Query 007547
Match_columns 599
No_of_seqs 374 out of 2711
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 12:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 1.1E-99 2E-104 790.5 41.4 480 84-598 1-482 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 1.5E-93 3.2E-98 788.8 37.7 505 73-599 36-548 (645)
3 PRK10953 cysJ sulfite reductas 100.0 1.6E-87 3.5E-92 752.8 51.6 443 82-598 60-504 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 1.6E-86 3.4E-91 747.9 51.7 442 83-598 58-501 (597)
5 COG0369 CysJ Sulfite reductase 100.0 2.2E-82 4.8E-87 701.7 41.1 446 82-599 46-492 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 2E-63 4.3E-68 539.7 34.4 300 291-598 2-320 (416)
7 cd06207 CyPoR_like NADPH cytoc 100.0 2.3E-61 5.1E-66 518.8 32.7 284 299-598 2-285 (382)
8 cd06203 methionine_synthase_re 100.0 9.6E-61 2.1E-65 516.1 32.7 286 299-598 2-298 (398)
9 cd06202 Nitric_oxide_synthase 100.0 2.1E-60 4.5E-65 514.6 34.0 291 299-598 2-305 (406)
10 cd06206 bifunctional_CYPOR The 100.0 1.4E-58 3E-63 497.6 32.9 282 298-598 1-285 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 5.7E-54 1.2E-58 457.9 28.8 260 298-598 1-264 (360)
12 PRK06214 sulfite reductase; Pr 100.0 1.8E-53 3.9E-58 469.1 30.9 273 286-598 160-434 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 1.8E-51 3.9E-56 409.9 20.9 218 288-511 2-219 (219)
14 PRK09004 FMN-binding protein M 100.0 2.4E-33 5.3E-38 262.0 17.7 144 83-239 1-146 (146)
15 PRK08105 flavodoxin; Provision 100.0 6.1E-33 1.3E-37 260.2 18.1 145 83-239 1-147 (149)
16 PRK05723 flavodoxin; Provision 100.0 1.3E-32 2.7E-37 258.2 17.4 145 84-240 1-150 (151)
17 PRK07308 flavodoxin; Validated 99.9 2.6E-26 5.6E-31 214.6 17.4 141 83-236 1-143 (146)
18 PF00258 Flavodoxin_1: Flavodo 99.9 4.5E-27 9.7E-32 218.4 11.4 138 88-231 1-143 (143)
19 PLN03115 ferredoxin--NADP(+) r 99.9 4.1E-26 8.9E-31 242.5 19.4 182 288-598 84-270 (367)
20 PRK06703 flavodoxin; Provision 99.9 2.6E-24 5.6E-29 202.2 17.5 146 83-241 1-149 (151)
21 PRK12359 flavodoxin FldB; Prov 99.9 6.3E-23 1.4E-27 196.2 18.4 143 84-241 1-170 (172)
22 cd06182 CYPOR_like NADPH cytoc 99.9 2.2E-22 4.8E-27 206.6 19.2 123 470-598 47-170 (267)
23 TIGR03224 benzo_boxA benzoyl-C 99.9 3.4E-22 7.4E-27 216.8 21.1 180 289-598 137-320 (411)
24 PRK06756 flavodoxin; Provision 99.9 3.8E-22 8.3E-27 186.8 17.1 142 83-237 1-145 (148)
25 PRK09271 flavodoxin; Provision 99.9 3.6E-22 7.9E-27 189.6 15.8 143 84-240 1-148 (160)
26 PRK11921 metallo-beta-lactamas 99.9 1.3E-22 2.7E-27 219.5 13.9 187 9-239 198-393 (394)
27 PLN03116 ferredoxin--NADP+ red 99.9 5.5E-21 1.2E-25 200.1 19.9 183 289-598 19-211 (307)
28 TIGR01753 flav_short flavodoxi 99.9 2.9E-21 6.3E-26 178.1 15.3 136 86-235 1-139 (140)
29 cd06201 SiR_like2 Cytochrome p 99.9 1.5E-20 3.3E-25 195.1 21.2 103 471-598 100-203 (289)
30 TIGR01752 flav_long flavodoxin 99.9 1.3E-20 2.7E-25 180.3 16.8 140 85-239 1-166 (167)
31 PRK05452 anaerobic nitric oxid 99.9 3.9E-21 8.5E-26 212.1 15.0 188 10-240 203-397 (479)
32 cd06208 CYPOR_like_FNR These f 99.9 3.9E-20 8.4E-25 191.9 21.1 182 289-598 3-190 (286)
33 TIGR01754 flav_RNR ribonucleot 99.8 3.4E-20 7.3E-25 172.2 15.1 133 84-235 1-139 (140)
34 KOG1160 Fe-S oxidoreductase [E 99.8 3.3E-20 7.1E-25 192.5 13.4 144 83-241 46-194 (601)
35 COG0716 FldA Flavodoxins [Ener 99.8 2.7E-19 5.8E-24 168.4 15.8 143 83-238 1-150 (151)
36 PRK09267 flavodoxin FldA; Vali 99.8 9.5E-19 2.1E-23 167.5 17.6 142 83-239 1-167 (169)
37 cd06200 SiR_like1 Cytochrome p 99.8 1.7E-19 3.7E-24 182.9 10.4 124 457-598 33-159 (245)
38 COG0426 FpaA Uncharacterized f 99.7 1.8E-17 3.9E-22 174.5 12.9 168 8-221 198-370 (388)
39 PRK10926 ferredoxin-NADP reduc 99.7 2.1E-17 4.6E-22 167.9 10.1 106 471-598 49-156 (248)
40 PRK13289 bifunctional nitric o 99.7 2.9E-17 6.3E-22 178.0 11.0 107 470-598 204-311 (399)
41 cd00322 FNR_like Ferredoxin re 99.7 2.3E-17 5E-22 163.5 9.0 121 457-598 24-147 (223)
42 PRK05569 flavodoxin; Provision 99.7 2.6E-16 5.7E-21 145.9 15.1 135 83-235 1-139 (141)
43 cd06188 NADH_quinone_reductase 99.7 7.9E-17 1.7E-21 166.8 11.4 117 470-598 85-201 (283)
44 PRK05568 flavodoxin; Provision 99.7 3.8E-16 8.2E-21 144.9 14.6 135 83-235 1-139 (142)
45 cd06189 flavin_oxioreductase N 99.7 8.1E-17 1.8E-21 160.8 10.0 121 457-598 27-148 (224)
46 PRK07609 CDP-6-deoxy-delta-3,4 99.7 7E-17 1.5E-21 171.4 9.3 120 458-598 134-254 (339)
47 PRK05464 Na(+)-translocating N 99.7 1.6E-16 3.6E-21 172.8 11.8 119 468-598 207-325 (409)
48 TIGR01941 nqrF NADH:ubiquinone 99.7 1.9E-16 4.1E-21 172.1 11.8 120 467-598 202-321 (405)
49 PRK05713 hypothetical protein; 99.7 8.6E-17 1.9E-21 168.9 8.8 120 458-598 121-242 (312)
50 PRK10684 HCP oxidoreductase, N 99.7 1.4E-16 3E-21 168.7 10.4 107 471-598 54-161 (332)
51 COG1018 Hmp Flavodoxin reducta 99.7 2.6E-16 5.7E-21 161.0 11.8 105 470-596 52-157 (266)
52 cd06211 phenol_2-monooxygenase 99.7 1.6E-16 3.4E-21 160.2 9.8 121 457-598 37-159 (238)
53 cd06197 FNR_like_2 FAD/NAD(P) 99.7 3.8E-16 8.3E-21 155.9 11.5 108 470-598 59-176 (220)
54 PRK08051 fre FMN reductase; Va 99.7 1.6E-16 3.4E-21 159.9 8.6 121 457-598 31-152 (232)
55 PRK08221 anaerobic sulfite red 99.7 1.9E-16 4.1E-21 162.4 9.2 117 458-598 35-152 (263)
56 cd06194 FNR_N-term_Iron_sulfur 99.7 3.2E-16 7E-21 156.1 10.6 121 457-598 25-147 (222)
57 PRK08345 cytochrome-c3 hydroge 99.7 2.1E-16 4.6E-21 164.2 9.6 120 457-598 39-159 (289)
58 cd06187 O2ase_reductase_like T 99.7 2.9E-16 6.3E-21 156.4 10.0 120 458-598 26-148 (224)
59 cd06190 T4MO_e_transfer_like T 99.7 2E-16 4.3E-21 158.6 8.7 123 457-598 25-149 (232)
60 PRK11872 antC anthranilate dio 99.6 2.1E-16 4.6E-21 167.9 8.6 119 458-598 139-259 (340)
61 cd06210 MMO_FAD_NAD_binding Me 99.6 4E-16 8.8E-21 156.8 10.1 108 470-598 50-158 (236)
62 TIGR02911 sulfite_red_B sulfit 99.6 3.5E-16 7.5E-21 160.3 9.3 119 457-599 32-151 (261)
63 PTZ00274 cytochrome b5 reducta 99.6 4.1E-16 8.9E-21 164.1 10.0 112 470-598 102-215 (325)
64 cd06209 BenDO_FAD_NAD Benzoate 99.6 5.8E-16 1.3E-20 155.0 10.3 105 471-598 47-152 (228)
65 cd06212 monooxygenase_like The 99.6 6.9E-16 1.5E-20 154.8 10.8 108 470-598 45-153 (232)
66 cd06191 FNR_iron_sulfur_bindin 99.6 6.5E-16 1.4E-20 154.9 10.6 107 470-598 45-152 (231)
67 cd06184 flavohem_like_fad_nad_ 99.6 7.1E-16 1.5E-20 156.2 11.0 107 470-598 56-163 (247)
68 TIGR00333 nrdI ribonucleoside- 99.6 1E-15 2.3E-20 138.5 10.2 92 88-206 1-93 (125)
69 cd06218 DHOD_e_trans FAD/NAD b 99.6 1.3E-15 2.9E-20 154.5 12.2 105 469-599 42-147 (246)
70 cd06214 PA_degradation_oxidore 99.6 5.4E-16 1.2E-20 156.3 8.5 120 457-598 34-158 (241)
71 cd06215 FNR_iron_sulfur_bindin 99.6 1.1E-15 2.3E-20 153.1 10.4 108 470-598 45-153 (231)
72 cd06213 oxygenase_e_transfer_s 99.6 1.1E-15 2.3E-20 153.0 10.4 107 470-598 43-150 (227)
73 cd06216 FNR_iron_sulfur_bindin 99.6 1.3E-15 2.8E-20 153.9 11.0 109 470-598 63-172 (243)
74 cd06195 FNR1 Ferredoxin-NADP+ 99.6 1.1E-15 2.3E-20 154.4 9.8 107 470-598 43-151 (241)
75 cd06198 FNR_like_3 NAD(P) bind 99.6 1.8E-15 3.9E-20 150.1 11.1 117 458-598 25-145 (216)
76 cd06221 sulfite_reductase_like 99.6 1.2E-15 2.7E-20 155.4 9.7 120 457-598 29-149 (253)
77 cd06196 FNR_like_1 Ferredoxin 99.6 1.6E-15 3.5E-20 150.6 9.6 106 469-599 45-150 (218)
78 cd06185 PDR_like Phthalate dio 99.6 2.9E-15 6.3E-20 147.9 10.7 120 457-599 27-147 (211)
79 TIGR02160 PA_CoA_Oxy5 phenylac 99.6 1.9E-15 4E-20 161.3 9.7 106 471-598 51-159 (352)
80 cd06220 DHOD_e_trans_like2 FAD 99.6 1.9E-15 4.2E-20 152.0 9.3 111 457-599 25-136 (233)
81 cd06183 cyt_b5_reduct_like Cyt 99.6 2.3E-15 4.9E-20 150.7 8.8 122 457-598 30-155 (234)
82 PRK00054 dihydroorotate dehydr 99.6 3.1E-15 6.7E-20 152.2 9.5 115 457-599 33-151 (250)
83 PTZ00319 NADH-cytochrome B5 re 99.6 5.6E-15 1.2E-19 154.3 10.0 120 469-599 84-218 (300)
84 cd06192 DHOD_e_trans_like FAD/ 99.6 1E-14 2.2E-19 147.6 11.4 115 459-598 28-145 (243)
85 cd06217 FNR_iron_sulfur_bindin 99.6 6.4E-15 1.4E-19 147.8 9.6 107 471-598 50-157 (235)
86 COG0543 UbiB 2-polyprenylpheno 99.5 3.3E-14 7.2E-19 144.9 10.1 122 456-598 36-157 (252)
87 PRK02551 flavoprotein NrdI; Pr 99.5 1.8E-13 3.8E-18 128.2 13.0 143 83-237 1-151 (154)
88 PRK06222 ferredoxin-NADP(+) re 99.5 5.8E-14 1.3E-18 145.4 10.7 115 458-598 30-146 (281)
89 PRK03600 nrdI ribonucleotide r 99.5 2.1E-13 4.6E-18 125.3 13.2 124 85-237 2-130 (134)
90 cd06219 DHOD_e_trans_like1 FAD 99.5 6.9E-14 1.5E-18 142.2 10.7 115 458-598 29-145 (248)
91 PRK05802 hypothetical protein; 99.5 7.4E-14 1.6E-18 147.0 10.1 105 469-598 111-220 (320)
92 PRK06242 flavodoxin; Provision 99.5 4.1E-13 9E-18 125.6 11.8 108 84-215 1-109 (150)
93 KOG0534 NADH-cytochrome b-5 re 99.5 2.3E-13 5E-18 139.1 10.5 110 469-598 98-207 (286)
94 cd06186 NOX_Duox_like_FAD_NADP 99.4 3.4E-13 7.5E-18 133.0 10.5 119 469-598 42-161 (210)
95 PLN02252 nitrate reductase [NA 99.4 3.1E-13 6.7E-18 158.4 11.3 131 457-598 666-809 (888)
96 COG2871 NqrF Na+-transporting 99.4 7.9E-13 1.7E-17 131.7 6.4 118 470-599 210-327 (410)
97 cd06193 siderophore_interactin 99.3 2E-12 4.3E-17 130.4 7.5 104 469-596 62-165 (235)
98 PRK03767 NAD(P)H:quinone oxido 99.3 2.1E-11 4.5E-16 120.1 14.5 128 83-214 1-143 (200)
99 TIGR01755 flav_wrbA NAD(P)H:qu 99.3 2.4E-11 5.1E-16 119.4 14.8 126 84-214 1-142 (197)
100 PTZ00306 NADH-dependent fumara 99.3 4.1E-12 8.9E-17 154.4 10.3 123 457-598 949-1084(1167)
101 PRK11104 hemG protoporphyrinog 99.3 2.4E-11 5.1E-16 117.4 13.1 87 84-186 1-87 (177)
102 PRK12778 putative bifunctional 99.3 8.7E-12 1.9E-16 145.8 10.2 115 458-598 30-146 (752)
103 COG4097 Predicted ferric reduc 99.3 1.1E-11 2.5E-16 128.0 8.9 106 468-598 259-365 (438)
104 PLN02631 ferric-chelate reduct 99.2 3.7E-11 8.1E-16 136.9 11.2 115 469-598 351-467 (699)
105 PLN02292 ferric-chelate reduct 99.1 2.1E-10 4.5E-15 131.1 11.6 117 468-597 367-485 (702)
106 PRK12779 putative bifunctional 99.1 1.1E-10 2.3E-15 138.7 9.2 116 457-597 678-797 (944)
107 PLN02844 oxidoreductase/ferric 99.1 5.6E-10 1.2E-14 127.9 12.0 118 469-598 355-478 (722)
108 PRK07116 flavodoxin; Provision 99.1 1.4E-09 3E-14 103.4 12.5 133 83-235 2-158 (160)
109 PF12724 Flavodoxin_5: Flavodo 99.0 2E-09 4.4E-14 100.3 12.2 84 87-188 1-86 (143)
110 PRK12775 putative trifunctiona 99.0 7.9E-10 1.7E-14 132.4 10.5 115 458-598 30-147 (1006)
111 PF07972 Flavodoxin_NdrI: NrdI 99.0 3.1E-09 6.7E-14 95.9 9.4 115 88-231 1-120 (122)
112 PF03358 FMN_red: NADPH-depend 98.9 2.9E-08 6.3E-13 92.9 13.5 125 84-214 1-142 (152)
113 PF00175 NAD_binding_1: Oxidor 98.9 2.2E-09 4.7E-14 94.5 4.7 46 548-598 1-46 (109)
114 COG1780 NrdI Protein involved 98.9 2.3E-08 5E-13 90.3 11.1 128 85-240 2-134 (141)
115 PF12641 Flavodoxin_3: Flavodo 98.7 6.9E-08 1.5E-12 91.7 10.2 94 87-206 1-98 (160)
116 COG4635 HemG Flavodoxin [Energ 98.6 5.4E-08 1.2E-12 90.1 6.8 110 84-209 1-113 (175)
117 PF12682 Flavodoxin_4: Flavodo 98.5 9E-07 1.9E-11 83.8 10.4 132 85-235 1-156 (156)
118 PRK10569 NAD(P)H-dependent FMN 98.4 9.4E-06 2E-10 79.5 16.2 120 84-212 1-133 (191)
119 TIGR03567 FMN_reduc_SsuE FMN r 98.3 1.8E-05 3.8E-10 76.1 14.7 119 85-212 1-132 (171)
120 PRK00170 azoreductase; Reviewe 98.2 6.4E-05 1.4E-09 73.7 17.4 156 83-240 1-196 (201)
121 KOG3378 Globins and related he 98.2 9.2E-07 2E-11 88.4 3.9 79 474-567 204-286 (385)
122 PRK09739 hypothetical protein; 98.1 8.5E-05 1.8E-09 73.1 16.3 156 83-241 3-196 (199)
123 PRK01355 azoreductase; Reviewe 98.1 0.00014 2.9E-09 71.7 17.2 158 83-241 1-194 (199)
124 TIGR03566 FMN_reduc_MsuE FMN r 98.1 6.6E-05 1.4E-09 72.3 14.2 120 85-212 1-135 (174)
125 PRK06934 flavodoxin; Provision 98.1 4.9E-05 1.1E-09 75.8 12.9 132 86-235 62-217 (221)
126 PF02525 Flavodoxin_2: Flavodo 98.1 0.00016 3.6E-09 70.8 16.4 152 84-239 1-199 (199)
127 PRK13556 azoreductase; Provisi 98.0 0.00047 1E-08 68.3 17.7 157 83-241 1-203 (208)
128 COG0655 WrbA Multimeric flavod 97.9 0.00013 2.8E-09 72.3 12.4 123 85-212 5-148 (207)
129 PF00970 FAD_binding_6: Oxidor 97.7 4.7E-05 1E-09 65.9 4.8 52 470-537 47-98 (99)
130 PRK06567 putative bifunctional 97.5 0.00036 7.8E-09 82.5 10.6 80 458-557 821-907 (1028)
131 TIGR02690 resist_ArsH arsenica 97.3 0.0049 1.1E-07 61.6 14.4 126 82-212 25-161 (219)
132 PF08030 NAD_binding_6: Ferric 97.2 0.0005 1.1E-08 64.3 4.9 53 545-597 3-56 (156)
133 PRK04930 glutathione-regulated 97.2 0.035 7.5E-07 54.1 17.7 158 81-242 3-178 (184)
134 PRK13555 azoreductase; Provisi 97.1 0.038 8.2E-07 54.9 18.1 129 83-212 1-175 (208)
135 KOG0039 Ferric reductase, NADH 96.8 0.0044 9.5E-08 71.6 9.2 110 468-591 397-525 (646)
136 KOG3135 1,4-benzoquinone reduc 96.5 0.03 6.5E-07 52.8 11.1 129 84-219 2-147 (203)
137 COG0431 Predicted flavoprotein 95.8 0.1 2.2E-06 50.7 11.2 122 84-214 1-136 (184)
138 PRK00871 glutathione-regulated 95.4 0.42 9.1E-06 46.2 13.9 152 86-241 2-169 (176)
139 COG2249 MdaB Putative NADPH-qu 93.0 2.5 5.4E-05 41.4 13.5 156 84-242 1-187 (189)
140 PRK02261 methylaspartate mutas 91.6 5.5 0.00012 36.8 13.5 129 84-236 2-134 (137)
141 TIGR01501 MthylAspMutase methy 89.9 6.5 0.00014 36.3 12.1 127 87-234 3-130 (134)
142 COG2375 ViuB Siderophore-inter 87.4 2.5 5.3E-05 43.5 8.2 85 467-567 83-167 (265)
143 cd02072 Glm_B12_BD B12 binding 85.8 10 0.00022 34.7 10.6 114 88-216 2-116 (128)
144 PF08021 FAD_binding_9: Sidero 85.3 0.8 1.7E-05 41.2 3.2 55 467-536 63-117 (117)
145 TIGR00640 acid_CoA_mut_C methy 81.2 9.7 0.00021 35.0 8.6 112 85-216 2-113 (132)
146 KOG0560 Sulfite reductase (fer 81.1 0.68 1.5E-05 50.6 1.1 60 182-241 1-68 (638)
147 PRK05907 hypothetical protein; 74.3 65 0.0014 34.0 13.6 133 75-238 10-149 (311)
148 cd02067 B12-binding B12 bindin 65.5 93 0.002 27.4 10.8 108 88-215 2-109 (119)
149 PF06283 ThuA: Trehalose utili 63.5 27 0.00059 34.5 7.6 75 85-167 1-80 (217)
150 cd05566 PTS_IIB_galactitol PTS 63.4 21 0.00045 29.9 5.9 34 84-119 1-34 (89)
151 PRK09622 porA pyruvate flavodo 61.8 74 0.0016 35.0 11.3 109 83-202 268-382 (407)
152 cd06533 Glyco_transf_WecG_TagA 61.6 36 0.00077 32.6 7.8 40 74-118 37-76 (171)
153 PF13433 Peripla_BP_5: Peripla 60.8 33 0.00071 37.1 8.0 104 83-216 66-170 (363)
154 TIGR02667 moaB_proteo molybden 60.5 11 0.00024 35.9 4.0 56 175-231 2-58 (163)
155 cd05009 SIS_GlmS_GlmD_2 SIS (S 59.2 50 0.0011 30.0 8.2 82 75-167 6-87 (153)
156 KOG4530 Predicted flavoprotein 58.9 21 0.00046 33.8 5.4 31 136-167 84-114 (199)
157 PF03808 Glyco_tran_WecB: Glyc 58.9 64 0.0014 30.8 9.1 88 80-187 45-135 (172)
158 PF00970 FAD_binding_6: Oxidor 57.5 29 0.00064 29.3 5.9 38 297-339 2-41 (99)
159 COG1182 AcpD Acyl carrier prot 56.3 2.1E+02 0.0046 28.3 16.6 129 83-212 1-172 (202)
160 PRK10310 PTS system galactitol 55.5 23 0.00049 30.5 4.8 36 84-121 3-38 (94)
161 PRK05752 uroporphyrinogen-III 54.4 57 0.0012 33.1 8.4 90 99-214 13-107 (255)
162 cd02071 MM_CoA_mut_B12_BD meth 53.6 1.5E+02 0.0032 26.5 10.0 108 88-216 2-110 (122)
163 PF09314 DUF1972: Domain of un 52.3 1.8E+02 0.0039 28.4 11.0 117 83-215 1-125 (185)
164 cd00578 L-fuc_L-ara-isomerases 51.1 1.4E+02 0.0029 33.2 11.3 130 85-234 2-151 (452)
165 KOG1160 Fe-S oxidoreductase [E 50.3 20 0.00044 39.3 4.3 127 82-215 356-488 (601)
166 PRK05928 hemD uroporphyrinogen 48.4 93 0.002 30.7 8.7 98 84-212 2-103 (249)
167 PF09651 Cas_APE2256: CRISPR-a 48.2 35 0.00076 31.5 5.1 42 86-129 24-65 (136)
168 cd06212 monooxygenase_like The 47.4 39 0.00085 33.4 5.8 42 295-341 1-43 (232)
169 cd05567 PTS_IIB_mannitol PTS_I 47.3 49 0.0011 27.7 5.5 40 84-125 1-42 (87)
170 PRK09212 pyruvate dehydrogenas 45.8 56 0.0012 34.8 6.9 78 81-167 200-278 (327)
171 PRK08811 uroporphyrinogen-III 45.6 1.1E+02 0.0025 31.3 9.0 97 83-213 18-118 (266)
172 PRK14194 bifunctional 5,10-met 45.2 4E+02 0.0086 28.1 14.2 117 83-212 33-187 (301)
173 cd03142 GATase1_ThuA Type 1 gl 44.3 1E+02 0.0022 30.8 8.1 63 100-167 24-87 (215)
174 cd06200 SiR_like1 Cytochrome p 44.0 41 0.00089 33.9 5.4 39 302-340 5-44 (245)
175 COG1587 HemD Uroporphyrinogen- 43.5 64 0.0014 32.7 6.7 91 99-214 11-103 (248)
176 PF04392 ABC_sub_bind: ABC tra 43.4 36 0.00078 35.2 5.0 64 79-145 127-190 (294)
177 cd05563 PTS_IIB_ascorbate PTS_ 42.8 56 0.0012 27.0 5.2 38 85-124 1-40 (86)
178 PF02302 PTS_IIB: PTS system, 42.5 51 0.0011 27.3 4.9 37 85-123 1-37 (90)
179 PRK07168 bifunctional uroporph 41.3 91 0.002 35.0 8.0 89 98-211 260-351 (474)
180 cd07363 45_DOPA_Dioxygenase Th 41.3 90 0.002 31.8 7.4 82 98-190 80-163 (253)
181 PRK09590 celB cellobiose phosp 40.8 41 0.00088 29.6 4.1 35 83-120 1-35 (104)
182 COG1810 Uncharacterized protei 40.6 3.5E+02 0.0075 27.2 10.9 126 83-239 1-133 (224)
183 cd06578 HemD Uroporphyrinogen- 40.2 1.2E+02 0.0025 29.6 7.9 89 101-214 10-102 (239)
184 PF08022 FAD_binding_8: FAD-bi 39.7 5.6 0.00012 34.8 -1.5 33 470-515 49-81 (105)
185 cd00758 MoCF_BD MoCF_BD: molyb 39.7 29 0.00063 31.6 3.2 53 179-231 1-55 (133)
186 cd06578 HemD Uroporphyrinogen- 38.9 1.6E+02 0.0035 28.6 8.7 102 84-214 121-226 (239)
187 cd06386 PBP1_NPR_C_like Ligand 38.2 1.5E+02 0.0033 31.8 9.0 91 82-186 136-230 (387)
188 TIGR00853 pts-lac PTS system, 38.1 45 0.00098 28.7 3.9 35 83-120 3-37 (95)
189 COG2185 Sbm Methylmalonyl-CoA 37.7 1.6E+02 0.0035 27.5 7.7 111 83-216 12-123 (143)
190 cd00133 PTS_IIB PTS_IIB: subun 37.7 63 0.0014 25.7 4.7 30 85-116 1-30 (84)
191 COG0429 Predicted hydrolase of 37.5 1.5E+02 0.0033 31.7 8.3 98 85-212 77-174 (345)
192 cd06393 PBP1_iGluR_Kainate_Glu 37.3 1.7E+02 0.0037 31.3 9.2 91 82-188 138-229 (384)
193 PRK14192 bifunctional 5,10-met 37.2 5E+02 0.011 27.0 14.6 48 154-211 139-186 (283)
194 cd06196 FNR_like_1 Ferredoxin 36.8 63 0.0014 31.5 5.3 40 296-341 2-41 (218)
195 COG1587 HemD Uroporphyrinogen- 36.5 2.1E+02 0.0045 28.9 9.2 101 83-214 123-228 (248)
196 PRK14188 bifunctional 5,10-met 36.4 5.3E+02 0.012 27.1 15.0 117 83-212 32-186 (296)
197 PRK08366 vorA 2-ketoisovalerat 35.3 2.6E+02 0.0057 30.5 10.2 108 83-202 260-372 (390)
198 cd05568 PTS_IIB_bgl_like PTS_I 34.9 26 0.00056 28.7 1.9 27 85-111 2-28 (85)
199 PF02780 Transketolase_C: Tran 34.5 7.5 0.00016 34.9 -1.6 58 82-145 9-67 (124)
200 PTZ00110 helicase; Provisional 34.5 4.4E+02 0.0095 30.1 12.3 112 82-208 376-500 (545)
201 COG3414 SgaB Phosphotransferas 34.1 1.3E+02 0.0029 25.9 6.1 43 83-127 1-45 (93)
202 PRK09548 PTS system ascorbate- 34.0 72 0.0016 36.7 5.7 42 82-125 505-548 (602)
203 PF06144 DNA_pol3_delta: DNA p 33.9 2.3E+02 0.0049 26.3 8.5 131 87-238 1-139 (172)
204 PRK09189 uroporphyrinogen-III 33.9 1.3E+02 0.0028 30.1 7.1 85 101-213 12-98 (240)
205 PRK07452 DNA polymerase III su 33.6 4.1E+02 0.0089 27.7 11.2 136 84-236 1-143 (326)
206 cd06352 PBP1_NPR_GC_like Ligan 32.8 3.2E+02 0.0068 29.0 10.4 91 82-185 136-229 (389)
207 PF04295 GD_AH_C: D-galactarat 32.4 4.6E+02 0.01 28.8 11.3 126 83-240 17-145 (396)
208 PRK00054 dihydroorotate dehydr 32.2 1E+02 0.0022 31.1 6.1 42 294-341 4-45 (250)
209 PRK10427 putative PTS system f 32.1 1.5E+02 0.0032 26.6 6.4 56 83-146 2-65 (114)
210 cd01075 NAD_bind_Leu_Phe_Val_D 31.7 98 0.0021 30.3 5.7 32 174-213 25-56 (200)
211 PRK14186 bifunctional 5,10-met 31.6 6.4E+02 0.014 26.6 12.8 116 83-211 32-185 (297)
212 cd00886 MogA_MoaB MogA_MoaB fa 31.3 59 0.0013 30.3 3.9 54 178-231 1-56 (152)
213 cd06214 PA_degradation_oxidore 31.2 63 0.0014 32.0 4.3 41 295-340 2-45 (241)
214 cd06209 BenDO_FAD_NAD Benzoate 31.0 1.1E+02 0.0024 30.1 6.0 41 295-340 2-43 (228)
215 cd06217 FNR_iron_sulfur_bindin 30.8 1E+02 0.0023 30.3 5.8 40 296-340 3-43 (235)
216 cd07371 2A5CPDO_AB The alpha a 30.6 2.3E+02 0.0049 29.2 8.4 104 97-207 86-205 (268)
217 PF08357 SEFIR: SEFIR domain; 30.2 1.4E+02 0.0029 27.4 6.1 63 84-147 1-67 (150)
218 cd06389 PBP1_iGluR_AMPA_GluR2 29.5 2.8E+02 0.0061 29.6 9.3 88 82-184 117-211 (370)
219 PRK08367 porA pyruvate ferredo 29.2 4.2E+02 0.0091 29.0 10.5 105 83-199 262-371 (394)
220 PRK14180 bifunctional 5,10-met 29.2 6.8E+02 0.015 26.1 14.0 118 83-212 31-186 (282)
221 PRK15083 PTS system mannitol-s 29.2 78 0.0017 36.9 5.2 38 83-122 378-416 (639)
222 cd06388 PBP1_iGluR_AMPA_GluR4 29.0 2.9E+02 0.0062 29.7 9.2 79 82-169 123-202 (371)
223 PF13380 CoA_binding_2: CoA bi 28.9 1.1E+02 0.0023 27.3 4.9 96 96-216 11-110 (116)
224 TIGR00177 molyb_syn molybdenum 28.8 51 0.0011 30.5 3.0 53 179-231 2-63 (144)
225 PF02593 dTMP_synthase: Thymid 28.5 6.2E+02 0.013 25.4 12.2 121 88-233 2-128 (217)
226 KOG1448 Ribose-phosphate pyrop 28.1 4.4E+02 0.0095 27.8 9.6 125 83-219 1-131 (316)
227 cd03030 GRX_SH3BGR Glutaredoxi 28.1 1.6E+02 0.0034 25.3 5.6 65 86-153 2-73 (92)
228 PF01866 Diphthamide_syn: Puta 28.1 1.4E+02 0.003 31.4 6.4 59 82-145 208-267 (307)
229 cd06211 phenol_2-monooxygenase 27.9 1.3E+02 0.0028 29.9 6.0 42 294-340 6-48 (238)
230 cd06184 flavohem_like_fad_nad_ 27.9 1.6E+02 0.0034 29.4 6.5 42 295-341 7-50 (247)
231 PF13684 Dak1_2: Dihydroxyacet 27.8 1.1E+02 0.0024 32.4 5.6 49 74-124 254-303 (313)
232 cd01391 Periplasmic_Binding_Pr 27.6 4.5E+02 0.0097 24.9 9.7 30 82-111 123-152 (269)
233 PRK11727 23S rRNA mA1618 methy 27.5 49 0.0011 35.2 2.9 24 538-561 110-134 (321)
234 CHL00144 odpB pyruvate dehydro 27.0 1.2E+02 0.0026 32.2 5.8 95 81-187 200-295 (327)
235 PRK10684 HCP oxidoreductase, N 26.3 1.3E+02 0.0029 31.7 6.0 45 291-341 6-50 (332)
236 cd05564 PTS_IIB_chitobiose_lic 26.0 89 0.0019 26.8 3.7 86 85-194 1-86 (96)
237 COG4245 TerY Uncharacterized p 26.0 2.6E+02 0.0056 27.6 7.1 73 93-188 76-148 (207)
238 PLN02234 1-deoxy-D-xylulose-5- 25.6 3E+02 0.0064 32.3 8.9 79 81-169 543-622 (641)
239 cd06213 oxygenase_e_transfer_s 25.2 1.5E+02 0.0032 29.2 5.7 39 296-340 2-40 (227)
240 TIGR00696 wecB_tagA_cpsF bacte 25.1 3E+02 0.0066 26.5 7.6 36 80-120 45-80 (177)
241 PRK14315 glmM phosphoglucosami 25.1 2.7E+02 0.0059 30.8 8.3 61 85-150 44-104 (448)
242 PF04908 SH3BGR: SH3-binding, 25.1 1.7E+02 0.0036 25.6 5.3 39 84-124 1-41 (99)
243 PRK12571 1-deoxy-D-xylulose-5- 25.0 2.3E+02 0.005 33.1 8.0 58 82-145 504-561 (641)
244 PRK13608 diacylglycerol glucos 24.9 1.2E+02 0.0026 32.8 5.4 42 82-123 4-46 (391)
245 cd06189 flavin_oxioreductase N 24.5 1.3E+02 0.0028 29.5 5.1 38 298-341 2-39 (224)
246 PRK00257 erythronate-4-phospha 24.2 1.7E+02 0.0037 31.9 6.3 67 136-213 77-144 (381)
247 cd06216 FNR_iron_sulfur_bindin 23.9 1.5E+02 0.0033 29.4 5.6 41 295-340 18-58 (243)
248 PF00994 MoCF_biosynth: Probab 23.9 54 0.0012 30.1 2.1 53 181-233 1-55 (144)
249 PTZ00182 3-methyl-2-oxobutanat 23.8 1.9E+02 0.0042 31.1 6.7 78 81-167 232-310 (355)
250 PF13439 Glyco_transf_4: Glyco 23.8 1.1E+02 0.0024 27.6 4.2 39 86-126 3-41 (177)
251 PLN02582 1-deoxy-D-xylulose-5- 23.6 5.3E+02 0.012 30.4 10.5 93 82-187 543-636 (677)
252 PRK11892 pyruvate dehydrogenas 23.4 1.9E+02 0.0041 32.5 6.6 95 81-187 339-434 (464)
253 cd06335 PBP1_ABC_ligand_bindin 23.4 4.3E+02 0.0093 27.6 9.2 76 83-169 138-217 (347)
254 PRK07119 2-ketoisovalerate fer 23.3 2E+02 0.0042 31.0 6.6 60 83-148 247-307 (352)
255 cd01536 PBP1_ABC_sugar_binding 23.2 6.8E+02 0.015 24.1 13.1 37 86-124 2-39 (267)
256 cd06373 PBP1_NPR_like Ligand b 23.0 6E+02 0.013 27.1 10.4 90 82-184 141-235 (396)
257 COG4123 Predicted O-methyltran 23.0 55 0.0012 33.5 2.1 19 543-561 45-63 (248)
258 PRK13609 diacylglycerol glucos 22.8 1.3E+02 0.0029 31.9 5.2 39 82-122 3-42 (380)
259 PRK14187 bifunctional 5,10-met 22.6 9.1E+02 0.02 25.4 14.2 117 83-212 32-188 (294)
260 TIGR00936 ahcY adenosylhomocys 22.4 2.7E+02 0.0058 30.7 7.4 31 175-213 193-223 (406)
261 PF02875 Mur_ligase_C: Mur lig 22.4 1.1E+02 0.0023 25.6 3.6 48 154-210 23-74 (91)
262 COG0837 Glk Glucokinase [Carbo 22.1 1.2E+02 0.0026 32.0 4.3 18 539-556 127-144 (320)
263 PRK07609 CDP-6-deoxy-delta-3,4 21.9 1.8E+02 0.0039 30.7 6.0 42 294-340 102-144 (339)
264 smart00852 MoCF_biosynth Proba 21.7 68 0.0015 29.1 2.3 51 182-232 2-55 (135)
265 PF02826 2-Hacid_dh_C: D-isome 21.7 1.5E+02 0.0034 28.2 4.9 33 173-213 32-64 (178)
266 PRK01372 ddl D-alanine--D-alan 21.7 2.2E+02 0.0047 29.4 6.4 42 83-126 4-48 (304)
267 PRK05629 hypothetical protein; 21.7 9.2E+02 0.02 25.1 12.8 130 84-238 6-141 (318)
268 PF14606 Lipase_GDSL_3: GDSL-l 21.6 2.4E+02 0.0052 27.4 6.1 115 85-213 2-140 (178)
269 PRK08051 fre FMN reductase; Va 21.5 1.9E+02 0.0041 28.6 5.7 39 295-339 3-41 (232)
270 PF13458 Peripla_BP_6: Peripla 21.5 6.9E+02 0.015 25.5 10.3 139 82-233 39-188 (343)
271 PRK14182 bifunctional 5,10-met 21.5 9.4E+02 0.02 25.1 13.2 117 83-212 30-185 (282)
272 PF06753 Bradykinin: Bradykini 21.5 22 0.00047 21.0 -0.6 10 553-562 6-15 (19)
273 cd06385 PBP1_NPR_A Ligand-bind 21.4 4.5E+02 0.0098 28.2 9.1 91 82-185 142-237 (405)
274 PRK15438 erythronate-4-phospha 21.2 2.2E+02 0.0048 31.0 6.5 67 136-213 77-144 (378)
275 cd06384 PBP1_NPR_B Ligand-bind 21.2 2.7E+02 0.0058 29.9 7.2 87 85-186 146-238 (399)
276 COG5012 Predicted cobalamin bi 21.2 2.6E+02 0.0056 28.2 6.3 89 85-184 104-193 (227)
277 cd07373 2A5CPDO_A The alpha su 20.8 2.7E+02 0.0059 28.6 6.8 86 96-190 88-179 (271)
278 PF01910 DUF77: Domain of unkn 20.4 2.4E+02 0.0051 24.2 5.2 63 152-222 13-78 (92)
279 PRK06975 bifunctional uroporph 20.1 3.5E+02 0.0077 31.7 8.3 83 100-210 14-101 (656)
280 PF02310 B12-binding: B12 bind 20.1 5.7E+02 0.012 22.0 8.7 71 101-184 17-88 (121)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-99 Score=790.52 Aligned_cols=480 Identities=31% Similarity=0.524 Sum_probs=421.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
++++|+||||||||+++|+.|.+++..+ |..+.|+.||+||.++ |.+.+++||+|||+|+|++|+||..||.
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~--~~~~~V~s~Deyd~~~------ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRR--GLQCLVMSMDEYDVEK------LLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhc--cCCceEeeccccCHhH------hccCceEEEEEecCCCCCCCccHHHHHH
Confidence 5799999999999999999999999988 8889999999999988 9999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHHH
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L~~ 241 (599)
+|...+....+|++++|||||||||+|+.||.++|+++++|.+|||+.++++|+|||++ +.+..|..|..++|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99988777789999999999999999999999999999999999999999999999998 7999999999999999998
Q ss_pred hccCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEe
Q 007547 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (599)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di 321 (599)
+....... ....|....+..|++-.+... ....+... +..+ ..+-| ++++.|++||+.+|+++++|++|+|
T Consensus 153 i~~p~~~~-t~l~~~~~~~~k~~~l~~~~~-~~~~d~~~-v~~~----~~~~~--~k~~~N~rlT~~~HfQDVR~~~F~i 223 (574)
T KOG1159|consen 153 IYPPYRPE-TDLIPTVQITTKYSLLELGKA-SDFSDSDI-VLEP----QGQIP--AKLVENRRLTSADHFQDVRLFEFDI 223 (574)
T ss_pred hcCCCCCc-ccCCCcccccchhhhhhcccc-ccCCcchh-hhcc----ccccc--cchhcceeecCcchhheeeEEEEec
Confidence 76521110 000121223334444332211 11111100 0001 11222 8999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCcc
Q 007547 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (599)
Q Consensus 322 ~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~ 401 (599)
.++...|+|||.+.|+|.|+++.|++|++.+||++++...+.....+.. +...-+|.|+|+++++++|+|+++.|+
T Consensus 224 ~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~----~~~~~~~~p~sl~~~lk~~~D~~SvPr 299 (574)
T KOG1159|consen 224 PDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRS----SPLPLLPNPLSLLNLLKYVLDFNSVPR 299 (574)
T ss_pred CCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccc----ccccccCCchhHHHHHHHhcccccCcc
Confidence 9999999999999999999999999999999999987766665554322 222248999999999999999999999
Q ss_pred HHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCC
Q 007547 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (599)
Q Consensus 402 k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~ 481 (599)
|+||..|++|++|+.||+||++++|++|.++|++|+.+++||++|||++|+|.++|++++++++ |.|+||+|||||+|.
T Consensus 300 rsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~~-P~IrPR~fSIas~~~ 378 (574)
T KOG1159|consen 300 RSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDLL-PVIRPRAFSIASSPG 378 (574)
T ss_pred hHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHhc-cccccceeeeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred CCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEEeCCCChHHHHHH
Q 007547 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 561 (599)
Q Consensus 482 ~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImIg~GTGIAPfrsf 561 (599)
.+ .++|+|++|+|++.-.++|+|+||+||++|++| +.+++.+++|++.+|.+.++|+||||||||||||||+
T Consensus 379 ~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g------~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa~ 450 (574)
T KOG1159|consen 379 AH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPG------DEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFRAL 450 (574)
T ss_pred CC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCC------CeEEEEEecCccccCCCCCCCeEEEcCCCCcccHHHH
Confidence 64 499999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 562 LQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 562 lqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|||+.+ ...+..||||||++++||+|++||+
T Consensus 451 i~er~~q-----~~~~~~lFfGCR~K~~Df~y~~eW~ 482 (574)
T KOG1159|consen 451 IQERIYQ-----GDKENVLFFGCRNKDKDFLYEDEWT 482 (574)
T ss_pred HHHHHhh-----ccCCceEEEecccCCccccccchhh
Confidence 9999973 2355699999999999999999996
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.5e-93 Score=788.77 Aligned_cols=505 Identities=45% Similarity=0.723 Sum_probs=429.2
Q ss_pred hhhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhh-ccCCeEEEEeecCCC
Q 007547 73 EDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-KKETLAFFMVATYGD 151 (599)
Q Consensus 73 ~~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l-~~~~~vif~~sTyG~ 151 (599)
......+...+.+++|+|+|||||+|.+|..+++.+ ++|. .+.+.+.|++.-. + ...++++|+.+|||+
T Consensus 36 ~~~~~~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~---~~~~~~~d~~~~~------l~~~~~l~~~~~at~g~ 105 (645)
T KOG1158|consen 36 YSLKLKVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFE---LKVLKVADYDLYA------LEDHEKLLVVVLATYGE 105 (645)
T ss_pred hhHHHHhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhcc---ccceeecchhhcc------cccccceeeeeeehhcC
Confidence 466677778899999999999999999999999999 7765 6666666666544 4 466899999999999
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHH
Q 007547 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
|+||+|+..|.+|+.+.... ....++|+|||+||++|++||++++.++++|+++|++|+..+|+||++.+.|++|..|
T Consensus 106 gd~~dn~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w 183 (645)
T KOG1158|consen 106 GDPPDNAEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTW 183 (645)
T ss_pred CCCCccHHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHH
Confidence 99999999999999886432 2445899999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCC--CCCCCCCCCCCCeeEEEEEeeeecCCC
Q 007547 232 RELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNM--PNGNASFDIHHPCRVNVAVRRELHKPD 309 (599)
Q Consensus 232 ~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~a~V~~~~~L~~~~ 309 (599)
++.+|+++++.+..++.. . .+.......++.................. .+...+++..+||.+.++.+++|+++.
T Consensus 184 ~~~~~~~~~~~f~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (645)
T KOG1158|consen 184 KKPLLPELCETFSLEEDE-A--TKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPS 260 (645)
T ss_pred HHHHhHhhhheeeecccc-c--cCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCC
Confidence 999999999987655332 1 11111111111111100000000111111 123367899999999999999999888
Q ss_pred CCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCC-CCCCCCCCCCCCchHHHH
Q 007547 310 SDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGT-PRGSSLTPPFPGPCTLRT 388 (599)
Q Consensus 310 ~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~-~~~~~~~~pfp~p~tl~~ 388 (599)
+.|+|+|+++++.+++++|+||||++|+|.|+.+.|++++++|+++++..+.++....+.+ +.....+.|||.|||+++
T Consensus 261 ~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~ 340 (645)
T KOG1158|consen 261 SDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRT 340 (645)
T ss_pred CceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHH
Confidence 8899999999999999999999999999999999999999999999876555554443211 333457889999999999
Q ss_pred HHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCC
Q 007547 389 ALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPH 468 (599)
Q Consensus 389 ~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~~~ll~~l~p~ 468 (599)
+|+||+||+++|+|++|+.||.||+|+.||++|+.|+|.+|+.+|.+|+....+|++|||++||+++||+.+|++++ |+
T Consensus 341 ~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~l-p~ 419 (645)
T KOG1158|consen 341 ALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLELL-PR 419 (645)
T ss_pred HHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHhC-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCC-CcccCchhHHHhhcCCCCCCCCceEEE--EEeeCCCCcCCCCCCCc
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAP--IFIRPSNFKLPANPSVP 545 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~--i~~~~~~F~Lp~~~~~p 545 (599)
++||+|||||||..+++++|+++.++.+.+++| +.|+|+||+||++++++ +.++ +.++.+.|+||.|+++|
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~------~~~~~~~~~~~s~frlp~dp~~P 493 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPG------EKVPNPVPVGKSMFRLPSDPSTP 493 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCc------cccCcceeecccceecCCCCCCc
Confidence 999999999999999999999999999999986 77889999999999999 5666 77888899999999999
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHhhcCC-CCCCEEEEEeccCCCcccchHHhhcC
Q 007547 546 IIMVGPGTGLAPFRGFLQERMALKQDGA-QLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 546 iImIg~GTGIAPfrsflqer~~~~~~g~-~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
|||||+||||||||||||+|..++++|. ..+.+|||||||+++.||||++||++
T Consensus 494 iIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~ 548 (645)
T KOG1158|consen 494 IIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEE 548 (645)
T ss_pred EEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHH
Confidence 9999999999999999999999877652 22338999999999999999999973
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=1.6e-87 Score=752.79 Aligned_cols=443 Identities=27% Similarity=0.432 Sum_probs=385.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
.+++++|+|||||||||.+|++|++.+.+. |+.+++.++++++.++ |.+++.+||++||||+|+||+|+..|
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~--g~~~~v~~~~d~~~~~------L~~~~~vl~v~ST~G~Ge~Pdna~~F 131 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAA--KLNVNLVNAGDYKFKQ------IAQEKLLIVVTSTQGEGEPPEEAVAL 131 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhC--CCCcEEechHhCCHhH------hccCCeEEEEECCCCCCCCChhHHHH
Confidence 367899999999999999999999999988 8999999999998877 89999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~ 241 (599)
|++|..... ..|.+++|||||||||+|++||.++|.+|++|+++||+|+.+++.+|. +++++|++|.+++|++|.+
T Consensus 132 ~~~L~~~~~--~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~~ 207 (600)
T PRK10953 132 HKFLFSKKA--PKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALKS 207 (600)
T ss_pred HHHHhhCcC--cCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHHh
Confidence 999975421 249999999999999999999999999999999999999999987775 4799999999999999987
Q ss_pred hccCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEe
Q 007547 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (599)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di 321 (599)
...... .+. ..... . . .. .....+|+..+||.|+|+.|++|+.++++|+|+|||||+
T Consensus 208 ~~~~~~------~~~-----~~~~~--~-~-----~~----~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl 264 (600)
T PRK10953 208 RAPAVA------APS-----QSVAT--G-A-----VN----EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDL 264 (600)
T ss_pred hcCCcc------ccc-----ccccc--c-c-----cc----ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEec
Confidence 543211 000 00000 0 0 00 001236788999999999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCcc
Q 007547 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (599)
Q Consensus 322 ~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~ 401 (599)
++++++|+|||||+|||+|+++.|+++|++||+++++.+.+.. .++|++++|++|+||+.+ +
T Consensus 265 ~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~-----------------~~~tl~~~l~~~~dl~~~-~ 326 (600)
T PRK10953 265 GDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG-----------------KTLPLAEALQWHFELTVN-T 326 (600)
T ss_pred CCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-----------------CCCCHHHHHHHhcccCCC-c
Confidence 9999999999999999999999999999999999998887631 267999999999999985 8
Q ss_pred HHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCC
Q 007547 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (599)
Q Consensus 402 k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~ 481 (599)
+.+|+.+|.++.++. |++|. ++++.+.+|.. .++++|||++|| +++++++|++++ |+++||+|||||+|.
T Consensus 327 ~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~ll-~~l~pR~YSIaSsp~ 396 (600)
T PRK10953 327 ANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGLL-RPLTPRLYSIASSQA 396 (600)
T ss_pred HHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHhC-CCCCCeeeecccCCC
Confidence 899999999999864 44443 36677777764 699999999997 689999999999 999999999999998
Q ss_pred CCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCC-CCcCCCCCCCcEEEEeCCCChHHHH
Q 007547 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFR 559 (599)
Q Consensus 482 ~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~-~F~Lp~~~~~piImIg~GTGIAPfr 559 (599)
..++++||+|+++++.. .|+.+.|+||+||.+ +++| +.|+|+++++ .|++|.++++||||||+||||||||
T Consensus 397 ~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfr 469 (600)
T PRK10953 397 EVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEE------GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFR 469 (600)
T ss_pred CCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCC------CEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHH
Confidence 77899999999999874 688899999999996 8888 8999999886 8999998899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 560 GFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 560 sflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||||+|... + ..+++|||||||++..||+|++||+
T Consensus 470 sflq~r~~~---~-~~~~~~LffG~R~~~~D~lY~~El~ 504 (600)
T PRK10953 470 AFMQQRAAD---G-APGKNWLFFGNPHFTEDFLYQVEWQ 504 (600)
T ss_pred HHHHHHHHc---C-CCCCeEEEeeccCCccchhHHHHHH
Confidence 999999873 3 4589999999999878999999997
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.6e-86 Score=747.91 Aligned_cols=442 Identities=31% Similarity=0.529 Sum_probs=388.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
.++|+|+|||||||||.+|+.|++.+.++ |+.+++.+|++++.++ +.+++.+||++||||+|+||+||..|+
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~--g~~~~v~~~~d~~~~~------l~~~~~li~v~ST~GeGe~Pdna~~F~ 129 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAA--GFSVRLSSADDYKFKQ------LKKERLLLLVISTQGEGEPPEEAISFH 129 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhC--CCccEEechHHCCHhh------cccCceEEEEeCCCCCCcCCHHHHHHH
Confidence 67899999999999999999999999988 8999999999999887 899999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHHh
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~ 242 (599)
++|..... ..|++++||||||||++|++||.++|.++++|+++||+++.+++.+|. +.+++|++|.+++|+.|.+.
T Consensus 130 ~~L~~~~~--~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~ 205 (597)
T TIGR01931 130 KFLHSKKA--PKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQ 205 (597)
T ss_pred HHHHhCCC--cccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhh
Confidence 99986431 248999999999999999999999999999999999999999998886 47899999999999999875
Q ss_pred ccCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEec
Q 007547 243 LRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVS 322 (599)
Q Consensus 243 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~ 322 (599)
...... .|. +.+. +.. ......+|+..+||.|+|+.|++|+..+++|+|+||||+++
T Consensus 206 ~~~~~~-----~~~------~~~~---~~~---------~~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~ 262 (597)
T TIGR01931 206 AKGSAS-----TPS------LSET---PAR---------SQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLE 262 (597)
T ss_pred ccCccC-----CCc------ceec---ccc---------cccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecC
Confidence 421110 110 1110 000 00123457789999999999999999999999999999999
Q ss_pred CCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccH
Q 007547 323 GTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRK 402 (599)
Q Consensus 323 ~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k 402 (599)
+++++|+|||||+|||+|++++|+++|++||+++++.+++. +.++|++++|++|+||+. ++|
T Consensus 263 ~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----------------~~~~tl~~~l~~~~dl~~-~~~ 324 (597)
T TIGR01931 263 GSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----------------GKTIPLFEALITHFELTQ-NTK 324 (597)
T ss_pred CCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----------------CCCcCHHHHHHhceeCCC-CCH
Confidence 99999999999999999999999999999999999888763 126899999999999998 589
Q ss_pred HHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC
Q 007547 403 AALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF 482 (599)
Q Consensus 403 ~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~ 482 (599)
.+|+.||++|+|++.++.| ++++.|.+|+. .++++|||.+|| +++++++|++++ |+++||+|||||+|..
T Consensus 325 ~~l~~la~~~~~~~l~~~~------~~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~ll-~~~~~R~YSIaSsp~~ 394 (597)
T TIGR01931 325 PLLKAYAELTGNKELKALI------ADNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISLL-RPLTPRLYSISSSQSE 394 (597)
T ss_pred HHHHHHHHhcCCHHHHHHh------cCHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHhC-cccCCceeeeccCccc
Confidence 9999999999998655433 26778888885 789999999999 899999999999 9999999999999987
Q ss_pred CCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCC-CCcCCCCCCCcEEEEeCCCChHHHHH
Q 007547 483 APDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRG 560 (599)
Q Consensus 483 ~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~-~F~Lp~~~~~piImIg~GTGIAPfrs 560 (599)
.+++++|+|+++++.. .|+.+.|+||+||++ +++| ++|+|+++++ .|++|.++.+||||||+|||||||||
T Consensus 395 ~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrs 467 (597)
T TIGR01931 395 VGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKEG------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRA 467 (597)
T ss_pred CCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCCC------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHH
Confidence 7899999999998874 688899999999998 9998 8999999776 89999888899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 561 FLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 561 flqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|..+ + ..++++||||||++.+|++|++||+
T Consensus 468 flq~r~~~---~-~~g~~~LffG~R~~~~D~ly~~El~ 501 (597)
T TIGR01931 468 FMQERAED---G-AKGKNWLFFGNPHFTTDFLYQVEWQ 501 (597)
T ss_pred HHHHHHHc---c-CCCCEEEEECCCCCCcchhHHHHHH
Confidence 99999873 3 4589999999999666999999996
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-82 Score=701.72 Aligned_cols=446 Identities=36% Similarity=0.602 Sum_probs=397.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
....++|+||||||||+.+|+.+++++... |+.+.+.++++++..+ +.....++|+++|+|+|++|+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~--g~~~~~~~~~~~~~~~------~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAA--GLQVLVASLDDYKPKD------IAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhc--CCceeecchhhcChhh------HHhhhceEEEEccccCCCCCCchHHH
Confidence 578899999999999999999999999988 7889999999999888 55557899999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~ 241 (599)
++++.... ...|.+++|+||||||++|+.||.++|.++++|.++||+++.+++++|.. +.++....|.+.+++.+..
T Consensus 118 ~~~l~~~~--a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGKK--APKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhcccc--cccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 99998742 24599999999999999999999999999999999999999999999987 7899999999999999887
Q ss_pred hccCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEe
Q 007547 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (599)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di 321 (599)
.......... .++. . +. ..+++....|+.+.+..|++|+..+++|+|+|++||+
T Consensus 195 ~~~~~~~~~~--~~~~-----~------~~-------------~~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAAPA--QVAT-----S------PQ-------------SESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccccc--cccc-----h------hc-------------ccccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 5532211100 0000 0 00 0234556788999999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCcc
Q 007547 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (599)
Q Consensus 322 ~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~ 401 (599)
++++++|+|||+++|||+|+++.|+++|..|||++++.+.++ +.+.++.++|++|+|++..|
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----------------~~~~~~~~~l~~~~e~~~~~- 310 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----------------GETLPLVEALKSHFEFTSAP- 310 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------CCcchHHHHHHHheecccch-
Confidence 999999999999999999999999999999999998666331 34889999999999999999
Q ss_pred HHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCC
Q 007547 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (599)
Q Consensus 402 k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~ 481 (599)
|+++..|+.|+.+++.++.|+.|+ ...++.|.. +++++|+|.+||++++|+++|++.+ |+++||+|||||++.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~l-~~lkPR~YSIsSs~~ 383 (587)
T COG0369 311 KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDLL-PPLKPRLYSIASSPG 383 (587)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHhC-ccCCCeeeEeccCCC
Confidence 999999999999999999999985 556666666 8999999999999999999999999 999999999999999
Q ss_pred CCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCC-CCcCCCCCCCcEEEEeCCCChHHHHH
Q 007547 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRG 560 (599)
Q Consensus 482 ~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~-~F~Lp~~~~~piImIg~GTGIAPfrs 560 (599)
.+++++||||++|+|..+ ++.|.|+||+||+++...+ +.++|+++++ +|+||.++++||||||+|||||||||
T Consensus 384 ~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g-----~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRa 457 (587)
T COG0369 384 VSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEG-----DTIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRA 457 (587)
T ss_pred CCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCC-----CeEEEEeccCCccccCCCCCCceEEEcCCCCchhHHH
Confidence 999999999999999987 5689999999999988732 8999999998 99999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 561 FLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 561 flqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
|+|+|... + ..|++|||||||+.++||||++||++
T Consensus 458 fvq~r~~~---~-~~gk~wLfFG~R~~~~DfLY~~Ewe~ 492 (587)
T COG0369 458 FVQERAAN---G-AEGKNWLFFGCRHFTEDFLYQEEWEE 492 (587)
T ss_pred HHHHHHhc---c-ccCceEEEecCCCCccchhhHHHHHH
Confidence 99999984 3 45699999999998889999999973
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=2e-63 Score=539.65 Aligned_cols=300 Identities=51% Similarity=0.882 Sum_probs=273.3
Q ss_pred CCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC-CccEEEEecCCCCC
Q 007547 291 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS-LELLFSLHTDNEDG 369 (599)
Q Consensus 291 ~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~-~d~~~~l~~~~~~~ 369 (599)
..+||.|+|++|++|+.+ ++|+++||+||+++++++|+|||||+|||+|+++.|+++|++||++ ++++|.+....+.
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~- 79 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEP- 79 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCcc-
Confidence 468999999999999998 8899999999999889999999999999999999999999999999 8999988765531
Q ss_pred CCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHh
Q 007547 370 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 449 (599)
Q Consensus 370 ~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~ 449 (599)
.+.+.|||.|+|++++|++|+||+++|+|.+|+.||.||+|+++|++|++|+| +|+++|.+|+.++++|++|||+
T Consensus 80 ----~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 80 ----ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ----cccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 13467899999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred hCCCCC---CChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCC------
Q 007547 450 EFPSAT---PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEG------ 520 (599)
Q Consensus 450 ~fps~~---~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~------ 520 (599)
+||+++ +|++.|++.+ |+++||+|||||+|..++++++|||+++.++++.|+.+.|+||+||+++.++..
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999999 999999999999998889999999999999999999999999999999873100
Q ss_pred ---------CCCceEEEEEeeCCCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCccc
Q 007547 521 ---------NGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVR 591 (599)
Q Consensus 521 ---------~~~~~~v~i~~~~~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ 591 (599)
...++.|++++++|.|.+|.++.+|+||||+||||||||||||+|....+++...++++||||||+++.|+
T Consensus 234 ~~~~~~~~~~~~g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ 313 (416)
T cd06204 234 PYYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDF 313 (416)
T ss_pred ccccccccccCCCCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCccc
Confidence 00128999999999999998888999999999999999999999986544443468999999999995699
Q ss_pred chHHhhc
Q 007547 592 IFCYLLQ 598 (599)
Q Consensus 592 ly~~El~ 598 (599)
+|++||+
T Consensus 314 ly~~el~ 320 (416)
T cd06204 314 IYKDELE 320 (416)
T ss_pred chHHHHH
Confidence 9999986
No 7
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.3e-61 Score=518.83 Aligned_cols=284 Identities=42% Similarity=0.743 Sum_probs=264.5
Q ss_pred EEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCC
Q 007547 299 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 378 (599)
Q Consensus 299 V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~~ 378 (599)
|++|++|+.++++|+|+||+|++++++++|+|||||+|||+|+++.|++++++||+++++++.++..+. .+...
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~------~~~~~ 75 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQ------QRGKP 75 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccc------cccCC
Confidence 678999999999999999999998889999999999999999999999999999999999998876441 13466
Q ss_pred CCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCCCCCCCh
Q 007547 379 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPI 458 (599)
Q Consensus 379 pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~ 458 (599)
|||.|+|++++|++|+||+++|+|++|+.||.||+|+++|++|.+|++.++.+.|.++ ++++++|+|++||++++|+
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~ 152 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL 152 (382)
T ss_pred CCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence 8999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcC
Q 007547 459 GVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL 538 (599)
Q Consensus 459 ~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~L 538 (599)
+.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++++| +.|.|.+|.|.|++
T Consensus 153 ~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~~p~g~F~l 225 (382)
T cd06207 153 EQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG------QRVTVFIKKSSFKL 225 (382)
T ss_pred HHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCC------CEEEEEEECCcccC
Confidence 9999999 9999999999999987789999999999999888888999999999999999 89999999999999
Q ss_pred CCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 539 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 539 p~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.++++|+||||+||||||||||||+|..+.+++...++++||||||+++.|++|++||+
T Consensus 226 p~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~ 285 (382)
T cd06207 226 PKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELE 285 (382)
T ss_pred CCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHH
Confidence 988889999999999999999999999875444446789999999999956999999986
No 8
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=9.6e-61 Score=516.14 Aligned_cols=286 Identities=36% Similarity=0.626 Sum_probs=258.1
Q ss_pred EEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CccEEEEecCCCCCCCCCCCC
Q 007547 299 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRGSSL 376 (599)
Q Consensus 299 V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~--~d~~~~l~~~~~~~~~~~~~~ 376 (599)
|.++++||.++++++|+||+||+++++++|+|||||+|||+|++++|++++++||++ +|+++.++....... .+...
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKK-KNAKV 80 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccc-ccccc
Confidence 678999999999999999999998889999999999999999999999999999999 789888875322111 01246
Q ss_pred CCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCCCCCC
Q 007547 377 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 456 (599)
Q Consensus 377 ~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~ 456 (599)
+.+||.|+|++++|++|+||+++|+|++|+.||+||+|+++|++|++|++.+|+++|.+|+.++++|++|||++||++++
T Consensus 81 ~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~ 160 (398)
T cd06203 81 PVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP 160 (398)
T ss_pred CCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcC-----CCCCCCCceEEEEEe
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI-----PLEGNGDCSWAPIFI 531 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~-----~g~~~~~~~~v~i~~ 531 (599)
|++.+++.+ |+++||+|||||+|..+++.++|+|+++.+++ .|+||+||+++. +| +.|.+.+
T Consensus 161 pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G------~~v~i~~ 227 (398)
T cd06203 161 PLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHG------VKVPFYL 227 (398)
T ss_pred CHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCC------CEEEEEE
Confidence 999999999 99999999999999877899999999987644 699999999988 77 8999999
Q ss_pred eC-CCCcCCCC-CCCcEEEEeCCCChHHHHHHHHHHHHHhh--cCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 532 RP-SNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQ--DGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 532 ~~-~~F~Lp~~-~~~piImIg~GTGIAPfrsflqer~~~~~--~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
++ |.|.+|.+ +++|+||||+||||||||||||+|....+ ++...++++||||||+++.|++|++||+
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~ 298 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELE 298 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHH
Confidence 65 58999987 67999999999999999999999987432 1235689999999999966999999986
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=2.1e-60 Score=514.57 Aligned_cols=291 Identities=41% Similarity=0.718 Sum_probs=258.0
Q ss_pred EEEeeeecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CccEEEEecCCCCCCCCC--
Q 007547 299 VAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRG-- 373 (599)
Q Consensus 299 V~~~~~L~~~~~~r~~~hle~di~~-~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~--~d~~~~l~~~~~~~~~~~-- 373 (599)
|+.+++|+++++.|+|+||+||+++ ++++|+|||||+|||+|+++.|++++++||+. .++.+.++...+.....+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 6789999999999999999999997 68999999999999999999999999999985 478888875544221111
Q ss_pred -CCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCC
Q 007547 374 -SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP 452 (599)
Q Consensus 374 -~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fp 452 (599)
.....++|.|+|++++|++|+||+++|+|++|+.||.||+|+++|++|+.|++ |+++|.+|+..+++|++|+|++||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 11234667799999999999999999999999999999999999999999975 888999999999999999999999
Q ss_pred CCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCC--CCcccCchhHHHhhcCCCCCCCCceEEEEE
Q 007547 453 SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (599)
Q Consensus 453 s~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~--g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~ 530 (599)
++++|++.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++. |+.+.|+||+||+++++| +.|.|+
T Consensus 160 s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPG------DTVPCF 232 (406)
T ss_pred cCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCC------CEEEEE
Confidence 9999999999999 9999999999999987789999999999887654 457899999999999999 899999
Q ss_pred eeCC-CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhh----cCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 531 IRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----DGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 531 ~~~~-~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~----~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
++.+ .|++|.++.+|+||||+||||||||||||+|..+.+ .+...++++||||||+++.|++|++||+
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~ 305 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETE 305 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHH
Confidence 8765 899998888999999999999999999999975421 2235689999999999966999999986
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=1.4e-58 Score=497.63 Aligned_cols=282 Identities=34% Similarity=0.597 Sum_probs=256.4
Q ss_pred EEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 007547 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 377 (599)
Q Consensus 298 ~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~ 377 (599)
+|+.|++|++++++|+|+||+|++++ +++|+|||||+|||+|+++.|+++|++||+++++.|+++.... ..+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~-------~~~ 72 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS-------ATG 72 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC-------CCC
Confidence 47889999999999999999999976 8999999999999999999999999999999999998886432 346
Q ss_pred CCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCCCCCCC
Q 007547 378 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 457 (599)
Q Consensus 378 ~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p 457 (599)
.|+|.|+|++++|++|+||+++|+|+||+.||.||+|+++|++|..++ ++.|.+++..+++|++|+|++||++++|
T Consensus 73 ~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 73 LPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 688999999999999999999999999999999999999999999883 5679999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCC-CcccCchhHHHhhcCCCCCCCCceEEEEEe--eCC
Q 007547 458 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIFI--RPS 534 (599)
Q Consensus 458 ~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~--~~~ 534 (599)
+++|++++ |+++||+|||||+|..+++.++|+|+++.++++.| +.+.|+||+||.++++| +.|.+.+ +.|
T Consensus 149 ~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~i~~p~g 221 (384)
T cd06206 149 LATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPG------DSIHVSVRPSHS 221 (384)
T ss_pred HHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCC------CeEEEEEecCCC
Confidence 99999999 99999999999999877889999999998887665 56799999999999999 8898764 457
Q ss_pred CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 ~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.|.+|.+..+|+||||+||||||||||++++.....++...++++||||||+++.|++|++||+
T Consensus 222 ~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~ 285 (384)
T cd06206 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELE 285 (384)
T ss_pred ccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHH
Confidence 9999988789999999999999999999999875444445689999999999956999999986
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=5.7e-54 Score=457.89 Aligned_cols=260 Identities=38% Similarity=0.566 Sum_probs=233.0
Q ss_pred EEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCC
Q 007547 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 377 (599)
Q Consensus 298 ~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~ 377 (599)
+|++|++|++++++|+++||+||+++++++|+|||||+|+|+|+++.|++++++||+++++.+.
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~---------------- 64 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVS---------------- 64 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEe----------------
Confidence 4678999999999999999999999889999999999999999999999999999999987763
Q ss_pred CCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCC--CCC
Q 007547 378 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP--SAT 455 (599)
Q Consensus 378 ~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fp--s~~ 455 (599)
.++|.|+|++++|++|+||+++ .++.|+.||+|+.++++|+. +|+++|.+ ++|++|+|++|| +++
T Consensus 65 ~~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 65 TVGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred CCCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 1356799999999999999997 45558899999988888775 68887764 589999999999 999
Q ss_pred CChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhc-CCCCCCCCceEEEEEeeCC
Q 007547 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPS 534 (599)
Q Consensus 456 ~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~v~i~~~~~ 534 (599)
+|+++|++++ |+++||+|||||+|..+++.++|+|+++++.+. ++.+.|+||+||+++ ++| +.|.|+++++
T Consensus 132 ~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~G------d~v~v~~~~~ 203 (360)
T cd06199 132 LTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEG------DTVPVFVQPN 203 (360)
T ss_pred CCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCC------CEEEEEEecC
Confidence 9999999999 999999999999998778999999999987763 567899999999996 478 8999999776
Q ss_pred -CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 -NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 -~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.|+||.++.+|+||||+||||||||||||++... + ..++++||||||++..|++|++||+
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~D~~y~~el~ 264 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---G-AKGKNWLFFGERHFATDFLYQDELQ 264 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c-CCCcEEEEEcCCCCccchhHHHHHH
Confidence 8999988889999999999999999999999863 2 4589999999999866999999996
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=1.8e-53 Score=469.11 Aligned_cols=273 Identities=34% Similarity=0.547 Sum_probs=241.2
Q ss_pred CCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecC
Q 007547 286 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 365 (599)
Q Consensus 286 ~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~ 365 (599)
...|+..+||.|+|++|++|++++++|+++||+||+++++++|+|||||+|||+|++++|++++++||++++.++
T Consensus 160 ~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~----- 234 (530)
T PRK06214 160 PLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI----- 234 (530)
T ss_pred CCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-----
Confidence 345788999999999999999999999999999999988999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHH
Q 007547 366 NEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLL 445 (599)
Q Consensus 366 ~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~ 445 (599)
.++|++++|++|+||+++| +.+|+.|+.++++++ |++|+.|++.++.+.. ....+++
T Consensus 235 ----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vl 291 (530)
T PRK06214 235 ----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVL 291 (530)
T ss_pred ----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHH
Confidence 2689999999999999965 889999999998876 8888888654433321 2356899
Q ss_pred HHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCc
Q 007547 446 EVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDC 524 (599)
Q Consensus 446 dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~ 524 (599)
|+|++||++++|++++++.+ |+++||+|||||+|..++++++|+|+++++.. .++.+.|+||+||+ ++++|
T Consensus 292 dvL~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~G------ 363 (530)
T PRK06214 292 AALEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPG------ 363 (530)
T ss_pred HHHHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCC------
Confidence 99999999999999999999 99999999999999877899999999998874 57788999999998 58888
Q ss_pred eEEEEEeeCC-CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 525 SWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 525 ~~v~i~~~~~-~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.|.|+++.+ .|++|.++++|+||||+||||||||||||+|.... ..++++||||||+...|++|++||+
T Consensus 364 d~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~----~~g~~~LffG~R~~~~D~ly~dEL~ 434 (530)
T PRK06214 364 TRVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATK----APGRNWLFFGHQRSATDFFYEDELN 434 (530)
T ss_pred CEEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc----CCCCeEEEEEecCChhhhHHHHHHH
Confidence 8999998654 59999888899999999999999999999998632 3578999999998777999999996
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=1.8e-51 Score=409.87 Aligned_cols=218 Identities=44% Similarity=0.783 Sum_probs=190.6
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~ 367 (599)
||+.++||.|+|+++++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.|.++...+
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHH
Q 007547 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (599)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dv 447 (599)
. .....|||.|+|++++|++|+||+++|+|+||+.||.||+|+++|++|++|++.+|++.|.+|+..+++|++|+
T Consensus 82 ~-----~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~di 156 (219)
T PF00667_consen 82 N-----NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDI 156 (219)
T ss_dssp T-----SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHH
T ss_pred c-----cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHH
Confidence 3 14577999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHH
Q 007547 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW 511 (599)
Q Consensus 448 L~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~ 511 (599)
|.+||++++|++.|++++ |+++||+|||||||..++++++|||++++++++.|+.|.|+||+|
T Consensus 157 l~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 157 LEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999 999999999999999999999999999999999999999999998
No 14
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=2.4e-33 Score=262.02 Aligned_cols=144 Identities=25% Similarity=0.320 Sum_probs=130.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|++|+|+|||||||||.+|++|++.+.++ |+.++++++.+ .++ +.+++++||++||||+|++|+|+..|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~--g~~~~~~~~~~--~~~------l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEA--GFSTETLHGPL--LDD------LSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHc--CCceEEeccCC--HHH------hccCCeEEEEECCCCCCCCChhHHHHH
Confidence 46899999999999999999999999988 88888887654 344 888999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L 239 (599)
++|+....+ +++++|+||||||++|++||.+++.++++|+++||+++.+++++|++. ..|++|++|.+.+|..|
T Consensus 71 ~~L~~~~~~---l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQKPD---LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhcCCC---CCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999875433 999999999999999999999999999999999999999999999875 46899999999988754
No 15
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=6.1e-33 Score=260.17 Aligned_cols=145 Identities=23% Similarity=0.357 Sum_probs=130.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|+++.|+|||||||||.+|++|++.+.+. |+.+.++++++++... +.+++.+||++||||+|++|+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~--g~~~~~~~~~~~~~~~------~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQ--GHEVTLFEDPELSDWQ------PYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhC--CCceEEechhhCCchh------cccCCeEEEEECCCCCCCCChhHHHHH
Confidence 46899999999999999999999999987 8999999988765432 456789999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L 239 (599)
++|++... .+++++|+|||||||+|++||.+++.++++|+++||+++.+++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~~~---~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDTAG---YQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhcCc---ccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 99987532 3999999999999999999999999999999999999999999999876 589999999998 7654
No 16
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=1.3e-32 Score=258.25 Aligned_cols=145 Identities=23% Similarity=0.263 Sum_probs=126.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhcc--CCeEEEEeecCCCCCCChhHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK--ETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~--~~~vif~~sTyG~G~~p~na~~F 161 (599)
++|.|+|||||||||.+|++|++.+.+. |+.+.++. ..+..+ +.. .+.+||++||||+|++|+|+..|
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~--g~~~~~~~--~~~~~~------~~~~~~~~li~~~sT~G~Ge~Pd~~~~f 70 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAA--GFEAWHNP--RASLQD------LQAFAPEALLAVTSTTGMGELPDNLMPL 70 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHC--CCceeecC--cCCHhH------HHhCCCCeEEEEECCCCCCCCchhHHHH
Confidence 5899999999999999999999999877 77665543 233333 333 37899999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~ 238 (599)
+++|++... ..|++++|||||||||+| ++||.+++.++++|+++||+|+++++++|++. +.|++|.+|++.+|++
T Consensus 71 ~~~L~~~~~--~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~ 148 (151)
T PRK05723 71 YSAIRDQLP--AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAA 148 (151)
T ss_pred HHHHHhcCc--cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHH
Confidence 999986422 149999999999999999 89999999999999999999999999999884 6899999999999988
Q ss_pred HH
Q 007547 239 LD 240 (599)
Q Consensus 239 L~ 240 (599)
|.
T Consensus 149 l~ 150 (151)
T PRK05723 149 LK 150 (151)
T ss_pred hc
Confidence 74
No 17
>PRK07308 flavodoxin; Validated
Probab=99.94 E-value=2.6e-26 Score=214.62 Aligned_cols=141 Identities=22% Similarity=0.307 Sum_probs=126.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|+++.|+|+|+|||||++|+.|++.+.+. |+.++++++++.+.++ +.+++.+||++||||+|++|+++..|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~--g~~~~~~~~~~~~~~~------l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLREL--GHDVDVDECTTVDASD------FEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhC--CCceEEEecccCCHhH------hccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 45799999999999999999999999877 8889999999887766 888999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVW 236 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~ 236 (599)
++|.+.. +++++++|||+||+.|+|||.+++.++++|+++|++++.+..+.+..+ +..+.+.+|.+.|.
T Consensus 73 ~~l~~~~-----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 143 (146)
T PRK07308 73 EDLADLD-----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEELA 143 (146)
T ss_pred HHHhcCC-----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9998754 889999999999999999999999999999999999999988888765 34556667776653
No 18
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.94 E-value=4.5e-27 Score=218.37 Aligned_cols=138 Identities=39% Similarity=0.620 Sum_probs=121.8
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHH-HHHHHHh
Q 007547 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA-RFYKWFT 166 (599)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~-~F~~~L~ 166 (599)
|+|+|+|||||++|+.|+++|.++ |+.++++++++++.. ..++..++.+||++||||+|++|+++. .|.+++.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~--g~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRER--GVEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHT--TSEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHc--CCceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 899999999999999999999988 899999999999853 222889999999999999999999988 5666665
Q ss_pred cCC--CCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHH
Q 007547 167 EGN--DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAW 231 (599)
Q Consensus 167 ~~~--~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W 231 (599)
... .....+++++|+|||+||+.|..||.++|.++++|+++|++++.+++++|+.+ +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 321 01134899999999999999988999999999999999999999999999988 789999999
No 19
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.94 E-value=4.1e-26 Score=242.51 Aligned_cols=182 Identities=27% Similarity=0.415 Sum_probs=150.5
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~ 367 (599)
.|...+||.++|+.|.+|+.++....++||+|+.++ .+.|++|.++.|.|+...
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~------------------------- 137 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID------------------------- 137 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC-------------------------
Confidence 477899999999999999998887899999999765 799999999999664210
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHH
Q 007547 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (599)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dv 447 (599)
.+|
T Consensus 138 -----------------------------------------------------------~~g------------------ 140 (367)
T PLN03115 138 -----------------------------------------------------------KNG------------------ 140 (367)
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 001
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC---CCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCc
Q 007547 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 524 (599)
Q Consensus 448 L~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~---~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (599)
.+..+|+|||||+|.. .+++++|+|+.+.|...+|+...|+||+||+++++|
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~G------ 195 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 195 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCc------
Confidence 2246799999999843 257899999998887777888899999999999999
Q ss_pred eEEEEEeeCCCC-cCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcC-CCCCCEEEEEeccCCCcccchHHhhc
Q 007547 525 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 525 ~~v~i~~~~~~F-~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g-~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.|.|.+|.|.| .+|.++.+|+||||+|||||||||||+++....... ...++++||||||+.+ |++|++||+
T Consensus 196 d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe 270 (367)
T PLN03115 196 AEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFE 270 (367)
T ss_pred CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHH
Confidence 899999999965 556677789999999999999999999886532111 1247899999999987 999999986
No 20
>PRK06703 flavodoxin; Provisional
Probab=99.92 E-value=2.6e-24 Score=202.21 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=130.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
+++++|+|+|+||||+++|+.|++++.+. |+.++++++++.+..+ +.+++.+||++||||+|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAF--DHEVVLQEMDGMDAEE------LLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhc--CCceEEEehhhCCHHH------HhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 46899999999999999999999999877 8889999999887665 889999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC---CcHHHHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~---~~e~~~~~W~~~l~~~L 239 (599)
+++.... +++++++|||+||++|++||.+++.++++|+++|++++.+....+..+ +..+.+.+|.+++.+.+
T Consensus 73 ~~l~~~~-----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENID-----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcCC-----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 9998654 789999999999999999999999999999999999998888777665 34567788998887766
Q ss_pred HH
Q 007547 240 DQ 241 (599)
Q Consensus 240 ~~ 241 (599)
++
T Consensus 148 ~~ 149 (151)
T PRK06703 148 AQ 149 (151)
T ss_pred Hh
Confidence 54
No 21
>PRK12359 flavodoxin FldB; Provisional
Probab=99.90 E-value=6.3e-23 Score=196.19 Aligned_cols=143 Identities=21% Similarity=0.344 Sum_probs=123.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
|++.|+|+|+|||||.+|++|++.+. ...+++.++++++.++ +..++.+||++||||.|++|+++..|++
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg----~~~v~v~~i~~~~~~~------l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIG----EELVDLHNLKDDPPKL------MEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhC----CCeEEEEEcccCChhH------HccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 58999999999999999999999874 2247889999998877 8899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCc-ch-hHHHHHHHHHHHHHHHCCCeEEecc---------------------eee-c
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL---------------------GLG-D 219 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~i~~~---------------------g~~-D 219 (599)
.|.... |+|+++|+||+||+ .| ++||.+++.+.++|++.||+.+... |+. |
T Consensus 71 ~l~~~d-----l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDLN-----LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhCC-----CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 998765 99999999999998 58 9999999999999999999887653 222 4
Q ss_pred CCC---CcHHHHHHHHHHHHHHHHH
Q 007547 220 DDQ---CIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 220 ~~~---~~e~~~~~W~~~l~~~L~~ 241 (599)
+++ -.++++++|.+++.+.+..
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~ 170 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAE 170 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHh
Confidence 333 3689999999998877654
No 22
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.89 E-value=2.2e-22 Score=206.55 Aligned_cols=123 Identities=54% Similarity=0.952 Sum_probs=106.8
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCC-CCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~-~F~Lp~~~~~piIm 548 (599)
.+|+|||+|+|...++.++|+|+.+.++...+..+.|.+|+||+++++| +.+.+.+|.| .|.++.+..+|+||
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~G------d~v~v~~p~G~~f~l~~~~~~~~vl 120 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLG------AKVTVFIRPAPSFRLPKDPTTPIIM 120 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCC------CEEEEEEecCCcccCCCCCCCCEEE
Confidence 4689999999865568999999998877666777889999999999999 8999999999 99999877799999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+|||||||++++++++....++...++++||||+|+.+.|++|++||+
T Consensus 121 IAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~ 170 (267)
T cd06182 121 VGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQ 170 (267)
T ss_pred EecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHH
Confidence 99999999999999999864322324679999999999934999999985
No 23
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.89 E-value=3.4e-22 Score=216.75 Aligned_cols=180 Identities=23% Similarity=0.369 Sum_probs=146.4
Q ss_pred CCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 007547 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (599)
Q Consensus 289 ~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~ 368 (599)
|...+|+.|+|+.+++|+..+....++||.|+.++..+.|+||.++.|.++...
T Consensus 137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~-------------------------- 190 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD-------------------------- 190 (411)
T ss_pred ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC--------------------------
Confidence 678899999999999999766667999999998766789999999998543210
Q ss_pred CCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHH
Q 007547 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (599)
Q Consensus 369 ~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL 448 (599)
.+|
T Consensus 191 ----------------------------------------------------------~~g------------------- 193 (411)
T TIGR03224 191 ----------------------------------------------------------ASG------------------- 193 (411)
T ss_pred ----------------------------------------------------------cCC-------------------
Confidence 001
Q ss_pred hhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCC---CCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCce
Q 007547 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCS 525 (599)
Q Consensus 449 ~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~---~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~ 525 (599)
.+..+|+|||+|++... .+.++|+|+++.. ...|+.+.|++|+||+++++| +
T Consensus 194 ------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~G------d 248 (411)
T TIGR03224 194 ------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKG------D 248 (411)
T ss_pred ------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCc------C
Confidence 12357999999987321 2479999998863 345777889999999999999 8
Q ss_pred EEEEEeeCCC-CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 526 WAPIFIRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 526 ~v~i~~~~~~-F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|.|.+|.|. |.+|..+.+|+||||+||||||||||++++......+ ..++++||||+|+.+ |++|.+||+
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~ 320 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQ 320 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHH
Confidence 9999999995 7777666789999999999999999999987643333 468999999999998 999999985
No 24
>PRK06756 flavodoxin; Provisional
Probab=99.89 E-value=3.8e-22 Score=186.82 Aligned_cols=142 Identities=20% Similarity=0.284 Sum_probs=120.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
+++++|+|+|+|||||++|+.|++++.+. |+.++++++.+... ..++.+++.+||++||||+|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~--g~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRET--ENEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhc--CCeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 46899999999999999999999999877 88899999876532 123789999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHH---HHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDF---TAWRELVWP 237 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~---~~W~~~l~~ 237 (599)
+.+.... ++++++++||+|++.|+|||.+.+.+.+.|++.|++.+.+.......+ .++++ .+|.+.+.+
T Consensus 74 ~~l~~~~-----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p-~~~d~~~~~~~~~~~~~ 145 (148)
T PRK06756 74 DAMDSID-----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTP-EDEDVEKCLQFGAEFVK 145 (148)
T ss_pred HHHhcCC-----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCC-CHHHHHHHHHHHHHHHH
Confidence 9987654 889999999999999999999999999999999999999877776554 24455 455555543
No 25
>PRK09271 flavodoxin; Provisional
Probab=99.88 E-value=3.6e-22 Score=189.61 Aligned_cols=143 Identities=16% Similarity=0.186 Sum_probs=119.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
|+++|+|+|+|||||++|+.|++.|.+. |+.+++.++++.+.++ +..++.+++.+||++||||+|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEA--GHEVDWVETDVQTLAE--YPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhC--CCeeEEEecccccccc--cccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 5899999999999999999999999988 8888888888776543 23336688999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCC---CcHHHHHHHHHHHHHH
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELVWPE 238 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~---~~e~~~~~W~~~l~~~ 238 (599)
+|.... .++++++|||+||+.| ++||.+++.++++|++. .+..+.+..+ .+.+.+.+|.+++++.
T Consensus 77 ~l~~~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAETI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHHh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHHHHHHHH
Confidence 998743 4688999999999999 79999999999999754 2444555433 2358899999998888
Q ss_pred HH
Q 007547 239 LD 240 (599)
Q Consensus 239 L~ 240 (599)
+.
T Consensus 147 ~~ 148 (160)
T PRK09271 147 CK 148 (160)
T ss_pred hh
Confidence 73
No 26
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=219.53 Aligned_cols=187 Identities=18% Similarity=0.159 Sum_probs=157.2
Q ss_pred chHHHHHHhhcccCCCCcchhhhHHHHHHHHHHhhheeeeeccCCCCcCCCCCCCCCCCCCCcchhhHHHHh-----cCC
Q 007547 9 LVKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIA-----AGK 83 (599)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 83 (599)
..++|.++|+++..+ ++++.+|||+ ||. +||++.. +++..|. ..+
T Consensus 198 ~~~~v~~~l~~l~~~--~l~~~~i~p~-HG~-------i~~~~~~--------------------~~~~~Y~~~~~~~~~ 247 (394)
T PRK11921 198 FSPLVIKKIEEILSL--NLPVDMICPS-HGV-------IWRDNPL--------------------QIVEKYLEWAANYQE 247 (394)
T ss_pred hHHHHHHHHHHHHhc--CCCCCEEEcC-Ccc-------EEeCCHH--------------------HHHHHHHHHhhcCCc
Confidence 456789999999976 7789999999 999 8998753 3444443 257
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHH--hhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIK--ARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~--~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
++|+|+|+|+|||||++|+.|++++. +. |++++++++.+.+.++ ++.++.+++.+||++||||.|.+| .+..|
T Consensus 248 ~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~--g~~v~~~~~~~~~~~~--i~~~~~~~d~ii~GspT~~~~~~~-~~~~~ 322 (394)
T PRK11921 248 NQVTILYDTMWNSTRRMAEAIAEGIKKANK--DVTVKLYNSAKSDKND--IITEVFKSKAILVGSSTINRGILS-STAAI 322 (394)
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHhhcCC--CCeEEEEECCCCCHHH--HHHHHHhCCEEEEECCCcCccccH-HHHHH
Confidence 88999999999999999999999998 55 7899999999988766 667778899999999999888885 48899
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L 239 (599)
++++.... ++||++++|| +|+|+|.+.+.+.++|+++|++.+.+.......+ ...+.+++|.+++.+.|
T Consensus 323 l~~l~~~~-----~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 323 LEEIKGLG-----FKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred HHHhhccC-----cCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHhh
Confidence 99998865 8999999999 6999999999999999999999998776666554 34566788888776543
No 27
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.87 E-value=5.5e-21 Score=200.10 Aligned_cols=183 Identities=25% Similarity=0.371 Sum_probs=141.2
Q ss_pred CCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 007547 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (599)
Q Consensus 289 ~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~ 368 (599)
|....|+.++|+..+.++.|.+..++++|.|+.+. .+.|++|.++.|.++.... .
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-~~~f~aGQy~~l~~~~~~~-----------------------~- 73 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGTNP-----------------------K- 73 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC-CCceecCceEeeeCCCCCh-----------------------h-
Confidence 44677889999999999977766789999999864 7999999999985432100 0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHH
Q 007547 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (599)
Q Consensus 369 ~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL 448 (599)
..|
T Consensus 74 ----------------------------------------------------------~~g------------------- 76 (307)
T PLN03116 74 ----------------------------------------------------------KPG------------------- 76 (307)
T ss_pred ----------------------------------------------------------hcC-------------------
Confidence 000
Q ss_pred hhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCC---CCEEEEEEEEEEecCCC---CC-cccCchhHHHhhcCCCCCC
Q 007547 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPT---GR-IHKGVCSTWMKNAIPLEGN 521 (599)
Q Consensus 449 ~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~---~~~i~l~v~~v~~~~~~---g~-~~~G~~S~~L~~l~~g~~~ 521 (599)
.+...|+|||||+|... ..+++|+|+.+.+..+. +. ...|++|+||+++++|
T Consensus 77 ------------------~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G--- 135 (307)
T PLN03116 77 ------------------APHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPG--- 135 (307)
T ss_pred ------------------CcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCC---
Confidence 22347999999998432 24899999987654442 11 1579999999999999
Q ss_pred CCceEEEEEeeCCCCcC-CC-CCCCcEEEEeCCCChHHHHHHHHHHHHHhhc-CCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 522 GDCSWAPIFIRPSNFKL-PA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 522 ~~~~~v~i~~~~~~F~L-p~-~~~~piImIg~GTGIAPfrsflqer~~~~~~-g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.|.|.+|.|.|.+ |. +..+|+||||+|||||||+||+++.+..... ....++++||||||+.+ |++|.+||+
T Consensus 136 ---d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~ 211 (307)
T PLN03116 136 ---DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFE 211 (307)
T ss_pred ---CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHH
Confidence 89999999998876 43 5568999999999999999999988763211 11247899999999988 999999986
No 28
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.87 E-value=2.9e-21 Score=178.14 Aligned_cols=136 Identities=24% Similarity=0.335 Sum_probs=118.7
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCC-hhHHHHHHH
Q 007547 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARFYKW 164 (599)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-~na~~F~~~ 164 (599)
|+|+|+|+||||+++|+.|++.+.+. |+.++++++.+.+..+ +.+++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~--g~~v~~~~~~~~~~~~------l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEA--GAEVDLLEVADADAED------LLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhc--CCeEEEEEcccCCHHH------HhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 58999999999999999999999987 8899999999887766 78899999999999999999 999999999
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHH
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELV 235 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l 235 (599)
|.... ++|+++++||+|++.|+ ||.+.+.+++.|+++|++++.+....+..+ ...+.+.+|.+.+
T Consensus 73 l~~~~-----~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 73 LEDID-----LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKDL 139 (140)
T ss_pred hhhCC-----CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHHh
Confidence 98754 78999999999999998 999999999999999999999866655544 3445566676543
No 29
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.86 E-value=1.5e-20 Score=195.12 Aligned_cols=103 Identities=28% Similarity=0.556 Sum_probs=87.7
Q ss_pred CceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEee-CCCCcCCCCCCCcEEEE
Q 007547 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR-PSNFKLPANPSVPIIMV 549 (599)
Q Consensus 471 pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~-~~~F~Lp~~~~~piImI 549 (599)
+|+|||+|+|. .+.++|+|+.+. .|.||+||+++++| +.|.+.++ .+.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~~---------~G~~S~~L~~l~~G------d~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKHP---------GGLCSGYLHGLKPG------DTIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeCC---------CccchhhHhhCCCc------CEEEEEeccCCCccCC-CCCCCEEEE
Confidence 59999999984 478999987632 69999999999999 89999864 5689987 457899999
Q ss_pred eCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+|||||||+|+|+++. ..++++||||+|+++.|++|++||+
T Consensus 162 AgGtGIaP~~s~l~~~~-------~~~~v~L~~g~r~~~~d~~~~~eL~ 203 (289)
T cd06201 162 GAGTGIAPLAGFIRANA-------ARRPMHLYWGGRDPASDFLYEDELD 203 (289)
T ss_pred ecCcCHHHHHHHHHhhh-------ccCCEEEEEEecCcccchHHHHHHH
Confidence 99999999999998752 2468999999999865999999986
No 30
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.85 E-value=1.3e-20 Score=180.31 Aligned_cols=140 Identities=27% Similarity=0.461 Sum_probs=117.4
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~ 164 (599)
+|.|+|+|+|||||++|+.|++.+.+ ..++++++++.+..+ +.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~~~------l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASKED------LNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCHhH------HhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 58999999999999999999999863 347889998887666 88999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCc-ch-hHHHHHHHHHHHHHHHCCCeEEecc------------e--------ee-cCC
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL------------G--------LG-DDD 221 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~i~~~------------g--------~~-D~~ 221 (599)
|.... ++++++++||+||+ .| +|||.+.+.+.+.|++.|++++... . +. |..
T Consensus 71 l~~~~-----l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEELD-----FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcCC-----CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 87644 88999999999998 47 6999999999999999999988765 0 11 222
Q ss_pred C---CcHHHHHHHHHHHHHHH
Q 007547 222 Q---CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 222 ~---~~e~~~~~W~~~l~~~L 239 (599)
+ -.++.+.+|.++|.+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 1 24788889988776543
No 31
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.85 E-value=3.9e-21 Score=212.09 Aligned_cols=188 Identities=15% Similarity=0.104 Sum_probs=153.9
Q ss_pred hHHHHHHhhcccCCCCcchhhhHHHHHHHHHHhhheeeeeccCCCCcCCCCCCCCCCCCCCcchhhHHHHh-----cCCC
Q 007547 10 VKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIA-----AGKT 84 (599)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 84 (599)
.++|.++|++++.+ ++++.+||++ ||. +||++.. +++..|. ..++
T Consensus 203 ~~~v~~~l~~~~~l--~l~~~~i~p~-HG~-------i~r~~~~--------------------~~l~~Y~~~~~~~~~~ 252 (479)
T PRK05452 203 SRLVTPKITEILGF--NLPVDMIATS-HGV-------VWRDNPT--------------------QIVELYLKWAADYQED 252 (479)
T ss_pred HHHHHHHHHHHhhc--CCCCCEEECC-CCc-------eEeCCHH--------------------HHHHHHHHHhhccCcC
Confidence 34788999999976 7789999999 999 8997653 3344433 2567
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~ 164 (599)
+|+|+|+|+|||||+||+.|++++.+.-.|++++++++++.+.++ ++.++.+++.+||+|||||+|.+| .+..|++.
T Consensus 253 kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~~ 329 (479)
T PRK05452 253 RITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLEE 329 (479)
T ss_pred cEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHHHHH
Confidence 899999999999999999999999865114678999999998876 666677899999999999877777 69999999
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHH
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELD 240 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L~ 240 (599)
+.... ++|+++++|| +|+|+|.+++.+.++|+++|++.+ +...+...+ +..+.+.++.+.+.++++
T Consensus 330 l~~~~-----l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 330 ITGLR-----FRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred hhccC-----cCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 98765 8999999999 899999999999999999999986 445555544 345667778888876665
No 32
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.85 E-value=3.9e-20 Score=191.86 Aligned_cols=182 Identities=27% Similarity=0.413 Sum_probs=142.7
Q ss_pred CCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCC
Q 007547 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (599)
Q Consensus 289 ~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~ 368 (599)
|-..+|+.++|+..+.|+.+.+..+++++.|+.+ ..+.|+||.++.|.++....
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~~~------------------------- 56 (286)
T cd06208 3 YKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPPGTDA------------------------- 56 (286)
T ss_pred CCCCCCeEEEEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECCCcch-------------------------
Confidence 3356788899999999997665568999999974 47999999999885432100
Q ss_pred CCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHH
Q 007547 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (599)
Q Consensus 369 ~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL 448 (599)
..|
T Consensus 57 ----------------------------------------------------------~~g------------------- 59 (286)
T cd06208 57 ----------------------------------------------------------KNG------------------- 59 (286)
T ss_pred ----------------------------------------------------------hcC-------------------
Confidence 000
Q ss_pred hhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC---CCCEEEEEEEEEEecCCCC-CcccCchhHHHhhcCCCCCCCCc
Q 007547 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDC 524 (599)
Q Consensus 449 ~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~---~~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~ 524 (599)
++..+|+|||||+|.. .++.++|+|+.+.+.++.+ ..+.|++|+||+++++|
T Consensus 60 ------------------~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~G------ 115 (286)
T cd06208 60 ------------------KPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPG------ 115 (286)
T ss_pred ------------------CCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCC------
Confidence 3456799999999854 2468999999987655443 45679999999999999
Q ss_pred eEEEEEeeCCCCcC-CCCCCCcEEEEeCCCChHHHHHHHHHHHHHhh-cCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 525 SWAPIFIRPSNFKL-PANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 525 ~~v~i~~~~~~F~L-p~~~~~piImIg~GTGIAPfrsflqer~~~~~-~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.|.|..|.|+|.+ |.+..+|+||||+|||||||+||++++..... .....++++||||+|+.+ |++|++||+
T Consensus 116 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~ 190 (286)
T cd06208 116 DDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELE 190 (286)
T ss_pred CEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHH
Confidence 89999999997655 44556899999999999999999999886421 112457899999999998 999999985
No 33
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.84 E-value=3.4e-20 Score=172.19 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=107.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEE-EEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK-VVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~-v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|+++|+|+|+|||||++|+.|++.+... |+.++ +.++.+++.. ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKD--GHEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhC--CeeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 5899999999999999999999999877 77776 5666653221 112668899999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCC---CcHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELV 235 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~---~~e~~~~~W~~~l 235 (599)
+++.. +++++++||+||+.| ++||.+++.++++|+++ .+..+.+... .+.+.+.+|.+++
T Consensus 75 ~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~-----~~~~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSS-----HPVLKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred HHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCc-----CCceeEecCCcccccHHHHHHHHHHh
Confidence 99854 578999999999999 69999999999999776 2333444332 3567778998875
No 34
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.83 E-value=3.3e-20 Score=192.47 Aligned_cols=144 Identities=33% Similarity=0.529 Sum_probs=125.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
..+-.|||+||||||+++|+.+++.+.+. ...++++|++ |+..+ ++ +++++|++.|+-+|+|| +..|+
T Consensus 46 ~~~~~vfy~s~~GtA~~~A~~~~e~~~sl--d~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~ 113 (601)
T KOG1160|consen 46 LIKSKVFYSSLTGTAKKAAKSVHEKLKSL--DELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFL 113 (601)
T ss_pred CccceEEEEeccchHHHHHHHHHHHHHhc--ccchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHH
Confidence 34458999999999999999999999987 6668899999 87777 77 66777777777699988 78999
Q ss_pred HHHhcCCCC----CCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHH
Q 007547 163 KWFTEGNDR----GPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWP 237 (599)
Q Consensus 163 ~~L~~~~~~----~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~ 237 (599)
+||.+...+ +.+|++++||||||||+.| ++||..++++|+++..+||.|+.|+|++|.+. ..+++|+..+.+
T Consensus 114 ~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~ 190 (601)
T KOG1160|consen 114 QWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAE 190 (601)
T ss_pred HHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHH
Confidence 999986544 4789999999999999997 99999999999999999999999999999764 445599999999
Q ss_pred HHHH
Q 007547 238 ELDQ 241 (599)
Q Consensus 238 ~L~~ 241 (599)
.|++
T Consensus 191 ~Lk~ 194 (601)
T KOG1160|consen 191 TLKD 194 (601)
T ss_pred HHcC
Confidence 9876
No 35
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.82 E-value=2.7e-19 Score=168.35 Aligned_cols=143 Identities=24% Similarity=0.312 Sum_probs=118.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|+++.|+|+|+|||||.+|+.|++.|.+. ++++.+.......... +..++.++++++|+|.|+.|+++.+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~--~~~~~~~~~~~~~~~~------~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGAD--GFEVDIDIRPGIKDDL------LESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccC--CceEEEeecCCcchhh------hccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 68999999999999999999999999987 7777444333333322 457899999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhH-HHHHHHHHHHHHHHCC--CeEEecceee--cCCC--CcHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQG--GARLVPLGLG--DDDQ--CIEDDFTAWRELV 235 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lG--a~~i~~~g~~--D~~~--~~e~~~~~W~~~l 235 (599)
+.+.... +++++||+||+||+.|.. ||.+...+.+.|+..| +....+.... +..+ ..++.+..|.+++
T Consensus 73 ~~~~~~~-----~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEPID-----FKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhcccC-----cCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 9998843 899999999999999966 9999999999999999 5555555444 3333 6889999999987
Q ss_pred HHH
Q 007547 236 WPE 238 (599)
Q Consensus 236 ~~~ 238 (599)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 653
No 36
>PRK09267 flavodoxin FldA; Validated
Probab=99.81 E-value=9.5e-19 Score=167.49 Aligned_cols=142 Identities=25% Similarity=0.439 Sum_probs=118.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|++++|+|+|+||||+++|+.|++.+.+ ..++++++.+.+..+ +..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~~~------l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASKED------FEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCHhh------HhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 4689999999999999999999999963 247888998876655 889999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcc-h-hHHHHHHHHHHHHHHHCCCeEEecc---e-----------------eecC
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL---G-----------------LGDD 220 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~---g-----------------~~D~ 220 (599)
+.+.... ++++++++||+||+. | ++||.+.+.+.+.|++.|++.+..+ | ..|.
T Consensus 71 ~~~~~~~-----l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEID-----FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcCC-----CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 9886644 889999999999985 8 8999999999999999999877652 1 1122
Q ss_pred CC---CcHHHHHHHHHHHHHHH
Q 007547 221 DQ---CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 221 ~~---~~e~~~~~W~~~l~~~L 239 (599)
+. -.++.+++|.+++.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 21 24688999999987654
No 37
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.80 E-value=1.7e-19 Score=182.91 Aligned_cols=124 Identities=27% Similarity=0.348 Sum_probs=100.5
Q ss_pred ChHHHHHHhcC-CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhc-CCCCCCCCceEEEEEeeCC
Q 007547 457 PIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPS 534 (599)
Q Consensus 457 p~~~ll~~l~p-~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~v~i~~~~~ 534 (599)
-.+|++.+..+ ...+|+|||||+|. ++.++|+|+.+... .| +.|.||+||++. ++| +.|.|.+|++
T Consensus 33 ~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~--~~--~~G~~S~~L~~~~~~G------d~v~i~gp~g 100 (245)
T cd06200 33 QAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA--DG--GLGLGSGWLTRHAPIG------ASVALRLREN 100 (245)
T ss_pred cCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC--CC--CCeeechhhhhCCCCC------CEEEEEecCC
Confidence 35777777623 26789999999985 57899999886421 12 359999999985 788 8999999865
Q ss_pred -CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 -NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 -~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.|.+|. ..+|+||||+|||||||+||++++... ..++++||||||+.+.|++|.+||+
T Consensus 101 g~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~-----~~~~~~l~~g~r~~~~d~~~~~el~ 159 (245)
T cd06200 101 PGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARA-----GRHRNWLLFGERQAAHDFFCREELE 159 (245)
T ss_pred CcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhc-----cCCCeEEEEecCCccccHhHHHHHH
Confidence 898875 568999999999999999999998762 2368999999999855999999985
No 38
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.73 E-value=1.8e-17 Score=174.50 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=144.1
Q ss_pred cchHHHHHHhhcccCCCCcchhhhHHHHHHHHHHhhheeeeeccCCCCcCCCCCCCCCCCCCCcchhhHHHHhc-----C
Q 007547 8 DLVKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----G 82 (599)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 82 (599)
...++|..+|+++. .+++.|||++ ||. +||++.. +++..|.+ .
T Consensus 198 p~~~~v~~~l~~~~----~l~i~~IaP~-HG~-------i~~~~~~--------------------~i~~~Y~~W~~~~~ 245 (388)
T COG0426 198 PNARLVLWALKKIK----LLKIEMIAPS-HGP-------IWRGNPK--------------------EIVEAYRDWAEGQP 245 (388)
T ss_pred ccHHHHHHHHhhhc----ccCccEEEcC-CCc-------eeeCCHH--------------------HHHHHHHHHHccCC
Confidence 34678999999998 4799999999 999 9998765 45555543 2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
.++|.|+|+|++|+|+.+|+.|+++|.+. |+.+.++++.+.+.++ ++..+.+++.+++++||+ ++++++.++.++
T Consensus 246 ~~~V~l~Y~smyg~T~~ma~aiaegl~~~--gv~v~~~~~~~~~~~e--I~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l 320 (388)
T COG0426 246 KGKVDLIYDSMYGNTEKMAQAIAEGLMKE--GVDVEVINLEDADPSE--IVEEILDAKGLVVGSPTI-NGGAHPPIQTAL 320 (388)
T ss_pred cceEEEEEecccCCHHHHHHHHHHHhhhc--CCceEEEEcccCCHHH--HHHHHhhcceEEEecCcc-cCCCCchHHHHH
Confidence 33799999999999999999999999998 9999999999988776 899999999999999999 555666688899
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCC
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDD 221 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~ 221 (599)
..+.... .+++.++||| +|+|-+.+.+.+.++|+++|.+...+-.+.-..
T Consensus 321 ~~v~~~~-----~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~~ 370 (388)
T COG0426 321 GYVLALA-----PKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKFR 370 (388)
T ss_pred HHHHhcc-----CcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEeccceEEEec
Confidence 9998876 7789999999 899999999999999999999988775555443
No 39
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.71 E-value=2.1e-17 Score=167.94 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=89.7
Q ss_pred CceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeC-CCCcCCCC-CCCcEEE
Q 007547 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP-SNFKLPAN-PSVPIIM 548 (599)
Q Consensus 471 pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~-~~F~Lp~~-~~~piIm 548 (599)
.|+|||+|+|. .+.++|+|+.+. .|.+|+||+++++| +.|.|..|. |.|.++.. ..+|+||
T Consensus 49 ~R~ySias~p~--~~~l~~~ik~~~---------~G~~S~~L~~l~~G------d~v~i~gp~~g~f~l~~~~~~~~~vl 111 (248)
T PRK10926 49 QRAYSYVNAPD--NPDLEFYLVTVP---------EGKLSPRLAALKPG------DEVQVVSEAAGFFVLDEVPDCETLWM 111 (248)
T ss_pred EeeecccCCCC--CCeEEEEEEEeC---------CCCcChHHHhCCCC------CEEEEecCCCcceEccCCCCCCeEEE
Confidence 59999999985 357899988753 69999999999999 899999987 56777654 3479999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+|||||||+|++++.... + ..++++||||+|+.+ |++|++||+
T Consensus 112 IagGtGItP~~s~l~~~~~~---~-~~~~v~l~~g~r~~~-d~~~~~el~ 156 (248)
T PRK10926 112 LATGTAIGPYLSILQEGKDL---E-RFKNLVLVHAARYAA-DLSYLPLMQ 156 (248)
T ss_pred EEeeeeHHHHHHHHHhhHhh---C-CCCcEEEEEeCCcHH-HHHHHHHHH
Confidence 99999999999999997642 2 457899999999998 999999985
No 40
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.71 E-value=2.9e-17 Score=178.02 Aligned_cols=107 Identities=19% Similarity=0.311 Sum_probs=93.7
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
.+|+|||+|+|. .+.++|+|+.+. .|.+|+||++ +++| +.|.|.+|.|.|.++.+..+|+||
T Consensus 204 ~~R~ySias~p~--~~~l~~~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v~gP~G~f~l~~~~~~~~vl 266 (399)
T PRK13289 204 EIRQYSLSDAPN--GKYYRISVKREA---------GGKVSNYLHDHVNVG------DVLELAAPAGDFFLDVASDTPVVL 266 (399)
T ss_pred ceeEEEeeeCCC--CCeEEEEEEECC---------CCeehHHHhhcCCCC------CEEEEEcCccccccCCCCCCcEEE
Confidence 569999999985 468899887632 4999999987 9999 899999999999998767789999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+|||||||++++++.... + ..++++||||||+.+ |++|++||+
T Consensus 267 IagGtGIaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~eL~ 311 (399)
T PRK13289 267 ISGGVGITPMLSMLETLAAQ---Q-PKRPVHFIHAARNGG-VHAFRDEVE 311 (399)
T ss_pred EecCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCChh-hchHHHHHH
Confidence 99999999999999998752 2 457999999999998 999999985
No 41
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.70 E-value=2.3e-17 Score=163.50 Aligned_cols=121 Identities=27% Similarity=0.408 Sum_probs=102.4
Q ss_pred ChHHHHHHhcCC---CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeC
Q 007547 457 PIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (599)
Q Consensus 457 p~~~ll~~l~p~---l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~ 533 (599)
..+|++.+-.|. ...|+|||+|+|.. .+.++|+|+.+. .|.+|+||.++.+| +.+.|.+|.
T Consensus 24 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~---------~G~~s~~l~~~~~G------~~v~i~gP~ 87 (223)
T cd00322 24 KPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVP---------GGPFSAWLHDLKPG------DEVEVSGPG 87 (223)
T ss_pred CCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeC---------CCchhhHHhcCCCC------CEEEEECCC
Confidence 456666665343 57899999999854 478999998753 59999999999998 899999999
Q ss_pred CCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 534 ~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+|.++.+..+|+||||+|||||||++++++.... + ..++++||||+|+.+ |++|++||+
T Consensus 88 G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~ 147 (223)
T cd00322 88 GDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD---K-PGGEITLLYGARTPA-DLLFLDELE 147 (223)
T ss_pred cccccCcccCCcEEEEecCCchhHHHHHHHHHHhh---C-CCCcEEEEEecCCHH-HhhHHHHHH
Confidence 99876666678999999999999999999998863 2 457899999999998 999999986
No 42
>PRK05569 flavodoxin; Provisional
Probab=99.70 E-value=2.6e-16 Score=145.91 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=109.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCC-hhHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARF 161 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-~na~~F 161 (599)
|++++|+|+|+||||+.+|+.|++++.+. |+.++++++.+.+..+ +.+++.+||++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~--g~~v~~~~~~~~~~~~------~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEA--GAEVTIKHVADAKVED------VLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhC--CCeEEEEECCcCCHHH------HhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 46899999999999999999999999877 7889999999887766 88999999999999888764 789999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHH-HHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF-NKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELV 235 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l 235 (599)
++.+.... ++++++++|| +|+|. +.+.+.+.+.|++.|++.+.+ ......+ +..+...+|.+.|
T Consensus 73 ~~~l~~~~-----~~~K~v~~f~----t~g~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 73 LDQFKLTP-----NENKKCILFG----SYGWDNGEFMKLWKDRMKDYGFNVIGD-LAVNESPNKEELNSAKELGKKL 139 (141)
T ss_pred HHHhhccC-----cCCCEEEEEe----CCCCCCCcHHHHHHHHHHHCCCeEeee-EEEccCCCHHHHHHHHHHHHHH
Confidence 99987643 7899999999 56665 567889999999999998776 3333222 2344555665554
No 43
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.69 E-value=7.9e-17 Score=166.80 Aligned_cols=117 Identities=16% Similarity=0.284 Sum_probs=95.1
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImI 549 (599)
..|+|||+|+|.. .+.++|+|++........+...|.+|+||+++++| ++|.|.+|.|.|.++ +..+|+|||
T Consensus 85 ~~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~-~~~~~~vlI 156 (283)
T cd06188 85 VSRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPG------DKVTASGPFGEFFIK-DTDREMVFI 156 (283)
T ss_pred cccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCC------CEEEEECcccccccc-CCCCcEEEE
Confidence 3599999999854 57899999875422110123479999999999999 899999999999886 456899999
Q ss_pred eCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+|||||||++++++.+.. +....+++||||+|+.+ |.+|.+||+
T Consensus 157 AgGtGItP~~s~l~~~~~~---~~~~~~v~l~~g~r~~~-d~~~~~el~ 201 (283)
T cd06188 157 GGGAGMAPLRSHIFHLLKT---LKSKRKISFWYGARSLK-ELFYQEEFE 201 (283)
T ss_pred EecccHhHHHHHHHHHHhc---CCCCceEEEEEecCCHH-HhhHHHHHH
Confidence 9999999999999998752 21246899999999988 999999985
No 44
>PRK05568 flavodoxin; Provisional
Probab=99.69 E-value=3.8e-16 Score=144.94 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=109.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCC-hhHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARF 161 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-~na~~F 161 (599)
|++++|+|+|+||||+++|+.|++.+.+. |++++++++.+.+..+ +.+++.+||++|||+.|.+| ..+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~--g~~v~~~~~~~~~~~~------~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKEN--GAEVKLLNVSEASVDD------VKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHC--CCeEEEEECCCCCHHH------HHhCCEEEEECCccCcccccchhHHHH
Confidence 46899999999999999999999999877 8899999999887766 88999999999999888864 789999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHH-HHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF-NKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELV 235 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l 235 (599)
++.+... ++++++++|| +|+|. +.+.+.+.+.|+++|++.+.+.......+ +..+.+.+|.+.+
T Consensus 73 ~~~~~~~------~~~k~~~~f~----t~G~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 73 VESISSL------VKGKKLVLFG----SYGWGDGEWMRDWVERMEGYGANLVNEGLIVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred HHHhhhh------hCCCEEEEEE----ccCCCCChHHHHHHHHHHHCCCEEeCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 9887542 6899999999 56664 55789999999999999888744443322 3445556666554
No 45
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.68 E-value=8.1e-17 Score=160.77 Aligned_cols=121 Identities=23% Similarity=0.348 Sum_probs=101.6
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCC
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSN 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~ 535 (599)
..+|++.+-.|....|+|||+|.+.. .+.++|+|+.+. .|.+|+||.+ +++| +.+.|.+|.|.
T Consensus 27 ~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP~G~ 90 (224)
T cd06189 27 LAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAVP---------GGSFSDYVFEELKEN------GLVRIEGPLGD 90 (224)
T ss_pred CCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEecC---------CCccHHHHHHhccCC------CEEEEecCCcc
Confidence 45666666545567999999999854 578999987742 5899999986 8999 89999999999
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.++.+..+++||||+|||||||++++++.... + ..++++|+||+|+.. |++|++||+
T Consensus 91 ~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~ 148 (224)
T cd06189 91 FFLREDSDRPLILIAGGTGFAPIKSILEHLLAQ---G-SKRPIHLYWGARTEE-DLYLDELLE 148 (224)
T ss_pred EEeccCCCCCEEEEecCcCHHHHHHHHHHHHhc---C-CCCCEEEEEecCChh-hccCHHHHH
Confidence 988766678999999999999999999998862 2 357899999999998 999999985
No 46
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.68 E-value=7e-17 Score=171.38 Aligned_cols=120 Identities=21% Similarity=0.317 Sum_probs=99.5
Q ss_pred hHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCCCC
Q 007547 458 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNF 536 (599)
Q Consensus 458 ~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~~F 536 (599)
.+|++.+-.|....|+|||+|+|.. .+.++|+|+.+. .|.+|+||. ++++| +.+.+.+|.|.|
T Consensus 134 pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~l~~~l~~G------~~v~v~gP~G~~ 197 (339)
T PRK07609 134 AGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHMP---------GGVFTDHVFGALKER------DILRIEGPLGTF 197 (339)
T ss_pred CCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEecC---------CCccHHHHHHhccCC------CEEEEEcCceeE
Confidence 4566665435556899999999864 578999998743 589999997 58998 899999999999
Q ss_pred cCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 537 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 537 ~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.++.+..+|+||||+|||||||++++++... .+ ..++++||||+|+.+ |++|+++|+
T Consensus 198 ~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~---~~-~~~~i~l~~g~r~~~-dl~~~e~l~ 254 (339)
T PRK07609 198 FLREDSDKPIVLLASGTGFAPIKSIVEHLRA---KG-IQRPVTLYWGARRPE-DLYLSALAE 254 (339)
T ss_pred EecCCCCCCEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEecCChH-HhccHHHHH
Confidence 9986667899999999999999999999886 22 456899999999998 888887763
No 47
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.67 E-value=1.6e-16 Score=172.76 Aligned_cols=119 Identities=16% Similarity=0.280 Sum_probs=100.1
Q ss_pred CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEE
Q 007547 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPII 547 (599)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piI 547 (599)
....|+|||+|.|.. .+.++|+|+++..+...++...|.+|+||+++++| +.+.|.+|.|.|.++ +..+|+|
T Consensus 207 ~~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~f~~~-~~~~~iv 278 (409)
T PRK05464 207 EPVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPG------DKVTISGPFGEFFAK-DTDAEMV 278 (409)
T ss_pred CceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCC------CEEEEEccccCcEec-CCCceEE
Confidence 346799999999854 56899999987555444555679999999999999 899999999999876 4568999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|||||||++++++.+... ...++++||||+|+++ |.+|.+||+
T Consensus 279 lIAgGtGIaP~~sml~~~l~~~---~~~~~v~L~~g~r~~~-d~~~~~el~ 325 (409)
T PRK05464 279 FIGGGAGMAPMRSHIFDQLKRL---KSKRKISFWYGARSLR-EMFYVEDFD 325 (409)
T ss_pred EEEeccChhHHHHHHHHHHhCC---CCCceEEEEEecCCHH-HhhHHHHHH
Confidence 9999999999999999887632 1346899999999998 999999986
No 48
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.67 E-value=1.9e-16 Score=172.10 Aligned_cols=120 Identities=17% Similarity=0.276 Sum_probs=98.4
Q ss_pred CCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcE
Q 007547 467 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (599)
Q Consensus 467 p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~pi 546 (599)
.....|+|||+|+|.. .+.++|+|+++.+.....+...|.+|+||+++++| +.+.|.+|.|.|.++ +..+|+
T Consensus 202 ~~~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~-~~~~~l 273 (405)
T TIGR01941 202 DEETVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPG------DKVTISGPFGEFFAK-DTDAEM 273 (405)
T ss_pred CCccceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCc------CEEEEEeccCCCeec-CCCCCE
Confidence 3456799999999864 57899999986433222234469999999999999 899999999999886 456899
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 547 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 547 ImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||||+|||||||++++++.+... ....+++||||+|+++ |.+|.+||+
T Consensus 274 vlIAgGtGIaP~lsmi~~~l~~~---~~~~~v~l~~g~R~~~-dl~~~~el~ 321 (405)
T TIGR01941 274 VFIGGGAGMAPMRSHIFDQLKRL---KSKRKISFWYGARSLR-EMFYQEDFD 321 (405)
T ss_pred EEEecCcCcchHHHHHHHHHhcC---CCCCeEEEEEecCCHH-HHhHHHHHH
Confidence 99999999999999999877521 1346899999999988 999999986
No 49
>PRK05713 hypothetical protein; Provisional
Probab=99.67 E-value=8.6e-17 Score=168.89 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=97.8
Q ss_pred hHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCC-CC
Q 007547 458 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NF 536 (599)
Q Consensus 458 ~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~-~F 536 (599)
.+|++.+..+....|+|||+|.|.. .+.++|+|+.+. .|.+|+||.++++| +.|.+..+.| .|
T Consensus 121 ~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~~---------~G~~s~~l~~l~~G------d~v~l~~p~gg~~ 184 (312)
T PRK05713 121 AGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCSR---------PGAFCDAARQLQVG------DLLRLGELRGGAL 184 (312)
T ss_pred CCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEcC---------CCccchhhhcCCCC------CEEEEccCCCCce
Confidence 4556554424446899999999854 578999997643 69999999999999 8999988886 66
Q ss_pred cCCCC-CCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 537 KLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 537 ~Lp~~-~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.++.+ ..+|+||||+|||||||+|++++... .+ ..++++||||+|+.+ |++|.+||+
T Consensus 185 ~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~ 242 (312)
T PRK05713 185 HYDPDWQERPLWLLAAGTGLAPLWGILREALR---QG-HQGPIRLLHLARDSA-GHYLAEPLA 242 (312)
T ss_pred EecCCCCCCcEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEEcCchH-HhhhHHHHH
Confidence 67654 46899999999999999999998876 23 347899999999998 999999985
No 50
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.67 E-value=1.4e-16 Score=168.67 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=92.8
Q ss_pred CceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEE
Q 007547 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (599)
Q Consensus 471 pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImI 549 (599)
.|+|||+|.|.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.+..|.|.|.++.+..+|+|||
T Consensus 54 ~R~ySias~p~~-~~~l~i~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v~gP~G~f~l~~~~~~~~vli 117 (332)
T PRK10684 54 LRAYTLSSTPGV-SEFITLTVRRID---------DGVGSQWLTRDVKRG------DYLWLSDAMGEFTCDDKAEDKYLLL 117 (332)
T ss_pred eeeecccCCCCC-CCcEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEeCCccccccCCCCCCcEEEE
Confidence 489999999854 467999998753 589999997 59999 8999999999999986667899999
Q ss_pred eCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+|||||||++++++.... + ...+++||||+|+.+ |++|.+||+
T Consensus 118 AgG~GItP~~sml~~~~~~---~-~~~~v~l~y~~r~~~-~~~~~~el~ 161 (332)
T PRK10684 118 AAGCGVTPIMSMRRWLLKN---R-PQADVQVIFNVRTPQ-DVIFADEWR 161 (332)
T ss_pred ecCcCcchHHHHHHHHHhc---C-CCCCEEEEEeCCChH-HhhhHHHHH
Confidence 9999999999999987652 2 347899999999998 999999985
No 51
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.67 E-value=2.6e-16 Score=161.02 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=93.2
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
..|.|||+|+|.. ++.+.|+|++.. .|..|+||+ ++++| |+|.|..|.|+|.|+..+..|++|
T Consensus 52 ~~R~YSl~s~p~~-~~~~~isVk~~~---------~G~~S~~Lh~~lk~G------d~l~v~~P~G~F~l~~~~~~~~ll 115 (266)
T COG1018 52 LLRAYSLSSAPDE-DSLYRISVKRED---------GGGGSNWLHDHLKVG------DTLEVSAPAGDFVLDDLPERKLLL 115 (266)
T ss_pred eeEEEEeccCCCC-CceEEEEEEEeC---------CCcccHHHHhcCCCC------CEEEEecCCCCccCCCCCCCcEEE
Confidence 5799999999975 468888887753 399999999 69999 899999999999999877779999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHh
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYL 596 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~E 596 (599)
|++|+|||||+|++++... .+ . .++.|+|+||+.+ |..|++|
T Consensus 116 la~G~GITP~lSml~~~~~---~~-~-~~v~l~h~~R~~~-~~af~de 157 (266)
T COG1018 116 LAGGIGITPFLSMLRTLLD---RG-P-ADVVLVHAARTPA-DLAFRDE 157 (266)
T ss_pred EeccccHhHHHHHHHHHHH---hC-C-CCEEEEEecCChh-hcchhhH
Confidence 9999999999999999887 23 4 8899999999999 9999985
No 52
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.67 E-value=1.6e-16 Score=160.24 Aligned_cols=121 Identities=24% Similarity=0.352 Sum_probs=99.9
Q ss_pred ChHHHHHHhcCCC-CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCC
Q 007547 457 PIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPS 534 (599)
Q Consensus 457 p~~~ll~~l~p~l-~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~ 534 (599)
..+|++.+-.|.. ..|+|||+|.+.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.|.+|.|
T Consensus 37 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP~G 100 (238)
T cd06211 37 QAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLVP---------GGIATTYVHKQLKEG------DELEISGPYG 100 (238)
T ss_pred CCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEECC---------CCcchhhHhhcCCCC------CEEEEECCcc
Confidence 4566665543443 5899999999854 578999997742 599999997 58998 8999999999
Q ss_pred CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 ~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|.++.+..+|+||||+|||||||++++++...+ + ..++++||||+|+.. |.+|.+||+
T Consensus 101 ~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~ 159 (238)
T cd06211 101 DFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLER---G-DTRKITLFFGARTRA-ELYYLDEFE 159 (238)
T ss_pred ceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhc---C-CCCcEEEEEecCChh-hhccHHHHH
Confidence 9988766568999999999999999999998762 2 346899999999998 999999986
No 53
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.66 E-value=3.8e-16 Score=155.90 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=90.3
Q ss_pred CCceeecCCCCCCCC--CEEEEEEEEEEecCCCCCcccCchhHHHhhcCC-----CCCCCCceEEEEEeeCCCCcCCC--
Q 007547 470 QPRYYSISSSPRFAP--DRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-----LEGNGDCSWAPIFIRPSNFKLPA-- 540 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~--~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~-----g~~~~~~~~v~i~~~~~~F~Lp~-- 540 (599)
..|.|||+|+|...+ +.++|+|+. .|.+|+||.+... | +.+.+.+|.|.|.++.
T Consensus 59 ~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~~~~~~~~G------~~v~v~gP~G~f~~~~~~ 121 (220)
T cd06197 59 FVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQVARRLREQG------LEVPVLGVGGEFTLSLPG 121 (220)
T ss_pred ceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHhhhcccCCC------ceEEEEecCCcccCCccc
Confidence 459999999996542 788888865 4899999998644 5 8999999999999875
Q ss_pred -CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 541 -NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 541 -~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+..+++||||+|||||||++++++.... +....++.|+||+|+++ |.+|.+||+
T Consensus 122 ~~~~~~illIagG~GItP~~sil~~l~~~---~~~~~~v~l~~~~r~~~-~~~~~~el~ 176 (220)
T cd06197 122 EGAERKMVWIAGGVGITPFLAMLRAILSS---RNTTWDITLLWSLREDD-LPLVMDTLV 176 (220)
T ss_pred ccCCceEEEEecccchhhHHHHHHHHHhc---ccCCCcEEEEEEecchh-hHHHHHHHH
Confidence 3467999999999999999999988752 22357899999999998 999999985
No 54
>PRK08051 fre FMN reductase; Validated
Probab=99.66 E-value=1.6e-16 Score=159.86 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=96.8
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHH-hhcCCCCCCCCceEEEEEeeCCC
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWAPIFIRPSN 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L-~~l~~g~~~~~~~~v~i~~~~~~ 535 (599)
..+|++.+-++....|+|||+|.|.. ++.++|+|+.+. .|..|+++ .++++| +.|.|.+|.|.
T Consensus 31 ~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~~---------~~~~~~~~~~~l~~G------~~v~v~gP~G~ 94 (232)
T PRK08051 31 RAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGASE---------LNLYAMAVMERILKD------GEIEVDIPHGD 94 (232)
T ss_pred CCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEcC---------CCcchHHHHHHcCCC------CEEEEEcCCCc
Confidence 34555555436667899999999853 577999987643 24445454 568998 89999999999
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.++.+..+|+||||+||||||+++++++.... + ...+++||||||+.+ |.+|.+||+
T Consensus 95 ~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~---~-~~~~v~l~~g~r~~~-~~~~~~el~ 152 (232)
T PRK08051 95 AWLREESERPLLLIAGGTGFSYARSILLTALAQ---G-PNRPITLYWGGREED-HLYDLDELE 152 (232)
T ss_pred eEccCCCCCcEEEEecCcCcchHHHHHHHHHHh---C-CCCcEEEEEEeccHH-HhhhhHHHH
Confidence 888766668999999999999999999999862 2 457899999999998 999999985
No 55
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.66 E-value=1.9e-16 Score=162.36 Aligned_cols=117 Identities=21% Similarity=0.220 Sum_probs=97.5
Q ss_pred hHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCC-C
Q 007547 458 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN-F 536 (599)
Q Consensus 458 ~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~-F 536 (599)
.+|++.+-.|...+|+|||++.+ .+.++|+|+. .|.+|+||.++++| +.+.|..|.|+ |
T Consensus 35 pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G~~f 94 (263)
T PRK08221 35 PGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEG------DKLFLRGPYGNGF 94 (263)
T ss_pred CCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCC------CEEEEECCCCCCc
Confidence 46666664365557999999875 4789999864 48999999999999 89999999986 8
Q ss_pred cCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 537 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 537 ~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.++.+..+|+||||+|||||||++++++... ++...++++||||+|+.+ |.+|++||+
T Consensus 95 ~~~~~~~~~~llIAgGtGItP~~sil~~~~~---~~~~~~~v~L~~g~r~~~-~l~~~~el~ 152 (263)
T PRK08221 95 PVDTYKGKELIVVAGGTGVAPVKGLMRYFYE---NPQEIKSLDLILGFKNPD-DILFKEDLK 152 (263)
T ss_pred ccCccCCccEEEEcccccHHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHH
Confidence 8876666899999999999999999999875 222346899999999998 999999986
No 56
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.66 E-value=3.2e-16 Score=156.07 Aligned_cols=121 Identities=22% Similarity=0.246 Sum_probs=99.3
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCC
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSN 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~ 535 (599)
..+|++.+-.|....|+|||+|+|.. .+.++|+|+.+. .|.+|+||++ +++| +.+.|.+|.|.
T Consensus 25 ~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~gP~G~ 88 (222)
T cd06194 25 LPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRKP---------NGAFSGWLGEEARPG------HALRLQGPFGQ 88 (222)
T ss_pred CCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEecc---------CCccchHHHhccCCC------CEEEEecCcCC
Confidence 34666665435566799999999864 378999987642 5999999998 6898 89999999998
Q ss_pred CcCCC-CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~-~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.+.. +..+|+||||+|||||||+++++++..+ + ..++++||||+|+.+ |++|++||+
T Consensus 89 ~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~ 147 (222)
T cd06194 89 AFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQ---G-HQGEIRLVHGARDPD-DLYLHPALL 147 (222)
T ss_pred eeccCCCCCCCEEEEecCcchhhHHHHHHHHHhc---C-CCccEEEEEecCChh-hccCHHHHH
Confidence 76653 4568999999999999999999998762 2 457899999999998 899999985
No 57
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.66 E-value=2.1e-16 Score=164.18 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=98.1
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCC-
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN- 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~- 535 (599)
..+|++.+-.|....|+|||+|+|.. ++.++|+|+. .|.+|.||+++++| +.+.|..|.|.
T Consensus 39 ~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G~~ 100 (289)
T PRK08345 39 KPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEG------DIVGVRGPYGNG 100 (289)
T ss_pred CCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCC------CEEEEeCCCCCC
Confidence 35666665425445689999999854 5789999975 48999999999999 89999999996
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.++....+|+||||+|||||||++++++.+.. +...++++||||+|+.+ |++|++||+
T Consensus 101 f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~---~~~~~~v~l~~~~r~~~-d~~~~deL~ 159 (289)
T PRK08345 101 FPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDN---RWKYGNITLIYGAKYYE-DLLFYDELI 159 (289)
T ss_pred CCcccccCceEEEEecccchhHHHHHHHHHHhc---CCCCCcEEEEEecCCHH-HhhHHHHHH
Confidence 766654457999999999999999999998762 21347899999999998 999999985
No 58
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.65 E-value=2.9e-16 Score=156.40 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=99.7
Q ss_pred hHHHHHHhcCCC--CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCC
Q 007547 458 IGVFFAAVAPHL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS 534 (599)
Q Consensus 458 ~~~ll~~l~p~l--~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~ 534 (599)
.+|++.+..|.. ..|+|||+|.|.. .+.++|+|+... .|.+|+||.+ +++| +.+.|.+|.|
T Consensus 26 pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP~G 89 (224)
T cd06187 26 AGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAVP---------GGRVSNALHDELKVG------DRVRLSGPYG 89 (224)
T ss_pred CCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeCC---------CCcchHHHhhcCccC------CEEEEeCCcc
Confidence 456665553433 4799999998864 478999997632 5999999998 9999 8999999999
Q ss_pred CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 ~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.|.++.+..+++||||+|||||||++++++... ++ ...+++|||++|+.+ |++|.+||+
T Consensus 90 ~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~---~~-~~~~v~l~~~~~~~~-~~~~~~~l~ 148 (224)
T cd06187 90 TFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALR---RG-EPRPVHLFFGARTER-DLYDLEGLL 148 (224)
T ss_pred ceEecCCCCCCEEEEecCcCHHHHHHHHHHHHh---cC-CCCCEEEEEecCChh-hhcChHHHH
Confidence 998876656899999999999999999999876 22 457899999999988 999999985
No 59
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.65 E-value=2e-16 Score=158.62 Aligned_cols=123 Identities=18% Similarity=0.113 Sum_probs=100.2
Q ss_pred ChHHHHHHhcCCC-CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCC
Q 007547 457 PIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS 534 (599)
Q Consensus 457 p~~~ll~~l~p~l-~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~ 534 (599)
..+|++.+-.|.. .+|+|||+|.|.. .+.++|+|+.+. .|.+|.||++ +++| +.+.|.+|.|
T Consensus 25 ~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~~---------~G~~s~~l~~~~~~g------~~v~v~gP~G 88 (232)
T cd06190 25 LPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRKP---------GGAASNALFDNLEPG------DELELDGPYG 88 (232)
T ss_pred CCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEcC---------CCcchHHHhhcCCCC------CEEEEECCcc
Confidence 3456655543555 7899999998854 578999997642 5899999987 6888 8999999999
Q ss_pred CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 ~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.|.++.+..+++||||+|||||||++++++..... ....++++||||+|+.+ |++|++||+
T Consensus 89 ~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~ 149 (232)
T cd06190 89 LAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELS 149 (232)
T ss_pred cceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHH
Confidence 88876665689999999999999999999987631 12457899999999988 999999985
No 60
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.65 E-value=2.1e-16 Score=167.87 Aligned_cols=119 Identities=24% Similarity=0.320 Sum_probs=97.8
Q ss_pred hHHHHHHhcCCC-CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCC
Q 007547 458 IGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSN 535 (599)
Q Consensus 458 ~~~ll~~l~p~l-~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~ 535 (599)
.+|++.+-.|.. ..|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| +.|.|.+|.|.
T Consensus 139 pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~L~~~l~~G------~~v~i~gP~G~ 202 (340)
T PRK11872 139 PGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLLP---------DGVMSNYLRERCQVG------DEILFEAPLGA 202 (340)
T ss_pred CCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEECC---------CCcchhhHhhCCCCC------CEEEEEcCcce
Confidence 445554432433 3799999999854 578999998753 6899999974 9999 89999999999
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.++. ..+|+||||+|||||||++++++... .+ ..++++||||+|+++ |++|.+||+
T Consensus 203 f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-dl~~~~el~ 259 (340)
T PRK11872 203 FYLRE-VERPLVFVAGGTGLSAFLGMLDELAE---QG-CSPPVHLYYGVRHAA-DLCELQRLA 259 (340)
T ss_pred eEeCC-CCCcEEEEeCCcCccHHHHHHHHHHH---cC-CCCcEEEEEecCChH-HhccHHHHH
Confidence 98864 45899999999999999999999876 22 346899999999998 999999986
No 61
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.65 E-value=4e-16 Score=156.80 Aligned_cols=108 Identities=27% Similarity=0.358 Sum_probs=93.2
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
..|+|||+|+|.. .+.++|+|+... .|.+|+||.+ +++| +.+.|.+|.|.|.++.+..+++||
T Consensus 50 ~~R~ySi~s~~~~-~~~l~~~i~~~~---------~G~~s~~l~~~~~~G------d~v~i~gP~G~f~l~~~~~~~~vl 113 (236)
T cd06210 50 TRRSYSLANTPNW-DGRLEFLIRLLP---------GGAFSTYLETRAKVG------QRLNLRGPLGAFGLRENGLRPRWF 113 (236)
T ss_pred cceecccCCCCCC-CCEEEEEEEEcC---------CCccchhhhhCcCCC------CEEEEecCcceeeecCCCCccEEE
Confidence 4699999999864 478999987742 5899999998 9999 899999999999987665689999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+|||||||+++++++... + ..++++||||+|+.+ |.+|.+||+
T Consensus 114 iagGtGiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~ 158 (236)
T cd06210 114 VAGGTGLAPLLSMLRRMAEW---G-EPQEARLFFGVNTEA-ELFYLDELK 158 (236)
T ss_pred EccCcchhHHHHHHHHHHhc---C-CCceEEEEEecCCHH-HhhhHHHHH
Confidence 99999999999999998762 2 347899999999988 999999985
No 62
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.64 E-value=3.5e-16 Score=160.25 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=97.9
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCC-
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN- 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~- 535 (599)
-.+|++.+-.|...+|+|||+|.+ .++++|+|+. .|.+|+||.++++| +.+.|..|.|+
T Consensus 32 ~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~G------d~v~i~gP~G~~ 91 (261)
T TIGR02911 32 KPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEG------DNLFLRGPYGNG 91 (261)
T ss_pred CCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCC------CEEEEecCCCCC
Confidence 346666654466667999999843 5789999864 48999999999999 89999999996
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
|.++.+..+|++|||+||||||+++++++... ++...++++||||+|+.+ |++|++||++
T Consensus 92 f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~---~~~~~~~v~L~~~~r~~~-~~~~~~eL~~ 151 (261)
T TIGR02911 92 FDVDNYKHKELVVVAGGTGVAPVKGVVEYFVK---NPKEIKSLNLILGFKTPD-DILFKEDIAE 151 (261)
T ss_pred cccCccCCceEEEEecccCcHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHH
Confidence 88876566899999999999999999998765 222346899999999998 9999999863
No 63
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.64 E-value=4.1e-16 Score=164.14 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=92.2
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImI 549 (599)
..|.|||+|+|.. ++.++|+|+.+. .|.+|+||+++++| +.|.+.+|.+.|.++.+..+|+|||
T Consensus 102 ~~R~YSiaS~p~~-~~~le~~IK~~~---------~G~~S~~L~~lk~G------d~v~v~GP~f~~~~~~~~~~~lvlI 165 (325)
T PTZ00274 102 CQRFYTPVTANHT-KGYFDIIVKRKK---------DGLMTNHLFGMHVG------DKLLFRSVTFKIQYRPNRWKHVGMI 165 (325)
T ss_pred EEEeeecCCCCCC-CCeEEEEEEEcC---------CCcccHHHhcCCCC------CEEEEeCCeeecccCCCCCceEEEE
Confidence 4699999999864 578999998753 69999999999999 8999988866665555555899999
Q ss_pred eCCCChHHHHHHHHHHHHHhhc--CCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 550 GPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~~~~~--g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+|||||||++++++.+..... +....+++|+||+|+.+ |++|++||+
T Consensus 166 AGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~ 215 (325)
T PTZ00274 166 AGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFD 215 (325)
T ss_pred eCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHH
Confidence 9999999999999988763211 11345899999999998 999998875
No 64
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.64 E-value=5.8e-16 Score=154.96 Aligned_cols=105 Identities=28% Similarity=0.371 Sum_probs=90.9
Q ss_pred CceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEE
Q 007547 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (599)
Q Consensus 471 pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImI 549 (599)
.|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.+.|.+|.|.|.++.+ .+|+|||
T Consensus 47 ~r~ysi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~v~gP~G~~~~~~~-~~~~vli 108 (228)
T cd06209 47 TRSYSFSSAPGD--PRLEFLIRLLP---------GGAMSSYLRDRAQPG------DRLTLTGPLGSFYLREV-KRPLLML 108 (228)
T ss_pred ccccccccCCCC--CeEEEEEEEcC---------CCcchhhHHhccCCC------CEEEEECCcccceecCC-CCeEEEE
Confidence 589999998864 78999987743 5999999999 9998 89999999999887644 5899999
Q ss_pred eCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+|||||||++++++.... + ..++++||||+|+.+ |++|.+||+
T Consensus 109 a~GtGIaP~~~ll~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~ 152 (228)
T cd06209 109 AGGTGLAPFLSMLDVLAED---G-SAHPVHLVYGVTRDA-DLVELDRLE 152 (228)
T ss_pred EcccCHhHHHHHHHHHHhc---C-CCCcEEEEEecCCHH-HhccHHHHH
Confidence 9999999999999998762 2 457899999999988 999999986
No 65
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.64 E-value=6.9e-16 Score=154.80 Aligned_cols=108 Identities=21% Similarity=0.382 Sum_probs=93.7
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
..|+|||+|.|.. .+.++|+|+.+. .|.+|+||.+ +++| +.+.+.+|.|+|.++.+..+++||
T Consensus 45 ~~r~ySi~s~~~~-~~~l~l~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP~G~~~~~~~~~~~~l~ 108 (232)
T cd06212 45 ETRSFSMANTPAD-PGRLEFIIKKYP---------GGLFSSFLDDGLAVG------DPVTVTGPYGTCTLRESRDRPIVL 108 (232)
T ss_pred cccccccCCCCCC-CCEEEEEEEECC---------CCchhhHHhhcCCCC------CEEEEEcCcccceecCCCCCcEEE
Confidence 5689999999864 478999997742 5899999997 9999 899999999999887666789999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+|||||||++++++.... + ..++++||||+|+.. |++|.+||+
T Consensus 109 iagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~ 153 (232)
T cd06212 109 IGGGSGMAPLLSLLRDMAAS---G-SDRPVRFFYGARTAR-DLFYLEEIA 153 (232)
T ss_pred EecCcchhHHHHHHHHHHhc---C-CCCcEEEEEeccchH-HhccHHHHH
Confidence 99999999999999998862 2 457899999999988 999999985
No 66
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.64 E-value=6.5e-16 Score=154.89 Aligned_cols=107 Identities=22% Similarity=0.379 Sum_probs=92.7
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
.+|+|||+|.+. .+.++|+|+.+. .|.+|+||+ ++++| +.+.|.+|.|.|.++.+...++||
T Consensus 45 ~~r~ySi~s~~~--~~~l~~~v~~~~---------~G~~s~~l~~~~~~G------d~v~i~gP~G~f~l~~~~~~~~ll 107 (231)
T cd06191 45 LRRCYSLCSSPA--PDEISITVKRVP---------GGRVSNYLREHIQPG------MTVEVMGPQGHFVYQPQPPGRYLL 107 (231)
T ss_pred EeeeeeccCCCC--CCeEEEEEEECC---------CCccchHHHhcCCCC------CEEEEeCCccceEeCCCCCCcEEE
Confidence 469999999885 578999997742 489999998 59999 899999999999987666789999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+||||||+++++++.... . ...+++||||+|+++ |++|++||+
T Consensus 108 iagG~Gitp~~s~~~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~ 152 (231)
T cd06191 108 VAAGSGITPLMAMIRATLQT---A-PESDFTLIHSARTPA-DMIFAQELR 152 (231)
T ss_pred EecCccHhHHHHHHHHHHhc---C-CCCCEEEEEecCCHH-HHhHHHHHH
Confidence 99999999999999988752 2 357899999999988 999999985
No 67
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.64 E-value=7.1e-16 Score=156.16 Aligned_cols=107 Identities=22% Similarity=0.355 Sum_probs=92.0
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
..|+|||+|.|.. +.++|+|+... .|.+|+||++ +++| +.+.|.+|.|.|.++.+..+++||
T Consensus 56 ~~R~ySi~s~~~~--~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i~gP~G~~~~~~~~~~~lll 118 (247)
T cd06184 56 QIRQYSLSDAPNG--DYYRISVKREP---------GGLVSNYLHDNVKVG------DVLEVSAPAGDFVLDEASDRPLVL 118 (247)
T ss_pred eeEEeEeccCCCC--CeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEEcCCCceECCCCCCCcEEE
Confidence 5699999999853 47888876532 5999999998 9999 899999999999998756789999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+|||||||++++++.... + ..++++||||+|+++ |.+|++||+
T Consensus 119 iagGtGiaP~~~~l~~~~~~---~-~~~~i~l~~~~r~~~-~~~~~~~l~ 163 (247)
T cd06184 119 ISAGVGITPMLSMLEALAAE---G-PGRPVTFIHAARNSA-VHAFRDELE 163 (247)
T ss_pred EeccccHhHHHHHHHHHHhc---C-CCCcEEEEEEcCchh-hHHHHHHHH
Confidence 99999999999999998863 2 457899999999998 889999886
No 68
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.63 E-value=1e-15 Score=138.46 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=74.3
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhc
Q 007547 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (599)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~ 167 (599)
|+|+|+|||||+|++++ |+.+..+.+++.+..+ + .++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~l---------g~~~~~i~~~~~d~~~------~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKL---------GFQHIRIPVDETDDIH------V-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHc---------CCCcEEeecCCcchhh------c-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 78999999999994443 3344445666554433 4 5666666 9999999999999999888653
Q ss_pred CCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHH
Q 007547 168 GNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCK 206 (599)
Q Consensus 168 ~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~ 206 (599)
+.++|||+||++| +.||.+++.+.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 9999999999999876
No 69
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.63 E-value=1.3e-15 Score=154.51 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=90.4
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCC-CcCCCCCCCcEE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN-FKLPANPSVPII 547 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~-F~Lp~~~~~piI 547 (599)
...|+|||+|.|.. .+.++|+|+. .|.+|+||.++++| ++|.|..|.|. |.++. ..+++|
T Consensus 42 ~~~R~ySi~s~~~~-~~~l~l~v~~-----------~G~~s~~l~~l~~G------d~v~i~gP~G~~~~~~~-~~~~~v 102 (246)
T cd06218 42 LLRRPISIHDVDPE-EGTITLLYKV-----------VGKGTRLLSELKAG------DELDVLGPLGNGFDLPD-DDGKVL 102 (246)
T ss_pred cCCCceEeeeccCC-CCEEEEEEEE-----------ECcchHHHhcCCCC------CEEEEEecCCCCcCCCC-CCCcEE
Confidence 45799999998853 4789998875 47789999999999 89999999994 87774 568999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
|||+|||||||++++++... ..++++||||+|+.+ |.+|++||++
T Consensus 103 lIagGtGIaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~eL~~ 147 (246)
T cd06218 103 LVGGGIGIAPLLFLAKQLAE------RGIKVTVLLGFRSAD-DLFLVEEFEA 147 (246)
T ss_pred EEecccCHHHHHHHHHHHHh------cCCceEEEEEccchh-hhhhHHHHHh
Confidence 99999999999999998875 236899999999998 9999999863
No 70
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.63 E-value=5.4e-16 Score=156.29 Aligned_cols=120 Identities=25% Similarity=0.352 Sum_probs=99.7
Q ss_pred ChHHHHHHhcC---CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEee
Q 007547 457 PIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 532 (599)
Q Consensus 457 p~~~ll~~l~p---~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~ 532 (599)
..+|++.+..| ...+|+|||+|.+.. +.++|+|+.+. .|.+|+||. ++++| +.+.|.+|
T Consensus 34 ~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~gP 96 (241)
T cd06214 34 RPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVP---------GGRFSNWANDELKAG------DTLEVMPP 96 (241)
T ss_pred CCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcC---------CCccchhHHhccCCC------CEEEEeCC
Confidence 56777777633 136799999998754 37999987753 599999997 68998 89999999
Q ss_pred CCCCcCCCC-CCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 533 PSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 533 ~~~F~Lp~~-~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.|.|.++.+ ...++||||+|||||||+++++++... + ..++++||||+|+.. |++|.+||+
T Consensus 97 ~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~ 158 (241)
T cd06214 97 AGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAR---E-PASRVTLVYGNRTEA-SVIFREELA 158 (241)
T ss_pred ccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhc---C-CCCcEEEEEEeCCHH-HhhHHHHHH
Confidence 999988866 578999999999999999999998762 2 357899999999998 999999985
No 71
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.63 E-value=1.1e-15 Score=153.07 Aligned_cols=108 Identities=22% Similarity=0.315 Sum_probs=92.2
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
..|+|||+|.|.. .+.++|+|+... .|.+|.||+ ++++| +.+.|.+|.|.|.++.....++||
T Consensus 45 ~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~~~~G------~~v~i~gP~G~f~~~~~~~~~~vl 108 (231)
T cd06215 45 VYRAYTLSSSPSR-PDSLSITVKRVP---------GGLVSNWLHDNLKVG------DELWASGPAGEFTLIDHPADKLLL 108 (231)
T ss_pred EEEeeecccCCCC-CCcEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEEcCcceeEeCCCCCCcEEE
Confidence 4699999999854 567999987743 589999997 58998 899999999999987555689999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+|||||||++++++... .+ ..++++||||+|+++ |++|.+||+
T Consensus 109 IagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~ 153 (231)
T cd06215 109 LSAGSGITPMMSMARWLLD---TR-PDADIVFIHSARSPA-DIIFADELE 153 (231)
T ss_pred EecCcCcchHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhhHHHHHH
Confidence 9999999999999999875 22 457899999999998 999999885
No 72
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.63 E-value=1.1e-15 Score=152.99 Aligned_cols=107 Identities=23% Similarity=0.318 Sum_probs=91.3
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
..|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| +++.|.+|.|.|.++. ..+++||
T Consensus 43 ~~r~ysi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP~G~~~~~~-~~~~~ll 105 (227)
T cd06213 43 AARSYSFANAPQG-DGQLSFHIRKVP---------GGAFSGWLFGADRTG------ERLTVRGPFGDFWLRP-GDAPILC 105 (227)
T ss_pred cccccccCCCCCC-CCEEEEEEEECC---------CCcchHHHHhcCCCC------CEEEEeCCCcceEeCC-CCCcEEE
Confidence 4699999999854 578999987642 5899999965 8898 8999999999999864 4589999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+|||||||++++++... ++ ..++++||||+|+++ |.+|.+||+
T Consensus 106 iagG~GiaP~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~~l~ 150 (227)
T cd06213 106 IAGGSGLAPILAILEQARA---AG-TKRDVTLLFGARTQR-DLYALDEIA 150 (227)
T ss_pred EecccchhHHHHHHHHHHh---cC-CCCcEEEEEeeCCHH-HhccHHHHH
Confidence 9999999999999999876 22 457899999999998 999999885
No 73
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.62 E-value=1.3e-15 Score=153.95 Aligned_cols=109 Identities=26% Similarity=0.433 Sum_probs=93.5
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
.+|+|||+|.|....+.++|+|+.+. .|.+|.||++ +++| +.+.|.+|.|.|.++.+..+++||
T Consensus 63 ~~r~ysi~s~~~~~~~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i~gP~G~f~l~~~~~~~~v~ 127 (243)
T cd06216 63 HWRSYSLSSSPTQEDGTITLTVKAQP---------DGLVSNWLVNHLAPG------DVVELSQPQGDFVLPDPLPPRLLL 127 (243)
T ss_pred EEEEEeccCCCcCCCCeEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEECCceeeecCCCCCCCEEE
Confidence 36999999988512578999998742 4889999986 8898 899999999999998765789999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+||||||+++++++... .+ ..++++||||+|+.+ |.+|.+||+
T Consensus 128 iagG~Giap~~s~l~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~ 172 (243)
T cd06216 128 IAAGSGITPVMSMLRTLLA---RG-PTADVVLLYYARTRE-DVIFADELR 172 (243)
T ss_pred EecCccHhHHHHHHHHHHh---cC-CCCCEEEEEEcCChh-hhHHHHHHH
Confidence 9999999999999999875 22 457899999999988 999999985
No 74
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.62 E-value=1.1e-15 Score=154.38 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=92.6
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEE-eeCCCCcCCCC-CCCcEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF-IRPSNFKLPAN-PSVPII 547 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~-~~~~~F~Lp~~-~~~piI 547 (599)
..|+|||+|.+.. +.++|+|+.+. .|.+|+||+++++| +.+.+. +|.|.|.++.. ..+++|
T Consensus 43 ~~R~ySi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~l~~G------d~v~v~~gP~G~f~~~~~~~~~~~v 105 (241)
T cd06195 43 VRRAYSIASAPYE--ENLEFYIILVP---------DGPLTPRLFKLKPG------DTIYVGKKPTGFLTLDEVPPGKRLW 105 (241)
T ss_pred eeecccccCCCCC--CeEEEEEEEec---------CCCCchHHhcCCCC------CEEEECcCCCCceeecCCCCCceEE
Confidence 4599999998853 78999887653 59999999999999 899999 89999998765 458999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|||||||++++++.... + ..++++||||+|+.+ |.+|++||+
T Consensus 106 lIagGtGiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~ 151 (241)
T cd06195 106 LLATGTGIAPFLSMLRDLEIW---E-RFDKIVLVHGVRYAE-ELAYQDEIE 151 (241)
T ss_pred EEeeccchhhHHHHHHHHHhh---C-CCCcEEEEEccCCHH-HhhhHHHHH
Confidence 999999999999999998752 2 457899999999998 999999986
No 75
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.62 E-value=1.8e-15 Score=150.11 Aligned_cols=117 Identities=22% Similarity=0.304 Sum_probs=96.9
Q ss_pred hHHHHHHhcC---CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeC
Q 007547 458 IGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRP 533 (599)
Q Consensus 458 ~~~ll~~l~p---~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~ 533 (599)
.+|++.+-.| ....|+|||+|.|.. .+.++|+|+. .|.+|+||. ++++| +.+.|.+|.
T Consensus 25 pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G------~~v~i~gP~ 86 (216)
T cd06198 25 AGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPG------TRVTVEGPY 86 (216)
T ss_pred CCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCC------CEEEEECCC
Confidence 3444444323 356899999998854 4689999875 478999999 79999 899999999
Q ss_pred CCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 534 ~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.|.++.. .++++|||+||||||+++++++.... + ..++++||||+|+.+ |.+|.+||+
T Consensus 87 G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~ 145 (216)
T cd06198 87 GRFTFDDR-RARQIWIAGGIGITPFLALLEALAAR---G-DARPVTLFYCVRDPE-DAVFLDELR 145 (216)
T ss_pred CCCccccc-CceEEEEccccCHHHHHHHHHHHHhc---C-CCceEEEEEEECCHH-HhhhHHHHH
Confidence 99998866 78999999999999999999998762 2 357899999999998 999999986
No 76
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.61 E-value=1.2e-15 Score=155.45 Aligned_cols=120 Identities=22% Similarity=0.263 Sum_probs=98.4
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCC-
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN- 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~- 535 (599)
..+|++.+-.|....|+|||+|+|.. .+.++|+|+. .|..|+||+++++| +.+.|..|.|.
T Consensus 29 ~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G------~~v~i~gP~G~~ 90 (253)
T cd06221 29 KPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPG------DTVGLRGPFGNG 90 (253)
T ss_pred CCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCC------CEEEEECCcCCC
Confidence 45666665535445699999999864 5789999875 48899999999998 89999999996
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.++....+|+||||+||||||+++++++..++ +...++++|||+.|+.+ |++|++||+
T Consensus 91 f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~---~~~~~~i~Li~~~r~~~-~~~~~~~L~ 149 (253)
T cd06221 91 FPVEEMKGKDLLLVAGGLGLAPLRSLINYILDN---REDYGKVTLLYGARTPE-DLLFKEELK 149 (253)
T ss_pred cccccccCCeEEEEccccchhHHHHHHHHHHhc---cccCCcEEEEEecCChH-HcchHHHHH
Confidence 666643568999999999999999999999873 22357899999999998 999999986
No 77
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.61 E-value=1.6e-15 Score=150.63 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=89.7
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
...|+|||+|+|. .+.++|+|+++. ..|..|.||.++++| +.+.+..|.|.|.++ .|+||
T Consensus 45 ~~~r~ySi~s~~~--~~~l~~~vk~~~--------~~g~~s~~l~~l~~G------~~v~i~gP~G~~~~~----~~~vl 104 (218)
T cd06196 45 DEKRPFTFTSLPE--DDVLEFVIKSYP--------DHDGVTEQLGRLQPG------DTLLIEDPWGAIEYK----GPGVF 104 (218)
T ss_pred ccccccccccCCC--CCeEEEEEEEcC--------CCCcHhHHHHhCCCC------CEEEEECCccceEec----CceEE
Confidence 3579999999985 378999998642 136779999999999 899999999998763 58999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
||+|||||||+++++++.. .+ ...+++||||+|+.+ |++|++||++
T Consensus 105 ia~GtGiaP~~s~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~ 150 (218)
T cd06196 105 IAGGAGITPFIAILRDLAA---KG-KLEGNTLIFANKTEK-DIILKDELEK 150 (218)
T ss_pred EecCCCcChHHHHHHHHHh---CC-CCceEEEEEecCCHH-HHhhHHHHHH
Confidence 9999999999999999886 22 456799999999988 9999999863
No 78
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.60 E-value=2.9e-15 Score=147.94 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=96.5
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCC
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSN 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~ 535 (599)
..+|++.+-.|....|+|||+|.|.. .+.++|+|+.+.. .+.+|.||++ +++| +.+.|.+|.|.
T Consensus 27 ~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~~--------g~~~s~~l~~~~~~G------d~v~i~gP~g~ 91 (211)
T cd06185 27 EPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREPA--------SRGGSRYMHELLRVG------DELEVSAPRNL 91 (211)
T ss_pred CCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEeccC--------CCchHHHHHhcCCCC------CEEEEcCCccC
Confidence 45666666535567899999999864 5889999986420 2347999976 6778 89999999999
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
|.++.+ .+|+||||+||||||+++++++... ...++.||||+|+.+ |.+|.+||++
T Consensus 92 f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~------~~~~v~l~~~~r~~~-~~~~~~~l~~ 147 (211)
T cd06185 92 FPLDEA-ARRHLLIAGGIGITPILSMARALAA------RGADFELHYAGRSRE-DAAFLDELAA 147 (211)
T ss_pred CcCCCC-CCcEEEEeccchHhHHHHHHHHHHh------CCCCEEEEEEeCCCc-chhHHHHHhh
Confidence 988653 6899999999999999999998865 236899999999988 8889999863
No 79
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.60 E-value=1.9e-15 Score=161.32 Aligned_cols=106 Identities=23% Similarity=0.360 Sum_probs=91.0
Q ss_pred CceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCCCCcCCCCC--CCcEE
Q 007547 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNFKLPANP--SVPII 547 (599)
Q Consensus 471 pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~--~~piI 547 (599)
.|+|||+|+|. ++.++|+|+.+. .|.+|+||. ++++| +.+.|..|.|.|.++.+. .+++|
T Consensus 51 ~R~ySi~s~p~--~~~l~i~vk~~~---------~G~~S~~l~~~l~~G------d~v~v~gP~G~f~~~~~~~~~~~~l 113 (352)
T TIGR02160 51 RRSYSICSAPA--PGEIRVAVKKIP---------GGLFSTWANDEIRPG------DTLEVMAPQGLFTPDLSTPHAGHYV 113 (352)
T ss_pred eeeccccCCCC--CCcEEEEEEEeC---------CCcchHHHHhcCCCC------CEEEEeCCceeeecCCCccccccEE
Confidence 58999999884 478999998753 489999997 68999 899999999999887543 37999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|||||||++++++.... + ..++++||||+|+++ |.+|.+||+
T Consensus 114 liagG~GItP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~ 159 (352)
T TIGR02160 114 AVAAGSGITPMLSIAETVLAA---E-PRSTFTLVYGNRRTA-SVMFAEELA 159 (352)
T ss_pred EEeccccHhHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HHHHHHHHH
Confidence 999999999999999998762 2 347899999999988 999999985
No 80
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.60 E-value=1.9e-15 Score=152.01 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=94.3
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCC-
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN- 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~- 535 (599)
-.+|++.+..|....|+|||+|+| +.++|+|+. .|.+|+||+++++| +.+.|..|.|+
T Consensus 25 ~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~G------d~v~i~gP~G~~ 83 (233)
T cd06220 25 KPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEG------DKLGIRGPYGNG 83 (233)
T ss_pred CCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCC------CEEEEECcCCCC
Confidence 456776665355556999999987 678888864 48899999999999 89999999996
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
|.++ .+|+||||+|||||||++++++... . ++++||||+|+++ |.+|++||++
T Consensus 84 f~~~---~~~~vliAgGtGitP~~sil~~~~~------~-~~i~l~~~~r~~~-d~~~~~eL~~ 136 (233)
T cd06220 84 FELV---GGKVLLIGGGIGIAPLAPLAERLKK------A-ADVTVLLGARTKE-ELLFLDRLRK 136 (233)
T ss_pred ccCC---CCeEEEEecCcChHHHHHHHHHHHh------c-CCEEEEEecCChH-HChhHHHHhh
Confidence 8775 5799999999999999999998775 2 6899999999998 9999999974
No 81
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.59 E-value=2.3e-15 Score=150.74 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=100.1
Q ss_pred ChHHHHHHhcCC---CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeC
Q 007547 457 PIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (599)
Q Consensus 457 p~~~ll~~l~p~---l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~ 533 (599)
..+|++.+-.|. ...|+|||+|.+.. .+.++|+|+.+. .|.+|.||+++++| +.+.|..|.
T Consensus 30 ~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~---------~G~~s~~l~~~~~G------~~v~i~gP~ 93 (234)
T cd06183 30 PVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYP---------GGKMSQYLHSLKPG------DTVEIRGPF 93 (234)
T ss_pred CcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECC---------CCcchhHHhcCCCC------CEEEEECCc
Confidence 456666654243 46799999998854 467999987642 59999999999998 899999999
Q ss_pred CCCcCCCCCC-CcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 534 SNFKLPANPS-VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 534 ~~F~Lp~~~~-~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.|.++.+.. .++||||+||||||+++++++.... +....+++||||+|+.+ |.+|.+||+
T Consensus 94 G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~~~~~~i~l~~~~r~~~-~~~~~~~l~ 155 (234)
T cd06183 94 GKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKD---PEDKTKISLLYANRTEE-DILLREELD 155 (234)
T ss_pred cceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhC---cCcCcEEEEEEecCCHH-HhhhHHHHH
Confidence 9998876655 8999999999999999999998762 11357899999999988 889999985
No 82
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.59 E-value=3.1e-15 Score=152.18 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=95.3
Q ss_pred ChHHHHHHhcCCC---CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeC
Q 007547 457 PIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (599)
Q Consensus 457 p~~~ll~~l~p~l---~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~ 533 (599)
..+|++.+-.|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++++| +++.|.+|.
T Consensus 33 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G------~~v~i~gP~ 92 (250)
T PRK00054 33 KPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEG------DELDIRGPL 92 (250)
T ss_pred CCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCC------CEEEEEccc
Confidence 4556655542332 58999999987 4789999875 48899999999999 899999999
Q ss_pred CC-CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 534 SN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 534 ~~-F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
|+ |.++. ..+|+||||+||||||+++++++... . ..++.|+|++|+.+ |++|++||++
T Consensus 93 G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~---~---~~~v~l~~~~r~~~-d~~~~~el~~ 151 (250)
T PRK00054 93 GNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKK---K---GVEVTTVLGARTKD-EVIFEEEFAK 151 (250)
T ss_pred CCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHH---c---CCcEEEEEEcCCHH-HhhhHHHHHh
Confidence 85 88864 56899999999999999999999875 2 25799999999988 9999999874
No 83
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.57 E-value=5.6e-15 Score=154.29 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=93.1
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCC-------
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPAN------- 541 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~------- 541 (599)
...|+||++|+|.. ++.++|+|+.+...........|.+|+||.++++| +.+.|.+|.|.|.++.+
T Consensus 84 ~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~~~~~~~~~~~~ 156 (300)
T PTZ00319 84 TVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLG------DKIEMRGPVGKFEYLGNGTYTVHK 156 (300)
T ss_pred eEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCC------CEEEEEccceeeEecCCcceeecc
Confidence 35799999998853 67899999875211000011259999999999999 89999999998865432
Q ss_pred --------CCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 542 --------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 542 --------~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
...|+||||+|||||||++++++... +.....++.||||+|+.+ |.+|.+||++
T Consensus 157 ~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~---~~~~~~~i~liyg~r~~~-dl~~~~eL~~ 218 (300)
T PTZ00319 157 GKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKK---NKEDRTKVFLVYANQTED-DILLRKELDE 218 (300)
T ss_pred ccccccccccceEEEEecCcccCHHHHHHHHHHh---CCCCCceEEEEEecCCHH-HhhHHHHHHH
Confidence 12589999999999999999998876 221345899999999998 9999999863
No 84
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.57 E-value=1e-14 Score=147.64 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=94.1
Q ss_pred HHHHHHhc---CCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCC
Q 007547 459 GVFFAAVA---PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (599)
Q Consensus 459 ~~ll~~l~---p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~ 535 (599)
+|++.+-. +....|+|||+|.+.. .++++|+|+. .|..|+||.++++| +.+.|.+|.|+
T Consensus 28 GQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G------~~l~i~gP~G~ 89 (243)
T cd06192 28 GQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPG------EKLDVMGPLGN 89 (243)
T ss_pred CCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCC------CEEEEEccCCC
Confidence 44444432 2346799999999854 5789998864 48899999999999 89999999997
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.+..+..++++|||+|||||||++++++... + ..++.||||+|+++ |.+|.+||+
T Consensus 90 ~~~~~~~~~~~lliagGtGiap~~~~l~~~~~---~---~~~v~l~~~~r~~~-d~~~~~el~ 145 (243)
T cd06192 90 GFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAA---N---GNKVTVLAGAKKAK-EEFLDEYFE 145 (243)
T ss_pred CCccCCCCCEEEEEeCcccHHHHHHHHHHHHH---C---CCeEEEEEecCcHH-HHHHHHHHH
Confidence 66554456899999999999999999999875 2 36899999999998 999999985
No 85
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.57 E-value=6.4e-15 Score=147.81 Aligned_cols=107 Identities=24% Similarity=0.318 Sum_probs=91.5
Q ss_pred CceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEE
Q 007547 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (599)
Q Consensus 471 pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImI 549 (599)
.|+|||+|.|.. .+.++|+|+.+. .|.+|+||.+ +++| +.+.|.+|.|.|.++....++++||
T Consensus 50 ~r~ySi~s~~~~-~~~l~l~v~~~~---------~G~~s~~l~~~l~~G------d~v~i~gP~G~~~~~~~~~~~~vli 113 (235)
T cd06217 50 QRSYSIASSPTQ-RGRVELTVKRVP---------GGEVSPYLHDEVKVG------DLLEVRGPIGTFTWNPLHGDPVVLL 113 (235)
T ss_pred eeeecccCCCCC-CCeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEeCCceeeEeCCCCCceEEEE
Confidence 489999999864 468999997642 5889999986 7898 8999999999998865456899999
Q ss_pred eCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+||||||+++++++... .+ ..++++||||+|+.+ |.+|++||+
T Consensus 114 agG~Giap~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~ 157 (235)
T cd06217 114 AGGSGIVPLMSMIRYRRD---LG-WPVPFRLLYSARTAE-DVIFRDELE 157 (235)
T ss_pred ecCcCccHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhHHHHHH
Confidence 999999999999999876 22 457899999999998 889999985
No 86
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.52 E-value=3.3e-14 Score=144.87 Aligned_cols=122 Identities=19% Similarity=0.231 Sum_probs=106.3
Q ss_pred CChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCC
Q 007547 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (599)
Q Consensus 456 ~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~ 535 (599)
..++||+.+..|....|+|||+|.+.. .+.++|.+++.. .|.+|.++..+++| +.+.+.+|.|+
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~~---------~G~~T~~i~~~k~g------d~i~v~GP~G~ 99 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVYE---------VGKVTKYIFGLKEG------DKIRVRGPLGN 99 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEEe---------CChHHHHHhhccCC------CEEEEEcCCCC
Confidence 467888888867789999999999865 566777776654 79999999999999 78999999998
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.+..+..+|+++||+|||+||+++++++... ++ ...+++++||.|++. |.++.+||+
T Consensus 100 ~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~---~~-~~~~V~~~~G~~~~~-dl~~~~el~ 157 (252)
T COG0543 100 GFLREKIGKPVLLIAGGTGIAPLYAIAKELKE---KG-DANKVTLLYGARTAK-DLLLLDELE 157 (252)
T ss_pred CccccccCCcEEEEecccCHhHHHHHHHHHHh---cC-CCceEEEEEeccChh-hcccHHHHH
Confidence 87777778889999999999999999999887 45 568999999999999 999999986
No 87
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.51 E-value=1.8e-13 Score=128.18 Aligned_cols=143 Identities=15% Similarity=0.278 Sum_probs=91.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecC-CCCCCChhHH--
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATY-GDGEPTDNAA-- 159 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTy-G~G~~p~na~-- 159 (599)
|+++.|+|.|+||||++|+++|...+.+...+..+..+++.++..++ -..+.....+|+++||| |.|.+|+++.
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~---~~~~~~~~p~vli~pTY~~gG~~~~~~~~~ 77 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHET---TDFFPETEPFVAFLPTYLEGGNGIDNGDVE 77 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCcc---ccccccCCCEEEEEeeecCCCCCcccCccc
Confidence 36799999999999999999998876542102223345655553211 01145667899999999 8886655332
Q ss_pred ----HHHHHHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHH
Q 007547 160 ----RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWREL 234 (599)
Q Consensus 160 ----~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~ 234 (599)
...++|.... .++..++|||+||++| +.||.+++++++.+ +.-.++..-+ -.-+.+-+.+..+.++
T Consensus 78 ~vp~~v~dFL~~~~-----N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~vP~L~~fEl-~GT~~Dv~~v~~~~~~ 148 (154)
T PRK02551 78 ILTTPLGDFIAYHD-----NAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GFPMLADFEL-RGTPSDIERIAAIIAE 148 (154)
T ss_pred cchHHHHHHHcchh-----hhhheEEEEeecccHHHHHHHHHHHHHHHHc---CCCEEEEeec-cCCHHHHHHHHHHHHH
Confidence 2333443222 4578999999999999 89999999999864 6655544321 1111233444455555
Q ss_pred HHH
Q 007547 235 VWP 237 (599)
Q Consensus 235 l~~ 237 (599)
+|.
T Consensus 149 ~~~ 151 (154)
T PRK02551 149 LYA 151 (154)
T ss_pred HHH
Confidence 443
No 88
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.51 E-value=5.8e-14 Score=145.35 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=91.7
Q ss_pred hHHHHHHhcCC-CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEE-EEEeeCCC
Q 007547 458 IGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRPSN 535 (599)
Q Consensus 458 ~~~ll~~l~p~-l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~i~~~~~~ 535 (599)
.+||+.+-.+. ..+|+|||+|.+.. .+.++|+|+. .|..|.||.++++| +.+ .|.+|.|+
T Consensus 30 pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~G------d~v~~i~GP~G~ 91 (281)
T PRK06222 30 PGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEG------DSILDVVGPLGK 91 (281)
T ss_pred CCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCC------CEEeeEEcCCCC
Confidence 34444443232 23589999997743 5789999876 58999999999999 899 79999997
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|..+. ..+|+|+||+|+||||+++++++... ++ .+++||||.|+++ |.+|.+||+
T Consensus 92 ~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~---~~---~~v~l~~g~r~~~-d~~~~~el~ 146 (281)
T PRK06222 92 PSEIE-KFGTVVCVGGGVGIAPVYPIAKALKE---AG---NKVITIIGARNKD-LLILEDEMK 146 (281)
T ss_pred CcccC-CCCeEEEEeCcCcHHHHHHHHHHHHH---CC---CeEEEEEecCCHH-HhhcHHHHH
Confidence 65543 35799999999999999999998764 22 4799999999998 999999985
No 89
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.51 E-value=2.1e-13 Score=125.33 Aligned_cols=124 Identities=19% Similarity=0.296 Sum_probs=90.4
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCC----CCCChhHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGD----GEPTDNAAR 160 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~----G~~p~na~~ 160 (599)
.+.|+|.|.||||+++|++|... ...+++++.+ . +..+..+++++||||+ |+.|+.+.+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~---------~~~i~i~~~~--~------~~~~~~~~lv~PTy~~g~~~G~vP~~v~~ 64 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLP---------ATRIPINERE--R------LEVDEPYILITPTYGGGGTAGAVPKQVIR 64 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCc---------ceEEecCCCc--c------ccCCCCEEEEEeccCCCCcCCcccHHHHH
Confidence 57999999999999998888543 1245555421 2 5566789999999999 699999999
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHH
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWP 237 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~ 237 (599)
|++...+ ....++|||+||++| +.||.+++.+.+++. ...+.. -+....+.+.+.+.+|.+++|.
T Consensus 65 Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~l~k-~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 65 FLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPLLYR-FELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred HHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCeEEE-EecCCCHHHHHHHHHHHHHHHh
Confidence 9887443 346899999999999 889999999999975 222221 1112111345666778887765
No 90
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.50 E-value=6.9e-14 Score=142.15 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=92.1
Q ss_pred hHHHHHHhcC-CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEE-EEEeeCCC
Q 007547 458 IGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRPSN 535 (599)
Q Consensus 458 ~~~ll~~l~p-~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~i~~~~~~ 535 (599)
.+|++.+-.+ ....|+|||+|.|.. .+.++|+|+. .|..|.+|.++++| +.+ .+..|.|+
T Consensus 29 pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G------~~v~~i~gP~G~ 90 (248)
T cd06219 29 PGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEG------DKIHDVVGPLGK 90 (248)
T ss_pred CCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCC------CEeeeeecCCCC
Confidence 4555444312 235689999998743 5789988865 48889999999998 788 69999998
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.+.. ..+|+||||+||||||+++++++... . ..++.||||+|+.+ |++|.+||+
T Consensus 91 ~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~---~---~~~v~l~~~~r~~~-~~~~~~el~ 145 (248)
T cd06219 91 PSEIE-NYGTVVFVGGGVGIAPIYPIAKALKE---A---GNRVITIIGARTKD-LVILEDEFR 145 (248)
T ss_pred CeecC-CCCeEEEEeCcccHHHHHHHHHHHHH---c---CCeEEEEEEcCCHH-HhhhHHHHH
Confidence 76543 36799999999999999999999765 2 25899999999998 999999986
No 91
>PRK05802 hypothetical protein; Provisional
Probab=99.49 E-value=7.4e-14 Score=146.98 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=89.0
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCC--CCcCC---CCCC
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS--NFKLP---ANPS 543 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~--~F~Lp---~~~~ 543 (599)
...|+|||+|++.. .+.++|+|++ .|..|++|.++++| +.+.|.+|.| .|.++ ....
T Consensus 111 ~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~G------d~l~v~GP~GnG~F~l~~~~~~~~ 172 (320)
T PRK05802 111 FFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKG------DEILLRGPYWNGILGLKNIKSTKN 172 (320)
T ss_pred EeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCC------CEEEEeCCCCcCcCCcccccccCC
Confidence 45699999999854 5789999976 59999999999999 8999999985 47664 3345
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 544 VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 544 ~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+++++||+|+||||+++++++... ++ .+++||||.|+++ |.+|++||+
T Consensus 173 ~~~llIaGGiGIaPl~~l~~~l~~---~~---~~v~li~g~r~~~-~~~~~~el~ 220 (320)
T PRK05802 173 GKSLVIARGIGQAPGVPVIKKLYS---NG---NKIIVIIDKGPFK-NNFIKEYLE 220 (320)
T ss_pred CeEEEEEeEEeHHHHHHHHHHHHH---cC---CcEEEEEeCCCHH-HHHHHHHHH
Confidence 799999999999999999998875 22 4799999999998 999999985
No 92
>PRK06242 flavodoxin; Provisional
Probab=99.46 E-value=4.1e-13 Score=125.63 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=88.4
Q ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 84 TKVTVFYGTQ-TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 84 ~~v~I~YgSq-tGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|+++|+|.|+ ||||+++|+.|++.+. ++++++.+....+ +.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~~~------~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNPED------LSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCccc------HhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5789999999 7999999999999883 4567777766555 88999999999999 788899999998
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
+.+.. ++++++++||.+....+ ...+.+.+.|+++|++.+...
T Consensus 67 ~~~~~-------~~~k~~~~f~t~g~~~~---~~~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLPP-------VSGKKAFIFSTSGLPFL---KYHKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhhh-------hcCCeEEEEECCCCCcc---hHHHHHHHHHHHCCCEEEEEE
Confidence 88753 57899999995433322 237899999999999988764
No 93
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.46 E-value=2.3e-13 Score=139.11 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=97.4
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
+--|+||=.|++.. .+.+++.|++.. .|.+|.||.+++.| |+|.+++|.|+|.+.+...+.+.|
T Consensus 98 ~vvRpYTPvs~~~~-~g~~~l~VK~Y~---------~G~mS~~l~~LkiG------d~ve~rGP~G~~~~~~~~~~~l~m 161 (286)
T KOG0534|consen 98 LVVRPYTPVSLDDD-KGYFDLVVKVYP---------KGKMSQHLDSLKIG------DTVEFRGPIGEFKYDPQKAKHLGM 161 (286)
T ss_pred EEEEecCCccCccc-cceEEEEEEecc---------CCcccHHHhcCCCC------CEEEEecCccceEecCCCcceEEE
Confidence 34799999998865 688999987743 59999999999999 899999999999888777899999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||+||||||+...+|+.+.. .....+++|+|++++++ |.++++||+
T Consensus 162 iAgGtGItPmlqii~~il~~---~~d~tki~lly~N~te~-DILlr~eL~ 207 (286)
T KOG0534|consen 162 IAGGTGITPMLQLIRAILKD---PEDTTKISLLYANKTED-DILLREELE 207 (286)
T ss_pred EecccchhhHHHHHHHHhcC---CCCCcEEEEEEecCCcc-ccchHHHHH
Confidence 99999999999999999973 33467899999999999 999999985
No 94
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.44 E-value=3.4e-13 Score=133.02 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=90.4
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
.+.|+|||+|++....+.++|+|+.. .|.+|.++.++........++.+.|.+|.|.|..+.....++||
T Consensus 42 ~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~GP~G~~~~~~~~~~~~vl 111 (210)
T cd06186 42 WQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVEGPYGSSSEDLLSYDNVLL 111 (210)
T ss_pred cccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEECCCCCCccChhhCCeEEE
Confidence 37899999999864357899999763 38888888877620000112789999999988755455689999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcc-cchHHhhc
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMV-RIFCYLLQ 598 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D-~ly~~El~ 598 (599)
||+||||||+++++++......+.....++.|+|++|+.+ | ..|.+||+
T Consensus 112 iagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~ 161 (210)
T cd06186 112 VAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELR 161 (210)
T ss_pred EeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHH
Confidence 9999999999999999887432111357899999999998 6 57999885
No 95
>PLN02252 nitrate reductase [NADPH]
Probab=99.44 E-value=3.1e-13 Score=158.41 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=98.8
Q ss_pred ChHHHHHHhcC---CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeC
Q 007547 457 PIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (599)
Q Consensus 457 p~~~ll~~l~p---~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~ 533 (599)
+.+|++.+-.+ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++++| +.|.|.+|.
T Consensus 666 ~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vG------d~V~V~GP~ 738 (888)
T PLN02252 666 PVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIG------DTIDVKGPL 738 (888)
T ss_pred CCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCC------CEEEEecCc
Confidence 45555544311 234699999999854 57899999886211101112359999999999999 899999999
Q ss_pred CCCc--------CCCC--CCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 534 SNFK--------LPAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 534 ~~F~--------Lp~~--~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.|. ++.+ ..++++|||+|||||||+++|++.+.. .....+++||||+|+.+ |++|++||+
T Consensus 739 G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~---~~d~t~i~Liyg~Rt~~-Dil~~eEL~ 809 (888)
T PLN02252 739 GHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD---PEDKTEMSLVYANRTED-DILLREELD 809 (888)
T ss_pred cceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc---cCCCCcEEEEEEECCHH-HhhHHHHHH
Confidence 8763 3322 247999999999999999999998762 22457899999999998 999999985
No 96
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.36 E-value=7.9e-13 Score=131.74 Aligned_cols=118 Identities=17% Similarity=0.267 Sum_probs=101.2
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImI 549 (599)
.-|.||+||-|.+ .+.|.+-|++...+..++..-.|+||+|+.++++| |+|.|++|.|.|... +.++|+|+|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpG------DKvtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPG------DKVTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCC------CeEEEeccchhhhhc-cCCCceEEE
Confidence 4589999999976 68899999987655445567789999999999999 899999999987654 568999999
Q ss_pred eCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
++|.|.||+||-+-..+.+.. ..+++.+.||.|+.. +.+|++|++|
T Consensus 282 gGGAGmapmRSHIfDqL~rlh---SkRkis~WYGARS~r-E~fY~Ed~d~ 327 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLH---SKRKISFWYGARSLR-EMFYQEDFDQ 327 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhc---ccceeeeeeccchHH-HhHHHHHHHH
Confidence 999999999999988876443 468999999999998 8899999764
No 97
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.33 E-value=2e-12 Score=130.38 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=85.7
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piIm 548 (599)
...|.|||+|.+.. .++++|.|+.+. ..|.+|+||.++++| +.|.|..|.|.|.++. ..++++|
T Consensus 62 ~~~R~YSi~~~~~~-~~~l~~~v~~~~--------~~G~~s~~l~~l~~G------d~v~v~gP~G~~~~~~-~~~~~vl 125 (235)
T cd06193 62 PVMRTYTVRRFDPE-AGELDIDFVLHG--------DEGPASRWAASAQPG------DTLGIAGPGGSFLPPP-DADWYLL 125 (235)
T ss_pred CcCcccceeEEcCC-CCEEEEEEEeCC--------CCCchHHHHhhCCCC------CEEEEECCCCCCCCCC-CcceEEE
Confidence 45699999998753 578999987642 138999999999999 8999999999998864 4679999
Q ss_pred EeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHh
Q 007547 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYL 596 (599)
Q Consensus 549 Ig~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~E 596 (599)
||+||||||+++++++... . .++.+|||+|+++ |.++.++
T Consensus 126 ia~GtGi~p~~~il~~~~~------~-~~~~~~~~~~~~~-d~~~l~~ 165 (235)
T cd06193 126 AGDETALPAIAAILEELPA------D-ARGTALIEVPDAA-DEQPLPA 165 (235)
T ss_pred EeccchHHHHHHHHHhCCC------C-CeEEEEEEECCHH-HccccCC
Confidence 9999999999999997653 2 5899999999986 6555544
No 98
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.33 E-value=2.1e-11 Score=120.09 Aligned_cols=128 Identities=18% Similarity=0.085 Sum_probs=96.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-hhCCCeEEEEeCCCCCCCch--------------HHHhhhccCCeEEEEee
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKA-RYEKAAVKVVDLDDYAMDDE--------------QYEEKLKKETLAFFMVA 147 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~-~~~g~~v~v~dl~d~~~~~~--------------~~~~~l~~~~~vif~~s 147 (599)
|++|+|+|+|++|+|+++|+.+++.+.+ . |++++++++.+....+. .-..++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~--G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVA--GAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcC--CcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 3589999999999999999999999987 6 89999999865332210 00456888999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 148 TyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
|| .|.+|..+..|++++...... ..+++|.+++|+...+..+---...+.+...|..+|+..+.+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~~-~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~ 143 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWAK-GALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGL 143 (200)
T ss_pred cc-CCCchHHHHHHHHHhcccccc-CCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCC
Confidence 99 999999999999998654211 238899999999533222222345566666778899987653
No 99
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.33 E-value=2.4e-11 Score=119.44 Aligned_cols=126 Identities=19% Similarity=0.086 Sum_probs=95.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHH----------------HhhhccCCeEEEEee
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQY----------------EEKLKKETLAFFMVA 147 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~----------------~~~l~~~~~vif~~s 147 (599)
.+|+|+|+|+||+|+++|+.+++.+.+. +|++++++++.+...++ + ..++..++.+||++|
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~-~g~ev~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSP 77 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREV-DGAEVVVKRVPETVPEE--VAEKSHGKTDQTAPVATPQELADYDAIIFGTP 77 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhc-CCCEEEEEeccccCcHH--HHHhccCCcccCCccCCHHHHHHCCEEEEEec
Confidence 3799999999999999999999999752 27889999986643321 1 144778999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 148 TyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
|| .|.++..+..|++++...... ..+.+|.+++|+.+....+-...+...+...|..+|+..+..
T Consensus 78 ty-~g~~~~~lk~fld~~~~~~~~-~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~ 142 (197)
T TIGR01755 78 TR-FGNMASQMRNFLDQTGGLWAS-GALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL 142 (197)
T ss_pred cc-ccCccHHHHHHHHhccccccc-cccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence 99 899999999999998754211 238899999999543333334455566777778999977653
No 100
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.31 E-value=4.1e-12 Score=154.36 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=96.2
Q ss_pred ChHHHHHHhcC---CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeC
Q 007547 457 PIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (599)
Q Consensus 457 p~~~ll~~l~p---~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~ 533 (599)
.++|++.+-.+ ...-|+|||+|.|.. ++.++|+|+. ..|.+|+||+++++| +.|.|..+.
T Consensus 949 ~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~----------~~G~~S~~L~~l~~G------d~v~v~gp~ 1011 (1167)
T PTZ00306 949 TLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARG----------DKGTLKEWISALRPG------DSVEMKACG 1011 (1167)
T ss_pred CCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEc----------CCChhHHHHhhCCCC------CEEEEeCCc
Confidence 56777776522 123499999999853 5789988853 158999999999999 899998854
Q ss_pred C----------CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 534 S----------NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 534 ~----------~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
| .|.++.+..+|+||||+|||||||++++++..... +.....+++||||+|+.+ |.+|++||+
T Consensus 1012 G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~-~~~~~~~i~Llyg~r~~~-dl~~~~eL~ 1084 (1167)
T PTZ00306 1012 GLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKP-YVDSIESIRLIYAAEDVS-ELTYRELLE 1084 (1167)
T ss_pred CccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCc-ccCCCceEEEEEEeCCHH-HhhHHHHHH
Confidence 4 46666666689999999999999999999887521 001246899999999998 999999986
No 101
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.30 E-value=2.4e-11 Score=117.44 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=76.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
|+++|+|+|.||||+++|+.|++.|.. |+.++++++++.+..+ +.+++.+||++||| .|.++..+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~---g~~v~~~~~~~~~~~~------l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE---GIQCDVVNLHRIEEPD------LSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC---CCeEEEEEhhhcCccC------HHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 579999999999999999999999973 5778999999877666 88999999999999 8889999999987
Q ss_pred HHhcCCCCCCCCCCcEEEEEeec
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLG 186 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlG 186 (599)
..... |+++++++|++|
T Consensus 71 ~~~~~------l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHATQ------LNQMPSAFFSVN 87 (177)
T ss_pred HHHHH------hCCCeEEEEEec
Confidence 65432 889999999988
No 102
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.28 E-value=8.7e-12 Score=145.82 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=93.9
Q ss_pred hHHHHHHhcCC-CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEE-EEEeeCCC
Q 007547 458 IGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRPSN 535 (599)
Q Consensus 458 ~~~ll~~l~p~-l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~i~~~~~~ 535 (599)
.+||+.+-.+. ..+|+|||+|.+.. .+.++|+|++ .|..|.||+++++| +.+ .|.+|.|+
T Consensus 30 pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~-----------vG~~T~~L~~l~~G------d~v~~v~GP~G~ 91 (752)
T PRK12778 30 PGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQE-----------VGLSTTKLCELNEG------DYITDVVGPLGN 91 (752)
T ss_pred CCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEE-----------cCchHHHHhcCCCC------CEeCeEeCCCCC
Confidence 45555543232 24689999998854 5789999976 48999999999999 899 79999998
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.++.. .++++|||+|+||||+++++++... ++ .+++||||.|+.+ |++|.+||+
T Consensus 92 ~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~---~~---~~v~l~~g~r~~~-~l~~~~el~ 146 (752)
T PRK12778 92 PSEIEN-YGTVVCAGGGVGVAPMLPIVKALKA---AG---NRVITILGGRSKE-LIILEDEMR 146 (752)
T ss_pred CccCCC-CCeEEEEECCEeHHHHHHHHHHHHH---CC---CeEEEEeccCCHH-HhhhHHHHH
Confidence 876533 4799999999999999999998775 23 4899999999998 999999985
No 103
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.1e-11 Score=127.96 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=90.8
Q ss_pred CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcE
Q 007547 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (599)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~pi 546 (599)
.+.|.+||||++.. .++++++|+. .|-.|.-|.+ +++| +++.+.+|.|.|......+. -
T Consensus 259 ~~~~HPFTIa~s~~--~sel~FsIK~-----------LGD~Tk~l~dnLk~G------~k~~vdGPYG~F~~~~g~~~-Q 318 (438)
T COG4097 259 RMRPHPFTIACSHE--GSELRFSIKA-----------LGDFTKTLKDNLKVG------TKLEVDGPYGKFDFERGLNT-Q 318 (438)
T ss_pred cCCCCCeeeeeCCC--CceEEEEehh-----------hhhhhHHHHHhccCC------ceEEEecCcceeecccCCcc-c
Confidence 46789999999975 3478888876 6888999988 9999 89999999999988755433 8
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 547 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 547 ImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.||+|.|||||+||+++....+ ...++.|||.||+.+ |-+|.+||+
T Consensus 319 VWIAGGIGITPFis~l~~l~~~~----s~~~V~L~Y~~~n~e-~~~y~~eLr 365 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAERK----SDPPVHLFYCSRNWE-EALYAEELR 365 (438)
T ss_pred EEEecCcCcchHHHHHHhhcccc----cCCceEEEEEecCCc-hhHHHHHHH
Confidence 89999999999999999987632 457999999999999 889999986
No 104
>PLN02631 ferric-chelate reductase
Probab=99.22 E-value=3.7e-11 Score=136.89 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPII 547 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piI 547 (599)
.+.|+|||+|+|...++.++++|+. .|..|++|.+ +..++ +..++.+.+|.|.|..+.....++|
T Consensus 351 ~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g---~~i~V~VeGPYG~~~~~~~~~~~vV 416 (699)
T PLN02631 351 LQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSI---DSLEVSTEGPYGPNSFDVSRHNSLI 416 (699)
T ss_pred cceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCC---CeeEEEEECCCCCCCCCcCCCCcEE
Confidence 5779999999986556789999875 5888999987 43321 1146777789997766655567999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcC-CCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g-~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|+||||+++++++...+..++ ...+++.|+||.|+.+ |.+|.||++
T Consensus 417 lIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~ 467 (699)
T PLN02631 417 LVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIF 467 (699)
T ss_pred EEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHh
Confidence 9999999999999999998642221 1235899999999998 999999986
No 105
>PLN02292 ferric-chelate reductase
Probab=99.13 E-value=2.1e-10 Score=131.08 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=87.8
Q ss_pred CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhc-CCCCCCCCceEEEEEeeCCCCcCCCCCCCcE
Q 007547 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (599)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~pi 546 (599)
..+.|+|||+|+|...+++++++|+. .|-.|++|.+. +.|+ +....++.+.+|.|.+..+.....++
T Consensus 367 ~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd-~i~~~~V~VeGPYG~~~~~~~~~~~v 434 (702)
T PLN02292 367 KLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSD-QIDRLAVSVEGPYGPASTDFLRHESL 434 (702)
T ss_pred ccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCC-ccccceEEEECCccCCccccccCCcE
Confidence 35789999999985456789999875 57788989884 5551 21123677889999776544445799
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhhcC-CCCCCEEEEEeccCCCcccchHHhh
Q 007547 547 IMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMVRIFCYLL 597 (599)
Q Consensus 547 ImIg~GTGIAPfrsflqer~~~~~~g-~~~g~~~Lf~G~R~~~~D~ly~~El 597 (599)
+|||+|+||||+++++++..+...++ ....++.|+|+.|+++ |.++.+++
T Consensus 435 vlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l 485 (702)
T PLN02292 435 VMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLI 485 (702)
T ss_pred EEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHH
Confidence 99999999999999999987632111 1236899999999998 98887654
No 106
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.12 E-value=1.1e-10 Score=138.74 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=90.9
Q ss_pred ChHHHHHHhcC-CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEE-EEeeCC
Q 007547 457 PIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP-IFIRPS 534 (599)
Q Consensus 457 p~~~ll~~l~p-~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~-i~~~~~ 534 (599)
-.+||+.+..+ ....|+|||+|.+.. .+.++|+|+. .|..|.+|.++++| +.+. |.+|.|
T Consensus 678 ~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~-----------vG~~T~~L~~lk~G------d~l~~I~GPlG 739 (944)
T PRK12779 678 QAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQG-----------MGTSSLEINRMAIG------DAFSGIAGPLG 739 (944)
T ss_pred CCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEe-----------eccHHHHHhcCCCc------CEEeeeecCCC
Confidence 46777776522 234599999998743 5789999865 48889999999999 8994 999999
Q ss_pred CC-cCCC-CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhh
Q 007547 535 NF-KLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLL 597 (599)
Q Consensus 535 ~F-~Lp~-~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El 597 (599)
+| .++. ...++++|||+|+||||+++++++... ++ .+++||||+|+++ |.+|.+++
T Consensus 740 ~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~---~g---~~V~li~G~Rs~e-dl~~~del 797 (944)
T PRK12779 740 RASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLR---LG---NHVTLISGFRAKE-FLFWTGDD 797 (944)
T ss_pred CCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHH---CC---CCEEEEEEeCCHH-HhhhHHHH
Confidence 76 4443 234799999999999999999998765 22 5799999999987 88877654
No 107
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.08 E-value=5.6e-10 Score=127.95 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=85.9
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cC----CCCCCCCceEEEEEeeCCCCcCCCCCC
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI----PLEGNGDCSWAPIFIRPSNFKLPANPS 543 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~----~g~~~~~~~~v~i~~~~~~F~Lp~~~~ 543 (599)
.+.|+|||+|+|...++.++++|++ .|-.|+.|.+ +. ++..+..+.++.|.+|.|.|.++....
T Consensus 355 ~q~HPFSIaS~p~~~~~~l~~~IK~-----------~gG~T~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~ 423 (722)
T PLN02844 355 FQWHPFSITSSSNIDDHTMSVIIKC-----------EGGWTNSLYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRY 423 (722)
T ss_pred eeEEEEEeecCCCCCCCeEEEEEEe-----------CCCchHHHHHHHHhhccCCCCcccceEEEEECCccCCCCCccCC
Confidence 4679999999886556788988876 2334555544 22 221111224788899999887665555
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHhhcC-CCCCCEEEEEeccCCCcccchHHhhc
Q 007547 544 VPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 544 ~piImIg~GTGIAPfrsflqer~~~~~~g-~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
++++|||+|||||||++++++...+.+.. ....++.|+|++|+.+ |..|.+|+.
T Consensus 424 ~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~ 478 (722)
T PLN02844 424 DSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPIS 478 (722)
T ss_pred CeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHH
Confidence 89999999999999999999998632111 1236899999999998 999999874
No 108
>PRK07116 flavodoxin; Provisional
Probab=99.07 E-value=1.4e-09 Score=103.38 Aligned_cols=133 Identities=16% Similarity=0.167 Sum_probs=87.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-----------------------hHHHhhhccC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------------------EQYEEKLKKE 139 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-----------------------~~~~~~l~~~ 139 (599)
+|+++|+|.|.||||+.+|+.|++.+... . .++.+...|+..+ .....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d--~--~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGAD--L--FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCC--e--EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 67899999999999999999999998643 2 2333333222100 0012346788
Q ss_pred CeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEee-cCcchhHHHHHHHHHHHHHHHCCCeEEecceee
Q 007547 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (599)
Q Consensus 140 ~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~ 218 (599)
+.++|++|+| .|.+|..+..|++.+ . ++++++++|+. |.+.+ +.+...+.+.+.+.+ +.+--..
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~---~-----l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~~---~~~~~~~ 142 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY---D-----FSGKTVIPFATSGGSGI---GNAEKELKKSYPDAN---WKEGRLL 142 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc---C-----CCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcCc---cccCeee
Confidence 9999999999 688888888887653 2 78999999997 54443 455556665543322 2221111
Q ss_pred cCCCCcHHHHHHHHHHH
Q 007547 219 DDDQCIEDDFTAWRELV 235 (599)
Q Consensus 219 D~~~~~e~~~~~W~~~l 235 (599)
+ ....++++.+|.+++
T Consensus 143 ~-~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 143 N-GGASKEEIKEWINKL 158 (160)
T ss_pred c-CCCcHHHHHHHHHHc
Confidence 2 123467899998754
No 109
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.04 E-value=2e-09 Score=100.27 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=69.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCC--CCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHH
Q 007547 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY--AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (599)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~--~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~ 164 (599)
+|+|.|.||||+++|+.|++.|.+. +..+|+.+. +..+ +.+++.|||++|+| .|.++..+.+|++.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~-----~~~v~~~~~~~~~~~------~~~yD~vi~gspiy-~g~~~~~~~~fi~~ 68 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEE-----GELVDLEKVEEDEPD------LSDYDAVIFGSPIY-AGRIPGEMREFIKK 68 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhh-----ccEEEHHhhhhcccc------cccCCEEEEEEEEE-CCcCCHHHHHHHHH
Confidence 5899999999999999999999876 445566664 2333 88999999999999 79999999999998
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCc
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNR 188 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds 188 (599)
+... ++++++++|..|-.
T Consensus 69 ~~~~------l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 69 NKDN------LKNKKVALFSVGGS 86 (143)
T ss_pred HHHH------HcCCcEEEEEEeCC
Confidence 7543 78899999997644
No 110
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.02 E-value=7.9e-10 Score=132.44 Aligned_cols=115 Identities=14% Similarity=0.069 Sum_probs=89.0
Q ss_pred hHHHHHHhcC-CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHH-hhcCCCCCCCCceEE-EEEeeCC
Q 007547 458 IGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWA-PIFIRPS 534 (599)
Q Consensus 458 ~~~ll~~l~p-~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L-~~l~~g~~~~~~~~v-~i~~~~~ 534 (599)
.+||+.+-.+ ...+|+|||++.+.. .+.|+|.+++ .|..|.|| .++++| +.+ .+.+|.|
T Consensus 30 PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~G------d~l~~v~GPlG 91 (1006)
T PRK12775 30 PGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAG------DTFEDFVGPLG 91 (1006)
T ss_pred CCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCC------CEEeeeecCCC
Confidence 3555544322 224689999987743 5778888865 58999998 579999 788 7999999
Q ss_pred CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 ~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.|.... ..+++++||+|+||||+++++++... .| .+++++||.|+++ +.+|.+||+
T Consensus 92 ~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~---~g---~~v~li~g~R~~~-~l~~~del~ 147 (1006)
T PRK12775 92 LPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKE---AG---ARTTGIIGFRNKD-LVFWEDKFG 147 (1006)
T ss_pred CCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHh---CC---CcEEEEEeCCChH-HcccHHHHH
Confidence 664332 24799999999999999999998654 33 5699999999988 999999985
No 111
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=98.96 E-value=3.1e-09 Score=95.85 Aligned_cols=115 Identities=23% Similarity=0.368 Sum_probs=71.3
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCC----CChhHHHHHH
Q 007547 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGE----PTDNAARFYK 163 (599)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~----~p~na~~F~~ 163 (599)
|+|.|.||||++|+++|...+.+ .-+.+...+.. +.-....|+++||||.|+ .|....+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~-------~~i~~~~~~~~-------~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPA-------IRIPIREISPD-------LEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SE-------EEE-SSCTTST-------S--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchh-------ccccccccccc-------ccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 79999999999999998765432 11223322211 344567999999999999 9999998988
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHH
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
+-.. +..-.+|+|.||++| ..||.+++.+.+++ +.-.++.. +..+.++|++.-
T Consensus 67 ~~~N--------~~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~VPll~kf----El~Gt~~Dv~~v 120 (122)
T PF07972_consen 67 NPDN--------RKLLRGVIGSGNRNFGDNFCLAADKIAEKY---GVPLLYKF----ELSGTPEDVERV 120 (122)
T ss_dssp SHHH--------GGGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T--EEEEE----ETT--HHHHHHH
T ss_pred HHHH--------HhhheeEEecCCcHHHHHHHHHHHHHHHHc---CCCEEEEE----ecCCCHHHHHHH
Confidence 6554 346789999999999 88999999999876 55444432 122445555443
No 112
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.88 E-value=2.9e-08 Score=92.94 Aligned_cols=125 Identities=21% Similarity=0.250 Sum_probs=99.5
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCC---------------CCchHHHhhhccCCeEEEEe
Q 007547 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYA---------------MDDEQYEEKLKKETLAFFMV 146 (599)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~---------------~~~~~~~~~l~~~~~vif~~ 146 (599)
|||+|++||.. |+|+.+|+.+++.+.+. |++++++++.++. .+-+++.+++...+.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~--g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA--GAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT--TEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc--CCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 99999999999999988 8999999999861 11134566788899999999
Q ss_pred ecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 147 sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
|+| .|.+|.-++.|++++.. .....+++|.+++++.|.+..+ ...+...+...|..+|+..+..
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g-~~~~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRG-GLRALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSST-THHHHHHHHHHHHHTTBEEECC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcH-HHHHHHHHHHHHHHCCCEEcCC
Confidence 999 99999999999999972 0112389999999988755443 2446678888888899987755
No 113
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=98.86 E-value=2.2e-09 Score=94.47 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=42.2
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|||||||++++++.... + ..++++||||+|+.+ |++|++||+
T Consensus 1 lIagGtGIaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~ 46 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER---N-DNRKVTLFYGARTPE-DLLFRDELE 46 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH---T-CTSEEEEEEEESSGG-GSTTHHHHH
T ss_pred CeecceeHHHHHHHHHHHHHh---C-CCCCEEEEEEEcccc-cccchhHHH
Confidence 899999999999999999974 2 568999999999999 999999985
No 114
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.85 E-value=2.3e-08 Score=90.27 Aligned_cols=128 Identities=19% Similarity=0.305 Sum_probs=88.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCC----CCChhHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDG----EPTDNAAR 160 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G----~~p~na~~ 160 (599)
.+.|+|.|.||||.+|.++|. +. .+.+.+....+- +.-....|+++||||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~----~~~I~~~~~~~~----------~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LP----AVRIPLNREEDP----------IEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CC----ceecccccccCC----------ccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 578999999999999999987 11 222333322221 33345789999999999 88888776
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHH
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPEL 239 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L 239 (599)
|+.. .. .+++.-+|.|.||++| ..||.+++.+.+++ |.-.++..-+.- ...+-..+++|..++|+..
T Consensus 66 FLn~---~~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FEL~G-T~~Dv~~v~~~v~~~~~~~ 133 (141)
T COG1780 66 FLNN---EH-----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFELLG-TAEDVAAVRKGVTEFWKRA 133 (141)
T ss_pred Hhcc---cc-----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEeccC-CHHHHHHHHHHHHHHHHhC
Confidence 6543 22 3568899999999999 78999999998765 665555432221 1123466777888887754
Q ss_pred H
Q 007547 240 D 240 (599)
Q Consensus 240 ~ 240 (599)
.
T Consensus 134 ~ 134 (141)
T COG1780 134 P 134 (141)
T ss_pred C
Confidence 3
No 115
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.72 E-value=6.9e-08 Score=91.66 Aligned_cols=94 Identities=28% Similarity=0.393 Sum_probs=73.2
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHh
Q 007547 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (599)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~ 166 (599)
+|+|.|.||||+++|+.|++.|.. ..++++++.... +.+++++++|+.+| .|.+++.+++|++.
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~~-------~~~yD~i~lG~w~d-~G~~d~~~~~fl~~-- 64 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPED-------LEDYDLIFLGFWID-KGTPDKDMKEFLKK-- 64 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEeccccccC-------CCCCCEEEEEcCcc-CCCCCHHHHHHHHH--
Confidence 489999999999999999998852 356777776542 57889999999999 89999999988766
Q ss_pred cCCCCCCCCCCcEEEEEeec----CcchhHHHHHHHHHHHHHHH
Q 007547 167 EGNDRGPWLQQLKFGVFGLG----NRQYEHFNKIGIVLDEELCK 206 (599)
Q Consensus 167 ~~~~~~~~l~~~~~aVFGlG----ds~Y~~f~~~~k~ld~~L~~ 206 (599)
++|+++++||.- ++ +++..+.+.+.+.+.+
T Consensus 65 --------l~~KkV~lF~T~G~~~~s--~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 65 --------LKGKKVALFGTAGAGPDS--EYAKKILKNVEALLPK 98 (160)
T ss_pred --------ccCCeEEEEEecCCCCch--HHHHHHHHHHHHhhcc
Confidence 456889999952 22 4566666777766654
No 116
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.65 E-value=5.4e-08 Score=90.10 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=88.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
|+++|+|+|.+|+|.++|+.|+..|.++ |.+|++.|+.....-+ +.+++.+|+++|.| .|........|++
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~--g~qvdi~dl~~~~~~~------l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRES--GIQVDIQDLHAVEEPA------LEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhc--CCeeeeeehhhhhccC------hhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 5899999999999999999999999999 9999999998776445 88999999999999 9998888888887
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcchhHH---HHHHHHHHHHHHHCCC
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHF---NKIGIVLDEELCKQGG 209 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f---~~~~k~ld~~L~~lGa 209 (599)
.-.+. |+++..|+|.++=. |..+ -+.-..+++.|.+---
T Consensus 72 k~~e~------L~~kP~A~f~vnl~-a~k~k~~~e~~~yv~kfl~~~~W 113 (175)
T COG4635 72 KHAEA------LSTKPSAFFSVNLT-ARKEKRTPETNSYVRKFLMKSPW 113 (175)
T ss_pred HHHHH------HhcCCceEEEeehh-hcccccCchHHHHHHHHHhcCCC
Confidence 76553 78899999987522 3333 4445566666665433
No 117
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.48 E-value=9e-07 Score=83.84 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=75.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC---C------c--hH------------HHhhhccCCe
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---D------D--EQ------------YEEKLKKETL 141 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~---~------~--~~------------~~~~l~~~~~ 141 (599)
|++|+|-|.||||+++|+.|++.+... -.++.....|.. + . .+ ...++.+++.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 579999999999999999999866321 122333333333 0 0 00 1123568899
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEee-cCcchhHHHHHHHHHHHHHHHCCCeEEecceeecC
Q 007547 142 AFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (599)
Q Consensus 142 vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~ 220 (599)
|+++.|+| .|.+|..+..|++.. . ++|++++.|-. |.+ .++.+.+.+.+.+. +++ +.+-.....
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~~---~-----~~gK~v~~F~T~ggs---~~~~~~~~l~~~~~--~a~-i~~g~~~~~ 141 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQY---D-----FSGKTVIPFCTSGGS---GFGNSLEDLKKLCP--GAT-ILEGLAINR 141 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHCT---T-----TTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSE-E---EE---
T ss_pred EEEechHH-cCCCCHHHHHHHHhc---C-----CCCCcEEEEEeeCCC---ChhHHHHHHHHHCC--CCE-eecCeEEeC
Confidence 99999999 999998888777543 2 88999999974 222 24455566655442 444 333222222
Q ss_pred CCCcHHHHHHHHHHH
Q 007547 221 DQCIEDDFTAWRELV 235 (599)
Q Consensus 221 ~~~~e~~~~~W~~~l 235 (599)
+.-.++++.+|.+++
T Consensus 142 ~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 142 GSVSEEEIKEWLKKI 156 (156)
T ss_dssp S---HHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHhC
Confidence 222678999998764
No 118
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.42 E-value=9.4e-06 Score=79.47 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=96.4
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-----------hHHHhhhccCCeEEEEeecCC
Q 007547 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATYG 150 (599)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-----------~~~~~~l~~~~~vif~~sTyG 150 (599)
++|+++.||.. ++|.++++.+.+.+.+. |++++++|+.++...+ ..+..++...+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~--g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGL--GVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhC--CCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 58999999984 88999999999999987 8899999888765432 13445577889999999999
Q ss_pred CCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 151 ~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
.|..|.-++.|++|+... .+++|.+++++.| ...++.-..--.+...|..+|+..+
T Consensus 78 ~~s~pg~LKn~iD~l~~~-----~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLPER-----ALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCChh-----hhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 999999999999999542 3899999999988 4455555444567778888999754
No 119
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=98.30 E-value=1.8e-05 Score=76.07 Aligned_cols=119 Identities=12% Similarity=0.205 Sum_probs=92.5
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-----------hHHHhhhccCCeEEEEeecCCC
Q 007547 85 KVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATYGD 151 (599)
Q Consensus 85 ~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-----------~~~~~~l~~~~~vif~~sTyG~ 151 (599)
+|+++.||. .++|.++++.+.+.+.+. |.+++++|+.++...+ ..+.+++...+.+||++|.| +
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~--~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQ--GVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHC--CCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 588999995 788999999999999877 7778888887654321 22445566889999999999 9
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
|.+|...+.|++|+.... +.+|.+++++.| ..+.++...-..+...|..+|+..+
T Consensus 78 ~sip~~LK~~iD~~~~~~-----l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~ 132 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQRA-----LRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHI 132 (171)
T ss_pred CCCCHHHHHHHHhCChhh-----hCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccc
Confidence 999999999999986432 889999988877 4455554443567888888999644
No 120
>PRK00170 azoreductase; Reviewed
Probab=98.23 E-value=6.4e-05 Score=73.68 Aligned_cols=156 Identities=11% Similarity=-0.018 Sum_probs=104.5
Q ss_pred CCeEEEEEECC--C-chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC---------------------------chHH
Q 007547 83 KTKVTVFYGTQ--T-GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------------------DEQY 132 (599)
Q Consensus 83 ~~~v~I~YgSq--t-Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~---------------------------~~~~ 132 (599)
|++|+|++||- . |+|..+|+.+.+.+.+.+++.+++++|+.+.+.. -.++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999988766778999998765421 0123
Q ss_pred HhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCC--------CCCCCCCCcEEEEEeecCcch--hHHHHHHHHHHH
Q 007547 133 EEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN--------DRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDE 202 (599)
Q Consensus 133 ~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~ 202 (599)
.+++...+.+||++|.| .+..|.-++.|++++.... .....++++++.++......+ .....+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 45677889999999999 8999999999999975321 011347899998888632222 112445566777
Q ss_pred HHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHH
Q 007547 203 ELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELD 240 (599)
Q Consensus 203 ~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~ 240 (599)
.|.-+|.+.+........ ....+.-++|.++....+.
T Consensus 160 ~~~~~G~~~~~~~~~~g~-~~~~~~~~~~~~~a~~~~~ 196 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGH-NYGPEKAAKIISAAKAAAD 196 (201)
T ss_pred HHHhcCCCceEEEEEecc-cCCchHHHHHHHHHHHHHH
Confidence 787889876544332221 1122334455554444443
No 121
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.21 E-value=9.2e-07 Score=88.36 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=63.3
Q ss_pred eecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCC---CCCCcEEEE
Q 007547 474 YSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPA---NPSVPIIMV 549 (599)
Q Consensus 474 YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~---~~~~piImI 549 (599)
||.|+......+.+.|.|+.+. .|++|+|+++ ++.| |.|.+..|.|+|.... +.++|++++
T Consensus 204 ~~~S~~~~t~rN~~R~sVr~~A---------~G~VS~~~H~~~KVG------D~v~~S~PAG~F~~~r~~~~~N~PL~~~ 268 (385)
T KOG3378|consen 204 YSLSNRVDTCRNQFRISVRRVA---------GGVVSNFVHDNLKVG------DIVGVSPPAGNFVYKRSEENVNRPLLCF 268 (385)
T ss_pred HHHhhhhhhhccceeEEEeehh---------chhhHHHhhcccccc------ceeeccCCCccceeehhhhccCCceEEe
Confidence 4444333333577888887653 6999999998 8888 8999999999997653 567999999
Q ss_pred eCCCChHHHHHHHHHHHH
Q 007547 550 GPGTGLAPFRGFLQERMA 567 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~ 567 (599)
++|.||+|++.+|.+.+.
T Consensus 269 a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 269 AGGIGITPLIPIIETALL 286 (385)
T ss_pred cCCcCccccHHHHHHHHh
Confidence 999999999999998764
No 122
>PRK09739 hypothetical protein; Provisional
Probab=98.15 E-value=8.5e-05 Score=73.05 Aligned_cols=156 Identities=13% Similarity=0.050 Sum_probs=105.8
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC---------------------CchHHHhhhccC
Q 007547 83 KTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---------------------DDEQYEEKLKKE 139 (599)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~---------------------~~~~~~~~l~~~ 139 (599)
+++|+|++||- .|+|..+++.+.+++.+. |.+++++|+.+.+. +-+.+.+++...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~--g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQER--GHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHC--CCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 68999999997 477899999999999988 78888888865421 113466778889
Q ss_pred CeEEEEeecCCCCCCChhHHHHHHHHhcCCC---CCCCCCCcEEEEEeecCcchhHHH-----H-HHHHHH-HHHHHCCC
Q 007547 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGND---RGPWLQQLKFGVFGLGNRQYEHFN-----K-IGIVLD-EELCKQGG 209 (599)
Q Consensus 140 ~~vif~~sTyG~G~~p~na~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds~Y~~f~-----~-~~k~ld-~~L~~lGa 209 (599)
+.+||++|.| .+.+|.-.+.|++.+..... .+..+.+++..++......|++|. . +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 88999999999998753211 113477888888765333444432 2 223344 33444677
Q ss_pred eEEecceeecCC-----CCcHHHHHHHHHHHHHHHHH
Q 007547 210 ARLVPLGLGDDD-----QCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 210 ~~i~~~g~~D~~-----~~~e~~~~~W~~~l~~~L~~ 241 (599)
+.+.....+.-. +...+..++|.+++......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 196 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDA 196 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHH
Confidence 654333333222 34567788998887666554
No 123
>PRK01355 azoreductase; Reviewed
Probab=98.13 E-value=0.00014 Score=71.70 Aligned_cols=158 Identities=13% Similarity=0.127 Sum_probs=108.1
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC----------------c-hHHHhhhccCCe
Q 007547 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD----------------D-EQYEEKLKKETL 141 (599)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~----------------~-~~~~~~l~~~~~ 141 (599)
|++|+|+.||-. |+|..+|+.+.+++.+..++.+++++||.+.+.. + +++.+++...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 8899999999999987533578888888765441 1 235566778899
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHhcCC--------CC---CCCCCCcEEEEEeecCcchh--HHHHHHHHHHHHHHHCC
Q 007547 142 AFFMVATYGDGEPTDNAARFYKWFTEGN--------DR---GPWLQQLKFGVFGLGNRQYE--HFNKIGIVLDEELCKQG 208 (599)
Q Consensus 142 vif~~sTyG~G~~p~na~~F~~~L~~~~--------~~---~~~l~~~~~aVFGlGds~Y~--~f~~~~k~ld~~L~~lG 208 (599)
+||++|.| ++.+|.-++.|++++.... .. ...+.++++.++.......+ .+......+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 9999999999999975421 01 12477888877655332211 13455677778888899
Q ss_pred CeEEecceeecCCC-Cc-HHHHHHHHHHHHHHHHH
Q 007547 209 GARLVPLGLGDDDQ-CI-EDDFTAWRELVWPELDQ 241 (599)
Q Consensus 209 a~~i~~~g~~D~~~-~~-e~~~~~W~~~l~~~L~~ 241 (599)
.+.+.......... .. -+....|.+.-.+.+.+
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 98765554433222 11 12366777665555544
No 124
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=98.11 E-value=6.6e-05 Score=72.26 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=89.3
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC-----------Cc--hHHHhhhccCCeEEEEeecC
Q 007547 85 KVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-----------DD--EQYEEKLKKETLAFFMVATY 149 (599)
Q Consensus 85 ~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~-----------~~--~~~~~~l~~~~~vif~~sTy 149 (599)
||+++.||. .|+|..+|+.+.+.+.+.. |.+++++|+.++++ .+ .++.+++...+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~-g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARL-GISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhc-CCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 589999998 5899999999999886432 57788888866520 10 23556677899999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
+|.+|..++.|++|+... .+.+|++++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~~-----~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDPN-----ALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCHh-----HhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 999999999999998642 38899999999865432 222233446667777887654
No 125
>PRK06934 flavodoxin; Provisional
Probab=98.07 E-value=4.9e-05 Score=75.75 Aligned_cols=132 Identities=11% Similarity=0.092 Sum_probs=78.5
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-------------------hHHHhhhccCCeEEEEe
Q 007547 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-------------------EQYEEKLKKETLAFFMV 146 (599)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-------------------~~~~~~l~~~~~vif~~ 146 (599)
++|.=|+.+|||+.+|+.|++.+... = .++...+.|..+. .....++..++.|+++.
T Consensus 62 ~~~~~~~~~GnTk~vAe~Ia~~~gaD--l--~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~ 137 (221)
T PRK06934 62 ILQKNGEVLGSTQYVAQIIQEETGGD--L--FRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGY 137 (221)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHCCC--E--EEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEc
Confidence 33334444499999999999988532 1 2222223222100 11234577899999999
Q ss_pred ecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEee-cCcchhHHHHHHHHHHHHHHHCCCeEEeccee--ecCCC-
Q 007547 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGL--GDDDQ- 222 (599)
Q Consensus 147 sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~--~D~~~- 222 (599)
|.| -|.+|.-+..|++.. . ++|++++.|.. |- ..+....+.+.+.+. +++.+.+-.. +++..
T Consensus 138 PIW-wg~~P~~V~tFLe~~---d-----~~GK~I~pF~T~gg---sg~g~s~~~i~~l~~--~a~~v~~Gl~i~~~~~~~ 203 (221)
T PRK06934 138 PIW-WYKMPMVMYSFFEQH---D-----FSGKTLIPFTTHGG---SRFSDSLREIKRLQP--NAQLVTQGLAISRNDVTD 203 (221)
T ss_pred chh-hccccHHHHHHHHhc---C-----CCCCEEEEEEecCC---CCccchHHHHHHHcC--CcceeccceeeecCcccc
Confidence 999 888898888886554 2 88999999984 11 233444455544432 4423322111 22211
Q ss_pred -CcHHHHHHHHHHH
Q 007547 223 -CIEDDFTAWRELV 235 (599)
Q Consensus 223 -~~e~~~~~W~~~l 235 (599)
..++++..|.+++
T Consensus 204 ~~~~~~I~~Wl~~l 217 (221)
T PRK06934 204 DDTPKEIINWLNTL 217 (221)
T ss_pred cchHHHHHHHHHHc
Confidence 2478899998753
No 126
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=98.06 E-value=0.00016 Score=70.82 Aligned_cols=152 Identities=17% Similarity=0.104 Sum_probs=109.3
Q ss_pred CeEEEEEECCCc---hHHHHHHHHHHHHHhhhCC-CeEEEEeCCCC----------------------CCCchHHHhhhc
Q 007547 84 TKVTVFYGTQTG---TAEGFAKALAEEIKARYEK-AAVKVVDLDDY----------------------AMDDEQYEEKLK 137 (599)
Q Consensus 84 ~~v~I~YgSqtG---tte~~A~~la~~l~~~~~g-~~v~v~dl~d~----------------------~~~~~~~~~~l~ 137 (599)
|+|+|++||..+ .+..+++.+.+.+.+. + .++.+.||.+. +...+. ++++.
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~--~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l~ 77 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEA--GPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEELL 77 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHH--TTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHc--CCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHH-HHHHH
Confidence 689999999987 5899999999999999 6 78999999874 111112 36688
Q ss_pred cCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC----------CCCCCCCcEEEEEe-ecCcc--hh-------HHHHHH
Q 007547 138 KETLAFFMVATYGDGEPTDNAARFYKWFTEGND----------RGPWLQQLKFGVFG-LGNRQ--YE-------HFNKIG 197 (599)
Q Consensus 138 ~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~----------~~~~l~~~~~aVFG-lGds~--Y~-------~f~~~~ 197 (599)
..+.+||+.|.| .+.+|.-++.|++.+-.... ....|+++++.++- .|... |. .+..+.
T Consensus 78 ~AD~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~ 156 (199)
T PF02525_consen 78 WADHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLL 156 (199)
T ss_dssp HSSEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHH
T ss_pred HcCcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhH
Confidence 899999999999 88899999999999733211 12468899887766 45442 22 344566
Q ss_pred HHHHHHHHHCCCeEEecceeecCCC-CcHHHHHHHHHHHHHHH
Q 007547 198 IVLDEELCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 198 k~ld~~L~~lGa~~i~~~g~~D~~~-~~e~~~~~W~~~l~~~L 239 (599)
..+...++-+|++.+.....++... ..++.+++|++++-+.|
T Consensus 157 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 157 PYLRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 6678888889999987766554332 33788888988776544
No 127
>PRK13556 azoreductase; Provisional
Probab=97.96 E-value=0.00047 Score=68.28 Aligned_cols=157 Identities=9% Similarity=0.059 Sum_probs=106.2
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC-----------------------------Cc
Q 007547 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-----------------------------DD 129 (599)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~-----------------------------~~ 129 (599)
|++|+|+.+|-- +++..+++.+.+.+.+..++.+++++||.+.+. .-
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998765578888888864211 00
Q ss_pred hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC------C--CCCCCCcEEEEEeecCcch-----hHHHHH
Q 007547 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND------R--GPWLQQLKFGVFGLGNRQY-----EHFNKI 196 (599)
Q Consensus 130 ~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~------~--~~~l~~~~~aVFGlGds~Y-----~~f~~~ 196 (599)
+++..++...+.+||++|-| ++.+|.-.+.+++++..... . ...+.++++.++...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 23445677889999999999 89999999999999876421 1 1358899999987632335 233344
Q ss_pred HHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHH
Q 007547 197 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 197 ~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~ 241 (599)
...+...|.-+|++.+- ....+......+...++.++....+.+
T Consensus 160 ~~~l~~il~~~G~~~~~-~v~~~~~~~~~~~~~~~~~~a~~~~~~ 203 (208)
T PRK13556 160 VKYVASMMGFFGVTNME-TVVIEGHNQFPDKAEEIITAGLEEAAK 203 (208)
T ss_pred HHHHHHHHHhcCCCcee-EEEEehhhcChhHHHHHHHHHHHHHHH
Confidence 56778888888987653 333332222334445555544444443
No 128
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.90 E-value=0.00013 Score=72.32 Aligned_cols=123 Identities=17% Similarity=0.097 Sum_probs=90.0
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC-------------------Cc-hHHHhhhccCCeEEE
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-------------------DD-EQYEEKLKKETLAFF 144 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~-------------------~~-~~~~~~l~~~~~vif 144 (599)
.|.+.|-| +|||+.+++.+++.+++. |++++++.+.+.+. ++ +++.+++.+++.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~--G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEA--GAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHc--CCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45556666 799999999999999998 89999888776521 11 235556778999999
Q ss_pred EeecCCCCCCChhHHHHHHH-HhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 145 MVATYGDGEPTDNAARFYKW-FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 145 ~~sTyG~G~~p~na~~F~~~-L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
++||| .|..+..++.|++. ....-. ...+.++..++|..+.+.-..-......+...+...|...+
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~~-~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v 148 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLWA-PGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVV 148 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhcc-cchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEe
Confidence 99999 99999999999999 443221 13488999888887655433222355666667777776654
No 129
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=97.70 E-value=4.7e-05 Score=65.90 Aligned_cols=52 Identities=23% Similarity=0.155 Sum_probs=45.7
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCc
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFK 537 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~ 537 (599)
..|+|||+|.+.. ++.++|+|+... .|..|+||+++++| +.|.+.+|.|+|.
T Consensus 47 ~~R~yS~~s~~~~-~~~~~~~ik~~~---------~G~~S~~L~~l~~G------d~v~i~gP~G~f~ 98 (99)
T PF00970_consen 47 VSRPYSPASSPDD-KGYLEFAIKRYP---------NGRVSRYLHQLKPG------DEVEIRGPYGNFT 98 (99)
T ss_dssp EEEEEEBCSSTTS-SSEEEEEEEECT---------TSHHHHHHHTSCTT------SEEEEEEEESSEE
T ss_pred eecceeEeeecCC-CCcEEEEEEecc---------CCHHHHHHHhCCCC------CEEEEEEcccccC
Confidence 5699999999954 678999998742 69999999999999 8999999999985
No 130
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.55 E-value=0.00036 Score=82.48 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=65.6
Q ss_pred hHHHHHHhcC-----CC-CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEe
Q 007547 458 IGVFFAAVAP-----HL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (599)
Q Consensus 458 ~~~ll~~l~p-----~l-~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~ 531 (599)
++||+.+-.+ .+ .||++||++.+.. .+.++|++++ .|..|.+|+++++| +.+.+.+
T Consensus 821 PGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rv-----------VGkgT~~Ls~l~~G------d~v~v~G 882 (1028)
T PRK06567 821 FGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFE-----------VGKSTSLCKTLSEN------EKVVLMG 882 (1028)
T ss_pred CCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEE-----------EChHHHHHhcCCCC------CEEEEEc
Confidence 5777766522 22 6789999997654 5789999988 59999999999999 7899999
Q ss_pred eCC-CCcCCCCCCCcEEEEeCCCChHH
Q 007547 532 RPS-NFKLPANPSVPIIMVGPGTGLAP 557 (599)
Q Consensus 532 ~~~-~F~Lp~~~~~piImIg~GTGIAP 557 (599)
|.| .|.++. ...+++||+|.|+||
T Consensus 883 PLG~pF~i~~--~k~vLLVgGGVGiAp 907 (1028)
T PRK06567 883 PTGSPLEIPQ--NKKIVIVDFEVGNIG 907 (1028)
T ss_pred ccCCCCCCCC--CCeEEEEEccccHHH
Confidence 999 788874 357999999999998
No 131
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=97.35 E-value=0.0049 Score=61.59 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=91.3
Q ss_pred CCCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc---------hHHHhhhccCCeEEEEeecCC
Q 007547 82 GKTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD---------EQYEEKLKKETLAFFMVATYG 150 (599)
Q Consensus 82 ~~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~---------~~~~~~l~~~~~vif~~sTyG 150 (599)
.+.+|+++.||.- -++..+|+.+++.+.+. |++++++|+.+++.-+ ..+...+...+.+||++|-|
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~--g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY- 101 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGCE--GRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER- 101 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhhc--CCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-
Confidence 3679999999874 34578999999999877 7889999876544211 11333455789999999999
Q ss_pred CCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 151 ~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
+|..|...+.+++|+.....+...+.+|.++|.|.+ .... --.+...+...|..+|+..+
T Consensus 102 n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~~-g~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 102 HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGSQ-SFNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC-CcHh-HHHHHHHHHHHHHHCCCccc
Confidence 899999999999999764211124889999999853 1111 23356778888888888654
No 132
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=97.16 E-value=0.0005 Score=64.35 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=38.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHhhc-CCCCCCEEEEEeccCCCcccchHHhh
Q 007547 545 PIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMVRIFCYLL 597 (599)
Q Consensus 545 piImIg~GTGIAPfrsflqer~~~~~~-g~~~g~~~Lf~G~R~~~~D~ly~~El 597 (599)
.+++||+|+||+|+.+++++.....++ .....++.|+|-+|+.+.=..|+++|
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l 56 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPEL 56 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHH
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHH
Confidence 589999999999999999999876552 23568899999999988333566444
No 133
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=97.16 E-value=0.035 Score=54.09 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=99.9
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCC----CCchHHHhhhccCCeEEEEeecCCCCCCCh
Q 007547 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA----MDDEQYEEKLKKETLAFFMVATYGDGEPTD 156 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~----~~~~~~~~~l~~~~~vif~~sTyG~G~~p~ 156 (599)
+.+++++|++++....... +++...++.+. ..++.+.||...- .+-......|...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~-~n~~l~~~~~~--~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSV-ANRVLLKPAQQ--LEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCH-HHHHHHHHHHc--CCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 4578999999999875322 33333333333 3457778876532 22223445578899999999999 777888
Q ss_pred hHHHHHHHHhcCCC----CCCCCCCcEEEEEe-ecCcc--hh--HHHH-----HHHHHHHHHHHCCCeEEecceeecCCC
Q 007547 157 NAARFYKWFTEGND----RGPWLQQLKFGVFG-LGNRQ--YE--HFNK-----IGIVLDEELCKQGGARLVPLGLGDDDQ 222 (599)
Q Consensus 157 na~~F~~~L~~~~~----~~~~l~~~~~aVFG-lGds~--Y~--~f~~-----~~k~ld~~L~~lGa~~i~~~g~~D~~~ 222 (599)
-++.+++..-.... .+..++|+++.+.- .|... |. .++. ...-+...+.-+|.+.+-+....+...
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 89988887654211 12458999988764 44432 42 1221 222233444457998877766666555
Q ss_pred CcHHHHHHHHHHHHHHHHHh
Q 007547 223 CIEDDFTAWRELVWPELDQL 242 (599)
Q Consensus 223 ~~e~~~~~W~~~l~~~L~~~ 242 (599)
..+++.++|.++..+.|...
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 159 QSPEELASHARAYGDWLANP 178 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhh
Confidence 56778888888877777653
No 134
>PRK13555 azoreductase; Provisional
Probab=97.13 E-value=0.038 Score=54.92 Aligned_cols=129 Identities=11% Similarity=0.123 Sum_probs=91.1
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC--------------------Cc---------
Q 007547 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM--------------------DD--------- 129 (599)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~--------------------~~--------- 129 (599)
|++++++++|-. -.+..+|+.+.+.+++..++.++.+.||-+.+. ..
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 568999999954 568888999999998875457888888755321 10
Q ss_pred hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCC------C--CCCCCCCcEEEEEeecCcchhH-----HHHH
Q 007547 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------D--RGPWLQQLKFGVFGLGNRQYEH-----FNKI 196 (599)
Q Consensus 130 ~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~~-----f~~~ 196 (599)
+.+.+++...+.+||++|-| ++.+|.-.+.+++++.... . ....+++++..|++.....|.. ....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 12445577889999999999 8889999999999987531 1 1145899999999773233521 2223
Q ss_pred HHHHHHHHHHCCCeEE
Q 007547 197 GIVLDEELCKQGGARL 212 (599)
Q Consensus 197 ~k~ld~~L~~lGa~~i 212 (599)
...+...|.-+|.+.+
T Consensus 160 ~~yl~~il~~~Gi~~v 175 (208)
T PRK13555 160 VNYVTTVLGFWGITNP 175 (208)
T ss_pred HHHHHHHHHhcCCCce
Confidence 3667777877888643
No 135
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.78 E-value=0.0044 Score=71.58 Aligned_cols=110 Identities=19% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cC-CC-CCCCC----ceEEEEEeeCCCCcCCC
Q 007547 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI-PL-EGNGD----CSWAPIFIRPSNFKLPA 540 (599)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~-~g-~~~~~----~~~v~i~~~~~~F~Lp~ 540 (599)
.+|=.+|||+|+| +++.+.+.|+. .|-.|.-|.+ +. .. +.+.+ .-++.|.+|.|.=.-.-
T Consensus 397 ~~qwHPFTItSsp--~dd~lsvhIk~-----------~g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~ 463 (646)
T KOG0039|consen 397 KLEWHPFTITSAP--EDDFLSVHIKA-----------LGDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDV 463 (646)
T ss_pred ccccCCceeecCC--CCCEEEEEEEe-----------cCcHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhh
Confidence 4678999999999 47899999987 4555666655 22 11 11111 24678888887322222
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCC------------CCCCEEEEEeccCCCccc
Q 007547 541 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA------------QLGPALLFFGCRNRRMVR 591 (599)
Q Consensus 541 ~~~~piImIg~GTGIAPfrsflqer~~~~~~g~------------~~g~~~Lf~G~R~~~~D~ 591 (599)
..-.-++|||+|.|++||.+.+++.....+.+. ..+++..+|-||... ++
T Consensus 464 ~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf 525 (646)
T KOG0039|consen 464 FKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SF 525 (646)
T ss_pred hhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-ch
Confidence 223467999999999999999999987543331 356778888888766 44
No 136
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=96.54 E-value=0.03 Score=52.76 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=87.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHh-----------------hhccCCeEEEEe
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEE-----------------KLKKETLAFFMV 146 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~-----------------~l~~~~~vif~~ 146 (599)
.+|.|+|-|.+|.-+.+|+.+.+.+.+. +-+..++.+.+.-.++ ++. .|.+++..+|+.
T Consensus 2 ~kv~iv~ys~yghv~~lAe~~kkGie~a--~geA~i~qVpEtl~~e--vl~km~a~pkp~d~piit~~~L~e~D~flFG~ 77 (203)
T KOG3135|consen 2 PKVAIVIYSTYGHVAKLAEAEKKGIESA--GGEATIYQVPETLSEE--VLEKMKAPPKPSDYPIITPETLTEYDGFLFGF 77 (203)
T ss_pred ceEEEEEEEcccHHHHHHHHHHhhhhcc--CCeeEEEEcccccCHH--HHHHhcCCCCCccCCccCHHHHhhccceeecc
Confidence 5799999999999999999999999876 3377777655442211 332 356789999999
Q ss_pred ecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeec
Q 007547 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGD 219 (599)
Q Consensus 147 sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D 219 (599)
||- .|.+|..++.||+.-..+ -....|.|+..++|=.+-+.=+-=...+..--..|.-.|. .++|+|.-+
T Consensus 78 PTR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGm-ifVPlGYkn 147 (203)
T KOG3135|consen 78 PTR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGM-IFVPLGYKN 147 (203)
T ss_pred ccc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcce-EEEecccch
Confidence 999 999999999999973221 1112389999999976553211111122223334555565 566877544
No 137
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=95.76 E-value=0.1 Score=50.70 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=84.1
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCC-CeEEEEeCC----CCCCC-------chHHHhhhccCCeEEEEeecC
Q 007547 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEK-AAVKVVDLD----DYAMD-------DEQYEEKLKKETLAFFMVATY 149 (599)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g-~~v~v~dl~----d~~~~-------~~~~~~~l~~~~~vif~~sTy 149 (599)
+||++++||.. -.+..+|+.+++.+... + ..+...+++ +.+.+ -..+.+.+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~--~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAG--GEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhccc--CceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc
Confidence 57999999975 45678888888888765 3 223222321 11111 112344466789999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
+|..|.-.+..++|+.... +.++.+++++.|-... +.-.+...+...|..+|+..+..
T Consensus 79 -n~s~pg~lKnaiD~l~~~~-----~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 79 -NGSYPGALKNAIDWLSREA-----LGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred -CCCCCHHHHHHHHhCCHhH-----hCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 9999999999999998753 8899998888643332 22335577777888888876643
No 138
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=95.42 E-value=0.42 Score=46.23 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=93.6
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC----CchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~----~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
|+|+++........+-+.|.+.+... + .+++.||.+..+ +-......|...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~-~--~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL-E--GVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc-C--CeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 88999998876556777777776643 2 377777654322 1122445577899999999999 78888888888
Q ss_pred HHHHhcCC----CCCCCCCCcEE-EEEeecCc--chh-----HHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHH
Q 007547 162 YKWFTEGN----DRGPWLQQLKF-GVFGLGNR--QYE-----HFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 229 (599)
Q Consensus 162 ~~~L~~~~----~~~~~l~~~~~-aVFGlGds--~Y~-----~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~ 229 (599)
++..-... ..+..++|+++ .++..|.. .|. .+.....-+...+.-+|.+.+-+..........++++.
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 88754321 11245889877 45555654 231 12223444555666689987766554433223355555
Q ss_pred HHHHHHHHHHHH
Q 007547 230 AWRELVWPELDQ 241 (599)
Q Consensus 230 ~W~~~l~~~L~~ 241 (599)
+..++..+.|..
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555555554444
No 139
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=92.96 E-value=2.5 Score=41.41 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=97.1
Q ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhhhCCCeEEEE-----------eCCC--CCCCchHHHhhhccCCeEEEEeecC
Q 007547 84 TKVTVFYGTQT-GTAEGFAKALAEEIKARYEKAAVKVV-----------DLDD--YAMDDEQYEEKLKKETLAFFMVATY 149 (599)
Q Consensus 84 ~~v~I~YgSqt-Gtte~~A~~la~~l~~~~~g~~v~v~-----------dl~d--~~~~~~~~~~~l~~~~~vif~~sTy 149 (599)
|+|+|+||-.- .-+...++.+.+.+.+. +.++... ...| ...+-..-.+.+...+.+||.-|-|
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~--~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw 78 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEA--GHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW 78 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHc--chHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch
Confidence 58999999985 44444555555555544 3332211 1122 3332223455577889999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCC----CC----CCCCCcEEEEEeecCcchhHHHHHHH---------HHHHHHHHCCCeEE
Q 007547 150 GDGEPTDNAARFYKWFTEGND----RG----PWLQQLKFGVFGLGNRQYEHFNKIGI---------VLDEELCKQGGARL 212 (599)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~----~~----~~l~~~~~aVFGlGds~Y~~f~~~~k---------~ld~~L~~lGa~~i 212 (599)
=...|.-.+.+++..-.... .+ ..|+|+++-++..-...-+.|...+. .+.-.+.-+|...+
T Consensus 79 -W~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 157 (189)
T COG2249 79 -WYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWL 157 (189)
T ss_pred -hccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccc
Confidence 77788888888887644221 11 56999998887764333233332222 23344556787766
Q ss_pred ecceeecCCCCcHHHHHHHHHHHHHHHHHh
Q 007547 213 VPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (599)
Q Consensus 213 ~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~ 242 (599)
-+...+......++...+|.+++-..|++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 158 PPFTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred cceeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 666666555467899999999887777654
No 140
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.63 E-value=5.5 Score=36.82 Aligned_cols=129 Identities=13% Similarity=0.139 Sum_probs=81.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC-CCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d-~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
++-.|+-++.-|..-.+...+...+-+..| .+++++-. ...++ +.....+.+.=+++.|.. .+..-..+..+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G---~eVi~LG~~vp~e~--i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~ 75 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAG---FEVINLGVMTSQEE--FIDAAIETDADAILVSSL-YGHGEIDCRGLR 75 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCC---CEEEECCCCCCHHH--HHHHHHHcCCCEEEEcCc-cccCHHHHHHHH
Confidence 345677889999998888887777655444 66788754 44443 666666666544444444 334446677788
Q ss_pred HHHhcCCCCCCCCCCcEEEEEee---cCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGL---GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGl---Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~ 236 (599)
+.|++.. +.+.++.+=|. +++. .....++|+++|...+++.+ ...+++..|....|
T Consensus 76 ~~L~~~~-----~~~~~i~vGG~~~~~~~~-------~~~~~~~l~~~G~~~vf~~~------~~~~~i~~~l~~~~ 134 (137)
T PRK02261 76 EKCIEAG-----LGDILLYVGGNLVVGKHD-------FEEVEKKFKEMGFDRVFPPG------TDPEEAIDDLKKDL 134 (137)
T ss_pred HHHHhcC-----CCCCeEEEECCCCCCccC-------hHHHHHHHHHcCCCEEECcC------CCHHHHHHHHHHHh
Confidence 8887754 55666555552 1222 25566788999998888754 23566666765543
No 141
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=89.91 E-value=6.5 Score=36.31 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=82.5
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC-CCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHH
Q 007547 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (599)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d-~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L 165 (599)
.|+-|+--|..-.....+-..+-+..| .+++|+-- ..++ ++++...+++.=+++.|+. .|.--..+..+.+.|
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~G---feVi~LG~~v~~e--~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l 76 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAG---FNVVNLGVLSPQE--EFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKC 76 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCC---CEEEECCCCCCHH--HHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHH
Confidence 466688899998888877666554444 66788854 4443 4777788888877777777 565556788888888
Q ss_pred hcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHH
Q 007547 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWREL 234 (599)
Q Consensus 166 ~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~ 234 (599)
++.. +.++. .++| |.-..+. .-...+.++|+++|..++++.+. ..+++-.|.++
T Consensus 77 ~~~g-----l~~~~-vivG-G~~vi~~--~d~~~~~~~l~~~Gv~~vF~pgt------~~~~iv~~l~~ 130 (134)
T TIGR01501 77 DEAG-----LEGIL-LYVG-GNLVVGK--QDFPDVEKRFKEMGFDRVFAPGT------PPEVVIADLKK 130 (134)
T ss_pred HHCC-----CCCCE-EEec-CCcCcCh--hhhHHHHHHHHHcCCCEEECcCC------CHHHHHHHHHH
Confidence 8755 55554 4566 4322110 01123456889999999987542 34666666543
No 142
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=87.39 E-value=2.5 Score=43.50 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=64.9
Q ss_pred CCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcE
Q 007547 467 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (599)
Q Consensus 467 p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~pi 546 (599)
.+..+|.|+|.+-... .+++.|-+.++. ..|.+|.|-.+.++| |++.|.+|.+.+..+.. ..-+
T Consensus 83 ~r~~~R~YTiR~~d~~-~~e~~vDfVlH~--------~~gpas~WA~~a~~G------D~l~i~GP~g~~~p~~~-~~~~ 146 (265)
T COG2375 83 QRPPQRTYTIRAVDAA-AGELDVDFVLHG--------EGGPASRWARTAQPG------DTLTIMGPRGSLVPPEA-ADWY 146 (265)
T ss_pred cCCCcccceeeeeccc-ccEEEEEEEEcC--------CCCcchhhHhhCCCC------CEEEEeCCCCCCCCCCC-cceE
Confidence 4567899999865422 355555554432 279999999999999 89999999998776643 5689
Q ss_pred EEEeCCCChHHHHHHHHHHHH
Q 007547 547 IMVGPGTGLAPFRGFLQERMA 567 (599)
Q Consensus 547 ImIg~GTGIAPfrsflqer~~ 567 (599)
+|||==|++=-+.+.|.+.-.
T Consensus 147 lLigDetAlPAIa~iLE~lp~ 167 (265)
T COG2375 147 LLIGDETALPAIARILETLPA 167 (265)
T ss_pred EEeccccchHHHHHHHHhCCC
Confidence 999999998888888877643
No 143
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=85.79 E-value=10 Score=34.72 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=73.5
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC-CCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHh
Q 007547 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (599)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d-~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~ 166 (599)
|+-|+.-|..-...+.|...+-+..| .+++|+-- ...+ ++++...+.+.-+++.|+. .|.--..+..+.+.|+
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~G---feVidLG~~v~~e--~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEAG---FNVVNLGVLSPQE--EFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCD 75 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHCC---CEEEECCCCCCHH--HHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHH
Confidence 66788888888888877766654444 66788854 3333 4777777778777777776 5555577888999888
Q ss_pred cCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecce
Q 007547 167 EGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (599)
Q Consensus 167 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (599)
+.. ++..++.| | |.-.-+ ..-.....++|+++|..++++.+
T Consensus 76 ~~g-----l~~v~viv-G-G~~~i~--~~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 76 EAG-----LKDILLYV-G-GNLVVG--KQDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred HCC-----CCCCeEEE-E-CCCCCC--hhhhHHHHHHHHHcCCCEEECcC
Confidence 754 54543333 3 321100 00113345678999999998765
No 144
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=85.34 E-value=0.8 Score=41.19 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCC
Q 007547 467 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 536 (599)
Q Consensus 467 p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F 536 (599)
++...|.|||.+.... .+++.|-+.+.. ..|.+|.|..+.++| |.|-|.+|.+.|
T Consensus 63 ~~p~~R~YTvR~~d~~-~~~l~iDfv~Hg--------~~Gpas~WA~~A~pG------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 63 QRPVMRTYTVRRFDPE-TGELDIDFVLHG--------DEGPASRWARSARPG------DRVGVTGPRGSF 117 (117)
T ss_dssp ---EEEEEE--EEETT---EEEEEEE--S--------S--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCCCcCEeeEcCC-CCEEEEEEEECC--------CCCchHHHHhhCCCC------CEEEEeCCCCCC
Confidence 4457899999987533 356666665532 139999999999999 899999998876
No 145
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=81.20 E-value=9.7 Score=34.99 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=70.5
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~ 164 (599)
++.|+-++.-|...+....|...+-+.. | ++|+++.-+... +++.....+++.=+++.|+. .+.-...+....+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~-G--feVi~lg~~~s~-e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADL-G--FDVDVGPLFQTP-EEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKE 76 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhC-C--cEEEECCCCCCH-HHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHH
Confidence 3567778888888888877777665443 4 567777644322 24666666666655555555 45555678888888
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecce
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (599)
|++.. +...++.+ | |.- ++.-.+.|+++|..+++..|
T Consensus 77 L~~~g-----~~~i~viv-G-G~~--------~~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 77 LDKLG-----RPDILVVV-G-GVI--------PPQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HHhcC-----CCCCEEEE-e-CCC--------ChHhHHHHHHCCCCEEECCC
Confidence 87753 33333333 3 322 12223468899999988765
No 146
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=81.12 E-value=0.68 Score=50.58 Aligned_cols=60 Identities=30% Similarity=0.571 Sum_probs=52.7
Q ss_pred EEeecCcch------hHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHHH
Q 007547 182 VFGLGNRQY------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 182 VFGlGds~Y------~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L~~ 241 (599)
|||+||+-| ..|++=.|.+..+|.+++|.....+|+|+|++ +....+..|--.||++|..
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~ 68 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGK 68 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcC
Confidence 689999987 26888999999999999999999999998876 5678888999899999876
No 147
>PRK05907 hypothetical protein; Provisional
Probab=74.33 E-value=65 Score=34.03 Aligned_cols=133 Identities=11% Similarity=0.008 Sum_probs=73.7
Q ss_pred hHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhh-----ccC-CeEEEEeec
Q 007547 75 DEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-----KKE-TLAFFMVAT 148 (599)
Q Consensus 75 ~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l-----~~~-~~vif~~sT 148 (599)
....+..+. .++++||++. +...++|.+.+-.. + ...+|.++.+.+. ++... ..+ ++|++--+
T Consensus 10 ~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~--~--~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~- 78 (311)
T PRK05907 10 FSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSG--R--KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA- 78 (311)
T ss_pred HHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCC--c--cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc-
Confidence 334444444 9999999999 77777776666322 2 2457888877654 44442 233 44444222
Q ss_pred CCCCCCC-hhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHH
Q 007547 149 YGDGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDD 227 (599)
Q Consensus 149 yG~G~~p-~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~ 227 (599)
+.+. .+...+.+++.+.. ......||.. .++|+.+.-|.+.+ |+. +-..++ -....+.+
T Consensus 79 ---~~~~~~~~~~L~~Yl~np~------~~~~liv~~~---~~d~~kkl~K~i~k-----~~~-v~~~~e--~~~l~e~~ 138 (311)
T PRK05907 79 ---EKMSSSTQEFLIRYARNPN------PHLTLFLFTT---KQECFSSLSKKLSS-----ALC-LSLFGE--WFADRDKR 138 (311)
T ss_pred ---cccccccHHHHHHHHhCCC------CCeEEEEEEe---cccHHHHHHHHHhh-----cce-eccccc--cCCCCHHH
Confidence 2222 35677888888732 2234454654 26777765555542 221 200011 11235789
Q ss_pred HHHHHHHHHHH
Q 007547 228 FTAWRELVWPE 238 (599)
Q Consensus 228 ~~~W~~~l~~~ 238 (599)
+..|..+....
T Consensus 139 L~~Wi~~~~~~ 149 (311)
T PRK05907 139 IAQLLIQRAKE 149 (311)
T ss_pred HHHHHHHHHHH
Confidence 99998765444
No 148
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=65.53 E-value=93 Score=27.35 Aligned_cols=108 Identities=16% Similarity=0.032 Sum_probs=62.1
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhc
Q 007547 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (599)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~ 167 (599)
|+.++.-|....+.-.+...+-+.. |++ ++++...-. .+++...+.+.+.-+++.|++ .+.....+.++.+.+++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~-G~~--V~~lg~~~~-~~~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDA-GFE--VIDLGVDVP-PEEIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKE 76 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHC-CCE--EEECCCCCC-HHHHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHH
Confidence 5666777777777776666654443 555 466653322 223556666655444444443 34444777888888877
Q ss_pred CCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 168 GNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 168 ~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
.. ..+..+.+=|.. +.... +.+++.|+..++..
T Consensus 77 ~~-----~~~~~i~vGG~~------~~~~~----~~~~~~G~D~~~~~ 109 (119)
T cd02067 77 AG-----LDDIPVLVGGAI------VTRDF----KFLKEIGVDAYFGP 109 (119)
T ss_pred cC-----CCCCeEEEECCC------CChhH----HHHHHcCCeEEECC
Confidence 42 224555555522 22212 47788999888763
No 149
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=63.52 E-value=27 Score=34.47 Aligned_cols=75 Identities=28% Similarity=0.387 Sum_probs=42.6
Q ss_pred eEEEEEECCCc----hHHHHHHHHHHHHHhhhCCCeEEEE-eCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHH
Q 007547 85 KVTVFYGTQTG----TAEGFAKALAEEIKARYEKAAVKVV-DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 85 ~v~I~YgSqtG----tte~~A~~la~~l~~~~~g~~v~v~-dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (599)
||+|++|+-.| ..+...+.|++.|.+. +++++.+. |.+.++.++ |..++++||.... ++--.++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~-~~~~v~~~~~~~~~~~~~------L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEES-EGFEVTVTEDPDDLTPEN------LKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHT-TCEEEEECCSGGCTSHHC------HCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccC-CCEEEEEEeCcccCChhH------hcCCCEEEEECCC-CCcCCHHHHH
Confidence 58899888433 2345666777777633 26666554 344455444 8899988877655 2223445556
Q ss_pred HHHHHHhc
Q 007547 160 RFYKWFTE 167 (599)
Q Consensus 160 ~F~~~L~~ 167 (599)
.|.+++++
T Consensus 73 al~~~v~~ 80 (217)
T PF06283_consen 73 ALRDYVEN 80 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 67777764
No 150
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=63.37 E-value=21 Score=29.87 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=28.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEE
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV 119 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v 119 (599)
+++++++++-.|++..++.+|.+.+.+. ++.+.+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~--~i~~~v 34 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKEN--GIDVKV 34 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC--CCceEE
Confidence 4799999999999999999999999766 554443
No 151
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=61.76 E-value=74 Score=34.95 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=63.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-hHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
..-++|.|||.++++++.++.+. ++ |.++.++++.-+.+=+ +.+...+.+.+.++++=-++-.|..-.-..++
T Consensus 268 ad~~iV~~Gs~~~~a~ea~~~L~----~~--G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 268 AEVAIVALGTTYESAIVAAKEMR----KE--GIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred CCEEEEEEChhHHHHHHHHHHHH----hC--CCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHH
Confidence 34688889998888887777664 34 6777777776543322 22444455677777776666555544444555
Q ss_pred HHHHhcCCCCCCCCCCcEE---EEEeecCcch--hHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKF---GVFGLGNRQY--EHFNKIGIVLDE 202 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~---aVFGlGds~Y--~~f~~~~k~ld~ 202 (599)
...|..... ..... .++|+|...+ +..-++.+.+.+
T Consensus 342 ~~al~~~~~-----~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 342 TSAVYQTQG-----TKHPVVSNYIYGLGGRDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHhccCc-----CCCceEeeeEECCCCCCCCHHHHHHHHHHHHh
Confidence 555543210 01233 6778877665 444444444443
No 152
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=61.63 E-value=36 Score=32.57 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=25.6
Q ss_pred hhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEE
Q 007547 74 DDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK 118 (599)
Q Consensus 74 ~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~ 118 (599)
........+..+|.++ |+++..++++++.++++|+++++.
T Consensus 37 ~ll~~~~~~~~~v~ll-----G~~~~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 37 ALLELAAQKGLRVFLL-----GAKPEVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred HHHHHHHHcCCeEEEE-----CCCHHHHHHHHHHHHHHCCCcEEE
Confidence 3344444456676666 666666777777777788877653
No 153
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=60.77 E-value=33 Score=37.05 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=58.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
+.+|.++||.-|-.+++...-+.++.... ++=-..|.- +..+..+|.. ..-|-.++....
T Consensus 66 ~d~V~~ifGc~TSasRKaVlPvvE~~~~L-------L~Yp~~YEG--------~E~S~nviYt-----Ga~PNQ~~~pl~ 125 (363)
T PF13433_consen 66 EDGVRAIFGCYTSASRKAVLPVVERHNAL-------LFYPTQYEG--------FECSPNVIYT-----GAAPNQQLLPLI 125 (363)
T ss_dssp HS---EEEE--SHHHHHHHHHHHHHCT-E-------EEE-S----------------TTEEE------S--GGGTHHHHH
T ss_pred hCCccEEEecchhhhHHHHHHHHHhcCce-------EEecccccc--------ccCCCceEEc-----CCCchhhHHHHH
Confidence 45677778877777777665555533211 221112221 2233334432 234557889999
Q ss_pred HHHhcCCCCCCCCCC-cEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecce
Q 007547 163 KWFTEGNDRGPWLQQ-LKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~-~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (599)
+|+.+. .| +++...|. +|-|=-.+.|.+.+.+++.|++.+.+.-
T Consensus 126 ~~~~~~-------~G~~r~~lvGS---dYv~pre~Nri~r~~l~~~GgevvgE~Y 170 (363)
T PF13433_consen 126 DYLLEN-------FGAKRFYLVGS---DYVYPRESNRIIRDLLEARGGEVVGERY 170 (363)
T ss_dssp HHHHHH-------S--SEEEEEEE---SSHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHhc-------cCCceEEEecC---CccchHHHHHHHHHHHHHcCCEEEEEEE
Confidence 999874 36 99999993 6877777889999999999999887643
No 154
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=60.46 E-value=11 Score=35.88 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=41.0
Q ss_pred CCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceee-cCCCCcHHHHHHH
Q 007547 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG-DDDQCIEDDFTAW 231 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~-D~~~~~e~~~~~W 231 (599)
+...+++|+-.||+....++..+..+...|++.|++... .+.. |+...+.+.+++|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~-~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLAD-RAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEE-EEEcCCCHHHHHHHHHHH
Confidence 567899999999998877888899999999999997554 3444 4332344444444
No 155
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=59.19 E-value=50 Score=30.04 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=48.4
Q ss_pred hHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCC
Q 007547 75 DEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (599)
Q Consensus 75 ~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~ 154 (599)
+.+.+...+.-+.+-+|+.+|+++.+|.++.+... +.+..++..++-... ...+.+...+|+++ . .|+-
T Consensus 6 ~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~-----i~~~~~~~~e~~hg~---~~~~~~~~~vi~is-~--~g~t 74 (153)
T cd05009 6 LAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSY-----IHAEAYSAGEFKHGP---IALVDEGTPVIFLA-P--EDRL 74 (153)
T ss_pred HHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHh-----hcceeccHHHhccCh---hhhccCCCcEEEEe-c--CChh
Confidence 34444444555667777899999999999888753 225555555553322 12244555666655 3 3333
Q ss_pred ChhHHHHHHHHhc
Q 007547 155 TDNAARFYKWFTE 167 (599)
Q Consensus 155 p~na~~F~~~L~~ 167 (599)
.+.+.+..+++++
T Consensus 75 ~~~~~~~~~~~~~ 87 (153)
T cd05009 75 EEKLESLIKEVKA 87 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 3456677777776
No 156
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=58.94 E-value=21 Score=33.82 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=24.5
Q ss_pred hccCCeEEEEeecCCCCCCChhHHHHHHHHhc
Q 007547 136 LKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (599)
Q Consensus 136 l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~ 167 (599)
+...+.++|++|-| ++..|...+.-++|+..
T Consensus 84 i~~aD~ivFvtPqY-N~gypA~LKNAlD~lyh 114 (199)
T KOG4530|consen 84 ILEADSIVFVTPQY-NFGYPAPLKNALDWLYH 114 (199)
T ss_pred HhhcceEEEecccc-cCCCchHHHHHHHHhhh
Confidence 44678999999999 66667777778888865
No 157
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.86 E-value=64 Score=30.78 Aligned_cols=88 Identities=13% Similarity=0.254 Sum_probs=45.6
Q ss_pred hcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCC-CCchHHHhhhccC--CeEEEEeecCCCCCCCh
Q 007547 80 AAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKE--TLAFFMVATYGDGEPTD 156 (599)
Q Consensus 80 ~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~-~~~~~~~~~l~~~--~~vif~~sTyG~G~~p~ 156 (599)
...+.+|.++ |.++..++++++.|+++|+++++.-..---++ .+++.++..+... ++++++..+-
T Consensus 45 ~~~~~~ifll-----G~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~P------- 112 (172)
T PF03808_consen 45 EQRGKRIFLL-----GGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAP------- 112 (172)
T ss_pred HHcCCeEEEE-----eCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC-------
Confidence 3455565554 45566666666777778887665433221122 2234466666544 4555544332
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEeecC
Q 007547 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (599)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~aVFGlGd 187 (599)
.-+.|....... +... .++|+|.
T Consensus 113 kQE~~~~~~~~~------l~~~--v~i~vG~ 135 (172)
T PF03808_consen 113 KQERWIARHRQR------LPAG--VIIGVGG 135 (172)
T ss_pred HHHHHHHHHHHH------CCCC--EEEEECc
Confidence 334566665553 3323 5666664
No 158
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=57.54 E-value=29 Score=29.32 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=29.8
Q ss_pred EEEEEeeeecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 007547 297 VNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (599)
Q Consensus 297 a~V~~~~~L~~~~~~r~~~hle~di~~~--~l~Y~~GD~l~V~p~ 339 (599)
|+|++.++++ .++.+++|.+++. .+.|+||.|+.|.-.
T Consensus 2 ~~v~~~~~~s-----~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELS-----PDVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEES-----SSEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeC-----CCeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 6888899997 3788999988843 478999999999877
No 159
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=56.31 E-value=2.1e+02 Score=28.31 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=90.8
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCC---------------------CCc-------hH
Q 007547 83 KTKVTVFYGTQTG---TAEGFAKALAEEIKARYEKAAVKVVDLDDYA---------------------MDD-------EQ 131 (599)
Q Consensus 83 ~~~v~I~YgSqtG---tte~~A~~la~~l~~~~~g~~v~v~dl~d~~---------------------~~~-------~~ 131 (599)
|++|+++=+|..| -+..+++.+.+..++.+++.++...||..-. .++ ++
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 4678888888774 3577888888888888777777666664211 101 34
Q ss_pred HHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCcEEEEEeecCcchhH----HHHHHHH
Q 007547 132 YEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYEH----FNKIGIV 199 (599)
Q Consensus 132 ~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~----f~~~~k~ 199 (599)
+++++...+.+||+.|=| +-..|...+.+++.+..... ....+.+||+.++..==--|.+ ++-....
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 677788899999999999 88888889999998865321 1356888999998742223544 5667778
Q ss_pred HHHHHHHCCCeEE
Q 007547 200 LDEELCKQGGARL 212 (599)
Q Consensus 200 ld~~L~~lGa~~i 212 (599)
|...|.=+|.+-+
T Consensus 160 Lr~ilgF~Gitd~ 172 (202)
T COG1182 160 LRTILGFLGITDV 172 (202)
T ss_pred HHHHhhhcCCCcc
Confidence 8888877888643
No 160
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=55.46 E-value=23 Score=30.47 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEe
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVD 121 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~d 121 (599)
.+|+++.||-.||+..+|.++.+.+.++ |+.+++..
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~--gi~~~v~~ 38 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQ 38 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 3799999999999999999999999988 88777664
No 161
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=54.43 E-value=57 Score=33.07 Aligned_cols=90 Identities=12% Similarity=-0.044 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeCCCCCC---Cc--hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCC
Q 007547 99 GFAKALAEEIKARYEKAAVKVVDLDDYAM---DD--EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGP 173 (599)
Q Consensus 99 ~~A~~la~~l~~~~~g~~v~v~dl~d~~~---~~--~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~ 173 (599)
.-++.+++.|.+. |+.+..+.+=++.. .. +..+..+.+++.+||.|++- .+.|.++|.....+
T Consensus 13 ~~~~~l~~~l~~~--G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~na--------V~~~~~~l~~~~~~-- 80 (255)
T PRK05752 13 EECAALAASLAEA--GIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPA--------ARLGLELLDRYWPQ-- 80 (255)
T ss_pred HHHHHHHHHHHHc--CCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHH--------HHHHHHHHHhhCCC--
Confidence 3456777777777 77655443222111 10 11334577888877777543 56678888653322
Q ss_pred CCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 174 ~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
..+.++++.| +.-.+.|++.|.+..++
T Consensus 81 -~~~~~~~aVG-------------~~Ta~al~~~G~~~~~~ 107 (255)
T PRK05752 81 -PPQQPWFSVG-------------AATAAILQDYGLDVSYP 107 (255)
T ss_pred -CcCCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 4457788877 44555666778765443
No 162
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=53.62 E-value=1.5e+02 Score=26.48 Aligned_cols=108 Identities=11% Similarity=-0.032 Sum_probs=64.2
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCe-EEEEeecCCCCCCChhHHHHHHHHh
Q 007547 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNAARFYKWFT 166 (599)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~-vif~~sTyG~G~~p~na~~F~~~L~ 166 (599)
|+.++--|.-..+...+...+-+.. | .+++++-...+.+ ++.....+.+. +|++|++. +.....+..+.+.|+
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~-G--~~vi~lG~~vp~e-~~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L~ 75 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDA-G--FEVIYTGLRQTPE-EIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLR 75 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHC-C--CEEEECCCCCCHH-HHHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHHH
Confidence 4556666777777777766665443 4 5567765433322 35555555543 55555554 455567788888888
Q ss_pred cCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecce
Q 007547 167 EGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (599)
Q Consensus 167 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (599)
+.. +.+.++.+=| . ..+...++|+++|...++..+
T Consensus 76 ~~~-----~~~i~i~~GG--~--------~~~~~~~~~~~~G~d~~~~~~ 110 (122)
T cd02071 76 ELG-----AGDILVVGGG--I--------IPPEDYELLKEMGVAEIFGPG 110 (122)
T ss_pred hcC-----CCCCEEEEEC--C--------CCHHHHHHHHHCCCCEEECCC
Confidence 753 3345544444 2 124445788899998887655
No 163
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=52.29 E-value=1.8e+02 Score=28.39 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=63.8
Q ss_pred CCeEEEE----EECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCC-eEEEEeecCCCCCCCh-
Q 007547 83 KTKVTVF----YGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDGEPTD- 156 (599)
Q Consensus 83 ~~~v~I~----YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~-~vif~~sTyG~G~~p~- 156 (599)
|++|.|+ +-+.+|--|.+|+.|+..+.++ |+++.|+...+..... ...++ .=++-.++-..|..-.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~--g~~v~Vyc~~~~~~~~------~~~y~gv~l~~i~~~~~g~~~si 72 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSK--GIDVTVYCRSDYYPYK------EFEYNGVRLVYIPAPKNGSAESI 72 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcC--CceEEEEEccCCCCCC------CcccCCeEEEEeCCCCCCchHHH
Confidence 3455555 3356999999999999999988 8999998776554333 33332 3444456665663221
Q ss_pred --hHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 157 --NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 157 --na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
+...+..-+.-... +..+.--+-++|.+... +.--+-..|...|.+.+...
T Consensus 73 ~yd~~sl~~al~~~~~--~~~~~~ii~ilg~~~g~------~~~~~~r~~~~~g~~v~vN~ 125 (185)
T PF09314_consen 73 IYDFLSLLHALRFIKQ--DKIKYDIILILGYGIGP------FFLPFLRKLRKKGGKVVVNM 125 (185)
T ss_pred HHHHHHHHHHHHHHhh--ccccCCEEEEEcCCccH------HHHHHHHhhhhcCCcEEECC
Confidence 12222222211000 00222245566644222 23344556667788777653
No 164
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=51.11 E-value=1.4e+02 Score=33.20 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=75.3
Q ss_pred eEEEEEECCC-------chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc---hHHHhhhcc--CCeEEEEeecCCCC
Q 007547 85 KVTVFYGTQT-------GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD---EQYEEKLKK--ETLAFFMVATYGDG 152 (599)
Q Consensus 85 ~v~I~YgSqt-------Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~---~~~~~~l~~--~~~vif~~sTyG~G 152 (599)
++.++-+|+. ..+++.++++.+.|.+. + +++++....+.+. ..+.+.+.. -+.+|+..+|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNEL--P--VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcC--C--ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 4566666666 34677777777777654 4 4555555443111 123333443 47888999999654
Q ss_pred CCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCc--------chhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCc
Q 007547 153 EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR--------QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCI 224 (599)
Q Consensus 153 ~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds--------~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~ 224 (599)
. .....++. + ++.+.+++..+. .+.-+|. ...+-..|.+.|.+...-.|..++ ...
T Consensus 78 ~------~~~~~~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g-~~~~~~~l~r~gi~~~~v~g~~~d-~~~ 141 (452)
T cd00578 78 K------MWIAGLSE-------L-RKPVLLLATQFNREIPDFMNLNQSACG-LREFGNILARLGIPFKVVYGHWKD-EDV 141 (452)
T ss_pred H------HHHHHHHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhh-hHHHHHHHHHcCCceeEEECCCCC-HHH
Confidence 2 22333333 2 467888887654 2344554 366777888999875433333222 245
Q ss_pred HHHHHHHHHH
Q 007547 225 EDDFTAWREL 234 (599)
Q Consensus 225 e~~~~~W~~~ 234 (599)
.+.+..|..-
T Consensus 142 ~~~i~~~~ra 151 (452)
T cd00578 142 LRKIESWARA 151 (452)
T ss_pred HHHHHHHHHH
Confidence 6778888763
No 165
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=50.28 E-value=20 Score=39.25 Aligned_cols=127 Identities=12% Similarity=-0.037 Sum_probs=84.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhcc-CCeEEEEeecCCCCCCChhHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~-~~~vif~~sTyG~G~~p~na~~ 160 (599)
.-.-++|.=+=++|-+..+|+.|++.+.+.|= + .++.- .++...+..+.. +-.+++.+-|.-.|.+.+-.++
T Consensus 356 hcalslVgepi~yp~in~f~k~lH~k~issfl---v--tnaq~--pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkd 428 (601)
T KOG1160|consen 356 HCALSLVGEPIMYPEINPFAKLLHQKLISSFL---V--TNAQF--PEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKD 428 (601)
T ss_pred hheeeeecccccchhhhHHHHHHHhccchHHh---c--ccccC--hHHHhchhhhheeEEEEeecchhhhcCCCCchHHH
Confidence 34567888889999999999999998876532 1 11110 111000111222 2245555666667888888999
Q ss_pred HHHHHhcCCCC---CCCCCCcEEEEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 161 FYKWFTEGNDR---GPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 161 F~~~L~~~~~~---~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
||+||.+.... .....-.++.+.|.||+.- ..||.+++-+-.+++-+|++.+.+.
T Consensus 429 FwEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ges 488 (601)
T KOG1160|consen 429 FWERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGES 488 (601)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEeccc
Confidence 99998753211 1223446789999898874 7899999999999999999887653
No 166
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=48.36 E-value=93 Score=30.69 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=54.6
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEe---CCCCCCCc-hHHHhhhccCCeEEEEeecCCCCCCChhHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVD---LDDYAMDD-EQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~d---l~d~~~~~-~~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (599)
++|+|...+ .-+..+++.|.+. |+++..+. +...+... ......+..++.+||.|++ .+.
T Consensus 2 ~~ilitr~~------~~~~~l~~~l~~~--G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~--------av~ 65 (249)
T PRK05928 2 MKILVTRPS------PKAEELVELLREL--GFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKN--------AVE 65 (249)
T ss_pred CEEEEeCCH------HHHHHHHHHHHHc--CCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHH--------HHH
Confidence 555555332 2344556666666 66654432 22211110 1122335677888887754 367
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
.|++++.+. ....+.+.++.+.| +...+.|++.|.+..
T Consensus 66 ~~~~~~~~~--~~~~~~~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 66 FLLSALKKK--KLKWPKNKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred HHHHHHHhc--CcCCCCCCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 788888721 11336778888887 455566778887653
No 167
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=48.20 E-value=35 Score=31.45 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=31.0
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc
Q 007547 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD 129 (599)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~ 129 (599)
-+++|.|.|...+..|+.|.+.+.++ |..+++..+.+.+..+
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~--g~~v~~~~i~~l~~~~ 65 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEK--GINVEVVEIEGLQTED 65 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHT--T-EEEEEE---E----
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeeeecccc
Confidence 79999999999999999999999987 7888877655554433
No 168
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=47.35 E-value=39 Score=33.41 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=33.0
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecCC-CCccCCCCeEEEeccCC
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENC 341 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~~-~l~Y~~GD~l~V~p~N~ 341 (599)
|.++|++.+.++. +++++.|+.+.. .+.|+||.++.|..++.
T Consensus 1 ~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~ 43 (232)
T cd06212 1 FVGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPGT 43 (232)
T ss_pred CceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCCC
Confidence 4588888888863 688888987653 57999999999986543
No 169
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=47.29 E-value=49 Score=27.68 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=30.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEE--EeCCCC
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV--VDLDDY 125 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v--~dl~d~ 125 (599)
++|++++||--||+..++.+|.+.+.+. +....+ .++++.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~--~~~~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKA--GLEIPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC--CCceEEEEcchhhC
Confidence 4799999999999999999999999876 554333 344444
No 170
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=45.80 E-value=56 Score=34.77 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=54.5
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchH-HHhhhccCCeEEEEeecCCCCCCChhHH
Q 007547 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~-~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (599)
++..-++|-|||+++.+.+.|+.|.+ + |+++.++|+....+=+.+ +...+.+.+.+|++=-.+-.|..-..
T Consensus 200 ~G~di~iva~G~~~~~a~eAa~~L~~----~--Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~-- 271 (327)
T PRK09212 200 EGSDVTIVTFSIQVKLALEAAELLEK----E--GISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAE-- 271 (327)
T ss_pred eCCCEEEEEccHHHHHHHHHHHHHHh----c--CCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHH--
Confidence 45566788899999998888887743 5 788889988776655533 55566777888888777756665444
Q ss_pred HHHHHHhc
Q 007547 160 RFYKWFTE 167 (599)
Q Consensus 160 ~F~~~L~~ 167 (599)
+.++|.+
T Consensus 272 -la~~l~~ 278 (327)
T PRK09212 272 -IAALIMK 278 (327)
T ss_pred -HHHHHHH
Confidence 4455544
No 171
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=45.55 E-value=1.1e+02 Score=31.31 Aligned_cols=97 Identities=7% Similarity=0.008 Sum_probs=55.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeC---CCCC-CCchHHHhhhccCCeEEEEeecCCCCCCChhH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDL---DDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl---~d~~-~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na 158 (599)
.++|+|- -.+.-++.+++.|++. |.++-.+.+ ...+ ...+..+..|.+++.+||.|++- .
T Consensus 18 g~~IlvT------Rp~~q~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA--------V 81 (266)
T PRK08811 18 AWTLISL------RPSGEHAPLRRAVARH--GGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA--------V 81 (266)
T ss_pred CCEEEEe------CCHHHHHHHHHHHHHC--CCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH--------H
Confidence 5566664 2344567777888777 666544433 2111 11112445677889888877533 4
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
+.|..++ +. .++.+.++++.| +.-.+.|++.|.....
T Consensus 82 ~~~~~~~-~~----~~~~~~~~~AVG-------------~~TA~aL~~~G~~~~~ 118 (266)
T PRK08811 82 RAAHRLL-PL----QRPARAHWLSVG-------------EGTARALQACGIDEVV 118 (266)
T ss_pred HHHHHHh-cc----cCccCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 4455443 21 236778888887 4445566778876543
No 172
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.20 E-value=4e+02 Score=28.15 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=77.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhh---hccC---CeEEEEeecC-------
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK---LKKE---TLAFFMVATY------- 149 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~---l~~~---~~vif~~sTy------- 149 (599)
..++.|+....--.+..|++...+.+.+- |+.++++.+.+-..+ ++++.. +.++ +.+++-.|--
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~t~-~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~ 109 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEA--GIRSLEHRLPADTSQ-ARLLALIAELNADPSVNGILLQLPLPAHIDEAR 109 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCH-HHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHH
Confidence 45678888877788899999888888877 888888888643222 223333 3322 3566655532
Q ss_pred ------------------------C-CCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHH
Q 007547 150 ------------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (599)
Q Consensus 150 ------------------------G-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L 204 (599)
| .+-.|-++..-++.|+... ..++|++++|+|.|.. +++-+...|
T Consensus 110 i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~---i~l~Gk~V~vIG~s~i-------vG~PmA~~L 179 (301)
T PRK14194 110 VLQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTC---GDLTGKHAVVIGRSNI-------VGKPMAALL 179 (301)
T ss_pred HHhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhC---CCCCCCEEEEECCCCc-------cHHHHHHHH
Confidence 1 1123555555666666543 3499999999998743 578888899
Q ss_pred HHCCCeEE
Q 007547 205 CKQGGARL 212 (599)
Q Consensus 205 ~~lGa~~i 212 (599)
.+.|++..
T Consensus 180 ~~~gatVt 187 (301)
T PRK14194 180 LQAHCSVT 187 (301)
T ss_pred HHCCCEEE
Confidence 89998764
No 173
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=44.31 E-value=1e+02 Score=30.83 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCCh-hHHHHHHHHhc
Q 007547 100 FAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTD-NAARFYKWFTE 167 (599)
Q Consensus 100 ~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~-na~~F~~~L~~ 167 (599)
+-..|++.|++. |++|.+..+++.+..- -.+.|.+++++|+-+.+ +.++.++ ..+.|.+++.+
T Consensus 24 ~~~~~~~~L~~~--gf~V~~~~~~d~~~~~--~~~~L~~~D~lV~~~~~-~~~~l~~eq~~~l~~~V~~ 87 (215)
T cd03142 24 MHGTIAAALAEY--GFDVQTATLDEPEHGL--TEEVLAETDVLLWWGHI-AHDEVKDEIVERVHRRVLD 87 (215)
T ss_pred HHHHHHHHHHhc--CcEEEEEeccCccccC--CHhHHhcCCEEEEeCCC-CcCcCCHHHHHHHHHHHHc
Confidence 344556666666 7888877776643100 01228889988875444 3556655 56677777765
No 174
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=44.00 E-value=41 Score=33.91 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=30.2
Q ss_pred eeeecCCCCC-CceEEEEEEecCCCCccCCCCeEEEeccC
Q 007547 302 RRELHKPDSD-RSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (599)
Q Consensus 302 ~~~L~~~~~~-r~~~hle~di~~~~l~Y~~GD~l~V~p~N 340 (599)
.+.|.++++. -++++|+|+.++....|+||+++.|.+++
T Consensus 5 ~~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 5 ARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eeeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 3446655553 27999999987667899999999999865
No 175
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=43.48 E-value=64 Score=32.66 Aligned_cols=91 Identities=20% Similarity=0.079 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeCCCCCCC--chHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCC
Q 007547 99 GFAKALAEEIKARYEKAAVKVVDLDDYAMD--DEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (599)
Q Consensus 99 ~~A~~la~~l~~~~~g~~v~v~dl~d~~~~--~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~ 176 (599)
.-|..+++.+... |..+-.+.+=++... -+..+..+..++.++|-|+. ....|++.+.....+ +++
T Consensus 11 ~~~~~~~~~l~~~--G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~--------av~~~~~~l~~~~~~--~~~ 78 (248)
T COG1587 11 EQAEELAALLRKA--GAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPN--------AVRFFFEALKEQGLD--ALK 78 (248)
T ss_pred hhhHHHHHHHHhC--CCcceeecceeeecchhHHHHHhccccCCEEEEECHH--------HHHHHHHHHHhhccc--ccc
Confidence 4456666666666 665444433222221 11134445566766665543 356677777764422 577
Q ss_pred CcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 177 ~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
+.++++.| ..-.+.|+++|.+....
T Consensus 79 ~~~i~aVG-------------~~Ta~~l~~~G~~~~~~ 103 (248)
T COG1587 79 NKKIAAVG-------------EKTAEALRKLGIKVDFI 103 (248)
T ss_pred cCeEEEEc-------------HHHHHHHHHhCCCCCcC
Confidence 89999998 56677888999876554
No 176
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=43.35 E-value=36 Score=35.22 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=38.0
Q ss_pred HhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEE
Q 007547 79 IAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFM 145 (599)
Q Consensus 79 ~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~ 145 (599)
+-+..+++.|+|.+.+-++....+.+.+.+.+. |+++..+.+.+.+. -...+..+.+..-++++
T Consensus 127 l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~--g~~l~~~~v~~~~~-~~~~~~~l~~~~da~~~ 190 (294)
T PF04392_consen 127 LFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKL--GIELVEIPVPSSED-LEQALEALAEKVDALYL 190 (294)
T ss_dssp HSTT--EEEEEEETT-HHHHHHHHHHHHHHHHT--T-EEEEEEESSGGG-HHHHHHHHCTT-SEEEE
T ss_pred hCCCCCEEEEEecCCCccHHHHHHHHHHHHHHc--CCEEEEEecCcHhH-HHHHHHHhhccCCEEEE
Confidence 334678999999999988888888888888766 77766666654321 12344455443333333
No 177
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=42.79 E-value=56 Score=26.99 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=29.1
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCe--EEEEeCCC
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAA--VKVVDLDD 124 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~--v~v~dl~d 124 (599)
+++|+.++-.|++..++.+|.+.+.+. +.. +...++++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~--~i~~~~~~~~~~~ 40 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKEL--GIEAEVEHTDLGS 40 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHC--CCcEEEEEecccc
Confidence 488999999999999999999999765 554 23334444
No 178
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=42.49 E-value=51 Score=27.33 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=31.6
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD 123 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~ 123 (599)
||+++.++--||+..+|++|.+.+.++ |+++.+....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~--gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKEL--GIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHT--TECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhc--cCceEEEEec
Confidence 689999999999999999999999988 7776665444
No 179
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=41.30 E-value=91 Score=35.03 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhCCCeEEEE---eCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCC
Q 007547 98 EGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (599)
Q Consensus 98 e~~A~~la~~l~~~~~g~~v~v~---dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~ 174 (599)
+.-|..+++.|++. |+++-.+ .+...+.. +..+.++.+++-+||-|+. ....|+++|.+...+-..
T Consensus 260 ~~q~~~l~~~L~~~--GA~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~n--------gV~~Ff~~l~~~~~D~R~ 328 (474)
T PRK07168 260 TNKTSVMKQKLQEA--GAEIYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSAE--------SVEILMQSCSKYKKDIRS 328 (474)
T ss_pred HHHHHHHHHHHHHc--CCEEEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCHH--------HHHHHHHHHHHcCCChHH
Confidence 34466777778777 6654333 22222221 3467778888866665543 367788999875543223
Q ss_pred CCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeE
Q 007547 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (599)
|. .++|+.| ....+.|++.|...
T Consensus 329 l~-~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 329 LQ-AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred hC-CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 44 6888887 55566778888754
No 180
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=41.27 E-value=90 Score=31.80 Aligned_cols=82 Identities=10% Similarity=0.011 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc-cCCe-EEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCC
Q 007547 98 EGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK-KETL-AFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWL 175 (599)
Q Consensus 98 e~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~-~~~~-vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l 175 (599)
.++|++|++.+.+. |+.+...+--..|-.---.+.-+. +.++ +|-++-.. +..|...-+|=+.|.. +
T Consensus 80 ~eLa~~i~~~l~~~--gi~~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~--~~~~~~~~~lG~aL~~-------l 148 (253)
T cd07363 80 PELAERVAELLKAA--GIPARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPA--SLDPAEHYALGRALAP-------L 148 (253)
T ss_pred HHHHHHHHHHHHhc--CCCccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecC--CCCHHHHHHHHHHHHh-------h
Confidence 45899999999887 776654331112211100111122 2333 33333222 2344444445555655 4
Q ss_pred CCcEEEEEeecCcch
Q 007547 176 QQLKFGVFGLGNRQY 190 (599)
Q Consensus 176 ~~~~~aVFGlGds~Y 190 (599)
...+++|+|.|+.+.
T Consensus 149 ~~~~v~ii~SG~lsH 163 (253)
T cd07363 149 RDEGVLIIGSGSSVH 163 (253)
T ss_pred hhCCEEEEecCccee
Confidence 456899999998874
No 181
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=40.81 E-value=41 Score=29.65 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=28.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~ 120 (599)
+++|+++.|+-.+|+ -+|+++.+.++++ |+.+++.
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~--gi~~~i~ 35 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQ--GKDIEVD 35 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHC--CCceEEE
Confidence 467999999998666 9999998888888 7776553
No 182
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.60 E-value=3.5e+02 Score=27.23 Aligned_cols=126 Identities=13% Similarity=0.026 Sum_probs=72.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCC---CCCc----hHHHhhhccCCeEEEEeecCCCCCCC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY---AMDD----EQYEEKLKKETLAFFMVATYGDGEPT 155 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~---~~~~----~~~~~~l~~~~~vif~~sTyG~G~~p 155 (599)
++++.|+|.-++|. ++.+.|. .+ ++...++.+.++ -.+. ++++..+++.+++| +.+. -|
T Consensus 1 ~mki~vlt~g~yG~--R~~~nl~----~~--~f~~~~v~v~~~Pe~~~~fie~P~~~Lp~~~e~Di~v--a~~l----HP 66 (224)
T COG1810 1 MMKILVLTDGEYGK--RAVNNLA----CK--GFKNQFVAVKEYPEELPDFIEEPEDLLPKLPEADIVV--AYGL----HP 66 (224)
T ss_pred CcEEEEEeeccchH--HHHHhHh----hh--ccccceEEEEeccccccchhhCHHHhcCCCCCCCEEE--Eecc----Cc
Confidence 57899999988883 4444443 33 232333322222 1111 22444455555444 3333 45
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHH
Q 007547 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELV 235 (599)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l 235 (599)
|.-...-+... ..+.+.-|.+.++.. +.-++|.+...++|++...|.-.|+-.... ..|.+.+
T Consensus 67 Dl~~~L~e~~~--------~~~~~alIvp~~~~~-----g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~----~p~i~~F 129 (224)
T COG1810 67 DLLLALPEKAA--------EGGVKALIVPAEPPE-----GLRKQLKEFCEELGVEFEAPEPFCSLEPNE----NPHIDEF 129 (224)
T ss_pred cHHHHHHHHHH--------hCCccEEEEecCCCh-----hHHHHHHHHhhhcceeeecCCccccCCCCC----ChHHHHH
Confidence 65444444432 457888999966554 677999999999999988887666643322 5566555
Q ss_pred HHHH
Q 007547 236 WPEL 239 (599)
Q Consensus 236 ~~~L 239 (599)
.+..
T Consensus 130 ~e~F 133 (224)
T COG1810 130 AERF 133 (224)
T ss_pred HHHc
Confidence 4443
No 183
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=40.21 E-value=1.2e+02 Score=29.61 Aligned_cols=89 Identities=20% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCCC----CchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCC
Q 007547 101 AKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (599)
Q Consensus 101 A~~la~~l~~~~~g~~v~v~dl~d~~~----~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~ 176 (599)
+..+.+.|.+. |+.+..+.+-+... ........+...+.+||.|+. .+..|++.+.... ...+.
T Consensus 10 ~~~l~~~L~~~--G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~--------av~~~~~~~~~~~--~~~~~ 77 (239)
T cd06578 10 ADELAALLEAL--GAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPN--------AVEAFFEALEELG--LRALA 77 (239)
T ss_pred hHHHHHHHHHc--CCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHH--------HHHHHHHHHHhhC--Ccccc
Confidence 56677777777 77655443322211 111233445567777777764 3677777776532 12367
Q ss_pred CcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 177 ~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
+.++.+.| +...+.|++.|.+....
T Consensus 78 ~~~~~avG-------------~~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 78 GLKIAAVG-------------PKTAEALREAGLTADFV 102 (239)
T ss_pred CCEEEEEC-------------HHHHHHHHHcCCCceeC
Confidence 88888887 66777888999887654
No 184
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=39.75 E-value=5.6 Score=34.78 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhc
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA 515 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l 515 (599)
+..+|||+|+|. .+.+.+.|+. .|-.|.-|.+.
T Consensus 49 q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~ 81 (105)
T PF08022_consen 49 QWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEH 81 (105)
T ss_dssp ----------------------------------------------
T ss_pred cccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHH
Confidence 677999999987 6788888876 45556666654
No 185
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=39.67 E-value=29 Score=31.57 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=34.6
Q ss_pred EEEEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHH
Q 007547 179 KFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 179 ~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
+++|+-.||.-+ .-++.....+.++|++.|++........|+...+.+.+++|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 478888888765 44577788999999999998655433334432334444444
No 186
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=38.85 E-value=1.6e+02 Score=28.57 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=55.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEE---EEeCCCCCCCchHHHhhhccCCe-EEEEeecCCCCCCChhHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK---VVDLDDYAMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~---v~dl~d~~~~~~~~~~~l~~~~~-vif~~sTyG~G~~p~na~ 159 (599)
.+..|+|..--+....+++.|.+ . |+.+. ++.....+.. +.....+..... +|+++|.. .+.
T Consensus 121 ~~~~il~~~g~~~~~~l~~~L~~----~--g~~v~~~~~Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~-------~v~ 186 (239)
T cd06578 121 KGKRILRPRGGRAREDLAEALRE----R--GAEVDEVEVYRTVPPDLD-AELLELLEEGAIDAVLFTSPS-------TVR 186 (239)
T ss_pred CCCEEEEEcCcchhHHHHHHHHH----C--CCEEEEEEEEEEECCCCc-HHHHHHHHcCCCcEEEEeCHH-------HHH
Confidence 45566666655555555555543 4 44433 3333322211 112333433322 34444433 578
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
.|.+++.... ..++.+.++.++| ....+.|++.|.+.+..
T Consensus 187 ~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~~ 226 (239)
T cd06578 187 NLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVIV 226 (239)
T ss_pred HHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCceee
Confidence 8888887532 1236778888887 66777888889876653
No 187
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=38.17 E-value=1.5e+02 Score=31.84 Aligned_cols=91 Identities=9% Similarity=0.106 Sum_probs=54.7
Q ss_pred CCCeEEEEEECCCchHHH---HHHHHHHHHHhhhCCCeEEEEeCCCCC-CCchHHHhhhccCCeEEEEeecCCCCCCChh
Q 007547 82 GKTKVTVFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDN 157 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~---~A~~la~~l~~~~~g~~v~v~dl~d~~-~~~~~~~~~l~~~~~vif~~sTyG~G~~p~n 157 (599)
+-++|.|+|.+.. ..+. .++.+.+.+++. |+.+......+.. .+-..++.++.+..-+|+++..+ +.
T Consensus 136 ~W~~vaiiy~~~~-~~~~~~~~~~~l~~~~~~~--gi~v~~~~~~~~~~~d~~~~l~~ik~~~rvii~~~~~------~~ 206 (387)
T cd06386 136 HWRSALLVYEDDK-QERNCYFTLEGVHHVFQEE--GYHMSIYPFDETKDLDLDEIIRAIQASERVVIMCAGA------DT 206 (387)
T ss_pred CCeEEEEEEEcCC-CCccceehHHHHHHHHHhc--CceEEEEecCCCCcccHHHHHHHHHhcCcEEEEecCH------HH
Confidence 5678999996442 2233 277777888776 7666554433221 12234666676655566665544 57
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEeec
Q 007547 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLG 186 (599)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlG 186 (599)
+..|+....+.. +.+..|+.+.++
T Consensus 207 ~~~ll~~A~~~g-----m~~~~yv~i~~d 230 (387)
T cd06386 207 IRSIMLAAHRRG-----LTSGDYIFFNIE 230 (387)
T ss_pred HHHHHHHHHHcC-----CCCCCEEEEEEe
Confidence 788888877654 445566666654
No 188
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=38.07 E-value=45 Score=28.73 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=29.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~ 120 (599)
+++|+++.|+--+|+ -+++++.+.+.++ |+++++.
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~--gi~~~v~ 37 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEY--GVPVKIA 37 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHC--CCcEEEE
Confidence 578999999988876 5899999999988 7776554
No 189
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.71 E-value=1.6e+02 Score=27.53 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=65.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhh-ccCCeEEEEeecCCCCCCChhHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-KKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l-~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
+.+|+|.==-+-|.... |+-+++.|++. |++| ++.--...-+ ++.... .+.--+|.+|+++|... .-+...
T Consensus 12 rprvlvak~GlDgHd~g-akvia~~l~d~--GfeV--i~~g~~~tp~-e~v~aA~~~dv~vIgvSsl~g~h~--~l~~~l 83 (143)
T COG2185 12 RPRVLVAKLGLDGHDRG-AKVIARALADA--GFEV--INLGLFQTPE-EAVRAAVEEDVDVIGVSSLDGGHL--TLVPGL 83 (143)
T ss_pred CceEEEeccCccccccc-hHHHHHHHHhC--CceE--EecCCcCCHH-HHHHHHHhcCCCEEEEEeccchHH--HHHHHH
Confidence 33444443335666655 67777778776 7654 4444333332 344444 45556777788886655 567778
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecce
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (599)
.+.|++.. ..... |++=|+-.-+. ...|++.|..+++..+
T Consensus 84 ve~lre~G-----~~~i~--v~~GGvip~~d--------~~~l~~~G~~~if~pg 123 (143)
T COG2185 84 VEALREAG-----VEDIL--VVVGGVIPPGD--------YQELKEMGVDRIFGPG 123 (143)
T ss_pred HHHHHHhC-----CcceE--EeecCccCchh--------HHHHHHhCcceeeCCC
Confidence 88888754 23332 33335443322 4578899999998754
No 190
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=37.70 E-value=63 Score=25.69 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCe
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAA 116 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~ 116 (599)
+++++.++-.|++..++++|.+.+.+. +..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~--~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKEL--GIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHC--CCe
Confidence 477888888899999999999999876 553
No 191
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=37.52 E-value=1.5e+02 Score=31.70 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=67.6
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~ 164 (599)
.++++||=..|.-+-+|+.|.+.+.++ |..+-|++..-...+- .. +|+.=....+.++..|+++
T Consensus 77 ~vVl~HGL~G~s~s~y~r~L~~~~~~r--g~~~Vv~~~Rgcs~~~-------n~-------~p~~yh~G~t~D~~~~l~~ 140 (345)
T COG0429 77 LVVLFHGLEGSSNSPYARGLMRALSRR--GWLVVVFHFRGCSGEA-------NT-------SPRLYHSGETEDIRFFLDW 140 (345)
T ss_pred eEEEEeccCCCCcCHHHHHHHHHHHhc--CCeEEEEecccccCCc-------cc-------CcceecccchhHHHHHHHH
Confidence 788899988888888999999999999 8888888876554322 11 1222133334788999999
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
++.. ....++..+|. +. .+..+...|-+-|.+..
T Consensus 141 l~~~------~~~r~~~avG~---SL-----GgnmLa~ylgeeg~d~~ 174 (345)
T COG0429 141 LKAR------FPPRPLYAVGF---SL-----GGNMLANYLGEEGDDLP 174 (345)
T ss_pred HHHh------CCCCceEEEEe---cc-----cHHHHHHHHHhhccCcc
Confidence 9874 45677788773 11 24566667766666543
No 192
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=37.29 E-value=1.7e+02 Score=31.32 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCC-eEEEEeecCCCCCCChhHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~-~vif~~sTyG~G~~p~na~~ 160 (599)
+-+++.|+|.+..|..+ .+.+.+.+.+. |+.+.+..+..-+.+-...+.+++..+ -+||+...+ +.+..
T Consensus 138 ~wk~vaily~~~~g~~~--l~~~~~~~~~~--g~~v~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~------~~~~~ 207 (384)
T cd06393 138 KWRSATVVYDDSTGLIR--LQELIMAPSRY--NIRLKIRQLPTDSDDARPLLKEMKRGREFRIIFDCSH------QMAAQ 207 (384)
T ss_pred CCcEEEEEEeCchhHHH--HHHHHHhhhcc--CceEEEEECCCCchHHHHHHHHHhhcCceEEEEECCH------HHHHH
Confidence 56899999987665444 23455555544 555543333211111123566666543 333443333 56777
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCc
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNR 188 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds 188 (599)
|++.+.+.. +....|+ +++.+-
T Consensus 208 il~qa~~~g-----m~~~~~~-~~~~~~ 229 (384)
T cd06393 208 ILKQAMAMG-----MMTEYYH-FIFTTL 229 (384)
T ss_pred HHHHHHHhc-----cccCceE-EEEccC
Confidence 888887765 4455565 565544
No 193
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.21 E-value=5e+02 Score=27.02 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeE
Q 007547 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (599)
Q Consensus 154 ~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (599)
.|-+...|++.|+.... .++|+++.|+|-| +-++|-+...|.+.||+.
T Consensus 139 ~p~T~~gii~~L~~~~i---~l~Gk~vvViG~g-------g~vGkpia~~L~~~gatV 186 (283)
T PRK14192 139 GSATPAGIMRLLKAYNI---ELAGKHAVVVGRS-------AILGKPMAMMLLNANATV 186 (283)
T ss_pred cCCcHHHHHHHHHHcCC---CCCCCEEEEECCc-------HHHHHHHHHHHHhCCCEE
Confidence 35555779998876543 3999999999954 336888888999999943
No 194
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=36.76 E-value=63 Score=31.53 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=32.0
Q ss_pred eEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 007547 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (599)
Q Consensus 296 ~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~ 341 (599)
.++|++.+.++ .+++++.|+.++ .+.|+||.++.|..+++
T Consensus 2 ~~~v~~~~~~~-----~~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 2 TVTLLSIEPVT-----HDVKRLRFDKPE-GYDFTPGQATEVAIDKP 41 (218)
T ss_pred ceEEEEEEEcC-----CCeEEEEEcCCC-cCCCCCCCEEEEEeeCC
Confidence 47788888886 368899998765 68999999999986543
No 195
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=36.47 E-value=2.1e+02 Score=28.86 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=60.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE---eCCCCCCCchHH--HhhhccCCeEEEEeecCCCCCCChh
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQY--EEKLKKETLAFFMVATYGDGEPTDN 157 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~---dl~d~~~~~~~~--~~~l~~~~~vif~~sTyG~G~~p~n 157 (599)
+++|+|+-+.... +.|.+.|.++ |+.+..+ +..-...+.... .-.....+.++|-||..
T Consensus 123 ~~~vl~~~~~~~r------~~l~~~L~~~--G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~-------- 186 (248)
T COG1587 123 GKRVLILRGNGGR------EVLEEKLEER--GAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSA-------- 186 (248)
T ss_pred CCeEEEEcCCCch------HHHHHHHHhC--CCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHH--------
Confidence 4677766443322 6777778777 7765443 332222221001 11233556666666654
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
++.|++.+...... ++.+++++.+| ....+.++++|.+....
T Consensus 187 v~~~~~~~~~~~~~--~~~~~~v~~IG-------------~~Ta~~l~~~G~~~~~~ 228 (248)
T COG1587 187 VRALLALAPESGIE--FLERKRVASIG-------------PRTAETLKELGITVDIA 228 (248)
T ss_pred HHHHHHHccccchh--HhhCceEEEec-------------HHHHHHHHHcCCcceec
Confidence 88899988764321 45678899888 67778888999886443
No 196
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.36 E-value=5.3e+02 Score=27.09 Aligned_cols=117 Identities=10% Similarity=0.024 Sum_probs=78.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhh---hccC---CeEEEEeecC-------
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK---LKKE---TLAFFMVATY------- 149 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~---l~~~---~~vif~~sTy------- 149 (599)
..++.|+....--.+..|++...+.+.+- |+.++++.+.....+ ++++.. +.++ +.+++-.|=-
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~-~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~ 108 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEA--GMASFEHKLPADTSQ-AELLALIARLNADPAIHGILVQLPLPKHLDSEA 108 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCH-HHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHH
Confidence 45788888888889999999999999887 898888888644222 223333 3332 3555555522
Q ss_pred -----------------C--------CCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHH
Q 007547 150 -----------------G--------DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (599)
Q Consensus 150 -----------------G--------~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L 204 (599)
+ .+-.|-++..-++.|+.... .++|++++|+| ..+.+++-+...|
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i---~~~Gk~V~viG-------rs~~mG~PmA~~L 178 (296)
T PRK14188 109 VIQAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVHG---DLSGLNAVVIG-------RSNLVGKPMAQLL 178 (296)
T ss_pred HHhccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEEc-------CCcchHHHHHHHH
Confidence 0 11235556666666665432 38999999998 2245788888889
Q ss_pred HHCCCeEE
Q 007547 205 CKQGGARL 212 (599)
Q Consensus 205 ~~lGa~~i 212 (599)
.+.|++..
T Consensus 179 ~~~g~tVt 186 (296)
T PRK14188 179 LAANATVT 186 (296)
T ss_pred HhCCCEEE
Confidence 88898654
No 197
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=35.33 E-value=2.6e+02 Score=30.53 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=60.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC---CCCCchHHHhhhccCCeEEEEeecCCCCCCChhHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD---YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d---~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (599)
-.-++|.|||.+|++++.++.+.+ + |.++-++.+.. +..+ ++..-+.+.+.|+++=-++-.|..-.=+.
T Consensus 260 Ae~~iV~~Gs~~~~~~eav~~lr~----~--G~kvg~l~i~~~~PfP~~--~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~ 331 (390)
T PRK08366 260 ADFVFMGMGSLMGTVKEAVDLLRK----E--GYKVGYAKVRWFRPFPKE--ELYEIAESVKGIAVLDRNFSFGQEGILFT 331 (390)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHh----c--CCceeeEEEeeecCCCHH--HHHHHHhcCCEEEEEeCCCCCCcccHHHH
Confidence 346899999999999998887754 3 55555554443 3332 24444667788888866642232212222
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCcch--hHHHHHHHHHHH
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDE 202 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~ 202 (599)
+....|.+... -.-+.-.|.|+|-+.+ ++.-++.+.+.+
T Consensus 332 ev~~~l~~~~~----~~~~~~~i~g~gGr~~t~~~i~~~~~~~~~ 372 (390)
T PRK08366 332 EAKGALYNTDA----RPIMKNYIVGLGGRDFTVNDVKAIAEDMKK 372 (390)
T ss_pred HHHHHHhccCC----CCceeceEeCcCCccCCHHHHHHHHHHHHH
Confidence 22222212110 0114567889988875 555555555443
No 198
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=34.94 E-value=26 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.6
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhh
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKAR 111 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~ 111 (599)
+++|+.++-.|++..++.+|.+.+.+.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~ 28 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEI 28 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCc
Confidence 689999999999999999999888644
No 199
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=34.49 E-value=7.5 Score=34.86 Aligned_cols=58 Identities=26% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhh-hccCCeEEEE
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK-LKKETLAFFM 145 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~-l~~~~~vif~ 145 (599)
+..-++|-|||+...+.+.|+.|.+ + |+.+.++|+.-..+=+.+.+.+ +.+.+.++++
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~----~--Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvv 67 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEE----E--GIKAGVIDLRTIKPFDEEALLESLKKTGRVVVV 67 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHH----T--TCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHS
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHH----c--CCceeEEeeEEEecccccchHHHHHHhcccccc
Confidence 4455677788887777666655544 5 7888888877665555445555 4444444443
No 200
>PTZ00110 helicase; Provisional
Probab=34.46 E-value=4.4e+02 Score=30.09 Aligned_cols=112 Identities=10% Similarity=0.063 Sum_probs=64.5
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCC-eEEEEeecCCCC--------
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDG-------- 152 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~-~vif~~sTyG~G-------- 152 (599)
...+++||..| .+-|+.|++.|... |+.+..+.-+....+.+.++..+.+.+ -+++.+...+.|
T Consensus 376 ~~~k~LIF~~t-----~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~ 448 (545)
T PTZ00110 376 DGDKILIFVET-----KKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKY 448 (545)
T ss_pred cCCeEEEEecC-----hHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCE
Confidence 45577777644 45566777777655 665555533322233344666676654 355555555666
Q ss_pred ----CCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCC
Q 007547 153 ----EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 208 (599)
Q Consensus 153 ----~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lG 208 (599)
++|.+...|+..+....-. --+|.-+.+|-- .-...++.+.+.|++.+
T Consensus 449 VI~~d~P~s~~~yvqRiGRtGR~--G~~G~ai~~~~~------~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 449 VINFDFPNQIEDYVHRIGRTGRA--GAKGASYTFLTP------DKYRLARDLVKVLREAK 500 (545)
T ss_pred EEEeCCCCCHHHHHHHhcccccC--CCCceEEEEECc------chHHHHHHHHHHHHHcc
Confidence 6788888888887653211 124455555542 12345677777777765
No 201
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=34.05 E-value=1.3e+02 Score=25.92 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCC--eEEEEeCCCCCC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKA--AVKVVDLDDYAM 127 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~--~v~v~dl~d~~~ 127 (599)
+++|+.+.|+-=||+-.++.++.+.|+++ |+ .+....++++..
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~--gi~~~~~~~~v~~~~~ 45 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKEL--GIDVDVEQCAVDEIKA 45 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHc--CCCceeeeEEeccccc
Confidence 46899999999999999999999999988 76 455556665543
No 202
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=33.95 E-value=72 Score=36.74 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE--eCCCC
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV--DLDDY 125 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~--dl~d~ 125 (599)
+++||+++.||--||+-.++.++.+.|+++ |+++++. ++.++
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~--GI~veV~~~~Vsev 548 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKR--GIPIIMDSCAVNDY 548 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHc--CCCeEEEEechHhC
Confidence 567899999999999999999999999988 7765433 44444
No 203
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=33.92 E-value=2.3e+02 Score=26.26 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=61.8
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhh-hCCCeEEEEeCCCCCCCchHHHhhh-----ccC-CeEEEEeecC-CCCCCChhH
Q 007547 87 TVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYAMDDEQYEEKL-----KKE-TLAFFMVATY-GDGEPTDNA 158 (599)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~-~~g~~v~v~dl~d~~~~~~~~~~~l-----~~~-~~vif~~sTy-G~G~~p~na 158 (599)
+++||+..+--+...++|.+.+... +..+++..++..+.+..+ ++..+ ... ++||+--+.. .+....+..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~s~slF~~~klvii~~~~~l~~~~~~~~~ 78 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDDIDE--LLEELQSPSLFGDKKLVIIKNAPFLKDKLKKKEI 78 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH---HTTTSTTTTSSSSEEEEEEE-----TT-S-TTHH
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCcHHH--HHHHHhcCCccCCCeEEEEecCccccccccHHHH
Confidence 5899999999999999999996543 111223333444433221 33332 223 3444444433 344455667
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHH
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPE 238 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~ 238 (599)
..|.+++... ..-.+-|+... +.... .+++-+.+++.|...-++ .- .+.++..|..+....
T Consensus 79 ~~l~~~l~~~-------~~~~~lii~~~----~~~~~-~~k~~k~l~~~~~~~~~~--~~-----~~~~~~~~i~~~~~~ 139 (172)
T PF06144_consen 79 KALIEYLSNP-------PPDCILIIFSE----EKLDK-RKKLYKALKKQAIVIECK--KP-----KEQELPRWIKERAKK 139 (172)
T ss_dssp HHHHHHTTT---------SSEEEEEEES-----S--H-HHHHHHHHTTTEEEEEE-----------TTTHHHHHHHHHHH
T ss_pred HHHHHHHhCC-------CCCEEEEEEeC----Cchhh-hhhHHHHHhcccceEEec--CC-----CHHHHHHHHHHHHHH
Confidence 7788888763 33344555432 11222 233555665544322111 11 346677787655443
No 204
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=33.85 E-value=1.3e+02 Score=30.06 Aligned_cols=85 Identities=15% Similarity=-0.011 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhcc-CCeEEEEeecCCCCCCChhHHHH-HHHHhcCCCCCCCCCCc
Q 007547 101 AKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGEPTDNAARF-YKWFTEGNDRGPWLQQL 178 (599)
Q Consensus 101 A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~-~~~vif~~sTyG~G~~p~na~~F-~~~L~~~~~~~~~l~~~ 178 (599)
++.+++.|.+. |+.+..+.+=++....+.....+.. ++.+||.|++ +.++ .++.... ..+.++
T Consensus 12 ~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~n---------aV~~~~~~~~~~----~~~~~~ 76 (240)
T PRK09189 12 AERTAARLRAM--GHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAE---------AVRHLAALGERL----LPHLAL 76 (240)
T ss_pred hHHHHHHHHHC--CCceEEecccccccChhhhhhhhcCCcCEEEEECHH---------HHHHHHhcchhh----HHhcCC
Confidence 45566666666 7776665544433211112222433 4666665543 3333 3321111 125577
Q ss_pred EEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 179 KFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 179 ~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
++++.| +.-.+.|++.|.+.+.
T Consensus 77 ~~~aVG-------------~~Ta~~l~~~G~~~~~ 98 (240)
T PRK09189 77 PLFAVG-------------EATAEAARELGFRHVI 98 (240)
T ss_pred eEEEEc-------------HHHHHHHHHcCCCCCc
Confidence 787777 5556677788987544
No 205
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=33.60 E-value=4.1e+02 Score=27.68 Aligned_cols=136 Identities=10% Similarity=0.026 Sum_probs=68.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhh-hCCCeEEEEeCCCCCCCchHHHhh-----hc-cCCeEEEEeecCCCCCCCh
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYAMDDEQYEEK-----LK-KETLAFFMVATYGDGEPTD 156 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~-~~g~~v~v~dl~d~~~~~~~~~~~-----l~-~~~~vif~~sTyG~G~~p~ 156 (599)
+.++++||....--+.+++.|.+.+... ...+++..+|..+.+.- .+++.. +. ..++|++--+.+..+...+
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~~-~~~~~~~~t~pff~~~rlVvv~~~~~~~~~~~~ 79 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQA-IQALNEAMTPPFGSGGRLVWLKNSPLCQGCSEE 79 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchHH-HHHHHHhcCCCCCCCceEEEEeCchhhccCCHH
Confidence 4689999999999999999998776322 11233444454444310 113332 22 3345554444443333334
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHH
Q 007547 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (599)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~ 236 (599)
....+.+++.+. ..-.+-||-..+. .. .-+++.+.+++.|...-+. ... .-.++++..|..+..
T Consensus 80 ~~~~L~~~l~~~-------~~~~~li~~~~~~----~d-~r~k~~k~l~k~~~~~~~~--~~~--~~~~~~l~~~i~~~~ 143 (326)
T PRK07452 80 LLAELERTLPLI-------PENTHLLLTNTKK----PD-GRLKSTKLLQKLAEEKEFS--LIP--PWDTEGLKQLVERTA 143 (326)
T ss_pred HHHHHHHHHcCC-------CCCcEEEEEeCCC----cc-hHHHHHHHHHHceeEEEec--CCC--cccHHHHHHHHHHHH
Confidence 455677777752 2334555532211 11 2245566666655422221 111 112455778876543
No 206
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=32.77 E-value=3.2e+02 Score=28.98 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=53.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE-eCCCC--CCCchHHHhhhccCCeEEEEeecCCCCCCChhH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDY--AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~-dl~d~--~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na 158 (599)
+.+++.|+|....+.....++.+.+.+++. |..+... .+... ..+-...+.++....-+|+++... +.+
T Consensus 136 ~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~--G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~vii~~~~~------~~~ 207 (389)
T cd06352 136 NWHVAVVVYSDDSENCFFTLEALEAALREF--NLTVSHVVFMEDNSGAEDLLEILQDIKRRSRIIIMCGSS------EDV 207 (389)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHHHHhc--CCeEEEEEEecCCccchhHHHHHHHhhhcceEEEEECCH------HHH
Confidence 356788888877656667788998988766 6554321 12211 111122555565555344443332 467
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEee
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVFGL 185 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGl 185 (599)
..|++.+.... +.+..+.++|.
T Consensus 208 ~~~l~q~~~~g-----~~~~~~~~i~~ 229 (389)
T cd06352 208 RELLLAAHDLG-----LTSGDYVFILI 229 (389)
T ss_pred HHHHHHHHHcC-----CCCCcEEEEEE
Confidence 77888887754 44455777764
No 207
>PF04295 GD_AH_C: D-galactarate dehydratase / Altronate hydrolase, C terminus; InterPro: IPR007392 This domain is found at the C terminus of D-galactarate dehydratase (4.2.1.42 from EC) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, [] and altronate hydrolase (altronic acid hydratase, 4.2.1.7 from EC), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O []. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core []. The N-terminal is represented by IPR007389 from INTERPRO.; GO: 0016836 hydro-lyase activity
Probab=32.36 E-value=4.6e+02 Score=28.79 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
++.|+|+ +.-+-+...|++|++.+... . + . ++.-+-++.+.-+||-|...++.+...
T Consensus 17 RN~v~Ii--ptv~C~~~va~~ia~~~~~~--~-------~-~-----------~~~vdGvv~l~h~~GC~~~g~d~e~~~ 73 (396)
T PF04295_consen 17 RNYVLII--PTVNCSNTVARRIARRFERE--R-------L-A-----------YPNVDGVVALPHPYGCGQLGEDLELTR 73 (396)
T ss_pred ccEEEEE--ecccccHHHHHHHHHHHhhh--h-------c-c-----------cCCCCCeEECCCCCCcCCcchhHHHHH
Confidence 5567777 55567777888888877643 0 0 1 233446889999999999888888888
Q ss_pred HHHhcCCCCCCCCCCc-EEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQL-KFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~-~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L 239 (599)
+.|...... .|. -+-|+|||=-. .-...+.+.+.+.|.+++.-+..-+++. ..-+...+|.+++.+.+
T Consensus 74 rtL~g~a~h----PNvggvlvvgLGCE~-----~~~~~l~~~i~~~g~kpv~~l~iQ~~GGt~~~i~~~~~~~~~l~~~a 144 (396)
T PF04295_consen 74 RTLAGLARH----PNVGGVLVVGLGCEN-----NQPERLAEAIAERGPKPVEFLSIQEEGGTEDTIEAGVELARELLEEA 144 (396)
T ss_pred HHHHHHccC----CCeeeEEEEecCCcc-----CcHHHHHHhhhccCCCceEEEEEeehhhHHHHHHHHHHHHHHHHHHh
Confidence 888775321 222 25677887221 1246666777777877665444334322 22334445665555544
Q ss_pred H
Q 007547 240 D 240 (599)
Q Consensus 240 ~ 240 (599)
.
T Consensus 145 ~ 145 (396)
T PF04295_consen 145 N 145 (396)
T ss_pred c
Confidence 3
No 208
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=32.23 E-value=1e+02 Score=31.05 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=33.4
Q ss_pred CeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 007547 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (599)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~ 341 (599)
|..++|+..++++ .++++++|+.+ ..+.|+||+|+.|..++.
T Consensus 4 ~~~~~V~~~~~~t-----~d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 4 PENMKIVENKEIA-----PNIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred ceEEEEEEEEEec-----CCeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 4568899888887 36888888854 468999999999986654
No 209
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.08 E-value=1.5e+02 Score=26.55 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCeEEEEEECCCchHHHH--HHHHHHHHHhhhCCCeEEEE------eCCCCCCCchHHHhhhccCCeEEEEe
Q 007547 83 KTKVTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVV------DLDDYAMDDEQYEEKLKKETLAFFMV 146 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~--A~~la~~l~~~~~g~~v~v~------dl~d~~~~~~~~~~~l~~~~~vif~~ 146 (599)
+++++++-++.+|-|..| |+.|.+..++. |+.+++- -.+.++.++ +...+++|++.
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~--G~~i~VE~qg~~g~~~~lt~~~------i~~Ad~VIia~ 65 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLE--KWGVKIETQGALGTENRLTDED------IRRADVVLLIT 65 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHC--CCeEEEEecCCcCcCCCCCHHH------HHhCCEEEEEe
Confidence 367888999999988765 58888888877 7776532 123344344 77788888873
No 210
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=31.69 E-value=98 Score=30.33 Aligned_cols=32 Identities=38% Similarity=0.545 Sum_probs=26.4
Q ss_pred CCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 174 ~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
.+++++++|.|+| .+++.+-+.|.+.|++.+.
T Consensus 25 ~l~gk~v~I~G~G--------~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 25 SLEGKTVAVQGLG--------KVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred CCCCCEEEEECCC--------HHHHHHHHHHHHCCCEEEE
Confidence 4899999999987 2577888899999997663
No 211
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.57 E-value=6.4e+02 Score=26.56 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=72.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHh---hhccC---CeEEEEeecCC------
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEE---KLKKE---TLAFFMVATYG------ 150 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~---~l~~~---~~vif~~sTyG------ 150 (599)
..++.|+....--.+..|++...+.+.+- |+.++++++.+...+ ++++. ++.++ +.+++-.|=-.
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~-~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~ 108 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARV--GIASFGKHLPADTSQ-AEVEALIAQLNQDERVDGILLQLPLPKHLDEVP 108 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence 35688888888888999999999999887 899999988643222 22333 33322 45666555321
Q ss_pred -------------------------C-CCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHH
Q 007547 151 -------------------------D-GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (599)
Q Consensus 151 -------------------------~-G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L 204 (599)
+ +-.|-++...++.|+.... .++|+++.|+|=+ +-+++=+...|
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~vvVIGrS-------~iVGkPla~lL 178 (297)
T PRK14186 109 LLHAIDPDKDADGLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQI---DIAGKKAVVVGRS-------ILVGKPLALML 178 (297)
T ss_pred HHhccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHHH
Confidence 0 1124445555555554332 3788888888722 33567777777
Q ss_pred HHCCCeE
Q 007547 205 CKQGGAR 211 (599)
Q Consensus 205 ~~lGa~~ 211 (599)
.+.||+.
T Consensus 179 ~~~~atV 185 (297)
T PRK14186 179 LAANATV 185 (297)
T ss_pred HHCCCEE
Confidence 7777765
No 212
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=31.35 E-value=59 Score=30.31 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=35.8
Q ss_pred cEEEEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHH
Q 007547 178 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 178 ~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
.+++|+-.||..+ .-++.....+.+.|++.|++........||.+.+.+.+..|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 56 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW 56 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH
Confidence 3688888898776 45677778899999999998655433344432333334333
No 213
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=31.21 E-value=63 Score=32.02 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=31.1
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecCCC---CccCCCCeEEEeccC
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTG---ITYETGDHVGVYVEN 340 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~~~---l~Y~~GD~l~V~p~N 340 (599)
+.++|+..+.++ .+++.+.|..+... +.|+||.++-|.++.
T Consensus 2 ~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~ 45 (241)
T cd06214 2 HPLTVAEVVRET-----ADAVSITFDVPEELRDAFRYRPGQFLTLRVPI 45 (241)
T ss_pred ceEEEEEEEecC-----CCeEEEEEecCcccCCCCCcCCCCeEEEEeec
Confidence 357788888775 36888888876532 589999999999763
No 214
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=30.96 E-value=1.1e+02 Score=30.06 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=32.6
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~-~~l~Y~~GD~l~V~p~N 340 (599)
+.++|++.+.++. +++.+.|+.++ ....|+||.|+-|..++
T Consensus 2 ~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 2 FEATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eeEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 4578888888863 68899998776 35899999999998654
No 215
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=30.80 E-value=1e+02 Score=30.25 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=31.5
Q ss_pred eEEEEEeeeecCCCCCCceEEEEEEecCCC-CccCCCCeEEEeccC
Q 007547 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 340 (599)
Q Consensus 296 ~a~V~~~~~L~~~~~~r~~~hle~di~~~~-l~Y~~GD~l~V~p~N 340 (599)
.++|+++++++ .+++.+.|+.++.. ..|+||+|+-|..++
T Consensus 3 ~~~v~~~~~~~-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQET-----PTVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecC-----CCeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 37788888885 36889999887632 799999999998653
No 216
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=30.62 E-value=2.3e+02 Score=29.19 Aligned_cols=104 Identities=9% Similarity=0.026 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEEeCCCC--CCCchHHHhhhc-cCCe-EEEEeecCCCCCCChhHHHHHHHHhcCCCCC
Q 007547 97 AEGFAKALAEEIKARYEKAAVKVVDLDDY--AMDDEQYEEKLK-KETL-AFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (599)
Q Consensus 97 te~~A~~la~~l~~~~~g~~v~v~dl~d~--~~~~~~~~~~l~-~~~~-vif~~sTyG~G~~p~na~~F~~~L~~~~~~~ 172 (599)
..++|++|++.+.+. |+.+...+-.+. |-.----+.-+. +.+. +|.++-..+ .-.+....+|=+.|.+.-.
T Consensus 86 ~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l~-- 160 (268)
T cd07371 86 DVELAEACVEEGRKA--GLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKATR-- 160 (268)
T ss_pred CHHHHHHHHHHHHHC--CCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHHH--
Confidence 467899999999887 777765433333 221100011122 2333 333332332 2223333333333432100
Q ss_pred CCCCCcEEEEEeecCcchh------------HHHHHHHHHHHHHHHC
Q 007547 173 PWLQQLKFGVFGLGNRQYE------------HFNKIGIVLDEELCKQ 207 (599)
Q Consensus 173 ~~l~~~~~aVFGlGds~Y~------------~f~~~~k~ld~~L~~l 207 (599)
-.+++++|+|.|+.+.. .|...++.+|+++.++
T Consensus 161 --~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 161 --DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred --HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 12488999999988752 2335667777777554
No 217
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=30.21 E-value=1.4e+02 Score=27.40 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=37.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEE--EEeCCCCCCCc--hHHHhhhccCCeEEEEee
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK--VVDLDDYAMDD--EQYEEKLKKETLAFFMVA 147 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~--v~dl~d~~~~~--~~~~~~l~~~~~vif~~s 147 (599)
++|.|.|....-.=.+....|++.|++.+ |++|. .++..+....+ .=+...+.+.+.||++++
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~-g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNC-GIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhcc-CCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 47999999877666788899999998765 44442 12222211111 113333556666666655
No 218
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=29.49 E-value=2.8e+02 Score=29.65 Aligned_cols=88 Identities=8% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC--CCCC--c-hHHHhhhccCCe-EEEEeecCCCCCCC
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD--YAMD--D-EQYEEKLKKETL-AFFMVATYGDGEPT 155 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d--~~~~--~-~~~~~~l~~~~~-vif~~sTyG~G~~p 155 (599)
+=++++|+|.|.+ ....++.+.+.+.+. |.++....+.. +... + ...+.++...+. +|++.+.+
T Consensus 117 ~wk~vailYdsd~--gl~~lq~l~~~~~~~--g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~~------ 186 (370)
T cd06389 117 QWDKFAYLYDSDR--GLSTLQAVLDSAAEK--KWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILDCER------ 186 (370)
T ss_pred CCcEEEEEecCch--HHHHHHHHHHhhccC--CceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEECCH------
Confidence 5689999998764 455677777777766 65544332211 1111 1 224455554432 33333333
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcEEE-EEe
Q 007547 156 DNAARFYKWFTEGNDRGPWLQQLKFG-VFG 184 (599)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~a-VFG 184 (599)
+.+..|++...+.. +....|. ++|
T Consensus 187 ~~~~~il~qa~~~g-----m~~~~y~~il~ 211 (370)
T cd06389 187 DKVNDIVDQVITIG-----KHVKGYHYIIA 211 (370)
T ss_pred HHHHHHHHHHHHhC-----ccccceEEEEc
Confidence 57788888887765 5555555 454
No 219
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=29.24 E-value=4.2e+02 Score=29.00 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=55.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCC-CCchHHHhhhccCCeEEEEeec--CCCCCCChhHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVAT--YGDGEPTDNAA 159 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~-~~~~~~~~~l~~~~~vif~~sT--yG~G~~p~na~ 159 (599)
-.-++|.|||.+|+++...+.+.+ + |.++-++.+.-+- .-.+++..-+.+.+.++++=-+ +|.+. .-..
T Consensus 262 Ae~viV~~GS~~~~~keav~~LR~----~--G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g--~l~~ 333 (394)
T PRK08367 262 AEIIFVTMGSLAGTLKEFVDKLRE----E--GYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGG--AVFA 333 (394)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHh----c--CCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCC--cHHH
Confidence 346899999999999988876654 3 5555555443321 1112243335566777776444 44322 2233
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCcch--hHHHHHHHH
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIV 199 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ 199 (599)
+...-|..... -..+.-.+.|||-+.. +.+-.+.+.
T Consensus 334 dV~aal~~~~~----~~~v~~~~~glgg~~~~~~~~~~~~~~ 371 (394)
T PRK08367 334 DASAALVNESE----KPKILDFIIGLGGRDVTFKQLDEALEI 371 (394)
T ss_pred HHHHHHhccCC----CCeEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 33333322110 1123567889997775 444443333
No 220
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.23 E-value=6.8e+02 Score=26.15 Aligned_cols=118 Identities=8% Similarity=0.046 Sum_probs=75.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc--hHHHhhhccC---CeEEEEeecC--------
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~--~~~~~~l~~~---~~vif~~sTy-------- 149 (599)
..++.++....--.+..|++...+.+.+- |+.++++.+.+...++ ...+.++.++ +.+++-.|=-
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i 108 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQV--GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNV 108 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHH
Confidence 45788888888889999999999998887 8999999887653322 1123333322 3455554422
Q ss_pred -----------------------C--CCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHH
Q 007547 150 -----------------------G--DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (599)
Q Consensus 150 -----------------------G--~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L 204 (599)
| .+-.|-++..-++.|+.... .++|+++.|+|=+ +-+++=+...|
T Consensus 109 ~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i---~l~Gk~vvViGrS-------~~VGkPla~lL 178 (282)
T PRK14180 109 IYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI---KTEGAYAVVVGAS-------NVVGKPVSQLL 178 (282)
T ss_pred HhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHH
Confidence 1 12245566666666665432 3888888888832 33567777777
Q ss_pred HHCCCeEE
Q 007547 205 CKQGGARL 212 (599)
Q Consensus 205 ~~lGa~~i 212 (599)
.+.||+..
T Consensus 179 ~~~~ATVt 186 (282)
T PRK14180 179 LNAKATVT 186 (282)
T ss_pred HHCCCEEE
Confidence 77787653
No 221
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=29.20 E-value=78 Score=36.94 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCe-EEEEeC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA-VKVVDL 122 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~-v~v~dl 122 (599)
.++|+|+++|-.|++..++..|.+.+++. +.+ +++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~--~i~~i~i~~~ 416 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDA--GLSQISVTNS 416 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHc--CCCeeEEEEe
Confidence 57899999999999999999999999876 443 555543
No 222
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=29.04 E-value=2.9e+02 Score=29.70 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=46.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCC-CCchHHHhhhccCCeEEEEeecCCCCCCChhHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~-~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (599)
+-++++|+|.+..|- ..++.+.+.+... |.++....+..++ .+-...+.++...+.-.++...+ ++.+..
T Consensus 123 ~wk~vaiiYd~~~~~--~~lq~l~~~~~~~--g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~-----~~~~~~ 193 (371)
T cd06388 123 EWNRFVFLYDTDRGY--SILQAIMEKAGQN--GWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCE-----IERLQN 193 (371)
T ss_pred CceEEEEEecCCccH--HHHHHHHHhhHhc--CCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECC-----HHHHHH
Confidence 568999999988887 4477787877766 6554433232221 11122555566443323333332 257788
Q ss_pred HHHHHhcCC
Q 007547 161 FYKWFTEGN 169 (599)
Q Consensus 161 F~~~L~~~~ 169 (599)
|++...+..
T Consensus 194 il~qa~~~g 202 (371)
T cd06388 194 ILEQIVSVG 202 (371)
T ss_pred HHHHHHhcC
Confidence 888888754
No 223
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.94 E-value=1.1e+02 Score=27.28 Aligned_cols=96 Identities=17% Similarity=0.024 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc----cCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCC
Q 007547 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK----KETLAFFMVATYGDGEPTDNAARFYKWFTEGNDR 171 (599)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~----~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~ 171 (599)
+..+++.++.+.|.+. |.++..++...-..........+. .-++++++++ |+.....++.+...
T Consensus 11 ~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~-------~~~~~~~v~~~~~~--- 78 (116)
T PF13380_consen 11 NPGKFGYRVLRNLKAA--GYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP-------PDKVPEIVDEAAAL--- 78 (116)
T ss_dssp STTSHHHHHHHHHHHT--T-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S--------HHHHHHHHHHHHHH---
T ss_pred CCCChHHHHHHHHHhC--CCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC-------HHHHHHHHHHHHHc---
Confidence 5566899999999886 766666655442222211112222 3367777664 34666677777652
Q ss_pred CCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecce
Q 007547 172 GPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (599)
Q Consensus 172 ~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (599)
|.+.++|-.| .....+.+.+++.|.+.+.|-+
T Consensus 79 -----g~~~v~~~~g--------~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 79 -----GVKAVWLQPG--------AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp -----T-SEEEE-TT--------S--HHHHHHHHHTT-EEEESS-
T ss_pred -----CCCEEEEEcc--------hHHHHHHHHHHHcCCEEEeCCc
Confidence 5677777666 3346777788889998887754
No 224
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=28.84 E-value=51 Score=30.45 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=34.5
Q ss_pred EEEEEeecCcch---------hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHH
Q 007547 179 KFGVFGLGNRQY---------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 179 ~~aVFGlGds~Y---------~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
+++|+-.||.-+ .-++..+..+.++|++.|++........|+...+.+.+++|
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 63 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKA 63 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 577777777655 23456678899999999998665434445433445555555
No 225
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=28.51 E-value=6.2e+02 Score=25.42 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=74.3
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCCe--EEEEeCCCCCC----CchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 88 VFYGTQTGTAEGFAKALAEEIKARYEKAA--VKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 88 I~YgSqtGtte~~A~~la~~l~~~~~g~~--v~v~dl~d~~~----~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
|+|.-++| +++.+.+.+++ .+. +.++++.+.-. +-++|+.++++.+++|.. +--||.....
T Consensus 2 vi~~G~yG------eR~~~~i~~~~-~~~~~v~~~~~p~~l~efId~pee~Lp~i~~~Dl~I~y------~lHPDl~~~l 68 (217)
T PF02593_consen 2 VIYDGKYG------ERVIENIKNYF-DFCRSVIVYEIPEDLPEFIDDPEEYLPKIPEADLLIAY------GLHPDLTYEL 68 (217)
T ss_pred eeeeCcch------HHHHHHHHhcC-CCCceEEEEeCCccccccccChHHHccCCCCCCEEEEe------ccCchhHHHH
Confidence 56665544 45555555442 455 66666543111 124577778888876642 3356776666
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~ 233 (599)
.+.+.+ .|.++.|.+.++.. -+..+.+.+.+++.|-..++|--.|.-..+-...++++.+
T Consensus 69 ~~~~~e--------~g~kavIvp~~~~~----~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~ 128 (217)
T PF02593_consen 69 PEIAKE--------AGVKAVIVPSESPK----PGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAE 128 (217)
T ss_pred HHHHHH--------cCCCEEEEecCCCc----cchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHH
Confidence 666654 36788888865554 5567899999999998888887666543323344444443
No 226
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=28.11 E-value=4.4e+02 Score=27.81 Aligned_cols=125 Identities=13% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
++++.||+|+. ..++|++|++++.=..+ ++.+...++-.. .-++.+++...+ +.++-|..|. .-++..+.+
T Consensus 1 ~~~i~lf~g~s---hp~La~~I~~~lgi~l~--~v~~kkf~nge~-~v~i~esvR~~d-V~iiqsgsg~--ind~lmELL 71 (316)
T KOG1448|consen 1 MKNIKLFSGDS---HPELAERIAARLGIELG--KVNLKKFSNGET-SVQIGESVRGED-VYIIQSGSGP--INDNLMELL 71 (316)
T ss_pred CCceEEEcCCC---CHHHHHHHHHHhCCCcc--eeeeEEccCCcE-EEecccccccCc-EEEeccCCCc--chHHHHHHH
Confidence 46788998764 57888888888741111 133332222110 001112233333 4455555543 556655555
Q ss_pred HHHhcCCCCCCCCCCcEEEE---EeecCcch---hHHHHHHHHHHHHHHHCCCeEEecceeec
Q 007547 163 KWFTEGNDRGPWLQQLKFGV---FGLGNRQY---EHFNKIGIVLDEELCKQGGARLVPLGLGD 219 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aV---FGlGds~Y---~~f~~~~k~ld~~L~~lGa~~i~~~g~~D 219 (599)
-.+...... ..++--+| |+.+-+.= .|--..+|.+...|...|+..+.-+.+-.
T Consensus 72 I~I~ac~~a---sa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa 131 (316)
T KOG1448|consen 72 IMINACKRA---SASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHA 131 (316)
T ss_pred HHHHhcchh---hhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccc
Confidence 444432211 22222233 66553332 36667899999999999999988765544
No 227
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=28.10 E-value=1.6e+02 Score=25.25 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=41.1
Q ss_pred EEEEEECCCchHHHH--HHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc-----cCCeEEEEeecCCCCC
Q 007547 86 VTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK-----KETLAFFMVATYGDGE 153 (599)
Q Consensus 86 v~I~YgSqtGtte~~--A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~-----~~~~vif~~sTyG~G~ 153 (599)
|.|+|.|++|+.+-. .+++..-|..+ ++..+.+|++.-....+++..... ..-.-||+--.| -|.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k--~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~-iGg 73 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAK--KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEY-CGD 73 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHC--CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEE-eeC
Confidence 789999999987654 46777778777 888888898753222222222222 122567776666 444
No 228
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=28.09 E-value=1.4e+02 Score=31.37 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=38.7
Q ss_pred CCCeEEEEEECCCchH-HHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEE
Q 007547 82 GKTKVTVFYGTQTGTA-EGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFM 145 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtt-e~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~ 145 (599)
+.+.+.|+.||..|.. ..++++|.+.++++ |.+.-++-+++.+.+. +..+.+-+.+|++
T Consensus 208 ~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~--gkk~y~~~~~~i~~~k---L~nf~eid~fV~~ 267 (307)
T PF01866_consen 208 DAKTFGIIVGTLGGQGYLELIKRLKKLLKKA--GKKSYTLSVGEINPAK---LANFPEIDAFVQI 267 (307)
T ss_dssp T--EEEEEEE-STTT--HHHHHHHHHHHHHT--T-EEEEEEESS--GGG---GTTS---SEEEE-
T ss_pred cCCEEEEEEecCCCCCCHHHHHHHHHHHHHc--CCEEEEEEECCCCHHH---HhcCcccCEEEEe
Confidence 5689999999998865 56789999999988 8888888999988876 4445545555554
No 229
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=27.95 E-value=1.3e+02 Score=29.85 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=33.4
Q ss_pred CeeEEEEEeeeecCCCCCCceEEEEEEecCCC-CccCCCCeEEEeccC
Q 007547 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 340 (599)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~-l~Y~~GD~l~V~p~N 340 (599)
++.++|.+.++++. +++.+.|..+... ..|+||.++.|..++
T Consensus 6 ~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 6 DFEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EEeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 46789998888863 6888888876532 599999999998654
No 230
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=27.91 E-value=1.6e+02 Score=29.40 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=32.5
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecCCC--CccCCCCeEEEeccCC
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTG--ITYETGDHVGVYVENC 341 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~~~--l~Y~~GD~l~V~p~N~ 341 (599)
-.++|++.+.++ .++++++|+.++.. +.|+||+++.|+..++
T Consensus 7 ~~~~v~~~~~~s-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAES-----EDITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcC-----CCeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 347888888776 36899999877532 7999999999996554
No 231
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=27.79 E-value=1.1e+02 Score=32.38 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=34.7
Q ss_pred hhHHHHh-cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Q 007547 74 DDEADIA-AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD 124 (599)
Q Consensus 74 ~~~~~~~-~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d 124 (599)
+.++++. +...-|+|+|| -+.++..|+.|++.+.++|+++++.+++=.+
T Consensus 254 ~ll~~l~~~~~elvTi~~G--~~~~~~~a~~l~~~l~~~~p~~eve~~~GgQ 303 (313)
T PF13684_consen 254 KLLEKLLDEDGELVTIYYG--EDVSEEEAEALAEFLEEKYPDVEVEVYDGGQ 303 (313)
T ss_pred HHHHHhhccCCeEEEEEec--CCCCHHHHHHHHHHHHHHhCCeEEEEEECCC
Confidence 3444443 34556999999 3444558999999999999888887775443
No 232
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=27.62 E-value=4.5e+02 Score=24.88 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=16.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhh
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKAR 111 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~ 111 (599)
..+++.++++..........+.+.+.+.+.
T Consensus 123 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 152 (269)
T cd01391 123 GWKRVALIYGDDGAYGRERLEGFKAALKKA 152 (269)
T ss_pred CCceEEEEecCCcchhhHHHHHHHHHHHhc
Confidence 466777777665433444445555555544
No 233
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=27.54 E-value=49 Score=35.19 Aligned_cols=24 Identities=25% Similarity=0.650 Sum_probs=18.7
Q ss_pred CCCCCCCcEEEEeCCCC-hHHHHHH
Q 007547 538 LPANPSVPIIMVGPGTG-LAPFRGF 561 (599)
Q Consensus 538 Lp~~~~~piImIg~GTG-IAPfrsf 561 (599)
+|......++.||+|+| |+|+.+-
T Consensus 110 ~p~~~~~~vLDIGtGag~I~~lLa~ 134 (321)
T PRK11727 110 IPRGANVRVLDIGVGANCIYPLIGV 134 (321)
T ss_pred CCCCCCceEEEecCCccHHHHHHHh
Confidence 45445678999999987 9998764
No 234
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=26.99 E-value=1.2e+02 Score=32.22 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=56.8
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchH-HHhhhccCCeEEEEeecCCCCCCChhHH
Q 007547 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~-~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (599)
++..-.+|.||++...+.+.|+.|+ +. |++++|+|+....+=|.+ +...+.+.+.+|++=--+-.|.+-..
T Consensus 200 ~G~ditiia~G~~v~~al~Aa~~L~----~~--Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~-- 271 (327)
T CHL00144 200 PGNDITILTYSRMRHHVLQAVKVLV----EK--GYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAE-- 271 (327)
T ss_pred cCCCEEEEEccHHHHHHHHHHHHHH----hc--CCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHH--
Confidence 3444566778888888777777764 35 888999999887765543 44556667777776544444543333
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecC
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGd 187 (599)
..+++.+.... .-..++.-+|+-|
T Consensus 272 -va~~l~e~~f~---~~~~pv~rl~~~d 295 (327)
T CHL00144 272 -LIAQINEHLFD---ELDAPIVRLSSQD 295 (327)
T ss_pred -HHHHHHHhchh---hcCCCeEEEccCC
Confidence 44444442100 0124666777654
No 235
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=26.28 E-value=1.3e+02 Score=31.65 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=35.5
Q ss_pred CCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 007547 291 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (599)
Q Consensus 291 ~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~ 341 (599)
.+.|+.++|...+.++. +++.+.|...+ .+.|+||.|+-|..++.
T Consensus 6 ~~~~~~~~V~~i~~~t~-----~v~~l~l~~~~-~~~f~pGQfv~l~~~~~ 50 (332)
T PRK10684 6 PQCPNRMQVHSIVQETP-----DVWTISLICHD-FYPYRAGQYALVSIRNS 50 (332)
T ss_pred CCCceeEEEEEEEccCC-----CeEEEEEcCCC-CCCcCCCCEEEEEecCC
Confidence 45678899998888873 68888887554 68999999999986654
No 236
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=25.95 E-value=89 Score=26.84 Aligned_cols=86 Identities=10% Similarity=0.144 Sum_probs=50.0
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~ 164 (599)
+|+++.|+--+|+ -+|+++.+.+.++ |..+++... +..+ +.....+++ +|+.+|-. +..++.
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~--~~~~~v~~~---~~~~--~~~~~~~~D-iil~~Pqv---------~~~~~~ 62 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKR--GIDAEIEAV---PESE--LEEYIDDAD-VVLLGPQV---------RYMLDE 62 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHC--CCceEEEEe---cHHH--HHHhcCCCC-EEEEChhH---------HHHHHH
Confidence 4889999998888 6899999999988 776544322 2211 111234555 55555544 334445
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCcchhHHH
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFN 194 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~ 194 (599)
+++... ..+.++.+.. ...|.+.+
T Consensus 63 i~~~~~----~~~~pv~~I~--~~~Y~~~d 86 (96)
T cd05564 63 VKKKAA----EYGIPVAVID--MMDYGMMN 86 (96)
T ss_pred HHHHhc----cCCCcEEEcC--hHhcccCC
Confidence 553211 2456777765 33566544
No 237
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=25.95 E-value=2.6e+02 Score=27.56 Aligned_cols=73 Identities=25% Similarity=0.314 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCC
Q 007547 93 QTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (599)
Q Consensus 93 qtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~ 172 (599)
+.||.-..|-.++..+-+. +...++.+. ...++.++|... +|+|+|.++.=........
T Consensus 76 ~GgT~lGaAl~~a~d~Ie~---------~~~~~~a~~------kgdyrP~vfLiT---DG~PtD~w~~~~~~~~~~~--- 134 (207)
T COG4245 76 QGGTPLGAALTLALDMIEE---------RKRKYDANG------KGDYRPWVFLIT---DGEPTDDWQAGAALVFQGE--- 134 (207)
T ss_pred CCCCchHHHHHHHHHHHHH---------HHhhcccCC------ccccceEEEEec---CCCcchHHHhHHHHhhhcc---
Confidence 3677777666666555433 123344444 456788888764 8999998875322222222
Q ss_pred CCCCCcEEEEEeecCc
Q 007547 173 PWLQQLKFGVFGLGNR 188 (599)
Q Consensus 173 ~~l~~~~~aVFGlGds 188 (599)
=+.++++.|++|-+
T Consensus 135 --~~~k~v~a~~~G~~ 148 (207)
T COG4245 135 --RRAKSVAAFSVGVQ 148 (207)
T ss_pred --cccceEEEEEeccc
Confidence 24578888888744
No 238
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=25.62 E-value=3e+02 Score=32.27 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=49.8
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccC-CeEEEEeecCCCCCCChhHH
Q 007547 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~-~~vif~~sTyG~G~~p~na~ 159 (599)
++..=.+|.||++...|.+.|+.|++ . |+.++|+|+.-..+-|.+.+.++.+. +.+|.+=... .|.. +.
T Consensus 543 eG~dvtIva~G~~v~~Al~AA~~L~~----~--GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~-~GG~---Gs 612 (641)
T PLN02234 543 DGERVALLGYGSAVQRCLEAASMLSE----R--GLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGS-IGGF---GS 612 (641)
T ss_pred eCCCEEEEEecHHHHHHHHHHHHHHh----c--CCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCC-CCcH---HH
Confidence 34455677899988888888877644 4 78899999987766665556666654 4554443332 2432 33
Q ss_pred HHHHHHhcCC
Q 007547 160 RFYKWFTEGN 169 (599)
Q Consensus 160 ~F~~~L~~~~ 169 (599)
...++|.+..
T Consensus 613 ~Va~~l~e~~ 622 (641)
T PLN02234 613 HVVQFLALDG 622 (641)
T ss_pred HHHHHHHHcC
Confidence 4566665543
No 239
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=25.19 E-value=1.5e+02 Score=29.18 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=31.0
Q ss_pred eEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 007547 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (599)
Q Consensus 296 ~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N 340 (599)
.|+|++.+.++ .+++.+.|..+. .+.|+||+|+.|..+.
T Consensus 2 ~~~v~~~~~~t-----~~~~~~~l~~~~-~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 2 RGTIVAQERLT-----HDIVRLTVQLDR-PIAYKAGQYAELTLPG 40 (227)
T ss_pred eEEEEEEeecC-----CCEEEEEEecCC-CCCcCCCCEEEEEeCC
Confidence 47888888886 368888887653 6799999999999754
No 240
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.12 E-value=3e+02 Score=26.50 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=21.1
Q ss_pred hcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE
Q 007547 80 AAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (599)
Q Consensus 80 ~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~ 120 (599)
...+.++.++ |.++..++++++.++++|+++++.-.
T Consensus 45 ~~~~~~vfll-----G~~~~v~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 45 GKEKLPIFLY-----GGKPDVLQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred HHcCCeEEEE-----CCCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3344455544 55555666666666667887765433
No 241
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=25.11 E-value=2.7e+02 Score=30.81 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=40.4
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCC
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYG 150 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG 150 (599)
+|+|-|++-. +++.+++.++..|.+. |++ |+++.....--..+...-.+...-|.++++++
T Consensus 44 ~VvVg~D~R~-ss~~l~~a~~~gL~s~--G~~--V~~~g~~pTP~~~~a~~~~~~~gGi~ITaSHn 104 (448)
T PRK14315 44 RVVIGKDTRL-SGYMIENALVAGFTSV--GMD--VLLLGPIPTPAVAMLTRSMRADLGVMISASHN 104 (448)
T ss_pred eEEEEeCCCC-CHHHHHHHHHHHHHHC--CCe--EEEeCCcccHHHHHHHHhcCCCEEEEEEcCCC
Confidence 6999999987 8999999999999987 655 56654332211112111123456788888873
No 242
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=25.06 E-value=1.7e+02 Score=25.60 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=26.8
Q ss_pred CeEEEEEECCCchHHHH--HHHHHHHHHhhhCCCeEEEEeCCC
Q 007547 84 TKVTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVVDLDD 124 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~--A~~la~~l~~~~~g~~v~v~dl~d 124 (599)
|.|.|++.|.||+.+-- -+++..-|.+. ++..+.+|+..
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~--kI~fe~vDIa~ 41 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAK--KIPFEEVDIAM 41 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHT--T--EEEEETTT
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHc--CCCcEEEeCcC
Confidence 45889999999997543 45677777777 78888999987
No 243
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=25.03 E-value=2.3e+02 Score=33.10 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=39.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEE
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFM 145 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~ 145 (599)
+..-++|.||++...|.+.|+.|+ +. |+.++|+|+....+=|.+++.++.+...++++
T Consensus 504 G~ditIva~G~~v~~aleAa~~L~----~~--Gi~v~VId~~~lkPlD~~~i~sv~k~~~vvvv 561 (641)
T PRK12571 504 GPDVAILSVGAHLHECLDAADLLE----AE--GISVTVADPRFVKPLDEALTDLLVRHHIVVIV 561 (641)
T ss_pred CCCEEEEEecHHHHHHHHHHHHHH----hc--CCCEEEEEcCcCCCcCHHHHHHHhhhCCEEEE
Confidence 445567778888877777776653 45 78899999977666665666666655444443
No 244
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=24.94 E-value=1.2e+02 Score=32.80 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=31.6
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhC-CCeEEEEeCC
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYE-KAAVKVVDLD 123 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~-g~~v~v~dl~ 123 (599)
.+++|+|+.+|..|-=...|+.|++.+.++.+ +..+.++|+=
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~ 46 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLF 46 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehH
Confidence 46799999999876778889999999987622 2456656553
No 245
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=24.53 E-value=1.3e+02 Score=29.54 Aligned_cols=38 Identities=8% Similarity=0.244 Sum_probs=29.9
Q ss_pred EEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 007547 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (599)
Q Consensus 298 ~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~ 341 (599)
+|+..+.++ .++++++|..++ .+.|+||.++.|...+.
T Consensus 2 ~v~~~~~~t-----~~~~~l~l~~~~-~~~~~pGQ~v~l~~~~~ 39 (224)
T cd06189 2 KVESIEPLN-----DDVYRVRLKPPA-PLDFLAGQYLDLLLDDG 39 (224)
T ss_pred EEEEEEeCC-----CceEEEEEecCC-CcccCCCCEEEEEcCCC
Confidence 566666665 368999998775 78999999999997653
No 246
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=24.21 E-value=1.7e+02 Score=31.91 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=40.7
Q ss_pred hccCCeEEEEeecCCCCCCChhHHHHHHHHhcCC-CCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 136 LKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN-DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 136 l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~-~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
+.+..+.+.-+|.+ +. ..-++..+-.+.... ..+..+.+++++|+|+| .+++.+.++|+.+|.+.++
T Consensus 77 ~~~~gI~v~napg~-na--~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G--------~IG~~va~~l~a~G~~V~~ 144 (381)
T PRK00257 77 FAEAGITWSSAPGC-NA--RGVVDYVLGSLLTLAEREGVDLAERTYGVVGAG--------HVGGRLVRVLRGLGWKVLV 144 (381)
T ss_pred HHHCCCEEEECCCc-Ch--HHHHHHHHHHHHHHhcccCCCcCcCEEEEECCC--------HHHHHHHHHHHHCCCEEEE
Confidence 45555555444444 22 233333333332211 12345899999999977 3688999999999998753
No 247
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=23.95 E-value=1.5e+02 Score=29.39 Aligned_cols=41 Identities=22% Similarity=0.162 Sum_probs=31.9
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N 340 (599)
+.++|+...+++ .++++++|+.++....|+||.++-|..++
T Consensus 18 ~~~~v~~i~~~~-----~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~ 58 (243)
T cd06216 18 LRARVVAVRPET-----ADMVTLTLRPNRGWPGHRAGQHVRLGVEI 58 (243)
T ss_pred eEEEEEEEEEcC-----CCcEEEEEecCCCCCCcCCCceEEEEEEE
Confidence 357888888775 36889999876544689999999998653
No 248
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=23.88 E-value=54 Score=30.09 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=36.0
Q ss_pred EEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHH
Q 007547 181 GVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (599)
Q Consensus 181 aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~ 233 (599)
||+-.||.-+ .-++..+..+.+.|++.|++........|+...+.+.+..|.+
T Consensus 1 aIi~~GdEl~~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~ 55 (144)
T PF00994_consen 1 AIISTGDELLSGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALD 55 (144)
T ss_dssp EEEEECHHHHTTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEECccCcCCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhc
Confidence 5667777776 3467788999999999999776554555554455555555543
No 249
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=23.85 E-value=1.9e+02 Score=31.08 Aligned_cols=78 Identities=23% Similarity=0.180 Sum_probs=49.5
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchH-HHhhhccCCeEEEEeecCCCCCCChhHH
Q 007547 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~-~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (599)
++..-++|-|||+++.+.+.|+.|.+ . |+++.++|+..+.+=+.+ +...+.+.+.+|++==.+=.|.+- .
T Consensus 232 ~G~di~Iia~Gs~~~~aleAa~~L~~----~--Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG---~ 302 (355)
T PTZ00182 232 EGKDVTIVGYGSQVHVALKAAEELAK----E--GISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIG---A 302 (355)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHHh----C--CCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHH---H
Confidence 44555678899999988888877643 4 788888888776654433 455566777777764444344432 2
Q ss_pred HHHHHHhc
Q 007547 160 RFYKWFTE 167 (599)
Q Consensus 160 ~F~~~L~~ 167 (599)
.+.+++.+
T Consensus 303 ~Va~~l~e 310 (355)
T PTZ00182 303 EIAAQIME 310 (355)
T ss_pred HHHHHHHH
Confidence 34444444
No 250
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=23.75 E-value=1.1e+02 Score=27.59 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=30.1
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCC
Q 007547 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA 126 (599)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~ 126 (599)
++..|....|-+|.++..++++|.++ |.++.++....-+
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~--G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKR--GHEVTVVSPGVKD 41 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHT--T-EEEEEESS-TT
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence 45567788999999999999999998 8999888555433
No 251
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=23.57 E-value=5.3e+02 Score=30.44 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccC-CeEEEEeecCCCCCCChhHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~-~~vif~~sTyG~G~~p~na~~ 160 (599)
...-.+|.||++...|.+.|+.|+ +. |+.++|+|+.-..+=|.+++.++.+. +.+|.+=..+- |.. ...
T Consensus 543 G~dvtIva~G~~v~~Al~Aa~~L~----~~--GI~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~---Gs~ 612 (677)
T PLN02582 543 GERVALLGYGTAVQSCLAAASLLE----RH--GLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGF---GSH 612 (677)
T ss_pred CCCEEEEeecHHHHHHHHHHHHHH----hc--CCCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcH---HHH
Confidence 344457778888888777776664 45 78899999988876665666666554 45554433332 432 233
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecC
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGd 187 (599)
..+++.+.... ....++--+|+-|
T Consensus 613 va~~l~~~~~~---~~~~~v~~~Gi~d 636 (677)
T PLN02582 613 VAQFMALDGLL---DGKLKWRPLVLPD 636 (677)
T ss_pred HHHHHHhcCCc---cCCceeEEecCCC
Confidence 45555543200 1124566666533
No 252
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=23.39 E-value=1.9e+02 Score=32.48 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=56.5
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchH-HHhhhccCCeEEEEeecCCCCCCChhHH
Q 007547 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~-~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (599)
++..=.+|.||++...+.+.|+.|+ +. |+.++|+|+....+=|.+ ++..+.+.+.+|.+=--+-.|.+-.
T Consensus 339 ~G~DvtIva~G~~v~~Al~Aa~~L~----~~--GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~--- 409 (464)
T PRK11892 339 EGKDVTIVSFSIGMTYALKAAEELA----KE--GIDAEVIDLRTIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGA--- 409 (464)
T ss_pred cCCCEEEEEccHHHHHHHHHHHHHH----hc--CCCEEEEECCCCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHH---
Confidence 3444567778888888777777664 35 788999999877655533 6666777777777654444444322
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecC
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGd 187 (599)
.....|.+...+ .+ ..++.-+|.-|
T Consensus 410 ~va~~l~e~~f~--~l-~~pv~ri~~~d 434 (464)
T PRK11892 410 EIAARVMEQAFD--YL-DAPVLRVTGKD 434 (464)
T ss_pred HHHHHHHHhCcc--cc-CCCeEEeccCC
Confidence 344444442210 11 23566666544
No 253
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.38 E-value=4.3e+02 Score=27.58 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=44.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEE---EEeCCCCCCCchHHHhhhccCCe-EEEEeecCCCCCCChhH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK---VVDLDDYAMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNA 158 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~---v~dl~d~~~~~~~~~~~l~~~~~-vif~~sTyG~G~~p~na 158 (599)
.++|.|+|.. +.-.+..++.+.+.+.+. |.++- .++....|... .+.++.+.+. +|++.... .++
T Consensus 138 ~~~v~ii~~~-~~~g~~~~~~~~~~~~~~--G~~v~~~~~~~~~~~d~s~--~i~~i~~~~~d~v~~~~~~------~~~ 206 (347)
T cd06335 138 FKKVALLLDN-TGWGRSNRKDLTAALAAR--GLKPVAVEWFNWGDKDMTA--QLLRAKAAGADAIIIVGNG------PEG 206 (347)
T ss_pred CCeEEEEecc-CchhhhHHHHHHHHHHHc--CCeeEEEeeecCCCccHHH--HHHHHHhCCCCEEEEEecC------hHH
Confidence 5789999865 445567788888888876 65532 22333333332 5556654432 33333322 355
Q ss_pred HHHHHHHhcCC
Q 007547 159 ARFYKWFTEGN 169 (599)
Q Consensus 159 ~~F~~~L~~~~ 169 (599)
..|++.+....
T Consensus 207 ~~~~~~~~~~g 217 (347)
T cd06335 207 AQIANGMAKLG 217 (347)
T ss_pred HHHHHHHHHcC
Confidence 66888888754
No 254
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.30 E-value=2e+02 Score=31.00 Aligned_cols=60 Identities=20% Similarity=0.057 Sum_probs=40.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchH-HHhhhccCCeEEEEeec
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVAT 148 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~-~~~~l~~~~~vif~~sT 148 (599)
..-++|.|||+++++++.++.+.+ + |+++.++++..+.+=+.+ +...+.+.+.++++=-+
T Consensus 247 ad~~iva~Gs~~~~a~eA~~~L~~----~--Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n 307 (352)
T PRK07119 247 AELVLVAYGTSARIAKSAVDMARE----E--GIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS 307 (352)
T ss_pred CCEEEEEcCccHHHHHHHHHHHHH----c--CCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC
Confidence 345788899999998888877643 5 777888887655443322 44445667766666444
No 255
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=23.19 E-value=6.8e+02 Score=24.12 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=21.6
Q ss_pred EEEEEEC-CCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Q 007547 86 VTVFYGT-QTGTAEGFAKALAEEIKARYEKAAVKVVDLDD 124 (599)
Q Consensus 86 v~I~YgS-qtGtte~~A~~la~~l~~~~~g~~v~v~dl~d 124 (599)
|.+++.. ....-..+.+.+.+.+.++ |.++.+++.+.
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~--g~~~~~~~~~~ 39 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKEL--GVELIVLDAQN 39 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhc--CceEEEECCCC
Confidence 4455532 2344455666666667666 67777776654
No 256
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=23.04 E-value=6e+02 Score=27.07 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=48.2
Q ss_pred CCCeEEEEEECCCch---HHHHHHHHHHHHHhhhCCCeEEEEeCCCCC--CCchHHHhhhccCCeEEEEeecCCCCCCCh
Q 007547 82 GKTKVTVFYGTQTGT---AEGFAKALAEEIKARYEKAAVKVVDLDDYA--MDDEQYEEKLKKETLAFFMVATYGDGEPTD 156 (599)
Q Consensus 82 ~~~~v~I~YgSqtGt---te~~A~~la~~l~~~~~g~~v~v~dl~d~~--~~~~~~~~~l~~~~~vif~~sTyG~G~~p~ 156 (599)
+-+++.|+|....+. ....++.+.+.+++. |..+....+...+ .+-...+.++....-+|++.... +
T Consensus 141 ~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~vii~~~~~------~ 212 (396)
T cd06373 141 NWSRAALLYHDDKNDDRPCYFTLEGVYTVLKEE--NITVSDFPFDEDKELDDYKELLRDISKKGRVVIMCASP------D 212 (396)
T ss_pred CCeEEEEEEECCCCCcchHHHHHHHHHHHHhhc--CceeeEEeecCCccccCHHHHHHHHHhcCcEEEEecCH------H
Confidence 457899999865432 344566677777655 5554333222211 11123555565444344443322 4
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEe
Q 007547 157 NAARFYKWFTEGNDRGPWLQQLKFGVFG 184 (599)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~aVFG 184 (599)
.+..|++.+.+.. +....|..+.
T Consensus 213 ~~~~~~~qa~~~g-----~~~~~yv~i~ 235 (396)
T cd06373 213 TVREIMLAAHRLG-----LTSGEYVFFN 235 (396)
T ss_pred HHHHHHHHHHHcC-----CCCCcEEEEE
Confidence 6677888777654 4445565554
No 257
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=23.04 E-value=55 Score=33.49 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.7
Q ss_pred CCcEEEEeCCCChHHHHHH
Q 007547 543 SVPIIMVGPGTGLAPFRGF 561 (599)
Q Consensus 543 ~~piImIg~GTGIAPfrsf 561 (599)
...|+.||+|+|+.|+.--
T Consensus 45 ~~~IlDlGaG~G~l~L~la 63 (248)
T COG4123 45 KGRILDLGAGNGALGLLLA 63 (248)
T ss_pred CCeEEEecCCcCHHHHHHh
Confidence 7899999999999998644
No 258
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=22.79 E-value=1.3e+02 Score=31.91 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=30.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCe-EEEEeC
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA-VKVVDL 122 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~-v~v~dl 122 (599)
.+++|+|+++|-.|--...|+.|+++|.++ |.. +.+.|.
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~--g~~~~~~~d~ 42 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQK--GIKDVIVCDL 42 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhc--CCCcEEEEEh
Confidence 467899999998768888999999999877 554 333344
No 259
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.60 E-value=9.1e+02 Score=25.37 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=80.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHH---HhhhccC---CeEEEEeecC-------
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQY---EEKLKKE---TLAFFMVATY------- 149 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~---~~~l~~~---~~vif~~sTy------- 149 (599)
..++.|+....--.+..|++...+.+.+- |+.++++.+.+-..+ +++ +.+|.++ +.+++-.|=-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~e-~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~ 108 (294)
T PRK14187 32 FPCLIVILVGDDPASQLYVRNKQRKAEML--GLRSETILLPSTISE-SSLIEKINELNNDDSVHGILVQLPVPNHIDKNL 108 (294)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCH-HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence 35688888888889999999999999887 899999988654322 223 3334333 3566665511
Q ss_pred ------------------------CC---CCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHH
Q 007547 150 ------------------------GD---GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDE 202 (599)
Q Consensus 150 ------------------------G~---G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~ 202 (599)
|+ +-.|-++..-++.|+.... .++|+++.|+|=+ +-+++=+..
T Consensus 109 i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvViGrS-------~iVGkPla~ 178 (294)
T PRK14187 109 IINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITR---NLSGSDAVVIGRS-------NIVGKPMAC 178 (294)
T ss_pred HHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHH
Confidence 21 2356677777777776443 3999999999832 446788888
Q ss_pred HHHHCCCeEE
Q 007547 203 ELCKQGGARL 212 (599)
Q Consensus 203 ~L~~lGa~~i 212 (599)
.|.+.||+..
T Consensus 179 lL~~~~aTVt 188 (294)
T PRK14187 179 LLLGENCTVT 188 (294)
T ss_pred HHhhCCCEEE
Confidence 8888888764
No 260
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=22.44 E-value=2.7e+02 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=26.0
Q ss_pred CCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
+.|++++|+|.|. .++.+-..++.+|++.++
T Consensus 193 l~Gk~VvViG~G~--------IG~~vA~~ak~~Ga~ViV 223 (406)
T TIGR00936 193 IAGKTVVVAGYGW--------CGKGIAMRARGMGARVIV 223 (406)
T ss_pred CCcCEEEEECCCH--------HHHHHHHHHhhCcCEEEE
Confidence 7899999999653 688899999999997554
No 261
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.43 E-value=1.1e+02 Score=25.57 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=30.1
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCcEEEEEee-cC---cchhHHHHHHHHHHHHHHHCCCe
Q 007547 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GN---RQYEHFNKIGIVLDEELCKQGGA 210 (599)
Q Consensus 154 ~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gd---s~Y~~f~~~~k~ld~~L~~lGa~ 210 (599)
-|+.+...++.++... -.++.++|||. +| +.++.. ..+.+.+.+..-.
T Consensus 23 Np~s~~a~l~~l~~~~-----~~~~~i~V~G~~~d~g~~~~~~~----~~~~~~~~~~~d~ 74 (91)
T PF02875_consen 23 NPDSIRALLEALKELY-----PKGRIIAVFGAMGDLGSKDKDFH----EEIGELAAQLADV 74 (91)
T ss_dssp SHHHHHHHHHHHHHHC-----TTSEEEEEEEEBTT-HTSHHHCH----HHHHHHHTTCSSE
T ss_pred CHHHHHHHHHHHHHhc-----cCCcEEEEEccccccccccHHHH----HHHHHHHHhcCCE
Confidence 3677888899988753 35789999994 44 444322 3444455455544
No 262
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=22.09 E-value=1.2e+02 Score=31.98 Aligned_cols=18 Identities=44% Similarity=0.951 Sum_probs=14.7
Q ss_pred CCCCCCcEEEEeCCCChH
Q 007547 539 PANPSVPIIMVGPGTGLA 556 (599)
Q Consensus 539 p~~~~~piImIg~GTGIA 556 (599)
+..+..|+..||||||+-
T Consensus 127 ~~~~~a~~avlGPGTGLG 144 (320)
T COG0837 127 KPEPNAPRAVLGPGTGLG 144 (320)
T ss_pred CCCCCCceEEEcCCCCcc
Confidence 345679999999999973
No 263
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=21.88 E-value=1.8e+02 Score=30.66 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=33.5
Q ss_pred CeeEEEEEeeeecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 007547 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (599)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hle~di~~-~~l~Y~~GD~l~V~p~N 340 (599)
.+.++|++.+.++ .++++++|+.++ ..+.|+||.++.|..++
T Consensus 102 ~~~~~V~~~~~~~-----~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 102 KLPCRVASLERVA-----GDVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred EEEEEEEEEEcCC-----CcEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 3568888888775 368899998864 35799999999999765
No 264
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=21.74 E-value=68 Score=29.07 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=30.6
Q ss_pred EEeecCcchh---HHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHH
Q 007547 182 VFGLGNRQYE---HFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (599)
Q Consensus 182 VFGlGds~Y~---~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~ 232 (599)
|+-.||.-.. -++..+..+.++|++.|++........|+...+.+.+.+|.
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~ 55 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREAL 55 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH
Confidence 4445554431 14566788999999999986654444454334455555553
No 265
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=21.74 E-value=1.5e+02 Score=28.16 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 173 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 173 ~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
..+.+++++|+|+| ..++.+-++|+.+|++.++
T Consensus 32 ~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 32 RELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp S-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEEE
T ss_pred cccCCCEEEEEEEc--------CCcCeEeeeeecCCceeEE
Confidence 45999999999965 5789999999999997664
No 266
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=21.70 E-value=2.2e+02 Score=29.35 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHhhhCCCeEEEEeCCCCC
Q 007547 83 KTKVTVFYGTQTGTAE---GFAKALAEEIKARYEKAAVKVVDLDDYA 126 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte---~~A~~la~~l~~~~~g~~v~v~dl~d~~ 126 (599)
+++|.|++|+.+=.=+ .-+..|.+.|+++ |+++.+++.++..
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~--g~~v~~i~~~~~~ 48 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREA--GYDAHPIDPGEDI 48 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHC--CCEEEEEecCcch
Confidence 4579999977543222 2568888889888 8999988776543
No 267
>PRK05629 hypothetical protein; Validated
Probab=21.68 E-value=9.2e+02 Score=25.08 Aligned_cols=130 Identities=10% Similarity=0.093 Sum_probs=74.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhh-hCCCeEEEEeCCCCCCCchHHHhh----hccCCeEEEEeecCCCCCCChhH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYAMDDEQYEEK----LKKETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~-~~g~~v~v~dl~d~~~~~~~~~~~----l~~~~~vif~~sTyG~G~~p~na 158 (599)
..++++||...+-.++..+.|.+.+... +..+++..+|.++++.++ +.+. ++..+-+|++--..+.|. ...
T Consensus 6 ~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~~~~--l~~~~t~slF~~~rlV~v~~~~~~~~--~~~ 81 (318)
T PRK05629 6 PPVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVSQGE--LLDALSPSLFGEDRVIVLTNMEQAGK--EPT 81 (318)
T ss_pred CceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCCHHH--HHHhhCcCccCCceEEEEeChHhcCh--hHH
Confidence 5799999999999998888888877543 224567777888777654 3321 233344444443332222 345
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEE-eecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHH
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVF-GLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWP 237 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVF-GlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~ 237 (599)
..+.+++.... .. .+-|| .-|. ...+++-+.|++.|... +.- .....++..|..+...
T Consensus 82 ~~l~~~l~~~~------~~-~~Lil~~~~~-------~~~kk~~K~l~k~~~~v--e~~-----~~~~~~l~~wi~~~~~ 140 (318)
T PRK05629 82 DLALSAAVDPS------PG-IYLIIMHSGG-------GRTKSMVPKLEKIAVVH--EAA-----KLKPRERPGWVTQEFK 140 (318)
T ss_pred HHHHHHHhCCC------CC-eEEEEEcCCc-------chhhHHHHHHHhcceEe--eCC-----CCCHHHHHHHHHHHHH
Confidence 56778877632 22 33333 3221 12355556677766432 211 2346888899876544
Q ss_pred H
Q 007547 238 E 238 (599)
Q Consensus 238 ~ 238 (599)
.
T Consensus 141 ~ 141 (318)
T PRK05629 141 N 141 (318)
T ss_pred H
Confidence 4
No 268
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=21.56 E-value=2.4e+02 Score=27.39 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=61.7
Q ss_pred eEEEEEEC---CCchH----HHHHHHHHHHHHhhhCCCeEEEEeCC-----CCCCCchHHHhhhccCCeEEE-EeecCCC
Q 007547 85 KVTVFYGT---QTGTA----EGFAKALAEEIKARYEKAAVKVVDLD-----DYAMDDEQYEEKLKKETLAFF-MVATYGD 151 (599)
Q Consensus 85 ~v~I~YgS---qtGtt----e~~A~~la~~l~~~~~g~~v~v~dl~-----d~~~~~~~~~~~l~~~~~vif-~~sTyG~ 151 (599)
|-.|+||| |.+.| ..+...+++.+. ..++++- ..+++-..++.++.. +++++ +.+....
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l~-------~~~iNLGfsG~~~le~~~a~~ia~~~a-~~~~ld~~~N~~~ 73 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAILARRLG-------LDVINLGFSGNGKLEPEVADLIAEIDA-DLIVLDCGPNMSP 73 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHHHHHHT--------EEEEEE-TCCCS--HHHHHHHHHS---SEEEEEESHHCCT
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHHHHHcC-------CCeEeeeecCccccCHHHHHHHhcCCC-CEEEEEeecCCCH
Confidence 45788886 33333 245555666552 4456552 222222235555544 55544 5666656
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEe---ecC--------cchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFG---LGN--------RQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFG---lGd--------s~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
-+....+..|++.+.+... ...+.+.- ..+ ..+..++++.+..-+.|++.|-+.++
T Consensus 74 ~~~~~~~~~fv~~iR~~hP------~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~ 140 (178)
T PF14606_consen 74 EEFRERLDGFVKTIREAHP------DTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLY 140 (178)
T ss_dssp TTHHHHHHHHHHHHHTT-S------SS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEE
T ss_pred HHHHHHHHHHHHHHHHhCC------CCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 6677888899999988653 23444333 111 12467888888888888887877665
No 269
>PRK08051 fre FMN reductase; Validated
Probab=21.52 E-value=1.9e+02 Score=28.61 Aligned_cols=39 Identities=8% Similarity=0.156 Sum_probs=30.9
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEecc
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 339 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~ 339 (599)
+.++|.+.+.++ .+++++.|..++ .+.|+||.++-|...
T Consensus 3 ~~~~v~~i~~~~-----~~~~~l~l~~~~-~~~~~pGQ~v~l~~~ 41 (232)
T PRK08051 3 LSCKVTSVEAIT-----DTVYRVRLVPEA-PFSFRAGQYLMVVMG 41 (232)
T ss_pred eEEEEEEEecCC-----CCeEEEEEecCC-CCccCCCCEEEEEcC
Confidence 467888888775 368899998654 689999999999853
No 270
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=21.49 E-value=6.9e+02 Score=25.50 Aligned_cols=139 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCC---------
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDG--------- 152 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G--------- 152 (599)
...+|-+++----++.+...+...+.+... ++.+-+-.+..-.... +...+.+.++.+|.+++....
T Consensus 39 ~G~~i~l~~~D~~~~~~~a~~~~~~l~~~~--~v~~vvg~~~s~~~~~--~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~ 114 (343)
T PF13458_consen 39 NGRKIELVVYDDGGDPAQAVQAARKLIDDD--GVDAVVGPLSSAQAEA--VAPIAEEAGIPYISPSASSPSPDSPNVFRL 114 (343)
T ss_dssp TTEEEEEEEEE-TT-HHHHHHHHHHHHHTS--TESEEEESSSHHHHHH--HHHHHHHHT-EEEESSGGGGTTTHTTEEES
T ss_pred CCccceeeeccCCCChHHHHHHHHHhhhhc--CcEEEEecCCcHHHHH--HHHHHHhcCcEEEEeeccCCCCCCCcEEEE
Q ss_pred --CCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHH
Q 007547 153 --EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTA 230 (599)
Q Consensus 153 --~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~ 230 (599)
.....+..+.+++... ...++++++.. .+.+.......+.+.+++.|.+.+......-+..+....+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~------~g~~~v~iv~~---~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~ 185 (343)
T PF13458_consen 115 SPSDSQQAAALAEYLAKK------LGAKKVAIVYP---DDPYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQ 185 (343)
T ss_dssp S--HHHHHHHHHHHHHHT------TTTSEEEEEEE---SSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHH
T ss_pred eccccHHHHHHHHHHHHH------cCCcEEEEEec---CchhhhHHHHHHHHHHhhcCceeccceecccccccchHHHHH
Q ss_pred HHH
Q 007547 231 WRE 233 (599)
Q Consensus 231 W~~ 233 (599)
.++
T Consensus 186 l~~ 188 (343)
T PF13458_consen 186 LKS 188 (343)
T ss_dssp HHH
T ss_pred Hhh
No 271
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.47 E-value=9.4e+02 Score=25.11 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=79.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhh---hccC---CeEEEEeec--------
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK---LKKE---TLAFFMVAT-------- 148 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~---l~~~---~~vif~~sT-------- 148 (599)
..++.|+....--.+..|++...+.+.+- |+.++++.+.+--. +++++.. +..+ +.+++-.|-
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~t-~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~ 106 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEV--GITSVEHHLPATTT-QAELLALIARLNADPAVHGILVQLPLPKHVDERA 106 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCC-HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence 45688888888889999999999989887 89999998854322 2223333 3322 466666552
Q ss_pred ----------------C-------CC-C-CCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHH
Q 007547 149 ----------------Y-------GD-G-EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEE 203 (599)
Q Consensus 149 ----------------y-------G~-G-~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~ 203 (599)
+ |+ + -.|-++...++.|+...- .++|+++.|+|=+ +-.++=+...
T Consensus 107 i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~~i---~l~Gk~vvViGrS-------~iVGkPla~l 176 (282)
T PRK14182 107 VLDAISPAKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEARV---DPKGKRALVVGRS-------NIVGKPMAMM 176 (282)
T ss_pred HHhccCcccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHH
Confidence 1 11 1 246677777788776543 3899999999833 3467888888
Q ss_pred HHHCCCeEE
Q 007547 204 LCKQGGARL 212 (599)
Q Consensus 204 L~~lGa~~i 212 (599)
|.+.||+..
T Consensus 177 L~~~~AtVt 185 (282)
T PRK14182 177 LLERHATVT 185 (282)
T ss_pred HHHCCCEEE
Confidence 888888654
No 272
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=21.46 E-value=22 Score=21.02 Aligned_cols=10 Identities=50% Similarity=1.128 Sum_probs=7.5
Q ss_pred CChHHHHHHH
Q 007547 553 TGLAPFRGFL 562 (599)
Q Consensus 553 TGIAPfrsfl 562 (599)
+|++||||=.
T Consensus 6 ~gftpfrgkf 15 (19)
T PF06753_consen 6 PGFTPFRGKF 15 (19)
T ss_pred CCCCcccccc
Confidence 5888998743
No 273
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=21.45 E-value=4.5e+02 Score=28.17 Aligned_cols=91 Identities=13% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCCeEE-EEEECCCchHH---HHHHHHHHHHHhhhCCCeEEEEeCCCCCC-CchHHHhhhccCCeEEEEeecCCCCCCCh
Q 007547 82 GKTKVT-VFYGTQTGTAE---GFAKALAEEIKARYEKAAVKVVDLDDYAM-DDEQYEEKLKKETLAFFMVATYGDGEPTD 156 (599)
Q Consensus 82 ~~~~v~-I~YgSqtGtte---~~A~~la~~l~~~~~g~~v~v~dl~d~~~-~~~~~~~~l~~~~~vif~~sTyG~G~~p~ 156 (599)
+-+++. |+|....+..+ ..++.+.+.+.+. |+.+........+. +-...+.++....-+|+++..+ .
T Consensus 142 ~w~~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~--gi~v~~~~~~~~~~~d~~~~l~~ik~~~~iii~~~~~------~ 213 (405)
T cd06385 142 GWRSHAMLIYSDNKVDDRPCYFAMEGLYMELKKN--NITVVDLVFEEDDLINYTTLLQDIKQKGRVIYVCCSP------D 213 (405)
T ss_pred CCeEEEEEEEecCcccccchHHHHHHHHHHHHhC--CeEEEEeeccCCchhhHHHHHHHHhhcceEEEEeCCH------H
Confidence 344555 67776654322 1466777777655 65543332221111 1122555565555455554433 4
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEee
Q 007547 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGL 185 (599)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~aVFGl 185 (599)
.+..|+....+.. +.+..|+.|+.
T Consensus 214 ~~~~i~~~a~~~g-----~~~~~y~~i~~ 237 (405)
T cd06385 214 IFRRLMLQFWREG-----LPSEDYVFFYI 237 (405)
T ss_pred HHHHHHHHHHHcC-----CCCCcEEEEEe
Confidence 5666777766643 55566776664
No 274
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=21.24 E-value=2.2e+02 Score=30.97 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=41.7
Q ss_pred hccCCeEEEEeecCCCCCCChhHHHHHHHHhcCC-CCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 136 LKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN-DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 136 l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~-~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
+.+..+.+.-+|-+ +. ...++.-+-.+.... ..+..+++++++|+|+| .+++.+.++|+.+|.+.++
T Consensus 77 ~~~~gI~v~napg~-na--~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G--------~IG~~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 77 LKQAGIGFSAAPGC-NA--IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVG--------NVGRRLQARLEALGIKTLL 144 (378)
T ss_pred HHHCCCEEEECCCc-Cc--hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcC--------HHHHHHHHHHHHCCCEEEE
Confidence 44555555555544 22 234443333333211 12345899999999976 4689999999999998764
No 275
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=21.22 E-value=2.7e+02 Score=29.95 Aligned_cols=87 Identities=9% Similarity=0.095 Sum_probs=47.2
Q ss_pred eEEEEEECC-Cch--HHHHHHHHHHHHHhhhCCCeEEEEeC---CCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhH
Q 007547 85 KVTVFYGTQ-TGT--AEGFAKALAEEIKARYEKAAVKVVDL---DDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 85 ~v~I~YgSq-tGt--te~~A~~la~~l~~~~~g~~v~v~dl---~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na 158 (599)
++.|+|... ++. .-..++.+.+.+.++ |+.+..... ++.|. ...+.++....-+|+++..+ ..+
T Consensus 146 ~vaiiy~~~~~~~~~~~~~~~~~~~~~~~~--gi~v~~~~~~~~~~~d~--~~~l~~ik~~~~vIi~~~~~------~~~ 215 (399)
T cd06384 146 RAALLYLDLKTDDRPHYFISEGVFLALQEE--NANVSAHPYHIEKNSDI--IEIIQFIKQNGRIVYICGPL------ETF 215 (399)
T ss_pred EEEEEEecCCccCCcceEehHHHHHHHHhc--CceEEEEEEeccchhhH--HHHHHHHhhcccEEEEeCCc------hHH
Confidence 677888532 221 000234455555555 655443321 12222 23666676544455544444 466
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEeec
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLG 186 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlG 186 (599)
..|+..+.+.. +.+..|..|+++
T Consensus 216 ~~i~~qa~~~g-----~~~~~y~~i~~d 238 (399)
T cd06384 216 LEIMLQAQREG-----LTPGDYVFFYLD 238 (399)
T ss_pred HHHHHHHHHcC-----CCCCcEEEEEeh
Confidence 77888887765 677888888754
No 276
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=21.16 E-value=2.6e+02 Score=28.23 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=56.8
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCC-CCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD-DYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~-d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
.-+|+-|+..|....+-+.|...+.+.- | ++++||- |...++ +++...+.+..++..|+. --.-=.++.+..+
T Consensus 104 ~g~vVigtveGDvHdIGk~iV~~ml~~a-G--fevidLG~dvP~e~--fve~a~e~k~d~v~~Sal-MTttm~~~~~viE 177 (227)
T COG5012 104 LGKVVIGTVEGDVHDIGKNIVATMLEAA-G--FEVIDLGRDVPVEE--FVEKAKELKPDLVSMSAL-MTTTMIGMKDVIE 177 (227)
T ss_pred CceEEEEeecccHHHHHHHHHHHHHHhC-C--cEEEecCCCCCHHH--HHHHHHHcCCcEEechHH-HHHHHHHHHHHHH
Confidence 4678889999999999998888776543 3 6789994 555554 777777766666655544 1111123555666
Q ss_pred HHhcCCCCCCCCCCcEEEEEe
Q 007547 164 WFTEGNDRGPWLQQLKFGVFG 184 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFG 184 (599)
.|++.. ++++-...+|
T Consensus 178 ~L~eeG-----iRd~v~v~vG 193 (227)
T COG5012 178 LLKEEG-----IRDKVIVMVG 193 (227)
T ss_pred HHHHcC-----CccCeEEeec
Confidence 777654 5554444444
No 277
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=20.81 E-value=2.7e+02 Score=28.65 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHhhhCCCeEEEEeCCC--CCCCchHHHhhh-c-cCC-eEEEEeecCCCCCCChhHHHHHHHHhc-CC
Q 007547 96 TAEGFAKALAEEIKARYEKAAVKVVDLDD--YAMDDEQYEEKL-K-KET-LAFFMVATYGDGEPTDNAARFYKWFTE-GN 169 (599)
Q Consensus 96 tte~~A~~la~~l~~~~~g~~v~v~dl~d--~~~~~~~~~~~l-~-~~~-~vif~~sTyG~G~~p~na~~F~~~L~~-~~ 169 (599)
+..++|+.|++.+.+. |+.+...|-.. +|-.----+.-+ . ..+ .+|.++-.. ...+...-+|=+.|.+ ..
T Consensus 88 g~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~--~~~~~~~~~lG~al~~~l~ 163 (271)
T cd07373 88 SDTALAEACVTACPEH--GVHARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNL--YHSGEITEKLGAIAADAAK 163 (271)
T ss_pred CCHHHHHHHHHHHHHC--CCcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCC--CCCHHHHHHHHHHHHHHHH
Confidence 4577899999999887 77776555432 332220011112 1 122 244333322 2233333344444543 11
Q ss_pred CCCCCCCCcEEEEEeecCcch
Q 007547 170 DRGPWLQQLKFGVFGLGNRQY 190 (599)
Q Consensus 170 ~~~~~l~~~~~aVFGlGds~Y 190 (599)
-.+++++|+|+|+-+.
T Consensus 164 -----~~~~rV~iIgSG~lSH 179 (271)
T cd07373 164 -----DQNKRVAVVGVGGLSG 179 (271)
T ss_pred -----HcCCeEEEEEeccccc
Confidence 1248999999998875
No 278
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=20.42 E-value=2.4e+02 Score=24.20 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCc---chhHHHHHHHHHHHHHHHCCCeEEecceeecCCC
Q 007547 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR---QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ 222 (599)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds---~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~ 222 (599)
+....-..+..+.|++ +|++|-+-.+|=. .|+.-..+.+.+.+.+.+.|+.|+.-....|+..
T Consensus 13 ~s~~~~V~~~i~~i~~--------sgl~y~v~pm~T~iEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikId~R~ 78 (92)
T PF01910_consen 13 ESVSAYVAEAIEVIKE--------SGLKYEVGPMGTTIEGELDEVMALIKEAHEALFEAGAKRVVTVIKIDDRR 78 (92)
T ss_dssp SHHHHHHHHHHHHHHT--------SSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTTSSEEEEEEEEEEES
T ss_pred CCHHHHHHHHHHHHHH--------cCCceEEcCCccEEEecHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEcC
Confidence 3444445556667754 4677766555311 3777888899999999999999999998888643
No 279
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.07 E-value=3.5e+02 Score=31.71 Aligned_cols=83 Identities=24% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeCCCCCCC-c----hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCC
Q 007547 100 FAKALAEEIKARYEKAAVKVVDLDDYAMD-D----EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (599)
Q Consensus 100 ~A~~la~~l~~~~~g~~v~v~dl~d~~~~-~----~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~ 174 (599)
-+..+++.|.+. |..+..+.+=++... + ...+..+.+++.+||.|++- ...|++.+... +
T Consensus 14 qa~~la~~L~~~--G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nA--------V~~~~~~l~~~-----~ 78 (656)
T PRK06975 14 QSAALAAQLAAA--GLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNA--------VDRALARLDAI-----W 78 (656)
T ss_pred HHHHHHHHHHHc--CCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHH--------HHHHHHHHHhh-----C
Confidence 345555666656 666544432222110 0 12335577889888887543 45578887653 2
Q ss_pred CCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCe
Q 007547 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGA 210 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~ 210 (599)
+.+.++++.| +.-.+.|++.|..
T Consensus 79 ~~~~~i~AVG-------------~~Ta~aL~~~Gi~ 101 (656)
T PRK06975 79 PHALPVAVVG-------------PGSVAALARHGIA 101 (656)
T ss_pred ccCCeEEEEC-------------HHHHHHHHHcCCC
Confidence 4567888887 3334455667765
No 280
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.06 E-value=5.7e+02 Score=21.99 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCe-EEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcE
Q 007547 101 AKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLK 179 (599)
Q Consensus 101 A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~-vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~ 179 (599)
...|+..|++. |+++..+|.+... +++...+.+.+. +|.++.++.... ..+.++.+.++.. ..+.+
T Consensus 17 l~~la~~l~~~--G~~v~~~d~~~~~---~~l~~~~~~~~pd~V~iS~~~~~~~--~~~~~l~~~~k~~------~p~~~ 83 (121)
T PF02310_consen 17 LLYLAAYLRKA--GHEVDILDANVPP---EELVEALRAERPDVVGISVSMTPNL--PEAKRLARAIKER------NPNIP 83 (121)
T ss_dssp HHHHHHHHHHT--TBEEEEEESSB-H---HHHHHHHHHTTCSEEEEEESSSTHH--HHHHHHHHHHHTT------CTTSE
T ss_pred HHHHHHHHHHC--CCeEEEECCCCCH---HHHHHHHhcCCCcEEEEEccCcCcH--HHHHHHHHHHHhc------CCCCE
Confidence 34667777777 8888888775422 235555554433 344444342222 3445566666553 34455
Q ss_pred EEEEe
Q 007547 180 FGVFG 184 (599)
Q Consensus 180 ~aVFG 184 (599)
+.+=|
T Consensus 84 iv~GG 88 (121)
T PF02310_consen 84 IVVGG 88 (121)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55555
Done!