Query 007547
Match_columns 599
No_of_seqs 374 out of 2711
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 1.6E-99 5E-104 858.0 55.7 506 71-598 6-521 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 1.3E-95 4E-100 834.3 51.6 499 71-598 37-584 (682)
3 1tll_A Nitric-oxide synthase, 100.0 6.9E-91 2.4E-95 795.5 50.2 492 80-598 8-556 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 7.5E-69 2.6E-73 585.2 37.9 334 258-598 21-361 (458)
5 2qtl_A MSR;, methionine syntha 100.0 1.8E-64 6E-69 561.7 35.3 306 285-598 105-435 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 4.7E-62 1.6E-66 524.0 30.4 289 292-598 4-295 (393)
7 1f20_A Nitric-oxide synthase; 100.0 5.5E-61 1.9E-65 522.5 30.5 301 288-598 24-335 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 1.4E-57 4.7E-62 486.7 29.2 274 286-598 3-278 (374)
9 3hr4_A Nitric oxide synthase, 100.0 7E-35 2.4E-39 287.5 18.7 162 74-247 31-192 (219)
10 1bvy_F Protein (cytochrome P45 100.0 3.9E-28 1.3E-32 235.7 15.8 147 82-240 20-167 (191)
11 1ykg_A SIR-FP, sulfite reducta 99.9 2.4E-27 8.4E-32 224.9 15.3 150 82-243 8-157 (167)
12 2hna_A Protein MIOC, flavodoxi 99.9 1.9E-27 6.7E-32 220.5 6.0 144 83-239 1-146 (147)
13 3f6r_A Flavodoxin; FMN binding 99.9 1E-25 3.5E-30 208.7 14.6 143 83-238 1-147 (148)
14 3jqq_A Ferredoxin NADP reducta 99.9 3.3E-24 1.1E-28 223.8 18.1 210 288-598 9-230 (316)
15 2bmw_A Ferredoxin--NADP reduct 99.9 2.1E-23 7E-28 216.0 20.2 184 287-598 14-207 (304)
16 1f4p_A Flavodoxin; electron tr 99.9 1.4E-23 4.8E-28 193.9 14.4 142 84-238 1-146 (147)
17 1fnb_A Ferredoxin-NADP+ reduct 99.9 3.3E-23 1.1E-27 215.6 18.7 182 288-598 31-217 (314)
18 3vo2_A Putative uncharacterize 99.9 1.1E-22 3.8E-27 211.5 19.6 182 288-598 27-213 (310)
19 2rc5_A Ferredoxin-NADP reducta 99.9 5.2E-22 1.8E-26 206.5 18.6 189 288-598 15-218 (314)
20 2b5o_A FNR, ferredoxin--NADP r 99.9 1.3E-21 4.5E-26 210.7 18.8 184 288-598 116-305 (402)
21 2wc1_A Flavodoxin; electron tr 99.9 1.8E-22 6.2E-27 193.7 8.6 146 83-242 1-179 (182)
22 1yob_A Flavodoxin 2, flavodoxi 99.9 3.2E-22 1.1E-26 191.7 9.6 143 84-240 1-176 (179)
23 2fcr_A Flavodoxin; electron tr 99.9 2E-21 6.8E-26 185.1 13.7 140 85-239 1-171 (173)
24 2bmv_A Flavodoxin; electron tr 99.9 3.4E-22 1.2E-26 188.5 7.5 138 83-239 1-163 (164)
25 1ag9_A Flavodoxin; electron tr 99.9 1.4E-21 4.6E-26 186.6 10.4 143 84-241 1-169 (175)
26 1obo_A Flavodoxin; electron tr 99.8 9.5E-21 3.3E-25 179.1 15.2 142 84-240 2-168 (169)
27 1czn_A Flavodoxin; FMN binding 99.8 8.2E-21 2.8E-25 179.5 13.2 142 84-239 1-167 (169)
28 3lo8_A Ferredoxin--NADP reduct 99.8 1.4E-19 4.8E-24 187.9 19.2 184 288-598 22-215 (311)
29 5nul_A Flavodoxin; electron tr 99.8 7.1E-20 2.4E-24 167.3 13.9 132 86-235 1-135 (138)
30 4dik_A Flavoprotein; TM0755, e 99.8 1.6E-20 5.6E-25 202.3 11.3 182 10-236 218-406 (410)
31 3fni_A Putative diflavin flavo 99.8 9E-20 3.1E-24 171.6 10.7 144 82-241 3-149 (159)
32 3hly_A Flavodoxin-like domain; 99.8 1.2E-19 4E-24 171.1 10.8 142 84-241 1-144 (161)
33 2fz5_A Flavodoxin; alpha/beta 99.7 9.9E-18 3.4E-22 152.1 13.3 132 86-236 2-135 (137)
34 2xod_A NRDI protein, NRDI; fla 99.7 7.2E-18 2.5E-22 150.7 7.9 116 86-236 1-117 (119)
35 2r6h_A NADH:ubiquinone oxidore 99.7 2.7E-17 9.1E-22 168.5 11.3 120 467-598 82-207 (290)
36 1ep3_B Dihydroorotate dehydrog 99.7 9.2E-18 3.1E-22 170.0 7.7 119 457-598 35-158 (262)
37 1tvc_A Methane monooxygenase c 99.7 2.3E-17 8E-22 165.6 9.7 121 457-598 45-167 (250)
38 1umk_A B5R, NADH-cytochrome B5 99.7 3E-17 1E-21 167.0 9.5 118 470-598 64-197 (275)
39 2eix_A NADH-cytochrome B5 redu 99.7 4.6E-17 1.6E-21 162.5 9.8 109 470-598 59-167 (243)
40 1qfj_A Protein (flavin reducta 99.7 3.3E-17 1.1E-21 162.4 8.6 121 457-598 31-152 (232)
41 4eh1_A Flavohemoprotein; struc 99.7 1.1E-16 3.8E-21 159.6 11.5 112 468-598 51-163 (243)
42 1gvh_A Flavohemoprotein; oxido 99.7 1E-16 3.5E-21 171.8 10.8 108 469-598 201-309 (396)
43 2cnd_A NADH-dependent nitrate 99.7 8.7E-17 3E-21 163.0 9.8 118 470-598 60-188 (270)
44 1krh_A Benzoate 1,2-dioxygenas 99.7 1.1E-16 3.9E-21 167.8 9.4 119 457-598 140-260 (338)
45 1fdr_A Flavodoxin reductase; f 99.7 6.7E-17 2.3E-21 161.8 6.9 108 469-598 47-156 (248)
46 4g1v_A Flavohemoglobin; three 99.6 2.9E-16 1E-20 168.5 11.1 114 469-598 204-322 (399)
47 2pia_A Phthalate dioxygenase r 99.6 1.5E-16 5E-21 166.1 8.2 119 457-598 40-160 (321)
48 1rlj_A NRDI protein; flavoprot 99.6 1.2E-16 4E-21 147.0 6.2 123 82-238 7-130 (139)
49 1cqx_A Flavohemoprotein; globi 99.6 3.1E-16 1.1E-20 168.4 10.4 112 469-598 203-315 (403)
50 1ycg_A Nitric oxide reductase; 99.6 2.6E-16 8.8E-21 168.0 8.2 143 83-239 251-396 (398)
51 2bgi_A Ferredoxin-NADP(H) redu 99.6 2.2E-16 7.5E-21 160.7 6.2 108 469-598 61-170 (272)
52 2qdx_A Ferredoxin reductase; o 99.6 3E-16 1E-20 158.1 5.6 107 470-598 48-156 (257)
53 4fk8_A Ferredoxin--NADP reduct 99.6 2.1E-16 7.2E-21 160.5 4.2 107 470-598 64-172 (271)
54 1e5d_A Rubredoxin\:oxygen oxid 99.6 1.8E-15 6.2E-20 161.7 11.6 146 82-241 251-398 (402)
55 2ark_A Flavodoxin; FMN, struct 99.5 1.4E-13 4.9E-18 132.2 15.5 149 83-243 4-169 (188)
56 2q9u_A A-type flavoprotein; fl 99.5 2E-14 6.9E-19 154.5 9.9 145 83-241 256-405 (414)
57 2ohh_A Type A flavoprotein FPR 99.5 1.9E-14 6.4E-19 153.9 9.5 147 81-239 254-402 (404)
58 2a5l_A Trp repressor binding p 99.5 2.1E-13 7.1E-18 131.6 14.6 128 83-214 5-145 (200)
59 3b6i_A Flavoprotein WRBA; flav 99.4 1E-12 3.5E-17 126.5 14.0 127 83-214 1-141 (198)
60 1ydg_A Trp repressor binding p 99.4 2.8E-12 9.6E-17 125.1 15.1 155 82-242 5-200 (211)
61 2zki_A 199AA long hypothetical 99.4 2.9E-12 1E-16 123.6 14.5 154 83-242 4-194 (199)
62 3n3a_C Protein NRDI; ribonucle 99.4 6E-13 2E-17 122.8 8.6 124 83-237 20-150 (153)
63 3d7n_A Flavodoxin, WRBA-like p 99.3 1.5E-11 5.2E-16 118.7 13.6 122 82-213 5-127 (193)
64 3klb_A Putative flavoprotein; 99.3 1.5E-11 5.3E-16 115.5 12.6 133 83-235 4-160 (162)
65 2vzf_A NADH-dependent FMN redu 99.3 1E-11 3.5E-16 120.2 11.4 123 83-214 2-138 (197)
66 4ici_A Putative flavoprotein; 99.3 3.1E-11 1.1E-15 114.6 14.3 135 81-235 11-168 (171)
67 2gpj_A Siderophore-interacting 99.3 1.4E-12 4.8E-17 131.3 4.7 110 457-592 40-153 (252)
68 1t5b_A Acyl carrier protein ph 99.2 6.7E-10 2.3E-14 106.8 16.5 157 83-241 1-197 (201)
69 3edo_A Flavoprotein, putative 99.2 1.2E-10 4.1E-15 108.0 10.7 126 83-232 3-150 (151)
70 1sqs_A Conserved hypothetical 99.0 4.7E-09 1.6E-13 104.7 16.2 154 83-241 1-179 (242)
71 1rtt_A Conserved hypothetical 99.0 2.7E-09 9.2E-14 102.5 12.4 124 83-213 6-143 (193)
72 1t0i_A YLR011WP; FMN binding p 99.0 7E-09 2.4E-13 99.3 14.4 122 84-215 1-151 (191)
73 3lrx_A Putative hydrogenase; a 98.9 4.8E-10 1.6E-14 104.9 5.4 65 525-598 5-70 (158)
74 3gfs_A FMN-dependent NADPH-azo 98.9 1.4E-09 4.8E-14 102.9 8.1 116 84-214 1-132 (174)
75 2q62_A ARSH; alpha/beta, flavo 98.9 2.8E-08 9.6E-13 99.7 16.3 127 82-213 33-170 (247)
76 3a1f_A Cytochrome B-245 heavy 98.9 2.5E-10 8.7E-15 108.2 1.1 69 529-598 3-75 (186)
77 2hpv_A FMN-dependent NADH-azor 98.8 1.1E-07 3.8E-12 92.1 17.7 157 83-241 1-203 (208)
78 3lyu_A Putative hydrogenase; t 98.8 2.9E-09 1E-13 97.7 5.8 64 527-599 3-66 (142)
79 2fzv_A Putative arsenical resi 98.8 7.7E-08 2.6E-12 98.0 15.8 127 81-212 56-194 (279)
80 3fvw_A Putative NAD(P)H-depend 98.7 2.1E-07 7.3E-12 89.5 15.0 128 83-216 2-147 (192)
81 1rli_A Trp repressor binding p 98.7 1.3E-07 4.6E-12 89.4 13.3 125 83-215 3-154 (184)
82 3r6w_A FMN-dependent NADH-azor 98.7 6.1E-07 2.1E-11 87.4 17.3 157 83-241 1-207 (212)
83 3k1y_A Oxidoreductase; structu 98.6 6.3E-07 2.2E-11 86.3 13.5 126 82-214 10-154 (191)
84 3rpe_A MDAB, modulator of drug 98.5 1.9E-06 6.4E-11 84.7 16.3 155 82-243 24-216 (218)
85 4hs4_A Chromate reductase; tri 98.5 1.2E-06 4E-11 84.9 14.5 124 83-213 6-144 (199)
86 3lcm_A SMU.1420, putative oxid 98.5 1.2E-06 4.2E-11 84.4 14.6 156 84-243 1-189 (196)
87 1d4a_A DT-diaphorase, quinone 98.4 3.6E-06 1.2E-10 85.5 16.4 158 83-243 2-215 (273)
88 3tem_A Ribosyldihydronicotinam 98.4 4.2E-06 1.4E-10 82.7 15.9 160 83-245 1-216 (228)
89 3f2v_A General stress protein 98.4 2.1E-06 7.2E-11 82.7 13.0 158 83-243 1-182 (192)
90 2amj_A Modulator of drug activ 98.4 6.9E-06 2.4E-10 79.7 16.3 148 82-233 11-197 (204)
91 3p0r_A Azoreductase; structura 98.4 4.6E-06 1.6E-10 81.4 14.7 157 83-241 4-206 (211)
92 3s2y_A Chromate reductase; ura 97.7 4.8E-08 1.6E-12 94.8 0.0 125 83-214 6-145 (199)
93 3u7i_A FMN-dependent NADH-azor 98.2 4.6E-05 1.6E-09 75.0 17.2 159 83-242 4-213 (223)
94 3svl_A Protein YIEF; E. coli C 98.2 1.9E-05 6.5E-10 76.0 14.0 154 82-242 3-182 (193)
95 3u7r_A NADPH-dependent FMN red 98.1 0.00011 3.7E-09 70.6 16.5 125 83-213 2-139 (190)
96 3ha2_A NADPH-quinone reductase 98.1 5.2E-05 1.8E-09 71.9 14.1 152 84-243 1-168 (177)
97 4gi5_A Quinone reductase; prot 97.7 0.00094 3.2E-08 67.8 17.5 164 80-246 19-245 (280)
98 3l9w_A Glutathione-regulated p 97.7 0.00054 1.9E-08 73.5 16.0 157 83-243 236-408 (413)
99 1ccw_A Protein (glutamate muta 73.9 5.8 0.0002 35.1 6.3 111 87-215 5-119 (137)
100 1tvm_A PTS system, galactitol- 72.7 6.9 0.00024 33.5 6.3 43 82-126 20-64 (113)
101 3rht_A (gatase1)-like protein; 70.1 5.5 0.00019 39.5 5.7 83 83-184 4-86 (259)
102 4e5v_A Putative THUA-like prot 66.9 37 0.0013 33.8 11.1 74 83-167 4-85 (281)
103 1t0b_A THUA-like protein; treh 58.7 26 0.00087 34.4 8.1 73 100-186 33-106 (252)
104 1e2b_A Enzyme IIB-cellobiose; 58.6 12 0.00042 31.6 5.0 56 83-149 3-60 (106)
105 2l2q_A PTS system, cellobiose- 56.2 10 0.00035 32.1 4.1 34 83-119 4-37 (109)
106 1mkz_A Molybdenum cofactor bio 56.1 16 0.00055 33.6 5.7 58 174-231 7-64 (172)
107 3re1_A Uroporphyrinogen-III sy 49.9 28 0.00096 34.1 6.8 104 79-214 10-118 (269)
108 2yxb_A Coenzyme B12-dependent 49.7 64 0.0022 29.1 8.7 128 85-239 18-146 (161)
109 3nbm_A PTS system, lactose-spe 49.6 33 0.0011 29.1 6.2 97 83-205 6-105 (108)
110 3gv0_A Transcriptional regulat 48.9 1.8E+02 0.0063 27.6 13.1 115 83-215 8-133 (288)
111 3ju3_A Probable 2-oxoacid ferr 48.2 15 0.00051 31.6 3.9 57 83-145 14-71 (118)
112 3l49_A ABC sugar (ribose) tran 45.4 2E+02 0.0068 27.2 12.2 139 83-241 5-153 (291)
113 3pzy_A MOG; ssgcid, seattle st 43.7 15 0.0005 33.6 3.3 57 175-232 5-63 (164)
114 2pjk_A 178AA long hypothetical 42.6 13 0.00043 34.6 2.7 46 175-220 13-65 (178)
115 1vkr_A Mannitol-specific PTS s 42.2 35 0.0012 29.7 5.3 42 82-125 12-56 (125)
116 3tb6_A Arabinose metabolism tr 41.8 1.9E+02 0.0065 27.3 11.4 141 83-241 15-164 (298)
117 1vd2_A Protein kinase C, IOTA 38.5 60 0.0021 26.6 5.9 57 331-393 15-74 (89)
118 3iwt_A 178AA long hypothetical 37.9 25 0.00084 32.3 3.9 46 175-220 13-65 (178)
119 1iow_A DD-ligase, DDLB, D-ALA\ 37.6 1.4E+02 0.0049 28.8 9.8 43 83-127 2-47 (306)
120 3qk7_A Transcriptional regulat 37.5 2.8E+02 0.0094 26.4 12.7 114 83-215 6-132 (294)
121 3m9w_A D-xylose-binding peripl 36.9 2.9E+02 0.0099 26.5 12.5 139 84-242 3-152 (313)
122 4es6_A Uroporphyrinogen-III sy 35.5 52 0.0018 31.6 6.0 89 100-214 17-110 (254)
123 3czc_A RMPB; alpha/beta sandwi 35.1 19 0.00065 30.5 2.4 33 82-116 17-49 (110)
124 1tvc_A Methane monooxygenase c 35.0 41 0.0014 32.1 5.1 46 290-340 6-56 (250)
125 2r6h_A NADH:ubiquinone oxidore 33.0 69 0.0024 31.1 6.6 42 294-340 9-51 (290)
126 1y5e_A Molybdenum cofactor bio 32.9 34 0.0012 31.2 3.9 57 175-231 11-67 (169)
127 1qfj_A Protein (flavin reducta 31.3 79 0.0027 29.6 6.4 40 295-340 3-42 (232)
128 3mw8_A Uroporphyrinogen-III sy 31.1 64 0.0022 30.6 5.8 82 101-211 13-96 (240)
129 4eg0_A D-alanine--D-alanine li 30.2 1E+02 0.0035 30.5 7.4 42 83-126 13-57 (317)
130 1ep3_B Dihydroorotate dehydrog 29.9 58 0.002 31.4 5.3 41 296-341 7-47 (262)
131 1krh_A Benzoate 1,2-dioxygenas 28.0 89 0.003 31.3 6.5 42 294-340 108-151 (338)
132 3k4h_A Putative transcriptiona 27.9 2.3E+02 0.0079 26.7 9.4 137 83-241 8-159 (292)
133 4f06_A Extracellular ligand-bi 27.9 4E+02 0.014 26.3 11.6 49 157-215 126-174 (371)
134 1umk_A B5R, NADH-cytochrome B5 27.7 1E+02 0.0035 29.6 6.7 43 292-339 14-58 (275)
135 3g1w_A Sugar ABC transporter; 27.5 3.9E+02 0.013 25.2 11.1 138 83-241 4-154 (305)
136 2cnd_A NADH-dependent nitrate 27.5 93 0.0032 29.8 6.3 43 292-339 10-54 (270)
137 3egc_A Putative ribose operon 26.9 2.4E+02 0.0083 26.6 9.3 137 83-241 8-153 (291)
138 3jy6_A Transcriptional regulat 26.8 3.9E+02 0.013 24.9 11.0 115 82-215 6-129 (276)
139 2bgi_A Ferredoxin-NADP(H) redu 26.7 90 0.0031 30.2 6.1 43 292-340 14-56 (272)
140 3lkv_A Uncharacterized conserv 26.5 91 0.0031 30.6 6.2 46 76-123 133-178 (302)
141 3kbq_A Protein TA0487; structu 26.2 43 0.0015 30.9 3.3 55 178-232 4-60 (172)
142 3o74_A Fructose transport syst 26.2 3.1E+02 0.011 25.4 9.9 115 84-215 3-126 (272)
143 4eyg_A Twin-arginine transloca 25.7 1.8E+02 0.0062 28.6 8.4 90 82-187 138-231 (368)
144 2pia_A Phthalate dioxygenase r 25.3 1.3E+02 0.0044 29.9 7.1 42 294-340 8-51 (321)
145 2eix_A NADH-cytochrome B5 redu 25.3 1.6E+02 0.0053 27.6 7.4 42 293-339 10-53 (243)
146 3l6u_A ABC-type sugar transpor 25.0 3.5E+02 0.012 25.4 10.1 116 83-214 8-140 (293)
147 1di6_A MOGA, molybdenum cofact 24.6 44 0.0015 31.4 3.2 55 177-231 3-61 (195)
148 2xdq_A Light-independent proto 24.5 2.5E+02 0.0086 29.4 9.6 112 84-213 197-345 (460)
149 3rfq_A Pterin-4-alpha-carbinol 23.7 35 0.0012 31.8 2.3 46 175-220 28-74 (185)
150 4eyg_A Twin-arginine transloca 23.1 5.2E+02 0.018 25.0 11.7 47 158-214 127-173 (368)
151 3p9z_A Uroporphyrinogen III co 22.7 1.8E+02 0.0061 27.4 7.2 94 82-212 109-207 (229)
152 1jeo_A MJ1247, hypothetical pr 22.3 3.8E+02 0.013 23.6 9.1 65 87-167 43-107 (180)
153 1jlj_A Gephyrin; globular alph 22.2 51 0.0018 30.7 3.1 57 175-231 12-73 (189)
154 2k8s_A Thioredoxin; dimer, str 22.1 1E+02 0.0035 23.4 4.5 39 84-124 2-40 (80)
155 2qdx_A Ferredoxin reductase; o 21.6 1.4E+02 0.0049 28.3 6.4 40 295-340 4-43 (257)
156 4fk8_A Ferredoxin--NADP reduct 21.0 1.1E+02 0.0039 29.3 5.5 40 294-339 19-58 (271)
157 4eh1_A Flavohemoprotein; struc 20.6 1.8E+02 0.0061 27.2 6.7 41 296-341 5-47 (243)
158 2iuy_A Avigt4, glycosyltransfe 20.6 1.1E+02 0.0037 30.0 5.4 40 83-124 3-57 (342)
159 3td9_A Branched chain amino ac 20.3 3.3E+02 0.011 26.6 9.1 78 82-169 148-228 (366)
160 3s40_A Diacylglycerol kinase; 20.3 6.1E+02 0.021 24.7 11.2 124 81-220 6-135 (304)
161 2is8_A Molybdopterin biosynthe 20.3 34 0.0011 31.0 1.3 54 178-231 2-57 (164)
162 3h5l_A Putative branched-chain 20.2 2.2E+02 0.0074 28.8 7.8 95 82-190 163-260 (419)
163 1ego_A Glutaredoxin; electron 20.1 1.6E+02 0.0054 22.2 5.2 40 84-124 1-40 (85)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=1.6e-99 Score=857.97 Aligned_cols=506 Identities=40% Similarity=0.730 Sum_probs=440.9
Q ss_pred cchhhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeec
Q 007547 71 KDEDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVAT 148 (599)
Q Consensus 71 ~~~~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sT 148 (599)
.+|+++++|.+.+++|+|+|||||||||++|++|++++.+. |+.++++|+++++.++ +..+. +++++||++||
T Consensus 6 ~~~~~~~~~~~~~~~i~I~YgS~tGnte~~A~~la~~l~~~--g~~~~v~~~~~~~~~~---l~~~~~~~~~~vi~~~sT 80 (618)
T 3qe2_A 6 RESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRY--GMRGMSADPEEYDLAD---LSSLPEIDNALVVFCMAT 80 (618)
T ss_dssp -CCCHHHHHHHHTCSEEEEEECSSSHHHHHHHHHHHHGGGG--TCCEEEECGGGSCGGG---GGGGGGSTTCEEEEEEEC
T ss_pred hHHHHHHHHHhcCCeEEEEEECChhHHHHHHHHHHHHHHhC--CCceEEechHHcCHHH---hhhcccccCcEEEEEcCc
Confidence 34689999998889999999999999999999999999887 8999999999999877 22222 47899999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHH
Q 007547 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDF 228 (599)
Q Consensus 149 yG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~ 228 (599)
||+|++|+||..|+++|.+...+ |+|++||||||||++|+|||.++|.++++|+++||++++++|++|++.+++++|
T Consensus 81 ~G~G~~pd~~~~F~~~L~~~~~~---l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~~~~~~~ 157 (618)
T 3qe2_A 81 YGEGDPTDNAQDFYDWLQETDVD---LSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDF 157 (618)
T ss_dssp BGGGBCCGGGHHHHHHHHHCCCC---CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTSCHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhhcccc---ccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCCCcHHHH
Confidence 99999999999999999874323 999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCcccCCceEEEEcCCc----ccccCCCC-CCCCCCCCCCCCCCCeeEEEEEee
Q 007547 229 TAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPT----VTSSVDNY-SNMPNGNASFDIHHPCRVNVAVRR 303 (599)
Q Consensus 229 ~~W~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~p~~a~V~~~~ 303 (599)
++|++.+|++|++.+..+.... . ...+.+++...... +..++... ....+...+|+..+||.|+|++|+
T Consensus 158 ~~W~~~l~~~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~~n~ 231 (618)
T 3qe2_A 158 ITWREQFWLAVCEHFGVEATGE---E---SSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNR 231 (618)
T ss_dssp HHHHHHHHHHHHHHHTCCCC---------CCCCSEEEEECTTCCGGGSBCSCCSSTTTTTSCCSCCSSSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccc---c---ccccceeEEecccccccccccccccccccccccCCCcccCCcEEEEEEeEE
Confidence 9999999999999875432110 0 12245666554211 11111111 111234567899999999999999
Q ss_pred eecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCc
Q 007547 304 ELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGP 383 (599)
Q Consensus 304 ~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~~pfp~p 383 (599)
+|+. +++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|++|+++..++.. +.+.|||.|
T Consensus 232 ~Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~-----~~~~~~p~~ 305 (618)
T 3qe2_A 232 KLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES-----NKKHPFPCP 305 (618)
T ss_dssp ECSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTC-----SCCSSSSSS
T ss_pred EcCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCccc-----cCCCCCCCc
Confidence 9996 5679999999999999999999999999999999999999999999999999998765422 356789999
Q ss_pred hHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhcc--CCCChhHHHHHHHhcCCCHHHHHhhCCCCCCChHHH
Q 007547 384 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLS--SPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVF 461 (599)
Q Consensus 384 ~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~--s~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~~~l 461 (599)
+|++++|++|+||+++|+|+||+.||.||+|+.+|++|+.|+ +++|+++|.+|+.++++|++|||++||++++|+++|
T Consensus 306 ~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l 385 (618)
T 3qe2_A 306 TSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHL 385 (618)
T ss_dssp EEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHH
T ss_pred eEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHH
Confidence 999999999999999999999999999999999999999998 778999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCC-CCCCCCceEEEEEeeCCCCcCCC
Q 007547 462 FAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDCSWAPIFIRPSNFKLPA 540 (599)
Q Consensus 462 l~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~-g~~~~~~~~v~i~~~~~~F~Lp~ 540 (599)
++.+ |+++||+|||||+|..++++++|+|++++++++.|+.+.|+||+||+++.+ |+ ....+.|+|++|.|.|+||.
T Consensus 386 ~~~l-p~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd-~~~~~~v~v~~p~g~F~lp~ 463 (618)
T 3qe2_A 386 CELL-PRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGE-NGGRALVPMFVRKSQFRLPF 463 (618)
T ss_dssp HHHS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCS
T ss_pred HHhc-cccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCC-CCcceEEEEEEecCcccCCC
Confidence 9999 999999999999998888999999999999999999999999999999888 61 00012899999999999999
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 541 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 541 ~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
++.+|+||||+||||||||||||+|.++.++|...++++||||||+++.|++|++||+
T Consensus 464 ~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~ 521 (618)
T 3qe2_A 464 KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELA 521 (618)
T ss_dssp STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHH
T ss_pred CCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHH
Confidence 8899999999999999999999999876655555789999999999966999999996
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=1.3e-95 Score=834.33 Aligned_cols=499 Identities=31% Similarity=0.544 Sum_probs=433.7
Q ss_pred cchhhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHH-hhhCCCeEEEEeCCCCCCCchHHHhhhccC-CeEEEEeec
Q 007547 71 KDEDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIK-ARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVAT 148 (599)
Q Consensus 71 ~~~~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~-~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~-~~vif~~sT 148 (599)
+++++++++.+.+++++|+|||||||||++|++|++++. +. |+.++++++++++.++ +.++ +.+||++||
T Consensus 37 ~~~~~~~~~~~~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~--g~~v~v~~l~~~~~~~------l~~~~~~vi~~~sT 108 (682)
T 2bpo_A 37 GNRDIAQVVTENNKNYLVLYASQTGTAEGFAKAFSKELVAKF--NLNVMCADVENYDFES------LNDVPVIVSIFIST 108 (682)
T ss_dssp -CCCHHHHHHHTTCSEEEEEECSSSHHHHHHHHHHHHHHHHH--CCCEEEEETTSSCGGG------GGGCCSEEEEEEEC
T ss_pred cchhHHHHHhcCCCeEEEEEECCchHHHHHHHHHHHHhHHhc--CCceEEeehHHCCHHH------HhhcCCeEEEEeCc
Confidence 467999999999999999999999999999999999998 66 7889999999999887 7788 999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC-CcHHH
Q 007547 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-CIEDD 227 (599)
Q Consensus 149 yG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~-~~e~~ 227 (599)
||+|++|+|+..|+++|.... ...|++++|||||+||++|+|||.++|.++++|+++||+++.+.+++|+++ +.+++
T Consensus 109 ~G~G~~p~~~~~F~~~l~~~~--~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~~~~~~~ 186 (682)
T 2bpo_A 109 YGEGDFPDGAVNFEDFICNAE--AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAGTTDED 186 (682)
T ss_dssp BTTTBCCSSCHHHHHHHHTCC--TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTTTCHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhcc--chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCCcccHHH
Confidence 999999999999999998753 123899999999999999999999999999999999999999999999885 78999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCcccCCceEEEEcC---CcccccCCCCCCC----------CCCCCCCCCCCC
Q 007547 228 FTAWRELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHG---PTVTSSVDNYSNM----------PNGNASFDIHHP 294 (599)
Q Consensus 228 ~~~W~~~l~~~L~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~~~p 294 (599)
|++|.+++|++|++.+..+..... ..+.++++..+ +.+..++++..++ .+...+|+.++|
T Consensus 187 ~~~W~~~l~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 259 (682)
T 2bpo_A 187 YMAWKDSILEVLKDELHLDEQEAK-------FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQP 259 (682)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC-------CCCSBCCEECSSCCTTSCSSCSSGGGSTTSCCCCCTTCCBCSCCBTTBC
T ss_pred HHHHHHHHHHHHHhhcCCcccccc-------cCCcceeEecccCCccccccCccccccccccccccccccccCcccCCCc
Confidence 999999999999987754322110 11223333221 1111122211100 113457889999
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCC
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGS 374 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~ 374 (599)
|.|+|++|++|++ +++|+|+|||||+++++++|+|||||+|||.|+++.|+++|++||+++|++|+++..++
T Consensus 260 ~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~------- 331 (682)
T 2bpo_A 260 YIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDP------- 331 (682)
T ss_dssp CCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSST-------
T ss_pred eEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCc-------
Confidence 9999999999998 77899999999999999999999999999999999999999999999999999986554
Q ss_pred CCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhCC--
Q 007547 375 SLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP-- 452 (599)
Q Consensus 375 ~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~fp-- 452 (599)
+.+.|||.|||++++|++|+||+++|+|+||+.||.||+|+++|++|++|+ +|+++|.+|+..+++|++|||.+||
T Consensus 332 ~~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~ 409 (682)
T 2bpo_A 332 TVKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDG 409 (682)
T ss_dssp TCCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTT
T ss_pred ccCCCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCc
Confidence 346789999999999999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred --CCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCC---CCcccCchhHHHhhcCCC---------
Q 007547 453 --SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT---GRIHKGVCSTWMKNAIPL--------- 518 (599)
Q Consensus 453 --s~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~---g~~~~G~~S~~L~~l~~g--------- 518 (599)
++++|+++|++.+ |+++||+|||||+|...+++++|+|++++++++. ++.+.|+||+||++++++
T Consensus 410 ~~s~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~ 488 (682)
T 2bpo_A 410 AKWDTVPMQFLVESV-PQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAET 488 (682)
T ss_dssp CCCTTSCHHHHHHHS-CBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTS
T ss_pred ccccCCCHHHHHHhC-cccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccc
Confidence 8999999999999 9999999999999987789999999999998886 678899999999998772
Q ss_pred --CCCC---------CceEEEEEeeCCCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhh------cCCCCCCEEEE
Q 007547 519 --EGNG---------DCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ------DGAQLGPALLF 581 (599)
Q Consensus 519 --~~~~---------~~~~v~i~~~~~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~------~g~~~g~~~Lf 581 (599)
++.. .+..|+|+++++.|+||.++.+||||||+||||||||||||+|..+.. .|...++++||
T Consensus 489 ~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~ 568 (682)
T 2bpo_A 489 NLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILF 568 (682)
T ss_dssp CCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEE
T ss_pred ccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEE
Confidence 1100 014899999989999999889999999999999999999999987654 34446899999
Q ss_pred EeccCCCcccchHHhhc
Q 007547 582 FGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 582 ~G~R~~~~D~ly~~El~ 598 (599)
||||++. |++|++||+
T Consensus 569 fG~R~~~-D~ly~dEl~ 584 (682)
T 2bpo_A 569 YGSRNTD-DFLYQDEWP 584 (682)
T ss_dssp EEESSSS-SCTTTTTHH
T ss_pred EecCChh-hhhhHHHHH
Confidence 9999995 999999986
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=6.9e-91 Score=795.46 Aligned_cols=492 Identities=33% Similarity=0.582 Sum_probs=417.4
Q ss_pred hcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHH
Q 007547 80 AAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 80 ~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~ 159 (599)
...+++++|+|||||||||++|++|++.+. . ++.+++++|++|+.++ |.+++++||++||||+|+||+|+.
T Consensus 8 ~~~~~k~~IlY~S~TG~te~~A~~l~~~l~-~--~~~~~v~~m~~~d~~~------l~~~~~vl~vtsT~G~Gdpp~n~~ 78 (688)
T 1tll_A 8 MAKRVKATILYATETGKSQAYAKTLCEIFK-H--AFDAKAMSMEEYDIVH------LEHEALVLVVTSTFGNGDPPENGE 78 (688)
T ss_dssp -CCSCEEEEEEECSSSHHHHHHHHHHHHHT-T--TSEEEEEETTTSCTTS------GGGCSEEEEEECCBTTTBCCGGGH
T ss_pred hcCCCeEEEEEECCchHHHHHHHHHHHHHh-c--CCCcEEeecccCChhH------hccCceEEEEEcccCCCcCCHHHH
Confidence 445779999999999999999999999986 5 7889999999999988 888999999999999999999999
Q ss_pred HHHHHHhcCCC---------------------------------------CCCCCCCcEEEEEeecCcchhHHHHHHHHH
Q 007547 160 RFYKWFTEGND---------------------------------------RGPWLQQLKFGVFGLGNRQYEHFNKIGIVL 200 (599)
Q Consensus 160 ~F~~~L~~~~~---------------------------------------~~~~l~~~~~aVFGlGds~Y~~f~~~~k~l 200 (599)
.|+++|.+... ....|+|++||||||||++|+|||+++|.+
T Consensus 79 ~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~l 158 (688)
T 1tll_A 79 KFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAV 158 (688)
T ss_dssp HHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHH
T ss_pred HHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHH
Confidence 99999986410 013589999999999999999999999999
Q ss_pred HHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHHhccCCCCCCC-C--C---CCC-cccCCceEEEEcCCccc
Q 007547 201 DEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDEDDANT-V--S---TPY-TAAIPEYRVMIHGPTVT 273 (599)
Q Consensus 201 d~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~~~~~~~~~~-~--~---~p~-~~~~~~~~~~~~~~~~~ 273 (599)
+++|+++||++++++++||+..+.+++|++|.+.+|++|++.+..+.+... . . .+. ....+.+++........
T Consensus 159 d~~L~~lGa~rl~~~~~~D~~~g~e~~f~~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (688)
T 1tll_A 159 DTLLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEAPD 238 (688)
T ss_dssp HHHHHHTTCEESSCCEEEETTTTHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-------CCSSSCCTTTEEEEECSCCCC
T ss_pred HHHHHHcCCceeecceeeccCCCcHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcceEEeccccccc
Confidence 999999999999999999998889999999999999999987653322110 0 0 000 01123455543221100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCC-CCccCCCCeEEEeccCCHHHHHHHHHHh
Q 007547 274 SSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGKLL 352 (599)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~-~l~Y~~GD~l~V~p~N~~~~V~~~l~~l 352 (599)
......+++..+||.|+|++|++|++++++|+|+||+||++++ +++|+|||||+|||.|+++.|+++|++|
T Consensus 239 --------~~~~~~~~~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l 310 (688)
T 1tll_A 239 --------LTQGLSNVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERL 310 (688)
T ss_dssp --------HHHHHHHHTTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTC
T ss_pred --------ccccccccccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHh
Confidence 0000123556789999999999999999999999999999875 7999999999999999999999999999
Q ss_pred CC--CCccEEEEecCCCCCCCCC----CCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccC
Q 007547 353 GQ--SLELLFSLHTDNEDGTPRG----SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSS 426 (599)
Q Consensus 353 gl--~~d~~~~l~~~~~~~~~~~----~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s 426 (599)
|+ ++|++|+|+..++...+.+ ...+.+|| |+|++++|++|+||+++|+|+||+.||.||+|+++|++|++|++
T Consensus 311 ~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p-~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~ 389 (688)
T 1tll_A 311 EDAPPANHVVKVEMLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK 389 (688)
T ss_dssp SSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT
T ss_pred CCCCCCCeEEEEeccccccCCCcccccccccCCCC-CccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 86 5789998875432111111 12345788 99999999999999999999999999999999999999999974
Q ss_pred CCChhHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCC--Ccc
Q 007547 427 PQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--RIH 504 (599)
Q Consensus 427 ~~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g--~~~ 504 (599)
+++.|.+|+...+++++|||.+||++++|+++++..+ |+++||+|||||+|..+++.++|+|+++++.+++| +.+
T Consensus 390 --~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~ 466 (688)
T 1tll_A 390 --GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVH 466 (688)
T ss_dssp --CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEE
T ss_pred --CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHhC-cccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcC
Confidence 7899999999999999999999999999999999999 99999999999999876899999999998877654 678
Q ss_pred cCchhHHHhhcCCCCCCCCceEEEEEeeCC-CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhh-cCCCCCCEEEEE
Q 007547 505 KGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFF 582 (599)
Q Consensus 505 ~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~-~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~-~g~~~g~~~Lf~ 582 (599)
.|+||+||+++++| +.|.|++|++ .|+||.++.+|+||||+||||||||||||++..+.+ .+...++++|||
T Consensus 467 ~G~~S~~L~~l~~G------d~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~ 540 (688)
T 1tll_A 467 HGVCSSWLNRIQAD------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVF 540 (688)
T ss_dssp ECHHHHHHTTCCTT------SEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEE
T ss_pred CCchhHHHHhCCCC------CEEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEE
Confidence 99999999999999 8999999766 999998888999999999999999999999987532 233568999999
Q ss_pred eccCCCcccchHHhhc
Q 007547 583 GCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 583 G~R~~~~D~ly~~El~ 598 (599)
|||+++.|++|++||+
T Consensus 541 G~R~~~~D~ly~dEL~ 556 (688)
T 1tll_A 541 GCRQSKIDHIYREETL 556 (688)
T ss_dssp EESCTTTTCTTHHHHH
T ss_pred EeccchhhhhHHHHHH
Confidence 9999987999999986
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=7.5e-69 Score=585.23 Aligned_cols=334 Identities=40% Similarity=0.733 Sum_probs=297.0
Q ss_pred ccCCceEEEEcCCc----ccccCCCCC-CCCCCCCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCC
Q 007547 258 AAIPEYRVMIHGPT----VTSSVDNYS-NMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGD 332 (599)
Q Consensus 258 ~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD 332 (599)
...++|+++.+++. ++.|+++.. ...++.++|+.+|||.|+|++|++|+. .++|+|+|||||+++++++|+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ge~~~~~~~~~~~~~~~~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD 99 (458)
T 3qfs_A 21 MSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGD 99 (458)
T ss_dssp ---CCEEEEECTTCCGGGCBSSCSSSTTTTTSCCSCCCSSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTC
T ss_pred cceeceEEEEccCccccccccCChhhcccccccCCCCCCCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCC
Confidence 35678999987654 356676542 344678899999999999999999997 467999999999999999999999
Q ss_pred eEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhC
Q 007547 333 HVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHA 412 (599)
Q Consensus 333 ~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a 412 (599)
||+|||.|+++.|++++++||+++|++|+++..++.. +.+.|||.|+|++++|++|+||+++|+|+||+.||.||
T Consensus 100 ~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~-----~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~a 174 (458)
T 3qfs_A 100 HVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEES-----NKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYA 174 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTC-----SCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGB
T ss_pred EEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCccc-----ccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHHc
Confidence 9999999999999999999999999999998765422 34679999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccCC--CChhHHHHHHHhcCCCHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEE
Q 007547 413 TEPSEAERLKFLSSP--QGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVT 490 (599)
Q Consensus 413 ~d~~ek~~L~~l~s~--~g~~~y~~~~~~~~~sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~ 490 (599)
+|+.+|++|++|++. +|+++|.+|+.++++|++|||++||++++|+++|++++ |+++||+|||||+|..+++.++|+
T Consensus 175 ~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps~~~p~~~ll~~l-p~l~pR~YSIsSsp~~~~~~i~lt 253 (458)
T 3qfs_A 175 SEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELL-PRLQARYYSIASSSKVHPNSVHIC 253 (458)
T ss_dssp CSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTCTTEEEEE
T ss_pred CCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHHhhC-CCCcceeEeeccCcccCCCEEEEE
Confidence 999999999999874 68999999999999999999999999999999999999 999999999999998778999999
Q ss_pred EEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhh
Q 007547 491 CALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ 570 (599)
Q Consensus 491 v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~ 570 (599)
|++++++++.|+.+.|+||+||+++.++++...+..|+|++|.|.|+||.++.+|+||||+||||||||||+|+|.++.+
T Consensus 254 V~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~ 333 (458)
T 3qfs_A 254 AVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQ 333 (458)
T ss_dssp EECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHh
Confidence 99999999889999999999999998874211112799999999999999888999999999999999999999986655
Q ss_pred cCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 571 DGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 571 ~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|...++++||||||++..|++|++||+
T Consensus 334 ~g~~~~~~~Lf~G~R~~~~D~ly~dEl~ 361 (458)
T 3qfs_A 334 QGKEVGETLLYYGCRRSDEDYLYREELA 361 (458)
T ss_dssp HTCCCCCEEEEEEESCTTTSCTTHHHHH
T ss_pred cCCCCCCEEEEEEeCCchHhhhHHHHHH
Confidence 5545689999999999866999999996
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=1.8e-64 Score=561.75 Aligned_cols=306 Identities=33% Similarity=0.564 Sum_probs=269.4
Q ss_pred CCCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCC--ccEEEE
Q 007547 285 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSL--ELLFSL 362 (599)
Q Consensus 285 ~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~--d~~~~l 362 (599)
...||+..+||.|+|++|++|+.++++|+|+||+||+++++++|+|||||+|||.|+++.|+++|++||+++ +++|.+
T Consensus 105 ~~~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~ 184 (539)
T 2qtl_A 105 QVSVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLL 184 (539)
T ss_dssp --------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEE
T ss_pred ccCCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999999986 578888
Q ss_pred ecCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCC
Q 007547 363 HTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQR 442 (599)
Q Consensus 363 ~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~ 442 (599)
+..++... .+...+.|||.|+|++++|++|+||+++|+|+||+.||.||+|+++|++|++|++++|+++|.+|+.++++
T Consensus 185 ~~~~~~~~-~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~ 263 (539)
T 2qtl_A 185 KIKADTKK-KGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACA 263 (539)
T ss_dssp EECTTCCC-TTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTC
T ss_pred eccccccC-CCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCC
Confidence 76654221 12356788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCC--CCcccCchhHHHhhc-----
Q 007547 443 SLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNA----- 515 (599)
Q Consensus 443 sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~--g~~~~G~~S~~L~~l----- 515 (599)
|++|||++||++++|+++|++.+ |+++||+|||||+|..+++.++|+|+++++++.+ ++.+.|+||+||+++
T Consensus 264 ~lldvL~~fps~~~p~~~ll~~l-p~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~ 342 (539)
T 2qtl_A 264 CLLDLLLAFPSCQPPLSLLLEHL-PKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVL 342 (539)
T ss_dssp CHHHHHHHSTTBCCCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC
T ss_pred CHHHHHHhCCCcCCCHHHHHHhC-cCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhc
Confidence 99999999999999999999999 9999999999999976689999999999885544 567899999999997
Q ss_pred ------CCCCCCCCce-------EEEEEeeCC-CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcC--CCCCCEE
Q 007547 516 ------IPLEGNGDCS-------WAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG--AQLGPAL 579 (599)
Q Consensus 516 ------~~g~~~~~~~-------~v~i~~~~~-~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g--~~~g~~~ 579 (599)
++| + .|+|++|.| .|+||.++.+||||||+||||||||||||+|.++.+++ ...++++
T Consensus 343 ~~~~~~~~G------d~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~ 416 (539)
T 2qtl_A 343 QPNIHASHE------DSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMW 416 (539)
T ss_dssp --------------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEE
T ss_pred cccccCCCC------CccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEE
Confidence 666 6 999999986 99999888899999999999999999999998765433 2468999
Q ss_pred EEEeccCCCcccchHHhhc
Q 007547 580 LFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 580 Lf~G~R~~~~D~ly~~El~ 598 (599)
||||||+++.|++|++||+
T Consensus 417 LffG~R~~~~D~ly~dEL~ 435 (539)
T 2qtl_A 417 LFFGCRHKDRDYLFRKELR 435 (539)
T ss_dssp EEEEESCTTTCCTTHHHHH
T ss_pred EEEEECCcchhhHHHHHHH
Confidence 9999999966999999996
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=4.7e-62 Score=524.03 Aligned_cols=289 Identities=33% Similarity=0.583 Sum_probs=257.1
Q ss_pred CCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCCCCCC
Q 007547 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTP 371 (599)
Q Consensus 292 ~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~ 371 (599)
.++|.|+|++|++|++++++|+|+|||||+++ +++|+|||||+|||.|+++.|+++|++||+++|+.|+++.....
T Consensus 4 ~~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~-~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~--- 79 (393)
T 4dql_A 4 HGAFSTNVVASKELQQPGSARSTRHLEIELPK-EASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEK--- 79 (393)
T ss_dssp -CCEEEEEEEEEECSCTTCSCCEEEEEEECCT-TCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC-------
T ss_pred CCcEEEEEEeEEEcCCCCCCceEEEEEEECCC-CCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCc---
Confidence 46789999999999999999999999999985 89999999999999999999999999999999998887653221
Q ss_pred CCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHhhC
Q 007547 372 RGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEF 451 (599)
Q Consensus 372 ~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dvL~~f 451 (599)
....|++.|+|++++|++ +||+++|+|++|+.||+||+|+.+|++|++|++. ++|.+|+..+++|++|||++|
T Consensus 80 ---~~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~f 152 (393)
T 4dql_A 80 ---LAHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKY 152 (393)
T ss_dssp ----------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHC
T ss_pred ---cccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhC
Confidence 235688999999999999 9999999999999999999999999999999753 379999999999999999999
Q ss_pred CCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCC-cccCchhHHHhhcCCCCCCCCceEEEEE
Q 007547 452 PSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (599)
Q Consensus 452 ps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~-~~~G~~S~~L~~l~~g~~~~~~~~v~i~ 530 (599)
|++++|+++|++++ |+++||+|||||+|..++++++|+|+++.+++..|+ .+.|+||+||+++++| +.|.++
T Consensus 153 ps~~~p~~~~l~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~G------d~v~v~ 225 (393)
T 4dql_A 153 PACEMKFSEFIALL-PSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEG------DTITCF 225 (393)
T ss_dssp TTCCCCHHHHHHTS-CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTT------CEEEEE
T ss_pred CCCCCCHHHHHHhC-CCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCc------CEEEEE
Confidence 99999999999999 999999999999998778999999999998877665 5779999999999999 899965
Q ss_pred e--eCCCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 531 I--RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 531 ~--~~~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+ |.|.|++|.++.+|+||||+||||||||||+|+|.++.++|...++++||||||++..|++|++||+
T Consensus 226 v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~ 295 (393)
T 4dql_A 226 ISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELE 295 (393)
T ss_dssp EECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHH
T ss_pred EEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHH
Confidence 4 5689999998889999999999999999999999876666656789999999999756999999996
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=5.5e-61 Score=522.49 Aligned_cols=301 Identities=36% Similarity=0.639 Sum_probs=269.0
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCC-CCccCCCCeEEEeccCCHHHHHHHHHHhCC--CCccEEEEec
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVENCDETVEEAGKLLGQ--SLELLFSLHT 364 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~-~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl--~~d~~~~l~~ 364 (599)
.|+.++||.|+|++|++|++++++|+|+|||||++++ +++|+|||||+|||.|+++.|+++|++||+ ++|++|+++.
T Consensus 24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~ 103 (435)
T 1f20_A 24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEM 103 (435)
T ss_dssp HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEE
T ss_pred ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEec
Confidence 4778999999999999999999999999999999876 799999999999999999999999999986 6789998875
Q ss_pred CCCCCCCCC----CCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhc
Q 007547 365 DNEDGTPRG----SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVAS 440 (599)
Q Consensus 365 ~~~~~~~~~----~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~ 440 (599)
.+++..+.+ ...+.+|| |+|++++|++|+||+++|+|+||+.||.||+|+++|++|++|++ ++++|.+|+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~ 180 (435)
T 1f20_A 104 LEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGK 180 (435)
T ss_dssp EEEESSSTTCEEEEEECCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHH
T ss_pred cccccCCCCccccccccCCCC-CccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhcc
Confidence 422111101 02356888 99999999999999999999999999999999999999999974 889999999999
Q ss_pred CCCHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCC--CcccCchhHHHhhcCCC
Q 007547 441 QRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG--RIHKGVCSTWMKNAIPL 518 (599)
Q Consensus 441 ~~sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g--~~~~G~~S~~L~~l~~g 518 (599)
+++++|||.+||++++|++++++.+ |+++||+|||||+|..+++.++|+|+++++.+++| +.+.|+||+||+++++|
T Consensus 181 ~~~i~~vl~~fps~~~p~~~l~~~l-p~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~G 259 (435)
T 1f20_A 181 NPTMVEVLEEFPSIQMPATLLLTQL-SLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQAD 259 (435)
T ss_dssp CCCHHHHHHHSTTBCBCHHHHHHHS-CBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTT
T ss_pred CCCHHHHHHhCCcCCCCHHHHHHhC-CCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCC
Confidence 9999999999999999999999999 99999999999999877899999999998877654 67889999999999999
Q ss_pred CCCCCceEEEEEeeCC-CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhh-cCCCCCCEEEEEeccCCCcccchHHh
Q 007547 519 EGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ-DGAQLGPALLFFGCRNRRMVRIFCYL 596 (599)
Q Consensus 519 ~~~~~~~~v~i~~~~~-~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~-~g~~~g~~~Lf~G~R~~~~D~ly~~E 596 (599)
+.|.|++|++ .|++|.++.+|+||||+||||||||||+|++.++.+ .+...++++||||||+++.|++|++|
T Consensus 260 ------d~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~E 333 (435)
T 1f20_A 260 ------DVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREE 333 (435)
T ss_dssp ------CEEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHH
T ss_pred ------CEEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHH
Confidence 8999999665 999998888999999999999999999999987421 23356899999999999879999999
Q ss_pred hc
Q 007547 597 LQ 598 (599)
Q Consensus 597 l~ 598 (599)
|+
T Consensus 334 l~ 335 (435)
T 1f20_A 334 TL 335 (435)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=1.4e-57 Score=486.68 Aligned_cols=274 Identities=27% Similarity=0.421 Sum_probs=252.5
Q ss_pred CCCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecC
Q 007547 286 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 365 (599)
Q Consensus 286 ~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~ 365 (599)
.++|+.++||.|+|++|++|+.++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.|++.
T Consensus 3 ~~~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~-- 80 (374)
T 1ddg_A 3 TSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE-- 80 (374)
T ss_dssp CCCCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET--
T ss_pred CCCCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC--
Confidence 356889999999999999999999999999999999988999999999999999999999999999999999998873
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHH
Q 007547 366 NEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLL 445 (599)
Q Consensus 366 ~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~ 445 (599)
+.|+|++++|++|+||+ +|+|+||+.||.||+|++ |++|+ ++++.|.+|+. +++++
T Consensus 81 ---------------~~~~tl~~~l~~~~di~-~p~~~~l~~la~~~~~~~----L~~l~--~~~~~~~~~~~--~~~~~ 136 (374)
T 1ddg_A 81 ---------------GKTLPLNEALQWHFELT-VNTANIVENYATLTRSET----LLPLV--GDKAKLQHYAA--TTPIV 136 (374)
T ss_dssp ---------------TEEEEHHHHHHHHBCCS-CCCHHHHHHHHHHHTCTT----TGGGT--TCTHHHHHHHH--HSCHH
T ss_pred ---------------CCCccHHHHHHhcccCC-CCCHHHHHHHHHHCCCHH----HHHHh--cChHHHHHHHc--CCCHH
Confidence 14899999999999999 899999999999999974 88886 58889999987 48999
Q ss_pred HHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCc
Q 007547 446 EVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDC 524 (599)
Q Consensus 446 dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~ 524 (599)
|+|.+||+ ++++++|+.+. ++++||+|||||+|..+++.++|+|+++.++++ |+.+.|+||+||++ +++|
T Consensus 137 ~vl~~~p~-~~~~Gq~v~l~-~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~G------ 207 (374)
T 1ddg_A 137 DMVRFSPA-QLDAEALINLL-RPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEE------ 207 (374)
T ss_dssp HHHHHSCC-CCCHHHHHHHS-CBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSS------
T ss_pred HHHHHCCC-CCCHHHHHhhc-cCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCC------
Confidence 99999999 99999999999 999999999999997768999999999988775 77789999999999 9999
Q ss_pred eEEEEEeeCC-CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 525 SWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 525 ~~v~i~~~~~-~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.|.|++|++ .|++|.++.+|+||||+||||||||||+|++... + ..++++||||||+++.|++|++||+
T Consensus 208 d~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~d~ly~~El~ 278 (374)
T 1ddg_A 208 GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD---E-APGKNWLFFGNPHFTEDFLYQVEWQ 278 (374)
T ss_dssp CEEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCHHHHCTTHHHHH
T ss_pred CEEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCCchhhhhHHHHHH
Confidence 8999999765 9999988889999999999999999999999873 3 4589999999999855999999986
No 9
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=287.54 Aligned_cols=162 Identities=25% Similarity=0.438 Sum_probs=148.9
Q ss_pred hhHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCC
Q 007547 74 DDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGE 153 (599)
Q Consensus 74 ~~~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~ 153 (599)
....+..+.+++++|+|||||||||++|++|++.+. . |+.++++++++++.++ +.+++.+||++||||+|+
T Consensus 31 ~l~~~~~~~~~kv~IlYgS~tGnte~~A~~La~~l~-~--g~~v~v~~l~~~~~~~------l~~~~~vI~~tsTyG~Ge 101 (219)
T 3hr4_A 31 MLMRKTMASRVRVTILFATETGKSEALAWDLGALFS-C--AFNPKVVCMDKYRLSC------LEEERLLLVVTSTFGNGD 101 (219)
T ss_dssp HHHHHHHHTSCEEEEEEECSSSHHHHHHHHHHHHHT-T--TSEEEEEEGGGCCGGG------GGTCSEEEEEEECBTTTB
T ss_pred HHHHHHHhcCCcEEEEEECCchHHHHHHHHHHHHHH-c--CCCeEEEEcccCCHhH------hccCCeEEEEEeccCCCc
Confidence 456666778999999999999999999999999984 5 7889999999999877 889999999999999999
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHH
Q 007547 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (599)
Q Consensus 154 ~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~ 233 (599)
+|+|+..|+++|..... .+++++|||||+||++|++||.+++.++++|+++||++++|++++|+..+.+++|++|.+
T Consensus 102 ~Pdna~~F~~~L~~~~~---~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~~~e~~~~~W~~ 178 (219)
T 3hr4_A 102 CPGNGEKLKKSLFMLKE---LNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAV 178 (219)
T ss_dssp CCGGGHHHHHHHHHCCC---CSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcch---hhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCCCcHHHHHHHHH
Confidence 99999999999987542 389999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHhccCCC
Q 007547 234 LVWPELDQLLRDED 247 (599)
Q Consensus 234 ~l~~~L~~~~~~~~ 247 (599)
.+|++|++.+..+.
T Consensus 179 ~l~~~l~~~~~~~~ 192 (219)
T 3hr4_A 179 QTFKAACETFDVRG 192 (219)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999886543
No 10
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.95 E-value=3.9e-28 Score=235.66 Aligned_cols=147 Identities=30% Similarity=0.630 Sum_probs=131.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
.+++++|+|+|+|||||++|+.|++.+.+. |+.+++++++++. ++ +.+++.+||++||| +|++|+++..|
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~--g~~v~v~~l~~~~-~~------l~~~d~vi~g~~Ty-~G~~p~~~~~f 89 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSK--GFAPQVATLDSHA-GN------LPREGAVLIVTASY-NGHPPDNAKQF 89 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTT--TCCCEEEEGGGST-TC------CCSSSEEEEEECCB-TTBCCTTTHHH
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhC--CCceEEeeHHHhh-hh------hhhCCeEEEEEeec-CCCcCHHHHHH
Confidence 578899999999999999999999999877 8889999998853 25 88899999999999 99999999999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELD 240 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~ 240 (599)
+++|..... ..|++++|+|||+||++| +|||.+++.++++|+++|++++.+.+++|+..+.++++.+|.+.+|++|.
T Consensus 90 l~~L~~~~~--~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 90 VDWLDQASA--DEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp HHHHHTCCS--SCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccc--hhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecCCChHHHHHHHHHHHHHHhc
Confidence 999986421 238899999999999999 69999999999999999999999999999844667779999999999996
No 11
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.95 E-value=2.4e-27 Score=224.93 Aligned_cols=150 Identities=31% Similarity=0.493 Sum_probs=133.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
.+++++|+|+|+||||+++|+.|++.+.+. |+.++++++++++..+ +.+++.+||++||||.|++|+++..|
T Consensus 8 ~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~ii~g~pt~g~G~~p~~~~~f 79 (167)
T 1ykg_A 8 EMPGITIISASQTGNARRVAEALRDDLLAA--KLNVKLVNAGDYKFKQ------IASEKLLIVVTSTQGEGEPPEEAVAL 79 (167)
T ss_dssp ----CEEEEECSSSHHHHHHHHHHHHHHHH--TCCCEEEEGGGCCGGG------GGGCSEEEEEEECBGGGBCCGGGHHH
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHHC--CCceEEeehhhCCHHH------hccCCeEEEEEcccCCCcCChhHHHH
Confidence 367899999999999999999999999988 8889999999888776 88899999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~ 241 (599)
+++|.... ...+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+++|+ +.++++.+|.+++++.|..
T Consensus 80 ~~~l~~~~--~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d~--~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 80 HKFLFSKK--APKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV--EYQAAASEWRARVVDALKS 155 (167)
T ss_dssp HHHHTSTT--CCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECT--TCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcc--ccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecCC--CcHHHHHHHHHHHHHHHHh
Confidence 99998631 1138899999999999999999999999999999999999999999883 5789999999999999976
Q ss_pred hc
Q 007547 242 LL 243 (599)
Q Consensus 242 ~~ 243 (599)
.+
T Consensus 156 ~~ 157 (167)
T 1ykg_A 156 RA 157 (167)
T ss_dssp CC
T ss_pred hc
Confidence 44
No 12
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.94 E-value=1.9e-27 Score=220.50 Aligned_cols=144 Identities=24% Similarity=0.315 Sum_probs=128.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|++++|+|+|+||||+++|+.|++.+.+. |+.++++++. +..+ +.+++.+||++||||.|++|+++..|+
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~--~~~~------l~~~d~vi~g~pt~g~g~~p~~~~~f~ 70 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEA--GFTTETLHGP--LLED------LPASGIWLVISSTHGAGDIPDNLSPFY 70 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHT--TCCEEEECCT--TSCS------SCSEEEEEEECCTTTTCCTTSSCHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHC--CCceEEecCC--CHHH------cccCCeEEEEECccCCCCCChhHHHHH
Confidence 46899999999999999999999999887 7888888764 3444 788999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L 239 (599)
++|..... .+++++|+|||+||++|+|||.+++.++++|+++|++++.+.+++|..+ +.++++.+|.+++++.|
T Consensus 71 ~~l~~~~~---~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 71 EALQEQKP---DLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp HHHHHHCC---CTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhcc---ccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 99976421 2889999999999999999999999999999999999999999998765 67899999999998876
No 13
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.93 E-value=1e-25 Score=208.67 Aligned_cols=143 Identities=22% Similarity=0.309 Sum_probs=129.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc-cCCeEEEEeecCCC--CCCChhHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK-KETLAFFMVATYGD--GEPTDNAA 159 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~-~~~~vif~~sTyG~--G~~p~na~ 159 (599)
|++++|+|+|+||||+++|+.|++.+.+. |++++++++++++..+ +. +++.+||++||||. |++|+++.
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~~d~ii~g~pty~~~~G~~p~~~~ 72 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAG--GHEVTLLNAADASAEN------LADGYDAVLFGCSAWGMEDLEMQDDFL 72 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTT--TCEEEEEETTTBCCTT------TTTTCSEEEEEECEECSSSCEECHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhC--CCeEEEEehhhCCHhH------hcccCCEEEEEecccCCCCCCCcHHHH
Confidence 47899999999999999999999999988 8999999999998877 88 99999999999998 99999999
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC-CcHHHHHHHHHHHHHH
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPE 238 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~-~~e~~~~~W~~~l~~~ 238 (599)
.|+++|.... +++++++|||+||++|+|||.+++.+++.|+++|++++.+...++..+ +..+.+++|.+++++.
T Consensus 73 ~fl~~l~~~~-----l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 73 SLFEEFDRIG-----LAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASNDPEAVASFAEDVLKQ 147 (148)
T ss_dssp HHHTTGGGTC-----CTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHhhccC-----CCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcchHHHHHHHHHHHHHhh
Confidence 9999998643 889999999999999999999999999999999999999888877653 2678888998887654
No 14
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.91 E-value=3.3e-24 Score=223.80 Aligned_cols=210 Identities=19% Similarity=0.298 Sum_probs=148.9
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~ 367 (599)
-|...+|+.++|+.+.+|+.++....++||+|+.++ .+.|.+|+.++|.|+..+.. +. .+.
T Consensus 9 ~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~GQ~~~i~~~~~~~~----------~~--------~~~ 69 (316)
T 3jqq_A 9 LYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG-LFKYLEGHTCGIIPYYNELD----------NN--------PNN 69 (316)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT-CCCCCTTCEEEECTTCC--------------------------
T ss_pred eecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC-CcceecCcEeEEECCCcccc----------cc--------ccc
Confidence 367889999999999999988888899999999965 69999999999999876432 00 000
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHH
Q 007547 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (599)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dv 447 (599)
+.+-|.-+- -++.+.+ +.+++
T Consensus 70 ---------~~~~~~~~~---~~~~~~~---------------------------------------------h~~~~-- 90 (316)
T 3jqq_A 70 ---------QINKDHNII---NTTNHTN---------------------------------------------HNNIA-- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------ccccccccc---ccccccc---------------------------------------------ccccc--
Confidence 000000000 0000000 00000
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCC---CCCcccCchhHHHhhcCCCCCCCCc
Q 007547 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTP---TGRIHKGVCSTWMKNAIPLEGNGDC 524 (599)
Q Consensus 448 L~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~---~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (599)
. ...- +...+|+|||+|+|.. +.++|+|+++.|..+ .++.+.|.||+||+++++|
T Consensus 91 -------~------~~~~-g~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~G------ 148 (316)
T 3jqq_A 91 -------L------SHIK-KQRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKIN------ 148 (316)
T ss_dssp --------------------CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCTT------
T ss_pred -------c------ccCC-CcccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCC------
Confidence 0 0011 5678999999999864 689999998765432 2345689999999999999
Q ss_pred eEEEEEeeCCCCcCCCC---CCCcEEEEeCCCChHHHHHHHHHHHHHhhc------CCCCCCEEEEEeccCCCcccchHH
Q 007547 525 SWAPIFIRPSNFKLPAN---PSVPIIMVGPGTGLAPFRGFLQERMALKQD------GAQLGPALLFFGCRNRRMVRIFCY 595 (599)
Q Consensus 525 ~~v~i~~~~~~F~Lp~~---~~~piImIg~GTGIAPfrsflqer~~~~~~------g~~~g~~~Lf~G~R~~~~D~ly~~ 595 (599)
+.|.|.+|.|.|.+|.+ ..+|+||||+|||||||++||+++...... +...++++||||||+++ |++|.+
T Consensus 149 d~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~ 227 (316)
T 3jqq_A 149 DDIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNED-SILYLN 227 (316)
T ss_dssp CEEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGG-GCTTHH
T ss_pred CEEEEEecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHH-HhhcHH
Confidence 89999999999999976 378999999999999999999999863211 11347999999999998 999999
Q ss_pred hhc
Q 007547 596 LLQ 598 (599)
Q Consensus 596 El~ 598 (599)
||+
T Consensus 228 eL~ 230 (316)
T 3jqq_A 228 ELE 230 (316)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
No 15
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=99.91 E-value=2.1e-23 Score=215.97 Aligned_cols=184 Identities=24% Similarity=0.351 Sum_probs=150.3
Q ss_pred CCCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCC
Q 007547 287 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 366 (599)
Q Consensus 287 ~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~ 366 (599)
..|+..+|+.++|+++++|+..+++++++|++|++++..+.|+||+++.|+++|..
T Consensus 14 ~~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------ 69 (304)
T 2bmw_A 14 NLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------ 69 (304)
T ss_dssp CSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC------------------------
T ss_pred cccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc------------------------
Confidence 35667889999999999999888889999999999876789999999999887631
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHH
Q 007547 367 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 446 (599)
Q Consensus 367 ~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~d 446 (599)
. .|
T Consensus 70 ~------------------------------------------------------------~g----------------- 72 (304)
T 2bmw_A 70 K------------------------------------------------------------NG----------------- 72 (304)
T ss_dssp T------------------------------------------------------------TS-----------------
T ss_pred c------------------------------------------------------------cC-----------------
Confidence 0 00
Q ss_pred HHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC---CCCEEEEEEEEEEecCCC-CCcccCchhHHHhhcCCCCCCC
Q 007547 447 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-GRIHKGVCSTWMKNAIPLEGNG 522 (599)
Q Consensus 447 vL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~---~~~~i~l~v~~v~~~~~~-g~~~~G~~S~~L~~l~~g~~~~ 522 (599)
.+.++|+|||+|+|.. .++.++|+|+.+.+.++. |+.+.|.||+||+++++|
T Consensus 73 --------------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G---- 128 (304)
T 2bmw_A 73 --------------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPG---- 128 (304)
T ss_dssp --------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTT----
T ss_pred --------------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCC----
Confidence 1247899999999853 368999999987776543 445689999999999999
Q ss_pred CceEEEEEeeCCCC-cCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhc--C---CCCCCEEEEEeccCCCcccchHHh
Q 007547 523 DCSWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--G---AQLGPALLFFGCRNRRMVRIFCYL 596 (599)
Q Consensus 523 ~~~~v~i~~~~~~F-~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~--g---~~~g~~~Lf~G~R~~~~D~ly~~E 596 (599)
+.|.|.+|.|.| .+|.+..+|+||||+|||||||++||+++....++ + ...++++||||||+.+ |++|++|
T Consensus 129 --d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~e 205 (304)
T 2bmw_A 129 --SEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTP-NILYKEE 205 (304)
T ss_dssp --CEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGG-GCTTHHH
T ss_pred --CEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChH-hcchHHH
Confidence 899999999965 56766678999999999999999999998753211 1 0247899999999987 9999999
Q ss_pred hc
Q 007547 597 LQ 598 (599)
Q Consensus 597 l~ 598 (599)
|+
T Consensus 206 l~ 207 (304)
T 2bmw_A 206 LE 207 (304)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 16
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.90 E-value=1.4e-23 Score=193.94 Aligned_cols=142 Identities=24% Similarity=0.300 Sum_probs=127.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhcc-CCeEEEEeecCCCCC--CChhHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGE--PTDNAAR 160 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~-~~~vif~~sTyG~G~--~p~na~~ 160 (599)
|+++|+|+|+||||+++|+.|++.+.+. |++++++++++.+..+ +.+ ++.+||++||||.|. +|+++..
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~--g~~v~~~~~~~~~~~~------l~~~~d~ii~~~p~y~~g~~~~p~~~~~ 72 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADA--GYEVDSRDAASVEAGG------LFEGFDLVLLGCSTWGDDSIELQDDFIP 72 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHH--TCEEEEEEGGGCCSTT------TTTTCSEEEEEECEECSSSCEECTTTHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhc--CCeeEEEehhhCCHHH------hcCcCCEEEEEeCCCCCCCcCCChhHHH
Confidence 5899999999999999999999999988 8899999999988776 888 999999999999999 9999999
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCC-cHHHHHHHHHHHHHH
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQC-IEDDFTAWRELVWPE 238 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~-~e~~~~~W~~~l~~~ 238 (599)
|++++.... ++++++++||+||++|++||.+.+.+++.|+++|++++.+...+|..++ .++.+.+|.+++++.
T Consensus 73 fl~~l~~~~-----l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 146 (147)
T 1f4p_A 73 LFDSLEETG-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGA 146 (147)
T ss_dssp HHHTGGGSC-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHhcc-----cCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchhHHHHHHHHHHHHHhh
Confidence 999997643 8899999999999999999999999999999999999988777776543 678899999888653
No 17
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=99.90 E-value=3.3e-23 Score=215.60 Aligned_cols=182 Identities=27% Similarity=0.407 Sum_probs=149.6
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~ 367 (599)
.++..+|+.++|+++++++..++++++++++|+.++ .+.|+||+|+.|+++|..
T Consensus 31 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------- 84 (314)
T 1fnb_A 31 KFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED------------------------- 84 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC-------------------------
T ss_pred ccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCCCC-------------------------
Confidence 466778899999999999987777899999999886 489999999999876520
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHH
Q 007547 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (599)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dv 447 (599)
.+|
T Consensus 85 -----------------------------------------------------------~~g------------------ 87 (314)
T 1fnb_A 85 -----------------------------------------------------------KNG------------------ 87 (314)
T ss_dssp -----------------------------------------------------------TTS------------------
T ss_pred -----------------------------------------------------------cCC------------------
Confidence 000
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC---CCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCc
Q 007547 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 524 (599)
Q Consensus 448 L~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~---~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (599)
.++++|+|||+|+|.. .++.++|+|+.+.|.++.|+.+.|.||+||+++++|
T Consensus 88 -------------------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~G------ 142 (314)
T 1fnb_A 88 -------------------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPG------ 142 (314)
T ss_dssp -------------------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTT------
T ss_pred -------------------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCC------
Confidence 1247899999999863 358999999988777767777789999999999999
Q ss_pred eEEEEEeeCCCC-cCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcC-CCCCCEEEEEeccCCCcccchHHhhc
Q 007547 525 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 525 ~~v~i~~~~~~F-~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g-~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.|.|.+|.|+| .+|.+..+|+||||+|||||||++||+++......+ ...++++||||||+++ |++|++||+
T Consensus 143 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~el~ 217 (314)
T 1fnb_A 143 AEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFE 217 (314)
T ss_dssp CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGG-GCCSHHHHH
T ss_pred CEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHH-HhhhHHHHH
Confidence 899999999976 566556789999999999999999999987521111 0147899999999987 999999985
No 18
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=99.89 E-value=1.1e-22 Score=211.46 Aligned_cols=182 Identities=25% Similarity=0.399 Sum_probs=149.9
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~ 367 (599)
.|+...|+.++|+.+++++..+...+++|++|+.++ .+.|+||.|+.|+++...
T Consensus 27 ~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------- 80 (310)
T 3vo2_A 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG-EIPYREGQSIGIIADGED------------------------- 80 (310)
T ss_dssp SBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC-------------------------
T ss_pred eecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCC-CCcccCCCEEEEECCCcC-------------------------
Confidence 477789999999999999977666789999999764 789999999999664310
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHH
Q 007547 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (599)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dv 447 (599)
..|
T Consensus 81 -----------------------------------------------------------~~g------------------ 83 (310)
T 3vo2_A 81 -----------------------------------------------------------KNG------------------ 83 (310)
T ss_dssp -----------------------------------------------------------TTS------------------
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 001
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC---CCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCc
Q 007547 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 524 (599)
Q Consensus 448 L~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~---~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (599)
-++++|+|||+|+|.. .++.++|+|+++.+.++.|+.+.|.||+||+++++|
T Consensus 84 -------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G------ 138 (310)
T 3vo2_A 84 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 138 (310)
T ss_dssp -------------------CBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTT------
T ss_pred -------------------CcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCC------
Confidence 2247899999999863 368999999998888877888899999999999999
Q ss_pred eEEEEEeeCCCC-cCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcC-CCCCCEEEEEeccCCCcccchHHhhc
Q 007547 525 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 525 ~~v~i~~~~~~F-~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g-~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.|.|.+|.|.| .+|.+..+|+||||+|||||||++||+++......+ ...++++||||||+.+ |++|.+||+
T Consensus 139 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~ 213 (310)
T 3vo2_A 139 ADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSD-SLLYKEELE 213 (310)
T ss_dssp CEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGG-GCCSHHHHH
T ss_pred CEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChh-hcccHHHHH
Confidence 899999999965 567667799999999999999999999988532111 1137899999999988 999999985
No 19
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.88 E-value=5.2e-22 Score=206.47 Aligned_cols=189 Identities=23% Similarity=0.276 Sum_probs=146.9
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCc---------eEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCcc
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRS---------CIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLEL 358 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~---------~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~ 358 (599)
.|...+|+.++|+.+++|+...++++ +++++|+.++..+.|+||+++.|+++|....
T Consensus 15 ~~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~-------------- 80 (314)
T 2rc5_A 15 LFKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPE-------------- 80 (314)
T ss_dssp SBBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHH--------------
T ss_pred CCCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccc--------------
Confidence 35567889999999999998766666 9999999987568999999999998774210
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHH
Q 007547 359 LFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVV 438 (599)
Q Consensus 359 ~~~l~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~ 438 (599)
+. | ..+
T Consensus 81 ----------g~------------~--------------------------------------~~~-------------- 86 (314)
T 2rc5_A 81 ----------KK------------A--------------------------------------KGL-------------- 86 (314)
T ss_dssp ----------HH------------H--------------------------------------TTC--------------
T ss_pred ----------cC------------c--------------------------------------cch--------------
Confidence 00 0 001
Q ss_pred hcCCCHHHHHhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC---CCCEEEEEEEEEEecCCCCCc-ccCchhHHHhh
Q 007547 439 ASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRI-HKGVCSTWMKN 514 (599)
Q Consensus 439 ~~~~sl~dvL~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~---~~~~i~l~v~~v~~~~~~g~~-~~G~~S~~L~~ 514 (599)
.+| ++++|+|||+|+|.. .++.++|+|+++.+.++.|+. +.|.+|+||++
T Consensus 87 ----------~~~----------------~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~ 140 (314)
T 2rc5_A 87 ----------ADV----------------GYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCD 140 (314)
T ss_dssp ----------SCC----------------BCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHT
T ss_pred ----------hhc----------------CCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhc
Confidence 011 157899999999852 368999999987666555554 57999999999
Q ss_pred cCCCCCCCCceEEEEEeeCCCCc-CCC-CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccc
Q 007547 515 AIPLEGNGDCSWAPIFIRPSNFK-LPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRI 592 (599)
Q Consensus 515 l~~g~~~~~~~~v~i~~~~~~F~-Lp~-~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~l 592 (599)
+++| +.|.|.+|.|.|. +|. +..+|+||||+|||||||++|++++..... ....++++||||||+++ |++
T Consensus 141 l~~G------d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~-~~~~~~v~l~~g~r~~~-d~~ 212 (314)
T 2rc5_A 141 LKPG------DEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKL-IKFTGNITLVYGAPYSD-ELV 212 (314)
T ss_dssp CCTT------CEEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCS-SCBCSCEEEEEEESSGG-GSC
T ss_pred CCCc------CEEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcc-cCCCCcEEEEEEeCCHH-HHh
Confidence 9999 8999999999764 554 457899999999999999999999875211 01247899999999998 999
Q ss_pred hHHhhc
Q 007547 593 FCYLLQ 598 (599)
Q Consensus 593 y~~El~ 598 (599)
|++||+
T Consensus 213 ~~~el~ 218 (314)
T 2rc5_A 213 MMDYLK 218 (314)
T ss_dssp SHHHHH
T ss_pred HHHHHH
Confidence 999985
No 20
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=99.87 E-value=1.3e-21 Score=210.66 Aligned_cols=184 Identities=24% Similarity=0.330 Sum_probs=148.1
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~ 367 (599)
.|...+|+.++|+++++++...++++++||+|++++..+.|+||+|+.|++++..
T Consensus 116 ~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------- 170 (402)
T 2b5o_A 116 IYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------- 170 (402)
T ss_dssp SSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE-------------------------
T ss_pred cccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC-------------------------
Confidence 3667789999999999999877788999999999865699999999999876520
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHH
Q 007547 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (599)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dv 447 (599)
.+|
T Consensus 171 -----------------------------------------------------------~~g------------------ 173 (402)
T 2b5o_A 171 -----------------------------------------------------------KNG------------------ 173 (402)
T ss_dssp -----------------------------------------------------------TTT------------------
T ss_pred -----------------------------------------------------------cCC------------------
Confidence 000
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC---CCCEEEEEEEEEEecCCC-CCcccCchhHHHhhcCCCCCCCC
Q 007547 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-GRIHKGVCSTWMKNAIPLEGNGD 523 (599)
Q Consensus 448 L~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~---~~~~i~l~v~~v~~~~~~-g~~~~G~~S~~L~~l~~g~~~~~ 523 (599)
.++++|+|||+|+|.. .++.++|+|+++.|.++. ++...|.||+||+++++|.
T Consensus 174 -------------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~---- 230 (402)
T 2b5o_A 174 -------------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGT---- 230 (402)
T ss_dssp -------------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTC----
T ss_pred -------------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCC----
Confidence 1247899999999863 258999999987776543 5556899999999988871
Q ss_pred ceEEEEEeeCCCC-cCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcC-CCCCCEEEEEeccCCCcccchHHhhc
Q 007547 524 CSWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 524 ~~~v~i~~~~~~F-~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g-~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+.|.|.+|.|.| .+|.+..+|+||||+|||||||++||+++......+ ...++++||||||+.+ |++|++||+
T Consensus 231 -d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~-d~~~~~eL~ 305 (402)
T 2b5o_A 231 -DDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA-NILYKDDFE 305 (402)
T ss_dssp -CCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGG-GCTTHHHHH
T ss_pred -ceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHH-HhHHHHHHH
Confidence 489999999965 677666799999999999999999999987521100 0247899999999987 999999986
No 21
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.86 E-value=1.8e-22 Score=193.74 Aligned_cols=146 Identities=21% Similarity=0.416 Sum_probs=124.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCC-------
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT------- 155 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p------- 155 (599)
|++++|+|+|+||||+++|+.|++.+.+. +.++++++++.+..+ +.+++.+||++||||.|++|
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~---~~v~~~~~~~~~~~~------l~~~d~ii~g~pty~~G~~pg~~~~~~ 71 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE---VMAKPLNVNRADVAD------FMAYDFLILGTPTLGDGQLPGLSANAA 71 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT---TBCCCEEGGGCCHHH------HHHCSEEEEEEECBTTTBCSSGGGTCS
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc---CceEEEEcccCCHHH------HhhCCeEEEEEeeCCCCCCCccccccc
Confidence 46899999999999999999999988642 346778888876655 88899999999999999999
Q ss_pred -hhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcc-h-hHHHHHHHHHHHHHHHCCCeEEecc-----------------
Q 007547 156 -DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL----------------- 215 (599)
Q Consensus 156 -~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~----------------- 215 (599)
+++..|+++|.... ++++++++||+|+++ | ++||.+.+.+++.|+++|++++.+.
T Consensus 72 ~~~~~~f~~~l~~~~-----l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~ 146 (182)
T 2wc1_A 72 SESWEEFLPRIADQD-----FSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGE 146 (182)
T ss_dssp SCCHHHHGGGGTTCC-----CTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTE
T ss_pred hhHHHHHHHHhhhcc-----CCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCc
Confidence 99999999987643 889999999999998 8 5899999999999999999998863
Q ss_pred --eee-cCCC---CcHHHHHHHHHHHHHHHHHh
Q 007547 216 --GLG-DDDQ---CIEDDFTAWRELVWPELDQL 242 (599)
Q Consensus 216 --g~~-D~~~---~~e~~~~~W~~~l~~~L~~~ 242 (599)
|++ |..+ ..++++++|.+++|++|...
T Consensus 147 ~~gl~~d~~~~~~~~~~~~~~w~~~l~~~l~~~ 179 (182)
T 2wc1_A 147 FLGLALDQDNQAALTPERLKGWLSLIAADFGLV 179 (182)
T ss_dssp ESSEEECTTTCGGGHHHHHHHHHHHTHHHHTCC
T ss_pred eeeeeccCCCCccccHHHHHHHHHHHHHHHhcc
Confidence 665 3332 25889999999999988653
No 22
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.86 E-value=3.2e-22 Score=191.66 Aligned_cols=143 Identities=20% Similarity=0.364 Sum_probs=122.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCC--------
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-------- 155 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p-------- 155 (599)
++++|+|+|+||||+++|+.|++.+.. ++.++++++++.+.++ +.+++.+||++||||.|++|
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~---~~~v~~~~~~~~~~~~------l~~~d~iilg~pt~~~G~~pg~~~~~~~ 71 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD---ETMSDALNVNRVSAED------FAQYQFLILGTPTLGEGELPGLSSDAEN 71 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT---TTBCCCEEGGGCCHHH------HHTCSEEEEEEECBTTTBCSSGGGTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC---CCceEEEEhhhCCHHH------HhcCCEEEEEeccCCCCcCCcccccccc
Confidence 479999999999999999999999863 3457788888876655 88999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcc-hh-HHHHHHHHHHHHHHHCCCeEEecc------------------
Q 007547 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVPL------------------ 215 (599)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~i~~~------------------ 215 (599)
+++..|+++|.... ++++++++||+||+. |+ +||.+.+.+++.|+++|++++.+.
T Consensus 72 ~~~~~fl~~l~~~~-----l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f 146 (179)
T 1yob_A 72 ESWEEFLPKIEGLD-----FSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKF 146 (179)
T ss_dssp CCHHHHHHHHTTCC-----CTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSB
T ss_pred hHHHHHHHHhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCce
Confidence 99999999997643 889999999999998 95 699999999999999999998764
Q ss_pred -ee-ecCCC---CcHHHHHHHHHHHHHHHH
Q 007547 216 -GL-GDDDQ---CIEDDFTAWRELVWPELD 240 (599)
Q Consensus 216 -g~-~D~~~---~~e~~~~~W~~~l~~~L~ 240 (599)
|+ .|.++ ..++++++|.+++++.|.
T Consensus 147 ~gl~~d~~~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 147 VGLALDLDNQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHHGGGGT
T ss_pred eccccCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 54 34332 468999999999887654
No 23
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.86 E-value=2e-21 Score=185.06 Aligned_cols=140 Identities=27% Similarity=0.428 Sum_probs=119.5
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCC-CCCchHHHhhhccCCeEEEEeecCCCCCC----ChhHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETLAFFMVATYGDGEP----TDNAA 159 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~----p~na~ 159 (599)
+++|+|+|+||||+++|+.|++.+.+. .+++++++++ +..+ +.+++.+||++||||.|++ |+++.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~----~~~~~~~~~~~~~~~------l~~~d~ii~g~pt~~~G~~~~~~p~~~~ 70 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK----ADAPIDVDDVTDPQA------LKDYDLLFLGAPTWNTGADTERSGTSWD 70 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG----BCCCEEGGGCSCGGG------GGGCSEEEEEEECCSTTCSSCCSCSTHH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC----CcEEEehhhcCChhH------HccCCEEEEEEeecCCCCcCccCcHHHH
Confidence 589999999999999999999999754 3667888887 6666 8899999999999999999 99999
Q ss_pred HHH-HHHhcCCCCCCCCCCcEEEEEeecCcc-h-hHHHHHHHHHHHHHHHCCCeEEecc-------------------ee
Q 007547 160 RFY-KWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL-------------------GL 217 (599)
Q Consensus 160 ~F~-~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~-------------------g~ 217 (599)
.|+ +.|.... ++++++++||+||+. | +|||.+.+.+++.|+++|++++.+. ++
T Consensus 71 ~fl~~~l~~~~-----l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l 145 (173)
T 2fcr_A 71 EFLYDKLPEVD-----MKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGL 145 (173)
T ss_dssp HHHHHTGGGCC-----CTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSE
T ss_pred HHHHhhccccc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeee
Confidence 999 8887644 889999999999999 8 6999999999999999999998762 22
Q ss_pred -ecC--C-CCcHHHHHHHHHHHHHHH
Q 007547 218 -GDD--D-QCIEDDFTAWRELVWPEL 239 (599)
Q Consensus 218 -~D~--~-~~~e~~~~~W~~~l~~~L 239 (599)
.|. . +..++.+++|.+++++.|
T Consensus 146 ~~~~~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 146 PLDMVNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp EEETTTCSSCHHHHHHHHHHHHHHHH
T ss_pred eecCCCCccccHHHHHHHHHHHHHHh
Confidence 222 2 246889999999998776
No 24
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.86 E-value=3.4e-22 Score=188.50 Aligned_cols=138 Identities=23% Similarity=0.405 Sum_probs=115.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|++++|+|+|+||||+++|+.|++.+ |. ++++++++++..+ +.+++.+||++||||.|++|+++..|+
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l-----g~-~~~~~~~~~~~~~------l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI-----GN-AEVVDVAKASKEQ------FNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH-----CS-EEEEEGGGCCHHH------HTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc-----CC-cEEEecccCCHhH------HhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 46899999999999999999999988 34 8889998887666 889999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcc-hhH-HHHHHHHHHHHHHHCCCeEEecc-------------------eeecC-
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQ-YEH-FNKIGIVLDEELCKQGGARLVPL-------------------GLGDD- 220 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y~~-f~~~~k~ld~~L~~lGa~~i~~~-------------------g~~D~- 220 (599)
++|.... +++++++|||+||+. |+| ||.+++.++++|++ ++++.+. +...+
T Consensus 69 ~~l~~~~-----l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~ 141 (164)
T 2bmv_A 69 GTLEASD-----FANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDE 141 (164)
T ss_dssp TTCCTHH-----HHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECT
T ss_pred HHHhhhh-----cCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCC
Confidence 9886532 789999999999995 974 99999999999988 8877763 34332
Q ss_pred CC---CcHHHHHHHHHHHHHHH
Q 007547 221 DQ---CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 221 ~~---~~e~~~~~W~~~l~~~L 239 (599)
.+ ..++++++|.+++++.|
T Consensus 142 ~~~~~~~~~~~~~w~~~l~~~l 163 (164)
T 2bmv_A 142 DNQDDLTDERISKWVEQVKGSF 163 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTTTC
T ss_pred CCccccCHHHHHHHHHHHHHhh
Confidence 22 35889999999886543
No 25
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.85 E-value=1.4e-21 Score=186.62 Aligned_cols=143 Identities=21% Similarity=0.371 Sum_probs=122.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
|+++|+|+|+||||+++|+.|++.+... .+++.++++.+..+ +.+++++||++|||+.|++|+++..|++
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~----~v~i~~~~~~~~~~------l~~~d~ii~g~pt~~~G~~p~~~~~f~~ 70 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD----VADVHDIAKSSKED------LEAYDILLLGIPTWYYGEAQCDWDDFFP 70 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEEGGGCCHHH------HHTCSEEEEECCEETTTEECHHHHHHHH
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC----ceEEEEcccCChhH------hhhCCEEEEEEeecCCCcChHHHHHHHh
Confidence 5799999999999999999999999753 37788888776555 8899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcc-h-hHHHHHHHHHHHHHHHCCCeEEecc--------------------ee-ecC
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL--------------------GL-GDD 220 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~i~~~--------------------g~-~D~ 220 (599)
+|.... ++|+++++||+||+. | ++||.+.+.+.+.|++.|++++... ++ .|.
T Consensus 71 ~l~~~~-----l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~ 145 (175)
T 1ag9_A 71 TLEEID-----FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDE 145 (175)
T ss_dssp HHTTCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECT
T ss_pred hhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCC
Confidence 998643 889999999999986 8 7899999999999999999988742 22 232
Q ss_pred CC---CcHHHHHHHHHHHHHHHHH
Q 007547 221 DQ---CIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 221 ~~---~~e~~~~~W~~~l~~~L~~ 241 (599)
++ ..++++.+|.+++++.|..
T Consensus 146 ~~~~~~~~~~i~~w~~~i~~~~~~ 169 (175)
T 1ag9_A 146 DRQPELTAERVEKWVKQISEELHL 169 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCcccccHHHHHHHHHHHHHHhhh
Confidence 22 3578899999999998865
No 26
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.85 E-value=9.5e-21 Score=179.08 Aligned_cols=142 Identities=25% Similarity=0.429 Sum_probs=122.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
|+++|+|+|+||||+++|+.|++.+.+. .++++++++++.++ +.+++.+||++||||.|.+|+++..|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~----~v~~~~~~~~~~~~------l~~~d~ii~g~p~y~~g~~p~~~~~fl~ 71 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND----VVTLHDVSQAEVTD------LNDYQYLIIGCPTLNIGELQSDWEGLYS 71 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT----TEEEEETTTCCGGG------GGGCSEEEEEEEEETTTEECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC----CcEEEEcccCCHHH------HhhCCEEEEEEeeCCCCcCCHHHHHHHH
Confidence 6899999999999999999999999753 48899999988776 8899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcc-hh-HHHHHHHHHHHHHHHCCCeEEecc-------------------ee-ecCC
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVPL-------------------GL-GDDD 221 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~i~~~-------------------g~-~D~~ 221 (599)
+|.... ++++++++||+|++. |+ |||.+.+.+++.|+++|++.+... ++ .+..
T Consensus 72 ~l~~~~-----l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~ 146 (169)
T 1obo_A 72 ELDDVD-----FNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDED 146 (169)
T ss_dssp TGGGCC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred HhhhcC-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCC
Confidence 998644 899999999999984 96 899999999999999999988652 22 1221
Q ss_pred ---CCcHHHHHHHHHHHHHHHH
Q 007547 222 ---QCIEDDFTAWRELVWPELD 240 (599)
Q Consensus 222 ---~~~e~~~~~W~~~l~~~L~ 240 (599)
...++++.+|.+++++.|.
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~l~ 168 (169)
T 1obo_A 147 NQSDLTDDRIKSWVAQLKSEFG 168 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHhc
Confidence 2467889999999988773
No 27
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.84 E-value=8.2e-21 Score=179.54 Aligned_cols=142 Identities=25% Similarity=0.420 Sum_probs=121.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
++++|+|+|+||||+++|+.|++.+.+. +.++++++++++.++ +.+++.+||++|||+.|.+|+++..|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~---~~v~~~~~~~~~~~~------l~~~d~ii~g~pty~~g~~p~~~~~f~~ 71 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE---SIVDLNDIANADASD------LNAYDYLIIGCPTWNVGELQSDWEGIYD 71 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST---TTEEEEEGGGCCGGG------GGGCSEEEEECCEETTTEECHHHHHHGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc---cceEEEEhhhCCHhH------HhhCCEEEEEecccCCCcCCHHHHHHHH
Confidence 5799999999999999999999999642 348899999887766 8899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcc-hh-HHHHHHHHHHHHHHHCCCeEEecc-------------------ee-ecCC
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQ-YE-HFNKIGIVLDEELCKQGGARLVPL-------------------GL-GDDD 221 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~-Y~-~f~~~~k~ld~~L~~lGa~~i~~~-------------------g~-~D~~ 221 (599)
+|.... ++++++++||+|++. |+ +||.+.+.+++.|+++|++.+... ++ .|.+
T Consensus 72 ~l~~~~-----l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~ 146 (169)
T 1czn_A 72 DLDSVN-----FQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDED 146 (169)
T ss_dssp GGGGSC-----CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTT
T ss_pred Hhhhhc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCC
Confidence 997643 889999999999995 96 899999999999999999988631 32 2322
Q ss_pred ---CCcHHHHHHHHHHHHHHH
Q 007547 222 ---QCIEDDFTAWRELVWPEL 239 (599)
Q Consensus 222 ---~~~e~~~~~W~~~l~~~L 239 (599)
...++++.+|.+++++.|
T Consensus 147 ~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 147 NQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp TCGGGHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHh
Confidence 246889999999998775
No 28
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=99.83 E-value=1.4e-19 Score=187.87 Aligned_cols=184 Identities=24% Similarity=0.359 Sum_probs=141.0
Q ss_pred CCCCCCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEecCCC
Q 007547 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (599)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~~~~V~~~l~~lgl~~d~~~~l~~~~~ 367 (599)
.++...++.++|+..+.++.++...+++++.|..+. .+.|+||.|+.|..+...
T Consensus 22 ~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~-~~~~~pGQ~v~l~~~~~~------------------------- 75 (311)
T 3lo8_A 22 TYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGEN------------------------- 75 (311)
T ss_dssp SBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTT-SSCCCTTCEEEEECSSBC-------------------------
T ss_pred ccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCC-CCcccCCCEEEEeCCCCc-------------------------
Confidence 355677899999999999865555689999999875 689999999988653210
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhhhcccCCCccHHHHHHHHhhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHH
Q 007547 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (599)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~y~Dl~~~p~k~~l~~La~~a~d~~ek~~L~~l~s~~g~~~y~~~~~~~~~sl~dv 447 (599)
.. ..|
T Consensus 76 ----------------------------~~-----------------------------~~g------------------ 80 (311)
T 3lo8_A 76 ----------------------------PK-----------------------------KPG------------------ 80 (311)
T ss_dssp ----------------------------TT-----------------------------STT------------------
T ss_pred ----------------------------cc-----------------------------cCC------------------
Confidence 00 000
Q ss_pred HhhCCCCCCChHHHHHHhcCCCCCceeecCCCCCC---CCCEEEEEEEEEEecCCC-C---CcccCchhHHHhhcCCCCC
Q 007547 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPT-G---RIHKGVCSTWMKNAIPLEG 520 (599)
Q Consensus 448 L~~fps~~~p~~~ll~~l~p~l~pR~YSIsSsp~~---~~~~i~l~v~~v~~~~~~-g---~~~~G~~S~~L~~l~~g~~ 520 (599)
.++++|+|||+|+|.. .++.++|+|+++.+..+. + +...|.+|+||+++++|
T Consensus 81 -------------------~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G-- 139 (311)
T 3lo8_A 81 -------------------APQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG-- 139 (311)
T ss_dssp -------------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTT--
T ss_pred -------------------CCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCc--
Confidence 2357899999999864 258999999976443332 1 23679999999999999
Q ss_pred CCCceEEEEEeeCCCCcC-CC-CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcC-CCCCCEEEEEeccCCCcccchHHhh
Q 007547 521 NGDCSWAPIFIRPSNFKL-PA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMVRIFCYLL 597 (599)
Q Consensus 521 ~~~~~~v~i~~~~~~F~L-p~-~~~~piImIg~GTGIAPfrsflqer~~~~~~g-~~~g~~~Lf~G~R~~~~D~ly~~El 597 (599)
+.|.|.+|.|.|.+ |. +..+|+||||+|||||||++||+++......+ ...++++||||||+.+ |++|.+||
T Consensus 140 ----d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~-d~~~~~el 214 (311)
T 3lo8_A 140 ----DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD-SLLYDEEF 214 (311)
T ss_dssp ----CEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGG-GCSSHHHH
T ss_pred ----CEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChH-HhhHHHHH
Confidence 89999999997764 42 35789999999999999999999987632111 1136899999999988 99999998
Q ss_pred c
Q 007547 598 Q 598 (599)
Q Consensus 598 ~ 598 (599)
+
T Consensus 215 ~ 215 (311)
T 3lo8_A 215 T 215 (311)
T ss_dssp H
T ss_pred H
Confidence 5
No 29
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.82 E-value=7.1e-20 Score=167.29 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=112.9
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCCh-hHHHHHHH
Q 007547 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTD-NAARFYKW 164 (599)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~-na~~F~~~ 164 (599)
|+|+|+|+||||+++|+.|++.+.+. |++++++++++++.++ +.+++.+||++|||+.|.+|+ ++..|+++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~iiig~pty~~g~~p~~~~~~fl~~ 72 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIES--GKDVNTINVSDVNIDE------LLNEDILILGCSAMTDEVLEESEFEPFIEE 72 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHT--TCCCEEEEGGGCCHHH------HTTCSEEEEEECCBTTTBCCTTTHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHC--CCeEEEEEhhhCCHHH------HhhCCEEEEEcCccCCCCCChHHHHHHHHH
Confidence 58999999999999999999999988 8899999999988766 889999999999999999887 89999999
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHH
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELV 235 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l 235 (599)
+... ++++++++||+++.. ||.+.+.+++.|+++|++++.+...++..+ +. +.+.+|.+++
T Consensus 73 l~~~------l~~k~~~~f~t~g~~---~~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l 135 (138)
T 5nul_A 73 ISTK------ISGKKVALFGSYGWG---DGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKI 135 (138)
T ss_dssp HGGG------CTTCEEEEEEEESSS---CSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHH
T ss_pred HHhh------cCCCEEEEEEecCCC---CChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHH
Confidence 9763 789999999965443 388999999999999999998777776654 33 6666666554
No 30
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.82 E-value=1.6e-20 Score=202.34 Aligned_cols=182 Identities=15% Similarity=0.068 Sum_probs=143.7
Q ss_pred hHHHHHHhhcccCCCCcchhhhHHHHHHHHHHhhheeeeeccCCCCcCCCCCCCCCCCCCCcchhhHHHH------hcCC
Q 007547 10 VKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADI------AAGK 83 (599)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 83 (599)
.++|.++|+++. .+|+.+||++ ||. +||++.. ++++.| ...+
T Consensus 218 ~~~v~~~L~kl~----~Ldi~~I~P~-HGp-------i~r~~~~--------------------~ii~~Y~~w~~~~~~~ 265 (410)
T 4dik_A 218 KNYILEGAEKLS----SLKIKALLPG-HGL-------IWKKDPQ--------------------RLLNHYVSVAKGDPKK 265 (410)
T ss_dssp HHHHHHHHHHHH----TSCCSEEEES-SSC-------BBSSCHH--------------------HHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHh----CCCCCEEecC-Ccc-------hhhcCHH--------------------HHHHHHHHhhcccccc
Confidence 356889999998 5689999999 999 8987754 444444 3356
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-hHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
++|+|+|+|+|||||++|+.|++++.++ |+.+.++++.+.+..+ .+++.++.+++.+||+||||+ |++++.+..|+
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~--Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~-~~~~p~~~~~l 342 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEK--GFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE-AEIHPLMRFTL 342 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHT--TCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT-SSSCHHHHHHH
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhc--CCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC-CcCCHHHHHHH
Confidence 7899999999999999999999999998 8887666554443322 237778899999999999994 67777899999
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~ 236 (599)
..+.... ++|+++++|| +|+|.+.+++.+.++|+++|++.+.+ .+.......++++++-.+.+.
T Consensus 343 ~~l~~~~-----~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~-~~~~~~~~de~~lee~~~~~~ 406 (410)
T 4dik_A 343 LEIIDKA-----NYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF-TEIKGSNMDERKIEEAISLLK 406 (410)
T ss_dssp HHHHHHC-----CCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE-EEECSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcc-----cCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc-EEEECCCCCHHHHHHHHHHHH
Confidence 9998765 7899999999 89999999999999999999987755 444333345666665544433
No 31
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.80 E-value=9e-20 Score=171.59 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=122.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCC-CCCchHHHhhhccCCeEEEEeecCCCCCCChhHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (599)
.+++|+|+|+|+||||+++|+.|++.+.+. |++++++|+.+. +.++ +..++.+++.+||++|||+ |++| +..
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p--~~~ 75 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKT--GVGVDVVDLGAAVDLQE--LRELVGRCTGLVIGMSPAA-SAAS--IQG 75 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHT--TCEEEEEESSSCCCHHH--HHHHHHTEEEEEEECCBTT-SHHH--HHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHC--CCeEEEEECcCcCCHHH--HHHHHHhCCEEEEEcCcCC-CCcc--HHH
Confidence 357899999999999999999999999987 889999999988 7765 5666888999999999996 8877 378
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHH
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~ 238 (599)
|++.|.... ++++++++|| +|+|+|.+.+.+.+.|+++|++.+.+...+...+ ...+.+.+|.+.+.+.
T Consensus 76 ~l~~l~~~~-----~~~k~va~fg----s~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~ 146 (159)
T 3fni_A 76 ALSTILGSV-----NEKQAVGIFE----TGGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQW 146 (159)
T ss_dssp HHHHHHHHC-----CTTSEEEEEC----CSSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-----ccCCEEEEEE----cCCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999887644 7899999999 6788999999999999999999998766666554 3456777888888877
Q ss_pred HHH
Q 007547 239 LDQ 241 (599)
Q Consensus 239 L~~ 241 (599)
+..
T Consensus 147 ~~~ 149 (159)
T 3fni_A 147 VTR 149 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 32
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.80 E-value=1.2e-19 Score=171.06 Aligned_cols=142 Identities=14% Similarity=0.069 Sum_probs=118.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
|+++|+|+|+||||+++|+.|++.+.+. |++++++|+.+.+.++ +..++.+++.+||++|||| |.+|. ..|++
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~ 73 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKT--GVAVEMVDLRAVDPQE--LIEAVSSARGIVLGTPPSQ-PSEAV--ATALS 73 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHT--TCCEEEEETTTCCHHH--HHHHHHHCSEEEEECCBSS-CCHHH--HHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhC--CCeEEEEECCCCCHHH--HHHHHHhCCEEEEEcCCcC-CchhH--HHHHH
Confidence 5799999999999999999999999987 8889999999988766 5566778999999999996 78775 77999
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHHHH
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L~~ 241 (599)
.+.... ++++++++|| +|+|+|.+.+.+.+.|+++|++.+.+...+...+ +..+.+.+|.+.+...|.+
T Consensus 74 ~l~~~~-----l~gk~v~~fg----s~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 74 TIFAAA-----HNKQAIGLFD----SYGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp HHHHHC-----CTTSEEEEEC----CCCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-----hCCCEEEEEE----cCCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 887643 7899999999 6788899999999999999999987765554443 3456677888888777764
No 33
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.74 E-value=9.9e-18 Score=152.10 Aligned_cols=132 Identities=20% Similarity=0.281 Sum_probs=111.3
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCCh-hHHHHHHH
Q 007547 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTD-NAARFYKW 164 (599)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~-na~~F~~~ 164 (599)
++|+|+|+||||+++|+.|++.+.+. |++++++++++++.++ +.+++.+||++|||+.|.+|+ ++..|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAA--GADVESVRFEDTNVDD------VASKDVILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHT--TCCEEEEETTSCCHHH------HHTCSEEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhC--CCeEEEEEcccCCHHH------HhcCCEEEEEccccCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999987 8889999999887655 889999999999999898888 49999999
Q ss_pred HhcCCCCCCCCCCcEEEEEeecCcchhH-HHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHH
Q 007547 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (599)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~ 236 (599)
+... ++++++++|| +|++ ||.+.+.+.+.|+.+|++.+ +...++...+..+.+.+|.+++.
T Consensus 74 l~~~------l~~k~~~~~~----t~g~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~l~ 135 (137)
T 2fz5_A 74 LAPK------LKGKKVGLFG----SYGWGSGEWMDAWKQRTEDTGATVI-GTAIVNEMPDNAPECKELGEAAA 135 (137)
T ss_dssp HGGG------CSSCEEEEEE----EESSCCSHHHHHHHHHHHHTTCEEE-EEEEEESSSSSCTHHHHHHHHHH
T ss_pred hhhh------cCCCEEEEEE----ecCCCCchHHHHHHHHHHHCCCEEc-CcEEEeeCCChHHHHHHHHHHHh
Confidence 9651 8899999999 4554 78999999999999999988 44445443322677778877653
No 34
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.72 E-value=7.2e-18 Score=150.69 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=87.7
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHH
Q 007547 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (599)
Q Consensus 86 v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L 165 (599)
++|+|+|+|||||++|++|+ +. + + ++++ ++ + .++.+||++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~----~--~---~i~~---~~------~-~~~~ii~g~pt~~~g~~p~~~~~fl~~- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP----A--V---QIGE---DL------V-IDEDFILITYTTGFGNVPERVLEFLER- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC----E--E---ECCT---TC------C-CCSCEEEEECCBTTTBCCHHHHHHHHH-
T ss_pred CEEEEECCChhHHHHHHHhc--cc----C--C---CcCc---cc------c-cCCCEEEEEeecCCCcCCHHHHHHHHH-
Confidence 47999999999999999998 22 2 2 3332 22 3 488999999999999999999999875
Q ss_pred hcCCCCCCCCCCcEEEEEeecCcchhH-HHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHH
Q 007547 166 TEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (599)
Q Consensus 166 ~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~ 236 (599)
+++++++|||+||++|++ ||.+++.++++|.. ..... ..+..++...+.+.+|.++++
T Consensus 59 ---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~~~~-~~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 ---------NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PIVSK-FELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEEEE-EETTCCHHHHHHHHHHHHHHT
T ss_pred ---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---ccEEE-EecCCCHHHHHHHHHHHHHhc
Confidence 356899999999999987 99999999999753 22222 122222234566889988775
No 35
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.70 E-value=2.7e-17 Score=168.53 Aligned_cols=120 Identities=15% Similarity=0.270 Sum_probs=97.5
Q ss_pred CCCCCceeecCCCCCCCCCEEEEEEEEEEec--CC-C---CCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCC
Q 007547 467 PHLQPRYYSISSSPRFAPDRVHVTCALVYGP--TP-T---GRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPA 540 (599)
Q Consensus 467 p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~--~~-~---g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~ 540 (599)
....+|+|||+|+|.. .+.++|+|+++... +. . .+...|.+|+||+++++| +.|.|.+|.|.|.++
T Consensus 82 ~~~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~G------d~v~v~gP~G~f~~~- 153 (290)
T 2r6h_A 82 EEETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPG------DKVMMSGPYGDFHIQ- 153 (290)
T ss_dssp CSCEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTT------CEEEEEEEECCCCCC-
T ss_pred CCCcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCC------CEEEEEecccCCcCC-
Confidence 3467899999999864 57899999864211 00 0 113479999999999999 899999999999987
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 541 NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 541 ~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+..+|+||||+|||||||++||++++.. ....++++||||||+.+ |++|++||+
T Consensus 154 ~~~~~~vliagGtGitP~~s~l~~~~~~---~~~~~~v~l~~~~r~~~-d~~~~~el~ 207 (290)
T 2r6h_A 154 DTDAEMLYIGGGAGMAPLRAQILHLFRT---LKTGRKVSYWYGARSKN-EIFYEEDFR 207 (290)
T ss_dssp SSSCEEEEEEEGGGHHHHHHHHHHHHHT---SCCCSCEEEEEEESSGG-GCCSHHHHH
T ss_pred CCCCeEEEEECccCHHHHHHHHHHHHHh---cCCCCcEEEEEEcCCHH-HHHHHHHHH
Confidence 4578999999999999999999998863 11357899999999998 999999985
No 36
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.70 E-value=9.2e-18 Score=170.01 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=100.1
Q ss_pred ChHHHHHHhcCC---CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeC
Q 007547 457 PIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (599)
Q Consensus 457 p~~~ll~~l~p~---l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~ 533 (599)
..+|++.+..|. ..+|+|||+|+|.. .+.++|+|+.+. .|.+|+||+++++| +.+.|.+|.
T Consensus 35 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~S~~l~~l~~G------d~v~v~gP~ 98 (262)
T 1ep3_B 35 LPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGD---------ETTGTYKLSKLESG------AKVDVMGPL 98 (262)
T ss_dssp STTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCC---------TTSHHHHHHTCCTT------CEEEEEEEE
T ss_pred CCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEec---------CCchHHHHhcCCCC------CEEEEEccc
Confidence 345665554343 68999999998854 578999987632 58899999999999 899999999
Q ss_pred CC-CcCCCC-CCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 534 SN-FKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 534 ~~-F~Lp~~-~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+ |.++.+ ..+|+||||+|||||||+++++++... + .+++||||+|+++ |++|++||+
T Consensus 99 G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~---~---~~v~l~~~~r~~~-~~~~~~el~ 158 (262)
T 1ep3_B 99 GNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKT---G---CQMTILLGFASEN-VKILENEFS 158 (262)
T ss_dssp SBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHH---T---CEEEEEEEESSGG-GCCCHHHHH
T ss_pred CCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHc---C---CeEEEEEEcCCHH-HhhhHHHHh
Confidence 97 999865 468999999999999999999998862 2 6899999999998 999999986
No 37
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.70 E-value=2.3e-17 Score=165.58 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=101.3
Q ss_pred ChHHHHHHhcCC-CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCC
Q 007547 457 PIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPS 534 (599)
Q Consensus 457 p~~~ll~~l~p~-l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~ 534 (599)
..+|++.+..|. ..+|+|||+|+|.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.|.+|.|
T Consensus 45 ~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk~~~---------~G~~s~~l~~~l~~G------d~v~v~gP~G 108 (250)
T 1tvc_A 45 EPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIRVLP---------EGRFSDYLRNDARVG------QVLSVKGPLG 108 (250)
T ss_dssp CSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEECCCT---------TSSSHHHHHHHSSSS------SEEEEEEEEC
T ss_pred CCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEEECC---------CCCchHHHHhcCCCC------CEEEEEcCcc
Confidence 445666554354 67899999999864 578999987531 599999996 79999 8999999999
Q ss_pred CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 ~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|.++.+..+++||||+|||||||++++++.... + ...+++||||+|+.+ |++|.+||+
T Consensus 109 ~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~ 167 (250)
T 1tvc_A 109 VFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEW---T-APNETRIYFGVNTEP-ELFYIDELK 167 (250)
T ss_dssp CCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHH---T-CCSCEEEEEECSSST-TCCCHHHHH
T ss_pred ccccCccCCceEEEEEeccCHHHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HhhhHHHHH
Confidence 9999876668999999999999999999998863 3 457899999999998 999999985
No 38
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.69 E-value=3e-17 Score=166.95 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=96.4
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcC--------CCC
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL--------PAN 541 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~L--------p~~ 541 (599)
.+|+|||+|++.. ++.++|+|+++.+.+..+....|.+|+||+++++| +.|.|.+|.|.|.+ +.+
T Consensus 64 ~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~~~~~~~~~f~l~~~ 136 (275)
T 1umk_A 64 VVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIG------DTIEFRGPSGLLVYQGKGKFAIRPD 136 (275)
T ss_dssp EEEEECCSSCTTC-CSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTT------CEEEEEEEECSEEEEETTEEEECSS
T ss_pred EEeccccCCccCC-CCeEEEEEEEeccCcccccCCCChhHHHHhcCCCC------CEEEEEcCccceEecCCcccccccc
Confidence 6799999999863 68999999886544333333469999999999999 89999999998744 432
Q ss_pred --------CCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 542 --------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 542 --------~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
..+|+||||+|||||||+++++++.. ++...++++||||||+.+ |++|++||+
T Consensus 137 ~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~---~~~~~~~v~l~~~~r~~~-d~~~~~el~ 197 (275)
T 1umk_A 137 KKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMK---DPDDHTVCHLLFANQTEK-DILLRPELE 197 (275)
T ss_dssp TTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHT---CTTCCCEEEEEEEESSGG-GCTTHHHHH
T ss_pred ccccccccCCceEEEEecCccHhHHHHHHHHHHh---CCCCCcEEEEEEEcCCHH-HhhHHHHHH
Confidence 35799999999999999999999875 212457899999999987 999999985
No 39
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.68 E-value=4.6e-17 Score=162.51 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=94.3
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEEEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piImI 549 (599)
..|+|||+|++.. .+.++|+|+++. .|.+|+||+++++| +.+.|.+|.|+|.++.+..++++||
T Consensus 59 ~~R~ysi~s~~~~-~~~~~l~vk~~~---------~G~~S~~l~~l~~G------d~v~v~gP~G~f~~~~~~~~~~vli 122 (243)
T 2eix_A 59 IYRPYTPVSSDDE-KGYFDLIIKVYE---------KGQMSQYIDHLNPG------DFLQVRGPKGQFDYKPNMVKEMGMI 122 (243)
T ss_dssp EEEEECCCSCTTC-CSEEEEEEECCT---------TCHHHHHHHTCCTT------CEEEEEEEECSCCCCTTSSSEEEEE
T ss_pred EEeeeeecCCCCC-CCEEEEEEEEcC---------CCCcchHhhcCCCC------CEEEEECCeEEEEeCCCCCcEEEEE
Confidence 4699999999854 578999987631 59999999999999 8999999999999987667899999
Q ss_pred eCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 550 g~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|+|||||||++++++.... ....++++||||+|+.+ |++|++||+
T Consensus 123 agG~GiaP~~~~l~~l~~~---~~~~~~v~l~~~~r~~~-~~~~~~el~ 167 (243)
T 2eix_A 123 AGGTGITPMLQVARAIIKN---PKEKTIINLIFANVNED-DILLRTELD 167 (243)
T ss_dssp EEGGGHHHHHHHHHHHHTC---TTCCCEEEEEEEEEEGG-GCTTHHHHH
T ss_pred ecCccHHHHHHHHHHHHhC---CCCCcEEEEEEEcCCHH-HhhHHHHHH
Confidence 9999999999999998752 11357899999999998 999999985
No 40
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.68 E-value=3.3e-17 Score=162.37 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=98.0
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHH-HhhcCCCCCCCCceEEEEEeeCCC
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW-MKNAIPLEGNGDCSWAPIFIRPSN 535 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~-L~~l~~g~~~~~~~~v~i~~~~~~ 535 (599)
..+|++.+-.|...+|+|||+|+|.. ++.++|+|+++. .|.+|+| +.++++| +.+.|.+|.|.
T Consensus 31 ~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~~~~~l~~G------d~v~v~gP~G~ 94 (232)
T 1qfj_A 31 RAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGASE---------INLYAKAVMDRILKD------HQIVVDIPHGE 94 (232)
T ss_dssp CTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHHH------SEEEEEEEECS
T ss_pred CCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEEcc---------CCchhHHHHHhCCCC------CEEEEeCCccc
Confidence 45777776546678999999999864 578999997753 3666665 6679998 89999999999
Q ss_pred CcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 536 FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 536 F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|.++.+..+|+||||+|||||||++++++.... + ..++++||||+|+.+ |++|.+||+
T Consensus 95 ~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~ 152 (232)
T 1qfj_A 95 AWLRDDEERPMILIAGGTGFSYARSILLTALAR---N-PNRDITIYWGGREEQ-HLYDLCELE 152 (232)
T ss_dssp CCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHH---C-TTCCEEEEEEESSGG-GCTTHHHHH
T ss_pred eEeCCCCCCcEEEEEecccHhHHHHHHHHHHhc---C-CCCcEEEEEeeCCHH-HhhhHHHHH
Confidence 998876678999999999999999999999863 3 457899999999998 999999985
No 41
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.68 E-value=1.1e-16 Score=159.57 Aligned_cols=112 Identities=15% Similarity=0.317 Sum_probs=93.3
Q ss_pred CCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCCCCcCCCCCCCcE
Q 007547 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (599)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~pi 546 (599)
.+++|+|||+|+|. .+.++|+|+.+. .++...|.+|+||+ ++++| +.+.|.+|.|.|.++ +..+|+
T Consensus 51 ~~~~R~ySi~s~~~--~~~~~i~vk~~~----~~~~~~G~~S~~l~~~l~~G------~~v~v~gP~G~~~~~-~~~~~~ 117 (243)
T 4eh1_A 51 YREIRQYSLSHASN--GREYRISVKREG----VGSDNPGLVSHYLHNNVKVG------DSVKLYAPAGDFFYV-ERERPV 117 (243)
T ss_dssp SCEEEEEEBCSCCC--SSCEEEEEECTT----TTSSSCCHHHHHHHHHCCTT------CEEEEEEEECSCCCC-CCSSCE
T ss_pred cccceeeEeccCCC--CCeEEEEEEEee----cCCCCCCeehhHHHhcCCCC------CEEEEEccCcccCcC-CCCCCE
Confidence 34789999999985 367888886531 12234699999997 59999 899999999999988 667899
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 547 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 547 ImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
||||+|||||||+++++++.. ++ ... ++||||||+.+ |++|.+||+
T Consensus 118 vliagGtGitp~~~~l~~l~~---~~-~~~-v~l~~~~r~~~-~~~~~~el~ 163 (243)
T 4eh1_A 118 VLISAGVGATPMQAILHTLAK---QN-KSG-VTYLYACNSAK-EHTFAQETA 163 (243)
T ss_dssp EEEEEGGGHHHHHHHHHHHHH---TT-CCS-EEEEEEESSGG-GCTTHHHHH
T ss_pred EEEEccccHHHHHHHHHHHHH---cC-CCe-EEEEEEeCChh-hhhHHHHHH
Confidence 999999999999999999886 22 223 99999999988 999999985
No 42
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.67 E-value=1e-16 Score=171.76 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=94.8
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPII 547 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piI 547 (599)
.++|+|||+|+|. .+.++|+|+.+. .|.+|+||++ +++| +.+.|.+|.|.|.++.+..+|+|
T Consensus 201 ~~~R~YSi~s~p~--~~~~~i~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v~gP~G~f~l~~~~~~~~v 263 (396)
T 1gvh_A 201 QEIRQYSLTRKPD--GKGYRIAVKREE---------GGQVSNWLHNHANVG------DVVKLVAPAGDFFMAVADDTPVT 263 (396)
T ss_dssp CEEEEEECCSCCC--SSCEEEEEECCT---------TCHHHHHHHHTCCTT------CEEEEEEEECSCCCCCCTTCCEE
T ss_pred ceeecceeccCCC--CCeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEEcCCcceECCCCCCCCEE
Confidence 5789999999986 477999887531 5999999998 9999 89999999999999866679999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|||||||+++++++... + ..++++||||+|+.+ |++|++||+
T Consensus 264 lIagGtGitP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~ 309 (396)
T 1gvh_A 264 LISAGVGQTPMLAMLDTLAKA---G-HTAQVNWFHAAENGD-VHAFADEVK 309 (396)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH---T-CCSCEEEEEEESCTT-TCCSHHHHH
T ss_pred EEecchhHhHHHHHHHHHHhc---C-CCCcEEEEEEeCCHH-HhhhHHHHH
Confidence 999999999999999998863 3 457899999999998 999999985
No 43
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.67 E-value=8.7e-17 Score=163.01 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=94.9
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCC-cccCchhHHHhhcCCCCCCCCceEEEEEeeCCC--------CcCCC
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGR-IHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN--------FKLPA 540 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~-~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~~~--------F~Lp~ 540 (599)
.+|+|||+|++.. ++.++|+|+++.. ...++ ...|.+|+||+++++| +.+.|.+|.|. |.++.
T Consensus 60 ~~R~ySi~s~~~~-~~~~~l~vk~~~~-~~~~~~~~~G~~s~~l~~l~~G------d~v~v~gP~G~~~~~~~g~f~l~~ 131 (270)
T 2cnd_A 60 CMRAYTPTSMVDE-IGHFDLLVKVYFK-NEHPKFPNGGLMTQYLDSLPVG------SYIDVKGPLGHVEYTGRGSFVING 131 (270)
T ss_dssp EEEEECCCSCTTC-CSEEEEEEECCCS-SCBTTBTTCCHHHHHHHHCCTT------CEEEEEEEECSEECCSSSCEEETT
T ss_pred EEEeeccCCCccC-CCEEEEEEEEecc-CcccccCCCCchhhHHhcCCCC------CEEEEECCcccceeccccceeccC
Confidence 5799999999864 5889999987521 11111 1359999999999999 89999999986 66764
Q ss_pred --CCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 541 --NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 541 --~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+..+|+||||+|||||||+++++++.... ....++++||||||+.+ |++|.+||+
T Consensus 132 ~~~~~~~~vliagGtGiaP~~~~l~~l~~~~--~~~~~~v~l~~~~r~~~-d~~~~~el~ 188 (270)
T 2cnd_A 132 KQRNARRLAMICGGSGITPMYQIIQAVLRDQ--PEDHTEMHLVYANRTED-DILLRDELD 188 (270)
T ss_dssp EEECCSEEEEEEEGGGHHHHHHHHHHHHHTT--TTCCCEEEEEEEESCGG-GCTTHHHHH
T ss_pred CcccCCEEEEEeccccHHHHHHHHHHHHhcC--CCCCcEEEEEEEcCCHH-HcchHHHHH
Confidence 24689999999999999999999998631 11357899999999998 999999985
No 44
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.66 E-value=1.1e-16 Score=167.80 Aligned_cols=119 Identities=25% Similarity=0.290 Sum_probs=100.0
Q ss_pred ChHHHHHHhcCC-CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCC
Q 007547 457 PIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPS 534 (599)
Q Consensus 457 p~~~ll~~l~p~-l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~ 534 (599)
..+|++.+..|. ..+|+|||+|+|. .+.++|+|+++. .|.+|+||+ ++++| +.+.|.+|.|
T Consensus 140 ~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk~~~---------~G~~S~~L~~~l~~G------d~v~v~gP~G 202 (338)
T 1krh_A 140 LAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVRNVP---------QGKMSEYLSVQAKAG------DKMSFTGPFG 202 (338)
T ss_dssp CTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEECCT---------TCHHHHHHHTTCCTT------CEEEEEEEEC
T ss_pred CCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEEEcC---------CCCchhhHhhccCCC------CEEEEECCcc
Confidence 345666554354 5789999999986 688999997632 599999995 79999 8999999999
Q ss_pred CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 ~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|.++.+ .+|+||||+|||||||++++++.... + ..++++||||+|+.+ |++|.+||+
T Consensus 203 ~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~ 260 (338)
T 1krh_A 203 SFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQK---G-SEHPVRLVFGVTQDC-DLVALEQLD 260 (338)
T ss_dssp SCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHH---C-CSSCEEEEEEESSGG-GCCCHHHHH
T ss_pred ceEeCCC-CceEEEEEccccHhHHHHHHHHHHHc---C-CCCeEEEEEEeCCHH-HhhhHHHHH
Confidence 9998865 48999999999999999999999862 3 357899999999998 999999985
No 45
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.65 E-value=6.7e-17 Score=161.79 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=92.1
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEE-eeCCCCcCCCCC-CCcE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF-IRPSNFKLPANP-SVPI 546 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~-~~~~~F~Lp~~~-~~pi 546 (599)
..+|+|||+|+|.. +.++|+|+.+. .|.+|+||+++++| +.+.|. +|.|.|.++.++ .+++
T Consensus 47 ~~~R~ySi~s~~~~--~~l~~~v~~~~---------~G~~s~~l~~l~~G------d~v~v~~gP~G~f~l~~~~~~~~~ 109 (248)
T 1fdr_A 47 RVQRAYSYVNSPDN--PDLEFYLVTVP---------DGKLSPRLAALKPG------DEVQVVSEAAGFFVLDEVPHCETL 109 (248)
T ss_dssp CEEEEEECCSCTTC--SSEEEEEECCT---------TCSSHHHHHTCCTT------CEEEEESSCBCCCSGGGSCCCSEE
T ss_pred eeeeeecccCCCCC--CcEEEEEEEeC---------CCchhhHHHhCCCc------CEEEEecCCcceeEcCCCCCCceE
Confidence 36799999999863 67898886531 58999999999999 899999 899999988654 6899
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 547 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 547 ImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|||+|||||||++++++... .+ ..++++||||+|+.+ |++|.+||+
T Consensus 110 vliagG~GitP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~ 156 (248)
T 1fdr_A 110 WMLATGTAIGPYLSILRLGKD---LD-RFKNLVLVHAARYAA-DLSYLPLMQ 156 (248)
T ss_dssp EEEEEGGGGHHHHHHHHHCCS---CT-TCSEEEEEEEESSGG-GCTTHHHHH
T ss_pred EEEEecccHHHHHHHHHHHHh---hC-CCCcEEEEEEcCCHH-HhhHHHHHH
Confidence 999999999999999998653 22 357899999999988 999999985
No 46
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.65 E-value=2.9e-16 Score=168.53 Aligned_cols=114 Identities=15% Similarity=0.290 Sum_probs=95.8
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHh-hcCCCCCCCCceEEEEEeeCCCCcCCCC----CC
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPSNFKLPAN----PS 543 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~~~F~Lp~~----~~ 543 (599)
.++|+|||+|+|. ++.++|+|+.... .+....|.+|+||+ ++++| +.+.|.+|.|.|.++.+ ..
T Consensus 204 ~~~R~ySi~s~p~--~~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~G------d~v~v~gP~G~f~l~~~~~~~~~ 272 (399)
T 4g1v_A 204 DALRHYSLCSAST--KNGLRFAVKMEAA---RENFPAGLVSEYLHKDAKVG------DEIKLSAPAGDFAINKELIHQNE 272 (399)
T ss_dssp CEEEEEEBSCSCC--TTCEEEEEECCCC---BTTBCCCHHHHHHHHTCCTT------CEEEEEEEECSCCCCTTTTTCSS
T ss_pred ceeeeecccCCCC--CCeEEEEEEeccC---CCCCCCCEehhHHHhCCCCC------CEEEEEecccceeeCcccccCCC
Confidence 4789999999985 4778888875321 11124799999997 79999 89999999999999876 57
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 544 VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 544 ~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|+||||+|||||||+++++++... + ..++++||||||+.+ |++|.+||+
T Consensus 273 ~~~vlIagG~GitP~~s~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~ 322 (399)
T 4g1v_A 273 VPLVLLSSGVGVTPLLAMLEEQVKC---N-PNRPIYWIQSSYDEK-TQAFKKHVD 322 (399)
T ss_dssp SCEEEEEEGGGHHHHHHHHHHHHHH---C-TTSCEEEEEEESSST-TSTTHHHHH
T ss_pred CCEEEEecceeHhHHHHHHHHHHHc---C-CCCCEEEEEecCCHH-HhhhHHHHH
Confidence 8999999999999999999999873 3 457999999999988 999999985
No 47
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.64 E-value=1.5e-16 Score=166.09 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=100.3
Q ss_pred ChHHHHHHhcCCCCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCc-hhHHHh-hcCCCCCCCCceEEEEEeeCC
Q 007547 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGV-CSTWMK-NAIPLEGNGDCSWAPIFIRPS 534 (599)
Q Consensus 457 p~~~ll~~l~p~l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~-~S~~L~-~l~~g~~~~~~~~v~i~~~~~ 534 (599)
..+|++.+-.|....|+|||+|+|.. .+.++|+|+.+. .|. +|+||+ ++++| +.+.|.+|.|
T Consensus 40 ~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk~~~---------~G~g~S~~L~~~l~~G------d~v~v~gP~g 103 (321)
T 2pia_A 40 EAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVKRDS---------NGRGGSISFIDDTSEG------DAVEVSLPRN 103 (321)
T ss_dssp CTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEECCT---------TSCSHHHHHHHSCCTT------CEEEECCCBC
T ss_pred CCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEEEec---------CCcchhHHHHhcCCCC------CEEEEeCCcc
Confidence 45666666546568999999999864 578999987531 587 999999 79999 8999999999
Q ss_pred CCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 535 ~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
.|.++.+ .+++||||+|||||||++++++.... + ..+++||||+|+++ |++|.+||+
T Consensus 104 ~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~---~--~~~v~l~~~~r~~~-~~~~~~el~ 160 (321)
T 2pia_A 104 EFPLDKR-AKSFILVAGGIGITPMLSMARQLRAE---G--LRSFRLYYLTRDPE-GTAFFDELT 160 (321)
T ss_dssp CSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHH---C--SSEEEEEEEESCGG-GCTTHHHHH
T ss_pred ccccCCC-CCCEEEEEecccHhHHHHHHHHHHHc---C--CCcEEEEEEECChh-hhHHHHHHh
Confidence 9999865 68999999999999999999998862 3 27899999999998 999999986
No 48
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.64 E-value=1.2e-16 Score=146.96 Aligned_cols=123 Identities=17% Similarity=0.185 Sum_probs=91.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
++|++.|+|+|+||||+.+|++|++. . .+++.+ . +..++.+|+++||||.|++|+++.+|
T Consensus 7 ~~m~i~I~Y~S~TGNt~~vA~~l~~~---------~-~~~i~~----~------~~~~~~~ilv~pTyG~G~~P~~v~~F 66 (139)
T 1rlj_A 7 SNAMVQIIFDSKTGNVQRFVNKTGFQ---------Q-IRKVDE----M------DHVDTPFVLVTYTTNFGQVPASTQSF 66 (139)
T ss_dssp HHSCCEEEECCSSSHHHHHHTTSCCS---------E-EEETTS----C------SCCCSCEEEEECCBGGGBCCHHHHHH
T ss_pred CCCEEEEEEECCChhHHHHHHHhccc---------c-ceEecc----c------cccCCCEEEEEcCcCCCcCcHHHHHH
Confidence 35678999999999999999998642 1 234432 2 45567899999999999999999998
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPE 238 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~ 238 (599)
++.. +++.|+|||+||++| +.||.+++.+++++ |...+. .-+.+....+.+.+.+|.+++|..
T Consensus 67 l~~~----------~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~-~~el~g~~~D~~~~~~~~~~~~~~ 130 (139)
T 1rlj_A 67 LEKY----------AHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILH-KFELSGTSKDVELFTQEVERVVTK 130 (139)
T ss_dssp HHHH----------GGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEE-EEETTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhC----------CCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcc-eEEEcCCHHHHHHHHHHHHHHHHH
Confidence 8532 347899999999999 78999999998776 544433 222222224567788999888753
No 49
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.64 E-value=3.1e-16 Score=168.39 Aligned_cols=112 Identities=20% Similarity=0.298 Sum_probs=95.1
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhh-cCCCCCCCCceEEEEEeeCCCCcCCCCCCCcEE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPII 547 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~~~F~Lp~~~~~piI 547 (599)
.++|+|||+|+|. .+.++|+|+.+. .++...|.+|+||++ +++| +.|.|.+|.|.|.++.+..+|+|
T Consensus 203 ~~~R~YSi~s~p~--~~~~~i~Vk~~~----~~~~~~G~~S~~L~~~l~~G------d~v~v~gP~G~f~l~~~~~~~~v 270 (403)
T 1cqx_A 203 QQIRQYSLSDMPN--GRTYRISVKREG----GGPQPPGYVSNLLHDHVNVG------DQVKLAAPYGSFHIDVDAKTPIV 270 (403)
T ss_dssp EEEEEEECCSCCC--SSCEEEEEECCC----BTTBCCCHHHHHHHHHCCTT------CEEEECCCBCSCSCCTTCCSCEE
T ss_pred ceeecceecCCCC--CCeEEEEEEECC----CCCCCCCeehHHHhhCCCCC------CEEEEecCccCcccCCCCCCCEE
Confidence 4689999999985 578999987642 112236999999995 9999 89999999999999866678999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|||||||+++++++.. + ..++++||||||+.+ |++|++||+
T Consensus 271 lIagGtGitP~~s~l~~l~~----~-~~~~v~l~~~~r~~~-~~~~~~el~ 315 (403)
T 1cqx_A 271 LISGGVGLTPMVSMLKVALQ----A-PPRQVVFVHGARNSA-VHAMRDRLR 315 (403)
T ss_dssp EEESSCCHHHHHHHHHHHTC----S-SCCCEEEEEEESCSS-SCHHHHHHH
T ss_pred EEEecccHhhHHHHHHHHHh----C-CCCcEEEEEEeCChh-hCcHHHHHH
Confidence 99999999999999999864 1 457899999999999 999999985
No 50
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.63 E-value=2.6e-16 Score=168.00 Aligned_cols=143 Identities=14% Similarity=0.020 Sum_probs=115.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
+++++|+|+|+||||+++|+.+++.+.+. |+.++++++++.+..+ +..++.+++.+||++|||+.|.+| .+..|+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l 325 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAG--GCEVKLFKLSVSDRND--VIKEILDARAVLVGSPTINNDILP-VVSPLL 325 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEEGGGSCHHH--HHHHHHHCSEEEEECCCBTTBCCG-GGHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH--HHHHHHHCCEEEEECCccCccchH-HHHHHH
Confidence 58999999999999999999999999877 8889999998877655 556678999999999999777766 488899
Q ss_pred HHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecc-eeecCCC--CcHHHHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL-GLGDDDQ--CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~-g~~D~~~--~~e~~~~~W~~~l~~~L 239 (599)
+++.... ++++++++|| +|+|+|.+.+.+.+.|+++|++.+.+. ..++... ...+.+.+|.+++...+
T Consensus 326 ~~l~~~~-----~~~k~~~~~~----s~g~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~ 396 (398)
T 1ycg_A 326 DDLVGLR-----PKNKVGLAFG----AYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARI 396 (398)
T ss_dssp HHHHHHC-----CSSCEEEEEE----EESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccc-----cCCCEEEEEE----eCCCchHHHHHHHHHHHHCCeEEecCceEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 9987643 7899999999 588899999999999999999998754 4444332 23455556666655443
No 51
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.62 E-value=2.2e-16 Score=160.74 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=92.0
Q ss_pred CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEE-eeCCCCcCCCCC-CCcE
Q 007547 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF-IRPSNFKLPANP-SVPI 546 (599)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~-~~~~~F~Lp~~~-~~pi 546 (599)
..+|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++++| +.+.|. +|.|.|.++.+. ..++
T Consensus 61 ~~~R~ySi~s~~~~--~~~~l~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~gP~G~f~~~~~~~~~~~ 123 (272)
T 2bgi_A 61 PIMRAYSIASPAWD--EELEFYSIKV---------PDGPLTSRLQHIKVG------EQIILRPKPVGTLVIDALLPGKRL 123 (272)
T ss_dssp EEEEEEECCSCTTC--SEEEEEEECC---------TTCTTHHHHTTCCTT------CEEEEEEEEECSCCGGGBCCCSEE
T ss_pred eeeeeeeeccCCCC--CeEEEEEEEc---------cCCCchhHHHhCCCC------CEEEEeeCCCCcccccccccCCeE
Confidence 36799999999863 7899888653 159999999999999 899999 799999987654 6899
Q ss_pred EEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 547 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 547 ImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+|||+|||||||+++++++.. .+ ..++++||||+|+.+ |++|.+||+
T Consensus 124 vliagG~GiaP~~~~l~~l~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~ 170 (272)
T 2bgi_A 124 WFLATGTGIAPFASLMREPEA---YE-KFDEVIMMHACRTVA-ELEYGRQLV 170 (272)
T ss_dssp EEEEEGGGGHHHHHHTTCGGG---GT-SCSEEEEEEEESSSG-GGHHHHHHH
T ss_pred EEEeecccHHHHHHHHHHHHh---cC-CCCcEEEEEEeCCHH-HhhHHHHHH
Confidence 999999999999999998764 22 357899999999998 999999986
No 52
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.61 E-value=3e-16 Score=158.10 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=91.2
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEE-eeCCCCcCCCCC-CCcEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF-IRPSNFKLPANP-SVPII 547 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~-~~~~~F~Lp~~~-~~piI 547 (599)
..|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++++| +.+.|. +|.|.|.++.++ .+++|
T Consensus 48 ~~R~ySi~s~~~~--~~~~~~i~~~---------~~G~~s~~l~~l~~G------d~v~v~~gp~G~f~~~~~~~~~~~v 110 (257)
T 2qdx_A 48 LMRAYSIASPNYE--EHLEFFSIKV---------PDGPLTSRLQHLKEG------DELMVSRKPTGTLVHDDLLPGKHLY 110 (257)
T ss_dssp EEEEEECCSCTTS--SEEEEEEECC---------TTCTTHHHHTTCCTT------CEEEECSCCBCSCCGGGBCSCSEEE
T ss_pred eeeeeEeecCCCC--CeEEEEEEEe---------CCCcchhHHHhCCCC------CEEEEecCCCCCccCCcccCCCeEE
Confidence 5799999999863 7889888653 159999999999999 899998 788999887653 68999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|||||||++++++..... ..++++||||+|+.+ |++|.+||+
T Consensus 111 liagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~ 156 (257)
T 2qdx_A 111 LLSTGTGMAPFLSVIQDPETYE----RYEKVILVHGVRWVS-ELAYADFIT 156 (257)
T ss_dssp EEEEGGGGHHHHHHTTCHHHHH----HCSEEEEEEEESSGG-GCTTHHHHH
T ss_pred EEEeceEHHHHHHHHHHHHhcC----CCCeEEEEEEcCCHH-HhHhHHHHH
Confidence 9999999999999999876532 236899999999998 999999986
No 53
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.60 E-value=2.1e-16 Score=160.50 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=91.8
Q ss_pred CCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEE-eeCCCCcCCC-CCCCcEE
Q 007547 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF-IRPSNFKLPA-NPSVPII 547 (599)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~-~~~~~F~Lp~-~~~~piI 547 (599)
..|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++| +.+.|. +|.|.|.++. +..+|++
T Consensus 64 ~~r~ySi~s~~~--~~~~~~~v~~~---------~~G~~s~~l~~l~~G------d~v~v~~gP~G~~~~~~~~~~~~~v 126 (271)
T 4fk8_A 64 LTRAYSIVSPNY--EEHLEFFSIKV---------QNGPLTSRLQHLKVG------DPVLIGKKPTGTLVADNLLPGKTLW 126 (271)
T ss_dssp EEEEEECCSCTT--SSSEEEEEECC---------TTCTTHHHHTTCCTT------CEEEEESCCBCSCCGGGBCCCSEEE
T ss_pred eeeeEeccCCCC--CCcEEEEEEEE---------CCCchhhHHhcCCCC------CEEEEecCCCcceecCCcCCCCeEE
Confidence 579999999885 46788887653 159999999999999 899999 9999998875 3578999
Q ss_pred EEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 548 mIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
|||+|||||||+++++++.... ..++++||||+|+.+ |++|.+||+
T Consensus 127 liagG~GitP~~~~l~~l~~~~----~~~~v~l~~~~r~~~-~~~~~~el~ 172 (271)
T 4fk8_A 127 MLSTGTGLAPFMSIIRDPDIYE----RFDKVVLTHTCRLKG-ELAYMDYIK 172 (271)
T ss_dssp EEECGGGGHHHHHHTTCHHHHH----HCSEEEEEECCCSHH-HHHHHHHHH
T ss_pred EEECCEEHHHHHHHHHHHHhcC----CCCCEEEEEecCCHH-HHhHHHHHH
Confidence 9999999999999999987632 246899999999998 999999986
No 54
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.60 E-value=1.8e-15 Score=161.66 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=121.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
.+++++|+|+|+||||+++|+.|++.+.+. |+.++++++.+.+..+ +..++.+++.+||++||||.|.+| .+..|
T Consensus 251 ~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~ 325 (402)
T 1e5d_A 251 PTNKVVIFYDSMWHSTEKMARVLAESFRDE--GCTVKLMWCKACHHSQ--IMSEISDAGAVIVGSPTHNNGILP-YVAGT 325 (402)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEETTTSCHHH--HHHHHHTCSEEEEECCCBTTBCCH-HHHHH
T ss_pred CCCcEEEEEECCChhHHHHHHHHHHHHHhC--CCeEEEEECCCCCHHH--HHHHHHHCCEEEEECCccCCCchH-HHHHH
Confidence 368999999999999999999999999877 8889999999887655 556678999999999999777655 68999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHHH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~L 239 (599)
++++.... ++++++++|| +|+++|.+.+.+.+.|.++|++.+.+...++... +..+.+.+|.+++...+
T Consensus 326 l~~l~~~~-----l~~k~~~~f~----t~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l 396 (402)
T 1e5d_A 326 LQYIKGLR-----PQNKIGGAFG----SFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARAL 396 (402)
T ss_dssp HHHHHHTC-----CCSCEEEEEE----EESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcc-----cCCCEEEEEE----cCCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 99998744 8899999999 5788999999999999999999887544454433 34466778888887776
Q ss_pred HH
Q 007547 240 DQ 241 (599)
Q Consensus 240 ~~ 241 (599)
++
T Consensus 397 ~~ 398 (402)
T 1e5d_A 397 KA 398 (402)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 55
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.52 E-value=1.4e-13 Score=132.23 Aligned_cols=149 Identities=14% Similarity=0.029 Sum_probs=113.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-hhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKA-RYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~-~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F 161 (599)
|++|+|+|+|+||||+++|+.|++.+.+ . |++++++++.+.+.++ +.+++.+||++||| .|.+|..++.|
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~--g~~v~~~~l~~~~~~~------l~~aD~ii~gsP~y-~g~~~~~lk~f 74 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLE--GTEVRLKHVDEATKED------VLWADGLAVGSPTN-MGLVSWKMKRF 74 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTST--TEEEEEEETTTCCHHH------HHHCSEEEEEEECB-TTBCCHHHHHH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcC--CCeEEEEEhhhCCHHH------HHhCCEEEEEeCcc-CCcCCHHHHHH
Confidence 6799999999999999999999999997 7 8889999999887655 88999999999999 99999999999
Q ss_pred HHHHhcCCCCCCCCCCcEEEEEee-cCcchhHHHHHHHHHHHHHHHCCCeEEec------cee------ecCCCC---cH
Q 007547 162 YKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVP------LGL------GDDDQC---IE 225 (599)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~------~g~------~D~~~~---~e 225 (599)
++++.... ...++++++++||. |+.. +.+....+.+.+.|..+|+..+.. ... .....+ ..
T Consensus 75 ld~~~~~~--~~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~ 151 (188)
T 2ark_A 75 FDDVLGDL--WGEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEK 151 (188)
T ss_dssp HHHTGGGT--TTSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHH
T ss_pred HHHHhhhh--HHHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHH
Confidence 99987510 01288999999998 4432 234556677888888899876532 111 011112 33
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 007547 226 DDFTAWRELVWPELDQLL 243 (599)
Q Consensus 226 ~~~~~W~~~l~~~L~~~~ 243 (599)
+.+.+|.+.+...++.+.
T Consensus 152 ~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 152 EACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 556678888877776653
No 56
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.51 E-value=2e-14 Score=154.45 Aligned_cols=145 Identities=12% Similarity=-0.014 Sum_probs=115.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
+++++|+|+|+||||+++|+.|++.+.+. |++++++++.+.+..+ +..++.+++.+||++||| .|.+|..++.|+
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~--g~~v~~~~l~~~~~~~--~~~~l~~~D~iiigsP~y-~~~~~~~~k~fl 330 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARST--GCETVLLEMTSSDITK--VALHTYDSGAVAFASPTL-NNTMMPSVAAAL 330 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEEGGGCCHHH--HHHHHHTCSEEEEECCCB-TTBCCHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhC--CCeEEEEEcCcCCHHH--HHHHHHhCCEEEEEcCcc-CcCchHHHHHHH
Confidence 68999999999999999999999999987 8889999998877643 455688999999999999 666666699999
Q ss_pred HHHhcCCCCCCCC-CCcEEEEEeecCcchhHHHHHHHHHHHHHHH-CCCeEEecc-eeecCCC--CcHHHHHHHHHHHHH
Q 007547 163 KWFTEGNDRGPWL-QQLKFGVFGLGNRQYEHFNKIGIVLDEELCK-QGGARLVPL-GLGDDDQ--CIEDDFTAWRELVWP 237 (599)
Q Consensus 163 ~~L~~~~~~~~~l-~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~-lGa~~i~~~-g~~D~~~--~~e~~~~~W~~~l~~ 237 (599)
+++.... + +++++++||.|. +.+.+.+.+.+.|+. +|++.+.+. ..+.... +..+.+.+|.+++..
T Consensus 331 d~l~~~~-----~~~~K~~~~~~t~g----~~~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~~ 401 (414)
T 2q9u_A 331 NYVRGLT-----LIKGKPAFAFGAFG----WSNRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGK 401 (414)
T ss_dssp HHHHHHT-----TTTTSBEEEEEEES----SSCCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhc-----ccCCCEEEEEEecC----CCchhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 9997633 6 899999999654 346678899999999 999987653 3333322 234566677777766
Q ss_pred HHHH
Q 007547 238 ELDQ 241 (599)
Q Consensus 238 ~L~~ 241 (599)
.+..
T Consensus 402 ~~~~ 405 (414)
T 2q9u_A 402 RAIA 405 (414)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 57
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.51 E-value=1.9e-14 Score=153.85 Aligned_cols=147 Identities=17% Similarity=0.059 Sum_probs=115.1
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHH
Q 007547 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (599)
+.+++++|+|+|+||||+++|+.|++.+.+. |++++++++.+.+..+ +..++.+++.+||++||| .|..|..++.
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~--g~~v~~~~~~~~~~~~--~~~~l~~~d~iiigsP~y-~~~~~~~~k~ 328 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSE--GVDVRVYCLHEDDRSE--IVKDILESGAIALGAPTI-YDEPYPSVGD 328 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTT--TCEEEEEETTTSCHHH--HHHHHHTCSEEEEECCEE-TTEECTHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhC--CCeEEEEECCCCCHHH--HHHHHHHCCEEEEECccc-cccchHHHHH
Confidence 3568999999999999999999999999877 8899999999887653 556688999999999999 5666667999
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHHHHH
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l~~~ 238 (599)
|++++...... . ++++++++||+|. +.+.+.+.+.+.|+.+|++.+.+ ..++... ...+.+.+|.+++...
T Consensus 329 ~ld~l~~~~~~-~-l~~k~~~~~~~~g----~~~~a~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T 2ohh_A 329 LLMYLRGLKFN-R-TLTRKALVFGSMG----GNGGATGTMKELLAEAGFDVACE-EEVYYVPTGDELDACFEAGRKLAAE 401 (404)
T ss_dssp HHHHHHHHCGG-G-TCCEEEEEEEEES----SSCCHHHHHHHHHHHTTEEEEEE-EEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccc-c-cCCCEEEEEEecC----CCChhHHHHHHHHHHCCCEEEeE-EEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 99998753311 1 5899999999654 34677899999999999998876 3333322 3345666777766544
Q ss_pred H
Q 007547 239 L 239 (599)
Q Consensus 239 L 239 (599)
+
T Consensus 402 ~ 402 (404)
T 2ohh_A 402 I 402 (404)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.50 E-value=2.1e-13 Score=131.58 Aligned_cols=128 Identities=15% Similarity=0.024 Sum_probs=103.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCch-------------HHHhhhccCCeEEEEeecC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-------------QYEEKLKKETLAFFMVATY 149 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~-------------~~~~~l~~~~~vif~~sTy 149 (599)
|++|+|+|+|.+|||+.+|+.|++.+.+. |++++++++.+...... ....++.+++.+||++|||
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 82 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQG--GFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR 82 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhC--CCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh
Confidence 57999999999999999999999999987 88999999987411100 0145588999999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
.|.+|..++.|++++..... ...++++++++|+.+...++.++.+.+.+.+.|..+|++.+.+
T Consensus 83 -~~~~~~~lk~~ld~~~~~~~-~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 83 -FGNMASPLKYFLDGTSSLWL-TGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp -TTBCCHHHHHHHHTCHHHHH-HTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred -ccCccHHHHHHHHHHHHHhh-ccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 68899999999999854200 0127899999999877766566778899999999999988764
No 59
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.43 E-value=1e-12 Score=126.54 Aligned_cols=127 Identities=18% Similarity=0.056 Sum_probs=99.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-hhCCCeEEEEeCCCCCCCch-----------H--HHhhhccCCeEEEEeec
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKA-RYEKAAVKVVDLDDYAMDDE-----------Q--YEEKLKKETLAFFMVAT 148 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~-~~~g~~v~v~dl~d~~~~~~-----------~--~~~~l~~~~~vif~~sT 148 (599)
|++|+|+|+|.+|||+++|+.|++.+.+ . |++++++++.+...... . -..++.+++.+||++||
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 78 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVD--GAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPT 78 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTST--TCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEE
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcC--CCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeCh
Confidence 4689999999999999999999999997 7 88999999987521100 0 04458899999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 149 yG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
| .|.+|..++.|++++..... ...++++++++|+.+... +....+.+.+...|..+|++.+.+
T Consensus 79 y-~~~~~~~lk~~ld~~~~~~~-~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~ 141 (198)
T 3b6i_A 79 R-FGNMSGQMRTFLDQTGGLWA-SGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPI 141 (198)
T ss_dssp E-TTEECHHHHHHHTTCHHHHH-HTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCC
T ss_pred h-cCCchHHHHHHHHHhhhhhh-hcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECC
Confidence 9 99999999999998753100 012789999999986554 445567788888999999987753
No 60
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.40 E-value=2.8e-12 Score=125.11 Aligned_cols=155 Identities=15% Similarity=0.068 Sum_probs=117.6
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCC--------------------CC-CchHHHhhhccCC
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY--------------------AM-DDEQYEEKLKKET 140 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~--------------------~~-~~~~~~~~l~~~~ 140 (599)
.+++|+|+|+|.+|||+.+|+.|++.+.+. |++++++|+.+. +. .. ...++..++
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~l~~aD 80 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAA--GAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEA--TPADLEWAE 80 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBC--CHHHHHHCS
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcC--CCEEEEEeccccccchhhhcccccccccccccchhHH--HHHHHHHCC
Confidence 468999999999999999999999999987 899999999875 32 22 456688999
Q ss_pred eEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecc-----
Q 007547 141 LAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL----- 215 (599)
Q Consensus 141 ~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~----- 215 (599)
.+||++|+| .|.+|..++.|++++...-. ...++++++++|+.+...++....+...+...|..+|++.+.+.
T Consensus 81 ~ii~gsP~y-~~~~~~~lk~~ld~~~~~~~-~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~ 158 (211)
T 1ydg_A 81 AIVFSSPTR-FGGATSQMRAFIDTLGGLWS-SGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEV 158 (211)
T ss_dssp EEEEEEEEE-TTEECHHHHHHHHTTHHHHH-TTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCSHH
T ss_pred EEEEEcCcc-ccCccHHHHHHHHHhccccc-cccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCCCCCChh
Confidence 999999999 79999999999998753100 01288999999998766554456788899999999999877641
Q ss_pred ---------eeecC---C--C-CcHHHHHHHHHHHHHHHHHh
Q 007547 216 ---------GLGDD---D--Q-CIEDDFTAWRELVWPELDQL 242 (599)
Q Consensus 216 ---------g~~D~---~--~-~~e~~~~~W~~~l~~~L~~~ 242 (599)
+..+- . + +..+.+.+|.+.+...++.+
T Consensus 159 ~~~~~~~~~g~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~ 200 (211)
T 1ydg_A 159 IFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAKL 200 (211)
T ss_dssp HHHTTCCSSSCEEECCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCccceeecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1 1 23456667888887776653
No 61
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.39 E-value=2.9e-12 Score=123.60 Aligned_cols=154 Identities=10% Similarity=-0.052 Sum_probs=114.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC---------------chHHHhhhccCCeEEEEee
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------DEQYEEKLKKETLAFFMVA 147 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~---------------~~~~~~~l~~~~~vif~~s 147 (599)
+++|+|+|+| +|||+.+|+.+++.+.+. |++++++++.+. .. ......++.+++.+||++|
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~~--g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP 79 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEEA--GAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSP 79 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHHH--SCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEE
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHhC--CCEEEEEehhHh-CChhhhhccCCCcccccccccHHHHHhCCEEEEECC
Confidence 5799999999 999999999999999988 899999999876 10 0001456889999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEeccee----------
Q 007547 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL---------- 217 (599)
Q Consensus 148 TyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~---------- 217 (599)
+| .|.+|..++.|++++...-. ...++++++++|+.+...++....+.+.+.+.|..+|+..+.....
T Consensus 80 ~y-~~~~~~~lk~~ld~~~~~~~-~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 157 (199)
T 2zki_A 80 TR-YGNMAGGLKTFLDTTAILWK-DNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGIPELFQTTTG 157 (199)
T ss_dssp CB-TTBCCHHHHHHHHTTHHHHH-TTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCCTTCSTHHHHCSSS
T ss_pred cc-ccCccHHHHHHHHHhhhccc-ccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCCCcCCccccccccC
Confidence 99 69999999999999742100 0128899999999766555444667889999999999987754311
Q ss_pred ------ecC----CC--CcHHHHHHHHHHHHHHHHHh
Q 007547 218 ------GDD----DQ--CIEDDFTAWRELVWPELDQL 242 (599)
Q Consensus 218 ------~D~----~~--~~e~~~~~W~~~l~~~L~~~ 242 (599)
++- .. +..+...+|.+.+...++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~~~l 194 (199)
T 2zki_A 158 GGPYGATHLGSKEELDEMERKIARFQGKRITEVAKAI 194 (199)
T ss_dssp CCSSCCCCBSSCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 11 23455667888887776654
No 62
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.39 E-value=6e-13 Score=122.84 Aligned_cols=124 Identities=18% Similarity=0.290 Sum_probs=86.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCC----CCCCChhH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYG----DGEPTDNA 158 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG----~G~~p~na 158 (599)
++..+|+|+|.||||++|+++|.. +. .+ +++. +.++ +..++.+|+++|||| .|+.|+.+
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~------~~--~~-I~~~--~~~~------~~~~ep~vlv~PTYg~g~~~G~vP~~v 82 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGL------PA--VR-IPLN--ERER------IQVDEPYILIVPSYGGGGTAGAVPRQV 82 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCS------CC--EE-CCSS--TTCC------CCCCSCEEEEEECCTTSSSSSSSCHHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCC------cc--cc-cccc--cCcc------cccCCCEEEEEeccCCCCcCCcCcHHH
Confidence 455689999999999999999832 11 22 2333 1222 456678999999999 59999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecCCC--CcHHHHHHHHHHH
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELV 235 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~~l 235 (599)
.+|++.+.+ .++.++|+|.||++| +.||.+++.+.+++.. ..+ ...+-.. .+.+.+.+|.+++
T Consensus 83 ~dFl~~~~n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~v---P~l---~kfEL~Gt~eDv~~v~~~~~~~ 148 (153)
T 3n3a_C 83 IRFLNDEHN--------RALLRGVIASGNRNFGEAYGRAGDVIARKCGV---PWL---YRFELMGTQSDIENVRKGVTEF 148 (153)
T ss_dssp HHHHTSHHH--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEE---EEEETTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhcc--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhCC---CeE---EEEeCCCCHHHHHHHHHHHHHH
Confidence 999876543 357899999999998 9999999999999852 222 2222222 2345556666666
Q ss_pred HH
Q 007547 236 WP 237 (599)
Q Consensus 236 ~~ 237 (599)
|.
T Consensus 149 ~~ 150 (153)
T 3n3a_C 149 WQ 150 (153)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 63
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.31 E-value=1.5e-11 Score=118.68 Aligned_cols=122 Identities=20% Similarity=0.146 Sum_probs=95.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCC-CCCchHHHhhhccCCeEEEEeecCCCCCCChhHHH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~-~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (599)
.+++|+|+|+|.||||+++|+.|++.+.+. .+++.++ +.. +....++.+++.+||++||| .|.+|..++.
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~~l~~~-------~~~v~~~~~~~-~~~~~~l~~~D~ii~gsP~y-~g~~~~~~k~ 75 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEAT-------LHAIDAEGNLS-EDGWAALDAADAIIFGTPTY-MGGPSWQFKK 75 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCE-------EEECCTTSCCC-HHHHHHHHHCSEEEEEEEEE-TTEECHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHhhhc-------ceEeeecCCCC-HhHHHHHHHCCEEEEEeCcc-CCCccHHHHH
Confidence 367899999999999999999999999754 2344443 111 12345688999999999999 6999999999
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
|++++...-. ...++++++++|+.+.+.++.+..+...+...|...|+..+.
T Consensus 76 fld~~~~~~~-~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg 127 (193)
T 3d7n_A 76 FADASSKPWF-SAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVS 127 (193)
T ss_dssp HHHHTHHHHH-TTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHhhhhcc-ccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 9999862000 012889999999998777766778889999999999988654
No 64
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.30 E-value=1.5e-11 Score=115.48 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=90.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-----------------------hHHHhhhccC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------------------EQYEEKLKKE 139 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-----------------------~~~~~~l~~~ 139 (599)
+++++|+|.|+||||+++|+.|++.+... -+++.+...|+..+ .....++.++
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~~----~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGAD----LYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCE----EEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCCC----eEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 56899999999999999999999988532 12222222221100 0012237789
Q ss_pred CeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEee-cCcchhHHHHHHHHHHHHHHHCCCeEEecceee
Q 007547 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (599)
Q Consensus 140 ~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~ 218 (599)
+.+||++||| .|.+|..+..|++.+ . ++|+++++|+. |++. +..+.+.+.+.|. |++.+ +-..+
T Consensus 80 d~iilG~P~~-~g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~~---~g~~~~~l~~~l~--~~~~~-~g~~~ 144 (162)
T 3klb_A 80 EVLFVGFPVW-WYIAPTIINTFLESY---D-----FAGKIVVPFATSGGSG---IGNCEKNLHKAYP--DIVWK-DGKLL 144 (162)
T ss_dssp SEEEEEEECB-TTBCCHHHHHHHHTS---C-----CTTCEEEEEEECSSCC---SHHHHHHHHHHCT--TSEEC-CCEEC
T ss_pred CEEEEEcccc-cCCCCHHHHHHHHhc---C-----CCCCEEEEEEEeCCCC---ccHHHHHHHHHcC--CCEee-cceEE
Confidence 9999999999 689999888887764 2 88999999995 3322 3467788888875 56643 32222
Q ss_pred cCCCCcHHHHHHHHHHH
Q 007547 219 DDDQCIEDDFTAWRELV 235 (599)
Q Consensus 219 D~~~~~e~~~~~W~~~l 235 (599)
.. ...++++.+|.+++
T Consensus 145 ~g-~~~~~~v~~W~~~~ 160 (162)
T 3klb_A 145 NG-QITRDLVTEWFEKI 160 (162)
T ss_dssp CS-CCCHHHHHHHHHHT
T ss_pred eC-CCCHHHHHHHHHHh
Confidence 22 34689999998764
No 65
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.29 E-value=1e-11 Score=120.23 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=99.3
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHH-HHhhhCCCeEEEEeCCCCCCC-----------chHHHhhhccCCeEEEEeec
Q 007547 83 KTKVTVFYGTQ--TGTAEGFAKALAEE-IKARYEKAAVKVVDLDDYAMD-----------DEQYEEKLKKETLAFFMVAT 148 (599)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~-l~~~~~g~~v~v~dl~d~~~~-----------~~~~~~~l~~~~~vif~~sT 148 (599)
|++|+|+|||. +|+|+.+|+.+++. +.+. |.+++++|+.+++.. -..+..++..++.+||++|+
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~--g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~ 79 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARS--DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHS--SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHC--CCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCc
Confidence 56899999997 79999999999999 9887 888999999887531 12244567889999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 149 yG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
| +|..|..++.|++++.... ++++++++|+.|... ++++.....+...|..+|++.+.+
T Consensus 80 y-~~~~p~~lK~~ld~l~~~~-----~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~~ 138 (197)
T 2vzf_A 80 Y-KASYTGLLKAFLDILPQFA-----LAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVVQ 138 (197)
T ss_dssp B-TTBCCHHHHHHHTTSCTTT-----TTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEECC
T ss_pred c-CCCCCHHHHHHHHhccccc-----cCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEeccc
Confidence 9 7889999999999986433 899999999987553 334433347889999999988754
No 66
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.29 E-value=3.1e-11 Score=114.56 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=92.3
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCch-----------------------HHHhhhc
Q 007547 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-----------------------QYEEKLK 137 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~-----------------------~~~~~l~ 137 (599)
..+++++|+|.|.||||+++|+.|++.+... -+++.+...|...+. ....++.
T Consensus 11 ~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d----~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 11 HSNSKILVAYFSATGTTARAAEKLGAAVGGD----LYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTCE----EEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHhCCC----eEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 3578999999999999999999999988422 122233333221000 0013477
Q ss_pred cCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEeccee
Q 007547 138 KETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 217 (599)
Q Consensus 138 ~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~ 217 (599)
+++.+||++||| .|.+|..+..|++.+ . ++|+++++|+.+.. ..++.+.+.+.+.|. |++. .+-..
T Consensus 87 ~yD~iilg~Pvy-~g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~--~~~g~a~~~l~~~l~--~~~~-~~g~~ 152 (171)
T 4ici_A 87 TYDVVFIGYPIW-WDLAPRIINTFIEGH---S-----LKGKTVVPFATSGG--SSIGNSATVLKKTYP--DLNW-KEGRL 152 (171)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHHS---C-----CTTSEEEEEEECSS--CCSHHHHHHHHHHST--TSEE-CCCEE
T ss_pred HCCEEEEecccc-cCCchHHHHHHHHHc---C-----CCcCEEEEEEecCC--CCcchHHHHHHHHcC--CCee-ccCeE
Confidence 899999999999 588888888888876 2 78999999996321 124667788888876 5553 33233
Q ss_pred ecCCCCcHHHHHHHHHHH
Q 007547 218 GDDDQCIEDDFTAWRELV 235 (599)
Q Consensus 218 ~D~~~~~e~~~~~W~~~l 235 (599)
.+. ..++++..|.+++
T Consensus 153 ~~~--~~~~~i~~Wl~~~ 168 (171)
T 4ici_A 153 LNR--TDEKAIRAWLDVI 168 (171)
T ss_dssp CSS--CCHHHHHHHHHHH
T ss_pred ecC--CCHHHHHHHHHHh
Confidence 333 3578899998765
No 67
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.28 E-value=1.4e-12 Score=131.31 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=86.2
Q ss_pred ChHHHHHHhcCC----CCCceeecCCCCCCCCCEEEEEEEEEEecCCCCCcccCchhHHHhhcCCCCCCCCceEEEEEee
Q 007547 457 PIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (599)
Q Consensus 457 p~~~ll~~l~p~----l~pR~YSIsSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~ 532 (599)
..+|++.+..|. ...|.|||+|.+. ++++|.+.++. ..|.+|+||+++++| +.|.|..|
T Consensus 40 ~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~--------~~G~~S~~l~~l~~G------d~l~v~gP 102 (252)
T 2gpj_A 40 QESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHD--------TDGPASSWAKTAQVG------ELIQIGGP 102 (252)
T ss_dssp CTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCS--------SCCHHHHHHHHCCTT------CEEEEEEE
T ss_pred CCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeC--------CCCcHHHHHhhCCCC------CEEEEecC
Confidence 346666665353 4579999999764 56777765521 138999999999999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccc
Q 007547 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRI 592 (599)
Q Consensus 533 ~~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~l 592 (599)
.|.|.++.+ ..+++|||+||||+|+++++++... ..+..+|+++|+.+ |..
T Consensus 103 ~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~-------~~~~~~~~~~~~~~-d~~ 153 (252)
T 2gpj_A 103 GLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN-------NAVGYAVIEVLSEA-DIQ 153 (252)
T ss_dssp ECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT-------TCEEEEEEEESSGG-GCC
T ss_pred CCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC-------CCcEEEEEEECCHH-Hhh
Confidence 999999754 5799999999999999999998732 24778999999876 543
No 68
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.16 E-value=6.7e-10 Score=106.81 Aligned_cols=157 Identities=10% Similarity=0.030 Sum_probs=116.0
Q ss_pred CCeEEEEEECCC---chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC---------------------------chHH
Q 007547 83 KTKVTVFYGTQT---GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------------------DEQY 132 (599)
Q Consensus 83 ~~~v~I~YgSqt---Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~---------------------------~~~~ 132 (599)
|++|+|+|||.. |+|+.+|+.+++.+.++.++.+++++|+.+.+.. -..+
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 478999999998 9999999999999998721388999999876431 0124
Q ss_pred HhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCcEEEEEeecCcchhH--HHHHHHHHHH
Q 007547 133 EEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYEH--FNKIGIVLDE 202 (599)
Q Consensus 133 ~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~--f~~~~k~ld~ 202 (599)
..++..++.+||++|+| .+.+|..++.|++++..... ....++++++++|+.+...|++ |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 56788999999999999 88899999999999874210 0023789999999986666643 5667788888
Q ss_pred HHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHH
Q 007547 203 ELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 203 ~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~ 241 (599)
.|..+|++.+.......... .++..++|.++....+.+
T Consensus 160 ~l~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 197 (201)
T 1t5b_A 160 FLGFIGITDVNFVFAEGIAY-GPEVAAKAQADAKAAIDS 197 (201)
T ss_dssp HHHHTTCCCEEEEEECCGGG-CHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEEEEEecccC-ChHHHHHHHHHHHHHHHH
Confidence 99999998775443322222 345557787776666554
No 69
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.16 E-value=1.2e-10 Score=108.01 Aligned_cols=126 Identities=16% Similarity=0.216 Sum_probs=85.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCC-CeEEEEeCC-CCCCCc--------------------hHHHhhhccCC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEK-AAVKVVDLD-DYAMDD--------------------EQYEEKLKKET 140 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g-~~v~v~dl~-d~~~~~--------------------~~~~~~l~~~~ 140 (599)
+++++|+|.|+||||+++|+.|++++... + +++++ .. .|+.+. .....++.+++
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~--~~~~i~~--~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d 78 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDS--ELKEVKV--SEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYD 78 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTC--EEEECBC--CTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCS
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCC--CEEEEEc--CCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCC
Confidence 46899999999999999999999988532 1 11221 11 122100 00122377899
Q ss_pred eEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecC
Q 007547 141 LAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (599)
Q Consensus 141 ~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~ 220 (599)
.+||++||| .|.+|..+..|++.+.. +.++.+++|+.|.+.+ ..+.+.+.+.|. +++.+ + |..-+
T Consensus 79 ~iilG~P~~-~g~~~~~~~~fl~~~~~-------~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~-~-g~~~~ 143 (151)
T 3edo_A 79 LILIGSPVW-SGYPATPIKTLLDQMKN-------YRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVI-G-VARDD 143 (151)
T ss_dssp EEEEEEEEE-TTEECTHHHHHHHHTTT-------CCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEE-E-EEETT
T ss_pred EEEEEccee-cccccHHHHHHHHhchh-------cCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeee-c-ccccH
Confidence 999999999 69999999999998753 6789999999765543 456677777775 44433 2 22221
Q ss_pred CCCcHHHHHHHH
Q 007547 221 DQCIEDDFTAWR 232 (599)
Q Consensus 221 ~~~~e~~~~~W~ 232 (599)
.++.+|.
T Consensus 144 -----~~~~~w~ 150 (151)
T 3edo_A 144 -----SEVDKWS 150 (151)
T ss_dssp -----TTHHHHH
T ss_pred -----HHHHHHh
Confidence 3588885
No 70
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.02 E-value=4.7e-09 Score=104.69 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=115.0
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC---------------------Cc-hHHHhhhcc
Q 007547 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---------------------DD-EQYEEKLKK 138 (599)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~---------------------~~-~~~~~~l~~ 138 (599)
|++|+|+|||.. |+|+.+|+.+++.+.+.. |.+++++|+.+.+. ++ ..+..++..
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~-g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~ 79 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRN-NVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLE 79 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHS-CCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhc-CCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHH
Confidence 468999999996 999999999999998653 57899999887632 11 235566889
Q ss_pred CCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceee
Q 007547 139 ETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (599)
Q Consensus 139 ~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~ 218 (599)
++.+||++|+| .|.+|..++.|++++.... ....++|+++++|+.+... ....+.+.+...|..+|++.+......
T Consensus 80 AD~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~~ 155 (242)
T 1sqs_A 80 SDIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSIT 155 (242)
T ss_dssp CSEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEEe
Confidence 99999999999 8899999999999985421 1124899999999864322 123567788999999999988765443
Q ss_pred cC-CCCcHHHHHHHHHHHHHHHHH
Q 007547 219 DD-DQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 219 D~-~~~~e~~~~~W~~~l~~~L~~ 241 (599)
+. .+...+.+.++.+.+...+..
T Consensus 156 ~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 156 NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHHHHHHHHHHHHHHHHhc
Confidence 33 224556777788777766654
No 71
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=98.99 E-value=2.7e-09 Score=102.53 Aligned_cols=124 Identities=10% Similarity=0.147 Sum_probs=98.3
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC------------chHHHhhhccCCeEEEEeec
Q 007547 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD------------DEQYEEKLKKETLAFFMVAT 148 (599)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~------------~~~~~~~l~~~~~vif~~sT 148 (599)
+++|+|+|||.. |+|+.+|+.+++.+. . |.+++++|+.++..- -..+..++..++.+||++|+
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~-~--g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~ 82 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVP-P--GMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE 82 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCC-T--TCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhcc-C--CCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccc
Confidence 469999999985 999999999999987 5 788999999874321 12345668889999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 149 yG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
| .|.+|..++.|++++..... ..+++|++++|+.+...++ ...+...+...|..+|++.+.
T Consensus 83 y-~~~~p~~lK~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 83 Y-NYSMAGVLKNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp E-TTEECHHHHHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred c-ccCcCHHHHHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 9 77889999999999975310 2388999999998644443 235678889999999998876
No 72
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=98.96 E-value=7e-09 Score=99.26 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=97.0
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhh----CCCeEEEEeCCCCCCC--------------------c---hHHHh
Q 007547 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARY----EKAAVKVVDLDDYAMD--------------------D---EQYEE 134 (599)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~----~g~~v~v~dl~d~~~~--------------------~---~~~~~ 134 (599)
|+|+|+|||.. |+|+.+|+.+++.+.+.. +|.+++++|+.+.+.. + ..+..
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 58999999998 999999999999998642 2578888887653220 0 23556
Q ss_pred hhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 135 KLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 135 ~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
++..++.+||++|+| .|.+|..++.|++++.. .++++++++|+.|... . ..+...+...|..+|++.+..
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~-~--~~~~~~l~~~l~~~G~~~~~~ 150 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHG-G--SKCNDQLQEVLHGLKMNVIGG 150 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTT-T--HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcc-h--hhHHHHHHHHHHHCCCEEcce
Confidence 788999999999999 78889999999999864 2889999999987642 2 356788999999999988764
Q ss_pred c
Q 007547 215 L 215 (599)
Q Consensus 215 ~ 215 (599)
.
T Consensus 151 ~ 151 (191)
T 1t0i_A 151 V 151 (191)
T ss_dssp E
T ss_pred e
Confidence 3
No 73
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=98.95 E-value=4.8e-10 Score=104.87 Aligned_cols=65 Identities=11% Similarity=-0.047 Sum_probs=50.1
Q ss_pred eE-EEEEeeCCCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhc
Q 007547 525 SW-APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQ 598 (599)
Q Consensus 525 ~~-v~i~~~~~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~ 598 (599)
+. +.|..|.|+|.... ..+|++|||+||||||+++++++... ++ .+++|| |+|+++ |.+|++||+
T Consensus 5 d~vl~v~gP~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~---~~---~~v~l~-g~r~~~-d~~~~~el~ 70 (158)
T 3lrx_A 5 DSLLNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQE---IG---NDVTTL-HVTFEP-MVILKEELE 70 (158)
T ss_dssp -------CCCCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHH---HT---CEEEEE-EECBGG-GCCSHHHHH
T ss_pred CEeeEEECCCCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHh---cC---CcEEEE-EeCCHH-HhhHHHHHH
Confidence 88 59999999764432 46899999999999999999998875 23 479999 999998 999999985
No 74
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=98.93 E-value=1.4e-09 Score=102.85 Aligned_cols=116 Identities=9% Similarity=0.165 Sum_probs=88.8
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC-----C--------chHHHhhhccCCeEEEEeec
Q 007547 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-----D--------DEQYEEKLKKETLAFFMVAT 148 (599)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~-----~--------~~~~~~~l~~~~~vif~~sT 148 (599)
|+|+|+|||.+ |+|+.+|+.+++.+.. +++++.+++. . -..+..++.+++.+||++|+
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-------~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~ 73 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-------DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-------EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-------eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCC
Confidence 57999999999 9999999999998753 3456554432 1 02244567889999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEee-cCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 149 yG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
| +|.+|..++.|++|+.... ++||.+++|+. |.. ..+..+...+...|..+|+..+.+
T Consensus 74 y-~~~~p~~lk~~lD~l~~~~-----~~gK~~~~~~~sgg~--~g~~~a~~~l~~~l~~~g~~~v~~ 132 (174)
T 3gfs_A 74 Y-HSGMSGALKNALDFLSSEQ-----FKYKPVALLAVAGGG--DGGINALNNMRTVMRGVYANVIPK 132 (174)
T ss_dssp S-SSSCCHHHHHHHHTCCHHH-----HTTCEEEEEEECCST--TCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred c-CCCCCHHHHHHHHHhCHhh-----hCCCcEEEEEECCCC--hhHHHHHHHHHHHHHHcCCEEecc
Confidence 9 9999999999999987532 88999999994 322 123567889999999999987654
No 75
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=98.89 E-value=2.8e-08 Score=99.67 Aligned_cols=127 Identities=12% Similarity=0.054 Sum_probs=100.9
Q ss_pred CCCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc---------hHHHhhhccCCeEEEEeecCC
Q 007547 82 GKTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD---------EQYEEKLKKETLAFFMVATYG 150 (599)
Q Consensus 82 ~~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~---------~~~~~~l~~~~~vif~~sTyG 150 (599)
.+++|+|+|||.. |+|+.+|+.+++.+.+. |++++++|+.+++..+ ..+..++...+.+||++|+|
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~--g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y- 109 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFF--GAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER- 109 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHT--TCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS-
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhC--CCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC-
Confidence 5689999999986 99999999999999887 8999999998876211 23566788999999999999
Q ss_pred CCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 151 ~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
+|.+|..++.|++|+.........++||++++++.+-.. +. ..+...+...|..+|+..+.
T Consensus 110 n~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg-~~a~~~Lr~~l~~lg~~~v~ 170 (247)
T 2q62_A 110 HGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QS-FNAVNQMRILGRWMRMITIP 170 (247)
T ss_dssp SSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CC-CHHHHHHHHHHHHTTCEECS
T ss_pred CCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cH-HHHHHHHHHHHHHCCCEEeC
Confidence 999999999999999653211134899999999984222 21 14567888899999998763
No 76
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=98.89 E-value=2.5e-10 Score=108.15 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=54.9
Q ss_pred EEeeCCCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhc---CCCCCCEEEEEeccCCCcccc-hHHhhc
Q 007547 529 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD---GAQLGPALLFFGCRNRRMVRI-FCYLLQ 598 (599)
Q Consensus 529 i~~~~~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~---g~~~g~~~Lf~G~R~~~~D~l-y~~El~ 598 (599)
|.+|.|.|.++....+|+||||+|||||||++++++......+ +...++++||||+|+.+ +++ |++||+
T Consensus 3 v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~-~~~w~~~~l~ 75 (186)
T 3a1f_A 3 VDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTH-AFEWFADLLQ 75 (186)
T ss_dssp TTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTT-TTHHHHHHHH
T ss_pred EECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcc-hHHHHHHHHH
Confidence 3467787776544568999999999999999999999864321 12457899999999998 887 999885
No 77
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=98.83 E-value=1.1e-07 Score=92.07 Aligned_cols=157 Identities=8% Similarity=0.041 Sum_probs=110.2
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeEEEEeCC--CCCCCc---------------------------
Q 007547 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLD--DYAMDD--------------------------- 129 (599)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~v~v~dl~--d~~~~~--------------------------- 129 (599)
|++|+|+|||.. |+|+.+|+.+.+.+.+..++.+++++|+. +.+...
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 468999999997 99999999999999987113889999998 654211
Q ss_pred -----hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCcEEEEEeecCcchhHHHHH
Q 007547 130 -----EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYEHFNKI 196 (599)
Q Consensus 130 -----~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~f~~~ 196 (599)
.++.+++...+.+||++|+| .+.+|..++.|++++..... ....+++++++++......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 12445678899999999999 99999999999999864210 01237899999997643445432334
Q ss_pred HHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHH
Q 007547 197 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 197 ~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~ 241 (599)
...+...|.-+|++.+.......... .++...+|.++....+.+
T Consensus 160 ~~~l~~~~~~~G~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 203 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDGLFIEGIDH-FPDRAEELLNTAMTKATE 203 (208)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTT-CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEccccC-CHHHHHHHHHHHHHHHHH
Confidence 56777788889998775543332222 235566676655544443
No 78
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=98.82 E-value=2.9e-09 Score=97.73 Aligned_cols=64 Identities=11% Similarity=-0.044 Sum_probs=50.8
Q ss_pred EEEEeeCCCCcCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHhhcCCCCCCEEEEEeccCCCcccchHHhhcC
Q 007547 527 APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMVRIFCYLLQL 599 (599)
Q Consensus 527 v~i~~~~~~F~Lp~~~~~piImIg~GTGIAPfrsflqer~~~~~~g~~~g~~~Lf~G~R~~~~D~ly~~El~~ 599 (599)
+.|.+|.|+|.... ..+|++|||+||||||+++++++... ++ .++.|+ |+|+++ |.+|++||++
T Consensus 3 ~~v~GP~G~~~~~~-~~~~~llIaGG~GiaPl~sm~~~l~~---~~---~~v~l~-g~R~~~-~~~~~~el~~ 66 (142)
T 3lyu_A 3 LNVAGPLGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQE---IG---NDVTTL-HVTFEP-MVILKEELEK 66 (142)
T ss_dssp ----CCCSCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHH---TT---CEEEEE-EEEEGG-GCCSHHHHHT
T ss_pred eeeeCCCCCCccCC-CCCeEEEEECcCcHHHHHHHHHHHHh---cC---CcEEEE-EeCCHH-HhhHHHHHHH
Confidence 46788999776543 36899999999999999999998775 23 479999 999998 9999999863
No 79
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.80 E-value=7.7e-08 Score=97.99 Aligned_cols=127 Identities=11% Similarity=0.021 Sum_probs=100.7
Q ss_pred cCCCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc----------hHHHhhhccCCeEEEEeec
Q 007547 81 AGKTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD----------EQYEEKLKKETLAFFMVAT 148 (599)
Q Consensus 81 ~~~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~----------~~~~~~l~~~~~vif~~sT 148 (599)
..+++|+|+|||.. |+|+.+|+.+++.+.+. |++++++|+.+.+..+ .++.+++...+.+||++|+
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~--G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFF--GAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHT--TCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhC--CCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 35789999999986 99999999999999887 8999999998876211 2355667889999999999
Q ss_pred CCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 149 YGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 149 yG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
| +|..|..++.|++|+.........++||.+++++.+-.. +.. .+...+...|..+|+..+
T Consensus 134 Y-n~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 134 R-HGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp E-TTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEEC
T ss_pred c-ccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEe
Confidence 9 999999999999999653211134899999999984322 222 356788888989999876
No 80
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.70 E-value=2.1e-07 Score=89.52 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=98.7
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-----------hHHHhhhccCCeEEEEeecC
Q 007547 83 KTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATY 149 (599)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-----------~~~~~~l~~~~~vif~~sTy 149 (599)
|++|+|++||. .|+|+.+|+.+++.+. . |.+++++|+.++..-+ .++.+++...+.+||++|+|
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~--~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y 78 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-D--RAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY 78 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-T--SSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-C--CCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc
Confidence 57999999998 6999999999999996 4 7889999998764311 23567788999999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCC-----CCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecce
Q 007547 150 GDGEPTDNAARFYKWFTEGND-----RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (599)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~-----~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g 216 (599)
++..|..++.|++++..... ....++||++++++.+... .+..+...+...|..+|++.+....
T Consensus 79 -~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~~v 147 (192)
T 3fvw_A 79 -NYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQLT 147 (192)
T ss_dssp -TTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCE
T ss_pred -ccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeeccee
Confidence 89999999999999975311 0134899999999976542 1233557888899999998775543
No 81
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.70 E-value=1.3e-07 Score=89.35 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=87.2
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC-----------------Cc-hHHHhhhccCCeE
Q 007547 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-----------------DD-EQYEEKLKKETLA 142 (599)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~-----------------~~-~~~~~~l~~~~~v 142 (599)
+|+|+|+|+|.. |+|+.+|+.+++.+ +++++++.+.+. ++ ..+..++..++.+
T Consensus 3 mMkilii~~S~r~~g~t~~la~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i 75 (184)
T 1rli_A 3 AMKIAVINGGTRSGGNTDVLAEKAVQGF-------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHIL 75 (184)
T ss_dssp --CEEEEESSCSSCCHHHHHHHHHHTTT-------CCEEEEC-----------------------CHHHHHHHHHTCSEE
T ss_pred CcEEEEEECCCCCCccHHHHHHHHHcCC-------eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEE
Confidence 568999999965 99999999998754 355566655432 11 2355678899999
Q ss_pred EEEeecCCCCCCChhHHHHHHHHhcCCCCC------CCCCCcEEEEEeecCcchh-HHHHHHHHHHHHHHHCCCeEEecc
Q 007547 143 FFMVATYGDGEPTDNAARFYKWFTEGNDRG------PWLQQLKFGVFGLGNRQYE-HFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 143 if~~sTyG~G~~p~na~~F~~~L~~~~~~~------~~l~~~~~aVFGlGds~Y~-~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
||++|+| .|.+|..++.|++++....... ..++++++++|+.+..... .+..+.+.+...|..+|++.+...
T Consensus 76 i~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~~ 154 (184)
T 1rli_A 76 IFATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGYV 154 (184)
T ss_dssp EEEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceEE
Confidence 9999999 8999999999999875311100 1278999999997544211 234467888888999999877543
No 82
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=98.67 E-value=6.1e-07 Score=87.37 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=111.9
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC----------------------------chH
Q 007547 83 KTKVTVFYGTQTG---TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD----------------------------DEQ 131 (599)
Q Consensus 83 ~~~v~I~YgSqtG---tte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~----------------------------~~~ 131 (599)
|++|+|+|||..+ +|..+|+.+.+.+.+.++|.+++++|+.+.+.. -.+
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 5789999999876 599999999999988766788999998765311 013
Q ss_pred HHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCC-------CC-----CCCCCCcEEEEEee-cC-cchh-----H
Q 007547 132 YEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN-------DR-----GPWLQQLKFGVFGL-GN-RQYE-----H 192 (599)
Q Consensus 132 ~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~-------~~-----~~~l~~~~~aVFGl-Gd-s~Y~-----~ 192 (599)
+.+++...+.+||++|+| ++..|..++.|++++.... .. ...++||++.++.. |. ..|. .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 456688899999999999 9999999999999984321 11 12489999888876 42 2332 1
Q ss_pred HHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHH
Q 007547 193 FNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 193 f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~ 241 (599)
+......+...|.-+|.+.+.. .........+++.++|.++..+.+.+
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~-v~~~g~~~~~~~~~~~l~~a~~~~~~ 207 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTV-VAAEGEESGGRSFEDSCDEAEQRLLA 207 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEE-EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEE-EEEecccCCHHHHHHHHHHHHHHHHH
Confidence 2334567778888889988744 33333233466777787776665554
No 83
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=98.56 E-value=6.3e-07 Score=86.33 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=96.3
Q ss_pred CCCeEEEEEECCC--chHHHHHHHHHH----HHHhhhCCCeEEEEeCCCCCC----------C-c--hHHHhhhccCCeE
Q 007547 82 GKTKVTVFYGTQT--GTAEGFAKALAE----EIKARYEKAAVKVVDLDDYAM----------D-D--EQYEEKLKKETLA 142 (599)
Q Consensus 82 ~~~~v~I~YgSqt--Gtte~~A~~la~----~l~~~~~g~~v~v~dl~d~~~----------~-~--~~~~~~l~~~~~v 142 (599)
.+.+|+++.||.. |++..+|+.+.+ .+.++.+|++++++|+.+++. . + .++.+++...+.+
T Consensus 10 ~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~i 89 (191)
T 3k1y_A 10 HMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGL 89 (191)
T ss_dssp CSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEE
T ss_pred hhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEE
Confidence 4789999999975 889999999999 555542257888998876542 0 1 2466678889999
Q ss_pred EEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 143 FFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 143 if~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
||++|+| ++.+|..++.|++|+... .++||++++++.|.. +.+.......+...|..+|+..+-+
T Consensus 90 vi~sP~Y-~~~~~~~lK~~iD~~~~~-----~l~gK~~~~v~t~G~-~~~~~~~~~~L~~il~~lg~~vv~~ 154 (191)
T 3k1y_A 90 VVATPVF-KASYTGLFKMFFDILDTD-----ALTGMPTIIAATAGS-ARHSLVLDYALRPLLSYMRAVVVPT 154 (191)
T ss_dssp EEEEECB-TTBSCHHHHHHHHHSCTT-----TTTTCEEEEEEEESS-STTTTHHHHTHHHHHHHTTCEECSC
T ss_pred EEEcCcc-CCcCcHHHHHHHHHhhhh-----hcCCCEEEEEEeCCC-cchhhHHHHHHHHHHHHCCCEEcCc
Confidence 9999999 999999999999999753 289999999998643 2333333344788888999987644
No 84
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=98.53 E-value=1.9e-06 Score=84.68 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=113.1
Q ss_pred CCCeEEEEEECC------CchHHHHHHHHHHHHHhhhCCCeEEEEeCCC-CCCCchHHHhhhccCCeEEEEeecCCCCCC
Q 007547 82 GKTKVTVFYGTQ------TGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (599)
Q Consensus 82 ~~~~v~I~YgSq------tGtte~~A~~la~~l~~~~~g~~v~v~dl~d-~~~~~~~~~~~l~~~~~vif~~sTyG~G~~ 154 (599)
.|++|+|++||. .+.+..+++.+.+.+.+. |.++++.|+++ +|. +...+++...+.+||++|.| .+..
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~--g~ev~~~dL~~~~Dv--~~~~~~l~~aD~iv~~~P~y-~~~~ 98 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRES--GHQVKITTVDQGYDI--ESEIENYLWADTIIYQMPAW-WMGE 98 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHT--TCCEEEEEGGGCCCH--HHHHHHHHHCSEEEEEEECB-TTBC
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhC--CCEEEEEECCCccCH--HHHHHHHHhCCEEEEECChH-hccC
Confidence 478999999997 368899999999999887 88999999975 333 33677788999999999999 8999
Q ss_pred ChhHHHHHHHHhcC--C-----------------CCCCCCCCcEEEEEeecCcchhHH-------HH-----HHHHHHHH
Q 007547 155 TDNAARFYKWFTEG--N-----------------DRGPWLQQLKFGVFGLGNRQYEHF-------NK-----IGIVLDEE 203 (599)
Q Consensus 155 p~na~~F~~~L~~~--~-----------------~~~~~l~~~~~aVFGlGds~Y~~f-------~~-----~~k~ld~~ 203 (599)
|.-.+.|++.+... . ..+..|+||++.++-..+...++| +. ...-+...
T Consensus 99 p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~ 178 (218)
T 3rpe_A 99 PWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKA 178 (218)
T ss_dssp CHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHH
Confidence 99999999987431 1 112358999988876644432222 22 22234667
Q ss_pred HHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHHhc
Q 007547 204 LCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 243 (599)
Q Consensus 204 L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~~ 243 (599)
|.-+|.+.+-+....+... ++++++|.+++.+.|.+++
T Consensus 179 l~f~G~~~l~~~~~~g~~~--~~~~~~~~~~~~~~L~~~~ 216 (218)
T 3rpe_A 179 NQFLGMKPLPTFMCNDVIK--QPDIEGDIARYRQHLAENV 216 (218)
T ss_dssp HHHTTCEECCCEEECSTTT--SCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeceEEEeCCCC--hHHHHHHHHHHHHHHHHhc
Confidence 7788999876655554432 4578888888877777654
No 85
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=98.53 E-value=1.2e-06 Score=84.95 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=96.9
Q ss_pred CCeEEEEEEC--CCchHHHHHHHHHHHHHhhhCCCeEE-EEeCCCCCCCc------------hHHHhhhccCCeEEEEee
Q 007547 83 KTKVTVFYGT--QTGTAEGFAKALAEEIKARYEKAAVK-VVDLDDYAMDD------------EQYEEKLKKETLAFFMVA 147 (599)
Q Consensus 83 ~~~v~I~YgS--qtGtte~~A~~la~~l~~~~~g~~v~-v~dl~d~~~~~------------~~~~~~l~~~~~vif~~s 147 (599)
.++|++++|| ..++++.+|+.+++.+. . |++++ ++|+.++..-+ ..+.+++...+.+||++|
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~-~--g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP 82 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAP-E--GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCC-T--TEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHcc-C--CCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcC
Confidence 4689999999 66999999999998885 4 67888 88886653211 235566888999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 148 TyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
+| ++..|.-.+.|++|+.... ...++||++++++.+-..++.. .+...+...|..+|+..+.
T Consensus 83 ~Y-~~s~p~~LK~~iD~~~~~~--~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 83 EY-NYSVPGVLKNAIDWLSRVS--PQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp CB-TTBCCHHHHHHHHHHTTSS--SCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred cc-CCCcCHHHHHHHHHhcccC--CcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 99 9999999999999997621 2348999999999854444322 3567888889999998774
No 86
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=98.52 E-value=1.2e-06 Score=84.43 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=113.5
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC-------------------CchHHHhhhccCCeE
Q 007547 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-------------------DDEQYEEKLKKETLA 142 (599)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~-------------------~~~~~~~~l~~~~~v 142 (599)
|||+|++||.. +++..+|+.+.+.+ +. |.+++++|+.+.+. +-..+.+++...+.+
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~--g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SK--EHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CT--TSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cC--CCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEE
Confidence 68999999964 47899999999999 66 88999999976542 113456667889999
Q ss_pred EEEeecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCcEEEEEeecCcc--hhH--HHHHHHHHHHHHHHCCCe
Q 007547 143 FFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQ--YEH--FNKIGIVLDEELCKQGGA 210 (599)
Q Consensus 143 if~~sTyG~G~~p~na~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~--Y~~--f~~~~k~ld~~L~~lGa~ 210 (599)
||++|.| .+..|.-++.|++++..... ....++||++.++..+... |.. +......+...|.-+|++
T Consensus 78 V~~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~ 156 (196)
T 3lcm_A 78 IFIFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAIS 156 (196)
T ss_dssp EEEEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCC
T ss_pred EEECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999853210 0125899999998886655 421 111124556666678998
Q ss_pred EEecceeecCCCCcHHHHHHHHHHHHHHHHHhc
Q 007547 211 RLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 243 (599)
Q Consensus 211 ~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~~ 243 (599)
.+............++...+|.+++.....+++
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 157 PVKLTELTSIEKISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp CEEEEEECSTTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eeeEEEEeCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776555544444567888999998877777654
No 87
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=98.45 E-value=3.6e-06 Score=85.49 Aligned_cols=158 Identities=14% Similarity=-0.008 Sum_probs=108.4
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC---------------------------------
Q 007547 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM--------------------------------- 127 (599)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~--------------------------------- 127 (599)
||+|+|+|||.. |+|..+|+.+.+.+.+. |.+++++|+.+.+.
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~--g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKK--GWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHT--TCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhC--CCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 579999999987 68999999999999887 88999999987642
Q ss_pred --Cc-hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCcEEEEEeecCcc---hhH-
Q 007547 128 --DD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQ---YEH- 192 (599)
Q Consensus 128 --~~-~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~- 192 (599)
++ ....++|...+.+||++|.| .+..|..++.|++++..... ....++|+++.++...... |.+
T Consensus 80 ~~dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~ 158 (273)
T 1d4a_A 80 LSPDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQ 158 (273)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccc
Confidence 01 12333477899999999999 88999999999999854211 0134899999988764333 421
Q ss_pred -HH----HHHHHHH-HHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHHhc
Q 007547 193 -FN----KIGIVLD-EELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLL 243 (599)
Q Consensus 193 -f~----~~~k~ld-~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~~ 243 (599)
.+ .....+. ..|.-+|++.+.+..........++..++|.++....+.++.
T Consensus 159 g~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 215 (273)
T 1d4a_A 159 GIHGDMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIW 215 (273)
T ss_dssp BTTCCHHHHHHHHHTTTTGGGTCEECCCEEETTGGGSCHHHHHHHHHHHHHHHTTGG
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1222222 245667998775444333222345567777777777776654
No 88
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=98.42 E-value=4.2e-06 Score=82.74 Aligned_cols=160 Identities=15% Similarity=0.067 Sum_probs=112.3
Q ss_pred CCeEEEEEECCCc--hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC---------------------------------
Q 007547 83 KTKVTVFYGTQTG--TAEGFAKALAEEIKARYEKAAVKVVDLDDYAM--------------------------------- 127 (599)
Q Consensus 83 ~~~v~I~YgSqtG--tte~~A~~la~~l~~~~~g~~v~v~dl~d~~~--------------------------------- 127 (599)
.|+|+|++||... ++..+|+.+.+.+.+. |.+++++||.+.+.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~--g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 78 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQ--GCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRS 78 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHH--TCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCC
Confidence 3789999999865 4999999999999988 89999999976531
Q ss_pred --Cc-hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCcEEEEEeecCcc---hhH-
Q 007547 128 --DD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQ---YEH- 192 (599)
Q Consensus 128 --~~-~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~---Y~~- 192 (599)
++ ......+...+.+||++|.| .+..|.-++.|++++..... ....|+||++.++...... |..
T Consensus 79 ~~dd~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~ 157 (228)
T 3tem_A 79 LASDITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKT 157 (228)
T ss_dssp BCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTT
T ss_pred CcHHHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhc
Confidence 01 11334467889999999999 99999999999999853210 0135899999988664333 421
Q ss_pred -HHHHHHHHHH-----HHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHHhccC
Q 007547 193 -FNKIGIVLDE-----ELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRD 245 (599)
Q Consensus 193 -f~~~~k~ld~-----~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~~~~ 245 (599)
++...+.+-. .+.-+|.+.+-+....+.....++...+|.+++.+.|..+...
T Consensus 158 g~~~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 216 (228)
T 3tem_A 158 GVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKE 216 (228)
T ss_dssp STTCCHHHHHHHHHCCCCCTTTCEECCCEEECCTTTSCHHHHHHHHHHHHHHHHTGGGC
T ss_pred cccCCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 1222222211 2334688877665555554456788899999988888876543
No 89
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=98.42 E-value=2.1e-06 Score=82.74 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=108.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC----CchHHHhhhccCCeEEEEeecCCCCCCChhH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~----~~~~~~~~l~~~~~vif~~sTyG~G~~p~na 158 (599)
|+||+|++||..++...+++.+.+.+++. |.+++++|+.+..+ +-....+++...+.+||++|.| .+..|.-+
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~--g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~l 77 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQH--TDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLL 77 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTC--TTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhC--CCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHH
Confidence 57899999999987667999999999876 77888998754221 2234667788999999999999 99999999
Q ss_pred HHHHHHHhcCC----CCCCCCCCcEEEEEeecCcchhHH----------HHHHHHHHHHHHHCCCeEEecceeecCCC--
Q 007547 159 ARFYKWFTEGN----DRGPWLQQLKFGVFGLGNRQYEHF----------NKIGIVLDEELCKQGGARLVPLGLGDDDQ-- 222 (599)
Q Consensus 159 ~~F~~~L~~~~----~~~~~l~~~~~aVFGlGds~Y~~f----------~~~~k~ld~~L~~lGa~~i~~~g~~D~~~-- 222 (599)
+.|++++.... ..+..++||++.++.......++| .....-+...+.-+|.+.+-+....+...
T Consensus 78 K~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~ 157 (192)
T 3f2v_A 78 KQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNA 157 (192)
T ss_dssp HHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-----
T ss_pred HHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccc
Confidence 99999975421 112458999999987754442222 23334466778889998876654444321
Q ss_pred ----CcHHHHHHHHHHHHHHHHHhc
Q 007547 223 ----CIEDDFTAWRELVWPELDQLL 243 (599)
Q Consensus 223 ----~~e~~~~~W~~~l~~~L~~~~ 243 (599)
..++++++..++..+.|.++.
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~l~~~~ 182 (192)
T 3f2v_A 158 GYSEAARQEVERSARDYLAWLDALQ 182 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 134566666666555565543
No 90
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=98.40 E-value=6.9e-06 Score=79.70 Aligned_cols=148 Identities=11% Similarity=0.090 Sum_probs=103.4
Q ss_pred CCCeEEEEEECCC------chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCC
Q 007547 82 GKTKVTVFYGTQT------GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT 155 (599)
Q Consensus 82 ~~~~v~I~YgSqt------Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p 155 (599)
...+|+|+.||.- ++++.+|+.+.+.+.+. |.+++++|+.+- .+-+.+.+++...+.+||++|.| .+.+|
T Consensus 11 ~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~--g~~v~~~dL~~~-~d~~~~~~~l~~AD~iV~~~P~y-~~s~p 86 (204)
T 2amj_A 11 GSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDL--GHDVRIVRADSD-YDVKAEVQNFLWADVVIWQMPGW-WMGAP 86 (204)
T ss_dssp -CCEEEEEECCC------CHHHHHHHHHHHHHHHHT--TCEEEEEESSSC-CCHHHHHHHHHHCSEEEEEEECB-TTBCC
T ss_pred CCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHc--CCEEEEEeCCcc-ccHHHHHHHHHhCCEEEEECCcc-ccCCC
Confidence 3568999999988 99999999999999988 889999999752 12234777889999999999999 89999
Q ss_pred hhHHHHHHHHhcC-------------------CCCCCCCCCcEEEEEeecCcchhHH-------H-----HHHHHHHHHH
Q 007547 156 DNAARFYKWFTEG-------------------NDRGPWLQQLKFGVFGLGNRQYEHF-------N-----KIGIVLDEEL 204 (599)
Q Consensus 156 ~na~~F~~~L~~~-------------------~~~~~~l~~~~~aVFGlGds~Y~~f-------~-----~~~k~ld~~L 204 (599)
.-++.|++.+... ......+++|+++++.......+.| + .+...+...|
T Consensus 87 a~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l 166 (204)
T 2amj_A 87 WTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKAN 166 (204)
T ss_dssp HHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHH
Confidence 9999999975210 0012358999999988754432222 1 2333467788
Q ss_pred HHCCCeEEecceeecCCC--CcHHHHHHHHH
Q 007547 205 CKQGGARLVPLGLGDDDQ--CIEDDFTAWRE 233 (599)
Q Consensus 205 ~~lGa~~i~~~g~~D~~~--~~e~~~~~W~~ 233 (599)
.-+|++.+.+....+... ..++.++++.+
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (204)
T 2amj_A 167 QFLGMEPLPTFIANDVIKMPDVPRYTEEYRK 197 (204)
T ss_dssp HHTTCEECCCEEECSTTTSCCTTTHHHHHHH
T ss_pred HHcCCeecceEEEeCCCCcHHHHHHHHHHHH
Confidence 889998775544433221 34444444443
No 91
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=98.38 E-value=4.6e-06 Score=81.36 Aligned_cols=157 Identities=10% Similarity=0.081 Sum_probs=111.6
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC-----------------------------c
Q 007547 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD-----------------------------D 129 (599)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~-----------------------------~ 129 (599)
|++|+|++||.. +++..+|+.+.+.+.+.++|.+++++||.+.+.- -
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 579999999965 7899999999999988766788999998754320 0
Q ss_pred hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC--------CCCCCCCcEEEEEeecCcchhH-----HHHH
Q 007547 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND--------RGPWLQQLKFGVFGLGNRQYEH-----FNKI 196 (599)
Q Consensus 130 ~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~--------~~~~l~~~~~aVFGlGds~Y~~-----f~~~ 196 (599)
.++.+++...+.+||++|.| .+..|.-.+.|++++..... ....++||++.++......|.+ +...
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 22445577899999999999 99999999999999854211 1124889999988863334532 2334
Q ss_pred HHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHH
Q 007547 197 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (599)
Q Consensus 197 ~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~ 241 (599)
...+...|.-+|++.+........ ....+.-++|.++....+.+
T Consensus 163 ~~~l~~~l~~~G~~~v~~i~~~g~-~~~~~~~~~~l~~a~~~~~~ 206 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMETVVIEGH-NQFPDKAEEIITAGLEEAAK 206 (211)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEECT-TTSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeEEEEecc-ccCchHHHHHHHHHHHHHHH
Confidence 567778888899986644332222 22344667887776666554
No 92
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=97.72 E-value=4.8e-08 Score=94.76 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=94.6
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCCeEEEE-eCCCCC---CC---------chHHHhhhccCCeEEEEee
Q 007547 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVV-DLDDYA---MD---------DEQYEEKLKKETLAFFMVA 147 (599)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~la~~l~~~~~g~~v~v~-dl~d~~---~~---------~~~~~~~l~~~~~vif~~s 147 (599)
.++|+|+|||.. |+++.+|+.+++.+.+ |++++++ |+.++. .+ -..+..++...+.+||++|
T Consensus 6 ~mkIliI~gS~r~~s~t~~la~~~~~~~~~---g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP 82 (199)
T 3s2y_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE---GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTP 82 (199)
Confidence 578999999997 8999999999998874 5778888 887621 11 1124556778999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 148 TyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
+| ++..|..++.|++|+..... ..++||++++|+.+...++ ...+...+...|..+|+..+..
T Consensus 83 ~Y-~~s~p~~lK~~iD~l~~~~~--~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~~ 145 (199)
T 3s2y_A 83 EY-NYSVPGVLKNAIDWLSRVSP--QPLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLNR 145 (199)
Confidence 99 88889999999999975311 1389999999996433332 2346678888888899887643
No 93
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=98.20 E-value=4.6e-05 Score=75.01 Aligned_cols=159 Identities=10% Similarity=0.043 Sum_probs=113.0
Q ss_pred CCeEEEEEECC-----CchHHHHHHHHHHHHHhhhCCC-eEEEEeCCCCCCC--c-------------------------
Q 007547 83 KTKVTVFYGTQ-----TGTAEGFAKALAEEIKARYEKA-AVKVVDLDDYAMD--D------------------------- 129 (599)
Q Consensus 83 ~~~v~I~YgSq-----tGtte~~A~~la~~l~~~~~g~-~v~v~dl~d~~~~--~------------------------- 129 (599)
|++|+|+.||. .+++..+++.+.+.++++.++. +++++||.+.+.. +
T Consensus 4 MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d 83 (223)
T 3u7i_A 4 MNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTE 83 (223)
T ss_dssp CCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHH
Confidence 68999999995 5889999999999998875567 8999999765321 0
Q ss_pred --hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC------CC--CCC-CCcEEEEEeecCcch------hH
Q 007547 130 --EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND------RG--PWL-QQLKFGVFGLGNRQY------EH 192 (599)
Q Consensus 130 --~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~------~~--~~l-~~~~~aVFGlGds~Y------~~ 192 (599)
.++.+++...+.+||++|.| .+..|...+.|++++..... .+ ..+ +++++.++......| ..
T Consensus 84 ~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~ 162 (223)
T 3u7i_A 84 RMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTD 162 (223)
T ss_dssp HHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHH
T ss_pred HHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccch
Confidence 12455677889999999999 99999999999999865320 01 235 789988887633334 22
Q ss_pred HHHHHHHHHHHHHHCCCeEEecceeecCC-CCcHHHHHHHHHHHHHHHHHh
Q 007547 193 FNKIGIVLDEELCKQGGARLVPLGLGDDD-QCIEDDFTAWRELVWPELDQL 242 (599)
Q Consensus 193 f~~~~k~ld~~L~~lGa~~i~~~g~~D~~-~~~e~~~~~W~~~l~~~L~~~ 242 (599)
+......+...|.-+|++.+..+...... ...++.++++.+++....++.
T Consensus 163 ~~~~~~~l~~~l~~~G~~~~~~i~~~g~~~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 163 VEYSHKYLKAMFNFLGIEDYQIVRAQGTAVLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp TCHHHHHHHHHHHHHTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCceeEEEEEcCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888999877543322222 245677777877766655543
No 94
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=98.19 E-value=1.9e-05 Score=75.95 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=104.7
Q ss_pred CCCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeEE-EEeCCCCCCCc-------------hHHHhhhccCCeEEEE
Q 007547 82 GKTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVK-VVDLDDYAMDD-------------EQYEEKLKKETLAFFM 145 (599)
Q Consensus 82 ~~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~v~-v~dl~d~~~~~-------------~~~~~~l~~~~~vif~ 145 (599)
..++|+++.||. .+++..+|+.+.+.+ +. |++++ ++|+.+...-+ ..+.+++...+.+||+
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~--g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~ 79 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PA--SMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIV 79 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CT--TEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cC--CCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEE
Confidence 357999999995 588899998876643 34 77888 88887654311 1245667889999999
Q ss_pred eecCCCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe-c-c------ee
Q 007547 146 VATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV-P-L------GL 217 (599)
Q Consensus 146 ~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~-~-~------g~ 217 (599)
+|+| ++..|..++.|++|+.... ...++||++++++..-..++.. .+...+...|..+|+..+- + . ..
T Consensus 80 sP~y-~~~~~~~lK~~iD~~~~~~--~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~ 155 (193)
T 3svl_A 80 TPEY-NYSVPGGLKNAIDWLSRLP--DQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFMGGVIQNK 155 (193)
T ss_dssp ECCB-TTBCCHHHHHHHHHHHTST--TCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEEETTGGGG
T ss_pred eccc-CCCCCHHHHHHHHHHhhcC--ccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEeecchhhh
Confidence 9999 9999999999999997621 1348999999999522222221 4567888889999998763 1 1 11
Q ss_pred ecCC-C-CcHHHHHHHHHHHHHHHHHh
Q 007547 218 GDDD-Q-CIEDDFTAWRELVWPELDQL 242 (599)
Q Consensus 218 ~D~~-~-~~e~~~~~W~~~l~~~L~~~ 242 (599)
.|++ . -.+++..+..+.+...+...
T Consensus 156 f~~~~g~l~d~~~~~~l~~~~~~~~~~ 182 (193)
T 3svl_A 156 VDPQTGEVIDQGTLDHLTGQLTAFGEF 182 (193)
T ss_dssp EETTTTEECCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 1322 1 12345555555555555553
No 95
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=98.07 E-value=0.00011 Score=70.59 Aligned_cols=125 Identities=12% Similarity=0.150 Sum_probs=90.2
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCC---Cc--------hHHHhhhccCCeEEEEeecC
Q 007547 83 KTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---DD--------EQYEEKLKKETLAFFMVATY 149 (599)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~---~~--------~~~~~~l~~~~~vif~~sTy 149 (599)
+++|+|+.||. ...++++|+.+++.+. . +++++++|+.++.. +. ..+.+.+...+.+||++|.|
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~--~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY 78 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAE-G--RLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY 78 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHT-T--TEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhcc-C--CCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh
Confidence 46799999994 4567889998877664 3 67888888876432 11 11334577899999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEe
Q 007547 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (599)
Q Consensus 150 G~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~ 213 (599)
+|..|.-.+.|++|+..... ...+.+|.++++|.+-..++.. .+...+...|..+|+..+.
T Consensus 79 -n~s~pg~LKn~iDwlsr~~~-~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~ 139 (190)
T 3u7r_A 79 -NRSYPGMIKNAIDWATRPYG-QNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMS 139 (190)
T ss_dssp -TTBCCHHHHHHHHHHHCSTT-CCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECC
T ss_pred -cccCCHHHHHHHHHhccccc-CCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEcc
Confidence 99999999999999964211 1348999999998643333222 2446677788889997653
No 96
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=98.07 E-value=5.2e-05 Score=71.94 Aligned_cols=152 Identities=11% Similarity=-0.017 Sum_probs=104.4
Q ss_pred CeEEEEEECCC---chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHH
Q 007547 84 TKVTVFYGTQT---GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 84 ~~v~I~YgSqt---Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (599)
||++|++||-. +.+.+++...++.+ .++++.||.+ +.+-....+++...+.+||++|.| .+..|.-++.
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~------~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~ 72 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENF------SNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQ 72 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTC------TTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcC------CCEEEEECCC-cccHHHHHHHHHhCCEEEEECChh-hccCCHHHHH
Confidence 57999999976 44444444444332 2488999986 333344677889999999999999 8999999999
Q ss_pred HHHHHhcC---CCCCCCCCCcEEEEEeecCcchhHH----------HHHHHHHHHHHHHCCCeEEecceeecCCCCcHHH
Q 007547 161 FYKWFTEG---NDRGPWLQQLKFGVFGLGNRQYEHF----------NKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDD 227 (599)
Q Consensus 161 F~~~L~~~---~~~~~~l~~~~~aVFGlGds~Y~~f----------~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~ 227 (599)
|++.+... -..+..++||++.++.......++| ....+-+...+.-+|.+.+-+....+.....+++
T Consensus 73 ~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~ 152 (177)
T 3ha2_A 73 WMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDA 152 (177)
T ss_dssp HHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHH
T ss_pred HHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHH
Confidence 99986431 0012348999999887654432222 2344445667778899987665555444456788
Q ss_pred HHHHHHHHHHHHHHhc
Q 007547 228 FTAWRELVWPELDQLL 243 (599)
Q Consensus 228 ~~~W~~~l~~~L~~~~ 243 (599)
.++|.++..+.|....
T Consensus 153 ~~~~l~~~~~~l~~~~ 168 (177)
T 3ha2_A 153 QQRLLVAYQQYATNVG 168 (177)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcccc
Confidence 9999998888777643
No 97
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=97.74 E-value=0.00094 Score=67.84 Aligned_cols=164 Identities=15% Similarity=0.024 Sum_probs=109.4
Q ss_pred hcCCCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC-----------------------------
Q 007547 80 AAGKTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD----------------------------- 128 (599)
Q Consensus 80 ~~~~~~v~I~YgSq--tGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~----------------------------- 128 (599)
-...|||+|+||+- .+.+..+++.+.+.+++. |.+|++.||-+.+.+
T Consensus 19 ~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~--G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (280)
T 4gi5_A 19 YFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQA--GHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQ 96 (280)
T ss_dssp ---CCEEEEEECCSCTTSHHHHHHHHHHHHHHHT--TCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHH
T ss_pred hhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHC--CCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhc
Confidence 34567999999984 466889999999999988 899999999543321
Q ss_pred -----c-hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCC----------------CCCCCCCcEEEEEeec
Q 007547 129 -----D-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGND----------------RGPWLQQLKFGVFGLG 186 (599)
Q Consensus 129 -----~-~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~----------------~~~~l~~~~~aVFGlG 186 (599)
| ......+...+.+||+.|.| .+..|.-++.|++.+-.... ....|+||++.++-.-
T Consensus 97 ~~~~~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~ 175 (280)
T 4gi5_A 97 GTQSADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTA 175 (280)
T ss_dssp TCSCHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEEC
T ss_pred CCCcHHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEec
Confidence 0 11334467789999999999 88899999999998743110 1234789988765543
Q ss_pred Ccc---hh--HHHHHHHHHHHHH-----HHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHHHHhccCC
Q 007547 187 NRQ---YE--HFNKIGIVLDEEL-----CKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQLLRDE 246 (599)
Q Consensus 187 ds~---Y~--~f~~~~k~ld~~L-----~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L~~~~~~~ 246 (599)
+.. |. -|+.....+-..+ .=+|.+.+-+....+.....++++.+|.+.+-+.|..+...+
T Consensus 176 g~~~~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 245 (280)
T 4gi5_A 176 GGWAEHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDKTDAGQFADQCAALAERLDTLWQTE 245 (280)
T ss_dssp SSCGGGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGGCCHHHHHHHHHHHHHHHHTTTTSC
T ss_pred CCChHHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCCCCHHHHHHHHHHHHHHHhhhhhcC
Confidence 322 31 1222222221111 225888776666555444678889999999888888766433
No 98
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.71 E-value=0.00054 Score=73.49 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=105.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC----CCCCchHHHhhhccCCeEEEEeecCCCCCCChhH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD----YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d----~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na 158 (599)
+++|+|++||...+...+.+.+++.+.+. ..+++.||.+ ++.+-..+...+...+.+||++|.| .+..|.-+
T Consensus 236 ~mkiLvi~gspr~~ss~~n~~l~~~~~~~---~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~l 311 (413)
T 3l9w_A 236 SGMILIIYAHPYPHHSHANKRMLEQARTL---EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLL 311 (413)
T ss_dssp -CCEEEEECCSCGGGCSHHHHHHHHHHTS---SSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHH
T ss_pred CCCEEEEEECCCcchHHHHHHHHHHHhcC---CCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHHH
Confidence 47899999998887666888888877643 3477777732 2222234677788999999999999 88899999
Q ss_pred HHHHHHHhcCC----CCCCCCCCcEEEEEeecCcchhHH--------HHHHHHHHHHHHHCCCeEEecceeecCCCCcHH
Q 007547 159 ARFYKWFTEGN----DRGPWLQQLKFGVFGLGNRQYEHF--------NKIGIVLDEELCKQGGARLVPLGLGDDDQCIED 226 (599)
Q Consensus 159 ~~F~~~L~~~~----~~~~~l~~~~~aVFGlGds~Y~~f--------~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~ 226 (599)
+.|++++.... ..+..++||++.++.......++| .....-+...|.-+|.+.+-+........-.++
T Consensus 312 K~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~~~d~ 391 (413)
T 3l9w_A 312 KLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDE 391 (413)
T ss_dssp HHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTTCCHH
T ss_pred HHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCCCCHH
Confidence 99999985321 112358999998776532222222 234466777788899987755544333333456
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007547 227 DFTAWRELVWPELDQLL 243 (599)
Q Consensus 227 ~~~~W~~~l~~~L~~~~ 243 (599)
+..++.+.....|..+.
T Consensus 392 ~~~~~~~~~~~~L~~~~ 408 (413)
T 3l9w_A 392 TLEGQARHYKQRLLEWQ 408 (413)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677666666666543
No 99
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=73.85 E-value=5.8 Score=35.13 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=62.0
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCC-CCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHH
Q 007547 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD-DYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (599)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~-d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L 165 (599)
.|+-++.-|..-.+-..+...+-+.. |++ ++++- +...++ +.....+.+.-+++.|+. .+.-...+.++.+.|
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~-G~~--Vi~lG~~~p~e~--~v~~a~~~~~d~v~lS~~-~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNA-GFN--VVNIGVLSPQEL--FIKAAIETKADAILVSSL-YGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHT-TCE--EEEEEEEECHHH--HHHHHHHHTCSEEEEEEC-SSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHC-CCE--EEECCCCCCHHH--HHHHHHhcCCCEEEEEec-CcCcHHHHHHHHHHH
Confidence 34445766666666555555443333 544 55553 344433 566666555444444444 234445677788888
Q ss_pred hcCCCCCCCCCCcEEEEEeec---CcchhHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 166 TEGNDRGPWLQQLKFGVFGLG---NRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 166 ~~~~~~~~~l~~~~~aVFGlG---ds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
++.. +++.++.|=|-. ...| ....+.++++|+..++..
T Consensus 79 ~~~g-----~~~i~v~vGG~~~~~~~~~-------~~~~~~~~~~G~d~~~~~ 119 (137)
T 1ccw_A 79 DEAG-----LEGILLYVGGNIVVGKQHW-------PDVEKRFKDMGYDRVYAP 119 (137)
T ss_dssp HHTT-----CTTCEEEEEESCSSSSCCH-------HHHHHHHHHTTCSEECCT
T ss_pred HhcC-----CCCCEEEEECCCcCchHhh-------hhhHHHHHHCCCCEEECC
Confidence 7753 445777555532 2223 224567889999988763
No 100
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=72.74 E-value=6.9 Score=33.51 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=34.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeE--EEEeCCCCC
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAV--KVVDLDDYA 126 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v--~v~dl~d~~ 126 (599)
.+++|+++.+|--||+..++.+|.+.+.+. |+.+ ...++.++.
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~--gi~~~V~~~~~~~~~ 64 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQCRVNEIE 64 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHT--TCCEEEEEECTTTTT
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEecHHHHh
Confidence 367899999999999999999999999987 7654 445565553
No 101
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=70.06 E-value=5.5 Score=39.53 Aligned_cols=83 Identities=14% Similarity=0.018 Sum_probs=49.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~ 162 (599)
|++|+|+=|+++ +..|..|.+.|++. |++|++++..+...+ ..+|.++++||+.-. ..+.-.+...+.+.
T Consensus 4 m~~vLiV~g~~~---~~~a~~l~~aL~~~--g~~V~~i~~~~~~~~----~~~L~~yDvIIl~d~-~~~~l~~~~~~~L~ 73 (259)
T 3rht_A 4 MTRVLYCGDTSL---ETAAGYLAGLMTSW--QWEFDYIPSHVGLDV----GELLAKQDLVILSDY-PAERMTAQAIDQLV 73 (259)
T ss_dssp --CEEEEESSCT---TTTHHHHHHHHHHT--TCCCEEECTTSCBCS----SHHHHTCSEEEEESC-CGGGBCHHHHHHHH
T ss_pred CceEEEECCCCc---hhHHHHHHHHHHhC--CceEEEecccccccC----hhHHhcCCEEEEcCC-ccccCCHHHHHHHH
Confidence 578888832222 34566777777777 888999988776321 123899999988732 21222344555666
Q ss_pred HHHhcCCCCCCCCCCcEEEEEe
Q 007547 163 KWFTEGNDRGPWLQQLKFGVFG 184 (599)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFG 184 (599)
+|.++ |-.+.++|
T Consensus 74 ~yV~~---------GGgLi~~g 86 (259)
T 3rht_A 74 TMVKA---------GCGLVMLG 86 (259)
T ss_dssp HHHHT---------TCEEEEEC
T ss_pred HHHHh---------CCeEEEec
Confidence 66654 44566665
No 102
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=66.91 E-value=37 Score=33.84 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCC-CeEEEEeC-------CCCCCCchHHHhhhccCCeEEEEeecCCCCCC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEK-AAVKVVDL-------DDYAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g-~~v~v~dl-------~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~ 154 (599)
..+|+|+-|...-.-+..+..|++.|.+. | ++|.+.+- +.++ ++ |.++++||+ .+.|+--.
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~--g~f~V~~~~d~~~~~d~~~f~-~~------L~~~D~vV~--~~~~~~l~ 72 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENS--GRFDVDFVISPEQGKDMSGFV-LD------FSPYQLVVL--DYNGDSWP 72 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHT--TSEEEEEEECCCTTSCCTTCC-CC------CTTCSEEEE--CCCSSCCC
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhc--CCEEEEEEeCCccccchhHHh-hh------hhcCCEEEE--eCCCCcCC
Confidence 45788885555444677788888888876 5 88887743 2232 23 888998884 33322223
Q ss_pred ChhHHHHHHHHhc
Q 007547 155 TDNAARFYKWFTE 167 (599)
Q Consensus 155 p~na~~F~~~L~~ 167 (599)
+...+.|.+++++
T Consensus 73 ~~~~~~l~~yV~~ 85 (281)
T 4e5v_A 73 EETNRRFLEYVQN 85 (281)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4445567777765
No 103
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=58.70 E-value=26 Score=34.38 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeCCCCCC-CchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCc
Q 007547 100 FAKALAEEIKARYEKAAVKVVDLDDYAM-DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQL 178 (599)
Q Consensus 100 ~A~~la~~l~~~~~g~~v~v~dl~d~~~-~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~ 178 (599)
++..|++.|.+. |++|++..+++... -+ .+.|.++++||+...+.+.--.+...+.|.+++.+ |.
T Consensus 33 ~~~~i~~~L~~~--gf~V~~~t~dd~~~~~~---~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~---------Gg 98 (252)
T 1t0b_A 33 MHTVIASYLAEA--GFDAATAVLDEPEHGLT---DEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE---------GM 98 (252)
T ss_dssp HHHHHHHHHHHT--TCEEEEEESSSGGGGCC---HHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHHHhhC--CcEEEEEeccCccccCC---HhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc---------CC
Confidence 345667778776 88898877665431 11 12388999999865444333344445667777764 55
Q ss_pred EEEEEeec
Q 007547 179 KFGVFGLG 186 (599)
Q Consensus 179 ~~aVFGlG 186 (599)
-+.++-.|
T Consensus 99 G~vgiH~a 106 (252)
T 1t0b_A 99 GLIVLHSG 106 (252)
T ss_dssp EEEEEGGG
T ss_pred CEEEEccc
Confidence 56555544
No 104
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=58.56 E-value=12 Score=31.57 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=39.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE--eCCCCCCCchHHHhhhccCCeEEEEeecC
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV--DLDDYAMDDEQYEEKLKKETLAFFMVATY 149 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~--dl~d~~~~~~~~~~~l~~~~~vif~~sTy 149 (599)
+++|+++.|+--+|+ -+++++.+.++++ |+.+++. ++.+.. + .+.+++ +|+.+|..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~--gi~~~i~a~~~~~~~--~-----~~~~~D-vil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKY--EVPVIIEAFPETLAG--E-----KGQNAD-VVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHS--CCSEEEEEECSSSTT--H-----HHHHCS-EEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHC--CCCeEEEEecHHHHH--h-----hccCCC-EEEEccch
Confidence 568999999999999 8999999999988 7776554 444432 2 145566 44455554
No 105
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=56.16 E-value=10 Score=32.13 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEE
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV 119 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v 119 (599)
.++|+++.+|--||+ -++++|.+.+.+. |+++++
T Consensus 4 ~mkIlvvC~~G~~TS-ll~~kl~~~~~~~--gi~~~i 37 (109)
T 2l2q_A 4 SMNILLVCGAGMSTS-MLVQRIEKYAKSK--NINATI 37 (109)
T ss_dssp CEEEEEESSSSCSSC-HHHHHHHHHHHHH--TCSEEE
T ss_pred ceEEEEECCChHhHH-HHHHHHHHHHHHC--CCCeEE
Confidence 467999999999999 9999999999988 776544
No 106
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=56.13 E-value=16 Score=33.61 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=41.7
Q ss_pred CCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHH
Q 007547 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 174 ~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
+.+..+++|+-.||..-.-++..+..+.++|+++|++...-....|+.+.+.+.+..|
T Consensus 7 ~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a 64 (172)
T 1mkz_A 7 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAW 64 (172)
T ss_dssp SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 3677899999999997667788888999999999998665434445432344444444
No 107
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=49.89 E-value=28 Score=34.06 Aligned_cols=104 Identities=11% Similarity=-0.061 Sum_probs=59.7
Q ss_pred HhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCC-c----hHHHhhhccCCeEEEEeecCCCCC
Q 007547 79 IAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD-D----EQYEEKLKKETLAFFMVATYGDGE 153 (599)
Q Consensus 79 ~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~-~----~~~~~~l~~~~~vif~~sTyG~G~ 153 (599)
|+..+++|+|- - .+.-|+.+++.|.+. |+.+..+.+=+.... + +..+..+.+++.+||.|+.-
T Consensus 10 ~~~~g~~IlvT-----R-p~~~a~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~na---- 77 (269)
T 3re1_A 10 MDMSAWRLLLT-----R-PAEESAALARVLADA--GIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPA---- 77 (269)
T ss_dssp ---CCCEEEEC-----S-CHHHHHHHHHHHHTT--TCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHH----
T ss_pred cccCCCEEEEe-----C-ChHHHHHHHHHHHHC--CCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHH----
Confidence 34456676663 2 234477788888877 777654433222111 1 12334567788877776543
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 154 ~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
...|++.+.....+ ++++++++.| ..-.+.|++.|.+...+
T Consensus 78 ----V~~~~~~l~~~~~~---~~~~~i~aVG-------------~~Ta~aL~~~G~~~~~~ 118 (269)
T 3re1_A 78 ----ARLAIELIDEVWPQ---PPMQPWFSVG-------------SATGQILLDYGLDASWP 118 (269)
T ss_dssp ----HHHHHHHHHHHCSS---CCCSCEEESS-------------HHHHHHHHHTTCCEECC
T ss_pred ----HHHHHHHHHHhCCC---cccCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 56677777653221 4557777777 44455777889876554
No 108
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=49.72 E-value=64 Score=29.08 Aligned_cols=128 Identities=11% Similarity=-0.036 Sum_probs=70.1
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC-CCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHH
Q 007547 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (599)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d-~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~ 163 (599)
+..|+-++.-|..-.+-..+...+-+.. | .+++++.. ...++ +...+.+.+.-+++.|.. .+...+.+..+.+
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~-G--~eVi~lG~~~p~e~--lv~aa~~~~~diV~lS~~-~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDA-G--FEVVYTGLRQTPEQ--VAMAAVQEDVDVIGVSIL-NGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHT-T--CEEECCCSBCCHHH--HHHHHHHTTCSEEEEEES-SSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHC-C--CEEEECCCCCCHHH--HHHHHHhcCCCEEEEEee-chhhHHHHHHHHH
Confidence 3456667777777666655555554333 5 55677653 34433 666666555444444444 3344467788888
Q ss_pred HHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHHHHHHHH
Q 007547 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPEL 239 (599)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~~l~~~L 239 (599)
.|++.. +.+.++.|=|- - +. .. .+.+++.|+..++..+ ....+...|..+++..-
T Consensus 92 ~L~~~g-----~~~i~v~vGG~---~---~~---~~-~~~l~~~G~d~v~~~~------~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 92 KLRELG-----ADDIPVVLGGT---I---PI---PD-LEPLRSLGIREIFLPG------TSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHHTT-----CTTSCEEEEEC---C---CH---HH-HHHHHHTTCCEEECTT------CCHHHHHHHHHHHHHHH
T ss_pred HHHhcC-----CCCCEEEEeCC---C---ch---hc-HHHHHHCCCcEEECCC------CCHHHHHHHHHHHHHHh
Confidence 887743 34566655551 1 11 11 2357789998755321 12344556666665543
No 109
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=49.57 E-value=33 Score=29.08 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=55.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE--eCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHH
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV--DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~--dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~ 160 (599)
+++|+++.++ .++|.-+++++.+.+.++ |+++++. ...+.+ + .+.++++++ +.|-. +.
T Consensus 6 ~mkIlL~C~a-GmSTsllv~km~~~a~~~--gi~v~i~a~~~~~~~--~-----~~~~~DvvL-LgPQV---------~y 65 (108)
T 3nbm_A 6 ELKVLVLCAG-SGTSAQLANAINEGANLT--EVRVIANSGAYGAHY--D-----IMGVYDLII-LAPQV---------RS 65 (108)
T ss_dssp CEEEEEEESS-SSHHHHHHHHHHHHHHHH--TCSEEEEEEETTSCT--T-----TGGGCSEEE-ECGGG---------GG
T ss_pred CceEEEECCC-CCCHHHHHHHHHHHHHHC--CCceEEEEcchHHHH--h-----hccCCCEEE-EChHH---------HH
Confidence 5677776654 578888999999999988 8888874 344432 2 145677544 44443 11
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCcchhH-HHHHHHHHHHHHH
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELC 205 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~ 205 (599)
.++.++.... -.|+++++.-. ..|++ -....+.++..++
T Consensus 66 ~~~~ik~~~~----~~~ipV~vI~~--~~Yg~~~~~g~~vl~~~~~ 105 (108)
T 3nbm_A 66 YYREMKVDAE----RLGIQIVATRG--MEYIHLTKSPSKALQFVLE 105 (108)
T ss_dssp GHHHHHHHHT----TTTCEEEECCH--HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhh----hcCCcEEEeCH--HHhhhhhCCHHHHHHHHHH
Confidence 2233333111 24688888862 23553 1233444544444
No 110
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=48.86 E-value=1.8e+02 Score=27.61 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCeEEEEEECCC---chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCChh
Q 007547 83 KTKVTVFYGTQT---GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDN 157 (599)
Q Consensus 83 ~~~v~I~YgSqt---Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p~n 157 (599)
...|.|+..+.. .--..+.+.+.+.+.+. |..+.+.+.+.-......+...+. ..+.+|+..+.. ++
T Consensus 8 s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~- 79 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGFTSQMVFGITEVLSTT--QYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEP-----ND- 79 (288)
T ss_dssp CCEEEEECBCCCCSSCHHHHHHHHHHHHHTTS--SCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCT-----TC-
T ss_pred CCEEEEEecCCccccHHHHHHHHHHHHHHHHc--CCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCC-----Cc-
Confidence 456777777654 45667777777778776 777777655432222223333332 446666543221 11
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEeecCc----ch--hHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNR----QY--EHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
..++.+... +..+.+++.... .| ...-.+++.+-+.|.+.|.++|.=+
T Consensus 80 --~~~~~l~~~--------~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i 133 (288)
T 3gv0_A 80 --PRVRFMTER--------NMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRKRIAVI 133 (288)
T ss_dssp --HHHHHHHHT--------TCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred --HHHHHHhhC--------CCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEE
Confidence 245555542 344555543211 11 2334577888888999999988643
No 111
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=48.22 E-value=15 Score=31.56 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=38.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchH-HHhhhccCCeEEEE
Q 007547 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFM 145 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~-~~~~l~~~~~vif~ 145 (599)
..-++|.|||+.+.+.+.++.+. +. |.++.++++..+.+=+.+ +...+.+.+.++++
T Consensus 14 ~dv~iv~~Gs~~~~a~eA~~~L~----~~--Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvv 71 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILDVIEDLK----EE--GISANLLYLKMFSPFPTEFVKNVLSSANLVIDV 71 (118)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHH----HT--TCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCC
T ss_pred CCEEEEEECccHHHHHHHHHHHH----HC--CCceEEEEECeEecCCHHHHHHHHcCCCEEEEE
Confidence 34567789999999988887664 45 778999988876554433 33444555555544
No 112
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=45.36 E-value=2e+02 Score=27.20 Aligned_cols=139 Identities=9% Similarity=-0.018 Sum_probs=73.7
Q ss_pred CCeEEEEEECCCch-HHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCChhHH
Q 007547 83 KTKVTVFYGTQTGT-AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 83 ~~~v~I~YgSqtGt-te~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p~na~ 159 (599)
...|.++..+.+.. -..+.+.+.+.+.+. |+.+.+.+.+.-......++..+. ..+.+|+. ++. +....
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~-----~~~~~ 76 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERL--GGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQ-LGN-----LDVLN 76 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEE-SSC-----HHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEe-CCC-----hhhhH
Confidence 45677777655443 356778888888877 888877765432221222344443 34555544 221 12344
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCc---ch--hHHHHHHHHHHHHHHH--CCCeEEecceeecCCCCcHHHHHHHH
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNR---QY--EHFNKIGIVLDEELCK--QGGARLVPLGLGDDDQCIEDDFTAWR 232 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds---~Y--~~f~~~~k~ld~~L~~--lGa~~i~~~g~~D~~~~~e~~~~~W~ 232 (599)
..++.+.+. +..+.+++.... .| ...-.+++.+-+.|.+ .|.+++.=+ .++.. ......+.
T Consensus 77 ~~~~~~~~~--------~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i-~~~~~---~~~~~~R~ 144 (291)
T 3l49_A 77 PWLQKINDA--------GIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVF-NGFYS---VPVCKIRY 144 (291)
T ss_dssp HHHHHHHHT--------TCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEE-CSCTT---SHHHHHHH
T ss_pred HHHHHHHHC--------CCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCceEEEE-eCCCC---CchHHHHH
Confidence 456666552 345555543211 11 2233466777777877 898887643 22221 12334455
Q ss_pred HHHHHHHHH
Q 007547 233 ELVWPELDQ 241 (599)
Q Consensus 233 ~~l~~~L~~ 241 (599)
+.+..++.+
T Consensus 145 ~gf~~~l~~ 153 (291)
T 3l49_A 145 DQMKYVLEA 153 (291)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555555554
No 113
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=43.73 E-value=15 Score=33.64 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=38.5
Q ss_pred CCCcEEEEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHH
Q 007547 175 LQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~ 232 (599)
.+..+++|+-.||.-+ .-++.....+.+.|+++|++...-....|+ +.+.+.+.+|.
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~ 63 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAI 63 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHH
Confidence 4568999999999876 456777889999999999986644334455 44555555554
No 114
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=42.57 E-value=13 Score=34.61 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=34.5
Q ss_pred CCCcEEEEEeecCcch-------hHHHHHHHHHHHHHHHCCCeEEecceeecC
Q 007547 175 LQQLKFGVFGLGNRQY-------EHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y-------~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~ 220 (599)
.+..+++|+-.||.-+ .-++.....+.+.|+++|++...-....|+
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd 65 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD 65 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC
Confidence 6778999999999765 245667788999999999986643333344
No 115
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=42.23 E-value=35 Score=29.68 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=33.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCC-e--EEEEeCCCC
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKA-A--VKVVDLDDY 125 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~-~--v~v~dl~d~ 125 (599)
.+++|+++.++--||+..++.+|.+.+.+. |+ . +...++.++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~--gi~~~~V~~~~i~e~ 56 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDA--GLSQISVTNSAINNL 56 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHT--TCTTSEEEECCTTCC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHC--CCceEEEEEeeHHHC
Confidence 467899999999999999999999999877 66 4 344455554
No 116
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=41.76 E-value=1.9e+02 Score=27.31 Aligned_cols=141 Identities=9% Similarity=0.046 Sum_probs=76.7
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCChhHH
Q 007547 83 KTKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 83 ~~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p~na~ 159 (599)
++.|.++..+.+. --..+.+.+.+.+.+. |+.+.+++...-.......+..+. ..+.+|+..... ..++...
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~~ 89 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ--GYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKS---ALQTPNI 89 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSST---TSCCTTH
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccc---cccCCcH
Confidence 3678777776554 3567788888888877 888887766532222222344443 345555543322 1122223
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCc----ch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHH
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNR----QY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~ 233 (599)
..++.+... +..+.+++.... .| ...-.+++.+-+.|.+.|.++|.=++ +... .......+
T Consensus 90 ~~~~~~~~~--------~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~-~~~~----~~~~~R~~ 156 (298)
T 3tb6_A 90 GYYLNLEKN--------GIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIF-KADD----TQGVKRMN 156 (298)
T ss_dssp HHHHHHHHT--------TCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEE-ESSS----HHHHHHHH
T ss_pred HHHHHHHhc--------CCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEc-CCCC----ccHHHHHH
Confidence 456666552 355555553211 11 22345678888888899998876433 2221 22334445
Q ss_pred HHHHHHHH
Q 007547 234 LVWPELDQ 241 (599)
Q Consensus 234 ~l~~~L~~ 241 (599)
.+..++.+
T Consensus 157 gf~~~l~~ 164 (298)
T 3tb6_A 157 GFIQAHRE 164 (298)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55556655
No 117
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=38.47 E-value=60 Score=26.61 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=39.7
Q ss_pred CCeEEEecc---CCHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhh
Q 007547 331 GDHVGVYVE---NCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARY 393 (599)
Q Consensus 331 GD~l~V~p~---N~~~~V~~~l~~lgl~~d~~~~l~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~y 393 (599)
||.+.+.-+ +-.+..+++-+++++..++.|+++-.+++|. +..+-+-.-|.+||+.|
T Consensus 15 gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD------~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 15 GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGD------PCTVSSQLELEEAFRLY 74 (89)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSC------CEECCSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCC------cccccCHHHHHHHHHHH
Confidence 666655533 3457888888999999889999999998664 23344455566666644
No 118
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=37.85 E-value=25 Score=32.26 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=34.3
Q ss_pred CCCcEEEEEeecCcchh-H------HHHHHHHHHHHHHHCCCeEEecceeecC
Q 007547 175 LQQLKFGVFGLGNRQYE-H------FNKIGIVLDEELCKQGGARLVPLGLGDD 220 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y~-~------f~~~~k~ld~~L~~lGa~~i~~~g~~D~ 220 (599)
.+..+++|+-.||+.|+ . ....+..|.+.|+++|++.+.-....|+
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd 65 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD 65 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC
Confidence 46789999999998763 1 2456788999999999987655444454
No 119
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=37.55 E-value=1.4e+02 Score=28.77 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=31.5
Q ss_pred CCeEEEEEECCCchHHH---HHHHHHHHHHhhhCCCeEEEEeCCCCCC
Q 007547 83 KTKVTVFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDYAM 127 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~---~A~~la~~l~~~~~g~~v~v~dl~d~~~ 127 (599)
+++|.|++|.++---+. .+..+++.+++. |+++.++|.++...
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~--G~~v~~~~~~~~~~ 47 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREG--GIDAYPVDPKEVDV 47 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT--TCEEEEECTTTSCG
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHC--CCeEEEEecCchHH
Confidence 46899999877653332 567788888878 89898888876543
No 120
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=37.50 E-value=2.8e+02 Score=26.42 Aligned_cols=114 Identities=9% Similarity=0.086 Sum_probs=65.7
Q ss_pred CCeEEEEEE----CC-CchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCC
Q 007547 83 KTKVTVFYG----TQ-TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPT 155 (599)
Q Consensus 83 ~~~v~I~Yg----Sq-tGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p 155 (599)
...|.|+.. +. ...-..+.+.+.+.+.+. |..+.+.+.++ ......++..+. ..+.+|+..... +
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~-----~ 77 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--GLDLLLIPDEP-GEKYQSLIHLVETRRVDALIVAHTQP-----E 77 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--TCEEEEEEECT-TCCCHHHHHHHHHTCCSEEEECSCCS-----S
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHC--CCEEEEEeCCC-hhhHHHHHHHHHcCCCCEEEEeCCCC-----C
Confidence 456777776 22 223466777788888877 88888887765 333334555554 345666544332 1
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcEEEEEeecC--c--ch--hHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGN--R--QY--EHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGd--s--~Y--~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
+ ..++.+... +..+.+++-.. . .| ...-.+++..-+.|.++|.++|.=+
T Consensus 78 ~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i 132 (294)
T 3qk7_A 78 D---FRLQYLQKQ--------NFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFV 132 (294)
T ss_dssp C---HHHHHHHHT--------TCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred h---HHHHHHHhC--------CCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCceEEEE
Confidence 1 345555542 34555555321 1 11 2234567788888889999988643
No 121
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=36.89 E-value=2.9e+02 Score=26.46 Aligned_cols=139 Identities=10% Similarity=0.005 Sum_probs=71.3
Q ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCChhHHH
Q 007547 84 TKVTVFYGTQT-GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 84 ~~v~I~YgSqt-Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p~na~~ 160 (599)
..|.|+..+.+ .--..+.+.+.+.+.+. |+.+.+.+.+.-.......+..+. ..+.+|+..... +....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~------~~~~~ 74 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESL--GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNG------QVLSN 74 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHT--SCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSST------TSCHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh------hhhHH
Confidence 45666665433 33456777888888877 788877765322111122344443 345555543322 22234
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCc-----ch--hHHHHHHHHHHHHHH-HCCCeEEecceeecCCCCcHHHHHHHH
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNR-----QY--EHFNKIGIVLDEELC-KQGGARLVPLGLGDDDQCIEDDFTAWR 232 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds-----~Y--~~f~~~~k~ld~~L~-~lGa~~i~~~g~~D~~~~~e~~~~~W~ 232 (599)
.++.+.+ .+..+.+++.... .| ...-.+++.+-+.|. ++|.+++.=+ .++... .....+.
T Consensus 75 ~~~~~~~--------~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i-~g~~~~---~~~~~R~ 142 (313)
T 3m9w_A 75 VVKEAKQ--------EGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLM-GGSPVD---NNAKLFR 142 (313)
T ss_dssp HHHHHHT--------TTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEE-ESCTTC---HHHHHHH
T ss_pred HHHHHHH--------CCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEE-ECCCCC---ccHHHHH
Confidence 5666654 2455666554211 12 123346677777777 8999887643 232221 2233344
Q ss_pred HHHHHHHHHh
Q 007547 233 ELVWPELDQL 242 (599)
Q Consensus 233 ~~l~~~L~~~ 242 (599)
+.+..++.+.
T Consensus 143 ~Gf~~~l~~~ 152 (313)
T 3m9w_A 143 AGQMKVLKPY 152 (313)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4455555543
No 122
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=35.53 E-value=52 Score=31.62 Aligned_cols=89 Identities=12% Similarity=-0.032 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeCCCCCCC----c-hHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCC
Q 007547 100 FAKALAEEIKARYEKAAVKVVDLDDYAMD----D-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (599)
Q Consensus 100 ~A~~la~~l~~~~~g~~v~v~dl~d~~~~----~-~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~ 174 (599)
-+..+++.|.+. |+.+..+.+=+.... . +..+..+.+++.+||.|+.- ...|++.+.....+
T Consensus 17 ~~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~a--------V~~~~~~l~~~~~~--- 83 (254)
T 4es6_A 17 ECAALAASLGEA--GVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPA--------ARLGLERLDRYWPQ--- 83 (254)
T ss_dssp HHHHHHHHHHHT--TCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHH--------HHHHHHHHHHHCSS---
T ss_pred HhHHHHHHHHHC--CCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHH--------HHHHHHHHHHhCCC---
Confidence 456677777777 776544433221110 0 11334567788777766543 56677877653211
Q ss_pred CCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
++++++++.| ..-.+.|++.|.+...+
T Consensus 84 ~~~~~i~aVG-------------~~Ta~~L~~~G~~~~~~ 110 (254)
T 4es6_A 84 PPQQTWCSVG-------------AATAAILEAYGLDVTYP 110 (254)
T ss_dssp CCSCEEEESS-------------HHHHHHHHHHTCCEECC
T ss_pred cccCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 4557777777 34445667778876543
No 123
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=35.08 E-value=19 Score=30.46 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=28.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCe
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA 116 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~ 116 (599)
.+++|+++.++--||+.-++.+|.+.+.+. |+.
T Consensus 17 ~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~--gi~ 49 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQL--GVS 49 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHT--TCC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHHHHHc--CCC
Confidence 367899999999999999999999999887 665
No 124
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=35.04 E-value=41 Score=32.14 Aligned_cols=46 Identities=9% Similarity=0.185 Sum_probs=36.0
Q ss_pred CCCCCeeEEEEEeeeecCCCCCCceEEEEEEe-c-CC---CCccCCCCeEEEeccC
Q 007547 290 DIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV-S-GT---GITYETGDHVGVYVEN 340 (599)
Q Consensus 290 ~~~~p~~a~V~~~~~L~~~~~~r~~~hle~di-~-~~---~l~Y~~GD~l~V~p~N 340 (599)
....++.++|++.+.++ .+++.++|.. + +. ...|+||.|+-|..++
T Consensus 6 ~~~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 56 (250)
T 1tvc_A 6 GEVGSFEAEVVGLNWVS-----SNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG 56 (250)
T ss_dssp CCSSEEEEEBCCCEEEE-----TTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS
T ss_pred CCcceEEEEEEEEEEcC-----CCeEEEEEEecCCCCcccccCcCCCcEEEEEeCC
Confidence 34456778999888886 3688999987 6 43 5899999999998754
No 125
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=33.03 E-value=69 Score=31.13 Aligned_cols=42 Identities=5% Similarity=0.169 Sum_probs=33.7
Q ss_pred CeeEEEEEeeeecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 007547 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (599)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hle~di~~-~~l~Y~~GD~l~V~p~N 340 (599)
.+.++|++.+.++. +++.++|..++ ..+.|+||.|+.|..+.
T Consensus 9 ~~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~ 51 (290)
T 2r6h_A 9 EWECEVLSNKNVST-----FIKEFVVKLPEGETMNFKSGSYAQIKIPK 51 (290)
T ss_dssp EEEEEEEEEEESSS-----SEEEEEEECSTTCCCCCCTTCEEEEEECS
T ss_pred EEEEEEEEeeecCC-----CeEEEEEEcCCCCccccCCCceEEEEccc
Confidence 35689999988863 68999999875 36789999999997554
No 126
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=32.94 E-value=34 Score=31.20 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=37.4
Q ss_pred CCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHH
Q 007547 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
.+..+++|+-.||.--.-++..+..+.++|+++|++...-....|+...+.+.+.+|
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 67 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAG 67 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHH
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHH
Confidence 466899999999987334566678899999999997654433334422333344444
No 127
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=31.30 E-value=79 Score=29.56 Aligned_cols=40 Identities=8% Similarity=0.207 Sum_probs=32.3
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N 340 (599)
+.++|++.+.++. +++.++|..+. .+.|+||.|+.|..++
T Consensus 3 ~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGq~v~l~~~~ 42 (232)
T 1qfj_A 3 LSCKVTSVEAITD-----TVYRVRIVPDA-AFSFRAGQYLMVVMDE 42 (232)
T ss_dssp EEEEEEEEEESSS-----SCEEEEEEESS-CCCCCTTCEEEEESSS
T ss_pred eEEEEEEEEecCC-----CEEEEEEecCC-CCCcCCCCEEEEECCC
Confidence 4578888888863 68889998764 6899999999998754
No 128
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=31.10 E-value=64 Score=30.63 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCCC--CchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHhcCCCCCCCCCCc
Q 007547 101 AKALAEEIKARYEKAAVKVVDLDDYAM--DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQL 178 (599)
Q Consensus 101 A~~la~~l~~~~~g~~v~v~dl~d~~~--~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~~~~~~~~~l~~~ 178 (599)
+..+++.|.+. |+.+..+.+=+... +.+..+..+.+++.+||.|+.- ...|++.+.. . +.++
T Consensus 13 ~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~a--------V~~~~~~l~~-~-----l~~~ 76 (240)
T 3mw8_A 13 NAAMASALDAL--AIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSA--------VSFATPWLKD-Q-----WPKA 76 (240)
T ss_dssp CHHHHHHHHHH--TCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHH--------HHHHHHHHTT-C-----CCSS
T ss_pred hHHHHHHHHHC--CCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHH--------HHHHHHHHHh-h-----CcCC
Confidence 34555666666 66654332211110 1122445577788877766543 5667777763 1 5678
Q ss_pred EEEEEeecCcchhHHHHHHHHHHHHHHHCCCeE
Q 007547 179 KFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (599)
Q Consensus 179 ~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (599)
++++.| ..-.+.|++.|.+.
T Consensus 77 ~~~aVG-------------~~Ta~~L~~~G~~~ 96 (240)
T 3mw8_A 77 TYYAVG-------------DATADALALQGITA 96 (240)
T ss_dssp EEEESS-------------HHHHHHHHHTTCCC
T ss_pred eEEEEC-------------HHHHHHHHHcCCCC
Confidence 888887 44556778889865
No 129
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=30.24 E-value=1e+02 Score=30.46 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCeEEEEEECCCchHHH---HHHHHHHHHHhhhCCCeEEEEeCCCCC
Q 007547 83 KTKVTVFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDYA 126 (599)
Q Consensus 83 ~~~v~I~YgSqtGtte~---~A~~la~~l~~~~~g~~v~v~dl~d~~ 126 (599)
+++|.|+||..+.--+- -|+.+++.|.+. |+++.++|..+..
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~--g~~v~~i~~~~~~ 57 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDA--GIDAHPFDPAERP 57 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT--TCEEEEECTTTSC
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHC--CCEEEEEeCCCch
Confidence 57899999977764433 467888888878 8888888865543
No 130
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=29.88 E-value=58 Score=31.37 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=33.0
Q ss_pred eEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 007547 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (599)
Q Consensus 296 ~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N~ 341 (599)
.++|++.+.++ .+++.++|..++....|+||.|+.|..++.
T Consensus 7 ~~~V~~~~~~t-----~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~ 47 (262)
T 1ep3_B 7 MMTVVSQREVA-----YNIFEMVLKGTLVDEMDLPGQFLHLAVPNG 47 (262)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEESGGGGGCCSTTCEEEECCSCT
T ss_pred ceEEEEEEEec-----CCEEEEEEEcCcccccCCCCceEEEEcCCC
Confidence 58899999886 368899998775346899999999987653
No 131
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=28.03 E-value=89 Score=31.26 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=34.3
Q ss_pred CeeEEEEEeeeecCCCCCCceEEEEEEecCC--CCccCCCCeEEEeccC
Q 007547 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVEN 340 (599)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hle~di~~~--~l~Y~~GD~l~V~p~N 340 (599)
++.++|++.+.++. +++.++|..++. .+.|+||.|+.|..++
T Consensus 108 ~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 151 (338)
T 1krh_A 108 HFEGTLARVENLSD-----STITFDIQLDDGQPDIHFLAGQYVNVTLPG 151 (338)
T ss_dssp EEEEEEEEEEESSS-----SEEEEEEEECTTCCCCCCCTTCEEEEECTT
T ss_pred EEEEEEEEEEEcCC-----CEEEEEEEeCCCCCCCCcCCCCeEEEEcCC
Confidence 45688998888863 689999998763 5899999999998764
No 132
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=27.91 E-value=2.3e+02 Score=26.70 Aligned_cols=137 Identities=11% Similarity=0.056 Sum_probs=72.1
Q ss_pred CCeEEEEEEC------CCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCC
Q 007547 83 KTKVTVFYGT------QTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEP 154 (599)
Q Consensus 83 ~~~v~I~YgS------qtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~ 154 (599)
...|.|+..+ ...-...+.+.+.+.+.+. |..+.+++.+.-......++..+. ..+.+|+..+..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~----- 80 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--GYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE----- 80 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--TCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT-----
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC-----
Confidence 4567777665 3334567777788888877 777766654432111122333343 345666543322
Q ss_pred ChhHHHHHHHHhcCCCCCCCCCCcEEEEEeecCc-----ch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHH
Q 007547 155 TDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-----QY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDD 227 (599)
Q Consensus 155 p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds-----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~ 227 (599)
++ ..++.+... +..+.+++.... .| ...-.+++.+-+.|.+.|.++|.=++ ++.. ...
T Consensus 81 ~~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~-~~~~---~~~ 145 (292)
T 3k4h_A 81 ND---RIIQYLHEQ--------NFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIG-GGSD---LLV 145 (292)
T ss_dssp TC---HHHHHHHHT--------TCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEE-SCTT---BHH
T ss_pred Ch---HHHHHHHHC--------CCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEe-Cccc---chh
Confidence 11 355666542 455666653211 11 12345678888888889999876432 2221 122
Q ss_pred HHHHHHHHHHHHHH
Q 007547 228 FTAWRELVWPELDQ 241 (599)
Q Consensus 228 ~~~W~~~l~~~L~~ 241 (599)
.....+.+..++.+
T Consensus 146 ~~~R~~gf~~~l~~ 159 (292)
T 3k4h_A 146 TRDRLAGMSDALKL 159 (292)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23344455555554
No 133
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=27.87 E-value=4e+02 Score=26.31 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
.+....+++.. ...++++++.- +|.+.....+.+.+.+++.|++.+...
T Consensus 126 ~~~~~~~~~~~-------~g~k~vaii~~---~~~~g~~~~~~~~~~~~~~g~~vv~~~ 174 (371)
T 4f06_A 126 NTVPAAKVAKQ-------KGATKVAIAVS---DYGPGIDAETAFKKTFEAEGGKVVEAV 174 (371)
T ss_dssp HHHHHHHHHHH-------TTCCEEEEEEE---SSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhhhhhhhhhh-------cCceEEEEEcC---CcccchhHHHHHHHHHHhcCCceEEEE
Confidence 34445666665 34678999873 455666677889999999999877653
No 134
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=27.69 E-value=1e+02 Score=29.62 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=33.8
Q ss_pred CCCeeEEEEEeeeecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 007547 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (599)
Q Consensus 292 ~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~--~l~Y~~GD~l~V~p~ 339 (599)
...+.++|+..+.++ .+++.++|.+++. .+.|+||.|+-|..+
T Consensus 14 ~~~~~~~V~~~~~~~-----~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~ 58 (275)
T 1umk_A 14 DIKYPLRLIDREIIS-----HDTRRFRFALPSPQHILGLPVGQHIYLSAR 58 (275)
T ss_dssp TCCEEEEEEEEEECS-----SSEEEEEEECSSTTCBCCCCTTCEEEEEEE
T ss_pred CccEEEEEEEEEEcC-----CCeEEEEEEcCCcccccCCCCCcEEEEEEe
Confidence 445678999988886 3688899988753 478999999999864
No 135
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=27.50 E-value=3.9e+02 Score=25.23 Aligned_cols=138 Identities=7% Similarity=0.025 Sum_probs=72.2
Q ss_pred CCeEEEEEECCC-chHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCc-hHHHhhhc--cCCeEEEEeecCCCCCCChhH
Q 007547 83 KTKVTVFYGTQT-GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-EQYEEKLK--KETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 83 ~~~v~I~YgSqt-Gtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~-~~~~~~l~--~~~~vif~~sTyG~G~~p~na 158 (599)
.++|.++..+.. .--..+.+.+.+.+.+. |+.+.++...+.+.+. ...+..+. ..+.+|+..... +..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~------~~~ 75 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP------VEL 75 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST------TTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH------HHH
Confidence 455666654443 34567777888888877 7887764333333322 12333332 345555533221 222
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEeecCc-----ch--hHHHHHHHHHHHHHHHC--CCeEEecceeecCCCCcHHHHH
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNR-----QY--EHFNKIGIVLDEELCKQ--GGARLVPLGLGDDDQCIEDDFT 229 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds-----~Y--~~f~~~~k~ld~~L~~l--Ga~~i~~~g~~D~~~~~e~~~~ 229 (599)
...++.+... +..+.+++.... .| ...-.+++.+-+.|.+. |.++|.=++ +... ....
T Consensus 76 ~~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~-~~~~----~~~~ 142 (305)
T 3g1w_A 76 TDTINKAVDA--------GIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVIT-LPNQ----LNHQ 142 (305)
T ss_dssp HHHHHHHHHT--------TCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE-CTTC----HHHH
T ss_pred HHHHHHHHHC--------CCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEe-CCCc----ccHH
Confidence 3355666542 345555553211 11 22345677788888887 888886544 3321 2344
Q ss_pred HHHHHHHHHHHH
Q 007547 230 AWRELVWPELDQ 241 (599)
Q Consensus 230 ~W~~~l~~~L~~ 241 (599)
...+.+..++.+
T Consensus 143 ~R~~gf~~~l~~ 154 (305)
T 3g1w_A 143 ERTTGFKETLEA 154 (305)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555566654
No 136
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=27.49 E-value=93 Score=29.81 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=33.7
Q ss_pred CCCeeEEEEEeeeecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 007547 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (599)
Q Consensus 292 ~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~--~l~Y~~GD~l~V~p~ 339 (599)
...+.++|++.+.++. +++.++|..++. .+.|+||.|+.|..+
T Consensus 10 ~~~~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~ 54 (270)
T 2cnd_A 10 RGRIHCRLVAKKELSR-----DVRLFRFSLPSPDQVLGLPIGKHIFVCAT 54 (270)
T ss_dssp -CCEEEEEEEEEEEET-----TEEEEEEECSSTTCCCCCCTTCEEEEEEE
T ss_pred CceEEEEEEEEEEeCC-----CeEEEEEECCCCccccCCCCCCEEEEEee
Confidence 3456789999999973 688899988753 478999999999754
No 137
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=26.92 E-value=2.4e+02 Score=26.64 Aligned_cols=137 Identities=7% Similarity=-0.011 Sum_probs=75.0
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCChhHH
Q 007547 83 KTKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 83 ~~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p~na~ 159 (599)
...|.++..+.+. -...+.+.+.+.+.+. |+.+.+++..+-......++..+. ..+.+|+..... .+
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~--- 77 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHK--GYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-----EH--- 77 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-----CC---
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-----Ch---
Confidence 4567777765443 3466777788888877 888888776542222222444443 345555543322 11
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCc----ch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHHH
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNR----QY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRE 233 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~~ 233 (599)
..++.+.. .+..+.+++.... .| ...-.+++.+-+.|.+.|.++|.=++ ++.. ......+.+
T Consensus 78 ~~~~~~~~--------~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~-~~~~---~~~~~~R~~ 145 (291)
T 3egc_A 78 DYLRTELP--------KTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIV-GSAG---LMTSRERLK 145 (291)
T ss_dssp HHHHHSSC--------TTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEEC-SCTT---SHHHHHHHH
T ss_pred HHHHHhhc--------cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEe-CCCC---CcCHHHHHH
Confidence 24555543 2455666654221 11 23345678888888889998875332 2221 133445555
Q ss_pred HHHHHHHH
Q 007547 234 LVWPELDQ 241 (599)
Q Consensus 234 ~l~~~L~~ 241 (599)
.+..++.+
T Consensus 146 gf~~~l~~ 153 (291)
T 3egc_A 146 GFRAAMSA 153 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666665
No 138
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.83 E-value=3.9e+02 Score=24.89 Aligned_cols=115 Identities=8% Similarity=-0.011 Sum_probs=66.7
Q ss_pred CCCeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCChhH
Q 007547 82 GKTKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 82 ~~~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p~na 158 (599)
....|.|+..+... --..+.+.+.+.+.+. |..+.+++.+.-......++..+. ..+.+|+.. +. .
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~-~------- 74 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESR--GYIGVLFDANADIEREKTLLRAIGSRGFDGLILQS-FS-N------- 74 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--TCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEES-SC-C-------
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec-CC-c-------
Confidence 34567777766533 3466777787888877 788877775542222223444443 334555543 22 1
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEeecCc----ch--hHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNR----QY--EHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
...++.+... +..+.+++.... .| ...-.+++.+-+.|.+.|.++|.=+
T Consensus 75 ~~~~~~l~~~--------~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i 129 (276)
T 3jy6_A 75 PQTVQEILHQ--------QMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQHVVVL 129 (276)
T ss_dssp HHHHHHHHTT--------SSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHC--------CCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEE
Confidence 3466666652 455666654211 11 2344577888888999999998644
No 139
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=26.67 E-value=90 Score=30.18 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=33.8
Q ss_pred CCCeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 007547 292 HHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (599)
Q Consensus 292 ~~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N 340 (599)
..++.++|++.+.++. +++.++|..++ .+.|+||.|+.|..++
T Consensus 14 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 56 (272)
T 2bgi_A 14 VLPDAQTVTSVRHWTD-----TLFSFRVTRPQ-TLRFRSGEFVMIGLLD 56 (272)
T ss_dssp --CEEEEEEEEEEEET-----TEEEEEEECCT-TCCCCTTCEEEEEEEC
T ss_pred EEeEEEEEEEEEEcCC-----CEEEEEEeCCC-CCccCCCCEEEEEecc
Confidence 3556799999999973 58889998765 5789999999998763
No 140
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=26.52 E-value=91 Score=30.63 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=33.4
Q ss_pred HHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 007547 76 EADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD 123 (599)
Q Consensus 76 ~~~~~~~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~ 123 (599)
..++.++.++|.|+|.+...++....+.+.+.+... |+++......
T Consensus 133 ~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~--g~~~v~~~~~ 178 (302)
T 3lkv_A 133 IKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKH--GIKLVEATAL 178 (302)
T ss_dssp HHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHT--TCEEEEEECS
T ss_pred HHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHc--CCEEEEEecC
Confidence 334455789999999998888888888887777765 6665444443
No 141
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.24 E-value=43 Score=30.90 Aligned_cols=55 Identities=18% Similarity=0.051 Sum_probs=38.2
Q ss_pred cEEEEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHHH
Q 007547 178 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (599)
Q Consensus 178 ~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W~ 232 (599)
++++|+-.||.-. ...+..+..+.+.|+++|++...-....|+...+.+.+.+|.
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~ 60 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVAL 60 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH
Confidence 7899999998764 345667788999999999986654444455334455555554
No 142
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.22 E-value=3.1e+02 Score=25.38 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=61.2
Q ss_pred CeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCChhHHH
Q 007547 84 TKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAAR 160 (599)
Q Consensus 84 ~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p~na~~ 160 (599)
+.|.++..+.+. .-..+.+.+.+.+.+. |..+.+++.+.-.......+..+. ..+.+|+. ++.... + .
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~~~~---~---~ 73 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--GYQLLIASSDDQPDSERQLQQLFRARRCDALFVA-SCLPPE---D---D 73 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--TCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEC-CCCCSS---C---C
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEe-cCcccc---H---H
Confidence 456677666543 3466777777778777 788877766532111122334443 34555543 332111 1 2
Q ss_pred HHHHHhcCCCCCCCCCCcEEEEEeecCc----ch--hHHHHHHHHHHHHHHHCCCeEEecc
Q 007547 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNR----QY--EHFNKIGIVLDEELCKQGGARLVPL 215 (599)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds----~Y--~~f~~~~k~ld~~L~~lGa~~i~~~ 215 (599)
.++.+... +..+.+++.... .| ...-.+++.+-+.|.+.|.+++.=+
T Consensus 74 ~~~~~~~~--------~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i 126 (272)
T 3o74_A 74 SYRELQDK--------GLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSSAPRSIALI 126 (272)
T ss_dssp HHHHHHHT--------TCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHc--------CCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHCCCcEEEEE
Confidence 44455442 344555543211 11 1233467778888888999888644
No 143
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=25.67 E-value=1.8e+02 Score=28.57 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=54.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEE---EEeCCCCCCCchHHHhhhccCC-eEEEEeecCCCCCCChh
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK---VVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDGEPTDN 157 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~---v~dl~d~~~~~~~~~~~l~~~~-~vif~~sTyG~G~~p~n 157 (599)
+.++|.|+| +.+...+..++.+.+.+.+. |..+. .++..+.+... .+.++...+ -+||+..+. ..
T Consensus 138 g~~~ia~i~-~~~~~g~~~~~~~~~~l~~~--g~~v~~~~~~~~~~~d~~~--~~~~l~~~~~d~v~~~~~~------~~ 206 (368)
T 4eyg_A 138 GIKKVATLT-SDYAPGNDALAFFKERFTAG--GGEIVEEIKVPLANPDFAP--FLQRMKDAKPDAMFVFVPA------GQ 206 (368)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHHT--TCEEEEEEEECSSSCCCHH--HHHHHHHHCCSEEEEECCT------TC
T ss_pred CCCEEEEEe-cCchHhHHHHHHHHHHHHHc--CCEEEEEEeCCCCCCcHHH--HHHHHHhcCCCEEEEeccc------hH
Confidence 568999998 45667778888888888876 66532 23344444433 555565433 233332222 15
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEeecC
Q 007547 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (599)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGd 187 (599)
+..|++.+.+.. +.+..+.++|.++
T Consensus 207 a~~~~~~~~~~g-----~~~~~v~~~~~~~ 231 (368)
T 4eyg_A 207 GGNFMKQFAERG-----LDKSGIKVIGPGD 231 (368)
T ss_dssp HHHHHHHHHHTT-----GGGTTCEEEEETT
T ss_pred HHHHHHHHHHcC-----CCcCCceEEecCc
Confidence 677888888754 3333377777653
No 144
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=25.31 E-value=1.3e+02 Score=29.93 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=33.4
Q ss_pred CeeEEEEEeeeecCCCCCCceEEEEEEecCC-C-CccCCCCeEEEeccC
Q 007547 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-G-ITYETGDHVGVYVEN 340 (599)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hle~di~~~-~-l~Y~~GD~l~V~p~N 340 (599)
.+.++|++.+.++. +++.++|..++. . ..|+||.|+-|..+|
T Consensus 8 ~~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 51 (321)
T 2pia_A 8 FLRLKIASKEKIAR-----DIWSFELTDPQGAPLPPFEAGANLTVAVPN 51 (321)
T ss_dssp CEEEEEEEEEEEET-----TEEEEEEECTTCCCCCCCCTTCEEEEECTT
T ss_pred cEEEEEEEEEEcCC-----CEEEEEEEcCCCCcCCCCCCCCEEEEECCC
Confidence 35689999999873 689999998763 2 389999999998765
No 145
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=25.25 E-value=1.6e+02 Score=27.65 Aligned_cols=42 Identities=10% Similarity=0.184 Sum_probs=33.1
Q ss_pred CCeeEEEEEeeeecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 007547 293 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (599)
Q Consensus 293 ~p~~a~V~~~~~L~~~~~~r~~~hle~di~~~--~l~Y~~GD~l~V~p~ 339 (599)
....++|+..+.++. +++.++|.+++. ...|+||.|+-|..+
T Consensus 10 ~~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~ 53 (243)
T 2eix_A 10 EYKKFMLREKQIINH-----NTRLFRFNLHHPEDVVGLPIGQHMSVKAT 53 (243)
T ss_dssp SCEEEEEEEEEEEET-----TEEEEEEECSSTTCCCCCCTTCEEEEEEE
T ss_pred ceEEEEEEEEEEeCC-----CeEEEEEEcCCCCcccCcCCceEEEEEEe
Confidence 345689999999873 578888888753 478999999999865
No 146
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.99 E-value=3.5e+02 Score=25.42 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=60.3
Q ss_pred CCeEEEEEECCCc-hHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc--cCCeEEEEeecCCCCCCChhHH
Q 007547 83 KTKVTVFYGTQTG-TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK--KETLAFFMVATYGDGEPTDNAA 159 (599)
Q Consensus 83 ~~~v~I~YgSqtG-tte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~--~~~~vif~~sTyG~G~~p~na~ 159 (599)
...|.|+..+.+. --..+.+.+.+.+.+. |+.+.+++.+.-.......+..+. ..+.+|+.. +. ++...
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~-~~-----~~~~~ 79 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKAN--KYEALVATSQNSRISEREQILEFVHLKVDAIFITT-LD-----DVYIG 79 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEEC-SC-----TTTTH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec-CC-----hHHHH
Confidence 4567777765543 3456677777778777 788877766432211122344443 345555543 22 12223
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEeecCc-----ch--hHHHHHHHHHHHHHHH-C-CCe-----EEec
Q 007547 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNR-----QY--EHFNKIGIVLDEELCK-Q-GGA-----RLVP 214 (599)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds-----~Y--~~f~~~~k~ld~~L~~-l-Ga~-----~i~~ 214 (599)
..++.+.+. +..+.+++.... .| ...-.+++.+-+.|.+ + |.+ +|.=
T Consensus 80 ~~~~~~~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~ 140 (293)
T 3l6u_A 80 SAIEEAKKA--------GIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVE 140 (293)
T ss_dssp HHHHHHHHT--------TCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred HHHHHHHHc--------CCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEE
Confidence 355666542 345555553211 11 2233456666666666 5 776 7653
No 147
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=24.60 E-value=44 Score=31.37 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=33.0
Q ss_pred CcEEEEEeecCcch--hHHHHHHHHHHHHHHHCCCe--EEecceeecCCCCcHHHHHHH
Q 007547 177 QLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGA--RLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 177 ~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~--~i~~~g~~D~~~~~e~~~~~W 231 (599)
..+++|+-.||.-+ ...+..+..+.+.|+++|++ .+.-....|+...+.+.+..|
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a 61 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCEL 61 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHH
Confidence 46899999999986 34566778899999999987 333223334432333444444
No 148
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=24.47 E-value=2.5e+02 Score=29.42 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=62.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCC---------C--
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGD---------G-- 152 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~---------G-- 152 (599)
.+|.|+ |+.. ...+..|.+.|.+. |+++..+- .+...++ +..+....+.+.+++.++. |
T Consensus 197 ~~vnil-G~~~---~~~~~ei~~lL~~~--Gi~v~~~~-~~~~~~e---l~~~~~A~~ni~~~~~~~~~A~~Le~~~giP 266 (460)
T 2xdq_A 197 PPLVLF-GSLP---DPVVTQLTLELKKQ--GIKVSGWL-PAKRYTE---LPVIDEGYYVAGVNPFLSRTATTLIRRRKCQ 266 (460)
T ss_dssp CCEEEE-SCCC---HHHHHHHHHHHGGG--TCCEEEEE-SCSSGGG---CCCCCTTCEEEESSTTCHHHHHHHHHTTCCE
T ss_pred CcEEEE-EecC---ccHHHHHHHHHHHc--CCeEEEEe-CCCCHHH---HHccccCcEEEEcCHhHHHHHHHHHHHcCCC
Confidence 356655 7753 55567888888877 78776541 2223333 2334555666666655421 1
Q ss_pred ----CCC---hhHHHHHHHHhcCCCCC-------------------CCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHH
Q 007547 153 ----EPT---DNAARFYKWFTEGNDRG-------------------PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCK 206 (599)
Q Consensus 153 ----~~p---~na~~F~~~L~~~~~~~-------------------~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~ 206 (599)
..| ++..+|++.|.+..... ..+.|++++|+|=++..+ -+.+.|.+
T Consensus 267 ~~~~~~P~G~~~T~~~Lr~ia~~~g~~~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~--------~la~~L~e 338 (460)
T 2xdq_A 267 LITAPFPIGPDGTRTWIEQICATFGIQPQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEI--------SLARFLIR 338 (460)
T ss_dssp EECCCCSBHHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHH--------HHHHHHHH
T ss_pred ceecCcCccHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHH--------HHHHHHHH
Confidence 112 34445555554321100 237899999997443332 35556678
Q ss_pred CCCeEEe
Q 007547 207 QGGARLV 213 (599)
Q Consensus 207 lGa~~i~ 213 (599)
+|++.+.
T Consensus 339 lGm~vv~ 345 (460)
T 2xdq_A 339 CGMRVLE 345 (460)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 9998876
No 149
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=23.72 E-value=35 Score=31.84 Aligned_cols=46 Identities=17% Similarity=0.054 Sum_probs=34.9
Q ss_pred CCCcEEEEEeecCcch-hHHHHHHHHHHHHHHHCCCeEEecceeecC
Q 007547 175 LQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~ 220 (599)
.+..+++|+-.||.-+ +.++.....+.+.|++.|++...-....|+
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd 74 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD 74 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC
Confidence 5778999999999876 227778899999999999986654333344
No 150
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=23.10 E-value=5.2e+02 Score=25.03 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEEec
Q 007547 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (599)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i~~ 214 (599)
+....+++.+ ...+++++++ . ++.+.....+.+.+.|++.|.+.+..
T Consensus 127 ~~~~~~~l~~-------~g~~~ia~i~-~--~~~~g~~~~~~~~~~l~~~g~~v~~~ 173 (368)
T 4eyg_A 127 SIIIGDWAAK-------NGIKKVATLT-S--DYAPGNDALAFFKERFTAGGGEIVEE 173 (368)
T ss_dssp HHHHHHHHHH-------TTCCEEEEEE-E--SSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHH-------cCCCEEEEEe-c--CchHhHHHHHHHHHHHHHcCCEEEEE
Confidence 4556677776 3458999998 2 34444556778888999999876543
No 151
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=22.72 E-value=1.8e+02 Score=27.36 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEE---EEeCCCCCCCchHHHhhh--ccCCeEEEEeecCCCCCCCh
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK---VVDLDDYAMDDEQYEEKL--KKETLAFFMVATYGDGEPTD 156 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~---v~dl~d~~~~~~~~~~~l--~~~~~vif~~sTyG~G~~p~ 156 (599)
..++|+++-|... .+.|.+.|.++ |+.+. ++.....+... +....+ ...+.++|.||..
T Consensus 109 ~~~~vL~~rg~~~------~~~L~~~L~~~--G~~v~~~~vY~~~~~~~~~-~~~~~l~~~~~d~v~ftS~s~------- 172 (229)
T 3p9z_A 109 EKKSVLYLRAKEI------VSSLDTILLEH--GIDFKQAVVYENKLKHLTL-SEQNALKPKEKSILIFTAISH------- 172 (229)
T ss_dssp TTCEEEEEEESSC------SSCHHHHHHHT--TCEEEEEEEEEEEECCCCH-HHHHHHSCCTTCEEEECSHHH-------
T ss_pred CCCEEEEECCccc------hHHHHHHHHHC--CCeEEEEEEEEeeCCCccH-HHHHHHhcCCCeEEEEECHHH-------
Confidence 4668877777543 34566667667 77654 33322111111 122233 2446666666554
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEeecCcchhHHHHHHHHHHHHHHHCCCeEE
Q 007547 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (599)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~i 212 (599)
++.|++.+. ++.+.+++++| ....+.|+++|.+..
T Consensus 173 -v~~~~~~~~-------~~~~~~~~aIG-------------~~Ta~~l~~~G~~v~ 207 (229)
T 3p9z_A 173 -AKAFLHYFE-------FLENYTAISIG-------------NTTALYLQEQGIPSY 207 (229)
T ss_dssp -HHHHHHHSC-------CCTTCEEEESS-------------HHHHHHHHHTTCCEE
T ss_pred -HHHHHHHhC-------cccCCEEEEEC-------------HHHHHHHHHcCCCce
Confidence 677877763 25677888777 666778888898643
No 152
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.27 E-value=3.8e+02 Score=23.55 Aligned_cols=65 Identities=12% Similarity=0.208 Sum_probs=38.7
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhHHHHHHHHh
Q 007547 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (599)
Q Consensus 87 ~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na~~F~~~L~ 166 (599)
+++||+ |++...|..++..+... |..+.++ .+..... +.+.+++|+++.+ |+- .......+..+
T Consensus 43 I~i~G~--G~S~~~A~~~~~~l~~~--g~~~~~~--~~~~~~~------~~~~d~vi~iS~s---G~t-~~~~~~~~~ak 106 (180)
T 1jeo_A 43 IFIFGV--GRSGYIGRCFAMRLMHL--GFKSYFV--GETTTPS------YEKDDLLILISGS---GRT-ESVLTVAKKAK 106 (180)
T ss_dssp EEEECC--HHHHHHHHHHHHHHHHT--TCCEEET--TSTTCCC------CCTTCEEEEEESS---SCC-HHHHHHHHHHH
T ss_pred EEEEee--cHHHHHHHHHHHHHHHc--CCeEEEe--CCCcccc------CCCCCEEEEEeCC---CCc-HHHHHHHHHHH
Confidence 445554 78888999999988754 5555443 3333333 5566666665544 333 34455666666
Q ss_pred c
Q 007547 167 E 167 (599)
Q Consensus 167 ~ 167 (599)
+
T Consensus 107 ~ 107 (180)
T 1jeo_A 107 N 107 (180)
T ss_dssp T
T ss_pred H
Confidence 5
No 153
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=22.24 E-value=51 Score=30.69 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=37.6
Q ss_pred CCCcEEEEEeecCcch--hHHHHHHHHHHHHHHH---CCCeEEecceeecCCCCcHHHHHHH
Q 007547 175 LQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCK---QGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 175 l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~---lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
.+..+++|+-.||.-+ ...+..+..+.++|++ +|++.+.-....|+...+.+.+..|
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a 73 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDW 73 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHH
Confidence 4568999999999865 3356677789999998 8998765434445432334444444
No 154
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=22.14 E-value=1e+02 Score=23.36 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=30.6
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD 124 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d 124 (599)
.++++||++-=+.++.+...+.+.+.+. +..+++++++.
T Consensus 2 ~~~~~f~~~~C~~C~~~~~~l~~~~~~~--~~~~~~~~v~~ 40 (80)
T 2k8s_A 2 ASKAIFYHAGCPVCVSAEQAVANAIDPS--KYTVEIVHLGT 40 (80)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHSCTT--TEEEEEEETTT
T ss_pred cceEEEeCCCCCchHHHHHHHHHHHHhc--CCeEEEEEecC
Confidence 3688899888899999888887766555 67788888875
No 155
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=21.62 E-value=1.4e+02 Score=28.27 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=32.4
Q ss_pred eeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 007547 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (599)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~N 340 (599)
..++|+..+.++. +++.++|..++ .+.|+||.|+-|..+.
T Consensus 4 ~~~~V~~~~~~~~-----~~~~l~l~~~~-~~~~~pGq~v~l~~~~ 43 (257)
T 2qdx_A 4 YTERVLSVHHWND-----TLFSFKTTRNP-GLRFKTGQFVMIGLEV 43 (257)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEECCT-TCCCCTTCEEEEEEEE
T ss_pred EEEEEEEEEEcCC-----CeEEEEEeCCC-CCccCCCCEEEEEecC
Confidence 4588999988873 58889988764 5789999999998764
No 156
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=20.97 E-value=1.1e+02 Score=29.26 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=32.7
Q ss_pred CeeEEEEEeeeecCCCCCCceEEEEEEecCCCCccCCCCeEEEecc
Q 007547 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 339 (599)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hle~di~~~~l~Y~~GD~l~V~p~ 339 (599)
.+.++|+..+.++. +++.++|..++ .+.|+||.|+.|..+
T Consensus 19 ~~~~~V~~~~~~~~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~ 58 (271)
T 4fk8_A 19 FDTATVLSVHHWTD-----TLFSFTCTRDQ-ALRFNNGEFTMVGLE 58 (271)
T ss_dssp EEEEEEEEEEEEET-----TEEEEEECCCT-TCCCCTTCEEEEEEE
T ss_pred ceeEEEEEEEEcCC-----CEEEEEEEcCC-CCCcCCCCEEEEEcc
Confidence 35688999998873 68889998765 689999999999865
No 157
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=20.59 E-value=1.8e+02 Score=27.17 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=32.2
Q ss_pred eEEEEEeeeecCCCCCCceEEEEEEecCC--CCccCCCCeEEEeccCC
Q 007547 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVENC 341 (599)
Q Consensus 296 ~a~V~~~~~L~~~~~~r~~~hle~di~~~--~l~Y~~GD~l~V~p~N~ 341 (599)
.++|++.+.++ .+++.++|..++. ...|+||.|+.|..+..
T Consensus 5 ~~~V~~~~~~~-----~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~ 47 (243)
T 4eh1_A 5 TFVVREKQVES-----AYVTSFVLVPADGGAVLDYQPGQYIGIEVTPE 47 (243)
T ss_dssp EEEEEEEEECS-----SSEEEEEEEESSCSCCCCCCTTCEEEEEECCS
T ss_pred EEEEEEEEEcC-----CCeEEEEEEeCCCCcCCCcCCCCEEEEEEecC
Confidence 47888888876 3688999997653 37899999999987653
No 158
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=20.59 E-value=1.1e+02 Score=29.97 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=33.1
Q ss_pred CCeEEEEEEC---------------CCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Q 007547 83 KTKVTVFYGT---------------QTGTAEGFAKALAEEIKARYEKAAVKVVDLDD 124 (599)
Q Consensus 83 ~~~v~I~YgS---------------qtGtte~~A~~la~~l~~~~~g~~v~v~dl~d 124 (599)
+|+|+++-.+ ..|.++.++..+++.|.++ |.++.++....
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~--G~~v~v~~~~~ 57 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLEL--GHEVFLLGAPG 57 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHT--TCEEEEESCTT
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHc--CCeEEEEecCC
Confidence 5788887766 4699999999999999988 89998886654
No 159
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=20.32 E-value=3.3e+02 Score=26.64 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=48.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEE--EeCCCCCCCchHHHhhhccCC-eEEEEeecCCCCCCChhH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV--VDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v--~dl~d~~~~~~~~~~~l~~~~-~vif~~sTyG~G~~p~na 158 (599)
+.++|.|+|++........++.+.+.+.+. |..+.. ++....+... .+.++...+ -+||+..+. ..+
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~--G~~v~~~~~~~~~~d~~~--~~~~l~~~~~d~v~~~~~~------~~a 217 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTEL--GGQVKRVFFRSGDQDFSA--QLSVAMSFNPDAIYITGYY------PEI 217 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCCCCHH--HHHHHHHTCCSEEEECSCH------HHH
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHC--CCEEEEEEeCCCCccHHH--HHHHHHhcCCCEEEEccch------hHH
Confidence 568999999876666777888888888876 665322 3333333333 555565443 234432222 467
Q ss_pred HHHHHHHhcCC
Q 007547 159 ARFYKWFTEGN 169 (599)
Q Consensus 159 ~~F~~~L~~~~ 169 (599)
..|++.+.+..
T Consensus 218 ~~~~~~~~~~g 228 (366)
T 3td9_A 218 ALISRQARQLG 228 (366)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 77888888754
No 160
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=20.30 E-value=6.1e+02 Score=24.72 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=68.8
Q ss_pred cCCCeEEEEEECCCch--HHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCchHHHhhhc-cCCeEEEEeecCCCCCCChh
Q 007547 81 AGKTKVTVFYGTQTGT--AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK-KETLAFFMVATYGDGEPTDN 157 (599)
Q Consensus 81 ~~~~~v~I~YgSqtGt--te~~A~~la~~l~~~~~g~~v~v~dl~d~~~~~~~~~~~l~-~~~~vif~~sTyG~G~~p~n 157 (599)
..++++.|++--..|+ +++..+.+.+.|.+. +..+.++..+.-... .++..++. .++.+|++ =|+|.
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~--~~~~~~~~t~~~~~a-~~~~~~~~~~~d~vv~~---GGDGT---- 75 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAA--FPDLHILHTKEQGDA-TKYCQEFASKVDLIIVF---GGDGT---- 75 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHH--CSEEEEEECCSTTHH-HHHHHHHTTTCSEEEEE---ECHHH----
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHc--CCeEEEEEccCcchH-HHHHHHhhcCCCEEEEE---ccchH----
Confidence 3578899999887765 667888999999888 787777654432211 12333333 33444433 14443
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEeecCcch-hHHHHHHHHHHHHHHH--CCCeEEecceeecC
Q 007547 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCK--QGGARLVPLGLGDD 220 (599)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~--lGa~~i~~~g~~D~ 220 (599)
..+..+-|... -.+..++++=+|..+. ...-.....+.+.+.. .|-.+-.+++.+++
T Consensus 76 l~~v~~~l~~~------~~~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i~~g~~~~iDlg~v~~ 135 (304)
T 3s40_A 76 VFECTNGLAPL------EIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVDVAKANG 135 (304)
T ss_dssp HHHHHHHHTTC------SSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHHHHhhC------CCCCcEEEecCCcHHHHHHHcCCCccHHHHHHHHHhCCeEEEEEEEECC
Confidence 33455555442 1457899988876652 1111111122233322 25556667777753
No 161
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=20.29 E-value=34 Score=31.05 Aligned_cols=54 Identities=13% Similarity=0.256 Sum_probs=34.8
Q ss_pred cEEEEEeecCcch--hHHHHHHHHHHHHHHHCCCeEEecceeecCCCCcHHHHHHH
Q 007547 178 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (599)
Q Consensus 178 ~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~i~~~g~~D~~~~~e~~~~~W 231 (599)
.+++|+-.||.-+ .-++..+..+.++|+++|++...-....|+...+.+.+..|
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 57 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLW 57 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHH
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHH
Confidence 4789999998854 34555677899999999997655433334432333444444
No 162
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=20.15 E-value=2.2e+02 Score=28.84 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEE---eCCCCCCCchHHHhhhccCCeEEEEeecCCCCCCChhH
Q 007547 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (599)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~---dl~d~~~~~~~~~~~l~~~~~vif~~sTyG~G~~p~na 158 (599)
+.++|.|+| +.+...+.+++.+.+.+.+. |.++... +..+.|... .+.++...+.=+++...+ .++.+
T Consensus 163 ~~~~vail~-~~~~~g~~~~~~~~~~~~~~--g~~vv~~~~~~~~~~d~~~--~l~~i~~~~~d~v~~~~~----~~~~~ 233 (419)
T 3h5l_A 163 PNNKIAIIT-GPGIYSVNIANAIRDGAGEY--GYDVSLFETVAIPVSDWGP--TLAKLRADPPAVIVVTHF----YPQDQ 233 (419)
T ss_dssp SSSEEEEEE-CSSHHHHHHHHHHHHHGGGG--TCEEEEEEECCSSCSCCHH--HHHHHHHSCCSEEEECCC----CHHHH
T ss_pred CCCEEEEEE-cCcchhHHHHHHHHHHHHHc--CCeEEEEecCCCCCccHHH--HHHHHHhcCCCEEEEccc----cCchH
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEeecCcch
Q 007547 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY 190 (599)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y 190 (599)
..|++.+.+.. +...-++..|..+..+
T Consensus 234 ~~~~~~~~~~g-----~~~~~~~~~~~~~~~~ 260 (419)
T 3h5l_A 234 ALFMNQFMTDP-----TNSLVYLQYGASLAAF 260 (419)
T ss_dssp HHHHHHHTTSC-----CSCEEEECSGGGSHHH
T ss_pred HHHHHHHHHcC-----CCceEEecCCCCcHHH
No 163
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=20.08 E-value=1.6e+02 Score=22.17 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=25.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Q 007547 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD 124 (599)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~la~~l~~~~~g~~v~v~dl~d 124 (599)
|+|++++.+.=+.++.+...|.+ +.+.+.++.+..+|+++
T Consensus 1 m~v~~f~~~~C~~C~~~~~~l~~-l~~~~~~i~~~~vdi~~ 40 (85)
T 1ego_A 1 MQTVIFGRSGCPYCVRAKDLAEK-LSNERDDFQYQYVDIRA 40 (85)
T ss_dssp CEEEEECCTTSTHHHHHHHHHHH-HHHHHSSCEEEEECHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH-HHhcCCCceEEEEeccc
Confidence 46777766767888887766655 44334467776777654
Done!