAMEQVH 86 (580)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccchhhHHHHHh
Confidence 3577888899999999999999999998887733333444333
No 91
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.36 E-value=1.2e+02 Score=30.62 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 156 AVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 156 a~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
...+.+|.++..||+||++=|.+....-..|+.+|..+
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888888888888888888887765
No 92
>PF14282 FlxA: FlxA-like protein
Probab=33.65 E-value=2.2e+02 Score=25.93 Aligned_cols=49 Identities=10% Similarity=0.269 Sum_probs=36.0
Q ss_pred hhhHhHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007546 149 KKAKNEYAVVQAELERVNA-EN---QRLKDMVNEVTNNYNALQLQLMAFMQHH 197 (599)
Q Consensus 149 kr~K~Ela~Lq~EL~Rv~e-EN---kRLk~ML~qv~~nYnaLQmql~~lmQqq 197 (599)
++.+.++..|+++|..|.+ +. +.-+.....|-.--..|+.||..+..++
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778999999999998 44 5556667777777788888888764443
No 93
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=33.52 E-value=76 Score=33.40 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 007546 165 VNAENQRLKDMV 176 (599)
Q Consensus 165 v~eENkRLk~ML 176 (599)
+++||+|||++|
T Consensus 96 l~~EN~rLr~LL 107 (283)
T TIGR00219 96 LKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHh
Confidence 455555555444
No 94
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=33.45 E-value=45 Score=31.56 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML 176 (599)
+..|..||..+++||++|++=|
T Consensus 98 i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 98 IFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHh
Confidence 5567899999999999999744
No 95
>PRK14127 cell division protein GpsB; Provisional
Probab=33.16 E-value=77 Score=29.48 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQ 187 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQ 187 (599)
-.+++.|..|+.++++||.+|+.=|.++...-...+
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 346777888888888888888888887776544443
No 96
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=32.96 E-value=1.7e+02 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 157 VVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 157 ~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.+++||.+|++.|.-+..-|..-...-..|+.++-.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999988888998887664
No 97
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.45 E-value=94 Score=35.55 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
++|+.|+.||+.|....+.|...|+.+...-..|+.|+.
T Consensus 83 KqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 83 KQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777888888888888888888863
No 98
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.53 E-value=2.9e+02 Score=27.79 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=35.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+.....++++++.+++--++..+|+.+..+.+..|+.++.++
T Consensus 124 ~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l 165 (176)
T PF12999_consen 124 KEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEEL 165 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666888888889999999999999999999999998886
No 99
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=31.42 E-value=1.4e+02 Score=30.48 Aligned_cols=27 Identities=7% Similarity=0.289 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
.-++.|++|++||+..-+++|+-++.-
T Consensus 82 ~~~~~l~~~~~~~kqdi~t~~e~i~~e 108 (209)
T COG5124 82 DSSELLKKKIQEVKQDIATYKEEIDKE 108 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 347789999999999999999988754
No 100
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=31.30 E-value=54 Score=33.35 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML 176 (599)
.|+..|++...|+.+||+.||++.
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999865
No 101
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.25 E-value=1.3e+02 Score=36.25 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHhh
Q 007546 155 YAVVQAELERVNAENQRLKD---MVNEVTNNYNALQLQLMAFMQHH 197 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~---ML~qv~~nYnaLQmql~~lmQqq 197 (599)
-.+|-+||-.|-.||.+||+ |+..|..-|.+||.++..++|--
T Consensus 882 Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~Lqmy 927 (961)
T KOG4673|consen 882 RSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMY 927 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888889999986 67778899999999999998874
No 102
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=30.85 E-value=1.6e+02 Score=30.66 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
.|++.+++++...+.+=+.|..+++++.+.+..++..+-++|..
T Consensus 244 ~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~ 287 (306)
T PF04888_consen 244 KEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKS 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777766666655543
No 103
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=30.61 E-value=77 Score=26.06 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
-..+..+|.++..||+.||.-|+..
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999988754
No 104
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=30.23 E-value=76 Score=27.67 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
.|+..++.|..++++||++|+-=+..+
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888888777444433
No 105
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.16 E-value=48 Score=26.83 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=16.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLK 173 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk 173 (599)
+.+.++..++.|++++.+|+++||
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334567777777887777777765
No 106
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.93 E-value=1.9e+02 Score=28.86 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
+.++..|+.|+.+++++-..|+.-|+..
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777666666544
No 107
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.82 E-value=1.7e+02 Score=26.01 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHH 197 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq 197 (599)
.|..|-..++.|++||.+|+. .=..||..+-.||...
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~-------EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLES-------ENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 366677777888999998873 3456777777777653
No 108
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.80 E-value=1e+02 Score=27.27 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 007546 163 ERVNAENQRLKDMVNE 178 (599)
Q Consensus 163 ~Rv~eENkRLk~ML~q 178 (599)
.++.+||.|||+-|..
T Consensus 3 ~ei~eEn~~Lk~eiqk 18 (76)
T PF07334_consen 3 HEIQEENARLKEEIQK 18 (76)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556665554443
No 109
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.22 E-value=1.5e+02 Score=24.66 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNY 183 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nY 183 (599)
+..+..++.|++.++++.++|.+-+..|..=|
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666665555555
No 110
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.57 E-value=1.8e+02 Score=29.69 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
+.|--.|.+||+.+.+||.+|..=.+.+-+.|..|.+.=..
T Consensus 94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~ 134 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKAT 134 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHH
Confidence 34566788999999999999998888888888888665444
No 111
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=28.16 E-value=1.3e+02 Score=28.84 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 160 AELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 160 ~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
.|+++.| -||-.||++|.+.|+.-..|+-.++..
T Consensus 73 ~e~q~kK---~KLl~mL~eVd~RY~qY~~Qmq~Vvss 106 (140)
T PF07526_consen 73 QELQRKK---AKLLSMLDEVDRRYRQYYDQMQAVVSS 106 (140)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 489999999999999887776665544
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=27.55 E-value=3.4e+02 Score=32.54 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHhhh
Q 007546 152 KNEYAVVQAELERVNAENQRLKDM--------------VNEVTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~M--------------L~qv~~nYnaLQmql~~lmQqq~ 198 (599)
..|++.|++||..++..=+.||.. |.++-.++-.||.++..|+++.+
T Consensus 424 E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq 484 (697)
T PF09726_consen 424 EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ 484 (697)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777666555555555 77888889999999999987655
No 113
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=27.54 E-value=1.7e+02 Score=31.86 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
++....|...+++||+||+.-|..-.+..-+|=.||...
T Consensus 256 ~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lses 294 (310)
T PF09755_consen 256 MAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667779999999999999999999999998888663
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.41 E-value=2.5e+02 Score=26.95 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML 176 (599)
.|+..|++||..++.|++.|+.=|
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554333
No 115
>PRK14143 heat shock protein GrpE; Provisional
Probab=27.22 E-value=2.7e+02 Score=29.05 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
.++..|++||..+++|.+.|+..|-++.-+|-.++.+...
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888877777777777777644
No 116
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.20 E-value=2.1e+02 Score=29.21 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=32.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007546 149 KKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQ 187 (599)
Q Consensus 149 kr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQ 187 (599)
++-..|...|+..++-+-+.|.||..=+..+++.|.+||
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888888888888888888887
No 117
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=26.12 E-value=1.3e+02 Score=27.54 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
++|.+.|+--|-++-+||++|+.=|.
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~ 39 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELN 39 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777775443
No 118
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.10 E-value=1.6e+02 Score=33.84 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFM 194 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lm 194 (599)
.++..++.||.++..||++|+.=.+++.+.=.++-.|+-..+
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 578889999999999999999999888885555554444444
No 119
>smart00340 HALZ homeobox associated leucin zipper.
Probab=25.63 E-value=1.5e+02 Score=23.76 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007546 157 VVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 157 ~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
-|+.=-+.+.+||+||+.=|.++
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777888888887655544
No 120
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=25.14 E-value=2.1e+02 Score=30.40 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=34.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHH
Q 007546 149 KKAKNEYAVVQAELERVNAENQRLK---DMVNEVTNNYNALQLQLMAFMQ 195 (599)
Q Consensus 149 kr~K~Ela~Lq~EL~Rv~eENkRLk---~ML~qv~~nYnaLQmql~~lmQ 195 (599)
.|+|..++.+.-||..+-|||++|+ +.|..++++.-+=+..|...|-
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3455668889999999999999997 4566666666666666666665
No 121
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.96 E-value=1e+02 Score=35.98 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVT 180 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~ 180 (599)
.|+.|+.|++++-+|+++|+.|-+.+-
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888899888888888888876543
No 122
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.59 E-value=2.8e+02 Score=27.39 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
|...++.||.+|+.|=...=.=.+.+...|...+.+|++
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333444444444433
No 123
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.42 E-value=1.8e+02 Score=28.97 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq~ 198 (599)
...++.++.++++|++.|+.-+..+...+-.++.++...++...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999887766543
No 124
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=24.40 E-value=1.9e+02 Score=30.13 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=30.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 151 AKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 151 ~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
.+.|...|+.+++++..+.++||.-|+...+=++.|..-|..
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~Fs~ 57 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIFSE 57 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 345778899999999999999998776655555555444433
No 125
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.03 E-value=1.9e+02 Score=33.03 Aligned_cols=36 Identities=25% Similarity=0.158 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL 190 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql 190 (599)
|..+.+|=.-++|||.||.+.|-+-.+.--+|=.||
T Consensus 280 ~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~l 315 (552)
T KOG2129|consen 280 LMQYRAEEVDHREENERLQRKLINELERREALCRML 315 (552)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555566666666666555555544444444
No 126
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.95 E-value=1.1e+02 Score=27.16 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
.++..|+.....+.+||..|+.++.
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688888999999999999998875
No 127
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.95 E-value=2.6e+02 Score=25.25 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQ 195 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQ 195 (599)
+..|+..++.+.++=++|..-+..+.+.+..||.+|-.+++
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888888888899999999999999999999888765
No 128
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.73 E-value=2.2e+02 Score=33.07 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq~ 198 (599)
++.+..+++|++++++|-+.++.-|.++.+.|..++..+.+.+....
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 260 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIEL 260 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999888886666665543
No 129
>PRK14162 heat shock protein GrpE; Provisional
Probab=23.33 E-value=2.5e+02 Score=28.55 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=33.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
....|+..|+.+|..+.+|...|+.-|-++.-+|..++.+...-
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE 79 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKE 79 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888888888888888888888877776543
No 130
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.17 E-value=2.5e+02 Score=32.20 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.+..++.||...+|||+.|+.=+...-..|..|+-++-+.
T Consensus 390 k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3666777777778888877766666666665555555444
No 131
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.85 E-value=3.2e+02 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=26.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQ 187 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQ 187 (599)
..+..+..++.||.++.+....+...|..+.+.|..++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33455677777777777777777777777777777776
No 132
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.83 E-value=1.9e+02 Score=30.03 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 158 VQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 158 Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
+++|+..+++|=++|++=|..-.+++..+|.+...
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~a 183 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDA 183 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 133
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=22.62 E-value=1.1e+02 Score=28.93 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML 176 (599)
|..|..|.+|=-.++-||++||+.|
T Consensus 28 K~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 28 KQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHhhHHHHhhHHHHHHHh
No 134
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.53 E-value=2.6e+02 Score=25.31 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNY 183 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nY 183 (599)
..+..|+.|+..+..||.+|+.=|+...+.=
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999998777665543
No 135
>PHA00327 minor capsid protein
Probab=22.44 E-value=74 Score=31.91 Aligned_cols=52 Identities=27% Similarity=0.243 Sum_probs=23.1
Q ss_pred cccccccCC-CCCCccccCCCCcchhhhhh---HhHHHHHHHHHHHHHHHHHHHHH
Q 007546 123 GLNLLTTNT-SSDHSTVDDGISTNMEDKKA---KNEYAVVQAELERVNAENQRLKD 174 (599)
Q Consensus 123 GLnLLT~nt-gSDqS~vDDg~Ss~~edkr~---K~Ela~Lq~EL~Rv~eENkRLk~ 174 (599)
|||-|.+-+ |+.-+--..|.|.+..-+.. --+...|--|.+||..|=++|++
T Consensus 74 GLNpLla~g~GgASsPsGAg~Sp~Np~eSglnSa~~v~~l~~~~~r~~aelQnL~~ 129 (187)
T PHA00327 74 GLNPLLAFGKGGASSPSGAGWSPNNPVESGLNSALAVQRLTYERKRMQAELQNLRE 129 (187)
T ss_pred CccHHHHhcCCCCCCCCCCCCCCCCcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888765544 54433233344432111111 12344455555555555555553
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.43 E-value=2.4e+02 Score=29.38 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
+..|+..|+.++.|..+||+.+++..-.-..|+.+--+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999998866555555444333
No 137
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.42 E-value=2.4e+02 Score=29.50 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=43.5
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007546 146 MEDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHH 197 (599)
Q Consensus 146 ~edkr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq 197 (599)
.+..|-+.....|++||++...+...||.=++.+-.|--.|.-+. .+||--
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi-RylqSY 136 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI-RYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhC
Confidence 356777788899999999999999999999999999999998885 445653
No 138
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.39 E-value=2.7e+02 Score=29.90 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQ 189 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmq 189 (599)
|-..|.+||+++..|..+|..-|..+.+.-..|+..
T Consensus 58 Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 58 EEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544444444433
No 139
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=21.89 E-value=73 Score=20.88 Aligned_cols=11 Identities=55% Similarity=0.794 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q 007546 159 QAELERVNAEN 169 (599)
Q Consensus 159 q~EL~Rv~eEN 169 (599)
.+||+|+++|-
T Consensus 2 ~aeLerLkner 12 (17)
T PF12107_consen 2 EAELERLKNER 12 (17)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHhc
Confidence 46888888774
No 140
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.85 E-value=1.6e+02 Score=34.86 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYN 184 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYn 184 (599)
+.|...|+.||++++.|+.+|+.=|+++-..+.
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888877765543
No 141
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.76 E-value=2.7e+02 Score=26.24 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHh
Q 007546 154 EYAVVQAELERVNAENQRLK---DMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk---~ML~qv~~nYnaLQmql~~lmQq 196 (599)
+-..|.+||=++-+||..++ .-+..+...|..|+.++-.+++-
T Consensus 45 ~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 45 ERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777775554 44556667777777777666654
No 142
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.70 E-value=4.4e+02 Score=28.80 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
...++.|+.|.+.++.|...+|..-..+...-.+|+-.-+.
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~ 66 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVR 66 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455454444444444444444444444444433333
No 143
>smart00574 POX domain associated with HOX domains.
Probab=21.37 E-value=2.2e+02 Score=27.78 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 169 NQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 169 NkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
-.||-.||++|.+.|+.-..|+-.++..
T Consensus 79 k~kLl~mL~eVd~RY~qY~~qmq~v~ss 106 (140)
T smart00574 79 KAKLLSMLEEVDRRYKHYYEQMQTVVSS 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999877666555443
No 144
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=21.28 E-value=2.2e+02 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML 176 (599)
++..-..|--|+++||+||+.+-
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777777777777665
No 145
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=21.25 E-value=4e+02 Score=23.83 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=35.5
Q ss_pred hhhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHH
Q 007546 148 DKKAK-NEYAVVQAELERVNAENQRLKDMVNEVTN---------NYNALQLQLMAFM 194 (599)
Q Consensus 148 dkr~K-~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~---------nYnaLQmql~~lm 194 (599)
+++.+ ++++.|.-||..|..|=.-||..|.-++. .|.-|.++=..+|
T Consensus 13 ~~e~~~k~lE~L~~eL~~it~ERnELr~~L~~~~~~~~n~R~n~~ye~Lk~q~~~vM 69 (84)
T PF04822_consen 13 KKEKKMKELERLKFELQKITKERNELRDILALYTEGSLNNRPNPEYEMLKSQHEEVM 69 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCChHHHHHHHHHHHHH
Confidence 45666 78999999999999999999999986654 4555655444443
No 146
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=20.72 E-value=5.1e+02 Score=24.48 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq~ 198 (599)
|..+..+|.++..-+-....-|.++...+..|+.+++.+|.+..
T Consensus 53 l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 53 LKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666555556666788888899999999999887754
No 147
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.68 E-value=2.7e+02 Score=32.53 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=24.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 147 EDKKAKNEYAVVQAELERVNAENQRLKDMVNEVTN 181 (599)
Q Consensus 147 edkr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~ 181 (599)
+..-.|.....|.+|+.|++.||-||+.=|..+-+
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444555667788888888888888777776654
No 148
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.41 E-value=4.5e+02 Score=24.68 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 156 AVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 156 a~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
+.|..++.++..|+.+|+..+.++.+....++..+.
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 149
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=20.18 E-value=95 Score=37.79 Aligned_cols=36 Identities=31% Similarity=0.618 Sum_probs=29.0
Q ss_pred ccCCCCCccccceeeecCCCcEEEEEecccCCCCCChh
Q 007546 353 CTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPA 390 (599)
Q Consensus 353 Ct~a~gCpvkKqVQr~~~D~si~~tTY~G~HnH~~p~~ 390 (599)
|+- .||+|+=.|.+..+ ..-.++-+..+|||++-+.
T Consensus 156 ~tR-tGC~A~m~Vk~~~~-gkW~V~~fv~eHNH~L~p~ 191 (846)
T PLN03097 156 CAK-TDCKASMHVKRRPD-GKWVIHSFVKEHNHELLPA 191 (846)
T ss_pred ccC-CCCceEEEEEEcCC-CeEEEEEEecCCCCCCCCc
Confidence 554 59999999988544 4578899999999998654
Done!