Query 007546
Match_columns 599
No_of_seqs 235 out of 781
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.4E-33 4.7E-38 237.1 5.3 75 314-389 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3.1E-33 1.1E-37 236.0 3.7 75 314-389 4-78 (78)
3 2zxx_A Geminin; coiled-coil, c 92.1 0.13 4.4E-06 43.8 4.0 28 153-180 41-68 (79)
4 1wlq_A Geminin; coiled-coil; 2 86.8 0.7 2.4E-05 39.7 4.6 27 153-179 45-71 (83)
5 1uii_A Geminin; human, DNA rep 86.3 0.94 3.2E-05 38.9 5.1 26 154-179 54-79 (83)
6 1t2k_D Cyclic-AMP-dependent tr 85.3 2.1 7.2E-05 33.8 6.5 42 150-191 19-60 (61)
7 2wt7_A Proto-oncogene protein 84.7 3 0.0001 33.3 7.1 42 150-191 20-61 (63)
8 1ci6_A Transcription factor AT 82.3 3.4 0.00012 33.1 6.5 42 151-192 21-62 (63)
9 2wvr_A Geminin; DNA replicatio 81.0 1.7 5.8E-05 42.7 5.1 27 153-179 122-148 (209)
10 1jnm_A Proto-oncogene C-JUN; B 80.5 1.9 6.6E-05 34.2 4.5 42 150-191 19-60 (62)
11 2j5u_A MREC protein; bacterial 75.8 1.9 6.6E-05 42.9 3.9 23 155-177 38-60 (255)
12 1hjb_A Ccaat/enhancer binding 75.6 6 0.0002 34.0 6.4 38 155-192 38-75 (87)
13 1t6f_A Geminin; coiled-coil, c 74.9 2.9 9.9E-05 30.9 3.6 24 152-175 13-36 (37)
14 4dzo_A Mitotic spindle assembl 72.4 5.2 0.00018 36.2 5.5 38 153-190 4-41 (123)
15 3hnw_A Uncharacterized protein 71.1 11 0.00036 34.7 7.3 41 153-193 89-129 (138)
16 3m91_A Proteasome-associated A 69.9 15 0.00052 28.8 6.8 41 153-193 9-49 (51)
17 3oja_A Leucine-rich immune mol 69.6 11 0.00037 39.5 8.0 44 153-196 435-478 (487)
18 1dh3_A Transcription factor CR 67.8 6.7 0.00023 30.8 4.5 34 150-183 19-52 (55)
19 2wt7_B Transcription factor MA 67.8 5.1 0.00017 34.8 4.2 35 153-187 55-89 (90)
20 3s9g_A Protein hexim1; cyclin 66.8 4.4 0.00015 35.9 3.6 20 154-173 66-85 (104)
21 1ci6_A Transcription factor AT 66.5 6.5 0.00022 31.5 4.3 28 152-179 36-63 (63)
22 1gu4_A CAAT/enhancer binding p 64.7 7.9 0.00027 32.6 4.6 37 155-191 38-74 (78)
23 2dgc_A Protein (GCN4); basic d 63.8 11 0.00037 30.3 5.1 31 153-183 30-60 (63)
24 2w6b_A RHO guanine nucleotide 63.6 34 0.0011 27.4 7.7 45 149-193 6-50 (56)
25 2oc5_A Hypothetical protein; D 61.0 9 0.00031 37.9 5.0 49 147-195 165-214 (244)
26 3a7p_A Autophagy protein 16; c 58.3 31 0.0011 32.5 7.9 42 152-193 67-115 (152)
27 2oa5_A Hypothetical protein BQ 57.2 7.6 0.00026 34.9 3.4 23 155-177 10-32 (110)
28 1hjb_A Ccaat/enhancer binding 57.0 9 0.00031 32.9 3.7 29 153-181 50-78 (87)
29 2rpr_A Flywch-type zinc finger 55.7 5.5 0.00019 33.1 2.2 52 325-389 22-75 (87)
30 3l4f_A RHO guanine nucleotide 55.3 38 0.0013 27.6 6.8 44 155-198 9-52 (61)
31 1wrd_A TOM1, target of MYB pro 55.1 29 0.00098 30.2 6.7 42 154-195 7-64 (103)
32 1t2k_D Cyclic-AMP-dependent tr 54.7 13 0.00046 29.2 4.2 25 152-176 35-59 (61)
33 2c9l_Y EB1, zebra, BZLF1 trans 52.1 17 0.00058 29.2 4.3 27 155-181 24-50 (63)
34 4etp_A Kinesin-like protein KA 48.4 26 0.0009 36.9 6.4 38 155-192 5-42 (403)
35 2yy0_A C-MYC-binding protein; 46.7 29 0.001 27.1 4.9 22 153-174 26-47 (53)
36 3mud_A DNA repair protein XRCC 46.4 21 0.00072 34.3 4.8 33 152-184 141-173 (175)
37 4h22_A Leucine-rich repeat fli 46.0 45 0.0016 29.6 6.5 33 155-187 46-78 (103)
38 3m9b_A Proteasome-associated A 45.4 21 0.00073 36.0 4.9 40 154-193 55-94 (251)
39 1gd2_E Transcription factor PA 45.1 24 0.0008 29.2 4.3 28 155-182 38-65 (70)
40 2jee_A YIIU; FTSZ, septum, coi 44.7 86 0.0029 26.7 7.8 41 153-193 20-60 (81)
41 1gu4_A CAAT/enhancer binding p 44.5 11 0.00037 31.8 2.2 26 154-179 51-76 (78)
42 1lwu_C Fibrinogen gamma chain; 43.8 54 0.0018 34.0 7.8 45 152-196 11-55 (323)
43 2yy0_A C-MYC-binding protein; 42.4 43 0.0015 26.1 5.2 28 154-181 20-47 (53)
44 3q8t_A Beclin-1; autophagy, AT 41.9 99 0.0034 26.6 7.9 39 158-196 37-75 (96)
45 1zxa_A CGMP-dependent protein 40.8 32 0.0011 28.4 4.4 28 154-181 26-53 (67)
46 2wt7_A Proto-oncogene protein 38.8 45 0.0015 26.4 4.9 26 152-177 36-61 (63)
47 1wt6_A Myotonin-protein kinase 38.4 75 0.0026 27.2 6.4 38 156-193 27-64 (81)
48 2z5i_A TM, general control pro 38.2 30 0.001 26.9 3.7 32 153-184 19-50 (52)
49 2wuj_A Septum site-determining 37.8 26 0.00088 27.5 3.3 26 155-180 29-54 (57)
50 1oxz_A ADP-ribosylation factor 37.6 94 0.0032 29.9 7.9 44 153-196 69-129 (186)
51 3n7n_E Monopolin complex subun 37.1 7.1 0.00024 34.2 0.0 24 152-175 49-72 (95)
52 1naf_A ADP-ribosylation factor 37.0 87 0.003 29.4 7.4 45 152-196 52-113 (158)
53 3bas_A Myosin heavy chain, str 37.0 1.1E+02 0.0037 25.8 7.3 41 153-193 21-61 (89)
54 2oqq_A Transcription factor HY 36.9 43 0.0015 25.5 4.2 22 155-176 19-40 (42)
55 3iv1_A Tumor susceptibility ge 36.8 1.5E+02 0.005 25.2 7.9 49 145-193 7-65 (78)
56 3mtu_E Head morphogenesis prot 36.1 52 0.0018 27.9 5.0 32 153-184 44-75 (77)
57 3a7o_A Autophagy protein 16; c 35.6 1.3E+02 0.0045 25.2 7.3 40 154-193 19-58 (75)
58 3a5t_A Transcription factor MA 35.3 0.48 1.6E-05 42.3 -7.8 35 158-192 70-104 (107)
59 1o3x_A ADP-ribosylation factor 35.3 1.1E+02 0.0037 28.1 7.6 27 152-178 43-69 (140)
60 3u06_A Protein claret segregat 35.1 73 0.0025 33.8 7.3 9 535-543 364-372 (412)
61 2efr_A General control protein 34.9 98 0.0034 29.1 7.3 41 153-193 105-145 (155)
62 3m9b_A Proteasome-associated A 34.4 32 0.0011 34.8 4.2 32 162-193 56-87 (251)
63 4etp_A Kinesin-like protein KA 33.6 83 0.0029 33.1 7.4 36 154-189 18-53 (403)
64 2xdj_A Uncharacterized protein 33.2 1.3E+02 0.0043 25.5 7.0 39 155-193 22-60 (83)
65 3v86_A De novo design helix; c 32.2 42 0.0014 22.9 3.1 23 151-173 5-27 (27)
66 2wg5_A General control protein 31.8 41 0.0014 29.4 4.0 21 155-175 9-29 (109)
67 1uii_A Geminin; human, DNA rep 31.6 90 0.0031 26.8 5.8 27 154-180 47-73 (83)
68 1jnm_A Proto-oncogene C-JUN; B 31.6 21 0.00071 28.2 1.9 25 153-177 36-60 (62)
69 3oja_B Anopheles plasmodium-re 30.5 1.1E+02 0.0039 32.4 7.9 37 155-191 511-547 (597)
70 1nkp_B MAX protein, MYC proto- 30.3 43 0.0015 27.5 3.7 6 120-125 17-22 (83)
71 3q4f_C DNA repair protein XRCC 30.1 38 0.0013 32.9 3.7 22 153-174 161-182 (186)
72 1wmi_B RELB, hypothetical prot 29.6 29 0.00099 28.4 2.4 20 158-177 9-28 (67)
73 1am9_A Srebp-1A, protein (ster 27.9 58 0.002 27.0 4.1 25 154-178 51-75 (82)
74 3hnw_A Uncharacterized protein 27.8 1.9E+02 0.0066 26.3 7.9 40 154-193 83-122 (138)
75 2xdj_A Uncharacterized protein 27.8 1.3E+02 0.0044 25.4 6.2 41 153-193 27-67 (83)
76 2oxj_A Hybrid alpha/beta pepti 27.7 82 0.0028 23.0 4.2 23 155-177 10-32 (34)
77 3u06_A Protein claret segregat 27.6 1E+02 0.0034 32.7 6.8 29 154-182 11-39 (412)
78 3sja_C Golgi to ER traffic pro 27.1 1.3E+02 0.0044 24.7 5.8 38 154-191 7-56 (65)
79 3sjb_C Golgi to ER traffic pro 27.0 1.3E+02 0.0045 26.3 6.2 40 153-192 23-74 (93)
80 1go4_E MAD1 (mitotic arrest de 25.9 75 0.0026 28.0 4.5 24 154-177 13-36 (100)
81 3o0z_A RHO-associated protein 25.9 1.8E+02 0.0061 27.8 7.5 33 155-187 99-138 (168)
82 3bas_A Myosin heavy chain, str 25.7 1.5E+02 0.0053 24.9 6.4 39 158-196 12-50 (89)
83 2zqm_A Prefoldin beta subunit 24.7 1.5E+02 0.0051 25.0 6.2 42 155-196 72-113 (117)
84 3s9g_A Protein hexim1; cyclin 24.2 1.6E+02 0.0055 26.1 6.3 39 155-193 39-77 (104)
85 3iox_A AGI/II, PA; alpha helix 24.0 1.5E+02 0.0053 32.5 7.5 22 155-176 11-32 (497)
86 2wvr_A Geminin; DNA replicatio 23.0 1.9E+02 0.0065 28.5 7.2 34 154-187 116-149 (209)
87 3trt_A Vimentin; cytoskeleton, 22.6 3E+02 0.01 22.0 7.4 38 155-192 37-74 (77)
88 4h22_A Leucine-rich repeat fli 22.0 2.9E+02 0.0098 24.6 7.5 41 153-193 37-77 (103)
89 3w03_C DNA repair protein XRCC 21.8 97 0.0033 29.9 4.9 24 154-177 153-176 (184)
90 2dfs_A Myosin-5A; myosin-V, in 21.5 1.7E+02 0.0059 34.7 7.9 16 168-183 992-1007(1080)
91 1p9i_A Cortexillin I/GCN4 hybr 21.4 85 0.0029 22.0 3.1 23 158-180 4-26 (31)
92 1ez3_A Syntaxin-1A; three heli 21.3 2.4E+02 0.0084 24.0 7.0 44 155-198 63-112 (127)
93 3f6n_A Virion-associated prote 21.3 1.3E+02 0.0044 27.6 5.2 31 155-185 4-34 (129)
94 2wg5_A General control protein 20.8 69 0.0024 27.9 3.4 21 153-173 14-34 (109)
95 1nlw_A MAD protein, MAX dimeri 20.8 95 0.0033 25.8 4.0 17 158-174 59-75 (80)
96 2fxo_A Myosin heavy chain, car 20.7 2.3E+02 0.0077 25.2 6.8 40 153-192 20-59 (129)
97 2b5u_A Colicin E3; high resolu 20.5 1.8E+02 0.0062 32.2 7.1 37 154-190 322-358 (551)
98 2zxx_A Geminin; coiled-coil, c 20.2 65 0.0022 27.4 2.9 30 159-188 26-55 (79)
99 1gd2_E Transcription factor PA 20.2 2E+02 0.0067 23.7 5.7 34 153-193 29-62 (70)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.98 E-value=1.4e-33 Score=237.13 Aligned_cols=75 Identities=53% Similarity=1.128 Sum_probs=72.0
Q ss_pred eeEEEEecCCCCCCCCchhHhHhccccccCCCCCCCcccccCCCCCccccceeeecCCCcEEEEEecccCCCCCCh
Q 007546 314 ARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 389 (599)
Q Consensus 314 ~rVsv~t~s~~~~~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a~gCpvkKqVQr~~~D~si~~tTY~G~HnH~~p~ 389 (599)
.||+|++.++..+++|||+|||||||.|||+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 389999999999999999999999999999999999999998 699999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=3.1e-33 Score=235.98 Aligned_cols=75 Identities=55% Similarity=1.070 Sum_probs=68.8
Q ss_pred eeEEEEecCCCCCCCCchhHhHhccccccCCCCCCCcccccCCCCCccccceeeecCCCcEEEEEecccCCCCCCh
Q 007546 314 ARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 389 (599)
Q Consensus 314 ~rVsv~t~s~~~~~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a~gCpvkKqVQr~~~D~si~~tTY~G~HnH~~p~ 389 (599)
.||+|++.++..+++|||+|||||||.|||+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478899999999999999999999999999999999999999 799999999999999999999999999999873
No 3
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=92.05 E-value=0.13 Score=43.81 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVT 180 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~ 180 (599)
.++..+++||.++++||+.|++|++++.
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999874
No 4
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=86.83 E-value=0.7 Score=39.69 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
.++..+++|+.++++||++|+++-+++
T Consensus 45 ~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 45 KEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888887765
No 5
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=86.27 E-value=0.94 Score=38.89 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
++..|++|+..+++||++||.+.+++
T Consensus 54 ~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 54 EIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665554
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.33 E-value=2.1 Score=33.84 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=36.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
+.|..+..|+.+.+.+..||..|+.-+..+.+....|...|+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445668899999999999999999999999999999987775
No 7
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.69 E-value=3 Score=33.29 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=35.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
+.+..+..|+.|...+..||..|+.-+..+...+..|...|.
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668899999999999999999999988888888876654
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.30 E-value=3.4 Score=33.14 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=35.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 151 AKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 151 ~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
.+.+...|+.|...+..||..|+.-++.+...+..|..-|.+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346788899999999999999999999999988888765544
No 9
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=80.96 E-value=1.7 Score=42.71 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
.++..|++|+.++++||++||.+.+++
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888776
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.50 E-value=1.9 Score=34.23 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=33.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
+.+..+..|+.+.+.+..||..|+.-+..+......|...|+
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668899999999999999999999999888888876664
No 11
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=75.82 E-value=1.9 Score=42.85 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
|.....+++++++||+|||.+|+
T Consensus 38 l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 38 LAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455666677778888887765
No 12
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.64 E-value=6 Score=34.01 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
...++.+...+.+||.+|+.-+.++......|+.-|+.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999998888876654
No 13
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=74.92 E-value=2.9 Score=30.86 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDM 175 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~M 175 (599)
-.++..-++|+.++++||+.|+++
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhh
Confidence 357888999999999999999864
No 14
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=72.45 E-value=5.2 Score=36.16 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL 190 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql 190 (599)
.|++.||+||+.....|+|||++-.+-...|+.-=--|
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999988887777654333
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.06 E-value=11 Score=34.69 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.|+..|+.||-...++++.++.-++++.+.+++||.++..+
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777777777777777777777777765
No 16
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.86 E-value=15 Score=28.76 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
..+..|+.++..+.+-|.||..+|.+-...-..|+-++-.+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778999999999999999999999988888888887654
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.65 E-value=11 Score=39.53 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
.+.+..++|.++++|||.||+..++++...-..-...+.++.++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 34566777778888888888888888776666666566666554
No 18
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=67.84 E-value=6.7 Score=30.79 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=28.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007546 150 KAKNEYAVVQAELERVNAENQRLKDMVNEVTNNY 183 (599)
Q Consensus 150 r~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nY 183 (599)
+.+.-+..|+.++..+.+||..|+.-|+.+...|
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455688999999999999999999988887655
No 19
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=67.80 E-value=5.1 Score=34.77 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQ 187 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQ 187 (599)
.|...|+.|++++++||.+++.=++.+-..|.+|+
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667899999999999999999999999998885
No 20
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=66.77 E-value=4.4 Score=35.92 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLK 173 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk 173 (599)
.+..|++||+|++.||++|+
T Consensus 66 ~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777765
No 21
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.55 E-value=6.5 Score=31.51 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
+.+-..|+.++.++..|++-||.||.+|
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4567889999999999999999999764
No 22
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=64.71 E-value=7.9 Score=32.62 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
...++.+...+..||.+|+.-+.++......|+.-|+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999998888887775554
No 23
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=63.75 E-value=11 Score=30.32 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNY 183 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nY 183 (599)
..+..|+.+++.+..||..|+.-++++..-|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999998877766544
No 24
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=63.64 E-value=34 Score=27.41 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=32.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 149 KKAKNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 149 kr~K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
|..-+-.=+|+.|+.+++.||++|+..|++=.+.-..|-.-+-.+
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344567899999999999999999988776666665444333
No 25
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=61.04 E-value=9 Score=37.89 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=41.3
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Q 007546 147 EDKKAKNEYAVVQAELERVNAENQRL-KDMVNEVTNNYNALQLQLMAFMQ 195 (599)
Q Consensus 147 edkr~K~Ela~Lq~EL~Rv~eENkRL-k~ML~qv~~nYnaLQmql~~lmQ 195 (599)
...|-|.-++..++||++++.||--| +.||+||..+-..|+|-=.++|.
T Consensus 165 Ge~WLk~~f~~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~Mekealve 214 (244)
T 2oc5_A 165 GEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIE 214 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34677777999999999999999876 78999999999999987655543
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.34 E-value=31 Score=32.52 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLK-------DMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk-------~ML~qv~~nYnaLQmql~~l 193 (599)
..++..|+.|+..+..+.+.|. ..++.|...|-+||.||..+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888887777777 67888899999999998664
No 27
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=57.22 E-value=7.6 Score=34.88 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
++.|.+||.|++-||+.||.-|.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999996554
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=57.03 E-value=9 Score=32.92 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTN 181 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~ 181 (599)
.|-..|++|+..++.|...||.||.++-.
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 35567888888888888888888876543
No 29
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=55.66 E-value=5.5 Score=33.07 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=33.1
Q ss_pred CCCCCchhHhHhccccccCCCCCCCcccccCC--CCCccccceeeecCCCcEEEEEecccCCCCCCh
Q 007546 325 PMINDGCQWRKYGQKMAKGNPCPRAYYRCTMA--AGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP 389 (599)
Q Consensus 325 ~~~~DGy~WRKYGQK~iKgnp~PRsYYrCt~a--~gCpvkKqVQr~~~D~si~~tTY~G~HnH~~p~ 389 (599)
.++-|||...+--+ . ..+.|.+|+.. .+|+|+-.... ++ + ...+.|||+...
T Consensus 22 ~Lv~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~~ 75 (87)
T 2rpr_A 22 FLVHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPDL 75 (87)
T ss_dssp EEEETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCCH
T ss_pred EEEECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCch
Confidence 35679997765321 1 23689999973 48999855442 21 2 346889997443
No 30
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=55.33 E-value=38 Score=27.61 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQqq~ 198 (599)
.=+|+-|+.++++||++++..|++.-+-=..|..-+-.++.+.+
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34688999999999999999999998888888877777766654
No 31
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=55.13 E-value=29 Score=30.19 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVN----------------EVTNNYNALQLQLMAFMQ 195 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~----------------qv~~nYnaLQmql~~lmQ 195 (599)
+++.+..||++|+.-=+-|.+||+ ++.+.+..+|-+++.+++
T Consensus 7 q~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~ 64 (103)
T 1wrd_A 7 QIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIP 64 (103)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999988888999998 445566777777777765
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.66 E-value=13 Score=29.17 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML 176 (599)
+.+...|+.|+..+.+|+..|+.+|
T Consensus 35 ~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 35 SSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567789999999999999999887
No 33
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=52.14 E-value=17 Score=29.16 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTN 181 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~ 181 (599)
|.-.++--.-..+||.|||-++.|||-
T Consensus 24 lqh~r~vaaaks~en~rlr~l~kqmcp 50 (63)
T 2c9l_Y 24 LQHYREVAAAKSSENDRLRLLLKQMCP 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhcccchHHHHHHHHhCC
Confidence 333333334456899999999988874
No 34
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.41 E-value=26 Score=36.94 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
++.|++||+++++|.+.|..-+.++...+..|+.+|..
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444443
No 35
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.73 E-value=29 Score=27.12 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKD 174 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ 174 (599)
.|++.||+++.++.++++.|+.
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444
No 36
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=46.45 E-value=21 Score=34.32 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYN 184 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYn 184 (599)
+.++..|++||.+.+++|+.+.++|++....-+
T Consensus 141 qkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL~ 173 (175)
T 3mud_A 141 EKSIDDLEEKVAHAKEENLNMHQMLDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356788999999999999999999998876544
No 37
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.03 E-value=45 Score=29.62 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQ 187 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQ 187 (599)
++.++-|+++...|-++||.+.+.+...+..||
T Consensus 46 ~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 46 LAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333
No 38
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.41 E-value=21 Score=36.00 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.+..|+.++..+.+.|++|+..|.+..+....|+.++-.|
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677999999999999999999999999999999998775
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.15 E-value=24 Score=29.19 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNN 182 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~n 182 (599)
+..|+.+...+..||+.||..+..+...
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666666666655443
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.70 E-value=86 Score=26.73 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+.+..||.|+++++++|..|..=..++...--.|......+
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44677999999999999997776666555555555544443
No 41
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.49 E-value=11 Score=31.80 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEV 179 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv 179 (599)
|-..|+.|+..+..|...||.||.++
T Consensus 51 eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45567777777777777777777554
No 42
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.85 E-value=54 Score=34.01 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
.+|+..|+.-|.++.++-+.|+.+|..+......|+.++.+++++
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888999999999999999999999999887654
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.40 E-value=43 Score=26.14 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTN 181 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~ 181 (599)
+.+.|+.|+.+++.++..|+.-+.+++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888777777766654
No 44
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=41.87 E-value=99 Score=26.58 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 158 VQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 158 Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
|..||..+.+|=++|..==.+.-+.|++++.+++.+.-.
T Consensus 37 l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 37 VAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555556667899999999887443
No 45
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.82 E-value=32 Score=28.41 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTN 181 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~ 181 (599)
-+..|+.+|++-.+|.+.||.-|++++.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999988877653
No 46
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.81 E-value=45 Score=26.44 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
+.+-..|+.|+..+.+|...|+.||.
T Consensus 36 ~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 36 EDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888875
No 47
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.40 E-value=75 Score=27.15 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 156 AVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 156 a~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
..+++||.+|++.|.-+-.=|......+..|+.++..+
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999998888888888999998886553
No 48
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=38.21 E-value=30 Score=26.94 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYN 184 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYn 184 (599)
+++..|+.||..-+++++.+.++|++....++
T Consensus 19 k~ID~LEdeL~~eKek~~~i~~eLD~tl~el~ 50 (52)
T 2z5i_A 19 KLVDDLEDELYAQKLKYKAISEELDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 56888999999999999999999999765544
No 49
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=37.77 E-value=26 Score=27.51 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVT 180 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~ 180 (599)
|..+..+++++.+||+.|++-|.++.
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888776654
No 50
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=37.64 E-value=94 Score=29.86 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHh
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNE-----------------VTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~q-----------------v~~nYnaLQmql~~lmQq 196 (599)
++++.+..||++|+.-=+-|.+||+. +.+.+..+|-.|+.+...
T Consensus 69 e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 129 (186)
T 1oxz_A 69 EKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 129 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999988999999984 566677777777776654
No 51
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=37.09 E-value=7.1 Score=34.21 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDM 175 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~M 175 (599)
+.++..|-.||..++.||.+||++
T Consensus 49 QrQv~qLt~~lQ~~~~Ene~Lke~ 72 (95)
T 3n7n_E 49 QRQIAQLNKQLQLSFQENEKLLSV 72 (95)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999975
No 52
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=37.00 E-value=87 Score=29.40 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHh
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNE-----------------VTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~q-----------------v~~nYnaLQmql~~lmQq 196 (599)
.++++.+..||++|+.-=+-|.+||+. +...+..+|-.|+.+...
T Consensus 52 ~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 52 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999988999999984 566777777777777654
No 53
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.98 E-value=1.1e+02 Score=25.81 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.++..|++.|.+....=+.|..-+.+++..++.|+.|+.++
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ea 61 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQL 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45666777777766677778888888888888888885443
No 54
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.93 E-value=43 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML 176 (599)
.+.|.+-+.-+..||+.||.+|
T Consensus 19 naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHh
Confidence 5667777777888999888776
No 55
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.80 E-value=1.5e+02 Score=25.17 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=35.7
Q ss_pred chhhh---hhHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 145 NMEDK---KAKNEYAVVQAELERVN-------AENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 145 ~~edk---r~K~Ela~Lq~EL~Rv~-------eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
..+|| |.++++...++||.-++ +==+||.+|++++-..-..|+.-+..+
T Consensus 7 AVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565 44667888888886443 334688899999999998888887554
No 56
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=36.13 E-value=52 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYN 184 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYn 184 (599)
+++..|..+|...+++|+.+..+|++....-+
T Consensus 44 KTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELn 75 (77)
T 3mtu_E 44 SEYNDLEEKVAHAKEENLNMHQMLDQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 45777889999999999999999998876654
No 57
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.58 E-value=1.3e+02 Score=25.21 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.++.||+||...-.|=.+|++.|..=.++|-.|---+..+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 6899999999999999999999999999998887777654
No 58
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=35.33 E-value=0.48 Score=42.28 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 158 VQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 158 Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
|+.|++++.+||.+|+.=++.+-..|.+|+.++..
T Consensus 70 L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~s 104 (107)
T 3a5t_A 70 LQQEVEKLASENASMKLELDALRSKYEALQNFART 104 (107)
T ss_dssp TSSTTTTTTSTTSHHHHTTTSSSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888865543
No 59
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=35.32 E-value=1.1e+02 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 152 KNEYAVVQAELERVNAENQRLKDMVNE 178 (599)
Q Consensus 152 K~Ela~Lq~EL~Rv~eENkRLk~ML~q 178 (599)
.++++.+..||++|+.-=+-|.+||+.
T Consensus 43 ~e~~~k~~~eLe~v~~n~~LL~EML~~ 69 (140)
T 1o3x_A 43 MEKISKRVNAIEEVNNNVKLLTEMVMS 69 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355888899999999988999999985
No 60
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.14 E-value=73 Score=33.77 Aligned_cols=9 Identities=22% Similarity=0.505 Sum_probs=5.9
Q ss_pred CchhhhHHH
Q 007546 535 NSLADSVSA 543 (599)
Q Consensus 535 ~~l~dtv~a 543 (599)
..+.||++.
T Consensus 364 ~~~~ETl~T 372 (412)
T 3u06_A 364 DCFQESVKS 372 (412)
T ss_dssp GGHHHHHHH
T ss_pred hhHHHHHHH
Confidence 456788763
No 61
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=34.89 E-value=98 Score=29.05 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.++..|..+|...++.++.+..+|+++...++.++-.|..+
T Consensus 105 k~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 105 KSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 45777888889999999999999999999999998888775
No 62
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.40 E-value=32 Score=34.76 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 162 LERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 162 L~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
++++..++..|......+....+.|+.++..+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~L 87 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLAL 87 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555543
No 63
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.61 E-value=83 Score=33.13 Aligned_cols=36 Identities=8% Similarity=0.181 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQ 189 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmq 189 (599)
+++.|+.+++++.+|.+.|++.|-+-..-=..|+++
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444444333333333
No 64
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.24 E-value=1.3e+02 Score=25.54 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+..|+..|..++.|..+||+.+++....-..|+.+--++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888777777776655554
No 65
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=32.22 E-value=42 Score=22.89 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=15.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 007546 151 AKNEYAVVQAELERVNAENQRLK 173 (599)
Q Consensus 151 ~K~Ela~Lq~EL~Rv~eENkRLk 173 (599)
.|.|...|+.|.+-++.|=+.||
T Consensus 5 lkdevgelkgevralkdevkdlk 27 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDLK 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHhHHHHHHHHHhccC
Confidence 35667777777777777766553
No 66
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=31.81 E-value=41 Score=29.42 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDM 175 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~M 175 (599)
+.+|++|+.++++|.++||+-
T Consensus 9 ~~~l~~~~~~l~~~i~~lkee 29 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENE 29 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666655543
No 67
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=31.59 E-value=90 Score=26.80 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVT 180 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~ 180 (599)
|-..|..+++...+|+..||.|++++.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555655555555543
No 68
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.58 E-value=21 Score=28.23 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
.+-..|+.|+..+.+|+..||.||-
T Consensus 36 ~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 36 AQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999988888874
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.47 E-value=1.1e+02 Score=32.38 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~ 191 (599)
+..++++......|+++++.=.++..+.|..|+....
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENI 547 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhH
Confidence 3334444444444445555444444555554444443
No 70
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.29 E-value=43 Score=27.51 Aligned_cols=6 Identities=0% Similarity=0.418 Sum_probs=2.6
Q ss_pred cccccc
Q 007546 120 VNTGLN 125 (599)
Q Consensus 120 VNTGLn 125 (599)
||.++.
T Consensus 17 in~~f~ 22 (83)
T 1nkp_B 17 IKDSFH 22 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 71
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=30.12 E-value=38 Score=32.87 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKD 174 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ 174 (599)
.+++.|++|.+.+.+||+||..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999964
No 72
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=29.63 E-value=29 Score=28.37 Aligned_cols=20 Identities=50% Similarity=0.617 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007546 158 VQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 158 Lq~EL~Rv~eENkRLk~ML~ 177 (599)
+-.||+|++-|-|||..||=
T Consensus 9 vl~ELeRlkveiQRLE~ml~ 28 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAMLM 28 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56799999999999998874
No 73
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.93 E-value=58 Score=26.98 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNE 178 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~q 178 (599)
=+..|+.++.++.+||..|+..+.+
T Consensus 51 YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3778999999999999999987654
No 74
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.84 E-value=1.9e+02 Score=26.33 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
+++.+..||..++.|...+++=++.+.+.+..|+..+-.+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666666554
No 75
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.80 E-value=1.3e+02 Score=25.44 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
.+|..|+.|+.+++=.++.+.--|+++.+.-..++..|-..
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998888888888888877776443
No 76
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.66 E-value=82 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
.+.|-.|=..+..|..|||.||.
T Consensus 10 VEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 10 VXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh
Confidence 44566666777788889998884
No 77
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.65 E-value=1e+02 Score=32.73 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNN 182 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~n 182 (599)
||..|+++++.+.+++++++.-+..+.+.
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333
No 78
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=27.07 E-value=1.3e+02 Score=24.70 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQ------------RLKDMVNEVTNNYNALQLQLM 191 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENk------------RLk~ML~qv~~nYnaLQmql~ 191 (599)
+...|+.|+-+++.|+. ||+.=++.+.+.|..|...+-
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678888888888875 899999999999988887664
No 79
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=26.97 E-value=1.3e+02 Score=26.25 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQ------------RLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENk------------RLk~ML~qv~~nYnaLQmql~~ 192 (599)
.+...|+.|+-++++|+. ||+.=++.+.+.|..|...|..
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888885 8999999999999999988765
No 80
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.87 E-value=75 Score=28.01 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
++..|+.|+..+..||.||++-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665543
No 81
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=25.86 E-value=1.8e+02 Score=27.78 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=25.5
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHH
Q 007546 155 YAVVQAELER-------VNAENQRLKDMVNEVTNNYNALQ 187 (599)
Q Consensus 155 la~Lq~EL~R-------v~eENkRLk~ML~qv~~nYnaLQ 187 (599)
+..|+.||+| |..||++|-+.|..+.+.+..|.
T Consensus 99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555555 45699999999999999999998
No 82
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.66 E-value=1.5e+02 Score=24.86 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 158 VQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 158 Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
..+||..+.+|-++|++-|.........|..+++.+++.
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e 50 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666554
No 83
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.74 E-value=1.5e+02 Score=25.02 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAFMQH 196 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~lmQq 196 (599)
+..|...++.+.++=++|..-+..+.+.+..|+.+|..++++
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 566788888888889999999999999999999999988765
No 84
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.20 E-value=1.6e+02 Score=26.12 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
--.|...|.++.+||.||+..-...+..-.+|+..+-.+
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL 77 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRL 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 345888999999999999998888888888888777665
No 85
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.96 E-value=1.5e+02 Score=32.54 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMV 176 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML 176 (599)
|+.-|.||.||+..|+.++.-.
T Consensus 11 la~yq~elarvqkana~aka~Y 32 (497)
T 3iox_A 11 LTAYQTELARVQKANADAKAAY 32 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 86
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.98 E-value=1.9e+02 Score=28.52 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQ 187 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQ 187 (599)
|...|..+|+...+|..+||.|+.++.+=-..+|
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777788888888888888877765544444
No 87
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=22.61 E-value=3e+02 Score=21.99 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
++.|+.+..+-.++=+..|+.|.++...+..|+..|-.
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666667777788888888888888877654
No 88
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.97 E-value=2.9e+02 Score=24.55 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
..|+.+++.|-.++.|++....=+++....+..||.+|..+
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555666666666666666553
No 89
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.80 E-value=97 Score=29.90 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVN 177 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~ 177 (599)
....|+++..++.+||+||+.=.+
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777775433
No 90
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.48 E-value=1.7e+02 Score=34.69 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHhH
Q 007546 168 ENQRLKDMVNEVTNNY 183 (599)
Q Consensus 168 ENkRLk~ML~qv~~nY 183 (599)
|...|++-|.+..+.+
T Consensus 992 e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 992 EIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 91
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.45 E-value=85 Score=21.99 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007546 158 VQAELERVNAENQRLKDMVNEVT 180 (599)
Q Consensus 158 Lq~EL~Rv~eENkRLk~ML~qv~ 180 (599)
|.+=|..+..||+.||.-++++.
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566678999887776654
No 92
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.32 E-value=2.4e+02 Score=23.95 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHhhh
Q 007546 155 YAVVQAELERVNAENQRLKD------MVNEVTNNYNALQLQLMAFMQHHN 198 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~------ML~qv~~nYnaLQmql~~lmQqq~ 198 (599)
...++..|+.|..+|+++.. .+.--..-|.+|..+|.++|+.-+
T Consensus 63 a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~ 112 (127)
T 1ez3_A 63 ANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888876531 222235667888888888887654
No 93
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=21.28 E-value=1.3e+02 Score=27.61 Aligned_cols=31 Identities=10% Similarity=0.252 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007546 155 YAVVQAELERVNAENQRLKDMVNEVTNNYNA 185 (599)
Q Consensus 155 la~Lq~EL~Rv~eENkRLk~ML~qv~~nYna 185 (599)
|+.+++|++++.+|=+.|+.|+.+|-++-.+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7789999999999999999999999888776
No 94
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.83 E-value=69 Score=27.95 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLK 173 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk 173 (599)
.++..|+.|+++.++|.++|+
T Consensus 14 ~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 14 DKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555443
No 95
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.78 E-value=95 Score=25.80 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007546 158 VQAELERVNAENQRLKD 174 (599)
Q Consensus 158 Lq~EL~Rv~eENkRLk~ 174 (599)
+++|+++++.||+-|+.
T Consensus 59 l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 59 AVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 96
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.72 E-value=2.3e+02 Score=25.17 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMA 192 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~ 192 (599)
.++..|+..|.+....=+.|..-...+...++.||.+|-.
T Consensus 20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777788888888888877654
No 97
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.52 E-value=1.8e+02 Score=32.20 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007546 154 EYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQL 190 (599)
Q Consensus 154 Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql 190 (599)
|++.+++||..+.+-=.|+++.+.....=|++++|-|
T Consensus 322 ~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~ 358 (551)
T 2b5u_A 322 NYERARAELNQANEDVARNQERQAKAVQVYNSRKSEL 358 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3555666666665555666776666667777777766
No 98
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.19 E-value=65 Score=27.37 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007546 159 QAELERVNAENQRLKDMVNEVTNNYNALQL 188 (599)
Q Consensus 159 q~EL~Rv~eENkRLk~ML~qv~~nYnaLQm 188 (599)
+.=|..+=+||++|..-|++.-+--..|+-
T Consensus 26 R~AL~eaL~EN~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 26 RKALYEALKENEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666777777766666655555553
No 99
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.17 E-value=2e+02 Score=23.69 Aligned_cols=34 Identities=3% Similarity=0.133 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007546 153 NEYAVVQAELERVNAENQRLKDMVNEVTNNYNALQLQLMAF 193 (599)
Q Consensus 153 ~Ela~Lq~EL~Rv~eENkRLk~ML~qv~~nYnaLQmql~~l 193 (599)
..+..|+.++..+..+|..|. .....|+.++..|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~-------~en~~Lr~~i~~L 62 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTT-------LENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 347777888877777777654 3444455544443
Done!