Query 007550
Match_columns 599
No_of_seqs 624 out of 4281
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wdy_A 2-5A-dependent ribonucl 100.0 6.7E-29 2.3E-33 250.0 25.6 240 169-431 6-268 (285)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 8.1E-30 2.8E-34 254.9 17.2 215 169-393 11-247 (253)
3 1wdy_A 2-5A-dependent ribonucl 100.0 1E-28 3.5E-33 248.7 22.9 221 170-398 41-282 (285)
4 3aji_A 26S proteasome non-ATPa 100.0 3.2E-29 1.1E-33 245.9 18.4 213 171-393 9-229 (231)
5 3ljn_A Hypothetical protein; a 100.0 3E-29 1E-33 264.0 18.6 224 166-395 18-270 (364)
6 1n11_A Ankyrin; clathrin, BAND 100.0 1.5E-28 5.2E-33 264.9 24.4 290 169-471 15-331 (437)
7 4b93_B Ankyrin repeat domain-c 100.0 5.2E-30 1.8E-34 259.6 12.0 204 169-381 12-230 (269)
8 4g8k_A 2-5A-dependent ribonucl 100.0 1.6E-28 5.6E-33 255.6 22.8 214 169-391 26-261 (337)
9 2xai_A ASB-9, ankyrin repeat a 100.0 8.7E-29 3E-33 248.7 19.7 213 170-397 5-225 (261)
10 1k1a_A B-cell lymphoma 3-encod 100.0 2.5E-29 8.5E-34 247.9 15.4 217 170-393 11-240 (241)
11 1n11_A Ankyrin; clathrin, BAND 100.0 2.6E-28 9E-33 263.0 24.3 296 170-496 82-386 (437)
12 3b7b_A Euchromatic histone-lys 100.0 1.2E-28 4.1E-33 242.7 19.7 209 170-389 13-230 (237)
13 1oy3_D Transcription factor in 100.0 1.2E-28 4.1E-33 248.6 19.8 204 170-380 11-269 (282)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 7.6E-29 2.6E-33 247.8 17.9 212 200-434 7-241 (253)
15 1oy3_D Transcription factor in 100.0 9.4E-29 3.2E-33 249.4 18.4 191 200-399 6-255 (282)
16 3d9h_A CDNA FLJ77766, highly s 100.0 1.7E-28 5.9E-33 250.1 20.5 219 169-399 16-252 (285)
17 3utm_A Tankyrase-1; tankyrase, 100.0 2.6E-28 9E-33 253.5 21.8 221 167-398 23-309 (351)
18 2fo1_E LIN-12 protein; beta-ba 100.0 3.6E-29 1.2E-33 265.1 15.4 215 170-394 127-371 (373)
19 4gpm_A Engineered protein OR26 100.0 1.5E-28 5.1E-33 231.4 17.5 152 235-395 7-162 (169)
20 2xai_A ASB-9, ankyrin repeat a 100.0 1.8E-28 6.1E-33 246.4 19.1 188 202-399 2-196 (261)
21 2f8y_A Notch homolog 1, transl 100.0 8.9E-29 3E-33 241.4 15.6 205 181-395 4-217 (223)
22 4b93_B Ankyrin repeat domain-c 100.0 2.3E-28 7.9E-33 247.5 18.1 191 201-399 9-215 (269)
23 3b7b_A Euchromatic histone-lys 100.0 8.8E-28 3E-32 236.6 21.5 190 200-398 8-206 (237)
24 3d9h_A CDNA FLJ77766, highly s 100.0 3.1E-28 1.1E-32 248.3 17.4 210 170-394 61-279 (285)
25 1k1a_A B-cell lymphoma 3-encod 100.0 1.2E-27 4.2E-32 235.7 19.9 190 200-398 6-212 (241)
26 2dzn_A Probable 26S proteasome 100.0 9.1E-28 3.1E-32 234.8 17.4 201 170-379 4-218 (228)
27 2rfa_A Transient receptor pote 100.0 1.3E-27 4.5E-32 234.7 17.8 186 204-395 4-223 (232)
28 3aji_A 26S proteasome non-ATPa 100.0 4.1E-27 1.4E-31 230.8 21.0 187 203-398 6-201 (231)
29 2fo1_E LIN-12 protein; beta-ba 100.0 3.2E-28 1.1E-32 257.8 14.0 242 170-438 96-368 (373)
30 3eu9_A Huntingtin-interacting 100.0 3E-27 1E-31 232.0 19.6 215 170-395 11-236 (240)
31 2dzn_A Probable 26S proteasome 99.9 7.2E-27 2.5E-31 228.4 21.3 190 204-399 3-205 (228)
32 3kea_A K1L; tropism, ANK repea 99.9 1.5E-27 5.3E-32 243.2 16.9 207 177-399 9-225 (285)
33 4g8k_A 2-5A-dependent ribonucl 99.9 9.2E-27 3.1E-31 242.4 22.9 220 170-397 61-301 (337)
34 1ikn_D Protein (I-kappa-B-alph 99.9 3.2E-28 1.1E-32 240.2 11.1 188 200-396 5-211 (236)
35 3hra_A Ankyrin repeat family p 99.9 4.2E-27 1.4E-31 225.7 18.3 182 203-392 5-201 (201)
36 2etb_A Transient receptor pote 99.9 9E-28 3.1E-32 239.9 13.7 125 270-395 87-247 (256)
37 3utm_A Tankyrase-1; tankyrase, 99.9 9.3E-27 3.2E-31 241.8 21.1 212 170-393 60-333 (351)
38 1s70_B 130 kDa myosin-binding 99.9 1.2E-27 3.9E-32 244.2 13.5 206 169-385 41-281 (299)
39 3ljn_A Hypothetical protein; a 99.9 3.6E-27 1.2E-31 248.1 16.0 210 200-434 17-262 (364)
40 3kea_A K1L; tropism, ANK repea 99.9 1.5E-27 5.2E-32 243.2 12.7 207 170-396 33-248 (285)
41 1s70_B 130 kDa myosin-binding 99.9 1.1E-26 3.8E-31 236.8 16.8 217 174-398 5-261 (299)
42 2pnn_A Transient receptor pote 99.9 1.4E-26 4.9E-31 233.6 15.1 191 200-396 10-261 (273)
43 2f8y_A Notch homolog 1, transl 99.9 6.7E-26 2.3E-30 220.9 19.0 173 217-398 9-187 (223)
44 3jxi_A Vanilloid receptor-rela 99.9 2.9E-26 1E-30 229.3 14.0 125 270-395 90-251 (260)
45 4gpm_A Engineered protein OR26 99.9 7.3E-26 2.5E-30 213.0 15.9 155 170-364 6-164 (169)
46 2rfa_A Transient receptor pote 99.9 2.7E-25 9.2E-30 218.2 19.1 193 231-439 2-220 (232)
47 3eu9_A Huntingtin-interacting 99.9 3.8E-25 1.3E-29 217.0 19.4 217 201-439 7-233 (240)
48 2rfm_A Putative ankyrin repeat 99.9 1.3E-25 4.4E-30 214.4 14.6 132 258-393 56-191 (192)
49 2etb_A Transient receptor pote 99.9 4.4E-26 1.5E-30 227.6 11.8 173 257-440 26-245 (256)
50 2y1l_E Darpin-8.4; hydrolase-i 99.9 4.6E-25 1.6E-29 206.5 17.3 152 232-392 14-169 (169)
51 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.5E-25 1.2E-29 205.0 15.6 151 234-394 7-162 (162)
52 1ikn_D Protein (I-kappa-B-alph 99.9 8.4E-26 2.9E-30 222.8 11.0 196 228-453 4-210 (236)
53 3hra_A Ankyrin repeat family p 99.9 1.3E-24 4.5E-29 208.2 18.6 182 230-432 3-194 (201)
54 3v31_A Ankyrin repeat family A 99.9 7E-25 2.4E-29 204.3 16.2 154 232-394 3-160 (167)
55 4hbd_A KN motif and ankyrin re 99.9 2E-25 7E-30 226.4 12.8 179 205-392 78-273 (276)
56 1d9s_A Cyclin-dependent kinase 99.9 4.6E-25 1.6E-29 198.9 12.1 130 260-394 2-136 (136)
57 3v30_A DNA-binding protein rfx 99.9 1E-24 3.5E-29 204.2 14.8 156 233-397 3-163 (172)
58 1awc_B Protein (GA binding pro 99.9 3E-24 1E-28 197.3 16.0 145 234-388 4-152 (153)
59 2pnn_A Transient receptor pote 99.9 5E-25 1.7E-29 222.2 11.5 171 224-396 5-220 (273)
60 1sw6_A Regulatory protein SWI6 99.9 2.9E-25 9.9E-30 230.9 9.2 190 170-380 99-327 (327)
61 1sw6_A Regulatory protein SWI6 99.9 1.2E-25 4.1E-30 233.8 5.6 140 257-399 117-313 (327)
62 2rfm_A Putative ankyrin repeat 99.9 5.4E-24 1.8E-28 203.1 16.2 155 269-438 31-189 (192)
63 3twr_A Tankyrase-2; ankyrin re 99.9 2.4E-24 8.1E-29 200.3 13.2 122 270-393 39-164 (165)
64 3f6q_A Integrin-linked protein 99.9 2.7E-24 9.3E-29 203.0 13.2 157 233-397 6-166 (179)
65 3jxi_A Vanilloid receptor-rela 99.9 1.2E-24 4.1E-29 217.6 11.2 174 257-438 29-247 (260)
66 3v31_A Ankyrin repeat family A 99.9 3.5E-23 1.2E-27 192.8 17.0 153 272-439 2-158 (167)
67 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.4E-23 1.2E-27 190.4 16.5 148 234-391 4-155 (156)
68 2jab_A H10-2-G3; HER2, darpin, 99.9 1.8E-23 6E-28 188.5 14.0 122 270-392 11-136 (136)
69 3htm_A Speckle-type POZ protei 99.9 8.1E-24 2.8E-28 199.3 10.1 152 45-233 16-167 (172)
70 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.7E-23 2.6E-27 180.1 15.6 122 272-394 1-126 (126)
71 3twr_A Tankyrase-2; ankyrin re 99.9 6.6E-23 2.3E-27 190.5 15.8 129 270-399 5-138 (165)
72 1awc_B Protein (GA binding pro 99.9 7.8E-23 2.7E-27 187.8 15.9 124 273-397 2-128 (153)
73 1ihb_A P18-INK4C(INK6), cyclin 99.9 8.5E-23 2.9E-27 188.8 16.0 150 202-361 4-162 (162)
74 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.1E-22 3.7E-27 190.2 16.8 149 270-433 11-163 (169)
75 3v30_A DNA-binding protein rfx 99.9 1.6E-22 5.6E-27 189.2 17.9 150 273-437 2-156 (172)
76 3c5r_A BARD-1, BRCA1-associate 99.9 6.4E-24 2.2E-28 191.4 7.8 129 260-393 1-133 (137)
77 1bi7_B P16INK4A, MTS1, multipl 99.9 1.8E-23 6.2E-28 193.0 10.2 127 270-398 9-140 (156)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.3E-23 4.3E-28 208.4 9.7 156 231-396 4-166 (239)
79 3f6q_A Integrin-linked protein 99.9 2.3E-22 7.9E-27 189.7 17.1 129 270-399 2-135 (179)
80 3t8k_A Uncharacterized protein 99.9 1.9E-23 6.5E-28 199.6 8.5 149 234-392 8-177 (186)
81 2vge_A RELA-associated inhibit 99.9 2.6E-23 8.8E-28 205.2 9.0 140 257-397 5-151 (229)
82 4hbd_A KN motif and ankyrin re 99.9 1.2E-22 4E-27 206.1 14.1 156 263-436 104-270 (276)
83 1bd8_A P19INK4D CDK4/6 inhibit 99.9 9.6E-22 3.3E-26 180.7 14.7 146 273-435 2-152 (156)
84 3hve_A Gigaxonin; ubiquitin, c 99.9 1.5E-22 5E-27 203.3 9.8 171 44-252 12-184 (256)
85 3aaa_C Myotrophin, protein V-1 99.9 2.5E-22 8.7E-27 177.5 9.9 109 269-378 3-115 (123)
86 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.9E-22 9.9E-27 198.5 11.2 128 270-398 2-132 (239)
87 4eoz_A Speckle-type POZ protei 99.9 6E-23 2E-27 187.7 5.2 138 45-219 7-144 (145)
88 1bi7_B P16INK4A, MTS1, multipl 99.9 4.4E-22 1.5E-26 183.7 9.6 137 231-377 11-152 (156)
89 3i3n_A Kelch-like protein 11; 99.9 2.4E-22 8.1E-27 204.4 7.7 177 44-252 13-192 (279)
90 3hqi_A Speckle-type POZ protei 99.9 1.1E-21 3.7E-26 202.7 11.3 151 45-232 156-306 (312)
91 2vge_A RELA-associated inhibit 99.9 2.3E-24 7.9E-29 212.7 -9.2 112 259-374 43-161 (229)
92 3ehr_A Osteoclast-stimulating 99.9 7.2E-22 2.5E-26 192.9 8.6 128 270-397 70-201 (222)
93 2if5_A Zinc finger and BTB dom 99.8 1.8E-21 6E-26 172.2 9.4 114 44-191 6-119 (120)
94 2ppi_A Gigaxonin; BTB domain, 99.8 2.6E-21 9.1E-26 176.8 10.8 122 38-191 22-143 (144)
95 1d9s_A Cyclin-dependent kinase 99.8 2.2E-21 7.5E-26 174.7 9.6 129 223-361 3-136 (136)
96 3deo_A Signal recognition part 99.8 4.2E-21 1.4E-25 182.1 10.5 112 270-383 41-157 (183)
97 2z8h_A Transcription regulator 99.8 4.9E-21 1.7E-25 173.8 10.5 119 43-196 16-134 (138)
98 1r29_A B-cell lymphoma 6 prote 99.8 1.3E-20 4.5E-25 168.4 11.2 115 44-193 10-125 (127)
99 3ui2_A Signal recognition part 99.8 7.2E-21 2.5E-25 189.3 10.2 109 270-380 42-155 (244)
100 3b84_A Zinc finger and BTB dom 99.8 1.1E-20 3.8E-25 166.9 9.6 111 45-193 6-116 (119)
101 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.3E-20 1.8E-24 154.3 12.2 92 301-393 1-92 (93)
102 2yy9_A Zinc finger and BTB dom 99.8 1.2E-20 4.3E-25 170.4 8.8 115 44-196 6-120 (135)
103 3t8k_A Uncharacterized protein 99.8 8.1E-21 2.8E-25 181.3 6.7 126 273-399 6-151 (186)
104 1dcq_A PYK2-associated protein 99.8 9.4E-20 3.2E-24 185.1 14.8 125 271-396 128-265 (278)
105 1buo_A POZ domain, protein (pr 99.8 2.4E-20 8.2E-25 165.3 8.6 111 45-194 10-120 (121)
106 2vpk_A Myoneurin; transcriptio 99.8 4E-20 1.4E-24 162.5 9.3 110 45-192 4-115 (116)
107 2q81_A MIZ-1 protein; BTB/POZ 99.8 2.2E-20 7.7E-25 164.9 7.5 109 45-192 9-117 (119)
108 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-19 4.4E-24 199.1 14.5 125 274-399 133-270 (497)
109 2jab_A H10-2-G3; HER2, darpin, 99.8 1.6E-19 5.5E-24 162.4 12.5 119 232-359 14-136 (136)
110 1n0r_A 4ANK, 4 ankyrin repeats 99.8 2E-19 6.7E-24 158.1 12.2 120 233-361 3-126 (126)
111 2vkp_A BTB/POZ domain-containi 99.8 4E-20 1.4E-24 160.5 7.4 102 57-193 2-107 (109)
112 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.4E-19 8.2E-24 150.3 11.7 89 272-361 1-93 (93)
113 2aja_A Ankyrin repeat family p 99.8 5.9E-21 2E-25 202.1 2.1 118 270-395 125-251 (376)
114 2b0o_E UPLC1; arfgap, structur 99.8 5.2E-20 1.8E-24 189.1 9.0 137 234-382 153-299 (301)
115 3ohu_A Transcription regulator 99.8 8.6E-21 2.9E-25 169.1 2.7 112 44-190 13-124 (125)
116 3jue_A Arfgap with coiled-coil 99.8 2.2E-19 7.5E-24 189.4 13.8 123 270-393 196-325 (368)
117 2ihc_A Transcription regulator 99.8 1E-20 3.6E-25 168.4 2.4 111 45-191 11-122 (124)
118 2b0o_E UPLC1; arfgap, structur 99.8 3.7E-19 1.3E-23 182.8 13.7 120 273-393 151-283 (301)
119 2l6b_A NR1C; ankyrin, consensu 99.8 9.3E-20 3.2E-24 158.8 7.3 104 269-373 5-112 (115)
120 3fkc_A Transcriptional regulat 99.8 3.9E-19 1.3E-23 156.2 8.8 103 44-185 12-115 (116)
121 3c5r_A BARD-1, BRCA1-associate 99.8 1.5E-18 5.2E-23 155.9 12.5 101 298-399 6-106 (137)
122 3ga1_A Nucleus accumbens-assoc 99.8 1.1E-19 3.7E-24 162.9 3.3 112 45-194 15-127 (129)
123 3aaa_C Myotrophin, protein V-1 99.7 6.9E-18 2.4E-22 148.8 12.7 99 298-397 3-101 (123)
124 3ehr_A Osteoclast-stimulating 99.7 7E-19 2.4E-23 171.6 6.7 109 258-370 94-207 (222)
125 2aja_A Ankyrin repeat family p 99.7 1.2E-19 4E-24 192.1 0.2 121 270-392 89-222 (376)
126 3lvq_E ARF-GAP with SH3 domain 99.7 5.1E-18 1.7E-22 186.4 12.7 113 259-378 154-276 (497)
127 2l6b_A NR1C; ankyrin, consensu 99.7 3.9E-18 1.3E-22 148.4 8.2 100 298-398 5-104 (115)
128 3ui2_A Signal recognition part 99.7 7.9E-19 2.7E-23 174.5 3.4 125 271-397 13-139 (244)
129 3jue_A Arfgap with coiled-coil 99.7 1.3E-17 4.3E-22 175.9 12.7 144 230-380 197-348 (368)
130 2zgd_A 3 repeat synthetic anky 99.7 2.1E-17 7.3E-22 143.1 10.8 91 297-388 19-109 (110)
131 1dcq_A PYK2-associated protein 99.7 3.8E-17 1.3E-21 165.8 13.4 124 233-362 131-264 (278)
132 3m5b_A Zinc finger and BTB dom 99.7 4.7E-18 1.6E-22 149.9 5.2 103 46-193 15-117 (119)
133 3deo_A Signal recognition part 99.7 1.8E-16 6.2E-21 149.9 11.2 97 299-397 41-138 (183)
134 2zgd_A 3 repeat synthetic anky 99.6 7E-16 2.4E-20 133.5 9.8 86 269-355 20-109 (110)
135 2ast_A S-phase kinase-associat 98.9 3.5E-09 1.2E-13 97.7 9.0 116 68-196 3-127 (159)
136 4ajy_C Transcription elongatio 98.6 7E-08 2.4E-12 81.2 6.0 82 68-179 4-96 (97)
137 1fs1_B SKP1, cyclin A/CDK2-ass 98.3 3.1E-06 1.1E-10 76.2 9.3 112 68-196 4-122 (141)
138 2p1m_A SKP1-like protein 1A; F 98.0 1.2E-06 4.1E-11 80.6 1.3 113 68-196 6-126 (160)
139 3drz_A BTB/POZ domain-containi 97.5 0.0003 1E-08 59.9 8.2 97 68-192 8-105 (107)
140 1hv2_A Elongin C, ELC1; protei 97.4 0.00036 1.2E-08 58.5 7.6 93 68-180 6-99 (99)
141 2fnj_C Transcription elongatio 97.0 0.00055 1.9E-08 57.0 4.7 90 68-180 3-96 (96)
142 3v7d_A Suppressor of kinetocho 97.0 0.0024 8.2E-08 58.9 8.9 120 68-196 9-134 (169)
143 3drx_A BTB/POZ domain-containi 95.9 0.024 8.3E-07 53.2 8.8 101 68-196 14-115 (202)
144 1vcb_B Protein (elongin C); tu 95.5 0.014 4.8E-07 49.8 4.9 90 68-180 19-112 (112)
145 3kvt_A Potassium channel prote 89.2 0.3 1E-05 41.7 3.9 85 68-183 7-92 (115)
146 1t1d_A Protein (potassium chan 86.6 0.51 1.8E-05 39.1 3.7 86 68-184 3-90 (100)
147 1s1g_A Potassium voltage-gated 79.5 0.74 2.5E-05 39.8 1.9 86 68-184 15-100 (124)
148 2nz0_B Potassium voltage-gated 73.7 1.4 4.7E-05 38.9 2.0 86 67-183 36-121 (140)
149 1nn7_A Potassium channel KV4.2 66.1 2.7 9.3E-05 35.0 2.1 85 68-183 2-86 (105)
150 2eqx_A Kelch repeat and BTB do 63.1 2.8 9.6E-05 34.7 1.7 52 200-252 10-61 (105)
151 4a1q_A ORF E73; viral protein, 29.0 9.6 0.00033 27.5 -0.4 10 508-517 63-72 (73)
152 3gna_A RAG-1, V(D)J recombinat 23.5 64 0.0022 24.8 3.2 25 544-570 33-57 (96)
153 1gp8_A Protein (scaffolding pr 21.7 62 0.0021 21.4 2.4 17 277-293 17-33 (40)
154 2r9r_B Paddle chimera voltage 20.4 55 0.0019 35.0 3.2 86 68-184 54-141 (514)
No 1
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=6.7e-29 Score=250.04 Aligned_cols=240 Identities=20% Similarity=0.095 Sum_probs=207.9
Q ss_pred HHHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCccc
Q 007550 169 IELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEV 244 (599)
Q Consensus 169 ~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~ 244 (599)
..+|+.|+..+..++++++++.+.+++... ...+.+|||+|+..+. +.|++.++++...+..+.++++.++..+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence 568999999999999999999998876542 3456899999999997 68889999999999999999999998888
Q ss_pred HHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC-------------CCCCchHHHHHH
Q 007550 245 SGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV-------------TLDDAYALHYAA 310 (599)
Q Consensus 245 ~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v-------------n~~g~tpLh~Aa 310 (599)
.+++++| +++|++++.. +..|.||||+|+..|+.+++++|+++| ++ +..|.||||+|+
T Consensus 85 -~~~v~~L----l~~g~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 85 -VKLLKLF----LSKGADVNEC---DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp -HHHHHHH----HHTTCCTTCB---CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred -HHHHHHH----HHcCCCCCcc---CcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 6777777 4568898887 889999999999999999999999999 44 456899999999
Q ss_pred HcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q 007550 311 AYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKE----PAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYI 386 (599)
Q Consensus 311 ~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~----~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~ 386 (599)
..|+.+++++|+...|+++|.+|..|+||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 99999999999998459999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHh-cCCCcccccccHHHHHHHHhccCCCCCccchhhhhcchhHH
Q 007550 387 EATK-QGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMADDFQM 431 (599)
Q Consensus 387 ~l~~-~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~~~~~ 431 (599)
.|++ .|.+++... ..|.+++.++...+...+
T Consensus 237 ~Ll~~~g~~~~~~~--------------~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 237 RLLEQEHIEINDTD--------------SDGKTALLLAVELKLKKI 268 (285)
T ss_dssp HHHHSSSCCTTCCC--------------TTSCCHHHHHHHTTCHHH
T ss_pred HHHhccCCCccccC--------------CCCCcHHHHHHHcCcHHH
Confidence 9999 787765433 344555555555444443
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=8.1e-30 Score=254.86 Aligned_cols=215 Identities=15% Similarity=0.093 Sum_probs=167.7
Q ss_pred HHHHHHHHHcC-------------hHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCcc
Q 007550 169 IELMYASAAFQ-------------MKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNL 231 (599)
Q Consensus 169 ~eLL~~A~~~~-------------i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~ 231 (599)
..+|+.|+..| ..++++++++.+.+.+... ..++.||||+|+.++. +.|+++++++..++..
T Consensus 11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 89 (253)
T 1yyh_A 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQDNM 89 (253)
T ss_dssp -----------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence 46778887766 8899999999999876531 4667999999999997 6889999999999999
Q ss_pred chhhhhhccCcccHHHHHHHHhhhcccccc-cccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHH
Q 007550 232 DDVCLEKELPDEVSGEIKSLRVKSDEECEA-NIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYAL 306 (599)
Q Consensus 232 ~~t~L~~al~~~~~~eI~elL~~~~~~~Ga-~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpL 306 (599)
+.++++.++..+. .+++++|+ .+|+ +++.. +..|.||||+|+..|+.+++++|++.| ++ |..|+|||
T Consensus 90 g~t~L~~A~~~~~-~~~v~~Ll----~~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 90 GRTPLHAAVSADA-QGVFQILI----RNRATDLDAR---MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp SCCHHHHHHHHTC-HHHHHHHH----HSTTSCTTCC---CTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCCHHHHHHHcCC-HHHHHHHH----HcCCCCcccc---CCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 9999999998888 67777774 3454 66666 889999999999999999999999999 55 47899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q 007550 307 HYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYI 386 (599)
Q Consensus 307 h~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~ 386 (599)
|+|+..|+.+++++||..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++.
T Consensus 162 ~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~ 240 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 007550 387 EATKQGQ 393 (599)
Q Consensus 387 ~l~~~G~ 393 (599)
++.....
T Consensus 241 ~l~~~~~ 247 (253)
T 1yyh_A 241 LLDLEHH 247 (253)
T ss_dssp HHHC---
T ss_pred HHHHHhh
Confidence 9987654
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=1e-28 Score=248.66 Aligned_cols=221 Identities=20% Similarity=0.167 Sum_probs=200.3
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVS 245 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~ 245 (599)
.+|++|+..+..++++++++.+.+.+.+ ..++.||||+|+..+. +.|+++++++...+..+.++++.++..+.
T Consensus 41 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~- 117 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK- 117 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC-
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC-
Confidence 5799999999999999999999988775 4667999999999997 67889999999999999999999998888
Q ss_pred HHHHHHHhhhcccccccccccCCC-------CccCCcHHHHHHhcCCHHHHHHHHhC-C-CC---CCCCchHHHHHHHcC
Q 007550 246 GEIKSLRVKSDEECEANIAEVDPM-------HAKRVRRIHKALDSDDVELLKLLLDE-S-NV---TLDDAYALHYAAAYC 313 (599)
Q Consensus 246 ~eI~elL~~~~~~~Ga~in~~d~~-------d~~g~tpLh~A~~~g~~e~v~~LL~~-g-~v---n~~g~tpLh~Aa~~g 313 (599)
.+++++| +.+|++++..+.. +..|.||||+|+..|+.+++++|++. | ++ +..|.||||+|+..+
T Consensus 118 ~~~~~~L----l~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~ 193 (285)
T 1wdy_A 118 VKALKFL----YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193 (285)
T ss_dssp HHHHHHH----HHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred HHHHHHH----HHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcc
Confidence 6777777 4568888766432 67899999999999999999999998 7 44 478999999999999
Q ss_pred C----HHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCChhHHHHH
Q 007550 314 N----PKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLS-KGACASETTSDGQTAVAICRRMTRRKDYIEA 388 (599)
Q Consensus 314 ~----~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l 388 (599)
+ .+++++|+..| +++|.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..|+.+++++|
T Consensus 194 ~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~L 272 (285)
T 1wdy_A 194 DDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272 (285)
T ss_dssp CTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence 9 89999999998 9999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HhcCCCcccc
Q 007550 389 TKQGQETNKD 398 (599)
Q Consensus 389 ~~~G~~~~~~ 398 (599)
++.|+++...
T Consensus 273 l~~Ga~~~~~ 282 (285)
T 1wdy_A 273 CKRGASTDCG 282 (285)
T ss_dssp HHHSSCSCCS
T ss_pred HHcCCCCCcc
Confidence 9999988654
No 4
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=3.2e-29 Score=245.93 Aligned_cols=213 Identities=18% Similarity=0.084 Sum_probs=189.3
Q ss_pred HHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccHH
Q 007550 171 LMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVSG 246 (599)
Q Consensus 171 LL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~ 246 (599)
+|+.|+..|..+.++.++......... ...++.||||+|+..+. +.|++.++++..++..+.++++.++..+. .
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~ 86 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX-D 86 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC-H
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhc-CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH-H
Confidence 588888888888777777665543321 15667999999999997 67889999999999999999999998888 6
Q ss_pred HHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHH
Q 007550 247 EIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVL 322 (599)
Q Consensus 247 eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL 322 (599)
+++++| +++|++++.. +..|.||||+|+..|+.+++++|+++| ++ +..|.||||+|+..|+.+++++|+
T Consensus 87 ~~v~~L----l~~g~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 87 EIVKAL----LVKGAHVNAV---NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHHHHH----HHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHH----HHcCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 777777 4568888877 889999999999999999999999999 54 478999999999999999999999
Q ss_pred HcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 323 NMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 323 ~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++..+++++.+.|.
T Consensus 160 ~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 160 FYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp HTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 998 9999999999999999999999999999999999999999999999999999999999999988765
No 5
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=3e-29 Score=263.98 Aligned_cols=224 Identities=13% Similarity=0.047 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccC
Q 007550 166 NYAIELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELP 241 (599)
Q Consensus 166 d~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~ 241 (599)
.....+|++|+..|..++++++++.+++++.+ ...+.||||+|+..+. +.|+++++++.. ..+.++++.++.
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~ 93 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHH
Confidence 34578999999999999999999999998776 5667999999999997 577777774443 468899999998
Q ss_pred cccHHHHHHHHhhhcccccccccc--------------cCCCCccCCcHHHHHHhcC--CHHHHHHHHhCC-CC---CCC
Q 007550 242 DEVSGEIKSLRVKSDEECEANIAE--------------VDPMHAKRVRRIHKALDSD--DVELLKLLLDES-NV---TLD 301 (599)
Q Consensus 242 ~~~~~eI~elL~~~~~~~Ga~in~--------------~d~~d~~g~tpLh~A~~~g--~~e~v~~LL~~g-~v---n~~ 301 (599)
.+. .+++++|++.....|++++. .+..+..|.||||+|+..| +.++|++|+++| ++ |..
T Consensus 94 ~g~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~ 172 (364)
T 3ljn_A 94 ANK-TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172 (364)
T ss_dssp TTC-HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred cCC-HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence 888 77777775543333666665 0012789999999999999 999999999999 55 478
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCC-----ccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 007550 302 DAYALHYAAAYCNPKVFKEVLNMGLAD-----LNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAIC 376 (599)
Q Consensus 302 g~tpLh~Aa~~g~~~~v~~LL~~g~ad-----vn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A 376 (599)
|+||||+|+..|+.+++++||..| ++ +|.+|..|+||||+|+..|+.+++++||++|++++.+|.+|+||||+|
T Consensus 173 g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 173 DETPLMRAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999998 88 999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHhcCCCc
Q 007550 377 RRMTRRKDYIEATKQGQET 395 (599)
Q Consensus 377 ~~~g~~~~i~~l~~~G~~~ 395 (599)
+..|+.+++++|++.|..+
T Consensus 252 ~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 252 VRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp HHTCCHHHHHHHHHHSCHH
T ss_pred HHhChHHHHHHHHHcCCch
Confidence 9999999999999998755
No 6
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=1.5e-28 Score=264.91 Aligned_cols=290 Identities=17% Similarity=0.109 Sum_probs=233.2
Q ss_pred HHHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCccc
Q 007550 169 IELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEV 244 (599)
Q Consensus 169 ~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~ 244 (599)
..+|++|+.+|..++++++++.+++.+.. ...+.||||+|+..+. +.|++.+++++.++..+.++++.++..+.
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 45899999999999999999999887765 4567899999999997 67888999999999999999999998888
Q ss_pred HHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-C---CCCCCchHHHHHHHcCCHHHHHH
Q 007550 245 SGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-N---VTLDDAYALHYAAAYCNPKVFKE 320 (599)
Q Consensus 245 ~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~---vn~~g~tpLh~Aa~~g~~~~v~~ 320 (599)
.+++++| +++|++++.. +..|.||||+|+..|+.+++++|+++| + .+..|.||||+|+.+|+.+++++
T Consensus 93 -~~~v~~L----l~~ga~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 164 (437)
T 1n11_A 93 -TNMVKLL----LENNANPNLA---TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164 (437)
T ss_dssp -HHHHHHH----HHHTCCTTCC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHH----HhCCCCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 7788887 4568898887 889999999999999999999999998 3 35789999999999999999999
Q ss_pred HHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccc---
Q 007550 321 VLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNK--- 397 (599)
Q Consensus 321 LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~--- 397 (599)
|+..| +++|..+..|.||||+|+..|+.+++++|+++|++++..+.+|+||||+|+..|+.++++.+++.|.+++.
T Consensus 165 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 243 (437)
T 1n11_A 165 LLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243 (437)
T ss_dssp HHHTT-CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999998865542
Q ss_pred ----------ccccHHHHHHHHhccC------CCCCccchhhhhcchhHHHHHhhhhhhhHhhhcCcchhhHHhhhhccc
Q 007550 398 ----------DRLCIDVLEREMRRNS------MSGNLALSSEVMADDFQMKLNYLENRVAFARLLFPSEARVAMHIADAD 461 (599)
Q Consensus 398 ----------~~~~~~ile~~~~~~p------~~~~~~~~~~~~~~~~~~~l~~le~~v~~~r~l~~~ea~~~~~ia~~~ 461 (599)
.....++++..+...+ ..+.+++..+...+...+..+++++...+- .....+..++++|...
T Consensus 244 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~ 321 (437)
T 1n11_A 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--ATTRMGYTPLHVASHY 321 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCSSCCCHHHHHHHS
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC--CCCCCCCCHHHHHHHc
Confidence 2356777777655432 223444455554444554444444432221 1123455677888777
Q ss_pred CCcccccccc
Q 007550 462 ATNFYTGLSA 471 (599)
Q Consensus 462 ~t~e~~~~~~ 471 (599)
+..+....+.
T Consensus 322 g~~~~v~~Ll 331 (437)
T 1n11_A 322 GNIKLVKFLL 331 (437)
T ss_dssp SCSHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 7777665544
No 7
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.2e-30 Score=259.61 Aligned_cols=204 Identities=22% Similarity=0.204 Sum_probs=157.8
Q ss_pred HHHHHHHHHcChHHHHHHHHHhchhhhhh------cccCCcHHHHHHHHhcCh-----HHHHhccccccccCccchhhhh
Q 007550 169 IELMYASAAFQMKELVLLFQRRLLNFVEK------ALVEDVIPILVAAFHCQL-----NQLRSHCVQRVVRSNLDDVCLE 237 (599)
Q Consensus 169 ~eLL~~A~~~~i~~L~~~~~~~l~~~~~k------~~~~n~~t~L~~A~~~~~-----~~Ll~~~~~~i~~~~~~~t~L~ 237 (599)
.+.|+.|+..|..++++++++.+.+.... .....+.+||+.|+.++. ..|++.+++++.++..|.|++|
T Consensus 12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh 91 (269)
T 4b93_B 12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLH 91 (269)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 56788999999999999999887653221 113456789999987764 4688899999999999999999
Q ss_pred hccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcC
Q 007550 238 KELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYC 313 (599)
Q Consensus 238 ~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g 313 (599)
.|+..+. .+++++| +.+|++++.. +..|.||||+|+..++.+++++|++.| ++ |..|+||||+|+..|
T Consensus 92 ~A~~~g~-~~~v~~L----l~~~a~~~~~---~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 92 VAALHGR-ADLIPLL----LKHGANAGAR---NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163 (269)
T ss_dssp HHHHTTC-TTHHHHH----HHTTCCTTCC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred HHHHcCc-HHHHHHH----HhcCCCcCcc---CCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence 9888887 6677777 4568888877 889999999999999999999999999 55 478999999999999
Q ss_pred CHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 007550 314 NPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTR 381 (599)
Q Consensus 314 ~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~ 381 (599)
+.+++++||+.| +++|.++..|+||||+|+..|+.++|++||++|||++.+|.+|+||||+|+++++
T Consensus 164 ~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 164 HHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred CHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 999999999997 9999999999999999999999999999999999999999999999999987654
No 8
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=1.6e-28 Score=255.60 Aligned_cols=214 Identities=20% Similarity=0.096 Sum_probs=153.5
Q ss_pred HHHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCccc
Q 007550 169 IELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEV 244 (599)
Q Consensus 169 ~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~ 244 (599)
-.+|+.|+..|..++++++++.|++++.++ ..++.||||+|+.++. +.|+++++++..++..+.++++.+.....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 104 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS 104 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence 468999999999999999999999987642 3457899999999997 68889998888877777777766555555
Q ss_pred HHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CCC-------------CCCchHHHHHH
Q 007550 245 SGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NVT-------------LDDAYALHYAA 310 (599)
Q Consensus 245 ~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn-------------~~g~tpLh~Aa 310 (599)
..+...+ ..++++++.. |..|.||||+|+..|+.+++++|+++| +++ ..|.||||+|+
T Consensus 105 -~~~~~~~----~~~~~~~~~~---d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~ 176 (337)
T 4g8k_A 105 -VKLLKLF----LSKGADVNEC---DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 176 (337)
T ss_dssp -HHHHHHH----HTTTCCTTCB---CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH
T ss_pred -chhhHHh----hhccchhhhh---ccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHH
Confidence 3333333 2345666665 677777777777777777777777776 332 34677777777
Q ss_pred HcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q 007550 311 AYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKE----PAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYI 386 (599)
Q Consensus 311 ~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~----~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~ 386 (599)
.+|+.+++++||...|+++|.+|..|+|+||.++..+. ..++++|+++|+++|.+|.+|+||||+|+..|+.+.+.
T Consensus 177 ~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~ 256 (337)
T 4g8k_A 177 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 256 (337)
T ss_dssp HHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence 77777777777765447777777777777776655433 34666777777777777777777777777777777777
Q ss_pred HHHhc
Q 007550 387 EATKQ 391 (599)
Q Consensus 387 ~l~~~ 391 (599)
.|++.
T Consensus 257 ~Ll~~ 261 (337)
T 4g8k_A 257 RLLEQ 261 (337)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 66653
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.96 E-value=8.7e-29 Score=248.70 Aligned_cols=213 Identities=16% Similarity=0.065 Sum_probs=189.3
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVS 245 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~ 245 (599)
.+|+.|+..|..++++++++.+.+++.+ ..++.||||+|+..+. +.|++++++++..+..+.++++.++..+.
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~- 81 (261)
T 2xai_A 5 SPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS- 81 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC-
Confidence 4799999999999999999999988776 4577999999999997 68889999999999999999999998888
Q ss_pred HHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHH
Q 007550 246 GEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEV 321 (599)
Q Consensus 246 ~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~L 321 (599)
.+++++| +++|++++. +..|.||||+|+..|+.+++++|+++| ++ |..|.||||+|+..|+.+++++|
T Consensus 82 ~~~v~~L----l~~g~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (261)
T 2xai_A 82 WDCVNLL----LQHGASVQP----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 153 (261)
T ss_dssp HHHHHHH----HHTTCCSSC----SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH----HHCCCCCCC----CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHH
Confidence 6777777 456888774 456999999999999999999999999 55 47899999999999999999999
Q ss_pred HHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccc
Q 007550 322 LNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNK 397 (599)
Q Consensus 322 L~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~ 397 (599)
|+.| +++|. +..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.. ..++..+++.+..+..
T Consensus 154 l~~g-~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l 225 (261)
T 2xai_A 154 LESG-ADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSL 225 (261)
T ss_dssp HHHT-CCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCH
T ss_pred HHcC-CCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcccc--ccHHHHHHhccCCccH
Confidence 9998 99995 88999999999999999999999999999999999999999999954 4588888888765543
No 10
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.96 E-value=2.5e-29 Score=247.87 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=182.0
Q ss_pred HHHHHHHHcChHHHHHHHHH----hchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccC
Q 007550 170 ELMYASAAFQMKELVLLFQR----RLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELP 241 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~----~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~ 241 (599)
.+|+.|+..|..++++++++ .+.+++.+ ...+.||||+|+.++. +.|++.++++...+..+.++++.++.
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc--cccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 57999999999998888876 55565554 4567899999999997 67888999999999999999999988
Q ss_pred cccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CCC----CCCchHHHHHHHcCCHH
Q 007550 242 DEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NVT----LDDAYALHYAAAYCNPK 316 (599)
Q Consensus 242 ~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn----~~g~tpLh~Aa~~g~~~ 316 (599)
.+. .+++++|.......+.+++.. +..|.||||+|+..|+.+++++|++.| +++ ..|.||||+|+..|+.+
T Consensus 89 ~~~-~~~~~~Ll~~~~~~~~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 89 HRS-PTCLRALLDSAAPGTLDLEAR---NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp TTC-HHHHHHHHHHSCTTSCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred cCC-HHHHHHHHHcCCCcccccccc---CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence 888 667776644322222256655 889999999999999999999999999 544 57999999999999999
Q ss_pred HHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 317 VFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 317 ~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.+.+.++
T Consensus 165 ~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 165 MVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999999997 9999999999999999999999999999999999999999999999999999999999988877654
No 11
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=2.6e-28 Score=263.03 Aligned_cols=296 Identities=18% Similarity=0.132 Sum_probs=194.8
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVS 245 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~ 245 (599)
.+|++|+..+..++++++++++++.+.. ...+.+|||+|+..+. ..|++.+.+....+..+.++++.++..+.
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~- 158 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLENNANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK- 158 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC-
T ss_pred CHHHHHHHCCCHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCC-
Confidence 3677777777777777777777766554 3445677777777775 45666666666666667777777776666
Q ss_pred HHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHH
Q 007550 246 GEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEV 321 (599)
Q Consensus 246 ~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~L 321 (599)
.+++++| +++|++++.. +..|.||||+|+..|+.+++++|+++| ++ +..|.||||+|+..|+.++++.|
T Consensus 159 ~~~v~~L----l~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 159 VRVAELL----LERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HHHHHHH----HHTTCCTTCC---CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH----HhCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 5566665 3456666665 667777777777777777777777777 33 35677777777777777777777
Q ss_pred HHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccccccc
Q 007550 322 LNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDRLC 401 (599)
Q Consensus 322 L~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~ 401 (599)
+..| +++|..+..|+||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.++++.|++.|.+++...
T Consensus 232 l~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-- 308 (437)
T 1n11_A 232 LQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT-- 308 (437)
T ss_dssp HHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC--
T ss_pred HHcC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCC--
Confidence 7776 7777777777777777777777777777777777777777777777777777777777777777776544322
Q ss_pred HHHHHHHHhccCCCCCccchhhhhcchhHHHHHhhhhhhhHhhhcCcchhhHHhhhhcccCCcccccccccCCCCCCCCC
Q 007550 402 IDVLEREMRRNSMSGNLALSSEVMADDFQMKLNYLENRVAFARLLFPSEARVAMHIADADATNFYTGLSASKSKGSSGNL 481 (599)
Q Consensus 402 ~~ile~~~~~~p~~~~~~~~~~~~~~~~~~~l~~le~~v~~~r~l~~~ea~~~~~ia~~~~t~e~~~~~~~~~~~~~~~~ 481 (599)
..|.+++..+...++..+..+++++...+.. ....+..++++|...+..+....+.. .+...
T Consensus 309 ------------~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~--~~~~g~t~L~~A~~~g~~~iv~~Ll~----~ga~~ 370 (437)
T 1n11_A 309 ------------RMGYTPLHVASHYGNIKLVKFLLQHQADVNA--KTKLGYSPLHQAAQQGHTDIVTLLLK----NGASP 370 (437)
T ss_dssp ------------SSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCS
T ss_pred ------------CCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHCChHHHHHHHHH----CcCCC
Confidence 3445556666666666666566655433211 12335567888877777776655442 11222
Q ss_pred cccCC-CCCcHHHHHH
Q 007550 482 KEVDL-NETPSMQAKR 496 (599)
Q Consensus 482 ~~~~l-~e~p~~~~~~ 496 (599)
...+- +.||...+.+
T Consensus 371 ~~~~~~g~t~l~~A~~ 386 (437)
T 1n11_A 371 NEVSSDGTTPLAIAKR 386 (437)
T ss_dssp CCCCSSSCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHH
Confidence 22222 3588766543
No 12
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=1.2e-28 Score=242.75 Aligned_cols=209 Identities=18% Similarity=0.172 Sum_probs=184.8
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVS 245 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~ 245 (599)
.+|+.|+..|..++++++++.+.+++.. ..++.+|||+|+..+. +.|++.++++..++..+.++++.++..+.
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~- 89 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH- 89 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTC-
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC-
Confidence 5799999999999999999999988775 4567899999999997 67888889888888999999999988888
Q ss_pred HHHHHHHhhhccccc-ccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHH
Q 007550 246 GEIKSLRVKSDEECE-ANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKE 320 (599)
Q Consensus 246 ~eI~elL~~~~~~~G-a~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~ 320 (599)
.+++++|. .+| ++++.. +..|.||||+|+..|+.+++++|++.| ++ +..|.||||+|+..|+.+++++
T Consensus 90 ~~~~~~Ll----~~~~~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 90 YEVVQYLL----SNGQMDVNCQ---DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHHHHHH----TTTCCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHH----hCCCCCcccC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 67777773 345 566666 889999999999999999999999999 54 4789999999999999999999
Q ss_pred HHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHH
Q 007550 321 VLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEAT 389 (599)
Q Consensus 321 LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~ 389 (599)
|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+...+..+.
T Consensus 163 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 163 LLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99998 999999999999999999999999999999999999999999999999999998876554444
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.96 E-value=1.2e-28 Score=248.57 Aligned_cols=204 Identities=16% Similarity=0.105 Sum_probs=165.3
Q ss_pred HHHHHHHHcChHHHHHHHHHhchh---hhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCc
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLN---FVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPD 242 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~---~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~ 242 (599)
.+|++|+..+..++++++++.+.+ ++.+ ...+.||||+|+..+. +.|+++++++..++..+.++++.++..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~ 88 (282)
T 1oy3_D 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ--NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCccccccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 579999999999999999999887 4443 4667999999999997 688999999999999999999999998
Q ss_pred ccHHHHHHHHhhhcc-------------------------------------------cccccccccCCCCccCCcHHHH
Q 007550 243 EVSGEIKSLRVKSDE-------------------------------------------ECEANIAEVDPMHAKRVRRIHK 279 (599)
Q Consensus 243 ~~~~eI~elL~~~~~-------------------------------------------~~Ga~in~~d~~d~~g~tpLh~ 279 (599)
+. .+++++|...+. ..|++++.. +..|.||||+
T Consensus 89 ~~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~t~L~~ 164 (282)
T 1oy3_D 89 RA-HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE---NYDGHTPLHV 164 (282)
T ss_dssp TC-HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC---CTTSCCHHHH
T ss_pred CC-cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc---CCCCcCHHHH
Confidence 88 677777743210 112234444 8899999999
Q ss_pred HHhcCCHHHHHHHHhCC-CCC----CCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHH
Q 007550 280 ALDSDDVELLKLLLDES-NVT----LDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVT 354 (599)
Q Consensus 280 A~~~g~~e~v~~LL~~g-~vn----~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~ 354 (599)
|+..|+.++|++|+++| +++ ..|+||||+|+..|+.+++++||.+| +++|.+|..|+||||+|+.+|+.+++++
T Consensus 165 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~ 243 (282)
T 1oy3_D 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARL 243 (282)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence 99999999999999999 554 34999999999999999999999997 9999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcC
Q 007550 355 LLSKGACASETTSDGQTAVAICRRMT 380 (599)
Q Consensus 355 LL~~Gad~~~~d~~G~TpL~~A~~~g 380 (599)
|+++||+++.+|..|.|||++|....
T Consensus 244 Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 244 LRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHTTCCCCCCC--------------
T ss_pred HHHcCCCcCcCCCcccccccccCCcc
Confidence 99999999999999999999998764
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=7.6e-29 Score=247.78 Aligned_cols=212 Identities=15% Similarity=0.099 Sum_probs=160.4
Q ss_pred cCCcHHHHHHHHhcC-------------h----HHHHhccccccc-cCccchhhhhhccCcccHHHHHHHHhhhcccccc
Q 007550 200 VEDVIPILVAAFHCQ-------------L----NQLRSHCVQRVV-RSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEA 261 (599)
Q Consensus 200 ~~n~~t~L~~A~~~~-------------~----~~Ll~~~~~~i~-~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga 261 (599)
..++.||||+|+..| . +.|++.+.++.. .+..+.|++|.++..+. .+++++| +++|+
T Consensus 7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~L----l~~g~ 81 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR-SDAAKRL----LEASA 81 (253)
T ss_dssp ---------------------------------------------CCCTTSCCHHHHHHHTTC-HHHHHHH----HHTTC
T ss_pred CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCC-HHHHHHH----HHcCC
Confidence 467899999999876 3 577888888765 47889999999998888 6777777 45688
Q ss_pred cccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC--CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCC
Q 007550 262 NIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES--NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARG 336 (599)
Q Consensus 262 ~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g--~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G 336 (599)
+++.. +..|.||||+|+..|+.+++++|+++| ++ +..|.||||+|+..|+.+++++|+..| +++|.+|..|
T Consensus 82 ~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g 157 (253)
T 1yyh_A 82 DANIQ---DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLG 157 (253)
T ss_dssp CTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCBCTTS
T ss_pred CCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC-CCCCCcCCCC
Confidence 99887 899999999999999999999999998 33 478999999999999999999999998 9999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCC
Q 007550 337 HTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSG 416 (599)
Q Consensus 337 ~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~ 416 (599)
+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|+++.... ..|
T Consensus 158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d--------------~~g 223 (253)
T 1yyh_A 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD--------------HMD 223 (253)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------TTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc--------------cCC
Confidence 999999999999999999999999999999999999999999999999999999998776433 334
Q ss_pred CccchhhhhcchhHHHHH
Q 007550 417 NLALSSEVMADDFQMKLN 434 (599)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~ 434 (599)
.+++.++...+...+..+
T Consensus 224 ~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 224 RLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp CCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHH
Confidence 555555555554444333
No 15
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.96 E-value=9.4e-29 Score=249.37 Aligned_cols=191 Identities=19% Similarity=0.132 Sum_probs=173.1
Q ss_pred cCCcHHHHHHHHhcCh----HHHHhcccc---ccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCcc
Q 007550 200 VEDVIPILVAAFHCQL----NQLRSHCVQ---RVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAK 272 (599)
Q Consensus 200 ~~n~~t~L~~A~~~~~----~~Ll~~~~~---~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~ 272 (599)
..++.||||+|+.++. +.|++.+.+ +..++..+.|++|.++..+. .+++++| +++|++++.. +..
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~L----l~~ga~~~~~---~~~ 77 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE-ASTVEKL----YAAGAGVLVA---ERG 77 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTC-HHHHHHH----HHTTCCSSCC---CTT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCC-HHHHHHH----HHcCCCCCCC---CCC
Confidence 4677999999999997 577777776 77888899999999998888 7777777 4579999887 889
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCC-C--------------------------------------------------CCCC
Q 007550 273 RVRRIHKALDSDDVELLKLLLDES-N--------------------------------------------------VTLD 301 (599)
Q Consensus 273 g~tpLh~A~~~g~~e~v~~LL~~g-~--------------------------------------------------vn~~ 301 (599)
|+||||+|+..|+.+++++|+++| + .+..
T Consensus 78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 1oy3_D 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157 (282)
T ss_dssp SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence 999999999999999999999976 2 1357
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCC-CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 007550 302 DAYALHYAAAYCNPKVFKEVLNMGLADLNLKNAR-GHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMT 380 (599)
Q Consensus 302 g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~-G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g 380 (599)
|.||||+|+..|+.+++++||..| +++|.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 158 g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 158 GHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence 999999999999999999999998 999999865 999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCCCccccc
Q 007550 381 RRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 381 ~~~~i~~l~~~G~~~~~~~ 399 (599)
+.+++++|++.|++++...
T Consensus 237 ~~~~v~~Ll~~ga~~~~~~ 255 (282)
T 1oy3_D 237 NPILARLLRAHGAPEPEDG 255 (282)
T ss_dssp CHHHHHHHHHTTCCCCCCC
T ss_pred CcHHHHHHHHcCCCcCcCC
Confidence 9999999999999887544
No 16
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=250.11 Aligned_cols=219 Identities=15% Similarity=0.047 Sum_probs=175.7
Q ss_pred HHHHHHHHHcChH-HHHHHHHHh---------chh-hhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccch
Q 007550 169 IELMYASAAFQMK-ELVLLFQRR---------LLN-FVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDD 233 (599)
Q Consensus 169 ~eLL~~A~~~~i~-~L~~~~~~~---------l~~-~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~ 233 (599)
..++|.|+..|.. ++.+..... ... .+.+ ..++.|+||+|+..+. +.|++.+++++.++..+.
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~ 93 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV 93 (285)
T ss_dssp --------------------------CCSEECCCCTTCSS--SCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC--CccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 4578888888874 444432221 011 1222 5667899999999997 678889999999999999
Q ss_pred hhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC--CCCCchHHHHHH
Q 007550 234 VCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV--TLDDAYALHYAA 310 (599)
Q Consensus 234 t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v--n~~g~tpLh~Aa 310 (599)
|+++.++..+. .+++++| +++|++++.. |..|.||||+|+..|+.+++++|++.| ++ +..|.||||+|+
T Consensus 94 t~L~~A~~~g~-~~~v~~L----l~~ga~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~ 165 (285)
T 3d9h_A 94 SPLHEACLGGH-LSCVKIL----LKHGAQVNGV---TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 165 (285)
T ss_dssp CHHHHHHHTTC-HHHHHHH----HHTTCCSSCC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHH
T ss_pred CHHHHHHHCCc-HHHHHHH----HHCCCCCCCC---CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Confidence 99999998888 6777877 4568899887 899999999999999999999999999 44 467999999999
Q ss_pred HcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHh
Q 007550 311 AYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATK 390 (599)
Q Consensus 311 ~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~ 390 (599)
..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++. +..|+||||+|+..|+.+++++|++
T Consensus 166 ~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 166 RRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp HHTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999998 99999999999999999999999999999999999995 8999999999999999999999999
Q ss_pred cCCCccccc
Q 007550 391 QGQETNKDR 399 (599)
Q Consensus 391 ~G~~~~~~~ 399 (599)
.|.++....
T Consensus 244 ~gad~~~~d 252 (285)
T 3d9h_A 244 FGADTQAKN 252 (285)
T ss_dssp TTCCTTCCC
T ss_pred CCCCCCCcC
Confidence 999776533
No 17
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=2.6e-28 Score=253.54 Aligned_cols=221 Identities=23% Similarity=0.151 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHcChHHHHHH-HHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccC
Q 007550 167 YAIELMYASAAFQMKELVLL-FQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELP 241 (599)
Q Consensus 167 ~~~eLL~~A~~~~i~~L~~~-~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~ 241 (599)
+-.+.|+.|+..|..+.+.. +...+.+.+.+ ...+.||||+|+.++. +.|+++++++..++..+.+++|.++.
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHAS--DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS--STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 34456777777777665554 44556666554 4667899999999997 68899999999999999999999998
Q ss_pred cccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CCC---------------------
Q 007550 242 DEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NVT--------------------- 299 (599)
Q Consensus 242 ~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn--------------------- 299 (599)
.+. .+++++| +++|++++.. +..|.||||+|+..|+.+++++|+++| +++
T Consensus 101 ~g~-~~iv~~L----l~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 101 YGH-YEVTELL----LKHGACVNAM---DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp TTC-HHHHHHH----HHTTCCTTCC---CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred CCC-HHHHHHH----HHCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence 888 7788888 4568899887 889999999999999999999999998 432
Q ss_pred ------------------------------------CCCchHHHHHHHc---CCHHHHHHHHHcCCCCccCcCCCCChHH
Q 007550 300 ------------------------------------LDDAYALHYAAAY---CNPKVFKEVLNMGLADLNLKNARGHTVL 340 (599)
Q Consensus 300 ------------------------------------~~g~tpLh~Aa~~---g~~~~v~~LL~~g~advn~~d~~G~TpL 340 (599)
..|.||||+|+.. +..+++++|+..| +++|.+|..|+|||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L 251 (351)
T 3utm_A 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPL 251 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTCCCHH
T ss_pred HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCCCCHH
Confidence 4578999999999 5578999999998 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccc
Q 007550 341 HVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 341 h~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~ 398 (599)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.|+++...
T Consensus 252 ~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~ 309 (351)
T 3utm_A 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999987653
No 18
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=3.6e-29 Score=265.12 Aligned_cols=215 Identities=15% Similarity=0.125 Sum_probs=191.1
Q ss_pred HHHHHHHHcChHHHHHHH--------HHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhh
Q 007550 170 ELMYASAAFQMKELVLLF--------QRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLE 237 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~--------~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~ 237 (599)
.+|++|+..+..++++++ ++.+++++.+ ..++.||||+|+.++. +.|+++++++...+..+.++++
T Consensus 127 t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~ 204 (373)
T 2fo1_E 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH 204 (373)
T ss_dssp CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHH
Confidence 578999988876555544 4788888776 4667999999999997 6889999999999999999999
Q ss_pred hccCcccHHHHHHHHhhhccccc---ccccccCCCCccCCcHHHHHHhcC---CHHHHHHHHhCC-CCC-----------
Q 007550 238 KELPDEVSGEIKSLRVKSDEECE---ANIAEVDPMHAKRVRRIHKALDSD---DVELLKLLLDES-NVT----------- 299 (599)
Q Consensus 238 ~al~~~~~~eI~elL~~~~~~~G---a~in~~d~~d~~g~tpLh~A~~~g---~~e~v~~LL~~g-~vn----------- 299 (599)
.++..+. .+++++|+ .+| ++++.. +..|.||||+|+..+ +.+++++|+++| +++
T Consensus 205 ~A~~~g~-~~~v~~Ll----~~~~~~~~~~~~---d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d 276 (373)
T 2fo1_E 205 QAAANRD-FGMMVYML----NSTKLKGDIEEL---DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276 (373)
T ss_dssp HHHHTTC-HHHHHHHT----TSHHHHHTTSCC---CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred HHHHCCC-HHHHHHHH----hcCccccChhhc---CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccc
Confidence 9998888 67777773 344 677776 899999999999998 899999999999 554
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 007550 300 LDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRM 379 (599)
Q Consensus 300 ~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~ 379 (599)
..|.||||+|+..|+.+++++||..+++++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 277 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~ 356 (373)
T 2fo1_E 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 356 (373)
T ss_dssp CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred ccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHc
Confidence 37999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhcCCC
Q 007550 380 TRRKDYIEATKQGQE 394 (599)
Q Consensus 380 g~~~~i~~l~~~G~~ 394 (599)
|+.+++++|++.|.+
T Consensus 357 g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 357 NHHNIVDIFDRCRPE 371 (373)
T ss_dssp TCHHHHHHHHTTC--
T ss_pred CCHHHHHHHHhcCcc
Confidence 999999999998864
No 19
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=1.5e-28 Score=231.44 Aligned_cols=152 Identities=28% Similarity=0.315 Sum_probs=136.0
Q ss_pred hhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHH
Q 007550 235 CLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAA 310 (599)
Q Consensus 235 ~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa 310 (599)
+|..|+..+. .++++.| +++|+++|.. |..|+||||+|+..++.+++++|++.| ++ |.+|+||||+|+
T Consensus 7 ~L~~Aa~~G~-~~~v~~L----l~~Gadvn~~---d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 7 RLIEAAENGN-KDRVKDL----IENGADVNAS---DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHHHHHTTC-HHHHHHH----HHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCC-HHHHHHH----HHCCCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHH
Confidence 3555555566 5666666 4579999988 899999999999999999999999999 55 478999999999
Q ss_pred HcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHh
Q 007550 311 AYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATK 390 (599)
Q Consensus 311 ~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~ 390 (599)
..|+.+++++||+.| +++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|++
T Consensus 79 ~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 79 ENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 007550 391 QGQET 395 (599)
Q Consensus 391 ~G~~~ 395 (599)
.|++.
T Consensus 158 ~GA~i 162 (169)
T 4gpm_A 158 QGGWL 162 (169)
T ss_dssp C----
T ss_pred CCCCc
Confidence 99854
No 20
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=246.40 Aligned_cols=188 Identities=16% Similarity=0.092 Sum_probs=172.1
Q ss_pred CcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHH
Q 007550 202 DVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRI 277 (599)
Q Consensus 202 n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpL 277 (599)
++.||||+|+..+. +.|++.+++++..+..+.|++|.++..+. .+++++| +++|++++.. |..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~L----l~~g~~~~~~---~~~g~t~L 73 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH-LSCVKIL----LKHGAQVNGV---TADWHTPL 73 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC-HHHHHHH----HHTTCCTTCC---CTTSCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHH----HHCCCCCCCC---CCCCCCHH
Confidence 35799999999997 67888999999999999999999998888 6777777 4568899887 89999999
Q ss_pred HHHHhcCCHHHHHHHHhCC-CC--CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHH
Q 007550 278 HKALDSDDVELLKLLLDES-NV--TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVT 354 (599)
Q Consensus 278 h~A~~~g~~e~v~~LL~~g-~v--n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~ 354 (599)
|+|+..|+.+++++|+++| ++ +.+|.||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 152 (261)
T 2xai_A 74 FNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKK 152 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHhCCHHHHHH
Confidence 9999999999999999999 44 477999999999999999999999998 9999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccccc
Q 007550 355 LLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 355 LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~ 399 (599)
|+++|++++. +..|+||||+|+..|+.++++.|++.|++++...
T Consensus 153 Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d 196 (261)
T 2xai_A 153 LLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196 (261)
T ss_dssp HHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 9999999995 8999999999999999999999999999876543
No 21
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.96 E-value=8.9e-29 Score=241.40 Aligned_cols=205 Identities=16% Similarity=0.098 Sum_probs=179.3
Q ss_pred HHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccHHHHHHHHhhhc
Q 007550 181 KELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSD 256 (599)
Q Consensus 181 ~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~ 256 (599)
.++++++++.+.+.+... ..++.||||+|+.++. +.|++.++++...+..+.++++.++..+. .+++++|.+
T Consensus 4 ~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~-- 79 (223)
T 2f8y_A 4 PAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA-QGVFQILIR-- 79 (223)
T ss_dssp -CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHHH--
T ss_pred HHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHH--
Confidence 344556666777665431 3567899999999997 67888999999999999999999988888 677777743
Q ss_pred ccccc-cccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccC
Q 007550 257 EECEA-NIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNL 331 (599)
Q Consensus 257 ~~~Ga-~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~ 331 (599)
+|+ +++.. +..|.||||+|+..|+.+++++|+++| ++ +..|+||||+|+..|+.+++++|+..| +++|.
T Consensus 80 --~~~~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~ 153 (223)
T 2f8y_A 80 --NRATDLDAR---MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDM 153 (223)
T ss_dssp --BTTSCTTCC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred --cCCCCcccC---CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCC
Confidence 344 56655 889999999999999999999999999 54 478999999999999999999999997 99999
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCc
Q 007550 332 KNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQET 395 (599)
Q Consensus 332 ~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~ 395 (599)
+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|.+.|...
T Consensus 154 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 154 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999753
No 22
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=247.51 Aligned_cols=191 Identities=18% Similarity=0.070 Sum_probs=147.3
Q ss_pred CCcHHHHHHHHhcCh----HHHHhcccc--------ccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCC
Q 007550 201 EDVIPILVAAFHCQL----NQLRSHCVQ--------RVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDP 268 (599)
Q Consensus 201 ~n~~t~L~~A~~~~~----~~Ll~~~~~--------~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~ 268 (599)
....++|+.|+..|. +.|++.+.+ +...+..+.++++.+........++++| +.+|+++|..
T Consensus 9 ~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~L----l~~Gadvn~~-- 82 (269)
T 4b93_B 9 YREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKV----PASGLGVNVT-- 82 (269)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------CCCCTTCC--
T ss_pred ccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHH----HHCCCCCCCc--
Confidence 345799999999997 466666654 2334456678888777666655666666 5679999988
Q ss_pred CCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHH
Q 007550 269 MHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAA 344 (599)
Q Consensus 269 ~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~ 344 (599)
|.+|+||||+|+..|+.++|++|++.| ++ +.+|.||||+|+..++.++++.||..| +++|.+|..|+||||+|+
T Consensus 83 -d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 83 -SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYAC 160 (269)
T ss_dssp -CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCHHHHHH
T ss_pred -CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCC-CCCCCCCCCCCCHHHHHH
Confidence 899999999999999999999999999 54 478999999999999999999999998 999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccccc
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~ 399 (599)
..|+.+++++||++|+++|.++..|+||||+|+..|+.+++++|++.|++++...
T Consensus 161 ~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 161 SGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999876543
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=8.8e-28 Score=236.55 Aligned_cols=190 Identities=17% Similarity=0.131 Sum_probs=175.1
Q ss_pred cCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCc
Q 007550 200 VEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVR 275 (599)
Q Consensus 200 ~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~t 275 (599)
..++.||||+|+..+. +.|++.++++...+..+.++++.++..+. .+++++| +++|++++.. +..|.|
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~L----l~~g~~~~~~---~~~g~t 79 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH-LEAVKYL----IKAGALVDPK---DAEGST 79 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHH----HTTTCCCCCC---CTTSCC
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCC-HHHHHHH----HhCCCCCCCC---CCCCCc
Confidence 5677899999999997 67889999999999999999999998888 6777777 4568888877 889999
Q ss_pred HHHHHHhcCCHHHHHHHHhCC--CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHH
Q 007550 276 RIHKALDSDDVELLKLLLDES--NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPA 350 (599)
Q Consensus 276 pLh~A~~~g~~e~v~~LL~~g--~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~ 350 (599)
|||+|+..|+.+++++|++.| ++ +..|.||||+|+..|+.+++++|+..| ++++.++..|.||||+|+..|+.+
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~ 158 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVD 158 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHCCCHH
Confidence 999999999999999999998 33 478999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccc
Q 007550 351 VLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 351 iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~ 398 (599)
++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|.++...
T Consensus 159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~ 206 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999999999999977643
No 24
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=248.26 Aligned_cols=210 Identities=17% Similarity=0.080 Sum_probs=188.0
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVS 245 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~ 245 (599)
.+|+.|+..+..++++++++.+.+++.+ ..++.||||+|+..+. +.|++.++++..++..+.++++.++..+.
T Consensus 61 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~- 137 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS- 137 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC-
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCH-
Confidence 5799999999999999999999988776 5667999999999997 68889999999999999999999998888
Q ss_pred HHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHH
Q 007550 246 GEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEV 321 (599)
Q Consensus 246 ~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~L 321 (599)
.+++++| +.+|++++.. ..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|
T Consensus 138 ~~~v~~L----l~~g~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 209 (285)
T 3d9h_A 138 WDCVNLL----LQHGASVQPE----SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209 (285)
T ss_dssp HHHHHHH----HHTTCCSSCS----CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH----HHCCCCCCCC----CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 6777777 4567787653 45999999999999999999999999 55 47899999999999999999999
Q ss_pred HHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhc-CCC
Q 007550 322 LNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQ-GQE 394 (599)
Q Consensus 322 L~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~-G~~ 394 (599)
|..| +++|. +..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ ++..++++|++. |++
T Consensus 210 l~~g-a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~ 279 (285)
T 3d9h_A 210 LESG-ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGAS 279 (285)
T ss_dssp HHTT-CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred HHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence 9997 99995 889999999999999999999999999999999999999999999 567899999988 543
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.95 E-value=1.2e-27 Score=235.68 Aligned_cols=190 Identities=18% Similarity=0.152 Sum_probs=171.5
Q ss_pred cCCcHHHHHHHHhcCh----HHHHh----ccccccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCc
Q 007550 200 VEDVIPILVAAFHCQL----NQLRS----HCVQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHA 271 (599)
Q Consensus 200 ~~n~~t~L~~A~~~~~----~~Ll~----~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~ 271 (599)
..++.|+||+|+.++. +.|++ .+.++...+..+.++++.++..+. .+++++| +++|++++.. +.
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~L----l~~g~~~~~~---~~ 77 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL-PSVVRLL----VTAGASPMAL---DR 77 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC-HHHHHHH----HHTTCCTTCC---CT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCC-HHHHHHH----HHcCCCcccc---CC
Confidence 4677899999999997 34554 677888888999999999998888 6777777 4568898887 88
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhCC-----CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcC-CCCChHHHH
Q 007550 272 KRVRRIHKALDSDDVELLKLLLDES-----NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKN-ARGHTVLHV 342 (599)
Q Consensus 272 ~g~tpLh~A~~~g~~e~v~~LL~~g-----~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d-~~G~TpLh~ 342 (599)
.|.||||+|+..|+.+++++|++.| ++ +..|.||||+|+..|+.+++++|+..| ++++..+ ..|+||||+
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHH
Confidence 9999999999999999999999987 22 468999999999999999999999998 9999999 789999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccc
Q 007550 343 AARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 343 A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~ 398 (599)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|.+++..
T Consensus 157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999987643
No 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=9.1e-28 Score=234.81 Aligned_cols=201 Identities=15% Similarity=0.060 Sum_probs=158.2
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhcc--ccccc-cCccchhhhhhccCc
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHC--VQRVV-RSNLDDVCLEKELPD 242 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~--~~~i~-~~~~~~t~L~~al~~ 242 (599)
.+|+.|+..+..++++++++.+.+.+.. ...++.||||+|+.++. +.|++.+ .++.. .+..+.++++.++..
T Consensus 4 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~ 82 (228)
T 2dzn_A 4 YPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV 82 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred cHHHHHHHhCCHHHHHHHHhcCcccccc-CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence 3688999999999999998888776542 15667899999999886 5677777 55555 667788888888777
Q ss_pred ccHHHHHHHHhhhccccc--ccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHH
Q 007550 243 EVSGEIKSLRVKSDEECE--ANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPK 316 (599)
Q Consensus 243 ~~~~eI~elL~~~~~~~G--a~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~ 316 (599)
+. .+++++| +++| ++++.. +..|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+
T Consensus 83 ~~-~~~~~~L----l~~g~~~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 154 (228)
T 2dzn_A 83 GN-LEVVKSL----YDRPLKPDLNKI---TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154 (228)
T ss_dssp CC-HHHHHHH----HSSSSCCCTTCC---CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred CC-HHHHHHH----HhCCCCcccccC---CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence 77 5666666 3445 566655 778888888888888888888888888 44 467888888888888888
Q ss_pred HHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHc
Q 007550 317 VFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLL-SKGACASETTSDGQTAVAICRRM 379 (599)
Q Consensus 317 ~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL-~~Gad~~~~d~~G~TpL~~A~~~ 379 (599)
++++|+..|.+++|.+|..|+||||+|+..|+.+++++|+ ++|++++.+|.+|+||||+|+..
T Consensus 155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 8888888877888888888888888888888888888888 78888888888888888888653
No 27
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.95 E-value=1.3e-27 Score=234.71 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=154.9
Q ss_pred HHHHHHHHhcCh----HHHHhc-cccccccCccchhhhhhccCcccHHHHHHHHhhhccccccccccc--CCCCccCCcH
Q 007550 204 IPILVAAFHCQL----NQLRSH-CVQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEV--DPMHAKRVRR 276 (599)
Q Consensus 204 ~t~L~~A~~~~~----~~Ll~~-~~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~--d~~d~~g~tp 276 (599)
.||||+|+..+. +.|++. ++++..++..+.+++|.++..+. .+++++|+ ++|+++... +..|..|.||
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll----~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDN-LEAAMVLM----EAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTC-HHHHHHHH----HHCGGGGGCCCCSTTTTTCCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-HHHHHHHH----HcCchhccccccccCCCCcCH
Confidence 567777777775 345554 66666677777777777776666 56666663 346665221 2337899999
Q ss_pred HHHHHhcCCHHHHHHHHhCC-CCCC----------------CCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChH
Q 007550 277 IHKALDSDDVELLKLLLDES-NVTL----------------DDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTV 339 (599)
Q Consensus 277 Lh~A~~~g~~e~v~~LL~~g-~vn~----------------~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~Tp 339 (599)
||+|+..|+.+++++|+++| +++. .|.||||+|+..|+.+++++||..| +++|.+|..|+||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCH
Confidence 99999999999999999999 5542 6999999999999999999999997 9999999999999
Q ss_pred HHHHHHcCCHHHH----HHHHhCCCCC------CCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCc
Q 007550 340 LHVAARRKEPAVL----VTLLSKGACA------SETTSDGQTAVAICRRMTRRKDYIEATKQGQET 395 (599)
Q Consensus 340 Lh~A~~~~~~~iv----~~LL~~Gad~------~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~ 395 (599)
||+|+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.++++.|+++|..+
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 9999999999988 9999999998 589999999999999999999999999998644
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.95 E-value=4.1e-27 Score=230.83 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=167.1
Q ss_pred cHHHHHHHHhcCh----HHHHhcc-ccccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHH
Q 007550 203 VIPILVAAFHCQL----NQLRSHC-VQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRI 277 (599)
Q Consensus 203 ~~t~L~~A~~~~~----~~Ll~~~-~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpL 277 (599)
..++|+.|+..|. +.|++.. ......+..+.++++.++..+. .+++++| +++|++++.. +..|+|||
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~L----l~~g~~~~~~---~~~g~t~L 77 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-TEIVEFL----LQLGVPVNDK---DDAGWSPL 77 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-HHHHHHH----HHTTCCSCCC---CTTSCCHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-HHHHHHH----HHhCCCCCCc---CCCCCCHH
Confidence 4588999999997 3444444 3355667889999999998888 6777777 4568888877 88999999
Q ss_pred HHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHH
Q 007550 278 HKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLV 353 (599)
Q Consensus 278 h~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~ 353 (599)
|+|+..|+.+++++|+++| ++ +..|.||||+|+..|+.+++++|+..| ++++.++..|+||||+|+..|+.++++
T Consensus 78 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 9999999999999999999 54 578999999999999999999999998 999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccc
Q 007550 354 TLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 354 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~ 398 (599)
+|+++|++++.+|..|+||||+|+..|+.++++.|++.|.+++..
T Consensus 157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 201 (231)
T 3aji_A 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
Confidence 999999999999999999999999999999999999999987653
No 29
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.95 E-value=3.2e-28 Score=257.84 Aligned_cols=242 Identities=13% Similarity=0.110 Sum_probs=199.2
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HH--------HHhccccccccCccchhhhh
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQ--------LRSHCVQRVVRSNLDDVCLE 237 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~--------Ll~~~~~~i~~~~~~~t~L~ 237 (599)
.+|+.|+..+. ++++++.....+..+ ...+.|+||+|+..+. +. |++.+++++.++..+.|++|
T Consensus 96 t~L~~Aa~~~~-~~~~~L~~~~~n~~d---~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~ 171 (373)
T 2fo1_E 96 IKLHTEAAGSY-AITEPITRESVNIID---PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 171 (373)
T ss_dssp CHHHHHHHSSS-CCCSCCSTTTTTTCC---CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred cHHHHHhcCCc-hHHHHhccccccccC---CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHH
Confidence 46888888665 555555443333222 3568899999999886 23 34889999999999999999
Q ss_pred hccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC----CC---CCCCchHHHHHH
Q 007550 238 KELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES----NV---TLDDAYALHYAA 310 (599)
Q Consensus 238 ~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g----~v---n~~g~tpLh~Aa 310 (599)
.++..+. .+++++| +++|++++.. +..|.||||+|+..|+.+++++|+++| ++ |..|.||||+|+
T Consensus 172 ~A~~~g~-~~iv~~L----l~~ga~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 172 LAVLARR-RRLVAYL----MKAGADPTIY---NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243 (373)
T ss_dssp HHHHHTC-HHHHHHH----HHTTCCSCCC---CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred HHHHcCh-HHHHHHH----HHCCCCCccc---CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence 9999888 7788888 4579999887 889999999999999999999999986 33 578999999999
Q ss_pred HcC---CHHHHHHHHHcCCCCccC--------cCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHH
Q 007550 311 AYC---NPKVFKEVLNMGLADLNL--------KNARGHTVLHVAARRKEPAVLVTLLSKG-ACASETTSDGQTAVAICRR 378 (599)
Q Consensus 311 ~~g---~~~~v~~LL~~g~advn~--------~d~~G~TpLh~A~~~~~~~iv~~LL~~G-ad~~~~d~~G~TpL~~A~~ 378 (599)
..+ +.+++++|+..| ++++. .|..|+||||+|+..|+.+++++|+++| ++++.+|.+|+||||+|+.
T Consensus 244 ~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~ 322 (373)
T 2fo1_E 244 HNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322 (373)
T ss_dssp HSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred HhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH
Confidence 998 899999999998 99986 6779999999999999999999999875 9999999999999999999
Q ss_pred cCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcchhHHHHHhhhh
Q 007550 379 MTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMADDFQMKLNYLEN 438 (599)
Q Consensus 379 ~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~~~~~~l~~le~ 438 (599)
.|+.+++++|++.|++++... ..|.+++.++...+...+..+++++
T Consensus 323 ~g~~~iv~~Ll~~gad~~~~d--------------~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 323 EGRIEVVMYLIQQGASVEAVD--------------ATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp HTCHHHHHHHHHTTCCSSCCC--------------SSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCHHHHHHHHHcCCCccCCC--------------CCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 999999999999999876543 3455566666655555544444443
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=232.04 Aligned_cols=215 Identities=14% Similarity=0.092 Sum_probs=189.3
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccC-ccchhhhhhccCccc
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRS-NLDDVCLEKELPDEV 244 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~-~~~~t~L~~al~~~~ 244 (599)
..|+.|+.++..++++++++.+.+++.+ ..++.++||+|+..+. +.|++.+.+..... ..+.++++.++..+.
T Consensus 11 ~~l~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 11 WDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp CCHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred hHHHHHHHcCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 3588999999999999999999988775 4667899999999997 67788888777554 448899999988888
Q ss_pred HHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCC-HHHHH
Q 007550 245 SGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCN-PKVFK 319 (599)
Q Consensus 245 ~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~-~~~v~ 319 (599)
.+++++| +++|++++.. +..|.||||+|+..|+.+++++|+++| ++ +..|.||||+|+..++ .++++
T Consensus 89 -~~~v~~L----l~~g~~~~~~---~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 89 -LSMVVQL----MKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp -HHHHHHH----HHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred -HHHHHHH----HHcCCCCccc---CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence 6777777 4568888887 889999999999999999999999999 54 5789999999997776 78888
Q ss_pred HHHHcCCCCccCcCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCc
Q 007550 320 EVLNMGLADLNLKNA-RGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQET 395 (599)
Q Consensus 320 ~LL~~g~advn~~d~-~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~ 395 (599)
+|+..+ ++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.+.+.|...
T Consensus 161 ~L~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 161 LLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHTT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHhcC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 888887 99999997 9999999999999999999999999999999999999999999999999999999998754
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=7.2e-27 Score=228.39 Aligned_cols=190 Identities=18% Similarity=0.094 Sum_probs=167.5
Q ss_pred HHHHHHHHhcCh----HHHHhccccccc-cCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHH
Q 007550 204 IPILVAAFHCQL----NQLRSHCVQRVV-RSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIH 278 (599)
Q Consensus 204 ~t~L~~A~~~~~----~~Ll~~~~~~i~-~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh 278 (599)
.||||+|+..+. +.|++.+.+... .+..+.+++|.++..+. .+++++| +.+|++++.....+..|.||||
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~L----l~~~~~~~~~~~~~~~g~t~L~ 77 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA-HEITSFL----LSKMENVNLDDYPDDSGWTPFH 77 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTC-HHHHHHH----HHTCTTCCGGGCCCTTSCCHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCC-HHHHHHH----HhccccccccccCCCCCCCHHH
Confidence 589999999997 567777776655 77889999999998888 6777777 3457455444324899999999
Q ss_pred HHHhcCCHHHHHHHHhCC---CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHH
Q 007550 279 KALDSDDVELLKLLLDES---NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVL 352 (599)
Q Consensus 279 ~A~~~g~~e~v~~LL~~g---~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv 352 (599)
+|+..|+.+++++|+++| ++ +..|.||||+|+..|+.+++++|+..| ++++.+|..|+||||+|+..|+.+++
T Consensus 78 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v 156 (228)
T 2dzn_A 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLI 156 (228)
T ss_dssp HHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHH
Confidence 999999999999999997 33 468999999999999999999999997 99999999999999999999999999
Q ss_pred HHHHhCC-CCCCCCCCCCCcHHHHHHHcCChhHHHHHH-hcCCCccccc
Q 007550 353 VTLLSKG-ACASETTSDGQTAVAICRRMTRRKDYIEAT-KQGQETNKDR 399 (599)
Q Consensus 353 ~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~~i~~l~-~~G~~~~~~~ 399 (599)
++|+++| ++++.+|..|+||||+|+..|+.++++.|+ +.|+++....
T Consensus 157 ~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~ 205 (228)
T 2dzn_A 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205 (228)
T ss_dssp HHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred HHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence 9999999 999999999999999999999999999999 8899876543
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.95 E-value=1.5e-27 Score=243.17 Aligned_cols=207 Identities=10% Similarity=0.003 Sum_probs=180.3
Q ss_pred HcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccHHHHHHHH
Q 007550 177 AFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLR 252 (599)
Q Consensus 177 ~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL 252 (599)
.+...++.+++.+...+ .+ ..++.||||+|+..+. +.|++.+++++..+ +.+++|.++..+. .+++++|
T Consensus 9 ~~~~~~v~~lL~~~~~~--~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~-~~~v~~L 81 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTF--KA--DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLED-TKIVKIL 81 (285)
T ss_dssp GCCHHHHHHHHHSTTTT--CC--CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSS-CHHHHHH
T ss_pred hcCHHHHHHHHHhCCCC--cc--CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCC-HHHHHHH
Confidence 45667788888776543 33 4677999999999997 68889999988874 8999999999888 6777777
Q ss_pred hhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCC-chHHHHHHHcCCHHHHHHHHHcCCC
Q 007550 253 VKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDD-AYALHYAAAYCNPKVFKEVLNMGLA 327 (599)
Q Consensus 253 ~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g-~tpLh~Aa~~g~~~~v~~LL~~g~a 327 (599)
+++|++++.. +..|+||||+|+..|+.+++++|+++| ++ +..| .||||+|+..|+.+++++|+..| +
T Consensus 82 ----l~~ga~~~~~---d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g-~ 153 (285)
T 3kea_A 82 ----LFSGLDDSQF---DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-P 153 (285)
T ss_dssp ----HHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS-C
T ss_pred ----HHCCCCCCCc---CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC-C
Confidence 4569999887 889999999999999999999999999 54 4677 79999999999999999999998 7
Q ss_pred CccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCChhHHHHHHhcCCCccccc
Q 007550 328 DLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTA-VAICRRMTRRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 328 dvn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~Tp-L~~A~~~g~~~~i~~l~~~G~~~~~~~ 399 (599)
++... ..|+||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|++.|++++...
T Consensus 154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 154 STFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225 (285)
T ss_dssp TTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred ccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 66322 289999999999999999999999999999999999998 999999999999999999999887543
No 33
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.95 E-value=9.2e-27 Score=242.36 Aligned_cols=220 Identities=20% Similarity=0.174 Sum_probs=191.0
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVS 245 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~ 245 (599)
.+|++|+..+..++++++++++++.+.+ ..++.++++.+...+. ..+...+.++...+..+.|+++.++..+.
T Consensus 61 TpLh~A~~~g~~~iv~~Ll~~ga~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~- 137 (337)
T 4g8k_A 61 TPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK- 137 (337)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCchhhh--ccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc-
Confidence 4799999999999999999999998876 4666889999988886 56778889999999999999999988888
Q ss_pred HHHHHHHhhhcccccccccccCC-------CCccCCcHHHHHHhcCCHHHHHHHHhC-C-CC---CCCCchHHHHHHHcC
Q 007550 246 GEIKSLRVKSDEECEANIAEVDP-------MHAKRVRRIHKALDSDDVELLKLLLDE-S-NV---TLDDAYALHYAAAYC 313 (599)
Q Consensus 246 ~eI~elL~~~~~~~Ga~in~~d~-------~d~~g~tpLh~A~~~g~~e~v~~LL~~-g-~v---n~~g~tpLh~Aa~~g 313 (599)
.++++++ +.+|++++..+. .+..|.||||+|+..|+.++|++||++ | ++ |..|.||||+++..+
T Consensus 138 ~~~~~~l----l~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~ 213 (337)
T 4g8k_A 138 VKALKFL----YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 213 (337)
T ss_dssp HHHHHHH----HHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS
T ss_pred HHHHHHH----HHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc
Confidence 6667766 456888776532 356799999999999999999999964 6 55 478999999988755
Q ss_pred C----HHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCChhHHHHH
Q 007550 314 N----PKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLS-KGACASETTSDGQTAVAICRRMTRRKDYIEA 388 (599)
Q Consensus 314 ~----~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l 388 (599)
. ..++++|+.+| +++|.+|..|+||||+|+..|+.++++.|+. .|++++.+|.+|+||||+|++.|+.+++++|
T Consensus 214 ~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L 292 (337)
T 4g8k_A 214 DDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 292 (337)
T ss_dssp CTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 4 35777888887 9999999999999999999999999999998 5899999999999999999999999999999
Q ss_pred HhcCCCccc
Q 007550 389 TKQGQETNK 397 (599)
Q Consensus 389 ~~~G~~~~~ 397 (599)
++.|++++.
T Consensus 293 l~~GAd~n~ 301 (337)
T 4g8k_A 293 CKRGASTDC 301 (337)
T ss_dssp HTTSCSSTT
T ss_pred HHCCCCCCC
Confidence 999997753
No 34
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.95 E-value=3.2e-28 Score=240.19 Aligned_cols=188 Identities=17% Similarity=0.152 Sum_probs=167.1
Q ss_pred cCCcHHHHHHHHhcCh----HHHHhccc----cccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCc
Q 007550 200 VEDVIPILVAAFHCQL----NQLRSHCV----QRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHA 271 (599)
Q Consensus 200 ~~n~~t~L~~A~~~~~----~~Ll~~~~----~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~ 271 (599)
..++.||||+|+.++. +.|++.+. +++..+..+.+++|.++..+. .+++++| +.+|++++.. +.
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~L----l~~g~~~~~~---~~ 76 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ-PEIAEAL----LGAGCDPELR---DF 76 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTC-HHHHHCC----CSCCCCSCCC---CT
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCC-HHHHHHH----HHcCCCCCCc---CC
Confidence 4667899999999997 34444443 577788889999999998888 6777777 6679999887 88
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhCC-C---------CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCC-CCChHH
Q 007550 272 KRVRRIHKALDSDDVELLKLLLDES-N---------VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNA-RGHTVL 340 (599)
Q Consensus 272 ~g~tpLh~A~~~g~~e~v~~LL~~g-~---------vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~-~G~TpL 340 (599)
.|.||||+|+..|+.+++++|++.| + .+..|+||||+|+..|+.+++++||..| +++|.++. .|+|||
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL 155 (236)
T 1ikn_D 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTAL 155 (236)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCHH
Confidence 9999999999999999999999998 2 2467999999999999999999999998 99999998 999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcc
Q 007550 341 HVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETN 396 (599)
Q Consensus 341 h~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~ 396 (599)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.|+++.
T Consensus 156 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 99999999999999999999999999999999999999999999999999999765
No 35
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=4.2e-27 Score=225.68 Aligned_cols=182 Identities=18% Similarity=0.106 Sum_probs=159.5
Q ss_pred cHHHHHHHHhcCh----HHHHhccc-cccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHH
Q 007550 203 VIPILVAAFHCQL----NQLRSHCV-QRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRI 277 (599)
Q Consensus 203 ~~t~L~~A~~~~~----~~Ll~~~~-~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpL 277 (599)
..++|+.|+..+. ..|+..+. +++..+..+.++++.++..+. .+++++| +++|++++.. +..|.|||
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~L----l~~g~~~~~~---~~~g~t~l 76 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-IEIAKAL----IDRGADINLQ---NSISDSPY 76 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHH----HHTTCCTTCC---CTTSCCHH
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHH----HHcCCCCCCC---CCCCCCHH
Confidence 4678888888776 34444443 777777778888888877777 6777777 4568999887 88999999
Q ss_pred HHHHhcCCHHHHHHHHhCC--CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCC----
Q 007550 278 HKALDSDDVELLKLLLDES--NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKE---- 348 (599)
Q Consensus 278 h~A~~~g~~e~v~~LL~~g--~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~---- 348 (599)
|+|+..|+.+++++|++.+ ++ +..|.||||+|+..|+.+++++||..|++++|.+|..|+||||+|+..++
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence 9999999999999999554 43 47899999999999999999999999889999999999999999999998
Q ss_pred -HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcC
Q 007550 349 -PAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQG 392 (599)
Q Consensus 349 -~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G 392 (599)
.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999887
No 36
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=9e-28 Score=239.92 Aligned_cols=125 Identities=20% Similarity=0.261 Sum_probs=117.3
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CCC---CC-------------CchHHHHHHHcCCHHHHHHHHH---cCCCCc
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NVT---LD-------------DAYALHYAAAYCNPKVFKEVLN---MGLADL 329 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn---~~-------------g~tpLh~Aa~~g~~~~v~~LL~---~g~adv 329 (599)
|..|.||||+|+..|+.++|++|+++| +++ .. |.||||+|+..|+.+++++||. .| +++
T Consensus 87 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~ 165 (256)
T 2etb_A 87 FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASL 165 (256)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCT
T ss_pred cccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCc
Confidence 678999999999999999999999999 654 32 9999999999999999999999 66 999
Q ss_pred cCcCCCCChHHHHHHH--cCCHH-------HHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 330 NLKNARGHTVLHVAAR--RKEPA-------VLVTLLSKGACA-------SETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 330 n~~d~~G~TpLh~A~~--~~~~~-------iv~~LL~~Gad~-------~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
|.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.++++.|++.|.
T Consensus 166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 9999999999999999 78888 999999999999 9999999999999999999999999999986
Q ss_pred Cc
Q 007550 394 ET 395 (599)
Q Consensus 394 ~~ 395 (599)
.+
T Consensus 246 ~~ 247 (256)
T 2etb_A 246 SG 247 (256)
T ss_dssp HH
T ss_pred CC
Confidence 44
No 37
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.95 E-value=9.3e-27 Score=241.84 Aligned_cols=212 Identities=21% Similarity=0.135 Sum_probs=186.8
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVS 245 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~ 245 (599)
.+|++|+.++..++++++++.+++++.+ ..++.||||+|+..+. +.|+++++++...+..+.++++.++..+.
T Consensus 60 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~- 136 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR- 136 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC-
Confidence 5899999999999999999999998776 4667999999999997 68899999999999999999999998888
Q ss_pred HHHHHHHhhhcccccccccccC---------------------------------------------------CCCccCC
Q 007550 246 GEIKSLRVKSDEECEANIAEVD---------------------------------------------------PMHAKRV 274 (599)
Q Consensus 246 ~eI~elL~~~~~~~Ga~in~~d---------------------------------------------------~~d~~g~ 274 (599)
.+++++| +++|++++..+ ..+..|.
T Consensus 137 ~~~v~~L----l~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (351)
T 3utm_A 137 VEVCSLL----LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212 (351)
T ss_dssp HHHHHHH----HHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred HHHHHHH----HHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence 6777777 45677776543 1246788
Q ss_pred cHHHHHHhc---CCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcC
Q 007550 275 RRIHKALDS---DDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRK 347 (599)
Q Consensus 275 tpLh~A~~~---g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~ 347 (599)
||||+|+.. +..+++++|++.| ++ |..|+||||+|+..|+.+++++|+.+| +++|.+|..|+||||+|+..|
T Consensus 213 t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~ 291 (351)
T 3utm_A 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAG 291 (351)
T ss_dssp CHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcC
Confidence 999999999 5689999999999 55 478999999999999999999999998 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 348 EPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 348 ~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
+.+++++|+++|++++.+|..|+||+|+| +..+++.+.+.+.
T Consensus 292 ~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~ 333 (351)
T 3utm_A 292 HLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTP 333 (351)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC--
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhccc
Confidence 99999999999999999999999999998 5567777776653
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=1.2e-27 Score=244.17 Aligned_cols=206 Identities=19% Similarity=0.080 Sum_probs=181.5
Q ss_pred HHHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCccc
Q 007550 169 IELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEV 244 (599)
Q Consensus 169 ~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~ 244 (599)
..+|+.|+..|..++++++++.+.+++.. ..++.||||+|+..+. +.|++++++++..+..+.|++|.++..+.
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 46899999999999999999999998776 4667999999999997 68889999999999999999999998888
Q ss_pred HHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC--C-------------------------
Q 007550 245 SGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES--N------------------------- 297 (599)
Q Consensus 245 ~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g--~------------------------- 297 (599)
.+++++| +.+|++++.. +..|.||||+|+..++.++++.|+... +
T Consensus 119 -~~~v~~L----l~~g~~~~~~---~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (299)
T 1s70_B 119 -LDIAEYL----ISQGAHVGAV---NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI 190 (299)
T ss_dssp -HHHHHHH----HHTTCCTTCC---CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -HHHHHHH----HhCCCCCCCc---CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence 6777877 4568898887 889999999999999999998877542 1
Q ss_pred ----CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 007550 298 ----VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAV 373 (599)
Q Consensus 298 ----vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL 373 (599)
.+..|.||||+|+..|+.+++++||..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus 191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l 269 (299)
T 1s70_B 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269 (299)
T ss_dssp CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 2357999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHH
Q 007550 374 AICRRMTRRKDY 385 (599)
Q Consensus 374 ~~A~~~g~~~~i 385 (599)
|+|+......+.
T Consensus 270 ~~A~~~~~~~l~ 281 (299)
T 1s70_B 270 DVADEDILGYLE 281 (299)
T ss_dssp TSCCSGGGHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999764433333
No 39
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.94 E-value=3.6e-27 Score=248.11 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=181.7
Q ss_pred cCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCc
Q 007550 200 VEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVR 275 (599)
Q Consensus 200 ~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~t 275 (599)
..++.|+||+|+..+. +.|++.+++++..+..+.++++.++..+. .+++++| +++|++++ +..|.|
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~-~~~v~~L----l~~g~~~~-----~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC-VDTAKYL----ASVGEVHS-----LWHGQK 86 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCC-HHHHHHH----HHHCCCCC-----CBTTBC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC-HHHHHHH----HHCCCCcc-----ccCCCC
Confidence 4567999999999997 68889999999999999999999999888 7888888 44566443 457999
Q ss_pred HHHHHHhcCCHHHHHHHHhC----C-C--------------------CCCCCchHHHHHHHcC--CHHHHHHHHHcCCCC
Q 007550 276 RIHKALDSDDVELLKLLLDE----S-N--------------------VTLDDAYALHYAAAYC--NPKVFKEVLNMGLAD 328 (599)
Q Consensus 276 pLh~A~~~g~~e~v~~LL~~----g-~--------------------vn~~g~tpLh~Aa~~g--~~~~v~~LL~~g~ad 328 (599)
|||+|+..|+.++|++|++. | + .+..|.||||+|+..| +.+++++||..| ++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~ 165 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-AS 165 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CC
Confidence 99999999999999999998 5 2 3357999999999999 999999999997 99
Q ss_pred ccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccccccHH
Q 007550 329 LNLKNARGHTVLHVAARRKEPAVLVTLLSKGAC-----ASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDRLCID 403 (599)
Q Consensus 329 vn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad-----~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~~~ 403 (599)
+|.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++.|++++...
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d---- 241 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED---- 241 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC----
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC----
Confidence 999999999999999999999999999999999 99999999999999999999999999999999876533
Q ss_pred HHHHHHhccCCCCCccchhhhhcchhHHHHH
Q 007550 404 VLEREMRRNSMSGNLALSSEVMADDFQMKLN 434 (599)
Q Consensus 404 ile~~~~~~p~~~~~~~~~~~~~~~~~~~l~ 434 (599)
..|.+++.++...+...+..+
T Consensus 242 ----------~~g~tpL~~A~~~g~~~~v~~ 262 (364)
T 3ljn_A 242 ----------NEHTVPLYLSVRAAMVLLTKE 262 (364)
T ss_dssp ----------TTSCCHHHHHHHTCCHHHHHH
T ss_pred ----------CCCCCHHHHHHHhChHHHHHH
Confidence 345556666655554443333
No 40
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.94 E-value=1.5e-27 Score=243.20 Aligned_cols=207 Identities=12% Similarity=-0.045 Sum_probs=188.3
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVS 245 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~ 245 (599)
.+|++|+..+..++++++++.+++++.+ ++.||||+|+..+. +.|+++++++..++..+.+++|.++..+.
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~- 107 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN- 107 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCC-
Confidence 5799999999999999999999998773 47899999999997 78999999999999999999999998888
Q ss_pred HHHHHHHhhhcccccccccccCCCCccC-CcHHHHHHhcCCHHHHHHHHhCC-CC-CC-CCchHHHHHHHcCCHHHHHHH
Q 007550 246 GEIKSLRVKSDEECEANIAEVDPMHAKR-VRRIHKALDSDDVELLKLLLDES-NV-TL-DDAYALHYAAAYCNPKVFKEV 321 (599)
Q Consensus 246 ~eI~elL~~~~~~~Ga~in~~d~~d~~g-~tpLh~A~~~g~~e~v~~LL~~g-~v-n~-~g~tpLh~Aa~~g~~~~v~~L 321 (599)
.+++++| +++|++++.. +..| .||||+|+..|+.+++++|+++| ++ +. .|.||||+|+..|+.+++++|
T Consensus 108 ~~~v~~L----l~~ga~~~~~---~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 108 MQTVKLF----VKKNWRLMFY---GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHHHHH----HHHCGGGGGC---SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH----HhcCCCCCcc---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 7788887 4568999988 7888 79999999999999999999999 43 33 899999999999999999999
Q ss_pred HHcCCCCccCcCCCCChH-HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcc
Q 007550 322 LNMGLADLNLKNARGHTV-LHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETN 396 (599)
Q Consensus 322 L~~g~advn~~d~~G~Tp-Lh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~ 396 (599)
|.+| +++|.+|..|+|| ||+|+..|+.+++++|+++|++++.+|. .|+..|+.+++++|++.|.++.
T Consensus 181 l~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 181 LDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp HHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHT
T ss_pred HHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCC
Confidence 9997 9999999999998 9999999999999999999999999883 5677899999999999986543
No 41
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.94 E-value=1.1e-26 Score=236.82 Aligned_cols=217 Identities=15% Similarity=0.077 Sum_probs=180.9
Q ss_pred HHHHcChHHHHHHHHHhchhh------hhhcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcc
Q 007550 174 ASAAFQMKELVLLFQRRLLNF------VEKALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDE 243 (599)
Q Consensus 174 ~A~~~~i~~L~~~~~~~l~~~------~~k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~ 243 (599)
.|.......+..++.+...-. .......++.++|+.|+..|. +.|++.+++++..+..+.+++|.++..+
T Consensus 5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 84 (299)
T 1s70_B 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD 84 (299)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 444555556666665432100 000112346799999999997 6788999999999999999999999888
Q ss_pred cHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHH
Q 007550 244 VSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFK 319 (599)
Q Consensus 244 ~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~ 319 (599)
. .+++++| +++|++++.. |..|.||||+|+..|+.++|++|+++| ++ |..|.||||+|+..++.+++.
T Consensus 85 ~-~~~v~~L----l~~ga~~~~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 156 (299)
T 1s70_B 85 N-VDMVKFL----VENGANINQP---DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156 (299)
T ss_dssp C-HHHHHHH----HHTTCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHH
T ss_pred C-HHHHHHH----HHCCCCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHH
Confidence 8 7788887 4578999887 889999999999999999999999999 54 578999999999999999998
Q ss_pred HHHHcCCCCccC--------------------------cCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 007550 320 EVLNMGLADLNL--------------------------KNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAV 373 (599)
Q Consensus 320 ~LL~~g~advn~--------------------------~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL 373 (599)
.++...+++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus 157 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL 236 (299)
T 1s70_B 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236 (299)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHH
T ss_pred HHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 888765566543 567899999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHhcCCCcccc
Q 007550 374 AICRRMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 374 ~~A~~~g~~~~i~~l~~~G~~~~~~ 398 (599)
|+|+..|+.++++.|++.|+++...
T Consensus 237 ~~A~~~~~~~~v~~Ll~~gad~~~~ 261 (299)
T 1s70_B 237 HAAAHWGKEEACRILVENLCDMEAV 261 (299)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHhcCCHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999987643
No 42
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.94 E-value=1.4e-26 Score=233.63 Aligned_cols=191 Identities=17% Similarity=0.168 Sum_probs=150.2
Q ss_pred cCCcHHHHHHHHhcCh----HHHHh----cccccc----ccCccchhhhhhccCc---ccHHHHHHHHhhhcccccccc-
Q 007550 200 VEDVIPILVAAFHCQL----NQLRS----HCVQRV----VRSNLDDVCLEKELPD---EVSGEIKSLRVKSDEECEANI- 263 (599)
Q Consensus 200 ~~n~~t~L~~A~~~~~----~~Ll~----~~~~~i----~~~~~~~t~L~~al~~---~~~~eI~elL~~~~~~~Ga~i- 263 (599)
...+.++||.|+..+. +.|++ .+.++. ..+..+.|++|.++.. +. .+++++|+ ++|+++
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~-~~~v~~Ll----~~ga~~~ 84 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ-NDTIALLL----DVARKTD 84 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTB-CHHHHHHH----HHHHHTT
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCC-hHHHHHHH----Hhhcccc
Confidence 4556777777777776 23443 233332 2356677777777643 44 56666663 334442
Q ss_pred ------ccc-CCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CCC---C--------------CCchHHHHHHHcCCHHHH
Q 007550 264 ------AEV-DPMHAKRVRRIHKALDSDDVELLKLLLDES-NVT---L--------------DDAYALHYAAAYCNPKVF 318 (599)
Q Consensus 264 ------n~~-d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn---~--------------~g~tpLh~Aa~~g~~~~v 318 (599)
+.. ...|..|.||||+|+..|+.++|++|+++| +++ . .|.||||+|+..|+.+++
T Consensus 85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 210 113679999999999999999999999999 654 3 699999999999999999
Q ss_pred HHHHH---cCCCCccCcCCCCChHHHHHHHcCC---------HHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHHc
Q 007550 319 KEVLN---MGLADLNLKNARGHTVLHVAARRKE---------PAVLVTLLSKGACAS-------ETTSDGQTAVAICRRM 379 (599)
Q Consensus 319 ~~LL~---~g~advn~~d~~G~TpLh~A~~~~~---------~~iv~~LL~~Gad~~-------~~d~~G~TpL~~A~~~ 379 (599)
++||. .| +++|.+|..|+||||+|+..|+ .+++++|+++|++++ .+|.+|+||||+|+..
T Consensus 165 ~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 165 KFLLQNSWQP-ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHhcccCC-CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence 99999 66 9999999999999999999988 899999999999997 4899999999999999
Q ss_pred CChhHHHHHHhcCC-Ccc
Q 007550 380 TRRKDYIEATKQGQ-ETN 396 (599)
Q Consensus 380 g~~~~i~~l~~~G~-~~~ 396 (599)
|+.+++++|++.|+ +|.
T Consensus 244 g~~~iv~~Ll~~ga~dp~ 261 (273)
T 2pnn_A 244 GKIGVLAYILQREIHEPE 261 (273)
T ss_dssp TCHHHHHHHHHHHTC---
T ss_pred ChHHHHHHHHHCCCCCch
Confidence 99999999999998 554
No 43
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.94 E-value=6.7e-26 Score=220.94 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=156.9
Q ss_pred HHHhcccccccc-CccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhC
Q 007550 217 QLRSHCVQRVVR-SNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDE 295 (599)
Q Consensus 217 ~Ll~~~~~~i~~-~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~ 295 (599)
.|++.+.++... +..+.++++.++..+. .+++++| +++|++++.. +..|.||||+|+..|+.+++++|++.
T Consensus 9 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~L----l~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 9 DFIYQGASLHNQTDRTGETALHLAARYSR-SDAAKRL----LEASADANIQ---DNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp TTEETTCCTTCCCTTTCCCHHHHHHHTTC-HHHHHHH----HHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred HHHHcCCCcccccCCCCCchHHHHHHcCC-HHHHHHH----HHcCCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 566777777665 6789999999998888 6777777 4568888877 89999999999999999999999999
Q ss_pred C--CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 007550 296 S--NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQ 370 (599)
Q Consensus 296 g--~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~ 370 (599)
| ++ +..|.||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 159 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE 159 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence 8 33 478999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCChhHHHHHHhcCCCcccc
Q 007550 371 TAVAICRRMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 371 TpL~~A~~~g~~~~i~~l~~~G~~~~~~ 398 (599)
||||+|+..|+.++++.|++.|.++...
T Consensus 160 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 187 (223)
T 2f8y_A 160 TPLFLAAREGSYETAKVLLDHFANRDIT 187 (223)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 9999999999999999999999877643
No 44
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=2.9e-26 Score=229.30 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=117.0
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CCC-----------------CCCchHHHHHHHcCCHHHHHHHHH---cCCCC
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NVT-----------------LDDAYALHYAAAYCNPKVFKEVLN---MGLAD 328 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn-----------------~~g~tpLh~Aa~~g~~~~v~~LL~---~g~ad 328 (599)
|..|+||||+|+..|+.++|++|+++| +++ ..|+||||+|+..|+.+++++||. .| ++
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-a~ 168 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ-AD 168 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CC
Confidence 679999999999999999999999999 654 359999999999999999999999 66 99
Q ss_pred ccCcCCCCChHHHHHHHcCC---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHcCChhHHHHHHhcC
Q 007550 329 LNLKNARGHTVLHVAARRKE---------PAVLVTLLSKGACA-------SETTSDGQTAVAICRRMTRRKDYIEATKQG 392 (599)
Q Consensus 329 vn~~d~~G~TpLh~A~~~~~---------~~iv~~LL~~Gad~-------~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G 392 (599)
+|.+|..|+||||+|+..++ .+++++|+++|+++ +.+|.+|+||||+|+..|+.++++.|+++|
T Consensus 169 ~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999999887 79999999999999 679999999999999999999999999998
Q ss_pred CCc
Q 007550 393 QET 395 (599)
Q Consensus 393 ~~~ 395 (599)
..+
T Consensus 249 ~~~ 251 (260)
T 3jxi_A 249 IAD 251 (260)
T ss_dssp HHH
T ss_pred CCc
Confidence 644
No 45
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.93 E-value=7.3e-26 Score=213.00 Aligned_cols=155 Identities=22% Similarity=0.213 Sum_probs=123.9
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcHHHHHHHHhcChHHHHhccccccccCccchhhhhhccCcccHHHHH
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVIPILVAAFHCQLNQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIK 249 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~t~L~~A~~~~~~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~ 249 (599)
+-|..|+..|..++++++++.+++++.+ ..++.|||++|+..+. ..++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~--d~~g~t~l~~a~~~~~------------------------------~~~~ 53 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNAS--DSDGRTPLHHAAENGH------------------------------KEVV 53 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTC------------------------------HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCC------------------------------HHHH
Confidence 3455566677777777777777776655 4455677777766554 3344
Q ss_pred HHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcC
Q 007550 250 SLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMG 325 (599)
Q Consensus 250 elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g 325 (599)
++| +.+|++++.. |.+|+||||+|+..|+.++|++||++| ++ |.+|+||||+|+..|+.+++++||..|
T Consensus 54 ~~l----l~~gad~~~~---d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g 126 (169)
T 4gpm_A 54 KLL----ISKGADVNAK---DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126 (169)
T ss_dssp HHH----HHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHH----Hhcccchhhh---ccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 444 3468888887 899999999999999999999999999 65 478999999999999999999999998
Q ss_pred CCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 007550 326 LADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASE 364 (599)
Q Consensus 326 ~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~ 364 (599)
++++.+|.+|+||||+|+.+|+.+++++|+++||+++-
T Consensus 127 -ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 127 -ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp -CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred -CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 99999999999999999999999999999999999864
No 46
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.93 E-value=2.7e-25 Score=218.21 Aligned_cols=193 Identities=16% Similarity=0.103 Sum_probs=157.7
Q ss_pred cchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC--------CCC
Q 007550 231 LDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV--------TLD 301 (599)
Q Consensus 231 ~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v--------n~~ 301 (599)
.+.+++|.++..+. .++++.|++. .|++++.. |..|+||||+|+..|+.+++++|+++| ++ |..
T Consensus 2 ~g~t~L~~A~~~g~-~~~v~~Ll~~---~g~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 74 (232)
T 2rfa_A 2 IWESPLLLAAKEND-VQALSKLLKF---EGCEVHQR---GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE 74 (232)
T ss_dssp CTTCHHHHHHHTTC-HHHHHHHHTT---TCSCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTT
T ss_pred CCCCHHHHHHHcCC-HHHHHHHHHh---cCCCcccC---CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCC
Confidence 36789999998888 4555555222 38888887 899999999999999999999999998 42 358
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCCccCcCC-------------CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 007550 302 DAYALHYAAAYCNPKVFKEVLNMGLADLNLKNA-------------RGHTVLHVAARRKEPAVLVTLLSKGACASETTSD 368 (599)
Q Consensus 302 g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~-------------~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~ 368 (599)
|+||||+|+..|+.+++++||..| ++++.++. .|+||||+|+..|+.+++++|+++|++++.+|.+
T Consensus 75 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 75 GQTALHIAVINQNVNLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL 153 (232)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CcCHHHHHHHcCCHHHHHHHHhCC-CCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence 999999999999999999999997 99999876 7999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCChhHH----HHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcchhHHHHHhhhhh
Q 007550 369 GQTAVAICRRMTRRKDY----IEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMADDFQMKLNYLENR 439 (599)
Q Consensus 369 G~TpL~~A~~~g~~~~i----~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~~~~~~l~~le~~ 439 (599)
|+||||+|+..|+.+++ +.+++.|.++.... ........|.+++.++...++..+..+++++.
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~--------~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS--------LELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCC--------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhh--------hhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 99999999999999888 99999998764222 00111245566666666666666555555544
No 47
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.93 E-value=3.8e-25 Score=216.96 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=185.2
Q ss_pred CCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcH
Q 007550 201 EDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRR 276 (599)
Q Consensus 201 ~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tp 276 (599)
+.+.++|+.|+.++. +.|++.++++...+..+.++++.++..+. .+++++| +++|++++..+ +..|.||
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~L----l~~~~~~~~~~--~~~~~t~ 79 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNR-IDLVKYY----ISKGAIVDQLG--GDLNSTP 79 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHH----HHTTCCTTCCB--TTTTBCH
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCC-HHHHHHH----HHcCCcchhhc--CCcCCCh
Confidence 456789999999997 67889999999999999999999998888 6777777 34577776552 5669999
Q ss_pred HHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCC-HHH
Q 007550 277 IHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKE-PAV 351 (599)
Q Consensus 277 Lh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~-~~i 351 (599)
||+|+..|+.+++++|++.| ++ +..|.||||+|+..|+.+++++|+..| ++++.++..|.||||+|+..++ .++
T Consensus 80 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred hHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCChHHH
Confidence 99999999999999999999 44 578999999999999999999999998 9999999999999999997776 899
Q ss_pred HHHHHhCCCCCCCCCC-CCCcHHHHHHHcCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcchhH
Q 007550 352 LVTLLSKGACASETTS-DGQTAVAICRRMTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMADDFQ 430 (599)
Q Consensus 352 v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~~~~ 430 (599)
+++|++.|++++..+. .|.||||+|+..|+.++++.|++.|.++.... ..|.+++.++...++..
T Consensus 159 ~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~~g~t~l~~A~~~~~~~ 224 (240)
T 3eu9_A 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN--------------IKGESALDLAKQRKNVW 224 (240)
T ss_dssp HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBC--------------TTSCBHHHHHHHTTCHH
T ss_pred HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------------CCCCCHHHHHHHcCcHH
Confidence 9999999999999997 99999999999999999999999998876543 34556666666666666
Q ss_pred HHHHhhhhh
Q 007550 431 MKLNYLENR 439 (599)
Q Consensus 431 ~~l~~le~~ 439 (599)
+..+.++++
T Consensus 225 ~v~~L~~~~ 233 (240)
T 3eu9_A 225 MINHLQEAR 233 (240)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 555555543
No 48
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=1.3e-25 Score=214.40 Aligned_cols=132 Identities=22% Similarity=0.237 Sum_probs=123.9
Q ss_pred cccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcC
Q 007550 258 ECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKN 333 (599)
Q Consensus 258 ~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d 333 (599)
++|++++.. +..|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|+..| +++|.+|
T Consensus 56 ~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~ 131 (192)
T 2rfm_A 56 ENFDKLEDK---DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRN 131 (192)
T ss_dssp HHHCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCC
T ss_pred Hhccccccc---cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCC
Confidence 356777776 888999999999999999999999999 54 478999999999999999999999997 9999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 334 ARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 334 ~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.|+
T Consensus 132 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 191 (192)
T 2rfm_A 132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191 (192)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999998763
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.93 E-value=4.4e-26 Score=227.63 Aligned_cols=173 Identities=18% Similarity=0.117 Sum_probs=141.4
Q ss_pred ccccccccc----cCCCCccCCcHHHHHHhc---CCHHHHHHHHhCC-CCC--------------CCCchHHHHHHHcCC
Q 007550 257 EECEANIAE----VDPMHAKRVRRIHKALDS---DDVELLKLLLDES-NVT--------------LDDAYALHYAAAYCN 314 (599)
Q Consensus 257 ~~~Ga~in~----~d~~d~~g~tpLh~A~~~---g~~e~v~~LL~~g-~vn--------------~~g~tpLh~Aa~~g~ 314 (599)
+.+|++++. . |..|+||||+|+.. |+.++|++|++.| +++ ..|+||||+|+..|+
T Consensus 26 ~~~g~~i~~~~~~~---d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~ 102 (256)
T 2etb_A 26 RWNSKYLTDSAYTE---GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102 (256)
T ss_dssp HHHTCCTTSGGGSB---TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC
T ss_pred HHcCCCcccccccC---CCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCC
Confidence 456788887 5 89999999999999 9999999999998 332 579999999999999
Q ss_pred HHHHHHHHHcCCCCccCcCCC-------------CChHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHH
Q 007550 315 PKVFKEVLNMGLADLNLKNAR-------------GHTVLHVAARRKEPAVLVTLLS---KGACASETTSDGQTAVAICRR 378 (599)
Q Consensus 315 ~~~v~~LL~~g~advn~~d~~-------------G~TpLh~A~~~~~~~iv~~LL~---~Gad~~~~d~~G~TpL~~A~~ 378 (599)
.+++++||..| +++|.++.. |+||||+|+..|+.+++++|++ +|++++.+|.+|+||||+|+.
T Consensus 103 ~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 103 LQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181 (256)
T ss_dssp HHHHHHHHHTT-CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence 99999999997 999999987 9999999999999999999999 999999999999999999999
Q ss_pred --cCChh-------HHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcchhHHHHHhhhhhh
Q 007550 379 --MTRRK-------DYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMADDFQMKLNYLENRV 440 (599)
Q Consensus 379 --~g~~~-------~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~~~~~~l~~le~~v 440 (599)
.++.+ +++.|++.|+++..... ........|.+++.++...+...+..+++++..
T Consensus 182 ~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~-------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQ-------LEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC-------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCchhhHHHHHHHHHHHHcCCCcccccc-------cccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 67777 99999999876631110 001112445666667666666665555555543
No 50
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=4.6e-25 Score=206.46 Aligned_cols=152 Identities=22% Similarity=0.204 Sum_probs=134.9
Q ss_pred chhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHH
Q 007550 232 DDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALH 307 (599)
Q Consensus 232 ~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh 307 (599)
+.++++.|+..+. .+++++| +++|++++.. +..|.||||+|+..|+.+++++|+++| ++ |..|+||||
T Consensus 14 ~~~~l~~A~~~g~-~~~v~~L----l~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 14 LGKKLLEAARAGR-DDEVRIL----MANGADVNAE---DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLR 85 (169)
T ss_dssp HHHHHHHHHHHTC-HHHHHHH----HHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccchHHHHHHcCC-HHHHHHH----HHCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence 3445555555555 5555555 3467888877 889999999999999999999999999 54 478999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q 007550 308 YAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIE 387 (599)
Q Consensus 308 ~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~ 387 (599)
+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.
T Consensus 86 ~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164 (169)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 007550 388 ATKQG 392 (599)
Q Consensus 388 l~~~G 392 (599)
|.+.|
T Consensus 165 L~~~G 169 (169)
T 2y1l_E 165 LQKLN 169 (169)
T ss_dssp HHTC-
T ss_pred HHHcC
Confidence 99876
No 51
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=3.5e-25 Score=204.95 Aligned_cols=151 Identities=19% Similarity=0.152 Sum_probs=131.6
Q ss_pred hhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHH
Q 007550 234 VCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYA 309 (599)
Q Consensus 234 t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~A 309 (599)
++++.++..+. .++++.| +++|++++.. +..|.||||+|+. |+.+++++|+++| ++ +..|+||||+|
T Consensus 7 ~~L~~A~~~g~-~~~v~~L----l~~~~~~~~~---~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 7 NELASAAARGD-LEQLTSL----LQNNVNVNAQ---NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDA 77 (162)
T ss_dssp HHHHHHHHHTC-HHHHHHH----TTSCCCTTCC---CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred hHHHHHHHcCC-HHHHHHH----HhCCCCcccc---CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34444444444 4455555 3467788777 8899999999999 9999999999999 55 47899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCChhHHHHH
Q 007550 310 AAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGAC-ASETTSDGQTAVAICRRMTRRKDYIEA 388 (599)
Q Consensus 310 a~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~~i~~l 388 (599)
+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++.|
T Consensus 78 ~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 156 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156 (162)
T ss_dssp HHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999998 699999999999999999999999999
Q ss_pred HhcCCC
Q 007550 389 TKQGQE 394 (599)
Q Consensus 389 ~~~G~~ 394 (599)
++.|++
T Consensus 157 l~~GAd 162 (162)
T 1ihb_A 157 QANGAG 162 (162)
T ss_dssp HHTC--
T ss_pred HHhCCC
Confidence 999974
No 52
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.92 E-value=8.4e-26 Score=222.77 Aligned_cols=196 Identities=16% Similarity=0.111 Sum_probs=156.4
Q ss_pred cCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCc
Q 007550 228 RSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDA 303 (599)
Q Consensus 228 ~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~ 303 (599)
.+..|.+++|.++..+. .++++.|++.....|++++.. +..|.||||+|+..|+.++|++|+++| ++ |..|+
T Consensus 4 ~d~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 79 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEE-KALTMEVIRQVKGDLAFLNFQ---NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN 79 (236)
T ss_dssp ---CCCCTTHHHHHTTC-SSSSSCCCC-----CCCCCCC---CTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCC
T ss_pred CCCCCCchhHHHHHcCC-hhHHHHHHHHhhccHHHhhcc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 55678999998887776 444444434334445567766 889999999999999999999999999 54 47899
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCC------ccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHH
Q 007550 304 YALHYAAAYCNPKVFKEVLNMGLAD------LNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTS-DGQTAVAIC 376 (599)
Q Consensus 304 tpLh~Aa~~g~~~~v~~LL~~g~ad------vn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~-~G~TpL~~A 376 (599)
||||+|+..|+.+++++|+..+ ++ ++..+..|+||||+|+..|+.+++++|+++|++++.++. .|+||||+|
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 80 TPLHLACEQGCLASVGVLTQSC-TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158 (236)
T ss_dssp CHHHHHHHHTCHHHHHHHHHST-TTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhcc-cchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999997 55 678889999999999999999999999999999999998 999999999
Q ss_pred HHcCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcchhHHHHHhhhhhhhHhhhcCcchhhH
Q 007550 377 RRMTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMADDFQMKLNYLENRVAFARLLFPSEARV 453 (599)
Q Consensus 377 ~~~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~~~~~~l~~le~~v~~~r~l~~~ea~~ 453 (599)
+..|+.+++++|++.|++++... ..|.+++.++...+.. +++++|+.+++..
T Consensus 159 ~~~~~~~~v~~Ll~~ga~~~~~~--------------~~g~tpl~~A~~~~~~-----------~~~~~Ll~~ga~~ 210 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKCGADVNRVT--------------YQGYSPYQLTWGRPST-----------RIQQQLGQLTLEN 210 (236)
T ss_dssp HHTTCHHHHHHHHTTTCCSCCCC--------------TTCCCGGGGCTTSSCH-----------HHHHHHHTTSCGG
T ss_pred HHcCCHHHHHHHHHcCCCCCccc--------------CCCCCHHHHHHccCch-----------HHHHHHHHcchhh
Confidence 99999999999999999876543 3455555566554444 4555555555543
No 53
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.92 E-value=1.3e-24 Score=208.25 Aligned_cols=182 Identities=18% Similarity=0.186 Sum_probs=154.6
Q ss_pred ccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchH
Q 007550 230 NLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYA 305 (599)
Q Consensus 230 ~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tp 305 (599)
..+.++++.++..+....+..++. ..+++++.. +..|.||||+|+..|+.+++++|+++| ++ +..|+||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~----~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 75 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQ----DTTYQVDEV---DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP 75 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHT----CTTCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccccHHHHHHHhccHHHHHHHHH----cCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 457789999988888676666662 234477776 889999999999999999999999999 55 4789999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCC---
Q 007550 306 LHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKG-ACASETTSDGQTAVAICRRMTR--- 381 (599)
Q Consensus 306 Lh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~--- 381 (599)
||+|+..|+.+++++|+..++++++.+|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++
T Consensus 76 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 155 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSH
T ss_pred HHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchh
Confidence 999999999999999997777999999999999999999999999999999999 9999999999999999999998
Q ss_pred --hhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcchhHHH
Q 007550 382 --RKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMADDFQMK 432 (599)
Q Consensus 382 --~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~~~~~~ 432 (599)
.++++.|++.|.+++... ..|.+++.++...+...+.
T Consensus 156 ~~~~~v~~Ll~~ga~~~~~~--------------~~g~t~l~~A~~~~~~~~~ 194 (201)
T 3hra_A 156 LYQDIVKLLMENGADQSIKD--------------NSGRTAMDYANQKGYTEIS 194 (201)
T ss_dssp HHHHHHHHHHHTTCCTTCCC--------------TTSCCHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHCCCCCCccC--------------CCCCCHHHHHHHcCCHhHH
Confidence 899999999998876433 3344555555555444433
No 54
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=7e-25 Score=204.31 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=136.0
Q ss_pred chhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHH
Q 007550 232 DDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALH 307 (599)
Q Consensus 232 ~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh 307 (599)
+.+++|.++..+. .++++.| ++.|++++.. |..|.||||+|+..|+.+++++|+++| ++ +..|.||||
T Consensus 3 ~~t~L~~A~~~g~-~~~v~~l----l~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 74 (167)
T 3v31_A 3 NSLSVHQLAAQGE-MLYLATR----IEQENVINHT---DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALS 74 (167)
T ss_dssp TCCCHHHHHHTTC-HHHHHHH----HHHSSCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred CcchHHHHHHCCC-HHHHHHH----HHcCCCcCCC---CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 4556666666666 4444544 2346677776 889999999999999999999999999 54 578999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q 007550 308 YAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIE 387 (599)
Q Consensus 308 ~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~ 387 (599)
+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.
T Consensus 75 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (167)
T 3v31_A 75 LACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153 (167)
T ss_dssp HHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q 007550 388 ATKQGQE 394 (599)
Q Consensus 388 l~~~G~~ 394 (599)
+.+.+..
T Consensus 154 L~~~~~~ 160 (167)
T 3v31_A 154 IESHLLK 160 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=226.44 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=152.2
Q ss_pred HHHHHHHhcCh----HHHHhcccc--ccccCccchhhhhhccCcccHHHHHHHHhhhcccccc-cccccCCCCccCCcHH
Q 007550 205 PILVAAFHCQL----NQLRSHCVQ--RVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEA-NIAEVDPMHAKRVRRI 277 (599)
Q Consensus 205 t~L~~A~~~~~----~~Ll~~~~~--~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga-~in~~d~~d~~g~tpL 277 (599)
+++|.|+..+. +.+++.+.+ ++..+..|.|++|.++..+. .+++++| +++|+ +++.. +..|.|||
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~-~~~v~~L----l~~g~~~~~~~---~~~g~tpL 149 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN-FPVVQQL----LDSGVCKVDKQ---NRAGYSPI 149 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC-HHHHHHH----HHTSCCCTTCC---CTTSCCHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC-HHHHHHH----HHCCCCcCCCC---CCCCCCHH
Confidence 34444444443 334444444 56677888888888888877 6677777 44576 77776 89999999
Q ss_pred HHHH-----hcCCHHHHHHHHhCC-C---CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCC
Q 007550 278 HKAL-----DSDDVELLKLLLDES-N---VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKE 348 (599)
Q Consensus 278 h~A~-----~~g~~e~v~~LL~~g-~---vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~ 348 (599)
|+|+ ..++.+++++|++.| . .+..|+||||+|+..|+.+++++||..| +++|.+|..|+||||+|+..|+
T Consensus 150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 150 MLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp HHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCC
Confidence 9999 678999999999999 3 2467999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcC
Q 007550 349 PAVLVTLLS-KGACASETTSDGQTAVAICRRMTRRKDYIEATKQG 392 (599)
Q Consensus 349 ~~iv~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G 392 (599)
.+++++|++ .|++++.+|.+|+||||+|+..|+.++++.|++.+
T Consensus 229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999 89999999999999999999999999999999875
No 56
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=4.6e-25 Score=198.92 Aligned_cols=130 Identities=18% Similarity=0.116 Sum_probs=122.8
Q ss_pred cccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCC
Q 007550 260 EANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNAR 335 (599)
Q Consensus 260 Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~ 335 (599)
+++++.. +..|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+. |+.+++++|+..| +++|.+|..
T Consensus 2 ~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~ 76 (136)
T 1d9s_A 2 SPGIHML---GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPA 76 (136)
T ss_dssp CCCCSCC---CCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTT
T ss_pred CCCccCC---CCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCC
Confidence 4567766 899999999999999999999999999 54 4789999999999 9999999999998 999999999
Q ss_pred -CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCC
Q 007550 336 -GHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQE 394 (599)
Q Consensus 336 -G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~ 394 (599)
|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.|++.|++
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.92 E-value=1e-24 Score=204.25 Aligned_cols=156 Identities=16% Similarity=0.163 Sum_probs=134.3
Q ss_pred hhhhhhccCcccHHHHHHHHhhhccccccc-ccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHH
Q 007550 233 DVCLEKELPDEVSGEIKSLRVKSDEECEAN-IAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALH 307 (599)
Q Consensus 233 ~t~L~~al~~~~~~eI~elL~~~~~~~Ga~-in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh 307 (599)
.++++.++..+....+..++ ..|.+ ++.. +..|+||||+|+..|+.++|++|+++| ++ +..|.||||
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll-----~~~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 74 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHL-----RKGDNLVNKP---DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS 74 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHH-----TTCSGGGGCC---CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred hhhHHHHHHcCCHHHHHHHH-----HcCcccccCC---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHH
Confidence 34566666666634444433 22333 4544 889999999999999999999999999 54 478999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q 007550 308 YAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIE 387 (599)
Q Consensus 308 ~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~ 387 (599)
+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.
T Consensus 75 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (172)
T 3v30_A 75 LASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153 (172)
T ss_dssp HHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHH
Confidence 999999999999999997 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccc
Q 007550 388 ATKQGQETNK 397 (599)
Q Consensus 388 l~~~G~~~~~ 397 (599)
+.+.|.....
T Consensus 154 L~~~~~~~~~ 163 (172)
T 3v30_A 154 IENHILKLFQ 163 (172)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHhc
Confidence 9999875544
No 58
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=3e-24 Score=197.34 Aligned_cols=145 Identities=20% Similarity=0.123 Sum_probs=125.4
Q ss_pred hhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHH
Q 007550 234 VCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYA 309 (599)
Q Consensus 234 t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~A 309 (599)
++++.++..+. .++++.| +++|++++ . +..|.||||+|+..|+.+++++|++.| ++ +..|+||||+|
T Consensus 4 ~~L~~A~~~g~-~~~v~~L----l~~g~~~~-~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 4 KKLLEAARAGQ-DDEVRIL----MANGAPFT-T---DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHTC-HHHHHHH----HHHTCCCC-C---CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHH----HHcCCCCC-c---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34444444444 4444444 23466554 2 788999999999999999999999999 54 47899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHH
Q 007550 310 AAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEA 388 (599)
Q Consensus 310 a~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l 388 (599)
+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 75 ~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 75 ASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999997 99999999999999999999999999999999999999999999999999999999998875
No 59
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.91 E-value=5e-25 Score=222.24 Aligned_cols=171 Identities=18% Similarity=0.129 Sum_probs=141.0
Q ss_pred cccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccC-CCCccCCcHHHHHHhc---CCHHHHHHHHhCC-C-
Q 007550 224 QRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVD-PMHAKRVRRIHKALDS---DDVELLKLLLDES-N- 297 (599)
Q Consensus 224 ~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d-~~d~~g~tpLh~A~~~---g~~e~v~~LL~~g-~- 297 (599)
.....+..+.++++.++..+. .++++.|++.+...|++++..+ ..+..|+||||+|+.. |+.++|++|+++| +
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSN-CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp ------CCCHHHHHHHHHTTC-SSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred cCCCCCcccchHHHHHHHcCC-HHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 344567789999999888877 4444444444455666665321 1378999999999987 9999999999987 2
Q ss_pred -------------CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCC--------------CCChHHHHHHHcCCHH
Q 007550 298 -------------VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNA--------------RGHTVLHVAARRKEPA 350 (599)
Q Consensus 298 -------------vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~--------------~G~TpLh~A~~~~~~~ 350 (599)
.|..|+||||+|+..|+.+++++||..| +++|.++. .|+||||+|+..|+.+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG-ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 2458999999999999999999999997 99999997 7999999999999999
Q ss_pred HHHHHHh---CCCCCCCCCCCCCcHHHHHHHcCC---------hhHHHHHHhcCCCcc
Q 007550 351 VLVTLLS---KGACASETTSDGQTAVAICRRMTR---------RKDYIEATKQGQETN 396 (599)
Q Consensus 351 iv~~LL~---~Gad~~~~d~~G~TpL~~A~~~g~---------~~~i~~l~~~G~~~~ 396 (599)
++++|++ +|++++.+|.+|+||||+|+..|+ .++++.|++.|++++
T Consensus 163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 9999999 999999999999999999999988 688888988887654
No 60
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.91 E-value=2.9e-25 Score=230.91 Aligned_cols=190 Identities=17% Similarity=0.117 Sum_probs=154.6
Q ss_pred HHHHHHHHcChHHHHHHHHHhchhhhh-hcccCCcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCccc
Q 007550 170 ELMYASAAFQMKELVLLFQRRLLNFVE-KALVEDVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEV 244 (599)
Q Consensus 170 eLL~~A~~~~i~~L~~~~~~~l~~~~~-k~~~~n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~ 244 (599)
..+++|....+.++++++.+.+++++. + ..++.||||+|+.++. +.|++++++++.++..+.|++|.++..+.
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~--d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPV--DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCC--STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCccccc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc
Confidence 455677777888999999999998877 5 5678999999999997 68999999999999999999998887533
Q ss_pred ------HHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHh----cCCHHHHHHHHhC-------------------
Q 007550 245 ------SGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALD----SDDVELLKLLLDE------------------- 295 (599)
Q Consensus 245 ------~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~----~g~~e~v~~LL~~------------------- 295 (599)
+..+++.+ +++++.. |..|+||||+|+. .|+.+++++|++.
T Consensus 177 ~~~~~~~~~ll~~~-------~~~~~~~---d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~ 246 (327)
T 1sw6_A 177 NYDSGTFEALLDYL-------YPCLILE---DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246 (327)
T ss_dssp HHHTTCHHHHHHHH-------GGGGGEE---CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---
T ss_pred cccHHHHHHHHHhh-------hccccCC---CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhc
Confidence 34444443 2467777 8999999999999 8999999999987
Q ss_pred -C-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 007550 296 -S-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQ 370 (599)
Q Consensus 296 -g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~ 370 (599)
| ++ +..|+||||+|+. +++|+.. ++|.+|..|+||||+|+..|+.++|++||++||+++.+|.+|+
T Consensus 247 ~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~ 317 (327)
T 1sw6_A 247 KESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 317 (327)
T ss_dssp -------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 5 33 4789999999985 8888887 5999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcC
Q 007550 371 TAVAICRRMT 380 (599)
Q Consensus 371 TpL~~A~~~g 380 (599)
||||+|++.|
T Consensus 318 TpL~~A~~~g 327 (327)
T 1sw6_A 318 RPVDFGAGLE 327 (327)
T ss_dssp CGGGGTCC--
T ss_pred CHHHHHHhcC
Confidence 9999998764
No 61
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.91 E-value=1.2e-25 Score=233.78 Aligned_cols=140 Identities=19% Similarity=0.141 Sum_probs=115.0
Q ss_pred ccccccccc-cCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCC---HHHHHHHHHcCCCC
Q 007550 257 EECEANIAE-VDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCN---PKVFKEVLNMGLAD 328 (599)
Q Consensus 257 ~~~Ga~in~-~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~---~~~v~~LL~~g~ad 328 (599)
+.+|+++|. . |..|+||||+|+..|+.++|++||++| ++ |.+|+||||+|+.+|+ .+++..||..+.++
T Consensus 117 ~~~g~dvn~~~---d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~ 193 (327)
T 1sw6_A 117 PNTQLNLNIPV---DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193 (327)
T ss_dssp TTSCCCSCSCC---STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred HhcCCCccccc---CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence 566788877 5 778888888888888888888888888 54 3678888888888877 57777777776677
Q ss_pred ccCcCCCCChHHHHHHH----cCCHHHHHHHHhCCC--------------------------------------------
Q 007550 329 LNLKNARGHTVLHVAAR----RKEPAVLVTLLSKGA-------------------------------------------- 360 (599)
Q Consensus 329 vn~~d~~G~TpLh~A~~----~~~~~iv~~LL~~Ga-------------------------------------------- 360 (599)
+|.+|..|+||||+|+. .|+.+++++|++.++
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~ 273 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHH
Confidence 88888888888888887 788888888877643
Q ss_pred -CCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccccc
Q 007550 361 -CASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 361 -d~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~ 399 (599)
+++.+|.+|+||||+|+..|+.+++++|++.|++++...
T Consensus 274 ~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d 313 (327)
T 1sw6_A 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 313 (327)
T ss_dssp HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred hCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 688899999999999999999999999999999886543
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.91 E-value=5.4e-24 Score=203.13 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=136.8
Q ss_pred CCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHH
Q 007550 269 MHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAA 344 (599)
Q Consensus 269 ~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~ 344 (599)
.|..|.||||+|+..|+.+++++|++.| ++ +..|+||||+|+..|+.+++++|+..| ++++.+|..|+||||+|+
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~ 109 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGKTPLMWSI 109 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHH
Confidence 3899999999999999999999999998 44 478999999999999999999999998 999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhh
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEV 424 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~ 424 (599)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|.++.... ..|.+++.++.
T Consensus 110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--------------~~g~t~l~~A~ 175 (192)
T 2rfm_A 110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD--------------LTGLTAEASAR 175 (192)
T ss_dssp HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC--------------TTSCBHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--------------CCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876433 34555666666
Q ss_pred hcchhHHHHHhhhh
Q 007550 425 MADDFQMKLNYLEN 438 (599)
Q Consensus 425 ~~~~~~~~l~~le~ 438 (599)
..+...+..++++.
T Consensus 176 ~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 176 IFGRQEVIKIFTEV 189 (192)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCcHHHHHHHHhc
Confidence 66555555554443
No 63
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.91 E-value=2.4e-24 Score=200.29 Aligned_cols=122 Identities=21% Similarity=0.268 Sum_probs=114.7
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAAR 345 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~ 345 (599)
+..|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+.
T Consensus 39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~ 117 (165)
T 3twr_A 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAA 117 (165)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHH
Confidence 788999999999999999999999999 54 478999999999999999999999998 9999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 346 RKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 346 ~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
.|+.+++++|+++|++++.+|.+|+||||+|+. |+.+++++|.+.|+
T Consensus 118 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 999999999999999999999999999999877 89999999998875
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.91 E-value=2.7e-24 Score=202.98 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=135.4
Q ss_pred hhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHH
Q 007550 233 DVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHY 308 (599)
Q Consensus 233 ~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~ 308 (599)
.++++.++..+.. ++++.+++. .+.+++.. +..|.||||+|+..|+.+++++|++.| ++ |..|+||||+
T Consensus 6 ~~~l~~A~~~g~~-~~v~~ll~~---~~~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (179)
T 3f6q_A 6 MDDIFTQCREGNA-VAVRLWLDN---TENDLNQG---DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHL 78 (179)
T ss_dssp -CCHHHHHHHTCH-HHHHHHHHC---TTSCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHhc---Cccccccc---CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 4455555555553 333333222 24456665 889999999999999999999999999 55 4789999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHH
Q 007550 309 AAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEA 388 (599)
Q Consensus 309 Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l 388 (599)
|+..|+.+++++||..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++..+++.+
T Consensus 79 A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L 157 (179)
T 3f6q_A 79 AASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157 (179)
T ss_dssp HHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccc
Q 007550 389 TKQGQETNK 397 (599)
Q Consensus 389 ~~~G~~~~~ 397 (599)
.+.|++++.
T Consensus 158 ~~~g~~~~~ 166 (179)
T 3f6q_A 158 EKMGQNLNR 166 (179)
T ss_dssp HHTTCCCSC
T ss_pred HHhhcCccc
Confidence 999988764
No 65
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.91 E-value=1.2e-24 Score=217.55 Aligned_cols=174 Identities=17% Similarity=0.117 Sum_probs=137.5
Q ss_pred ccccccccccCC-CCccCCcHHHHHH---hcCCHHHHHHHHhCC-CC--------------CCCCchHHHHHHHcCCHHH
Q 007550 257 EECEANIAEVDP-MHAKRVRRIHKAL---DSDDVELLKLLLDES-NV--------------TLDDAYALHYAAAYCNPKV 317 (599)
Q Consensus 257 ~~~Ga~in~~d~-~d~~g~tpLh~A~---~~g~~e~v~~LL~~g-~v--------------n~~g~tpLh~Aa~~g~~~~ 317 (599)
..+|++++..+. .+..|.||||+|+ ..|+.++|++|++.| +. |..|+||||+|+..|+.++
T Consensus 29 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~ 108 (260)
T 3jxi_A 29 LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108 (260)
T ss_dssp HHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHH
T ss_pred HhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHH
Confidence 345777776631 2478999999999 779999999999987 31 2389999999999999999
Q ss_pred HHHHHHcCCCCccCcC--------------CCCChHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHcC
Q 007550 318 FKEVLNMGLADLNLKN--------------ARGHTVLHVAARRKEPAVLVTLLS---KGACASETTSDGQTAVAICRRMT 380 (599)
Q Consensus 318 v~~LL~~g~advn~~d--------------~~G~TpLh~A~~~~~~~iv~~LL~---~Gad~~~~d~~G~TpL~~A~~~g 380 (599)
+++||..| +++|.++ ..|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..+
T Consensus 109 v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~ 187 (260)
T 3jxi_A 109 VELLVEKG-ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187 (260)
T ss_dssp HHHHHHTT-CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHC
T ss_pred HHHHHhCC-CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhc
Confidence 99999998 9999999 689999999999999999999999 99999999999999999999988
Q ss_pred C---------hhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcchhHHHHHhhhh
Q 007550 381 R---------RKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMADDFQMKLNYLEN 438 (599)
Q Consensus 381 ~---------~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~~~~~~l~~le~ 438 (599)
+ .++++.|++.|++++.... ........|.+++.++...+...+..+++++
T Consensus 188 ~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~-------~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 188 DNTRENTKFVTKMYDLLLIKCAKLFPDTN-------LEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCTTCC-------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhCcccccccc-------hhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 7 5888999998876532110 0011123455566666655555544444443
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=3.5e-23 Score=192.78 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=133.8
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcC
Q 007550 272 KRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRK 347 (599)
Q Consensus 272 ~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~ 347 (599)
.|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|+..| ++++.+|..|+||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcC
Confidence 5789999999999999999999999 44 578999999999999999999999997 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcc
Q 007550 348 EPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMAD 427 (599)
Q Consensus 348 ~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~ 427 (599)
+.+++++|+++|++++.+|..|+||||+|+..|+.++++.+++.|.++.... ..+.+++.++...+
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~~g~t~l~~A~~~~ 146 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET--------------DSGYNSMDLAVALG 146 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--------------TTSCCHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------------CCCCCHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999998776433 34555666666555
Q ss_pred hhHHHHHhhhhh
Q 007550 428 DFQMKLNYLENR 439 (599)
Q Consensus 428 ~~~~~l~~le~~ 439 (599)
...+..+.+++.
T Consensus 147 ~~~~~~~L~~~~ 158 (167)
T 3v31_A 147 YRSVQQVIESHL 158 (167)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 555554444443
No 67
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.90 E-value=3.4e-23 Score=190.44 Aligned_cols=148 Identities=13% Similarity=0.069 Sum_probs=126.8
Q ss_pred hhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHH
Q 007550 234 VCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYA 309 (599)
Q Consensus 234 t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~A 309 (599)
++++.++..+. .++++.|++. .+.+++.. +..|.||||+ +..|+.+++++|+++| ++ |..|+||||+|
T Consensus 4 ~~L~~A~~~g~-~~~v~~ll~~---~~~~~~~~---~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 4 DRLSGAAARGD-VQEVRRLLHR---ELVHPDAL---NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDA 75 (156)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHT---TCCCTTCC---CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred hHHHHHHHhCC-HHHHHHHHHh---hCcCcccc---CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 44555555555 3333333222 23466666 8899999999 9999999999999999 54 47899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHH
Q 007550 310 AAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEAT 389 (599)
Q Consensus 310 a~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~ 389 (599)
+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++ ++++.+|.+|+||||+|+..|+.++++.++
T Consensus 76 ~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp HHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999 999999999999999999999999999987
Q ss_pred hc
Q 007550 390 KQ 391 (599)
Q Consensus 390 ~~ 391 (599)
+.
T Consensus 154 ~~ 155 (156)
T 1bd8_A 154 GH 155 (156)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 68
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=1.8e-23 Score=188.50 Aligned_cols=122 Identities=22% Similarity=0.193 Sum_probs=115.6
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAAR 345 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~ 345 (599)
...|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+.
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHH
Confidence 667889999999999999999999999 55 478999999999999999999999997 9999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcC
Q 007550 346 RKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQG 392 (599)
Q Consensus 346 ~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G 392 (599)
.|+.+++++|+++|++++.+|.+|+||||+|+..|+.++++.|++.|
T Consensus 90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999876
No 69
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.89 E-value=8.1e-24 Score=199.27 Aligned_cols=152 Identities=24% Similarity=0.400 Sum_probs=135.7
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCccc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i 124 (599)
.|.+.+.++|.+++.++ .+|||+|+++|+.|+|||+||++||+||++||.+++.++ ...+|.++++.|.
T Consensus 16 ~p~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~------~~~~i~l~~~~~~--- 84 (172)
T 3htm_A 16 VPECRLADELGGLWENS--RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES------KKNRVEINDVEPE--- 84 (172)
T ss_dssp CCCCCHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGG------GTTEEEECSSCHH---
T ss_pred CCHHHHHHHHHHHHhCC--CCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCcccc------CCCeEEecCCCHH---
Confidence 45678999999999999 999999999999999999999999999999999999887 6678999885554
Q ss_pred CHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcH
Q 007550 125 GYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVI 204 (599)
Q Consensus 125 ~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~ 204 (599)
+|..+|+|+|||++.+.+ +.+.+++.+|.+|+++.+++.|.+++...++ .+|+.
T Consensus 85 ---~f~~~l~~~Yt~~~~~~~--------------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~ 138 (172)
T 3htm_A 85 ---VFKEMMCFIYTGKAPNLD--------------------KMADDLLAAADKYALERLKVMCEDALCSNLS---VENAA 138 (172)
T ss_dssp ---HHHHHHHHHHHSCCTTGG--------------------GTHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTTHH
T ss_pred ---HHHHHHHHHhCCCCCCcH--------------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC---HHHHH
Confidence 999999999999987653 3468999999999999999999999998777 78999
Q ss_pred HHHHHHHhcChHHHHhccccccccCccch
Q 007550 205 PILVAAFHCQLNQLRSHCVQRVVRSNLDD 233 (599)
Q Consensus 205 t~L~~A~~~~~~~Ll~~~~~~i~~~~~~~ 233 (599)
.++.+|..++...|.+.|.+++.++....
T Consensus 139 ~~~~~A~~~~~~~L~~~~~~~i~~~~~~v 167 (172)
T 3htm_A 139 EILILADLHSADQLKTQAVDFINYHATDV 167 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876543
No 70
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=7.7e-23 Score=180.11 Aligned_cols=122 Identities=30% Similarity=0.371 Sum_probs=117.0
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcC
Q 007550 272 KRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRK 347 (599)
Q Consensus 272 ~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~ 347 (599)
+|.||||+|+..|+.+++++|+++| ++ +..|.||||+|+..|+.+++++|+..| ++++.+|..|+||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcC
Confidence 5899999999999999999999999 54 578999999999999999999999998 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCC
Q 007550 348 EPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQE 394 (599)
Q Consensus 348 ~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~ 394 (599)
+.+++++|+++|++++.+|..|+||||+|+..|+.++++.+++.|++
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999874
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=6.6e-23 Score=190.47 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=120.5
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-----CCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-----NVTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAA 344 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-----~vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~ 344 (599)
+..|.||||.|+..|+.++++.|++.+ ..+..|+||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHHH
Confidence 678899999999999999999999976 23467899999999999999999999998 999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccccc
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~ 399 (599)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|.+++...
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 138 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 9999999999999999999999999999999999999999999999998876533
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.89 E-value=7.8e-23 Score=187.83 Aligned_cols=124 Identities=18% Similarity=0.201 Sum_probs=117.9
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCC-C--CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCH
Q 007550 273 RVRRIHKALDSDDVELLKLLLDES-N--VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEP 349 (599)
Q Consensus 273 g~tpLh~A~~~g~~e~v~~LL~~g-~--vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~ 349 (599)
+.||||.|+..|+.+++++|++.| + .+..|.||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcChH
Confidence 358999999999999999999999 3 4578999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccc
Q 007550 350 AVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNK 397 (599)
Q Consensus 350 ~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~ 397 (599)
+++++|+++|++++.+|..|+||||+|+..|+.++++.+++.|.+++.
T Consensus 81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 128 (153)
T 1awc_B 81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128 (153)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 999999999999999999999999999999999999999999987764
No 73
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=8.5e-23 Score=188.80 Aligned_cols=150 Identities=19% Similarity=0.110 Sum_probs=131.9
Q ss_pred CcHHHHHHHHhcCh----HHHHhccccccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHH
Q 007550 202 DVIPILVAAFHCQL----NQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRI 277 (599)
Q Consensus 202 n~~t~L~~A~~~~~----~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpL 277 (599)
...++|+.|+..+. +.|++.+.++...+..+.++++.+.. +. .+++++| +++|++++.. +..|.|||
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~-~~~v~~L----l~~g~~~~~~---~~~g~t~L 74 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GN-PEIARRL----LLRGANPDLK---DRTGFAVI 74 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SC-HHHHHHH----HHTTCCTTCC---CTTSCCHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-Cc-HHHHHHH----HHcCCCCCCC---CCCCCCHH
Confidence 45688999998886 57778888888888889999998887 66 6777777 4568898887 88999999
Q ss_pred HHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCC-ccCcCCCCChHHHHHHHcCCHHHH
Q 007550 278 HKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLAD-LNLKNARGHTVLHVAARRKEPAVL 352 (599)
Q Consensus 278 h~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~ad-vn~~d~~G~TpLh~A~~~~~~~iv 352 (599)
|+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|+..| ++ ++.+|..|+||||+|+..|+.+++
T Consensus 75 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~~ 153 (162)
T 1ihb_A 75 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVV 153 (162)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 9999999999999999999 54 478999999999999999999999998 66 799999999999999999999999
Q ss_pred HHHHhCCCC
Q 007550 353 VTLLSKGAC 361 (599)
Q Consensus 353 ~~LL~~Gad 361 (599)
++|+++|||
T Consensus 154 ~~Ll~~GAd 162 (162)
T 1ihb_A 154 SLMQANGAG 162 (162)
T ss_dssp HHHHHTC--
T ss_pred HHHHHhCCC
Confidence 999999986
No 74
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=1.1e-22 Score=190.23 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=129.8
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAAR 345 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~ 345 (599)
...+.+|||+|+..|+.++|++|+++| ++ |..|.||||+|+..|+.+++++|+..| ++++.+|..|+||||+|+.
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHH
Confidence 566789999999999999999999999 55 478999999999999999999999998 9999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhh
Q 007550 346 RKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVM 425 (599)
Q Consensus 346 ~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~ 425 (599)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|.++.... ..+.+++.++..
T Consensus 90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~~g~t~l~~A~~ 155 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD--------------KFGKTAFDISID 155 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--------------TTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------------CCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765433 334555555555
Q ss_pred cchhHHHH
Q 007550 426 ADDFQMKL 433 (599)
Q Consensus 426 ~~~~~~~l 433 (599)
.++..+..
T Consensus 156 ~~~~~~~~ 163 (169)
T 2y1l_E 156 NGNEDLAE 163 (169)
T ss_dssp TTCHHHHH
T ss_pred hCCHHHHH
Confidence 55444433
No 75
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.89 E-value=1.6e-22 Score=189.16 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=129.6
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCC-C----CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcC
Q 007550 273 RVRRIHKALDSDDVELLKLLLDES-N----VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRK 347 (599)
Q Consensus 273 g~tpLh~A~~~g~~e~v~~LL~~g-~----vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~ 347 (599)
+.||||+|+..|+.++++.|++.| + .+..|+||||+|+..|+.+++++||..| +++|.+|..|+||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcccCCCHHHHHHHCC
Confidence 468999999999999999999998 2 3678999999999999999999999998 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcc
Q 007550 348 EPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMAD 427 (599)
Q Consensus 348 ~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~ 427 (599)
+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|.++.... ..+.+++.++...+
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~--------------~~g~t~l~~A~~~~ 146 (172)
T 3v30_A 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA--------------DSGYTPMDLAVALG 146 (172)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--------------TTSCCHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC--------------CCCCCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998776433 34555556665555
Q ss_pred hhHHHHHhhh
Q 007550 428 DFQMKLNYLE 437 (599)
Q Consensus 428 ~~~~~l~~le 437 (599)
...+..+.++
T Consensus 147 ~~~~~~~L~~ 156 (172)
T 3v30_A 147 YRKVQQVIEN 156 (172)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 5444444433
No 76
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=6.4e-24 Score=191.39 Aligned_cols=129 Identities=19% Similarity=0.146 Sum_probs=113.6
Q ss_pred cccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCC
Q 007550 260 EANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNAR 335 (599)
Q Consensus 260 Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~ 335 (599)
|+|+ .. |..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|+..| ++++.+|..
T Consensus 1 G~d~-~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~ 75 (137)
T 3c5r_A 1 GIDP-FT---NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQ 75 (137)
T ss_dssp ---C-CC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGG
T ss_pred CCCC-Cc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCC
Confidence 5566 34 899999999999999999999999999 54 478999999999999999999999998 999999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 336 GHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 336 G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..+++.++.+.+.
T Consensus 76 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 76 NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999998887777776665543
No 77
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.8e-23 Score=193.03 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=115.7
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCCh-HHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHT-VLHVAA 344 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~T-pLh~A~ 344 (599)
+..|.||||+|+..|+.++|++|+++| ++ |..|+||||+|+ .|+.+++++||..| +++|.+|..|+| |||+|+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL~~A~ 86 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVHDAA 86 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHH
Confidence 788999999999999999999999999 54 478999999996 89999999999997 999999999999 999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccc
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~ 398 (599)
..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|++.|+++...
T Consensus 87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~ 140 (156)
T 1bi7_B 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS 140 (156)
T ss_dssp HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------
T ss_pred HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999999999999999999987643
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=1.3e-23 Score=208.37 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=116.2
Q ss_pred cchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHH
Q 007550 231 LDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYAL 306 (599)
Q Consensus 231 ~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpL 306 (599)
.|.|+++.+..... .++++.| +++|++++. +..|.||||+|+..|+.++|++|++.| ++ |..|+|||
T Consensus 4 ~g~t~L~~a~~~~~-~~~~~~l----l~~g~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L 74 (239)
T 1ycs_B 4 TGQVSLPPGKRTNL-RKTGSER----IAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITAL 74 (239)
T ss_dssp ------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHH
T ss_pred cccccCchhhhhhh-HHHHHHH----hccCCCccc----CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 45677777666665 5555555 467888874 467899999999999999999999999 55 47899999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHH--HHcCChh
Q 007550 307 HYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQ-TAVAIC--RRMTRRK 383 (599)
Q Consensus 307 h~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~-TpL~~A--~~~g~~~ 383 (599)
|+|+..|+.+++++||.+| +++|.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+| +..|+.+
T Consensus 75 ~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~ 153 (239)
T 1ycs_B 75 HNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153 (239)
T ss_dssp HHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHH
Confidence 9999999999999999997 99999999999999999999999999999999999999998887 999999 7889999
Q ss_pred HHHHHHhcCCCcc
Q 007550 384 DYIEATKQGQETN 396 (599)
Q Consensus 384 ~i~~l~~~G~~~~ 396 (599)
++++|++.|+++.
T Consensus 154 ~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 154 CSQFLYGVQEKMG 166 (239)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHhhhccc
Confidence 9999999987554
No 79
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.89 E-value=2.3e-22 Score=189.68 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=117.6
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC--CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES--NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAA 344 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g--~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~ 344 (599)
+..+.+|||.|+..|+.++|++|++.+ ++ +..|+||||+|+..|+.+++++||..| +++|.+|..|+||||+|+
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence 346789999999999999999999996 33 478999999999999999999999998 999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccccc
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~ 399 (599)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|.++....
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 135 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc
Confidence 9999999999999999999999999999999999999999999999999876533
No 80
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=1.9e-23 Score=199.58 Aligned_cols=149 Identities=10% Similarity=0.034 Sum_probs=124.6
Q ss_pred hhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCH----HHHHHHHhCC-CCC---CCCchH
Q 007550 234 VCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDV----ELLKLLLDES-NVT---LDDAYA 305 (599)
Q Consensus 234 t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~----e~v~~LL~~g-~vn---~~g~tp 305 (599)
++++.++..+....+..++. .+++..+ +..|+||||+|+..|+. +++++||++| ++| ..|+||
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~-------~~~~~~~--~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~Tp 78 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFE-------KGYEDKE--SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTL 78 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHH-------HSSSCHH--HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCT
T ss_pred cHHHHHHHcCCHHHHHHHHh-------cCccccc--ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 45555666666555555541 2444441 37899999999999975 5999999999 654 789999
Q ss_pred HHHHHHcCC------HHHHHHHHHcCCCCccCcCCCCC-hHHHHHHHcC-----CHHHHHHHHh-CCCCCCCCCCCCCcH
Q 007550 306 LHYAAAYCN------PKVFKEVLNMGLADLNLKNARGH-TVLHVAARRK-----EPAVLVTLLS-KGACASETTSDGQTA 372 (599)
Q Consensus 306 Lh~Aa~~g~------~~~v~~LL~~g~advn~~d~~G~-TpLh~A~~~~-----~~~iv~~LL~-~Gad~~~~d~~G~Tp 372 (599)
||+|+..|+ .+++++||.+| ||+|.+|..|+ ||||+|+..+ ..+++++|++ +|++++.+|..|+||
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp 157 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence 999999987 57899999998 99999999999 9999999844 4579999999 999999999999999
Q ss_pred HHHHHHcCChhHHHHHHhcC
Q 007550 373 VAICRRMTRRKDYIEATKQG 392 (599)
Q Consensus 373 L~~A~~~g~~~~i~~l~~~G 392 (599)
||+|+..|+..+++++.+..
T Consensus 158 L~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998764
No 81
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.88 E-value=2.6e-23 Score=205.21 Aligned_cols=140 Identities=21% Similarity=0.226 Sum_probs=127.1
Q ss_pred ccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCc
Q 007550 257 EECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLK 332 (599)
Q Consensus 257 ~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~ 332 (599)
+.+|++++..+..+..|.||||+|+..|+.++|++|++.| ++ |..|+||||+|+..|+.+++++||..| +++|.+
T Consensus 5 l~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~ 83 (229)
T 2vge_A 5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG-ANVNSP 83 (229)
T ss_dssp -----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred hccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC
Confidence 5578898888777889999999999999999999999999 55 478999999999999999999999997 999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHH--HHcCChhHHHHHHhcCCCccc
Q 007550 333 NARGHTVLHVAARRKEPAVLVTLLSKGACASETT-SDGQTAVAIC--RRMTRRKDYIEATKQGQETNK 397 (599)
Q Consensus 333 d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d-~~G~TpL~~A--~~~g~~~~i~~l~~~G~~~~~ 397 (599)
|..|+||||+|+..|+.+++++|+++|++++.++ .+|+||||+| +..|+.+++++|++.|.+++.
T Consensus 84 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~ 151 (229)
T 2vge_A 84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151 (229)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc
Confidence 9999999999999999999999999999999997 6999999999 999999999999999876654
No 82
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=206.09 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=135.5
Q ss_pred ccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC--CC---CCCCchHHHHHH-----HcCCHHHHHHHHHcCCCCccCc
Q 007550 263 IAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES--NV---TLDDAYALHYAA-----AYCNPKVFKEVLNMGLADLNLK 332 (599)
Q Consensus 263 in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g--~v---n~~g~tpLh~Aa-----~~g~~~~v~~LL~~g~advn~~ 332 (599)
+|.. |.+|.||||+|+..|+.++|++|++.| ++ |..|+||||+|+ ..++.++++.|+..| ++++..
T Consensus 104 ~n~~---d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g-~~~~~~ 179 (276)
T 4hbd_A 104 VNIA---DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKA 179 (276)
T ss_dssp HTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS-CTTCCC
T ss_pred CcCC---CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC-CCcccc
Confidence 5555 899999999999999999999999999 43 478999999999 668899999999998 999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHh-cCCCcccccccHHHHHHHHhc
Q 007550 333 NARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATK-QGQETNKDRLCIDVLEREMRR 411 (599)
Q Consensus 333 d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~-~G~~~~~~~~~~~ile~~~~~ 411 (599)
+..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.++++.|++ .|.+++...
T Consensus 180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d------------ 247 (276)
T 4hbd_A 180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD------------ 247 (276)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC------------
Confidence 9999999999999999999999999999999999999999999999999999999999 788776433
Q ss_pred cCCCCCccchhhhhcchhHHHHHhh
Q 007550 412 NSMSGNLALSSEVMADDFQMKLNYL 436 (599)
Q Consensus 412 ~p~~~~~~~~~~~~~~~~~~~l~~l 436 (599)
..|.+++.++...+...+..+++
T Consensus 248 --~~g~TpL~~A~~~g~~~iv~~Ll 270 (276)
T 4hbd_A 248 --RDGSTALMVALDAGQSEIASMLY 270 (276)
T ss_dssp --TTSCCHHHHHHHHTCHHHHHHHH
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHH
Confidence 34556666666655555444443
No 83
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=9.6e-22 Score=180.68 Aligned_cols=146 Identities=17% Similarity=0.167 Sum_probs=125.9
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCC--CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcC
Q 007550 273 RVRRIHKALDSDDVELLKLLLDES--NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRK 347 (599)
Q Consensus 273 g~tpLh~A~~~g~~e~v~~LL~~g--~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~ 347 (599)
|.||||+|+..|+.++++.|++.+ ++ |..|+||||+ +..|+.+++++|+..| +++|.+|..|+||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcC
Confidence 569999999999999999999985 43 5789999999 9999999999999997 999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccccccHHHHHHHHhccCCCCCccchhhhhcc
Q 007550 348 EPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDRLCIDVLEREMRRNSMSGNLALSSEVMAD 427 (599)
Q Consensus 348 ~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~~~~~ile~~~~~~p~~~~~~~~~~~~~~ 427 (599)
+.+++++|+++|++++.+|..|+||||+|+..|+.++++.+++. .++.... ..|.+++..+...+
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~--------------~~g~t~l~~A~~~~ 144 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRD--------------ARGLTPLELALQRG 144 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCC--------------TTSCCHHHHHHHSC
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcC--------------CCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999988 5544322 34555566665555
Q ss_pred hhHHHHHh
Q 007550 428 DFQMKLNY 435 (599)
Q Consensus 428 ~~~~~l~~ 435 (599)
...+..+.
T Consensus 145 ~~~~v~~L 152 (156)
T 1bd8_A 145 AQDLVDIL 152 (156)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 55444333
No 84
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.87 E-value=1.5e-22 Score=203.32 Aligned_cols=171 Identities=18% Similarity=0.247 Sum_probs=136.8
Q ss_pred cCChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCC--CCCCCcCCCCCeeeecccccC
Q 007550 44 NLSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGND--NDGSAVSEGKPKYLMTELVPY 121 (599)
Q Consensus 44 ~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~--e~~~~~~~~~~~i~l~d~~~~ 121 (599)
..+.+.+.++|.+++.++ .+|||+|+|+|+.|+|||+||+++|+||++||.+++. ++ ...+|.++++
T Consensus 12 ~~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~------~~~~i~l~~v--- 80 (256)
T 3hve_A 12 PQHAARLLRALSSFREES--RFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDG------STYKIELEGI--- 80 (256)
T ss_dssp TTTHHHHHHHHHTCCC----CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------------CEEECSSC---
T ss_pred hHHHHHHHHHHHHHHhcC--CCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccC------CCCeEEeCCC---
Confidence 457789999999999999 9999999999999999999999999999999998876 44 5578999885
Q ss_pred cccCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhhhcccC
Q 007550 122 GKVGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVEKALVE 201 (599)
Q Consensus 122 ~~i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~ 201 (599)
++++|..+|+|+|||++.+...+ +.+++.+|..|+++.++..|.+++....+ .+
T Consensus 81 ---~~~~f~~ll~~~Yt~~~~i~~~~--------------------v~~ll~~A~~l~i~~l~~~c~~~L~~~l~---~~ 134 (256)
T 3hve_A 81 ---SVMVMREILDYIFSGQIRLNEDT--------------------IQDVVQAADLLLLTDLKTLCCEFLEGCIA---AE 134 (256)
T ss_dssp ---CHHHHHHHHHHHHHSCCCCC-CC--------------------HHHHHHHHHHHTCHHHHHHHHHHHHHTCC---SS
T ss_pred ---CHHHHHHHHhhccCCCCcccHhH--------------------HHHHHHHHHHHChHHHHHHHHHHHHhhCC---Hh
Confidence 45599999999999999877544 58999999999999999999999998887 78
Q ss_pred CcHHHHHHHHhcChHHHHhccccccccCccchhhhhhccCcccHHHHHHHH
Q 007550 202 DVIPILVAAFHCQLNQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLR 252 (599)
Q Consensus 202 n~~t~L~~A~~~~~~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL 252 (599)
|+..++.+|..++...|.+.|.+++..+............... ..+.++|
T Consensus 135 n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~-~~l~~lL 184 (256)
T 3hve_A 135 NCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSP-QKLKEVI 184 (256)
T ss_dssp TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCH-HHHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCH-HHHHHHH
Confidence 9999999999999999999999999888665544332222222 4455555
No 85
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=2.5e-22 Score=177.49 Aligned_cols=109 Identities=26% Similarity=0.262 Sum_probs=100.5
Q ss_pred CCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHH
Q 007550 269 MHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAA 344 (599)
Q Consensus 269 ~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~ 344 (599)
.+..|.||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence 3677899999999999999999999999 54 468999999999999999999999997 999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~ 378 (599)
..|+.+++++|+++|++++.+|.+|+||||+|..
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 9999999999999999999999999999999943
No 86
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.87 E-value=2.9e-22 Score=198.52 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=92.8
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CC--CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHc
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NV--TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARR 346 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v--n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~ 346 (599)
+..|.||||.|+..++.++++.|+++| ++ +..|.||||+|+..|+.++++.||..| +++|.+|..|+||||+|+..
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHc
Confidence 456999999999999999999999999 55 467899999999999999999999998 99999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcccc
Q 007550 347 KEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 347 ~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~ 398 (599)
|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|++.|.+++..
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 132 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee
Confidence 9999999999999999999999999999999999999999999999987643
No 87
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.87 E-value=6e-23 Score=187.73 Aligned_cols=138 Identities=25% Similarity=0.421 Sum_probs=100.6
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCccc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i 124 (599)
.|++.+.+++.+++.++ .+|||+|.++|+.|+|||+||++||+||++||.+++.++ ....|.++++.
T Consensus 7 ~p~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~------~~~~i~l~~~~----- 73 (145)
T 4eoz_A 7 VPECRLADELGGLWENS--RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES------KKNRVEINDVE----- 73 (145)
T ss_dssp CCCCCHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHH------HHTEEEECSSC-----
T ss_pred CChHHHHHHHHHHHhCC--CCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCC------CCceEEecCCC-----
Confidence 35578999999999999 999999999999999999999999999999999988876 55789998854
Q ss_pred CHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcH
Q 007550 125 GYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVI 204 (599)
Q Consensus 125 ~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~ 204 (599)
+++|..+|+|+|||++.... +.+.+++.+|.+|+++.++..|.+++...++ .+|+.
T Consensus 74 -~~~~~~~l~~~Y~~~~~~~~--------------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~ 129 (145)
T 4eoz_A 74 -PEVFKEMMCFIYTGKAPNLD--------------------KMADDLLAAADKYALERLKVMCEDALCSNLS---VENAA 129 (145)
T ss_dssp -HHHHHHHHHHHHHSCCTTGG--------------------GTHHHHHHHHHHTTCHHHHHHHHCC--------------
T ss_pred -HHHHHHHHHhhccCccCCcH--------------------HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---HHHHH
Confidence 45999999999999987553 3468999999999999999999999998877 78999
Q ss_pred HHHHHHHhcChHHHH
Q 007550 205 PILVAAFHCQLNQLR 219 (599)
Q Consensus 205 t~L~~A~~~~~~~Ll 219 (599)
.++.+|..++...|.
T Consensus 130 ~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 130 EILILADLHSADQLK 144 (145)
T ss_dssp ---------------
T ss_pred HHHHHHHHhCHHHhc
Confidence 999999999987764
No 88
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.86 E-value=4.4e-22 Score=183.67 Aligned_cols=137 Identities=16% Similarity=0.047 Sum_probs=101.8
Q ss_pred cchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCch-H
Q 007550 231 LDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAY-A 305 (599)
Q Consensus 231 ~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~t-p 305 (599)
.+.++++.++..+. .+++++| +.+|++++.. +..|.||||+|+ .|+.+++++|+++| ++ |..|+| |
T Consensus 11 ~~~t~L~~A~~~g~-~~~v~~L----l~~g~~~~~~---~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 11 PSADWLATAAARGR-VEEVRAL----LEAGANPNAP---NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp CSTTHHHHHHHHTC-HHHHHHH----HTTTCCTTCC---CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred cchHHHHHHHHcCC-HHHHHHH----HHcCCCCCCC---CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 34445555444444 4555555 3468888877 889999999996 99999999999999 55 467998 9
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 007550 306 LHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICR 377 (599)
Q Consensus 306 Lh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~ 377 (599)
||+|+..|+.+++++||.+| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||.+-+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence 99999999999999999998 999999999999999999999999999999999999999999999987543
No 89
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.86 E-value=2.4e-22 Score=204.43 Aligned_cols=177 Identities=16% Similarity=0.196 Sum_probs=144.1
Q ss_pred cCChhHHHHHHHHHHcCCCCCcCCcEEEEC---CeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeeccccc
Q 007550 44 NLSLSKLSSNLEKLLLDAEHDYTDADIVVE---GKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVP 120 (599)
Q Consensus 44 ~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~---g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~ 120 (599)
..+.+.+.+.|.+++.++ .+|||+|+|+ |+.|+|||+||+++|+||++||.+++.|+ ...+|.|+++..
T Consensus 13 ~~h~~~ll~~l~~l~~~~--~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~------~~~~i~l~~~~~ 84 (279)
T 3i3n_A 13 SSHCSELSWRQNEQRRQG--LFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSES------RSGRVEMRKWSS 84 (279)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------------EEECCCCSS
T ss_pred HhHHHHHHHHHHHHHhcC--CCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccc------cCCeEEeccccc
Confidence 357789999999999999 9999999998 99999999999999999999999999987 778999997655
Q ss_pred CcccCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhhhccc
Q 007550 121 YGKVGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVEKALV 200 (599)
Q Consensus 121 ~~~i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~ 200 (599)
.+++++++|..+|+|+|||++.+...+ +.+++.+|.+|+++.++..|.+++...++ .
T Consensus 85 ~~~v~~~~f~~ll~~~Ytg~~~i~~~~--------------------v~~ll~~A~~l~i~~L~~~c~~~L~~~l~---~ 141 (279)
T 3i3n_A 85 EPGPEPDTVEAVIEYMYTGRIRVSTGS--------------------VHEVLELADRFLLIRLKEFCGEFLKKKLH---L 141 (279)
T ss_dssp TTCSCHHHHHHHHHHHHHSEEEEETTT--------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCC---T
T ss_pred cCCCCHHHHHHHHHhhCcCCcccCHHH--------------------HHHHHHHHHHHCcHHHHHHHHHHHHHcCC---c
Confidence 445888899999999999999776533 58999999999999999999999998877 7
Q ss_pred CCcHHHHHHHHhcChHHHHhccccccccCccchhhhhhccCcccHHHHHHHH
Q 007550 201 EDVIPILVAAFHCQLNQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLR 252 (599)
Q Consensus 201 ~n~~t~L~~A~~~~~~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL 252 (599)
+|+..++.+|..++...|.+.|.+++..+............... ..+.++|
T Consensus 142 ~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~-~~l~~lL 192 (279)
T 3i3n_A 142 SNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPF-HLIRDWL 192 (279)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCH-HHHHHHH
T ss_pred chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCH-HHHHHHh
Confidence 99999999999999999999999999888665544333222222 5555665
No 90
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.85 E-value=1.1e-21 Score=202.74 Aligned_cols=151 Identities=24% Similarity=0.402 Sum_probs=132.1
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCccc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i 124 (599)
.|.+.|.++|..++.++ .+|||+|.|+|+.|+|||+|||+||+||++||.+++.|+ ...+|.|+|+.|.
T Consensus 156 ~p~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~------~~~~i~l~~~~~~--- 224 (312)
T 3hqi_A 156 VPECRLADELGGLWENS--RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES------KKNRVEINDVEPE--- 224 (312)
T ss_dssp CCCCCHHHHHHHHHHTT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----------CCSEEEECSSCHH---
T ss_pred CCCchHHHHHHHHHhCC--CCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCcccc------CCceEEecCCCHH---
Confidence 45678999999999999 999999999999999999999999999999999999887 7789999986665
Q ss_pred CHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhhhcccCCcH
Q 007550 125 GYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVEKALVEDVI 204 (599)
Q Consensus 125 ~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~k~~~~n~~ 204 (599)
+|+.+|+|+|||.+... .+.+.++|.+|++|+++.|+..|++++...++ .+|+.
T Consensus 225 ---~f~~~L~~iYt~~~~~~--------------------~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~n~~ 278 (312)
T 3hqi_A 225 ---VFKEMMCFIYTGKAPNL--------------------DKMADDLLAAADKYALERLKVMCEDALCSNLS---VENAA 278 (312)
T ss_dssp ---HHHHHHHHHHHSCCTTH--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---TTTHH
T ss_pred ---HHHHHHHhhcCCCCCCh--------------------HHHHHHHHHHHHHhCHHHHHHHHHHHHHccCC---HHHHH
Confidence 99999999999998654 26778999999999999999999999988777 68999
Q ss_pred HHHHHHHhcChHHHHhccccccccCccc
Q 007550 205 PILVAAFHCQLNQLRSHCVQRVVRSNLD 232 (599)
Q Consensus 205 t~L~~A~~~~~~~Ll~~~~~~i~~~~~~ 232 (599)
..|.+|..+++..|.+.|.+++..+...
T Consensus 279 ~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 306 (312)
T 3hqi_A 279 EILILADLHSADQLKTQAVDFINYHATD 306 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887543
No 91
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.85 E-value=2.3e-24 Score=212.74 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=61.1
Q ss_pred ccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcC-
Q 007550 259 CEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKN- 333 (599)
Q Consensus 259 ~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d- 333 (599)
+|++++.. |..|+||||+|+..|+.++|++|++.| ++ |..|+||||+|+..|+.+++++||..| ++++.++
T Consensus 43 ~g~~~~~~---d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~ 118 (229)
T 2vge_A 43 EMNDPSQP---NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTL 118 (229)
T ss_dssp HSSCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCS
T ss_pred cCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccC
Confidence 34455444 555555555555555555555555555 33 245555555555555555555555554 5555554
Q ss_pred CCCChHHHHH--HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 007550 334 ARGHTVLHVA--ARRKEPAVLVTLLSKGACASETTSDGQTAVA 374 (599)
Q Consensus 334 ~~G~TpLh~A--~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~ 374 (599)
..|+||||+| +..|+.+++++|+++|++++.+|..|.||++
T Consensus 119 ~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~ 161 (229)
T 2vge_A 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161 (229)
T ss_dssp STTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred CCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence 3555555555 5555555555555555554444444444443
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=7.2e-22 Score=192.91 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=112.1
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAAR 345 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~ 345 (599)
+..|.||||+|+..|+.++|++|++.| ++ |..|+||||+|+..|+.+++++||..+|+++|.+|..|+||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 678999999999999999999999999 54 47899999999999999999999999559999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccc
Q 007550 346 RKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNK 397 (599)
Q Consensus 346 ~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~ 397 (599)
.|+.+++++|+++|++++.+|.+|+||||+|+..|+.++++.+.+.|.....
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence 9999999999999999999999999999999999999999999999876543
No 93
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.85 E-value=1.8e-21 Score=172.25 Aligned_cols=114 Identities=25% Similarity=0.338 Sum_probs=98.6
Q ss_pred cCChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcc
Q 007550 44 NLSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGK 123 (599)
Q Consensus 44 ~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~ 123 (599)
..+.+.+.+++.+++.++ .+|||+|.++|+.|+|||+||++||+||++||.+++.|+ ....|.++++.
T Consensus 6 ~~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~------~~~~i~l~~~~---- 73 (120)
T 2if5_A 6 PDHSSDILSGLNEQRTQG--LLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD------QQNVYEIDFVS---- 73 (120)
T ss_dssp TTHHHHHHHHHHHHHHTT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----------CCSEEECCSSC----
T ss_pred cchHHHHHHHHHHHHhcC--CCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcccc------CCceEEeCCCC----
Confidence 357889999999999999 999999999999999999999999999999999999887 67889998854
Q ss_pred cCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhc
Q 007550 124 VGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRL 191 (599)
Q Consensus 124 i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l 191 (599)
+++|..+|+|+|||++.+.. +.+.+++.+|.+|+++.|++.|.+++
T Consensus 74 --~~~f~~ll~~~Yt~~~~~~~--------------------~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 74 --AEALTALMDFAYTATLTVST--------------------ANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp --HHHHHHHHHHHHHSCCCCCG--------------------GGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCCccCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 45999999999999997664 34689999999999999999998864
No 94
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=176.82 Aligned_cols=122 Identities=18% Similarity=0.308 Sum_probs=101.2
Q ss_pred CCCCCccCChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecc
Q 007550 38 LCSSLDNLSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTE 117 (599)
Q Consensus 38 ~~~~~~~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d 117 (599)
.....+..+.+.+.++|.+++.++ .+|||+|+++|+.|+|||+||++||+||++||.+++.+. .....+|.|++
T Consensus 22 ~~~~~~~~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~----e~~~~~I~l~~ 95 (144)
T 2ppi_A 22 SMAVSDPQHAARLLRALSSFREES--RFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD----DGSTYKIELEG 95 (144)
T ss_dssp CCCCCCTTHHHHHHHHHHHTTC----CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC---------CCCEEECCS
T ss_pred eeeecCcchHHHHHHHHHHHHhcC--CCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccc----cCCCcEEEeCC
Confidence 334445578889999999999999 999999999999999999999999999999999987652 11457899987
Q ss_pred cccCcccCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhc
Q 007550 118 LVPYGKVGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRL 191 (599)
Q Consensus 118 ~~~~~~i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l 191 (599)
+ ++++|..+|+|+|||++.+...+ +.+++.+|.+|+++.|++.|.+++
T Consensus 96 v------~~~~f~~lL~fiYtg~~~i~~~~--------------------v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 96 I------SVMVMREILDYIFSGQIRLNEDT--------------------IQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp S------CHHHHHHHHHHHTTSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred C------CHHHHHHHHHHHhCCCCCCCHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHh
Confidence 5 45599999999999999876533 589999999999999999999875
No 95
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.84 E-value=2.2e-21 Score=174.70 Aligned_cols=129 Identities=16% Similarity=0.055 Sum_probs=112.5
Q ss_pred ccccccCccchhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CCC--
Q 007550 223 VQRVVRSNLDDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NVT-- 299 (599)
Q Consensus 223 ~~~i~~~~~~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn-- 299 (599)
.++...+..+.++++.++..+. .++++.| +++|++++.. +..|+||||+|+. |+.+++++|+++| +++
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~-~~~v~~L----l~~g~~~~~~---~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~ 73 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQ-VETVRQL----LEAGADPNAL---NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA 73 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTC-HHHHHHH----HHTTCCTTCC---CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC
T ss_pred CCccCCCCCCccHHHHHHHcCC-HHHHHHH----HHcCCCcCCc---CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc
Confidence 3455666677777777777666 5666666 3468888877 8899999999999 9999999999999 554
Q ss_pred -CC-CchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 007550 300 -LD-DAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGAC 361 (599)
Q Consensus 300 -~~-g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad 361 (599)
.. |+||||+|+..|+.+++++|+..| ++++.+|..|+||||+|+..++.+++++|+++|||
T Consensus 74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 74 DPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 56 999999999999999999999998 99999999999999999999999999999999986
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=4.2e-21 Score=182.07 Aligned_cols=112 Identities=26% Similarity=0.333 Sum_probs=104.8
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcC-CCCChHHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKN-ARGHTVLHVAA 344 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d-~~G~TpLh~A~ 344 (599)
+..|.||||+|+..|+.++++.|++ | ++ |..|+||||+|+..|+.+++++|+..| +++|.++ ..|+||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHH
Confidence 5688999999999999999999999 7 54 478999999999999999999999998 9999998 89999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChh
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRK 383 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~ 383 (599)
..|+.+++++|+++|++++.+|.+|+||||+|+..++..
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~ 157 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 157 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTC
T ss_pred hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCc
Confidence 999999999999999999999999999999999875443
No 97
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.84 E-value=4.9e-21 Score=173.76 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=104.9
Q ss_pred ccCChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCc
Q 007550 43 DNLSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYG 122 (599)
Q Consensus 43 ~~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~ 122 (599)
...+.+.+.++|.+++.++ .+|||+|+++|+.|+|||+||++||+||++||.+++.+. .+|.+++
T Consensus 16 ~~~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--------~~i~l~~----- 80 (138)
T 2z8h_A 16 SSVHSTNVLLSLNDQRKKD--VLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--------LTVTLPE----- 80 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--------EEEECCT-----
T ss_pred CCchHHHHHHHHHHHHhhC--CCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--------ceEEeCC-----
Confidence 3467889999999999999 999999999999999999999999999999999988754 4777751
Q ss_pred ccCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhh
Q 007550 123 KVGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVE 196 (599)
Q Consensus 123 ~i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~ 196 (599)
++++++|..+|+|+|||++.+...+ +.+++.+|.+|+++.|++.|.+++...+.
T Consensus 81 ~v~~~~~~~lL~~~Ytg~~~i~~~~--------------------v~~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 81 EVTVKGFEPLIQFAYTAKLILSKDN--------------------VDEVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp TSCHHHHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred CCCHHHHHHHHHHhcCCCcccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 2566699999999999999877544 58999999999999999999999887655
No 98
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.83 E-value=1.3e-20 Score=168.36 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=102.4
Q ss_pred cCChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeee-cccccCc
Q 007550 44 NLSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLM-TELVPYG 122 (599)
Q Consensus 44 ~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l-~d~~~~~ 122 (599)
..+.+.+.++|.+++.++ .+|||+|+++|+.|+|||+||++||+||++||.+++.| ....|.| ++
T Consensus 10 ~~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-------~~~~i~l~~~----- 75 (127)
T 1r29_A 10 TRHASDVLLNLNRLRSRD--ILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-------NLSVINLDPE----- 75 (127)
T ss_dssp TTHHHHHHHHHHHHHHTT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-------TCSEEECCTT-----
T ss_pred hhHHHHHHHHHHHHHhcC--CCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-------CCCEEEeCCC-----
Confidence 457889999999999999 99999999999999999999999999999999998875 3468889 66
Q ss_pred ccCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchh
Q 007550 123 KVGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLN 193 (599)
Q Consensus 123 ~i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~ 193 (599)
+++++|..+|+|+|||++.+.+.+ +.+++.+|.+|+++.|++.|.+++..
T Consensus 76 -~~~~~f~~ll~~~Ytg~~~~~~~~--------------------~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 76 -INPEGFNILLDFMYTSRLNLREGN--------------------IMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp -SCHHHHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHcCCCcCcCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455599999999999999876533 58999999999999999999988754
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=7.2e-21 Score=189.29 Aligned_cols=109 Identities=27% Similarity=0.334 Sum_probs=102.6
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcC-CCCChHHHHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKN-ARGHTVLHVAA 344 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d-~~G~TpLh~A~ 344 (599)
+..|.||||+|+..|+.++|++|++ | ++ |..|+||||+|+..|+.+++++||.+| +++|.++ ..|+||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHH
Confidence 5678999999999999999999999 7 55 478999999999999999999999998 9999998 78999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMT 380 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g 380 (599)
..|+.+++++|+++|++++.+|..|+||||+|+..+
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 155 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVEDERGLTALELAREIL 155 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999743
No 100
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=166.90 Aligned_cols=111 Identities=23% Similarity=0.362 Sum_probs=98.2
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCccc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i 124 (599)
.+.+.+.++|.+++.++ .+|||+|.++|++|+|||+||++||+||++||.+++ ..+|.|+++.|.
T Consensus 6 ~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----------~~~i~l~~~~~~--- 70 (119)
T 3b84_A 6 QHSVRVLQELNKQREKG--QYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----------GGSVVLPAGFAE--- 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----------CCCEEECGGGHH---
T ss_pred hHHHHHHHHHHHHHhcC--CCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----------CCeEEeCCCCHH---
Confidence 46788999999999999 999999999999999999999999999999999865 247888886555
Q ss_pred CHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchh
Q 007550 125 GYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLN 193 (599)
Q Consensus 125 ~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~ 193 (599)
+|+.+|+|+|||++.+.+.+ +.+++.+|.+|+++.|++.|.+++..
T Consensus 71 ---~f~~ll~~iYtg~~~~~~~~--------------------v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 71 ---IFGLLLDFFYTGHLALTSGN--------------------RDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp ---HHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred ---HHHHHHHHHcCCCCccCHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999999999876544 58999999999999999999998764
No 101
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=5.3e-20 Score=154.30 Aligned_cols=92 Identities=30% Similarity=0.369 Sum_probs=77.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 007550 301 DDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMT 380 (599)
Q Consensus 301 ~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g 380 (599)
+|+||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 4788888888888888888888887 888888888888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHhcCC
Q 007550 381 RRKDYIEATKQGQ 393 (599)
Q Consensus 381 ~~~~i~~l~~~G~ 393 (599)
+.++++.|++.|+
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 8888888888876
No 102
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.82 E-value=1.2e-20 Score=170.43 Aligned_cols=115 Identities=22% Similarity=0.327 Sum_probs=97.4
Q ss_pred cCChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcc
Q 007550 44 NLSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGK 123 (599)
Q Consensus 44 ~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~ 123 (599)
..+...+.++|.+++.++ .+|||+|+++|++|+|||+||++||+||++||.+++ ..+|.|+++.+.
T Consensus 6 ~~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----------~~~i~l~~~~~~-- 71 (135)
T 2yy9_A 6 SGHSVRVLQELNKQREKG--QYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----------GGSVVLPAGFAE-- 71 (135)
T ss_dssp -CHHHHHHHHHHHHHHTT--TTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------------CCEEECGGGHH--
T ss_pred ccHHHHHHHHHHHHHhcC--CCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----------CCeEEeCCCCHH--
Confidence 457889999999999999 999999999999999999999999999999998865 236888885555
Q ss_pred cCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhh
Q 007550 124 VGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVE 196 (599)
Q Consensus 124 i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~ 196 (599)
+|+.+|+|+|||++.+...+ +.+++.+|.+|+++.|++.|.+++.....
T Consensus 72 ----~f~~lL~fiYtg~~~i~~~~--------------------v~~ll~~A~~l~i~~L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 72 ----IFGLLLDFFYTGHLALTSGN--------------------RDQVLLAAKELRVPEAVELCQSFQPQTSV 120 (135)
T ss_dssp ----HHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHCCC----
T ss_pred ----HHHHHHHHHhCCCCCCCHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 99999999999999876544 58999999999999999999999877554
No 103
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.82 E-value=8.1e-21 Score=181.27 Aligned_cols=126 Identities=15% Similarity=0.062 Sum_probs=112.1
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCC--CCC-CCCchHHHHHHHcCCH----HHHHHHHHcCCCCccCcCCCCChHHHHHHH
Q 007550 273 RVRRIHKALDSDDVELLKLLLDES--NVT-LDDAYALHYAAAYCNP----KVFKEVLNMGLADLNLKNARGHTVLHVAAR 345 (599)
Q Consensus 273 g~tpLh~A~~~g~~e~v~~LL~~g--~vn-~~g~tpLh~Aa~~g~~----~~v~~LL~~g~advn~~d~~G~TpLh~A~~ 345 (599)
++++||.|+..|+.+.++.++..+ ..+ ..|+||||+|+.+|+. +++++||..| ||||.+|..|+||||+|+.
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG-ADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT-CCSSCCCTTCCCTHHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHH
Confidence 568999999999999999999988 233 5699999999999975 4899999998 9999999999999999999
Q ss_pred cCC------HHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCC-----hhHHHHHHh-cCCCccccc
Q 007550 346 RKE------PAVLVTLLSKGACASETTSDGQ-TAVAICRRMTR-----RKDYIEATK-QGQETNKDR 399 (599)
Q Consensus 346 ~~~------~~iv~~LL~~Gad~~~~d~~G~-TpL~~A~~~g~-----~~~i~~l~~-~G~~~~~~~ 399 (599)
.++ .+++++||++||++|.+|..|+ ||||+|+..+. ..++++|++ .|++++...
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 987 5889999999999999999999 99999999554 458889999 898877544
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=9.4e-20 Score=185.09 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=116.7
Q ss_pred ccCCcHHHHHHhcCCHHHHHHHHhCC-CC---------CCCCchHHHHHHHc---CCHHHHHHHHHcCCCCccCcCCCCC
Q 007550 271 AKRVRRIHKALDSDDVELLKLLLDES-NV---------TLDDAYALHYAAAY---CNPKVFKEVLNMGLADLNLKNARGH 337 (599)
Q Consensus 271 ~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---------n~~g~tpLh~Aa~~---g~~~~v~~LL~~g~advn~~d~~G~ 337 (599)
....++|+.|+..|+.+.++.++..| ++ +..|+||||+|+.. |+.+++++||..| +++|.+|..|+
T Consensus 128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~ 206 (278)
T 1dcq_A 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCC
T ss_pred chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCC
Confidence 34568999999999999999999999 53 46799999999999 8999999999998 99999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCcc
Q 007550 338 TVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETN 396 (599)
Q Consensus 338 TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~ 396 (599)
||||+|+..|+.+++++||++||+++.+|.+|+||||+|+..|+.+++++|++.|+...
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999987543
No 105
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.81 E-value=2.4e-20 Score=165.26 Aligned_cols=111 Identities=23% Similarity=0.369 Sum_probs=98.5
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCccc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i 124 (599)
.+.+.+.+++.+++.++ .+|||+|.++|+.|+|||+||++||+||++||.++ ..+|.++++
T Consensus 10 ~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----------~~~i~l~~~------ 70 (121)
T 1buo_A 10 SHPTGLLCKANQMRLAG--TLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----------SQHYTLDFL------ 70 (121)
T ss_dssp THHHHHHHHHHHHHHHT--TTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----------CSEEEECSS------
T ss_pred chHHHHHHHHHHHHhcC--CCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----------CcEEEeCCC------
Confidence 57789999999999999 99999999999999999999999999999999862 347888875
Q ss_pred CHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhh
Q 007550 125 GYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNF 194 (599)
Q Consensus 125 ~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~ 194 (599)
++++|..+|+|+|||++.+.+ +.+.+++.+|.+|+++.+++.|.+++...
T Consensus 71 ~~~~f~~ll~~~Ytg~~~~~~--------------------~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 71 SPKTFQQILEYAYTATLQAKA--------------------EDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CHHHHHHHHHHHHHSCCCCCG--------------------GGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcCCCcCCCH--------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 455999999999999997764 34689999999999999999999987653
No 106
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.81 E-value=4e-20 Score=162.49 Aligned_cols=110 Identities=20% Similarity=0.322 Sum_probs=96.4
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeec--ccccCc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMT--ELVPYG 122 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~--d~~~~~ 122 (599)
.+.+.+.++|.+++.++ .+|||+|+++|+.|+|||+||++||+||++||.++ . ...|.|+ +
T Consensus 4 ~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-~---------~~~i~l~~~~----- 66 (116)
T 2vpk_A 4 HHCEHLLERLNKQREAG--FLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST-S---------ENNVFLDQSQ----- 66 (116)
T ss_dssp HHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC-C---------CSCEECCTTT-----
T ss_pred hHHHHHHHHHHHHHhcC--CCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC-C---------CCeEEeecCC-----
Confidence 36788999999999999 99999999999999999999999999999999876 1 2356666 6
Q ss_pred ccCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhch
Q 007550 123 KVGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLL 192 (599)
Q Consensus 123 ~i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~ 192 (599)
+++++|..+|+|+|||++.+.+.+ +.+++.+|.+|+++.|++.|.+++.
T Consensus 67 -~~~~~f~~ll~~~Yt~~~~~~~~~--------------------v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 67 -VKADGFQKLLEFIYTGTLNLDSWN--------------------VKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp -CCHHHHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHcCCCcccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 555699999999999999876543 5899999999999999999998764
No 107
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.81 E-value=2.2e-20 Score=164.94 Aligned_cols=109 Identities=20% Similarity=0.298 Sum_probs=96.6
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCccc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKV 124 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i 124 (599)
.+.+.+.++|.+++.++ .+|||+|+++|+.|+|||+||++||+||++||.++ ...|.+++ +
T Consensus 9 ~h~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----------~~~i~l~~------~ 69 (119)
T 2q81_A 9 QHSQHVLEQLNQQRQLG--LLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----------KDVVHLDI------S 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----------CSGGGGGG------C
T ss_pred hHHHHHHHHHHHHHhcC--CCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----------CCEEEeCC------C
Confidence 57789999999999999 99999999999999999999999999999999872 24677776 4
Q ss_pred CHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhch
Q 007550 125 GYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLL 192 (599)
Q Consensus 125 ~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~ 192 (599)
++++|..+|+|+|||++.+...+ +.+++.+|.+|+++.+++.|.+++.
T Consensus 70 ~~~~f~~ll~~~Ytg~~~i~~~~--------------------~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 70 NAAGLGQVLEFMYTAKLSLSPEN--------------------VDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 55599999999999999877544 5899999999999999999998753
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.3e-19 Score=199.15 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=114.0
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCC-CC---------CCCCchHHHHHHH---cCCHHHHHHHHHcCCCCccCcCCCCChHH
Q 007550 274 VRRIHKALDSDDVELLKLLLDES-NV---------TLDDAYALHYAAA---YCNPKVFKEVLNMGLADLNLKNARGHTVL 340 (599)
Q Consensus 274 ~tpLh~A~~~g~~e~v~~LL~~g-~v---------n~~g~tpLh~Aa~---~g~~~~v~~LL~~g~advn~~d~~G~TpL 340 (599)
.+.||.|+..|+.++|+.||+.| ++ +..|+||||+||. .|+.+++++||..| +|+|.+|..|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCCCCCcHH
Confidence 37899999999999999999999 55 4579999999977 89999999999998 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCccccc
Q 007550 341 HVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 341 h~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~~~ 399 (599)
|+|+..|+.+++++||++||+++.+|.+|+||||+|+..|+.+++++|++.|++++...
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~ 270 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 270 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999887543
No 109
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.80 E-value=1.6e-19 Score=162.41 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=101.8
Q ss_pred chhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHH
Q 007550 232 DDVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALH 307 (599)
Q Consensus 232 ~~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh 307 (599)
+.++++.|+..+. .+++++| +++|++++.. |..|.||||+|+..|+.+++++|+++| ++ |..|+||||
T Consensus 14 ~~t~l~~A~~~g~-~~~v~~L----l~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 14 LGKKLLEAARAGQ-DDEVRIL----MANGADVNAK---DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp HHHHHHHHHHHTC-HHHHHHH----HHTTCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred ccHHHHHHHHhCC-HHHHHHH----HHcCCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 4444555544444 4555555 3457888877 889999999999999999999999999 54 478999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 007550 308 YAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKG 359 (599)
Q Consensus 308 ~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~G 359 (599)
+|+..|+.+++++|+.+| ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 86 ~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999997 999999999999999999999999999999987
No 110
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.80 E-value=2e-19 Score=158.13 Aligned_cols=120 Identities=31% Similarity=0.364 Sum_probs=102.4
Q ss_pred hhhhhhccCcccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHH
Q 007550 233 DVCLEKELPDEVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHY 308 (599)
Q Consensus 233 ~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~ 308 (599)
.++++.++..+. .++++.| +++|++++.. +..|.||||+|+..|+.+++++|++.| ++ |..|.||||+
T Consensus 3 ~t~L~~A~~~~~-~~~v~~L----l~~~~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 3 RTPLHLAARNGH-LEVVKLL----LEAGADVNAK---DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 74 (126)
T ss_dssp CCHHHHHHHHTC-HHHHHHH----HHHTCCTTCC---CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccHHHHHHHcCc-HHHHHHH----HHcCCCCCCc---CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHH
Confidence 344444444444 4455555 3457777776 889999999999999999999999999 54 4789999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 007550 309 AAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGAC 361 (599)
Q Consensus 309 Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad 361 (599)
|+..|+.+++++|+..| ++++.+|..|.||||+|+..|+.+++++|+++|||
T Consensus 75 A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999998 99999999999999999999999999999999986
No 111
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=160.52 Aligned_cols=102 Identities=19% Similarity=0.342 Sum_probs=86.0
Q ss_pred HHcCCCCCcCCcEEEECC----eeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHh
Q 007550 57 LLLDAEHDYTDADIVVEG----KSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVI 132 (599)
Q Consensus 57 l~~~~~~~~sDv~i~v~g----~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~l 132 (599)
|++++ .+|||+|+++| +.|+|||+||++||+||++||.++|.|+ . .+|.++++.|. +|..+
T Consensus 2 l~~~~--~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~------~-~~i~l~~~~~~------~f~~~ 66 (109)
T 2vkp_A 2 MFNNE--LMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV------K-SEIHIPDVEPA------AFLIL 66 (109)
T ss_dssp CTTCC--TTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------------C-CEEEETTSCHH------HHHHH
T ss_pred cccCC--CcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC------C-CeEEeCCCCHH------HHHHH
Confidence 56778 89999999998 8999999999999999999999999887 5 78999885555 99999
Q ss_pred hhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchh
Q 007550 133 LYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLN 193 (599)
Q Consensus 133 L~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~ 193 (599)
|+|+|||++.+.+.+ +.+++.+|.+|+++.|++.|.+++..
T Consensus 67 l~~iYt~~~~~~~~~--------------------~~~ll~~A~~~~~~~L~~~c~~~l~~ 107 (109)
T 2vkp_A 67 LKYMYSDEIDLEADT--------------------VLATLYAAKKYIVPALAKACVNFLET 107 (109)
T ss_dssp HHHHHHCCCCCCTTT--------------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCccCCHHH--------------------HHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 999999999877544 58999999999999999999998765
No 112
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2.4e-19 Score=150.30 Aligned_cols=89 Identities=36% Similarity=0.472 Sum_probs=83.6
Q ss_pred cCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcC
Q 007550 272 KRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRK 347 (599)
Q Consensus 272 ~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~ 347 (599)
+|+||||+|+..|+.+++++|++.| ++ |..|+||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcC
Confidence 4899999999999999999999999 55 478999999999999999999999998 999999999999999999999
Q ss_pred CHHHHHHHHhCCCC
Q 007550 348 EPAVLVTLLSKGAC 361 (599)
Q Consensus 348 ~~~iv~~LL~~Gad 361 (599)
+.+++++|+++||+
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999986
No 113
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.80 E-value=5.9e-21 Score=202.07 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=107.6
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCC-C-----CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccC--cCCCCChHHH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDES-N-----VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNL--KNARGHTVLH 341 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g-~-----vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~--~d~~G~TpLh 341 (599)
+..|.||||+|+..|+.++|++|+++| + ++..++||||+||..|+.+++++|+.+| ++++. .|..|+||||
T Consensus 125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~TpL~ 203 (376)
T 2aja_A 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFR 203 (376)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHcC-CccchhccCCCCCCHHH
Confidence 667889999999999999999999999 4 3333499999999999999999999998 99988 8899999999
Q ss_pred HHH-HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCCCc
Q 007550 342 VAA-RRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQET 395 (599)
Q Consensus 342 ~A~-~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~~~ 395 (599)
+|+ .+|+.++|++|+++|++ |.||||+|+..|+.+++++|.+.|.+.
T Consensus 204 ~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~ 251 (376)
T 2aja_A 204 WAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRL 251 (376)
T ss_dssp HHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence 999 99999999999998853 899999999999999999999988654
No 114
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.80 E-value=5.2e-20 Score=189.15 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=106.1
Q ss_pred hhhhhccCcccHHHHHHHHhhhcccccccccccC---CCCccCCcHHHHHHhc---CCHHHHHHHHhCC-CC---CCCCc
Q 007550 234 VCLEKELPDEVSGEIKSLRVKSDEECEANIAEVD---PMHAKRVRRIHKALDS---DDVELLKLLLDES-NV---TLDDA 303 (599)
Q Consensus 234 t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~~d---~~d~~g~tpLh~A~~~---g~~e~v~~LL~~g-~v---n~~g~ 303 (599)
.+++.++..+....+..++ ..|++++... ..+..|.||||+|+.. |+.+++++||++| ++ |..|+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll-----~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAF-----ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHH-----HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred HHHhhhhhccCHHHHHHHH-----hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 3344444444433333333 3566666510 0278999999999997 8999999999999 55 47899
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCh
Q 007550 304 YALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRR 382 (599)
Q Consensus 304 tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~ 382 (599)
||||+|+..|+.+++++||..| ++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred CHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 9999999999999999999997 99999999999999999999999999999999987 589999999998864
No 115
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.80 E-value=8.6e-21 Score=169.08 Aligned_cols=112 Identities=22% Similarity=0.275 Sum_probs=98.2
Q ss_pred cCChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcc
Q 007550 44 NLSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGK 123 (599)
Q Consensus 44 ~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~ 123 (599)
..+.+.+.+.|.+++.++ .+|||+|+++|+.|+|||+||++||+||++||.+.+.+. ..|.+++ .
T Consensus 13 ~~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--------~~i~l~~-----~ 77 (125)
T 3ohu_A 13 TVHCTNILLGLNDQRKKD--ILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKND--------LVVSLPE-----E 77 (125)
T ss_dssp SSHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSS--------CEEECCT-----T
T ss_pred HHHHHHHHHHHHHHHhcC--CccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCC--------cEEEeCC-----C
Confidence 467889999999999999 999999999999999999999999999999999887643 5788886 2
Q ss_pred cCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHh
Q 007550 124 VGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRR 190 (599)
Q Consensus 124 i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~ 190 (599)
+++++|+.+|+|+|||++.+...+ +.+++.+|..|+++.|++.|.++
T Consensus 78 ~~~~~f~~~l~~iYtg~~~~~~~~--------------------v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 78 VTARGFGPLLQFAYTAKLLLSREN--------------------IREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp CCHHHHHHHHHHHTTSEEEECTTT--------------------HHHHHHHHHHHTBSSCTTSSCCC
T ss_pred CCHHHHHHHHHhHcCCceEECHHH--------------------HHHHHHHHHHhCCHHHHHHHHHh
Confidence 455599999999999999876544 58999999999999998888664
No 116
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=2.2e-19 Score=189.43 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=115.8
Q ss_pred CccCCcHHHHHHhc-CCHHHHHHHHhCC-CCC-----CCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHH
Q 007550 270 HAKRVRRIHKALDS-DDVELLKLLLDES-NVT-----LDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHV 342 (599)
Q Consensus 270 d~~g~tpLh~A~~~-g~~e~v~~LL~~g-~vn-----~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~ 342 (599)
+..+.|+||+|+.. |+.++++.||++| ++| ..|.||||+|+..|+.+++++||.+| +++|.+|..|+||||+
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh~ 274 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHH 274 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHH
Confidence 44567999999999 9999999999999 554 67999999999999999999999997 9999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 343 AARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 343 A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
|+..|+.+++++||++||+++.+|.+|+||||+|+..|+.+++++|...|.
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999998874
No 117
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.79 E-value=1e-20 Score=168.36 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=96.5
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeec-ccccCcc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMT-ELVPYGK 123 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~-d~~~~~~ 123 (599)
.+.+.+.++|.+++.++ .+|||+|+++|+.|+|||+|||+||+||++||.+++.++ .+|.++ +
T Consensus 11 ~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--------~~i~l~~~------ 74 (124)
T 2ihc_A 11 VHSTNVLLSLNDQRKKD--VLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--------LNITLPEE------ 74 (124)
T ss_dssp SHHHHHHHHHHHHHHHT--CSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--------EEEECCTT------
T ss_pred chHHHHHHHHHHHHhcC--CCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--------ceEeecCC------
Confidence 57789999999999999 999999999999999999999999999999999988754 467774 4
Q ss_pred cCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhc
Q 007550 124 VGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRL 191 (599)
Q Consensus 124 i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l 191 (599)
+++++|..+|+|+|||++.+.+.+ +.+++.+|.+|+++.|++.|.+++
T Consensus 75 v~~~~f~~lL~~iYtg~~~i~~~~--------------------v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 75 VTVKGFEPLIQFAYTAKLILSKEN--------------------VDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp SCHHHHHHHHHHHHHSEEEEETTT--------------------HHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred cCHHHHHHHHHHhcCCCcccCHHH--------------------HHHHHHHHHHHCCHHHHHHHHHHH
Confidence 566699999999999999776533 589999999999999999998765
No 118
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=182.82 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=113.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCC-CC---------CCCCchHHHHHHHc---CCHHHHHHHHHcCCCCccCcCCCCChH
Q 007550 273 RVRRIHKALDSDDVELLKLLLDES-NV---------TLDDAYALHYAAAY---CNPKVFKEVLNMGLADLNLKNARGHTV 339 (599)
Q Consensus 273 g~tpLh~A~~~g~~e~v~~LL~~g-~v---------n~~g~tpLh~Aa~~---g~~~~v~~LL~~g~advn~~d~~G~Tp 339 (599)
+.++||.|+..|+.+.|+.|++.| ++ +..|+||||+|+.. |+.+++++||..| +++|.+|..|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCCCCCCCCCH
Confidence 457899999999999999999999 54 45899999999997 8999999999998 9999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhcCC
Q 007550 340 LHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRRMTRRKDYIEATKQGQ 393 (599)
Q Consensus 340 Lh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~~i~~l~~~G~ 393 (599)
||+|+..|+.+++++||++||+++.+|.+|+||||+|+..|+.+++++|++.|.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998765
No 119
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=9.3e-20 Score=158.79 Aligned_cols=104 Identities=25% Similarity=0.304 Sum_probs=95.3
Q ss_pred CCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHH
Q 007550 269 MHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAA 344 (599)
Q Consensus 269 ~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~ 344 (599)
.|.+|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++|+..| ++++.+|..|+||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHH
Confidence 4889999999999999999999999999 54 478999999999999999999999997 999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 007550 345 RRKEPAVLVTLLSKGACASETTSDGQTAV 373 (599)
Q Consensus 345 ~~~~~~iv~~LL~~Gad~~~~d~~G~TpL 373 (599)
..++.+++++|+++||++|.++..|.||-
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999884
No 120
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.77 E-value=3.9e-19 Score=156.19 Aligned_cols=103 Identities=24% Similarity=0.351 Sum_probs=90.4
Q ss_pred cCChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcc
Q 007550 44 NLSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGK 123 (599)
Q Consensus 44 ~~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~ 123 (599)
..+.+.+.+.+.+++.++ .+|||+|.++|+.|+|||+|||+||+||++||.++ ...|.++++.|
T Consensus 12 ~~~~~~l~~~l~~~~~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----------~~~i~l~~~~~--- 75 (116)
T 3fkc_A 12 IQYSGSLLNSLNEQRGHG--LFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----------GQVVELSFIRA--- 75 (116)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----------CSEEEECSSCH---
T ss_pred ccHHHHHHHHHHHHHhcC--CceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----------CCEEEeCCCCH---
Confidence 346789999999999999 99999999999999999999999999999999874 34788887554
Q ss_pred cCHHHHHHhhhhhccCCC-CCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHH
Q 007550 124 VGYEAFNVILYYFYTGKL-KPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVL 185 (599)
Q Consensus 124 i~~~~f~~lL~ylYtg~l-~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~ 185 (599)
++|..+|+|+|||++ .+. .+.+.+++.+|.+|+++.|.+
T Consensus 76 ---~~f~~~l~~~Ytg~~~~~~--------------------~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 76 ---EIFAEILNYIYSSKIVRVR--------------------SDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp ---HHHHHHHHHHTTSCCCSCC--------------------HHHHHHHHHHHHHHTCHHHHT
T ss_pred ---HHHHHHHHhhcCCCcCCCC--------------------HHHHHHHHHHHHHhCccccCc
Confidence 599999999999998 444 366789999999999998864
No 121
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.77 E-value=1.5e-18 Score=155.93 Aligned_cols=101 Identities=20% Similarity=0.143 Sum_probs=96.0
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 007550 298 VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICR 377 (599)
Q Consensus 298 vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~ 377 (599)
.|.+|+||||+|+..|+.+++++||..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 4678999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHhcCCCccccc
Q 007550 378 RMTRRKDYIEATKQGQETNKDR 399 (599)
Q Consensus 378 ~~g~~~~i~~l~~~G~~~~~~~ 399 (599)
..|+.++++.|++.|.+++...
T Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~ 106 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASRNAVN 106 (137)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCC
T ss_pred HcCCHHHHHHHHHcCCCCCCCC
Confidence 9999999999999998776433
No 122
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.1e-19 Score=162.90 Aligned_cols=112 Identities=26% Similarity=0.408 Sum_probs=93.1
Q ss_pred CChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeec-ccccCcc
Q 007550 45 LSLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMT-ELVPYGK 123 (599)
Q Consensus 45 ~~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~-d~~~~~~ 123 (599)
.+.+.+.+.|.+++.++ .+|||+|.++|+.|+|||+||++||+||++||.++ ...+|.|+ +
T Consensus 15 ~~~~~l~~~l~~l~~~~--~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----------~~~~i~l~~~------ 76 (129)
T 3ga1_A 15 NFGNSILECLNEQRLQG--LYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----------RSAVVELPAA------ 76 (129)
T ss_dssp THHHHHHHHHHHHHHTT--CSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----------CCSEEECCTT------
T ss_pred cHHHHHHHHHHHHHhcC--CCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----------CCCEEEECCC------
Confidence 56788999999999999 99999999999999999999999999999999986 23578886 6
Q ss_pred cCHHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhh
Q 007550 124 VGYEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNF 194 (599)
Q Consensus 124 i~~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~ 194 (599)
+++++|..+|+|+|||++.+...+ +.+++.+|..|+++.+++.|.+++...
T Consensus 77 ~~~~~f~~ll~~iYtg~~~i~~~~--------------------~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 77 VQPQSFQQILSFCYTGRLSMNVGD--------------------QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp CCHHHHHHHHHHHHHSEEECCTTT--------------------HHHHHHHHHHTTBTTSSCC--------
T ss_pred CCHHHHHHHHHHHhCCccccCHHH--------------------HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 455599999999999999877544 589999999999999999999887653
No 123
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.75 E-value=6.9e-18 Score=148.81 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=92.2
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 007550 298 VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICR 377 (599)
Q Consensus 298 vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~ 377 (599)
.+..|.||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 3467899999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHhcCCCccc
Q 007550 378 RMTRRKDYIEATKQGQETNK 397 (599)
Q Consensus 378 ~~g~~~~i~~l~~~G~~~~~ 397 (599)
..|+.++++.|++.|.++..
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~ 101 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTV 101 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTC
T ss_pred HcCCHHHHHHHHHcCCCCCC
Confidence 99999999999999987654
No 124
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.75 E-value=7e-19 Score=171.62 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=86.2
Q ss_pred cccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhC-C-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCc
Q 007550 258 ECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDE-S-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLK 332 (599)
Q Consensus 258 ~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~-g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~ 332 (599)
++|++++.. |..|.||||+|+..|+.++|++|++. | ++ |..|+||||+|+..|+.+++++||..| ++++.+
T Consensus 94 ~~g~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~ 169 (222)
T 3ehr_A 94 DNRVGVNGL---DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLR 169 (222)
T ss_dssp HTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCC
T ss_pred hCCCCcccc---CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccc
Confidence 457788877 88999999999999999999999999 7 54 578999999999999999999999997 999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 007550 333 NARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQ 370 (599)
Q Consensus 333 d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~ 370 (599)
|..|+||||+|+..++.++++.|+..|++.+..+.+|+
T Consensus 170 ~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp CTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred cCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence 99999999999999999999999999999988776654
No 125
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.74 E-value=1.2e-19 Score=192.09 Aligned_cols=121 Identities=12% Similarity=-0.008 Sum_probs=106.3
Q ss_pred CccCCcHHHHHHhcCCHHHHHHHHhCCC-------CCCCCchHHHHHHHcCCHHHHHHHHHcCCCC---ccCcCCCCChH
Q 007550 270 HAKRVRRIHKALDSDDVELLKLLLDESN-------VTLDDAYALHYAAAYCNPKVFKEVLNMGLAD---LNLKNARGHTV 339 (599)
Q Consensus 270 d~~g~tpLh~A~~~g~~e~v~~LL~~g~-------vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~ad---vn~~d~~G~Tp 339 (599)
+.++.||||+|+..|+.++|++|+++|. +|..|.||||+||.+|+.+++++|+.+| ++ ++..+.+ +||
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~g-ad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA-PTEIMAMIQAEN-YHA 166 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC-TTTHHHHHSHHH-HHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCC-CCccccccCCCC-CCH
Confidence 3445699999999999999999999982 3457899999999999999999999998 76 2333333 999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCcHHHHHH-HcCChhHHHHHHhcC
Q 007550 340 LHVAARRKEPAVLVTLLSKGACASE--TTSDGQTAVAICR-RMTRRKDYIEATKQG 392 (599)
Q Consensus 340 Lh~A~~~~~~~iv~~LL~~Gad~~~--~d~~G~TpL~~A~-~~g~~~~i~~l~~~G 392 (599)
||+|+..|+.++|++|+++|++++. +|..|+||||+|+ ..|+.++++.|++.|
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g 222 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence 9999999999999999999999988 8999999999999 999999999999976
No 126
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=5.1e-18 Score=186.45 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=91.2
Q ss_pred cccccccc---CCCCccCCcHHHHHHh---cCCHHHHHHHHhCC-CCC---CCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q 007550 259 CEANIAEV---DPMHAKRVRRIHKALD---SDDVELLKLLLDES-NVT---LDDAYALHYAAAYCNPKVFKEVLNMGLAD 328 (599)
Q Consensus 259 ~Ga~in~~---d~~d~~g~tpLh~A~~---~g~~e~v~~LL~~g-~vn---~~g~tpLh~Aa~~g~~~~v~~LL~~g~ad 328 (599)
+|+++|.. ...+..|.||||+||. .|+.++|++||++| ++| .+|+||||+|+.+|+.+++++||.+| ||
T Consensus 154 ~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~ 232 (497)
T 3lvq_E 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-AL 232 (497)
T ss_dssp TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTC-CC
T ss_pred hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 46666544 1227789999999966 89999999999999 654 78999999999999999999999998 99
Q ss_pred ccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 007550 329 LNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICRR 378 (599)
Q Consensus 329 vn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~~ 378 (599)
+|.+|..|+||||+|+..|+.+++++|+++||+++. +|+|.+..
T Consensus 233 ~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 233 VGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 999999999999999999999999999999999987 56666654
No 127
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.73 E-value=3.9e-18 Score=148.41 Aligned_cols=100 Identities=27% Similarity=0.376 Sum_probs=95.9
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 007550 298 VTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAICR 377 (599)
Q Consensus 298 vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A~ 377 (599)
.|.+|+||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 4689999999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHhcCCCcccc
Q 007550 378 RMTRRKDYIEATKQGQETNKD 398 (599)
Q Consensus 378 ~~g~~~~i~~l~~~G~~~~~~ 398 (599)
..|+.++++.|++.|++++..
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~ 104 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNAR 104 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHH
T ss_pred HCCCHHHHHHHHHcCCCCCcC
Confidence 999999999999999987643
No 128
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.73 E-value=7.9e-19 Score=174.50 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=114.7
Q ss_pred ccCCcHHHHHHhcCCHHHHHHHHhCC-CCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCH
Q 007550 271 AKRVRRIHKALDSDDVELLKLLLDES-NVTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEP 349 (599)
Q Consensus 271 ~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~ 349 (599)
..+.+++..++..|+.+.+..+...+ +++..|.||||+|+..|+.++++.||. + +++|.+|..|+||||+|+..|+.
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~g~~ 90 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSD 90 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHHHTCH
T ss_pred CCCccHHHHHHHcCCCcccccccccccccccCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHHCCCH
Confidence 45667888888888888877777666 677899999999999999999999999 5 99999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCChhHHHHHHhcCCCccc
Q 007550 350 AVLVTLLSKGACASETT-SDGQTAVAICRRMTRRKDYIEATKQGQETNK 397 (599)
Q Consensus 350 ~iv~~LL~~Gad~~~~d-~~G~TpL~~A~~~g~~~~i~~l~~~G~~~~~ 397 (599)
+++++|+++|++++.++ ..|+||||+|+..|+.++++.|++.|++++.
T Consensus 91 ~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 139 (244)
T 3ui2_A 91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139 (244)
T ss_dssp HHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 99999999999999998 8899999999999999999999999988863
No 129
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.73 E-value=1.3e-17 Score=175.91 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=107.5
Q ss_pred ccchhhhhhccCc-ccHHHHHHHHhhhcccccccccccCCCCccCCcHHHHHHhcCCHHHHHHHHhCC-CCC---CCCch
Q 007550 230 NLDDVCLEKELPD-EVSGEIKSLRVKSDEECEANIAEVDPMHAKRVRRIHKALDSDDVELLKLLLDES-NVT---LDDAY 304 (599)
Q Consensus 230 ~~~~t~L~~al~~-~~~~eI~elL~~~~~~~Ga~in~~d~~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~vn---~~g~t 304 (599)
..+.++++.++.. +. .++++.| +.+|+++|..+. +..|.||||+|+..|+.++|++||++| ++| ..|+|
T Consensus 197 ~~~~t~L~~Aa~~~g~-~~~v~~L----L~~Gadvn~~~~-~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~T 270 (368)
T 3jue_A 197 LHPGALLFRASGHPPS-LPTMADA----LAHGADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRG 270 (368)
T ss_dssp CCHHHHHHHHTSSSCC-HHHHHHH----HHTTCCTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCcHHHHHHHccCC-HHHHHHH----HHcCCCCCcccc-ccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 3456788888887 77 4555555 357899998732 389999999999999999999999999 654 78999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHHcC
Q 007550 305 ALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKG---ACASETTSDGQTAVAICRRMT 380 (599)
Q Consensus 305 pLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~G---ad~~~~d~~G~TpL~~A~~~g 380 (599)
|||+|+..|+.+++++||..| +++|.+|..|+||||+|+..++.+++++|+..| ++....+..+.|+++++....
T Consensus 271 pLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 271 PLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999998 999999999999999999999999999999765 455566788899999988764
No 130
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=2.1e-17 Score=143.11 Aligned_cols=91 Identities=26% Similarity=0.203 Sum_probs=81.5
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 007550 297 NVTLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETTSDGQTAVAIC 376 (599)
Q Consensus 297 ~vn~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d~~G~TpL~~A 376 (599)
+++.+|.||||+|+..|+.+++++|+..| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 45688999999999999999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHH
Q 007550 377 RRMTRRKDYIEA 388 (599)
Q Consensus 377 ~~~g~~~~i~~l 388 (599)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999888765
No 131
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.71 E-value=3.8e-17 Score=165.84 Aligned_cols=124 Identities=21% Similarity=0.204 Sum_probs=104.7
Q ss_pred hhhhhhccCcccHHHHHHHHhhhcccccccccc---cCCCCccCCcHHHHHHhc---CCHHHHHHHHhCC-CC---CCCC
Q 007550 233 DVCLEKELPDEVSGEIKSLRVKSDEECEANIAE---VDPMHAKRVRRIHKALDS---DDVELLKLLLDES-NV---TLDD 302 (599)
Q Consensus 233 ~t~L~~al~~~~~~eI~elL~~~~~~~Ga~in~---~d~~d~~g~tpLh~A~~~---g~~e~v~~LL~~g-~v---n~~g 302 (599)
..+++.++..+....+..++ ..|++++. .+..+..|.||||+|+.. |+.+++++|+++| ++ |..|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll-----~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g 205 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAY-----ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----HTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC
T ss_pred hhhhhhHhhhcccHHHHHHH-----HhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCC
Confidence 45566666666655554444 35677543 233478899999999999 8999999999999 65 4789
Q ss_pred chHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCC
Q 007550 303 AYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACA 362 (599)
Q Consensus 303 ~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~ 362 (599)
+||||+|+..|+.+++++||..| +++|.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999987 999999999999999999999999999999999864
No 132
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.71 E-value=4.7e-18 Score=149.93 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHcCCCCCcCCcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccC
Q 007550 46 SLSKLSSNLEKLLLDAEHDYTDADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVG 125 (599)
Q Consensus 46 ~~~~L~~~l~~l~~~~~~~~sDv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~ 125 (599)
+...+.+.|. +.++ .||||+|+|+|+.|+|||+|||++|+||++ ....|.++++ +
T Consensus 15 ~~~~~l~~l~--r~~~--~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------------~~~~i~l~~v------~ 69 (119)
T 3m5b_A 15 GSDRLVQLAA--RLRP--ALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------------RGQWALGEGI------S 69 (119)
T ss_dssp TTCHHHHHHH--HHTT--TTCCEEEEETTEEEEECHHHHHTTCGGGCC---------------CEEEECCSSC------C
T ss_pred chHHHHHHHH--HhcC--CCcceEEEECCEEEeeEHHHHHHcCHHHhc---------------CCCEEEeCCC------C
Confidence 4456777765 4567 899999999999999999999999999973 1246777774 5
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchh
Q 007550 126 YEAFNVILYYFYTGKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLN 193 (599)
Q Consensus 126 ~~~f~~lL~ylYtg~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~ 193 (599)
+++|..+|+|+|||++.+.. +.+.++|.+|..|+++.+++.|.+...+
T Consensus 70 ~~~f~~ll~fiYtg~~~i~~--------------------~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 70 PSTFAQLLNFVYGESVELQP--------------------GELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHHHHHTTCCEEECG--------------------GGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCcCcCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 55999999999999997764 3468999999999999999999987654
No 133
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.67 E-value=1.8e-16 Score=149.92 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=92.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHH
Q 007550 299 TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAARRKEPAVLVTLLSKGACASETT-SDGQTAVAICR 377 (599)
Q Consensus 299 n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~~~~~~~iv~~LL~~Gad~~~~d-~~G~TpL~~A~ 377 (599)
+..|.||||+|+..|+.++++.||. + +++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4578999999999999999999999 5 9999999999999999999999999999999999999998 89999999999
Q ss_pred HcCChhHHHHHHhcCCCccc
Q 007550 378 RMTRRKDYIEATKQGQETNK 397 (599)
Q Consensus 378 ~~g~~~~i~~l~~~G~~~~~ 397 (599)
..|+.++++.|++.|.+++.
T Consensus 119 ~~~~~~~v~~Ll~~ga~~~~ 138 (183)
T 3deo_A 119 GYVRPEVVEALVELGADIEV 138 (183)
T ss_dssp HTTCHHHHHHHHHHTCCTTC
T ss_pred hcCcHHHHHHHHHcCCCCcC
Confidence 99999999999999988764
No 134
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.63 E-value=7e-16 Score=133.47 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=80.3
Q ss_pred CCccCCcHHHHHHhcCCHHHHHHHHhCC-CC---CCCCchHHHHHHHcCCHHHHHHHHHcCCCCccCcCCCCChHHHHHH
Q 007550 269 MHAKRVRRIHKALDSDDVELLKLLLDES-NV---TLDDAYALHYAAAYCNPKVFKEVLNMGLADLNLKNARGHTVLHVAA 344 (599)
Q Consensus 269 ~d~~g~tpLh~A~~~g~~e~v~~LL~~g-~v---n~~g~tpLh~Aa~~g~~~~v~~LL~~g~advn~~d~~G~TpLh~A~ 344 (599)
.+.+|.||||+|+..|+.+++++|+++| ++ |..|+||||+|+..|+.+++++||..| +++|.+|..|+||||+|+
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHHHHH
Confidence 3889999999999999999999999999 54 478999999999999999999999997 999999999999999999
Q ss_pred HcCCHHHHHHH
Q 007550 345 RRKEPAVLVTL 355 (599)
Q Consensus 345 ~~~~~~iv~~L 355 (599)
..|+.+++++|
T Consensus 99 ~~~~~~~~~~L 109 (110)
T 2zgd_A 99 DNGNEDLAEIL 109 (110)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHh
Confidence 99999999987
No 135
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.89 E-value=3.5e-09 Score=97.69 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=78.7
Q ss_pred cEEEE-CCeeEeeeeeehhhcCHHHHHHHhc-CCC-CCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCC
Q 007550 68 ADIVV-EGKSVAVHRCILSARSQFFHELFKK-GND-NDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPS 144 (599)
Q Consensus 68 v~i~v-~g~~~~~Hr~ILaarS~~F~~lf~~-~~~-e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~ 144 (599)
|+|+. +|+.|.+||.+ |+.|+||++||.. ++. ++ ....|.|+++ +..++..|++|+|++.-...
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~------~~~~Ipl~~V------~~~iL~kViey~~~h~~~~~ 69 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEG------DDDPVPLPNV------NAAILKKVIQWCTHHKDDPP 69 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------------CEECTTS------CHHHHHHHHHHHHHTTTCCC
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccc------cCCCcCCCCc------cHHHHHHHHHHHHHcCcCCC
Confidence 56664 69999999998 9999999999987 555 44 4457888875 55599999999999874432
Q ss_pred CCCCcc----ccccCCCCcC--CCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhh
Q 007550 145 PSEVST----CVDDACAHDA--CPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVE 196 (599)
Q Consensus 145 ~~~v~~----c~d~~c~h~a--c~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~ 196 (599)
+..... ..++.+.-+. -.-..+.+.+|+.+|.++++..|+.+|.+++++.+.
T Consensus 70 ~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~ 127 (159)
T 2ast_A 70 PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 127 (159)
T ss_dssp -----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CcccccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 211000 0000000000 001247899999999999999999999999988766
No 136
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.56 E-value=7e-08 Score=81.20 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=57.8
Q ss_pred cEEEE-CCeeEeeeeeehhhcCHHHHHHHhc--CCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhc-----c-
Q 007550 68 ADIVV-EGKSVAVHRCILSARSQFFHELFKK--GNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFY-----T- 138 (599)
Q Consensus 68 v~i~v-~g~~~~~Hr~ILaarS~~F~~lf~~--~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylY-----t- 138 (599)
|+++. +|++|.|||.+ |+.|+||++||.. ++.|+ ....|.|+++.+. ++..+++|+| +
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~------~~~~I~l~~V~~~------iL~kViey~~~h~~~~~ 70 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN------ETNEVNFREIPSH------VLSKVCMYFTYKVRYTN 70 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------------CEEECTTSCHH------HHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCcccc------CCCceECCCCCHH------HHHHHHHHHHHhcccCC
Confidence 45554 59999999999 9999999999986 45554 4567888875555 9999999999 5
Q ss_pred --CCCCCCCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcC
Q 007550 139 --GKLKPSPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQ 179 (599)
Q Consensus 139 --g~l~~~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~ 179 (599)
+.++...-+ .+.+.+||.+|+.++
T Consensus 71 ~~~~i~~~~i~-----------------~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 71 SSTEIPEFPIA-----------------PEIALELLMAANFLD 96 (97)
T ss_dssp CCSCCCCCCCC-----------------GGGHHHHHHHHHHHT
T ss_pred CcCCCCcCcCC-----------------HHHHHHHHHHHhhhC
Confidence 444322111 256799999999876
No 137
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.25 E-value=3.1e-06 Score=76.18 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=76.1
Q ss_pred cEEEE-CCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCC
Q 007550 68 ADIVV-EGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPS 146 (599)
Q Consensus 68 v~i~v-~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~ 146 (599)
|+++. +|+.|.+||.+ |..|++|+.||.... . ..|.|++ |+..++..+++|+|+..-...+.
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~--------~~Ipl~~------V~~~iL~kVieyc~~h~~~~~~~ 66 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG--M--------DPVPLPN------VNAAILKKVIQWCTHHKDDPPPP 66 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC--C--------SSEECTT------CCHHHHHHHHHHHHHHTTCC---
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC--C--------CceecCC------cCHHHHHHHHHHHHHhccCCCcc
Confidence 56665 68999999998 899999999998631 1 2577776 55559999999999876432211
Q ss_pred CCccc----cccCCCCc--CCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhh
Q 007550 147 EVSTC----VDDACAHD--ACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVE 196 (599)
Q Consensus 147 ~v~~c----~d~~c~h~--ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~ 196 (599)
....+ .++...-+ -..-..+.+.+|+.+|.++++..|+.+|.++.++.+.
T Consensus 67 ~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 67 EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp --------------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred ccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 10000 00000000 0001247899999999999999999999999998776
No 138
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.00 E-value=1.2e-06 Score=80.63 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=49.5
Q ss_pred cEEEE-CCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCC
Q 007550 68 ADIVV-EGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPS 146 (599)
Q Consensus 68 v~i~v-~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~ 146 (599)
|+|+. +|+.|.+||.+ |..|++|+.||..... ...|.|++ |+..++..|++|+|+..-...+.
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~---------~~~Ipl~~------V~~~iL~kVieyc~~h~~~~~~~ 69 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCV---------DNGVPLPN------VTSKILAKVIEYCKRHVEAAASK 69 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------------CCTT------SCHHHHHHHHHC-----------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCC---------CCceeCCc------CcHHHHHHHHHHHHHcccCCCcc
Confidence 56664 69999999998 8999999999976422 13566666 56669999999999876432111
Q ss_pred CCc-----cccccCCCCcCC--CchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhh
Q 007550 147 EVS-----TCVDDACAHDAC--PPAINYAIELMYASAAFQMKELVLLFQRRLLNFVE 196 (599)
Q Consensus 147 ~v~-----~c~d~~c~h~ac--~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~ 196 (599)
... ...++...-+.. .-..+.+.+|+.+|.++++..|+.+|.++.++.+.
T Consensus 70 ~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 70 AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIK 126 (160)
T ss_dssp -------------------------------CHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred cccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 000 000000000000 01235788999999999999999999999998775
No 139
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.49 E-value=0.0003 Score=59.87 Aligned_cols=97 Identities=20% Similarity=0.331 Sum_probs=70.4
Q ss_pred cEEEECCeeEeeeeeehhhcC-HHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCC
Q 007550 68 ADIVVEGKSVAVHRCILSARS-QFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPS 146 (599)
Q Consensus 68 v~i~v~g~~~~~Hr~ILaarS-~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~ 146 (599)
|+|.|+|+.|...+..|+... .+|..||.+.+.-. ........+-+ |-+|. .|..||.|+.+|++..++
T Consensus 8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~--~~~d~~~~~fi-DRdp~------~F~~IL~~lr~g~l~~p~- 77 (107)
T 3drz_A 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLD--SDKDETGAYLI-DRDPT------YFGPVLNYLRHGKLVINK- 77 (107)
T ss_dssp EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGG--GGBCTTSCEEE-CSCHH------HHHHHHHHHHHSCCCCCT-
T ss_pred EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCC--cCCCCCceEEe-cCChH------HHHHHHHHhCCCeeCCCC-
Confidence 678899999999999998765 47888987643210 00112334544 44555 999999999999987643
Q ss_pred CCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhch
Q 007550 147 EVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLL 192 (599)
Q Consensus 147 ~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~ 192 (599)
++ | ...++.-|..|++.+|++.|.+...
T Consensus 78 ~~-------~-----------~~~l~~Ea~fy~l~~L~~~l~~~i~ 105 (107)
T 3drz_A 78 DL-------A-----------EEGVLEEAEFYNITSLIKLVKDKIR 105 (107)
T ss_dssp TS-------C-----------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CC-------C-----------HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 22 1 2568899999999999999987653
No 140
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=97.42 E-value=0.00036 Score=58.50 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=61.9
Q ss_pred cEEEE-CCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCC
Q 007550 68 ADIVV-EGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPS 146 (599)
Q Consensus 68 v~i~v-~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~ 146 (599)
|+++. +|..|.++|.+ |..|.+++.||..++ +. ....|.|+++ +..++..+++|+|...-...+.
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~------~~~~Iplp~V------~~~iL~kVieyc~~h~~~~~~~ 71 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RE------SKGRIELKQF------DSHILEKAVEYLNYNLKYSGVS 71 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TT------CTTEEEETTS------CHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-cc------CCCceecCCc------CHHHHHHHHHHHHHhcccCCCc
Confidence 56665 69999999996 899999999998755 33 3357888874 5559999999997644111000
Q ss_pred CCccccccCCCCcCCCchHHHHHHHHHHHHHcCh
Q 007550 147 EVSTCVDDACAHDACPPAINYAIELMYASAAFQM 180 (599)
Q Consensus 147 ~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i 180 (599)
.. .++...- .-..+.+.+|+.+|+++++
T Consensus 72 ~~---~~~i~~w---~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 72 ED---DDEIPEF---EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp SS---CSSCCCC---CCCHHHHHHHHHHHHHHCC
T ss_pred cc---cccCCCc---cCCHHHHHHHHHHHHHhCc
Confidence 00 0000000 1124789999999998764
No 141
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=97.03 E-value=0.00055 Score=56.99 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=57.4
Q ss_pred cEEEE-CCeeEeeeeeehhhcCHHHHHHHhcC-C-CCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCC-
Q 007550 68 ADIVV-EGKSVAVHRCILSARSQFFHELFKKG-N-DNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKP- 143 (599)
Q Consensus 68 v~i~v-~g~~~~~Hr~ILaarS~~F~~lf~~~-~-~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~- 143 (599)
|+++. +|.+|.++|.+ |..|.+++.|+... . .|+ ....|.|++ |+..++..+++|+|...-..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~------~~~~Ipl~~------V~~~iL~kVieyc~~h~~~~~ 69 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN------ETNEVNFRE------IPSHVLSKVCMYFTYKVRYTN 69 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------------CEEECSS------CCHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccc------cCCceeCCC------CCHHHHHHHHHHHHHccccCC
Confidence 45555 69999999996 89999999999862 2 333 335677776 55559999999997643110
Q ss_pred CCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcCh
Q 007550 144 SPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQM 180 (599)
Q Consensus 144 ~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i 180 (599)
...+.. .+ .-..+.+.+|+.+|+.+++
T Consensus 70 ~~~~i~-----~w-----~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 70 SSTEIP-----EF-----PIAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCSCCC-----CC-----CCCTTTHHHHHHHHHHHTC
T ss_pred CcccCC-----Cc-----ccCHHHHHHHHHHHHHhCc
Confidence 011100 00 0112568999999998764
No 142
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=96.97 E-value=0.0024 Score=58.93 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=74.1
Q ss_pred cEEEE-CCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCC
Q 007550 68 ADIVV-EGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPS 146 (599)
Q Consensus 68 v~i~v-~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~ 146 (599)
|+|+. +|..|.+++.+ |..|.+++.|+.....+. ........|.|++ |+..++..|++|+|..+-...+.
T Consensus 9 i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~--~~~~~~~~Iplpn------V~s~iL~kVieyc~~h~~~~~~~ 79 (169)
T 3v7d_A 9 VVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDD--DEDDDEIVMPVPN------VRSSVLQKVIEWAEHHRDSNFPD 79 (169)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-------------CEEECTT------CCHHHHHHHHHHHHHTTTCCCCC
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCccc--ccccCCCceeeCC------CCHHHHHHHHHHHHHcccCCCcc
Confidence 55554 49999999997 788999999998543210 0000225677776 55559999999997655433221
Q ss_pred CCc---cccccCCCCcC--CCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhh
Q 007550 147 EVS---TCVDDACAHDA--CPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVE 196 (599)
Q Consensus 147 ~v~---~c~d~~c~h~a--c~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~ 196 (599)
... ...++...-+. -.-..+.+.+|+.+|.++++..|+.++.+..++.+.
T Consensus 80 ~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 80 EDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp --------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 000 00000000000 001237889999999999999999999999888665
No 143
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.94 E-value=0.024 Score=53.24 Aligned_cols=101 Identities=19% Similarity=0.301 Sum_probs=72.9
Q ss_pred cEEEECCeeEeeeeeehhhcC-HHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCC
Q 007550 68 ADIVVEGKSVAVHRCILSARS-QFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPS 146 (599)
Q Consensus 68 v~i~v~g~~~~~Hr~ILaarS-~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~ 146 (599)
|+|-|||..|...+..|...- .+|..||.+.+.-. ........+-| |=+|. .|..||.|+.+|++..++
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~--~~~De~geyFI-DRDP~------~F~~ILnyLRtG~L~lP~- 83 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLD--SDKDETGAYLI-DRDPT------YFGPVLNYLRHGKLVINK- 83 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC------BCTTCCEEE-CSCST------THHHHHHHHHHSCCCCCT-
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccC--cccCCCccEEe-cCChH------HHHHHHHHhcCCccCCCC-
Confidence 567899999999999998654 37888987653210 01112345555 55777 999999999999987643
Q ss_pred CCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHHHHHHHhchhhhh
Q 007550 147 EVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELVLLFQRRLLNFVE 196 (599)
Q Consensus 147 ~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~~~~~~~l~~~~~ 196 (599)
++ | ...++.-|..|++..|++.|.+.+.....
T Consensus 84 ~~-------~-----------~~~l~eEA~FygL~~Lv~~l~~~i~ere~ 115 (202)
T 3drx_A 84 DL-------A-----------EEGVLEEAEFYNITSLIKLVKDKIRERDS 115 (202)
T ss_dssp TS-------C-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CC-------C-----------HHHHHHHHHHCCcHHHHHHHHHHHHHHhc
Confidence 32 1 24688999999999999999888765444
No 144
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=95.51 E-value=0.014 Score=49.83 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=57.6
Q ss_pred cEEE-ECCeeEeeeeeehhhcCHHHHHHHhcC--CCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCC-C
Q 007550 68 ADIV-VEGKSVAVHRCILSARSQFFHELFKKG--NDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLK-P 143 (599)
Q Consensus 68 v~i~-v~g~~~~~Hr~ILaarS~~F~~lf~~~--~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~-~ 143 (599)
|+++ .+|.+|.++|. .|..|..++.|+... +.+. ....|.|++ |+..++..+++|+|...-. .
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~------~~~~Iplpn------V~s~iL~kVieyc~~h~~~~~ 85 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAEN------ETNEVNFRE------IPSHVLSKVCMYFTYKVRYTN 85 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------------CEEECSS------CCHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccc------cCCceeCCC------CCHHHHHHHHHHHHHhhhccC
Confidence 5666 36999999998 578999999999753 2232 234677776 5555999999999654321 0
Q ss_pred CCCCCccccccCCCCcCCCchHHHHHHHHHHHHHcCh
Q 007550 144 SPSEVSTCVDDACAHDACPPAINYAIELMYASAAFQM 180 (599)
Q Consensus 144 ~~~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i 180 (599)
...++. .+ .-..+.+++|+.+|+++++
T Consensus 86 ~~~~i~-----~w-----~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 86 SSTEIP-----EF-----PIAPEIALELLMAANFLDC 112 (112)
T ss_dssp CSSCCC-----CC-----CCCHHHHHHHHHHHHHHTC
T ss_pred CcCCCC-----Cc-----ccCHHHHHHHHHHHHHhCc
Confidence 111110 00 1124789999999998764
No 145
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=89.21 E-value=0.3 Score=41.65 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=57.8
Q ss_pred cEEEECCeeEeeeeeehhhcCH-HHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCC
Q 007550 68 ADIVVEGKSVAVHRCILSARSQ-FFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPS 146 (599)
Q Consensus 68 v~i~v~g~~~~~Hr~ILaarS~-~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~ 146 (599)
|+|-|||..|...+..|...-. ++..||+.... ......++-+ |=+|. .|..||.|+.+|++..++
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~-----~~~~~g~~Fi-DRdp~------~F~~ILnylR~G~l~~p~- 73 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLN-----YDPVLNEYFF-DRHPG------VFAQIINYYRSGKLHYPT- 73 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTT-----EETTTTEEEE-CSCTT------THHHHHHHHHHSCBCCCS-
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCC-----CCCCCCcEEE-ecChH------HHHHHHHHhcCCCCCCCC-
Confidence 6788999999999999975532 34445543211 1113345555 45677 999999999999987653
Q ss_pred CCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHH
Q 007550 147 EVSTCVDDACAHDACPPAINYAIELMYASAAFQMKEL 183 (599)
Q Consensus 147 ~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L 183 (599)
+++ ...++.-|..|++.+.
T Consensus 74 ~~~------------------~~~~~~Ea~fy~i~~~ 92 (115)
T 3kvt_A 74 DVC------------------GPLFEEELEFWGLDSN 92 (115)
T ss_dssp SSC------------------HHHHHHHHHHHTCCGG
T ss_pred ccc------------------HHHHHHHHHHhCCChH
Confidence 221 2467888888988654
No 146
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=86.57 E-value=0.51 Score=39.12 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=56.8
Q ss_pred cEEEECCeeEeeeeeehhhcCH-HHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhcc-CCCCCCC
Q 007550 68 ADIVVEGKSVAVHRCILSARSQ-FFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYT-GKLKPSP 145 (599)
Q Consensus 68 v~i~v~g~~~~~Hr~ILaarS~-~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYt-g~l~~~~ 145 (599)
|+|-|+|..|...+..|..--. .+..|++.... ......++-+ |=+|. .|..||.|+-+ |++..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~-----~~~~~~eyFi-DRdp~------~F~~ILnflR~~G~l~~p~ 70 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRY-----YDPLRNEYFF-DRNRP------SFDAILYFYQSGGRLRRPV 70 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGG-----EETTTTEEEE-CSCST------THHHHHHHHHTTSCCCCCT
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccc-----cCCCceeEEE-cCChH------HHHHHHHHHhcCCcccCCC
Confidence 6788999999999999964311 23334432110 0112345655 45777 99999999998 8886543
Q ss_pred CCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHH
Q 007550 146 SEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELV 184 (599)
Q Consensus 146 ~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~ 184 (599)
+++ +..++.-|..|++.+++
T Consensus 71 -~~~------------------~~~~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 71 -NVP------------------LDVFSEEIKFYELGENA 90 (100)
T ss_dssp -TSC------------------HHHHHHHHHHTTCCHHH
T ss_pred -CCC------------------HHHHHHHHHHcCCCHHH
Confidence 321 35788999999997654
No 147
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=79.55 E-value=0.74 Score=39.77 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=55.5
Q ss_pred cEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCCC
Q 007550 68 ADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPSE 147 (599)
Q Consensus 68 v~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~~ 147 (599)
|+|-|||..|..-+..|...- ..||... +...........+-++ =+|. .|..||.|+-+|++..++ +
T Consensus 15 V~LNVGG~~F~t~~~TL~~~p---~S~L~~~--~~~~~~~~~~g~~FiD-Rdp~------~F~~ILnflR~G~l~~p~-~ 81 (124)
T 1s1g_A 15 IVLNVSGRRFQTWRTTLERYP---DTLLGST--EKEFFFNEDTKEYFFD-RDPE------VFRCVLNFYRTGKLHYPR-Y 81 (124)
T ss_dssp EEEEETTEEEEEEHHHHTTST---TSSTTSS--GGGGTBCSSSCSEEEC-SCHH------HHHHHHHHHHHSCBCCCT-T
T ss_pred EEEEeCCEEEEEeHHHHhcCC---Cceeccc--CCcccccCCCCcEEEc-CChH------HHHHHHHHHhcCCCCCCC-C
Confidence 778899999999999997532 2344331 0000011123345443 3444 999999999999987543 2
Q ss_pred CccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHH
Q 007550 148 VSTCVDDACAHDACPPAINYAIELMYASAAFQMKELV 184 (599)
Q Consensus 148 v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~ 184 (599)
+ | +..++.-|..|++..+.
T Consensus 82 ~-------~-----------~~~l~~Ea~fy~i~~l~ 100 (124)
T 1s1g_A 82 E-------C-----------ISAYDDELAFYGILPEI 100 (124)
T ss_dssp S-------C-----------HHHHHHHHHHTTCCGGG
T ss_pred c-------C-----------HHHHHHHHHHcCCChHH
Confidence 2 1 35788899999998763
No 148
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=73.68 E-value=1.4 Score=38.92 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=55.6
Q ss_pred CcEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCC
Q 007550 67 DADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPS 146 (599)
Q Consensus 67 Dv~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~ 146 (599)
=|+|-|||..|...+..|...- ..||...... .........+-++ =+|. .|..||.|+-+|++..++
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~~~~--~~~~~~~g~yFiD-Rdp~------~F~~ILnflR~G~l~~p~- 102 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKE--FFFNEDTKEYFFD-RDPE------VFRCVLNFYRTGKLHYPR- 102 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCT---TSTTTSGGGG--GSEETTTTEEEEC-SCHH------HHHHHHHHHHHSSBCCCT-
T ss_pred EEEEEECCEEEEeeHHHHhcCC---CeeecccCCc--ccccCCCCeEEEe-CCcH------HHHHHHHHHhcCCcCCCC-
Confidence 3778899999999999997532 2344431000 0011133455553 3444 999999999999987543
Q ss_pred CCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHH
Q 007550 147 EVSTCVDDACAHDACPPAINYAIELMYASAAFQMKEL 183 (599)
Q Consensus 147 ~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L 183 (599)
++ | +..++.-|..|++..+
T Consensus 103 ~~-------~-----------~~~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 103 YE-------C-----------ISAYDDELAFYGILPE 121 (140)
T ss_dssp TS-------C-----------HHHHHHHHHHHTCCGG
T ss_pred Cc-------C-----------HHHHHHHHHHcCCChH
Confidence 22 1 3568888999999776
No 149
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=66.05 E-value=2.7 Score=34.96 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=55.0
Q ss_pred cEEEECCeeEeeeeeehhhcCHHHHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhccCCCCCCCCC
Q 007550 68 ADIVVEGKSVAVHRCILSARSQFFHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYTGKLKPSPSE 147 (599)
Q Consensus 68 v~i~v~g~~~~~Hr~ILaarS~~F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYtg~l~~~~~~ 147 (599)
|+|-|||..|...+..|...-. +||... +...........+-+ |=+|. .|..||.|+-+|++..++ +
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~--~~~~~~~~~~~~~Fi-DRdp~------~F~~ILnflR~g~l~~p~-~ 68 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSS--ERDFFYHPETQQYFF-DRDPD------IFRHILNFYRTGKLHYPR-H 68 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSG--GGGGGEEGGGTEEEE-CSCTT------THHHHHHHHHHSCBCCCT-T
T ss_pred EEEEECCEEEEEeHHHHhcCCC---cccccc--CCcccccCCCCcEEE-eCCcH------HHHHHHHHHhcCCCCCCC-C
Confidence 6789999999999998875322 234331 100000112234544 34677 999999999999986543 2
Q ss_pred CccccccCCCCcCCCchHHHHHHHHHHHHHcChHHH
Q 007550 148 VSTCVDDACAHDACPPAINYAIELMYASAAFQMKEL 183 (599)
Q Consensus 148 v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L 183 (599)
+ | +..++.-|..|+++.+
T Consensus 69 ~-------~-----------~~~l~~Ea~fy~i~~l 86 (105)
T 1nn7_A 69 E-------C-----------ISAYDEELAFFGLIPE 86 (105)
T ss_dssp S-------C-----------HHHHHHHHHHHTCCSC
T ss_pred c-------C-----------HHHHHHHHHHcCCCHH
Confidence 2 1 3568888999999765
No 150
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.06 E-value=2.8 Score=34.71 Aligned_cols=52 Identities=10% Similarity=-0.075 Sum_probs=39.7
Q ss_pred cCCcHHHHHHHHhcChHHHHhccccccccCccchhhhhhccCcccHHHHHHHH
Q 007550 200 VEDVIPILVAAFHCQLNQLRSHCVQRVVRSNLDDVCLEKELPDEVSGEIKSLR 252 (599)
Q Consensus 200 ~~n~~t~L~~A~~~~~~~Ll~~~~~~i~~~~~~~t~L~~al~~~~~~eI~elL 252 (599)
.+||..++.+|..+++..|.+.|.+|+.+++.........+.... .++.++|
T Consensus 10 ~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~-~~L~~lL 61 (105)
T 2eqx_A 10 VGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPH-RLLTDII 61 (105)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCH-HHHHHHH
Confidence 789999999999999999999999999998776654443333333 5556666
No 151
>4a1q_A ORF E73; viral protein, extremophIle, archaea, ribbon-helix-helix Pro DNA-binding proteins; NMR {Sulfolobus virus ragged hills} PDB: 4aai_A
Probab=28.97 E-value=9.6 Score=27.54 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=7.8
Q ss_pred HhhCCccCCC
Q 007550 508 VETGRRYFPH 517 (599)
Q Consensus 508 ~~~~~~~f~~ 517 (599)
-|.|+||||-
T Consensus 63 ~ei~krffpa 72 (73)
T 4a1q_A 63 DEISKRFFPA 72 (73)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhccCC
Confidence 3778899984
No 152
>3gna_A RAG-1, V(D)J recombination-activating protein 1; DNA recombination, DNA-binding, endonucle hydrolase; 2.40A {Mus musculus} PDB: 3gnb_A
Probab=23.47 E-value=64 Score=24.83 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=19.1
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhHhhhh
Q 007550 544 QRLKRARFMELKEDVQKAFYKDMAEKN 570 (599)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (599)
++..|-|..|||-.| |+|.+ |||..
T Consensus 33 rraqkhrlrelk~qv-k~Fad-kEegG 57 (96)
T 3gna_A 33 RRAQKHRLRELKIQV-KEFAD-KEEGG 57 (96)
T ss_dssp HHHHHHHHHHHHHHH-HHHHH-HHSTT
T ss_pred HHHHHHHHHHHHHHH-HHHHh-HhhCC
Confidence 556688999999877 78986 67653
No 153
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.67 E-value=62 Score=21.42 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.7
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007550 277 IHKALDSDDVELLKLLL 293 (599)
Q Consensus 277 Lh~A~~~g~~e~v~~LL 293 (599)
+..||..|+++.+++|=
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 67899999999999884
No 154
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=20.36 E-value=55 Score=35.04 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=53.0
Q ss_pred cEEEECCeeEeeeeeehhhcCHH-HHHHHhcCCCCCCCCcCCCCCeeeecccccCcccCHHHHHHhhhhhcc-CCCCCCC
Q 007550 68 ADIVVEGKSVAVHRCILSARSQF-FHELFKKGNDNDGSAVSEGKPKYLMTELVPYGKVGYEAFNVILYYFYT-GKLKPSP 145 (599)
Q Consensus 68 v~i~v~g~~~~~Hr~ILaarS~~-F~~lf~~~~~e~~~~~~~~~~~i~l~d~~~~~~i~~~~f~~lL~ylYt-g~l~~~~ 145 (599)
|+|-|||..|...+..|..--.- +..++..... ......++-+ |=+|. .|..+|.|+.+ |++..+
T Consensus 54 v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~-----~~~~~~~~f~-DR~~~------~F~~IL~~~r~~g~l~~p- 120 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQFPETLLGDPKKRMRY-----FDPLRNEYFF-DRNRP------SFDAILYYYQSGGRLRRP- 120 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGG-----EETTTTEEEE-CSCHH------HHHHHHHHHHHTSCCCCC-
T ss_pred EEEEeCCEEEEecHHHHhcCCCCcccccccCCcc-----cCCCCCCEEE-cCChH------HHHHHHHHHhcCCccccC-
Confidence 66789999999999888633111 1112211100 0113345555 33444 99999999999 988654
Q ss_pred CCCccccccCCCCcCCCchHHHHHHHHHHHHHcChHHHH
Q 007550 146 SEVSTCVDDACAHDACPPAINYAIELMYASAAFQMKELV 184 (599)
Q Consensus 146 ~~v~~c~d~~c~h~ac~p~id~~~eLL~~A~~~~i~~L~ 184 (599)
.+++ ...++.-|..|++.+..
T Consensus 121 ~~~~------------------~~~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 121 VNVP------------------LDIFSEEIRFYELGEEA 141 (514)
T ss_dssp TTSC------------------HHHHHHHHHHTTCCHHH
T ss_pred Cccc------------------HHHHHHHHHhcCCCHHH
Confidence 3321 24578888999997654
Done!