Query 007551
Match_columns 599
No_of_seqs 329 out of 2330
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 12:09:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0717 Molecular chaperone (D 100.0 1.6E-90 3.6E-95 730.8 28.1 483 2-598 4-490 (508)
2 COG5269 ZUO1 Ribosome-associat 100.0 7.2E-33 1.6E-37 277.4 13.7 191 5-232 42-235 (379)
3 COG0484 DnaJ DnaJ-class molecu 99.9 1.4E-23 3E-28 222.2 9.1 74 4-81 2-75 (371)
4 KOG0713 Molecular chaperone (D 99.8 3E-21 6.6E-26 200.3 8.4 75 4-82 14-88 (336)
5 PRK14288 chaperone protein Dna 99.8 5.5E-19 1.2E-23 189.1 8.7 71 5-79 2-72 (369)
6 PRK14296 chaperone protein Dna 99.8 6.9E-19 1.5E-23 188.5 8.7 72 5-81 3-74 (372)
7 KOG0712 Molecular chaperone (D 99.8 6.7E-19 1.4E-23 184.6 8.2 75 5-86 3-77 (337)
8 PRK14286 chaperone protein Dna 99.7 3.7E-18 8.1E-23 182.9 9.4 72 5-80 3-74 (372)
9 PRK14285 chaperone protein Dna 99.7 8.7E-18 1.9E-22 179.6 9.3 72 5-80 2-73 (365)
10 PRK14279 chaperone protein Dna 99.7 9.4E-18 2E-22 180.9 8.9 70 5-78 8-77 (392)
11 PRK14276 chaperone protein Dna 99.7 1.2E-17 2.6E-22 179.4 8.7 72 5-81 3-74 (380)
12 PRK14287 chaperone protein Dna 99.7 1.3E-17 2.7E-22 178.8 8.5 70 5-79 3-72 (371)
13 PRK14301 chaperone protein Dna 99.7 1.8E-17 3.8E-22 177.8 9.4 72 5-80 3-74 (373)
14 PRK14282 chaperone protein Dna 99.7 2.1E-17 4.5E-22 176.9 9.8 72 5-79 3-74 (369)
15 PRK14294 chaperone protein Dna 99.7 1.7E-17 3.6E-22 177.5 8.6 72 5-80 3-74 (366)
16 PRK14295 chaperone protein Dna 99.7 2.3E-17 5.1E-22 177.7 9.7 72 5-80 8-83 (389)
17 PRK14297 chaperone protein Dna 99.7 2.4E-17 5.3E-22 177.0 9.3 72 5-80 3-74 (380)
18 PRK14298 chaperone protein Dna 99.7 2.2E-17 4.8E-22 177.3 8.7 71 4-79 3-73 (377)
19 PRK14277 chaperone protein Dna 99.7 3.2E-17 7E-22 176.4 9.8 72 5-80 4-75 (386)
20 PRK14278 chaperone protein Dna 99.7 3.8E-17 8.1E-22 175.5 9.2 68 6-78 3-70 (378)
21 PRK14299 chaperone protein Dna 99.7 4.9E-17 1.1E-21 168.9 9.6 70 5-79 3-72 (291)
22 PRK10767 chaperone protein Dna 99.7 4.2E-17 9.2E-22 174.6 9.2 71 5-79 3-73 (371)
23 PRK14291 chaperone protein Dna 99.7 6.6E-17 1.4E-21 173.9 8.9 70 5-79 2-71 (382)
24 PRK14280 chaperone protein Dna 99.7 6.2E-17 1.3E-21 173.7 8.6 71 5-80 3-73 (376)
25 PTZ00037 DnaJ_C chaperone prot 99.7 3.3E-17 7.1E-22 178.1 6.4 68 5-80 27-94 (421)
26 PRK14284 chaperone protein Dna 99.7 1.3E-16 2.8E-21 172.0 9.2 72 6-81 1-72 (391)
27 PRK14283 chaperone protein Dna 99.7 6.8E-17 1.5E-21 173.5 6.8 71 5-80 4-74 (378)
28 PRK14281 chaperone protein Dna 99.7 1.4E-16 3E-21 172.1 8.5 72 5-80 2-73 (397)
29 KOG0718 Molecular chaperone (D 99.7 8.3E-17 1.8E-21 172.2 6.1 76 5-81 8-83 (546)
30 TIGR02349 DnaJ_bact chaperone 99.6 2.3E-16 5.1E-21 167.8 8.6 69 7-80 1-69 (354)
31 PTZ00341 Ring-infected erythro 99.6 1E-16 2.3E-21 183.7 5.0 73 4-81 571-643 (1136)
32 PRK14300 chaperone protein Dna 99.6 5.1E-16 1.1E-20 166.5 8.5 70 6-80 3-72 (372)
33 KOG0719 Molecular chaperone (D 99.6 3.1E-16 6.7E-21 155.8 5.8 73 3-77 11-83 (264)
34 PF00226 DnaJ: DnaJ domain; I 99.6 5.2E-16 1.1E-20 125.4 5.3 64 7-73 1-64 (64)
35 PRK10266 curved DNA-binding pr 99.6 1.1E-15 2.5E-20 159.8 8.4 68 5-77 3-70 (306)
36 PRK14290 chaperone protein Dna 99.6 8.7E-16 1.9E-20 164.3 7.5 70 6-78 3-72 (365)
37 KOG0691 Molecular chaperone (D 99.6 7.5E-16 1.6E-20 159.9 6.7 70 5-78 4-73 (296)
38 PRK14289 chaperone protein Dna 99.6 1.6E-15 3.5E-20 163.2 8.4 71 5-79 4-74 (386)
39 KOG0716 Molecular chaperone (D 99.6 1E-15 2.2E-20 155.2 5.8 71 6-80 31-101 (279)
40 PRK14292 chaperone protein Dna 99.6 3.4E-15 7.5E-20 159.9 6.7 68 6-78 2-69 (371)
41 KOG0624 dsRNA-activated protei 99.6 5.2E-15 1.1E-19 154.5 7.8 72 3-75 391-462 (504)
42 PRK14293 chaperone protein Dna 99.5 3.8E-15 8.2E-20 159.8 6.4 69 5-78 2-70 (374)
43 KOG0715 Molecular chaperone (D 99.5 5.8E-15 1.3E-19 153.4 6.3 69 4-77 41-109 (288)
44 smart00271 DnaJ DnaJ molecular 99.5 3.8E-14 8.1E-19 112.7 6.7 59 6-67 1-59 (60)
45 COG2214 CbpA DnaJ-class molecu 99.5 3.6E-14 7.8E-19 135.9 6.7 73 1-76 1-73 (237)
46 cd06257 DnaJ DnaJ domain or J- 99.5 1.1E-13 2.3E-18 108.1 6.5 55 7-65 1-55 (55)
47 TIGR03835 termin_org_DnaJ term 99.4 2.3E-13 4.9E-18 153.8 7.0 70 5-79 1-70 (871)
48 KOG0721 Molecular chaperone (D 99.4 3.4E-13 7.4E-18 133.2 6.2 70 4-77 97-166 (230)
49 KOG0550 Molecular chaperone (D 99.4 3.4E-13 7.4E-18 143.6 4.9 70 3-75 370-439 (486)
50 PHA03102 Small T antigen; Revi 99.4 6E-13 1.3E-17 126.6 5.1 66 5-78 4-71 (153)
51 KOG0714 Molecular chaperone (D 99.3 9.6E-13 2.1E-17 132.3 6.1 74 5-81 2-75 (306)
52 PRK01356 hscB co-chaperone Hsc 99.3 1.4E-12 3E-17 125.8 6.2 71 5-76 1-73 (166)
53 PRK05014 hscB co-chaperone Hsc 99.3 2.7E-12 5.8E-17 124.3 7.0 70 6-75 1-73 (171)
54 PRK03578 hscB co-chaperone Hsc 99.3 6.5E-12 1.4E-16 122.2 7.3 75 1-75 1-78 (176)
55 PRK00294 hscB co-chaperone Hsc 99.2 1.8E-11 4E-16 118.8 7.9 72 4-75 2-76 (173)
56 KOG0720 Molecular chaperone (D 99.2 1.7E-11 3.7E-16 132.0 5.2 66 5-75 234-299 (490)
57 PRK09430 djlA Dna-J like membr 99.1 1.3E-10 2.8E-15 119.9 6.0 60 6-65 200-262 (267)
58 KOG0722 Molecular chaperone (D 99.1 5.8E-11 1.3E-15 119.8 3.0 67 4-75 31-97 (329)
59 PTZ00100 DnaJ chaperone protei 99.0 3E-10 6.4E-15 103.5 4.2 52 5-64 64-115 (116)
60 COG5407 SEC63 Preprotein trans 98.9 1.3E-09 2.7E-14 117.3 6.9 74 4-77 96-170 (610)
61 PHA02624 large T antigen; Prov 98.9 7.8E-10 1.7E-14 124.3 4.5 61 4-72 9-71 (647)
62 PRK01773 hscB co-chaperone Hsc 98.8 6.7E-09 1.5E-13 101.0 6.7 71 5-75 1-74 (173)
63 TIGR00714 hscB Fe-S protein as 98.7 3.8E-08 8.2E-13 94.3 6.8 59 18-76 3-62 (157)
64 KOG0724 Zuotin and related mol 98.6 9.6E-08 2.1E-12 101.1 9.5 180 18-232 4-188 (335)
65 KOG1150 Predicted molecular ch 98.6 6.5E-08 1.4E-12 95.1 5.4 67 5-74 52-118 (250)
66 PF12171 zf-C2H2_jaz: Zinc-fin 98.5 6.8E-08 1.5E-12 66.1 1.7 26 299-324 2-27 (27)
67 smart00451 ZnF_U1 U1-like zinc 98.1 2.1E-06 4.5E-11 61.5 2.4 33 297-329 2-34 (35)
68 PF12874 zf-met: Zinc-finger o 98.0 4.5E-06 9.7E-11 55.6 2.1 25 299-323 1-25 (25)
69 KOG1789 Endocytosis protein RM 97.7 3.6E-05 7.9E-10 90.0 5.2 53 5-64 1280-1336(2235)
70 KOG3408 U1-like Zn-finger-cont 97.6 2.5E-05 5.5E-10 71.4 1.9 36 296-331 55-90 (129)
71 KOG0568 Molecular chaperone (D 97.5 7.1E-05 1.5E-09 75.5 4.2 55 6-65 47-102 (342)
72 KOG2785 C2H2-type Zn-finger pr 97.0 0.00063 1.4E-08 73.0 4.2 39 294-332 64-102 (390)
73 KOG0723 Molecular chaperone (D 96.8 0.0017 3.6E-08 58.7 4.6 50 9-66 59-108 (112)
74 COG5112 UFD2 U1-like Zn-finger 96.5 0.001 2.2E-08 59.9 1.3 37 296-332 53-89 (126)
75 PF06220 zf-U1: U1 zinc finger 96.2 0.0037 8E-08 46.6 2.5 32 298-329 3-36 (38)
76 KOG3192 Mitochondrial J-type c 95.9 0.0092 2E-07 57.3 4.1 72 4-75 6-80 (168)
77 COG1076 DjlA DnaJ-domain-conta 95.3 0.013 2.8E-07 57.1 3.2 58 6-63 113-173 (174)
78 PF00096 zf-C2H2: Zinc finger, 95.1 0.015 3.2E-07 37.8 1.9 22 299-320 1-22 (23)
79 KOG0717 Molecular chaperone (D 95.0 0.08 1.7E-06 58.6 8.1 71 160-231 133-203 (508)
80 KOG0431 Auxilin-like protein a 94.9 0.032 7E-07 62.3 5.2 49 14-62 396-447 (453)
81 PLN02748 tRNA dimethylallyltra 94.9 0.019 4.2E-07 64.2 3.5 37 296-332 416-453 (468)
82 COG5188 PRP9 Splicing factor 3 93.6 0.04 8.7E-07 58.9 2.2 65 296-360 236-312 (470)
83 PF13894 zf-C2H2_4: C2H2-type 93.4 0.052 1.1E-06 34.7 1.7 22 299-320 1-22 (24)
84 PF13912 zf-C2H2_6: C2H2-type 93.2 0.05 1.1E-06 36.6 1.5 23 298-320 1-23 (27)
85 COG1076 DjlA DnaJ-domain-conta 93.2 0.061 1.3E-06 52.5 2.6 69 7-75 2-73 (174)
86 KOG4727 U1-like Zn-finger prot 93.0 0.058 1.2E-06 52.6 2.1 35 296-330 73-107 (193)
87 PF12756 zf-C2H2_2: C2H2 type 91.4 0.069 1.5E-06 45.6 0.5 31 298-328 50-80 (100)
88 KOG3032 Uncharacterized conser 91.3 0.17 3.8E-06 51.5 3.3 36 296-332 33-68 (264)
89 smart00355 ZnF_C2H2 zinc finge 90.1 0.24 5.2E-06 31.7 2.1 21 299-319 1-21 (26)
90 PF12756 zf-C2H2_2: C2H2 type 87.3 0.19 4.2E-06 42.8 0.2 30 568-597 50-79 (100)
91 KOG2837 Protein containing a U 87.2 0.17 3.6E-06 52.7 -0.3 35 298-332 25-59 (309)
92 PF07535 zf-DBF: DBF zinc fing 84.5 0.58 1.3E-05 37.0 1.6 28 297-327 4-31 (49)
93 PHA02768 hypothetical protein; 84.4 0.59 1.3E-05 37.8 1.7 24 299-324 6-29 (55)
94 smart00586 ZnF_DBF Zinc finger 84.1 0.61 1.3E-05 36.9 1.6 30 296-328 3-32 (49)
95 PF00096 zf-C2H2: Zinc finger, 83.9 0.46 1E-05 30.6 0.7 20 570-589 2-21 (23)
96 PF13894 zf-C2H2_4: C2H2-type 81.4 0.66 1.4E-05 29.4 0.7 20 570-589 2-21 (24)
97 PF03656 Pam16: Pam16; InterP 80.8 2.3 5E-05 40.0 4.3 49 8-64 60-108 (127)
98 PF04959 ARS2: Arsenite-resist 80.4 1.7 3.7E-05 44.2 3.6 37 297-334 76-112 (214)
99 PF13912 zf-C2H2_6: C2H2-type 80.1 0.77 1.7E-05 30.8 0.7 20 570-589 3-22 (27)
100 PHA00616 hypothetical protein 76.8 1.3 2.8E-05 34.4 1.1 22 299-320 2-23 (44)
101 smart00355 ZnF_C2H2 zinc finge 74.5 1.1 2.4E-05 28.5 0.3 20 570-589 2-21 (26)
102 PF12171 zf-C2H2_jaz: Zinc-fin 71.5 1.1 2.3E-05 30.4 -0.4 24 569-592 2-25 (27)
103 KOG1029 Endocytic adaptor prot 70.9 17 0.00037 43.2 8.7 21 574-594 816-836 (1118)
104 PF13913 zf-C2HC_2: zinc-finge 69.9 3.6 7.9E-05 27.8 1.9 21 299-320 3-23 (25)
105 KOG3454 U1 snRNP-specific prot 69.8 5.6 0.00012 38.9 3.9 38 298-335 3-42 (165)
106 PF10147 CR6_interact: Growth 68.6 48 0.001 34.0 10.4 20 224-243 175-194 (217)
107 PF12874 zf-met: Zinc-finger o 68.6 1.3 2.8E-05 29.1 -0.5 22 570-591 2-23 (25)
108 PHA02768 hypothetical protein; 64.2 3.3 7.2E-05 33.6 1.0 24 567-590 4-27 (55)
109 KOG0227 Splicing factor 3a, su 61.9 5.6 0.00012 39.9 2.3 39 296-334 51-89 (222)
110 COG5246 PRP11 Splicing factor 55.0 7.1 0.00015 38.9 1.7 35 296-330 51-85 (222)
111 KOG4848 Extracellular matrix-a 52.9 44 0.00096 33.7 6.8 21 222-242 184-204 (225)
112 KOG2482 Predicted C2H2-type Zn 52.5 5.2 0.00011 43.3 0.4 32 294-325 191-222 (423)
113 PF13446 RPT: A repeated domai 51.1 27 0.00059 28.1 4.3 26 7-32 6-31 (62)
114 PHA00732 hypothetical protein 50.3 10 0.00022 32.7 1.8 22 299-320 2-23 (79)
115 PHA00616 hypothetical protein 48.2 7.6 0.00017 30.1 0.6 19 570-588 3-21 (44)
116 PF13465 zf-H2C2_2: Zinc-finge 47.3 8.6 0.00019 26.0 0.7 14 297-310 13-26 (26)
117 smart00451 ZnF_U1 U1-like zinc 46.8 9.2 0.0002 26.9 0.8 26 568-593 3-28 (35)
118 PF14687 DUF4460: Domain of un 46.0 33 0.00072 31.5 4.5 50 16-65 4-53 (112)
119 KOG0150 Spliceosomal protein F 39.5 28 0.0006 37.4 3.3 36 297-332 9-45 (336)
120 smart00734 ZnF_Rad18 Rad18-lik 39.3 22 0.00047 24.4 1.7 20 299-319 2-21 (26)
121 KOG1994 Predicted RNA binding 38.5 16 0.00034 37.7 1.3 24 296-319 237-260 (268)
122 KOG2384 Major histocompatibili 37.1 9.2 0.0002 38.6 -0.6 35 295-330 81-115 (223)
123 KOG3623 Homeobox transcription 35.4 11 0.00024 44.5 -0.5 29 297-325 308-336 (1007)
124 PF12269 zf-CpG_bind_C: CpG bi 34.7 48 0.001 34.4 4.0 30 416-446 141-170 (236)
125 COG4049 Uncharacterized protei 34.3 18 0.00038 29.7 0.7 26 297-323 16-41 (65)
126 PF05605 zf-Di19: Drought indu 33.4 35 0.00076 26.8 2.3 22 298-320 2-23 (54)
127 KOG3608 Zn finger proteins [Ge 33.1 15 0.00033 40.1 0.2 21 569-589 208-228 (467)
128 PF08790 zf-LYAR: LYAR-type C2 33.0 8.4 0.00018 27.2 -1.1 19 299-318 1-19 (28)
129 PTZ00448 hypothetical protein; 32.7 35 0.00077 37.5 2.9 36 297-332 313-348 (373)
130 PF04988 AKAP95: A-kinase anch 32.5 46 0.00099 32.7 3.3 38 299-336 1-38 (165)
131 PF14968 CCDC84: Coiled coil p 32.1 25 0.00055 38.2 1.7 33 300-335 1-33 (336)
132 PF11833 DUF3353: Protein of u 29.5 74 0.0016 32.0 4.3 38 15-64 1-38 (194)
133 PRK00247 putative inner membra 28.7 1E+02 0.0022 34.7 5.7 15 167-181 261-275 (429)
134 KOG2462 C2H2-type Zn-finger pr 28.2 31 0.00068 36.5 1.5 27 296-322 159-185 (279)
135 KOG2462 C2H2-type Zn-finger pr 27.7 23 0.0005 37.4 0.5 24 297-320 214-237 (279)
136 PHA00733 hypothetical protein 27.6 41 0.0009 31.4 2.1 25 298-323 99-123 (128)
137 PF02892 zf-BED: BED zinc fing 26.6 34 0.00075 25.5 1.1 24 296-319 14-41 (45)
138 COG5067 DBF4 Protein kinase es 26.4 22 0.00048 39.3 0.0 29 296-327 420-448 (468)
139 PTZ00266 NIMA-related protein 25.9 3.5E+02 0.0077 33.9 9.9 11 301-311 563-573 (1021)
140 KOG4722 Zn-finger protein [Gen 25.5 5.7E+02 0.012 29.1 10.4 31 300-330 495-525 (672)
141 KOG2785 C2H2-type Zn-finger pr 24.6 56 0.0012 36.1 2.6 35 298-332 3-37 (390)
142 PHA00733 hypothetical protein 24.4 48 0.001 31.0 1.9 24 297-320 72-95 (128)
143 KOG2891 Surface glycoprotein [ 24.0 1.1E+02 0.0023 32.7 4.5 19 105-123 212-230 (445)
144 KOG1074 Transcriptional repres 24.0 37 0.0008 40.9 1.2 22 299-320 880-901 (958)
145 PF04423 Rad50_zn_hook: Rad50 23.2 73 0.0016 25.0 2.4 31 300-333 22-52 (54)
146 KOG1029 Endocytic adaptor prot 21.3 5.9E+02 0.013 31.2 10.0 13 192-204 332-344 (1118)
No 1
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-90 Score=730.83 Aligned_cols=483 Identities=39% Similarity=0.600 Sum_probs=361.4
Q ss_pred CCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 2 ~~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
+..++|||+||||.++|++.+||++||+|||+|||||| | +..++|+++|+.|+.||+|||||++|+|||+|+.+||+
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDkn--p-d~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKN--P-DRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCC--C-ccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 46789999999999999999999999999999999998 3 37899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccchhhhHHHHhhhhhHHHHHhhcCCCcccccCccCCCCCCCccchh
Q 007551 82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT 161 (599)
Q Consensus 82 ~~~~~~~~~~~~~dl~~~Fs~s~f~gf~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fGd~~s~~e~V~ 161 (599)
+.+... +..++++|+||+++||.||+++..|||.||++||..++..++.|+. +....+|.||++.|+|+.|.
T Consensus 81 ~~~s~~--~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~------d~~~~ap~fg~~~t~ye~~~ 152 (508)
T KOG0717|consen 81 GKNSDT--GVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLG------DSKLLYPLFGYSTTDYEQVV 152 (508)
T ss_pred CCCCcc--ccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhcc------CCccccccccCCCCcHHHHH
Confidence 876532 4678999999999999999999999999999999999998887754 45567999999999999999
Q ss_pred hhhhhhhcceeeecccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHhHHHHH
Q 007551 162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIE 241 (599)
Q Consensus 162 ~FY~~W~~F~T~RsFsw~Deyd~~~a~nR~~RR~mEKENkK~R~k~kKE~n~~VR~LV~~vkkRDpRv~~~~~~~~~e~e 241 (599)
.||.||++|+|.++|+|+|+|+++++.+|..+|+|+++|+++|+.+|++||.+||.||.||++|||||++++.++..+.+
T Consensus 153 ~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k~~E~~ 232 (508)
T KOG0717|consen 153 PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELKDAEAY 232 (508)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997666666666
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHhcccchhhhhhccccCcccCCCcc-hhHHHHhhccCccccccccccccChHHHHHh
Q 007551 242 RKREEEKERKKRLEKERM---ERAKRYEEPAWARIDDEGDNEVGNEEG-LEEEEIEKKRSEFYCVLCGKKFKSEKQWTNH 317 (599)
Q Consensus 242 rkk~ee~~rk~~~~k~r~---e~a~~~~e~~w~~~~e~e~~~~~~~~e-~~ee~~e~~~~~~~C~~C~K~F~s~~~~~nH 317 (599)
+.+.++ .|+.+...+++ .+...+...+|+...+.++.+....++ .++++.+.+.+.+||+||+|+|+|++||+||
T Consensus 233 r~kqe~-~Rk~~~~~r~e~~e~r~n~~e~~~~~~~~e~ed~~e~~~d~~~e~de~d~~ge~lyC~vCnKsFKseKq~kNH 311 (508)
T KOG0717|consen 233 RSKQEE-SRKQQLRKRREYAETRKNNGEGSEEALKEEIEDELEKSSDDETESDEADNEGEVLYCVVCNKSFKSEKQLKNH 311 (508)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccchhhhhhhhcCCceEEeeccccccchHHHHhh
Confidence 633333 33333322222 222233333444433333222221111 1222233445559999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHhhhhhhHhhhccCCchhhhhhhhhhhccCCcchhhccCCCCCCCCCCCcccccccccCCccccc
Q 007551 318 EQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNE 397 (599)
Q Consensus 318 ~~SKKHk~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~e~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (599)
++||||+++|.+|+++|.+|++.+..- +.+ ..+-++| ++
T Consensus 312 EnSKKHkenv~eLrqemEEEe~d~~~~-------------------qae--------------e~e~e~~--------se 350 (508)
T KOG0717|consen 312 ENSKKHKENVAELRQEMEEEEEDEAQG-------------------QAE--------------ENELEDF--------SE 350 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh-------------------ccc--------------cchhhhh--------hh
Confidence 999999999999999998776210000 000 0012222 11
Q ss_pred cccccCCCCCCcccchhhhHHHHHHHhhccccccccccccccccccccccccccCCCccccccccchhhhhhhhhccCCC
Q 007551 398 VDDRFGKEDEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKK 477 (599)
Q Consensus 398 ~~~~~~~~~~~~~e~~~de~~~le~m~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~k~~~~~~~~~k~~~ 477 (599)
++.+ ++.++.+....++....-|+|+..|-.....+-...+-+.+ ++.+.+..++.+.++.|.++..+ +.|.-.
T Consensus 351 ee~~---~d~ses~~~n~~~~~~k~~~s~d~n~~~n~~~E~~d~~~e~--~e~d~dtae~ee~d~qk~~~~~k-~~K~~~ 424 (508)
T KOG0717|consen 351 EEPE---DDPSESEYKNKEKDRDKKNVSFDENEKVNTFAEISDEDFEP--AEEDGDTAESEEFDQQKNKSVNK-KIKPCD 424 (508)
T ss_pred hccc---cCCCCCchhhhHhhhhhcccchhhhhhhccccccccCCCcc--cccccccccchhhccccccchhh-hccccc
Confidence 1112 12333445557889999999999997776555444432333 35566677788999999874443 333211
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCccccCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccchhhcccCCCC
Q 007551 478 SGGEAAKGDRDGFKSTNEEANGHHNSGVIEESSSHSCVGNKNNGISDNHSEKDPKIPDQPVDGKGTKKDRKAKLKNSSKG 557 (599)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~k~~skg 557 (599)
.+++++..++.+....+...+..++.+||+.
T Consensus 425 ----D~k~~a~kvk~pk~~~~kd~~k~a~~~p~~~--------------------------------------------- 455 (508)
T KOG0717|consen 425 ----DKKDEAKKVKKPKGKVTKDNKKPATVAPSSQ--------------------------------------------- 455 (508)
T ss_pred ----cchhhhhhccCCCCCCCCccCCCccCCCCCC---------------------------------------------
Confidence 3444455555444333333344445544441
Q ss_pred CccccccccCCchhhhhcccchhhhhhhhhhcCCCCccccc
Q 007551 558 NKTKTASKNSSNVCEKCGQEFETRNKLHKHLGDTGHASLKF 598 (599)
Q Consensus 558 ~k~k~~~~~~~~~c~~c~~~f~sr~kl~~hl~~~gh~~~k~ 598 (599)
...+-.+|.||++.|+||||||.||..||||++..
T Consensus 456 ------~psa~~~C~tCr~~FdSRnkLF~Hlk~tgHa~~~~ 490 (508)
T KOG0717|consen 456 ------TPSALISCTTCRESFDSRNKLFAHLKKTGHARLPS 490 (508)
T ss_pred ------CcchhHhhhhhhhhccchhHHHHHhhhcCCeeccc
Confidence 11245799999999999999999999999999864
No 2
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-33 Score=277.45 Aligned_cols=191 Identities=30% Similarity=0.440 Sum_probs=162.9
Q ss_pred ccCcccccCcCC---CCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 5 KRCLYEVLGLRK---ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 5 ~~d~YeVLGV~~---~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
+.|+|.+|||+. .|++.+|.+|+++.+++||||+....|. ......|++|+.||+||+|+..|..||+.....
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~--~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a-- 117 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGN--KGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA-- 117 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCC--CCcHHHHHHHHHHHHHhccHHHHhhcccccccc--
Confidence 478999999986 7999999999999999999999955442 356789999999999999999999999963211
Q ss_pred cCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccchhhhHHHHhhhhhHHHHHhhcCCCcccccCccCCCCCCCccchh
Q 007551 82 SDLNSASNCGPVPNLYSYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVT 161 (599)
Q Consensus 82 ~~~~~~~~~~~~~dl~~~Fs~s~f~gf~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fGd~~s~~e~V~ 161 (599)
..+.|. ......||.+|+++|++- +.| +..+++|++|.++++...|.
T Consensus 118 --------dvppp~-------------~~t~~~Ffe~w~pvFe~e----arF--------SkKqPvPsLg~~dss~keVe 164 (379)
T COG5269 118 --------DVPPPR-------------IYTPDEFFEVWEPVFERE----ARF--------SKKQPVPSLGPSDSSLKEVE 164 (379)
T ss_pred --------CCCCcc-------------CCCchhHHHHHHHHHHhh----hhc--------cccCCCCCCCCchhHHHHHH
Confidence 011111 122456999999999753 344 34578999999999999999
Q ss_pred hhhhhhhcceeeecccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Q 007551 162 AFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM 232 (599)
Q Consensus 162 ~FY~~W~~F~T~RsFsw~Deyd~~~a~nR~~RR~mEKENkK~R~k~kKE~n~~VR~LV~~vkkRDpRv~~~ 232 (599)
.||.||++|.|||+|.++|+--..+.++|..+|..|+.|+..|++.+...|.+|+.||..+.+|||||+-.
T Consensus 165 ~FY~FW~nFdSWRtFE~lded~pdd~e~rD~kry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~f 235 (379)
T COG5269 165 EFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSF 235 (379)
T ss_pred HHHHHHHhccccccccchhhhcCcchhhhhhHHHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999654
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.4e-23 Score=222.19 Aligned_cols=74 Identities=46% Similarity=0.745 Sum_probs=68.2
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
.++|||+||||+++||.+|||+|||+||++||||+| ++ .++|.++|++|++||+|||||++|+.||.++...+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n--~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN--PG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 478999999999999999999999999999999999 33 468999999999999999999999999999876544
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3e-21 Score=200.33 Aligned_cols=75 Identities=44% Similarity=0.709 Sum_probs=69.7
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhcc
Q 007551 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS 82 (599)
Q Consensus 4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~ 82 (599)
..+|||+||||+++|+..+||+|||||||+|||||| | +.+.|.+.|+.|+.||+|||||.+|+.||.+|+.+|..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkN--p--ddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKN--P--DDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--C--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 468999999999999999999999999999999999 3 34679999999999999999999999999999887764
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.5e-19 Score=189.08 Aligned_cols=71 Identities=39% Similarity=0.648 Sum_probs=64.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
..|||+||||+++||.++||+|||+||++||||+| ++ .+.|.++|++|++||+|||||.+|+.||.+|...
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~--~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~ 72 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRN--AG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence 47999999999999999999999999999999999 32 2458999999999999999999999999998643
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.9e-19 Score=188.49 Aligned_cols=72 Identities=39% Similarity=0.545 Sum_probs=65.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
.+|||+||||+++||..+||+|||+||++||||+| +. ..|.++|++|++||+|||||.+|+.||.+|...+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n--~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 57999999999999999999999999999999999 22 35889999999999999999999999999876543
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.7e-19 Score=184.55 Aligned_cols=75 Identities=41% Similarity=0.685 Sum_probs=68.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhccCC
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDL 84 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~~~ 84 (599)
.+.||+||||.++||..+||+|||+||++|||||| |+ |.++|++|+.||+|||||.+|..||.+|++.+.+++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn--~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~ 75 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKN--PD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG 75 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCC--cc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence 46799999999999999999999999999999999 43 789999999999999999999999999998886544
Q ss_pred CC
Q 007551 85 NS 86 (599)
Q Consensus 85 ~~ 86 (599)
.+
T Consensus 76 ~~ 77 (337)
T KOG0712|consen 76 GG 77 (337)
T ss_pred CC
Confidence 33
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.7e-18 Score=182.88 Aligned_cols=72 Identities=43% Similarity=0.770 Sum_probs=65.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
.+|||+||||+++||.++||+|||+||++||||+| ++ .++|.++|++|++||+||+||.+|+.||.++...+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKN--KG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 47999999999999999999999999999999998 32 34689999999999999999999999999987554
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=8.7e-18 Score=179.64 Aligned_cols=72 Identities=47% Similarity=0.745 Sum_probs=65.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
.+|||+||||+++||.++||+|||+||++||||+| ++ .+.|.++|++|++||+||+||.+|+.||.++...+
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN--KG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 47999999999999999999999999999999998 32 34688999999999999999999999999987543
No 10
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.4e-18 Score=180.94 Aligned_cols=70 Identities=37% Similarity=0.657 Sum_probs=64.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (599)
.+|||+||||+++||..+||+|||+||++||||+| ++ .+.|.++|+.|++||+|||||.+|+.||.+|..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN--PG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 47999999999999999999999999999999999 32 346899999999999999999999999999864
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=179.42 Aligned_cols=72 Identities=38% Similarity=0.580 Sum_probs=65.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
.+|||+||||+++||.++||+|||+||++||||+|. . +.|.++|+.|++||+||+||.+|+.||.+|...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK--E---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 479999999999999999999999999999999993 2 35889999999999999999999999999875443
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=178.75 Aligned_cols=70 Identities=41% Similarity=0.709 Sum_probs=64.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
..|||+||||+++||.++||+|||+||++||||+|. . +.|.++|+.|++||+||+||.+|+.||.+|...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~ 72 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK--A---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD 72 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence 579999999999999999999999999999999983 1 368899999999999999999999999998643
No 13
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.8e-17 Score=177.77 Aligned_cols=72 Identities=46% Similarity=0.740 Sum_probs=65.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
..|||+||||+++||.++||+|||+||++||||++ ++ ..+|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRN--PD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcC--CC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 47999999999999999999999999999999999 32 24688999999999999999999999999986543
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2.1e-17 Score=176.92 Aligned_cols=72 Identities=43% Similarity=0.725 Sum_probs=65.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
.+|||+||||+++||.++||+|||+||++||||+| ++ ....|.++|++|++||+|||||.+|+.||.++...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH--PE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--cc-chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 57999999999999999999999999999999998 32 23468999999999999999999999999987643
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.7e-17 Score=177.48 Aligned_cols=72 Identities=46% Similarity=0.790 Sum_probs=65.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
.+|||+||||+++||..+||+|||+||++||||++ ++ .+.|.++|+.|++||+||+||.+|+.||.+|...+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 58999999999999999999999999999999999 32 24688999999999999999999999999986543
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.3e-17 Score=177.71 Aligned_cols=72 Identities=43% Similarity=0.685 Sum_probs=64.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhh----ccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS----HRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs----~r~~~l 80 (599)
..|||+||||+++||..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||. ++...+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDAN--KG--DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 36999999999999999999999999999999998 32 24689999999999999999999999998 776544
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.4e-17 Score=177.00 Aligned_cols=72 Identities=46% Similarity=0.774 Sum_probs=65.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
..|||+||||+++||.++||+|||+||++||||++ ++ .+.|.++|+.|++||+||+||.+|+.||.+|...+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKN--KG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 47999999999999999999999999999999999 32 24689999999999999999999999999987544
No 18
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.2e-17 Score=177.26 Aligned_cols=71 Identities=42% Similarity=0.707 Sum_probs=64.7
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
..+|||+||||+++||.++||+|||+||++||||+|. . ..|.++|+.|++||+||+||.+|+.||.+|...
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK--E---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG 73 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC--C---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence 3479999999999999999999999999999999982 1 457899999999999999999999999998644
No 19
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.2e-17 Score=176.42 Aligned_cols=72 Identities=43% Similarity=0.761 Sum_probs=65.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
..|||+||||+++||.++||+|||+||++||||++ ++ .+.|+++|+.|++||+|||||.+|+.||.+|...+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 47999999999999999999999999999999999 32 24688999999999999999999999999987544
No 20
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.8e-17 Score=175.51 Aligned_cols=68 Identities=41% Similarity=0.646 Sum_probs=63.4
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (599)
+|||+||||+++||.++||+|||+||++||||+| + .+.|.++|+.|++||+||+||.+|+.||.+|..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~--~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN--P---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCC--C---cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 7999999999999999999999999999999999 3 246899999999999999999999999998763
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=4.9e-17 Score=168.95 Aligned_cols=70 Identities=40% Similarity=0.646 Sum_probs=64.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
..|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-----SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 479999999999999999999999999999999982 2458899999999999999999999999988653
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=4.2e-17 Score=174.57 Aligned_cols=71 Identities=49% Similarity=0.817 Sum_probs=64.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
.+|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 73 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRN--PG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA 73 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence 57999999999999999999999999999999998 32 2458899999999999999999999999987643
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=6.6e-17 Score=173.85 Aligned_cols=70 Identities=41% Similarity=0.724 Sum_probs=64.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
++|||+||||+++||.++||+|||+||++||||+| ++ +.|.++|+.|++||+|||||.+|+.||.++...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFN--KN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 57999999999999999999999999999999999 32 457899999999999999999999999987643
No 24
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=6.2e-17 Score=173.72 Aligned_cols=71 Identities=45% Similarity=0.649 Sum_probs=64.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
.+|||+||||+++||.++||+|||+||++||||+|. . ..|.++|++|++||+|||||.+|+.||.+|...+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~--~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 73 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK--E---EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP 73 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence 479999999999999999999999999999999983 2 3588999999999999999999999999987543
No 25
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.68 E-value=3.3e-17 Score=178.10 Aligned_cols=68 Identities=51% Similarity=0.837 Sum_probs=62.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
.+|||+||||+++||..+||+|||+||++||||+| + ..++|+.|++||+|||||.+|++||.+|...+
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~--~------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG--G------DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--c------hHHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 47999999999999999999999999999999998 2 14799999999999999999999999986543
No 26
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.3e-16 Score=172.02 Aligned_cols=72 Identities=44% Similarity=0.705 Sum_probs=65.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
.|||+||||+++||.++||+|||+||++||||+| ++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 72 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN--PG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPF 72 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccc
Confidence 4899999999999999999999999999999999 32 346899999999999999999999999999876543
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=6.8e-17 Score=173.49 Aligned_cols=71 Identities=41% Similarity=0.641 Sum_probs=65.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
.+|||+||||+++||..+||+|||+||++||||+| ++ +.|.++|+.|++||+|||||.+|++||.+|...+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS--EE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 68999999999999999999999999999999998 22 4689999999999999999999999999986543
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.4e-16 Score=172.11 Aligned_cols=72 Identities=46% Similarity=0.707 Sum_probs=65.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
..|||+||||+++|+..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKN--PD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 47999999999999999999999999999999999 32 24688999999999999999999999999987544
No 29
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.3e-17 Score=172.24 Aligned_cols=76 Identities=42% Similarity=0.613 Sum_probs=70.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
..+||.+|+|+++||.++|++|||++++.|||||+..| +..+.|++.|+.|+.||+|||||++|+.||.+|.++|.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dp-d~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDP-DQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCCh-hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 45899999999999999999999999999999999543 46778999999999999999999999999999999887
No 30
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.65 E-value=2.3e-16 Score=167.77 Aligned_cols=69 Identities=45% Similarity=0.739 Sum_probs=63.2
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 7 d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-----DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 7999999999999999999999999999999993 23578999999999999999999999999986543
No 31
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.64 E-value=1e-16 Score=183.74 Aligned_cols=73 Identities=27% Similarity=0.450 Sum_probs=66.0
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
+.++||+||||+++||..+||+|||+||++||||++ ++ . .|..+|+.|++||+|||||.+|++||.+|..++.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN--~~-~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKR--SG-N--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC-c--hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 468999999999999999999999999999999999 43 2 4788999999999999999999999999876543
No 32
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=5.1e-16 Score=166.48 Aligned_cols=70 Identities=36% Similarity=0.614 Sum_probs=63.8
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
+|||+||||+++||.++||+|||+||++||||++. . ..|+++|+.|++||+||+||.+|+.||.+|...+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~--~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD--A---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 79999999999999999999999999999999983 2 2478899999999999999999999999986543
No 33
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.1e-16 Score=155.82 Aligned_cols=73 Identities=51% Similarity=0.752 Sum_probs=67.0
Q ss_pred CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (599)
Q Consensus 3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (599)
..++|+|+||||.++||..+|++||++|||+||||++ +.....+|+..|+.|+.||.||||.++|+.||..|.
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 3567999999999999999999999999999999999 344667899999999999999999999999999764
No 34
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.61 E-value=5.2e-16 Score=125.43 Aligned_cols=64 Identities=45% Similarity=0.779 Sum_probs=59.2
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhh
Q 007551 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD 73 (599)
Q Consensus 7 d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YD 73 (599)
|||+||||+++++..+|+++|++|++.+|||++.. ....+...|..|+.||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~---~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSG---DEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTS---THHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchh---hhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 58999999999999999999999999999999832 22578999999999999999999999998
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.60 E-value=1.1e-15 Score=159.77 Aligned_cols=68 Identities=35% Similarity=0.582 Sum_probs=62.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (599)
..|||+||||+++||.++||+|||+||++||||++. . ..|.++|+.|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~--~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK--E---PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 369999999999999999999999999999999983 1 3589999999999999999999999999764
No 36
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=8.7e-16 Score=164.28 Aligned_cols=70 Identities=39% Similarity=0.743 Sum_probs=64.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (599)
.|||+||||+++||..+||+|||+||++||||++ +. ..+.|.++|+.|++||+||+||.+|+.||.+|..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PG-NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 7999999999999999999999999999999998 32 3346899999999999999999999999998764
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.5e-16 Score=159.94 Aligned_cols=70 Identities=49% Similarity=0.733 Sum_probs=64.9
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (599)
..|||.||||..+||..+|++|||++||+|||||| |+++ .|.+.|+.|.+||+||+||..|+.||..|..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKN--p~dP--~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKN--PGDP--QAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCC--CCCh--HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999 6533 3999999999999999999999999998753
No 38
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.6e-15 Score=163.25 Aligned_cols=71 Identities=51% Similarity=0.775 Sum_probs=65.0
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
.+|||+||||+++||.++|++|||+||++||||++ ++ .++|.++|+.|++||+||+||.+|+.||.++...
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKN--PG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 58999999999999999999999999999999999 32 2468999999999999999999999999987643
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1e-15 Score=155.19 Aligned_cols=71 Identities=51% Similarity=0.727 Sum_probs=64.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhh
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l 80 (599)
.++|+||||+++||.++||||||+|+++||||++. . + ++++.+|+.|+.||.|||||.+|..||.+|.-.+
T Consensus 31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~g--d-~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNG--D-N-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCC--C-C-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 46999999999999999999999999999999992 2 2 6799999999999999999999999999976544
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=3.4e-15 Score=159.93 Aligned_cols=68 Identities=43% Similarity=0.715 Sum_probs=63.1
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (599)
.|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.+|..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-----~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-----EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 58999999999999999999999999999999992 246889999999999999999999999998764
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.56 E-value=5.2e-15 Score=154.46 Aligned_cols=72 Identities=38% Similarity=0.648 Sum_probs=64.9
Q ss_pred CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
+.++|||.||||.++|+..+|.+|||+||++||||-.+. ......|.++|.-|..|-+|||||.+|+.||..
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd-EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD-EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC-HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 468999999999999999999999999999999999842 223456999999999999999999999999984
No 42
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.8e-15 Score=159.85 Aligned_cols=69 Identities=41% Similarity=0.691 Sum_probs=63.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (599)
..|||+||||+++||..+||+|||+||++||||++. . ..|.++|+.|++||+||+||.+|+.||.++..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~--~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK--E---PGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC--C---cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 379999999999999999999999999999999983 1 34789999999999999999999999998764
No 43
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.8e-15 Score=153.44 Aligned_cols=69 Identities=42% Similarity=0.639 Sum_probs=63.8
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (599)
Q Consensus 4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (599)
.+.|||+||||+++||..|||+||++||++||||.|.. ..|.++|+.|.+||+||+|+.+|..||..+.
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-----~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~ 109 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-----KEASKKFKEISEAYEILSDEEKRQEYDVYGL 109 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-----cchhhHHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 44599999999999999999999999999999999932 2799999999999999999999999999865
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.50 E-value=3.8e-14 Score=112.72 Aligned_cols=59 Identities=51% Similarity=0.837 Sum_probs=53.8
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChh
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~ 67 (599)
++||+||||+++++..+|+++|++|++.||||++. +. ...+...|..|+.||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~--~~-~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNP--GD-KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc-hHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999993 21 5678999999999999999985
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.6e-14 Score=135.89 Aligned_cols=73 Identities=44% Similarity=0.695 Sum_probs=65.4
Q ss_pred CCCCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (599)
Q Consensus 1 m~~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r 76 (599)
|+....+||+||||+++|+..+|++|||+||++||||++. +... .|.+.|+.|++||.||+||..|+.||..+
T Consensus 1 ~~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~--~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 1 MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNP--GDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CchhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC--Cchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4567789999999999999999999999999999999993 2222 58999999999999999999999999864
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.46 E-value=1.1e-13 Score=108.11 Aligned_cols=55 Identities=47% Similarity=0.770 Sum_probs=50.8
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007551 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (599)
Q Consensus 7 d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsD 65 (599)
|||+||||++++|.++|+++||+|++.||||++. +. ..+...|+.|+.||+||+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~--~~--~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--DD--PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--Cc--HHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999993 21 6789999999999999986
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.41 E-value=2.3e-13 Score=153.83 Aligned_cols=70 Identities=41% Similarity=0.653 Sum_probs=63.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~ 79 (599)
++|||+||||+++|+..+||+|||+|+++||||++. + ..+..+|+.|++||+||+||.+|+.||.++...
T Consensus 1 k~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~--~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK--A---PDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 369999999999999999999999999999999983 2 467889999999999999999999999987643
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.4e-13 Score=133.23 Aligned_cols=70 Identities=31% Similarity=0.557 Sum_probs=63.3
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (599)
Q Consensus 4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (599)
..-|+|+||||+++||..+||+|||+|+++|||||++.+ ....+.|..|.+||+.|+|+..|..|..+|.
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 356899999999999999999999999999999999322 4568899999999999999999999999865
No 49
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.4e-13 Score=143.63 Aligned_cols=70 Identities=49% Similarity=0.825 Sum_probs=65.1
Q ss_pred CCccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 3 ~~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
+...|||.||||.++|+..+||+|||++||.||||++ .+ +..+++.+|+.|-+||.||+||.+|..||+.
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~--ag-sq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN--AG-SQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC--cc-hhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 4568999999999999999999999999999999999 34 4678999999999999999999999999985
No 50
>PHA03102 Small T antigen; Reviewed
Probab=99.35 E-value=6e-13 Score=126.57 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=59.7
Q ss_pred ccCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccch
Q 007551 5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (599)
Q Consensus 5 ~~d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~ 78 (599)
...+|+||||+++| |..+||+|||++|+++|||++ + ..++|+.|+.||+||+|+..|..||.++..
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg--g------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG--G------DEEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--c------hhHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 35689999999999 999999999999999999997 2 246999999999999999999999998753
No 51
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.6e-13 Score=132.28 Aligned_cols=74 Identities=42% Similarity=0.698 Sum_probs=65.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhc
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~ 81 (599)
+.|||.||||.+.|+..+|++|||+||++||||++ ++. ...|..+|++|.+||+||+||.+|..||.++...+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~--~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKN--PSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 57999999999999999999999999999999998 443 445666999999999999999999999999874443
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1.4e-12 Score=125.79 Aligned_cols=71 Identities=25% Similarity=0.324 Sum_probs=59.8
Q ss_pred ccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (599)
Q Consensus 5 ~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r 76 (599)
+.|||+||||++. ++..+|+++||+|+++||||++.. ......+...|..|++||.||+||.+|+.|+-..
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~-~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT-LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 3689999999996 789999999999999999999832 1122345667999999999999999999998753
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.31 E-value=2.7e-12 Score=124.34 Aligned_cols=70 Identities=29% Similarity=0.382 Sum_probs=59.5
Q ss_pred cCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 6 ~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
.|||+||||++. ++..+|+++||+|+++||||+....+. ....|...|..|++||+||+||.+|+.|+-.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999995 778999999999999999999843221 1224788999999999999999999999964
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=6.5e-12 Score=122.23 Aligned_cols=75 Identities=29% Similarity=0.429 Sum_probs=61.7
Q ss_pred CCCCccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 1 MASEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 1 m~~~~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
|-+...|||+||||++. ++..+|+++||+|+++||||++...+. ....+...+..|+.||.||+||.+|+.|+-.
T Consensus 1 ~~~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 1 MVSLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 34567899999999995 688999999999999999999842211 1123567789999999999999999999974
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.23 E-value=1.8e-11 Score=118.79 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=61.3
Q ss_pred CccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 4 EKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 4 ~~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
...+||++|||++. .+..+|+++||+|+++||||++...+. ....+...|..|+.||.||+||.+|+.|+-.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 46789999999996 678999999999999999999843211 1234788999999999999999999999975
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-11 Score=131.97 Aligned_cols=66 Identities=33% Similarity=0.577 Sum_probs=62.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
.+|+|.||||+.++++++||+.||++|...|||||. .+.|.+.|+.|+.||+||+|+.+|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-----~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-----IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-----ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 579999999999999999999999999999999993 457999999999999999999999999975
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.07 E-value=1.3e-10 Score=119.95 Aligned_cols=60 Identities=40% Similarity=0.632 Sum_probs=52.9
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCC---HHHHHHHHHHHHHHHHhcCC
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLS---QAEATAQFQELVHAYEVLSD 65 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~---~~ea~~~F~~I~~AYeVLsD 65 (599)
.++|+||||+++||.++||+|||+|+++||||++...+.+ .+.|+++|+.|+.||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998543322 35689999999999999974
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.8e-11 Score=119.79 Aligned_cols=67 Identities=36% Similarity=0.622 Sum_probs=61.1
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
...|-|+||||.+.|+..+|.+|||+||++||||++.+ +++.+.|..|..||++|.|...|..||-.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-----~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-----PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-----chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 45789999999999999999999999999999999932 34569999999999999999999999975
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.99 E-value=3e-10 Score=103.54 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=46.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLs 64 (599)
..++|+||||+++||.++|+++||+|++++|||+. | ....|+.|++||+||.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-----STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-----CHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999985 2 2468899999999995
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.93 E-value=1.3e-09 Score=117.28 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=64.9
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCC-CCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccc
Q 007551 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQ-SGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (599)
Q Consensus 4 ~~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~-~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~ 77 (599)
..=|+|+||||..+++..+||++||+|+.+|||||..+ -+....+-++.+..|++||..|+|...|..|-.+|.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 34589999999999999999999999999999999832 023456789999999999999999999999998864
No 61
>PHA02624 large T antigen; Provisional
Probab=98.91 E-value=7.8e-10 Score=124.27 Aligned_cols=61 Identities=28% Similarity=0.407 Sum_probs=56.1
Q ss_pred CccCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhh
Q 007551 4 EKRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72 (599)
Q Consensus 4 ~~~d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~Y 72 (599)
..+++|+||||+++| +..+||+|||+||++||||++ | +.++|+.|+.||++|+|+.+|..|
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 346799999999999 999999999999999999997 1 257999999999999999999999
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.81 E-value=6.7e-09 Score=101.01 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=60.0
Q ss_pred ccCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 5 ~~d~YeVLGV~~~--As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
..|||++|||++. .+...|+++|+.|...+|||+....+. ....|......|++||.+|.||-+|+.|=-.
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 3699999999995 899999999999999999999843321 1234677899999999999999999999764
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.67 E-value=3.8e-08 Score=94.33 Aligned_cols=59 Identities=34% Similarity=0.405 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhcc
Q 007551 18 CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (599)
Q Consensus 18 As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r 76 (599)
.+..+|+++||+|+++||||+....+. ....+...|..|++||.||+||.+|+.|+-..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 477899999999999999999743221 22347889999999999999999999999864
No 64
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.6e-08 Score=101.07 Aligned_cols=180 Identities=22% Similarity=0.284 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhhccchhhccCCCCCCCCCCCCCcc
Q 007551 18 CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDLNSASNCGPVPNLY 97 (599)
Q Consensus 18 As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~r~~~l~~~~~~~~~~~~~~dl~ 97 (599)
++...|..+|+..++.+||++...-....-.....|++|.+||.||++...|..+|.+.. +.. .++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~-~~~----------~l~--- 69 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDK-FAE----------ALP--- 69 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhH-HHh----------cCc---
Confidence 577889999999999999999721000111356789999999999999777778888741 110 011
Q ss_pred ccCCCCCCCCCCCCCCCccchhhhHHHHhhhhhHHHHHhhcCCCcccccCccCCCCCCCccchhhhhhhhhcceeeeccc
Q 007551 98 SYFSNTAFSGYSDSGKGFYKVYSDLFNKIYSVEVSYVKKLGLGLDVLREAPIMGNLESPYGQVTAFYNYWLGFSTVMDFC 177 (599)
Q Consensus 98 ~~Fs~s~f~gf~d~~~gFy~vy~~vF~~i~~eE~~f~~~~g~~~s~~~~~P~fGd~~s~~e~V~~FY~~W~~F~T~RsFs 177 (599)
++......|+..++..|.... .+.....+|.++..+++...|..||.+|..|..|+.|.
T Consensus 70 ---------~~~~~~~~~~~~~~~~~~v~~------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~ 128 (335)
T KOG0724|consen 70 ---------LEKRLEDKIEEYIGLVFDVNI------------RESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYP 128 (335)
T ss_pred ---------cccccchhHHhhhhhHHHHhh------------hhccCCCccccCccccccccccccCCccccccccccCC
Confidence 111122334444445444322 13345678999988877788899999999999999999
Q ss_pred ccccccccCCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Q 007551 178 WVDEYDVMAGPNRKSRRVM-----EEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDM 232 (599)
Q Consensus 178 w~Deyd~~~a~nR~~RR~m-----EKENkK~R~k~kKE~n~~VR~LV~~vkkRDpRv~~~ 232 (599)
..++.+.....+|...|++ .+.|...+.+.+......++.||..+...++++.-.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (335)
T KOG0724|consen 129 QKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWR 188 (335)
T ss_pred CCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHHhhhcccccccce
Confidence 9887766666889999999 488999999999999999999999999999999753
No 65
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.5e-08 Score=95.11 Aligned_cols=67 Identities=30% Similarity=0.462 Sum_probs=59.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhh
Q 007551 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS 74 (599)
Q Consensus 5 ~~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs 74 (599)
.-++|+||.|.+..+.++||+.||+|++..||||| +. +.+.|...|--|.+||.+|-|+..|..-+.
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN--~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN--PD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCC--cc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 35799999999999999999999999999999999 33 567899999999999999999997765554
No 66
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.46 E-value=6.8e-08 Score=66.06 Aligned_cols=26 Identities=58% Similarity=0.957 Sum_probs=25.4
Q ss_pred cccccccccccChHHHHHhHhhHHHH
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQSKKHK 324 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SKKHk 324 (599)
|||++|+|.|.++.+|.+|++||+|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 79999999999999999999999997
No 67
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.08 E-value=2.1e-06 Score=61.46 Aligned_cols=33 Identities=39% Similarity=0.717 Sum_probs=30.6
Q ss_pred CccccccccccccChHHHHHhHhhHHHHHHHHH
Q 007551 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVAD 329 (599)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~ 329 (599)
..|+|.+|++.|.+..+|.+|.+|++|+++|++
T Consensus 2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 358999999999999999999999999999875
No 68
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=97.96 E-value=4.5e-06 Score=55.62 Aligned_cols=25 Identities=52% Similarity=0.991 Sum_probs=24.4
Q ss_pred cccccccccccChHHHHHhHhhHHH
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQSKKH 323 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SKKH 323 (599)
|+|.+|++.|.+..+|..|++|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 7899999999999999999999998
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3.6e-05 Score=89.95 Aligned_cols=53 Identities=36% Similarity=0.484 Sum_probs=45.4
Q ss_pred ccCcccccCcCCC----CCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007551 5 KRCLYEVLGLRKE----CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (599)
Q Consensus 5 ~~d~YeVLGV~~~----As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLs 64 (599)
-.+.|+||.|+-+ ...+.||++|+|||.+|||||| | +..++|..+++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--P-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--P-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--c-----hHHHHHHHHHHHHHHHH
Confidence 3468999999863 3447899999999999999999 2 46889999999999998
No 70
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=97.61 E-value=2.5e-05 Score=71.41 Aligned_cols=36 Identities=36% Similarity=0.758 Sum_probs=34.2
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHH
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 331 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~ 331 (599)
...|||..|.+.|.+.++|+.|.++|.||+.|+.|+
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~ 90 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR 90 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence 467999999999999999999999999999999987
No 71
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=7.1e-05 Score=75.47 Aligned_cols=55 Identities=33% Similarity=0.570 Sum_probs=48.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHH-hcCC
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE-VLSD 65 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYe-VLsD 65 (599)
+.+|.||||...|+.++++.||..|++.+|||.. +.+...+.|++|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsg-----s~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSG-----SEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-----CccccHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999998 23446789999999999 8873
No 72
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=97.00 E-value=0.00063 Score=73.00 Aligned_cols=39 Identities=38% Similarity=0.635 Sum_probs=35.2
Q ss_pred hccCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551 294 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (599)
Q Consensus 294 ~~~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~ 332 (599)
+....+||.+|+|.|.|.+++.+|++||+|+.++..+.+
T Consensus 64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r 102 (390)
T KOG2785|consen 64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR 102 (390)
T ss_pred hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence 345678999999999999999999999999999998766
No 73
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0017 Score=58.65 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=42.2
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCh
Q 007551 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66 (599)
Q Consensus 9 YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsDp 66 (599)
-.||||.++++.+.||.|+||+-+..|||+...| -.-..|++|+++|...
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--------YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--------YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--------HHHHHHHHHHHHHhcc
Confidence 3599999999999999999999999999998432 2345699999999743
No 74
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=96.54 E-value=0.001 Score=59.90 Aligned_cols=37 Identities=35% Similarity=0.741 Sum_probs=34.8
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~ 332 (599)
...+||..|.+.|.++.+|..|.++|=|++.++.|+.
T Consensus 53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe 89 (126)
T COG5112 53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE 89 (126)
T ss_pred CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence 4568999999999999999999999999999999985
No 75
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=96.20 E-value=0.0037 Score=46.60 Aligned_cols=32 Identities=38% Similarity=0.647 Sum_probs=20.5
Q ss_pred cccccccccccc--ChHHHHHhHhhHHHHHHHHH
Q 007551 298 EFYCVLCGKKFK--SEKQWTNHEQSKKHKEKVAD 329 (599)
Q Consensus 298 ~~~C~~C~K~F~--s~~~~~nH~~SKKHk~~~~~ 329 (599)
-+||..|++.|. +....++|+.+.+|+.+|++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 379999999994 34566999999999999975
No 76
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0092 Score=57.35 Aligned_cols=72 Identities=26% Similarity=0.449 Sum_probs=56.5
Q ss_pred CccCcccccCcCC--CCCHHHHHHHHHHHHHHhCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 4 EKRCLYEVLGLRK--ECTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 4 ~~~d~YeVLGV~~--~As~~eIKkAYRkLalk~HPDKn~~~~~-~~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
...+||.++|... ...+.-+.--|.-...++|||+...+.. ....|.+....|++||.+|.||-.|+.|=.-
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3567999998765 4566666668999999999999643311 2236888999999999999999999999764
No 77
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.013 Score=57.10 Aligned_cols=58 Identities=34% Similarity=0.571 Sum_probs=49.4
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCH---HHHHHHHHHHHHHHHhc
Q 007551 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQ---AEATAQFQELVHAYEVL 63 (599)
Q Consensus 6 ~d~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~---~ea~~~F~~I~~AYeVL 63 (599)
.+.|.+||+...+...+|+++|+++...+|||+-..-+... ..+.+.++.|+.||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999975444333 35889999999999753
No 78
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.10 E-value=0.015 Score=37.77 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=20.5
Q ss_pred cccccccccccChHHHHHhHhh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (599)
|.|..|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 5799999999999999999986
No 79
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.08 Score=58.59 Aligned_cols=71 Identities=7% Similarity=-0.027 Sum_probs=66.2
Q ss_pred hhhhhhhhhcceeeecccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Q 007551 160 VTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMD 231 (599)
Q Consensus 160 V~~FY~~W~~F~T~RsFsw~Deyd~~~a~nR~~RR~mEKENkK~R~k~kKE~n~~VR~LV~~vkkRDpRv~~ 231 (599)
+..||..|.+|+|.--|.|. .|...-...+..++.|.+.+..++....+.-+..|++++.++++++.|+..
T Consensus 133 d~~~~ap~fg~~~t~ye~~~-~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyN 203 (508)
T KOG0717|consen 133 DSKLLYPLFGYSTTDYEQVV-PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYN 203 (508)
T ss_pred CCccccccccCCCCcHHHHH-HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999 888888899999999999999999999999999999999999999999865
No 80
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.93 E-value=0.032 Score=62.26 Aligned_cols=49 Identities=37% Similarity=0.501 Sum_probs=36.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHH---HHHHHHHHHHHHHHh
Q 007551 14 LRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEV 62 (599)
Q Consensus 14 V~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~---ea~~~F~~I~~AYeV 62 (599)
|..-.+..+||++|||.+|..||||.+..|.... .|.+.|-.+++|+..
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 4445789999999999999999999976554332 366666666666653
No 81
>PLN02748 tRNA dimethylallyltransferase
Probab=94.92 E-value=0.019 Score=64.18 Aligned_cols=37 Identities=24% Similarity=0.804 Sum_probs=33.4
Q ss_pred cCccccccccc-cccChHHHHHhHhhHHHHHHHHHHHH
Q 007551 296 RSEFYCVLCGK-KFKSEKQWTNHEQSKKHKEKVADLRE 332 (599)
Q Consensus 296 ~~~~~C~~C~K-~F~s~~~~~nH~~SKKHk~~~~~l~~ 332 (599)
...|+|.+|++ +|..+.+|..|++|++|+++++.+++
T Consensus 416 ~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k 453 (468)
T PLN02748 416 WTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ 453 (468)
T ss_pred cccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence 35568999997 89999999999999999999998864
No 82
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=93.57 E-value=0.04 Score=58.91 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=46.8
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHHHH------------hhhhhhHhhhccCCchhhhhhhhhhhc
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES------------FVDEDEVMADFGELDGEVEELGERFKD 360 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~------------~~~e~~~~~~~~~~~~~~~~~~e~~~e 360 (599)
...+||+.|.+-|+..+.|..|+.+|-|.++++..+.- ++.+.-.-+...+.+.-+.+..|++.+
T Consensus 236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER~ae 312 (470)
T COG5188 236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKERKAE 312 (470)
T ss_pred ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999876651 112222223344555566666677654
No 83
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=93.39 E-value=0.052 Score=34.66 Aligned_cols=22 Identities=36% Similarity=0.922 Sum_probs=18.3
Q ss_pred cccccccccccChHHHHHhHhh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (599)
|.|..|++.|.+..+|..|+.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 5799999999999999999875
No 84
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=93.23 E-value=0.05 Score=36.63 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.8
Q ss_pred ccccccccccccChHHHHHhHhh
Q 007551 298 EFYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~S 320 (599)
.|.|..|++.|.+..+|..|.++
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCCccCCccCChhHHHHHhHH
Confidence 37899999999999999999864
No 85
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.061 Score=52.46 Aligned_cols=69 Identities=29% Similarity=0.402 Sum_probs=54.2
Q ss_pred CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCC-HHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Q 007551 7 CLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLS-QAEATAQFQELVHAYEVLSDPKERAWYDSH 75 (599)
Q Consensus 7 d~YeVLGV~~~A--s~~eIKkAYRkLalk~HPDKn~~~~~~-~~ea~~~F~~I~~AYeVLsDp~kR~~YDs~ 75 (599)
+|+.++|+.+.+ ..+.++..|+.+.+.+|||+....+.. ...+...+..++.||.+|-||-.|+.|=..
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 466667777654 445689999999999999998644321 223678999999999999999999999764
No 86
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=93.01 E-value=0.058 Score=52.59 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=31.6
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHH
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l 330 (599)
..-|||.+|+=+|+---+|.-|++-|+|..++--+
T Consensus 73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms 107 (193)
T KOG4727|consen 73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS 107 (193)
T ss_pred cCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence 45689999999999999999999999999987654
No 87
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=91.38 E-value=0.069 Score=45.61 Aligned_cols=31 Identities=35% Similarity=0.724 Sum_probs=26.4
Q ss_pred ccccccccccccChHHHHHhHhhHHHHHHHH
Q 007551 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 328 (599)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~ 328 (599)
.+.|..|++.|.+..+|..|++++.|.....
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 5899999999999999999999999987654
No 88
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=0.17 Score=51.48 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=33.5
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~ 332 (599)
...+.|.+|+--.+ .+-|..|.+||||+.+|..|+.
T Consensus 33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs 68 (264)
T KOG3032|consen 33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS 68 (264)
T ss_pred CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence 46689999999999 9999999999999999999993
No 89
>smart00355 ZnF_C2H2 zinc finger.
Probab=90.06 E-value=0.24 Score=31.75 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=19.6
Q ss_pred cccccccccccChHHHHHhHh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQ 319 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~ 319 (599)
+.|..|++.|.+...|..|++
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 469999999999999999987
No 90
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=87.29 E-value=0.19 Score=42.81 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=26.3
Q ss_pred CchhhhhcccchhhhhhhhhhcCCCCcccc
Q 007551 568 SNVCEKCGQEFETRNKLHKHLGDTGHASLK 597 (599)
Q Consensus 568 ~~~c~~c~~~f~sr~kl~~hl~~~gh~~~k 597 (599)
.+.|..|+..|.|+..|..||...||..+.
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~ 79 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRN 79 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence 689999999999999999999999998763
No 91
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=87.18 E-value=0.17 Score=52.72 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=32.5
Q ss_pred ccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (599)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~ 332 (599)
-|||..|.|.|..+|.|+-|..|-.|.+.+.++..
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~ 59 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFAL 59 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHHHHHHHHh
Confidence 38999999999999999999999999999988763
No 92
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=84.47 E-value=0.58 Score=36.96 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=24.1
Q ss_pred CccccccccccccChHHHHHhHhhHHHHHHH
Q 007551 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327 (599)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~ 327 (599)
..-||..|...|.+ |..|..|.+|+.-+
T Consensus 4 k~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 4 KPGYCENCRVKYDD---LEEHIQSEKHRKFA 31 (49)
T ss_pred CCccCccccchhhh---HHHHhCCHHHHHHH
Confidence 34599999999985 89999999999755
No 93
>PHA02768 hypothetical protein; Provisional
Probab=84.44 E-value=0.59 Score=37.80 Aligned_cols=24 Identities=25% Similarity=0.688 Sum_probs=22.4
Q ss_pred cccccccccccChHHHHHhHhhHHHH
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQSKKHK 324 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SKKHk 324 (599)
|.|..|+|.|....+|..|+++ |.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~--H~ 29 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRK--HN 29 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHh--cC
Confidence 6899999999999999999987 66
No 94
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=84.09 E-value=0.61 Score=36.88 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=24.9
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHH
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 328 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~ 328 (599)
...-||..|...|. .|..|..|++|+.=..
T Consensus 3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~ 32 (49)
T smart00586 3 KKPGYCENCREKYD---DLETHLLSEKHRRFAE 32 (49)
T ss_pred CCCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence 34579999999997 5888999999997544
No 95
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=83.88 E-value=0.46 Score=30.60 Aligned_cols=20 Identities=30% Similarity=0.919 Sum_probs=18.5
Q ss_pred hhhhhcccchhhhhhhhhhc
Q 007551 570 VCEKCGQEFETRNKLHKHLG 589 (599)
Q Consensus 570 ~c~~c~~~f~sr~kl~~hl~ 589 (599)
.|+.||..|.++..|-.|+.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHh
Confidence 59999999999999999975
No 96
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=81.40 E-value=0.66 Score=29.41 Aligned_cols=20 Identities=30% Similarity=0.913 Sum_probs=16.5
Q ss_pred hhhhhcccchhhhhhhhhhc
Q 007551 570 VCEKCGQEFETRNKLHKHLG 589 (599)
Q Consensus 570 ~c~~c~~~f~sr~kl~~hl~ 589 (599)
.|+-||..|.++..|-.|+.
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHH
Confidence 59999999999999999985
No 97
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=80.78 E-value=2.3 Score=39.97 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=35.1
Q ss_pred cccccCcCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007551 8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (599)
Q Consensus 8 ~YeVLGV~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLs 64 (599)
-..||||++.++.++|.+.|.+|-...+|++.. ..-.=..|..|.+.|.
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--------SfYLQSKV~rAKErl~ 108 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGG--------SFYLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--------CHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999872 2344456777888775
No 98
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=80.35 E-value=1.7 Score=44.25 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=29.7
Q ss_pred CccccccccccccChHHHHHhHhhHHHHHHHHHHHHHh
Q 007551 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (599)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~~ 334 (599)
.-|-|..|.|.|+-..=+..|+. +||-+.|..+++++
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~~ev 112 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVKKEV 112 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHHHHH
T ss_pred CEECCCCCCcccCChHHHHHHHh-hcCHHHHHHHHHHH
Confidence 45899999999999999999987 67999999887655
No 99
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=80.08 E-value=0.77 Score=30.76 Aligned_cols=20 Identities=30% Similarity=0.811 Sum_probs=18.7
Q ss_pred hhhhhcccchhhhhhhhhhc
Q 007551 570 VCEKCGQEFETRNKLHKHLG 589 (599)
Q Consensus 570 ~c~~c~~~f~sr~kl~~hl~ 589 (599)
.|..|+..|.+...|..|+.
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKR 22 (27)
T ss_dssp EETTTTEEESSHHHHHHHHC
T ss_pred CCCccCCccCChhHHHHHhH
Confidence 59999999999999999984
No 100
>PHA00616 hypothetical protein
Probab=76.81 E-value=1.3 Score=34.35 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=20.2
Q ss_pred cccccccccccChHHHHHhHhh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (599)
+-|.-|++.|....+|..|+++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 6799999999999999999954
No 101
>smart00355 ZnF_C2H2 zinc finger.
Probab=74.49 E-value=1.1 Score=28.50 Aligned_cols=20 Identities=30% Similarity=0.906 Sum_probs=18.8
Q ss_pred hhhhhcccchhhhhhhhhhc
Q 007551 570 VCEKCGQEFETRNKLHKHLG 589 (599)
Q Consensus 570 ~c~~c~~~f~sr~kl~~hl~ 589 (599)
.|..|+..|.++..|..|+.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH
Confidence 59999999999999999987
No 102
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=71.47 E-value=1.1 Score=30.41 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=20.9
Q ss_pred chhhhhcccchhhhhhhhhhcCCC
Q 007551 569 NVCEKCGQEFETRNKLHKHLGDTG 592 (599)
Q Consensus 569 ~~c~~c~~~f~sr~kl~~hl~~~g 592 (599)
..|+.|+..|.+.+-|-.||....
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~ 25 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKK 25 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCC
Confidence 469999999999999999997543
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.95 E-value=17 Score=43.24 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=9.8
Q ss_pred hcccchhhhhhhhhhcCCCCc
Q 007551 574 CGQEFETRNKLHKHLGDTGHA 594 (599)
Q Consensus 574 c~~~f~sr~kl~~hl~~~gh~ 594 (599)
|---|.-|.|---||+=+-|-
T Consensus 816 ~iA~y~wrakke~dLsFskgd 836 (1118)
T KOG1029|consen 816 AIALYPWRAKKENDLSFSKGD 836 (1118)
T ss_pred HHhhccccccccccccccCCC
Confidence 333455555555555444443
No 104
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=69.93 E-value=3.6 Score=27.84 Aligned_cols=21 Identities=33% Similarity=0.828 Sum_probs=18.0
Q ss_pred cccccccccccChHHHHHhHhh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (599)
..|..|++.| ...++..|++.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4799999999 88899999763
No 105
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=69.83 E-value=5.6 Score=38.87 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=30.9
Q ss_pred ccccccccccc--cChHHHHHhHhhHHHHHHHHHHHHHhh
Q 007551 298 EFYCVLCGKKF--KSEKQWTNHEQSKKHKEKVADLRESFV 335 (599)
Q Consensus 298 ~~~C~~C~K~F--~s~~~~~nH~~SKKHk~~~~~l~~~~~ 335 (599)
-|||..|+..- -|-..-+.|+..+||+++|+-.=+++.
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~ 42 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWM 42 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 37999999644 356778999999999999998866655
No 106
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=68.65 E-value=48 Score=34.02 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=13.4
Q ss_pred hcChhhhhHHHHhHHHHHHH
Q 007551 224 KRDKRVMDMMVKKNEEIERK 243 (599)
Q Consensus 224 kRDpRv~~~~~~~~~e~erk 243 (599)
.||||++.+++++..++.++
T Consensus 175 prdprF~eml~~kEkeeKKk 194 (217)
T PF10147_consen 175 PRDPRFQEMLQEKEKEEKKK 194 (217)
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 68999998876554444433
No 107
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=68.56 E-value=1.3 Score=29.08 Aligned_cols=22 Identities=32% Similarity=0.807 Sum_probs=19.8
Q ss_pred hhhhhcccchhhhhhhhhhcCC
Q 007551 570 VCEKCGQEFETRNKLHKHLGDT 591 (599)
Q Consensus 570 ~c~~c~~~f~sr~kl~~hl~~~ 591 (599)
.|+.|+..|-|.+-|-.||.--
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCcCCHHHHHHHHCcC
Confidence 5999999999999999999743
No 108
>PHA02768 hypothetical protein; Provisional
Probab=64.17 E-value=3.3 Score=33.57 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.7
Q ss_pred CCchhhhhcccchhhhhhhhhhcC
Q 007551 567 SSNVCEKCGQEFETRNKLHKHLGD 590 (599)
Q Consensus 567 ~~~~c~~c~~~f~sr~kl~~hl~~ 590 (599)
+|-.|+.||..|-.+.-|-.|+.-
T Consensus 4 ~~y~C~~CGK~Fs~~~~L~~H~r~ 27 (55)
T PHA02768 4 LGYECPICGEIYIKRKSMITHLRK 27 (55)
T ss_pred cccCcchhCCeeccHHHHHHHHHh
Confidence 577899999999999999999875
No 109
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=61.89 E-value=5.6 Score=39.87 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=33.7
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHHHHHh
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 334 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~~ 334 (599)
...|.|..|.-.-.|+.+|..|...|||..+|++-....
T Consensus 51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~e 89 (222)
T KOG0227|consen 51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKE 89 (222)
T ss_pred CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHHH
Confidence 356899999999999999999999999999988655443
No 110
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=54.97 E-value=7.1 Score=38.87 Aligned_cols=35 Identities=31% Similarity=0.658 Sum_probs=31.8
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHHHHH
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l 330 (599)
..-|.|..|.-.-.|++++..|...|||+.++.+-
T Consensus 51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence 45689999999999999999999999999998754
No 111
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=52.88 E-value=44 Score=33.70 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=13.6
Q ss_pred HHhcChhhhhHHHHhHHHHHH
Q 007551 222 VKKRDKRVMDMMVKKNEEIER 242 (599)
Q Consensus 222 vkkRDpRv~~~~~~~~~e~er 242 (599)
|--||||+..+++++..++.+
T Consensus 184 vDprd~RF~emLqqkEkeekK 204 (225)
T KOG4848|consen 184 VDPRDPRFEEMLQQKEKEEKK 204 (225)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 337899998877655444433
No 112
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=52.54 E-value=5.2 Score=43.28 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=28.8
Q ss_pred hccCccccccccccccChHHHHHhHhhHHHHH
Q 007551 294 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKE 325 (599)
Q Consensus 294 ~~~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~ 325 (599)
+.-+-+.|..|.|.|...+.+.-|++-|.|++
T Consensus 191 ekL~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 191 EKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred HHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 44567899999999999999999999999984
No 113
>PF13446 RPT: A repeated domain in UCH-protein
Probab=51.14 E-value=27 Score=28.13 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.7
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHH
Q 007551 7 CLYEVLGLRKECTTDEIRSAYKKLAL 32 (599)
Q Consensus 7 d~YeVLGV~~~As~~eIKkAYRkLal 32 (599)
.-|.+|||+++++.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998777
No 114
>PHA00732 hypothetical protein
Probab=50.31 E-value=10 Score=32.66 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.7
Q ss_pred cccccccccccChHHHHHhHhh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (599)
|.|..|++.|.+...+..|.+.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 5799999999999999999763
No 115
>PHA00616 hypothetical protein
Probab=48.17 E-value=7.6 Score=30.14 Aligned_cols=19 Identities=32% Similarity=0.830 Sum_probs=18.0
Q ss_pred hhhhhcccchhhhhhhhhh
Q 007551 570 VCEKCGQEFETRNKLHKHL 588 (599)
Q Consensus 570 ~c~~c~~~f~sr~kl~~hl 588 (599)
-|..||..|-.+.-|-.||
T Consensus 3 qC~~CG~~F~~~s~l~~H~ 21 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHL 21 (44)
T ss_pred ccchhhHHHhhHHHHHHHH
Confidence 4999999999999999998
No 116
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=47.30 E-value=8.6 Score=25.99 Aligned_cols=14 Identities=36% Similarity=0.992 Sum_probs=12.0
Q ss_pred CccccccccccccC
Q 007551 297 SEFYCVLCGKKFKS 310 (599)
Q Consensus 297 ~~~~C~~C~K~F~s 310 (599)
..|.|..|+|.|.+
T Consensus 13 k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 13 KPYKCPYCGKSFSN 26 (26)
T ss_dssp SSEEESSSSEEESS
T ss_pred CCCCCCCCcCeeCc
Confidence 45899999999975
No 117
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=46.79 E-value=9.2 Score=26.86 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=21.6
Q ss_pred CchhhhhcccchhhhhhhhhhcCCCC
Q 007551 568 SNVCEKCGQEFETRNKLHKHLGDTGH 593 (599)
Q Consensus 568 ~~~c~~c~~~f~sr~kl~~hl~~~gh 593 (599)
...|+.|+..|.+..-|-.||.---|
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H 28 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKH 28 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHH
Confidence 56899999999999999999865433
No 118
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=45.97 E-value=33 Score=31.53 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007551 16 KECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (599)
Q Consensus 16 ~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLsD 65 (599)
+..+..+++.|.|.+-++.|||.....+........-++.|+.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 35677889999999999999998743322233345667777766666653
No 119
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=39.53 E-value=28 Score=37.42 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=29.0
Q ss_pred CccccccccccccC-hHHHHHhHhhHHHHHHHHHHHH
Q 007551 297 SEFYCVLCGKKFKS-EKQWTNHEQSKKHKEKVADLRE 332 (599)
Q Consensus 297 ~~~~C~~C~K~F~s-~~~~~nH~~SKKHk~~~~~l~~ 332 (599)
.-.||.+|.--|++ ..+..+|++.|.|+.+|++--.
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Krit 45 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRIT 45 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHHH
Confidence 34689999887765 4578899999999999987543
No 120
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=39.31 E-value=22 Score=24.39 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=17.1
Q ss_pred cccccccccccChHHHHHhHh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQ 319 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~ 319 (599)
..|++|++.+ +..++..|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 4699999999 7788888876
No 121
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=38.51 E-value=16 Score=37.67 Aligned_cols=24 Identities=33% Similarity=0.857 Sum_probs=21.7
Q ss_pred cCccccccccccccChHHHHHhHh
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQ 319 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~ 319 (599)
.+.|||.-|+-.|++.-.|..|+-
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehCP 260 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHCP 260 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhCC
Confidence 478999999999999999999973
No 122
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=37.08 E-value=9.2 Score=38.62 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=27.8
Q ss_pred ccCccccccccccccChHHHHHhHhhHHHHHHHHHH
Q 007551 295 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (599)
Q Consensus 295 ~~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l 330 (599)
....|||.+|+..|. .+.+.||..|--|.-++..+
T Consensus 81 ~e~lfyCE~Cd~~ip-~~~~snH~tSttHllsl~~~ 115 (223)
T KOG2384|consen 81 DEALFYCEVCDIYIP-NSKKSNHFTSTTHLLSLQHI 115 (223)
T ss_pred CCccchhhhhhhhcc-CCCCccchhhHHHHhhhccC
Confidence 346799999987665 56789999999998776644
No 123
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=35.37 E-value=11 Score=44.54 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=27.1
Q ss_pred CccccccccccccChHHHHHhHhhHHHHH
Q 007551 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKE 325 (599)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~ 325 (599)
..|.|..|.|.|..-..|-.|+.|||-..
T Consensus 308 KPfeCpnCkKRFSHSGSySSHmSSKKCIs 336 (1007)
T KOG3623|consen 308 KPFECPNCKKRFSHSGSYSSHMSSKKCIS 336 (1007)
T ss_pred CCcCCcccccccccCCcccccccccchhh
Confidence 57999999999999999999999999883
No 124
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=34.69 E-value=48 Score=34.45 Aligned_cols=30 Identities=10% Similarity=-0.018 Sum_probs=18.8
Q ss_pred hHHHHHHHhhccccccccccccccccccccc
Q 007551 416 EVNMLKAMLSGHKNRKRVAVRKEDEVLKTEA 446 (599)
Q Consensus 416 e~~~le~m~s~~k~~~~~~~~~~~~~~~~~~ 446 (599)
=+--|.-|-..|. +.++....+.|-.|...
T Consensus 141 YCKRLrvlCpEH~-K~pkv~~~~VCG~Pl~~ 170 (236)
T PF12269_consen 141 YCKRLRVLCPEHS-KEPKVPDTEVCGCPLVR 170 (236)
T ss_pred HHHHHHHhCcccc-CCCCCCcccccCCcccc
Confidence 4566777777553 44555566777767665
No 125
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=34.31 E-value=18 Score=29.68 Aligned_cols=26 Identities=31% Similarity=0.646 Sum_probs=22.1
Q ss_pred CccccccccccccChHHHHHhHhhHHH
Q 007551 297 SEFYCVLCGKKFKSEKQWTNHEQSKKH 323 (599)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SKKH 323 (599)
.-|.|+-|++.|.-.+.|..|.+ |.|
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVN-KaH 41 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVN-KAH 41 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhh-HHh
Confidence 45799999999999999999986 344
No 126
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=33.35 E-value=35 Score=26.82 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.8
Q ss_pred ccccccccccccChHHHHHhHhh
Q 007551 298 EFYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~S 320 (599)
.|-|+.|++ -.+...|..|...
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~ 23 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCED 23 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHh
Confidence 478999999 5778889998764
No 127
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=33.14 E-value=15 Score=40.07 Aligned_cols=21 Identities=43% Similarity=0.891 Sum_probs=19.0
Q ss_pred chhhhhcccchhhhhhhhhhc
Q 007551 569 NVCEKCGQEFETRNKLHKHLG 589 (599)
Q Consensus 569 ~~c~~c~~~f~sr~kl~~hl~ 589 (599)
.-|.+||+-|-.|.||+.||-
T Consensus 208 vACp~Cg~~F~~~tkl~DH~r 228 (467)
T KOG3608|consen 208 VACPHCGELFRTKTKLFDHLR 228 (467)
T ss_pred EecchHHHHhccccHHHHHHH
Confidence 459999999999999999984
No 128
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=33.04 E-value=8.4 Score=27.20 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=14.4
Q ss_pred cccccccccccChHHHHHhH
Q 007551 299 FYCVLCGKKFKSEKQWTNHE 318 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~ 318 (599)
|.|+-|.+.| +...+++|-
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 5699999999 777788774
No 129
>PTZ00448 hypothetical protein; Provisional
Probab=32.72 E-value=35 Score=37.51 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=32.1
Q ss_pred CccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551 297 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (599)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~ 332 (599)
..|.|..|+-.|.+...+..|.+|-=|+=++++--.
T Consensus 313 ~~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~ 348 (373)
T PTZ00448 313 NMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNAR 348 (373)
T ss_pred CCccccccccccCCHHHHHHHhhhhHHHHHHHHHhc
Confidence 357899999999999999999999999999886544
No 130
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=32.45 E-value=46 Score=32.73 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=32.2
Q ss_pred cccccccccccChHHHHHhHhhHHHHHHHHHHHHHhhh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFVD 336 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~~~~ 336 (599)
|.|..|.=.=-.+..+..|+.|+=|++-+..|.-++-+
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k 38 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPK 38 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCCh
Confidence 67999987777899999999999999999988655443
No 131
>PF14968 CCDC84: Coiled coil protein 84
Probab=32.09 E-value=25 Score=38.19 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=27.7
Q ss_pred ccccccccccChHHHHHhHhhHHHHHHHHHHHHHhh
Q 007551 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFV 335 (599)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~~~ 335 (599)
||.+|+..+-. ...|.=|.+|++.+..+...+.
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf~ 33 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRFR 33 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHHHHHHHH
Confidence 89999998765 8999999999999988754443
No 132
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=29.49 E-value=74 Score=32.00 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007551 15 RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (599)
Q Consensus 15 ~~~As~~eIKkAYRkLalk~HPDKn~~~~~~~~ea~~~F~~I~~AYeVLs 64 (599)
+++|+.+||..|+.+|..+|--|.. .-..|-.||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~------------~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEK------------SREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHH------------HHHHHHHHHHHHH
Confidence 4789999999999999999933332 3445888998765
No 133
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=28.70 E-value=1e+02 Score=34.72 Aligned_cols=15 Identities=7% Similarity=0.434 Sum_probs=6.8
Q ss_pred hhcceeeeccccccc
Q 007551 167 WLGFSTVMDFCWVDE 181 (599)
Q Consensus 167 W~~F~T~RsFsw~De 181 (599)
|.-..|+--+-+++.
T Consensus 261 wtl~Qq~i~~~~l~~ 275 (429)
T PRK00247 261 WTLIQNIIMYLILER 275 (429)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445544444553
No 134
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.24 E-value=31 Score=36.48 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=23.7
Q ss_pred cCccccccccccccChHHHHHhHhhHH
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKK 322 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKK 322 (599)
...+.|..|+|.|.|+-+|+-|+++=.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~ 185 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT 185 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC
Confidence 567899999999999999999998743
No 135
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=27.74 E-value=23 Score=37.41 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=20.6
Q ss_pred CccccccccccccChHHHHHhHhh
Q 007551 297 SEFYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~S 320 (599)
..|-|..|+|.|.-..-|..|+++
T Consensus 214 KPF~C~hC~kAFADRSNLRAHmQT 237 (279)
T KOG2462|consen 214 KPFSCPHCGKAFADRSNLRAHMQT 237 (279)
T ss_pred CCccCCcccchhcchHHHHHHHHh
Confidence 568899999999999888888875
No 136
>PHA00733 hypothetical protein
Probab=27.61 E-value=41 Score=31.42 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=20.7
Q ss_pred ccccccccccccChHHHHHhHhhHHH
Q 007551 298 EFYCVLCGKKFKSEKQWTNHEQSKKH 323 (599)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SKKH 323 (599)
.+.|..|+|.|.+...|..|.. ++|
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~-~~h 123 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVC-KKH 123 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHH-Hhc
Confidence 4789999999999999999964 444
No 137
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=26.60 E-value=34 Score=25.48 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=16.0
Q ss_pred cCccccccccccccCh----HHHHHhHh
Q 007551 296 RSEFYCVLCGKKFKSE----KQWTNHEQ 319 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~----~~~~nH~~ 319 (599)
.....|..|++.|+.. +.|..|++
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 3456899999999874 88999984
No 138
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=26.38 E-value=22 Score=39.29 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=23.9
Q ss_pred cCccccccccccccChHHHHHhHhhHHHHHHH
Q 007551 296 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 327 (599)
Q Consensus 296 ~~~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~ 327 (599)
.-.-||..|.-.|.+ |+.|..|++|++-.
T Consensus 420 tk~GYCENCreky~~---lE~Hi~s~~HrrFA 448 (468)
T COG5067 420 TKKGYCENCREKYES---LEQHIVSEKHRRFA 448 (468)
T ss_pred cccchhHHHHHHHHH---HHHHhhhhhhhhhh
Confidence 344699999999975 88999999999643
No 139
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=25.85 E-value=3.5e+02 Score=33.93 Aligned_cols=11 Identities=9% Similarity=-0.115 Sum_probs=4.4
Q ss_pred cccccccccCh
Q 007551 301 CVLCGKKFKSE 311 (599)
Q Consensus 301 C~~C~K~F~s~ 311 (599)
|..|.-.-.+.
T Consensus 563 ~~~~~~~~~~~ 573 (1021)
T PTZ00266 563 RNHSGVRSGIH 573 (1021)
T ss_pred CCccccccccc
Confidence 44444433333
No 140
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=25.45 E-value=5.7e+02 Score=29.07 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=28.8
Q ss_pred ccccccccccChHHHHHhHhhHHHHHHHHHH
Q 007551 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 330 (599)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l 330 (599)
.|..|+-...|+--|-.|.+.+||...|..|
T Consensus 495 qcslcnvlissevylfshvkgrkhqqal~e~ 525 (672)
T KOG4722|consen 495 QCSLCNVLISSEVYLFSHVKGRKHQQALNEL 525 (672)
T ss_pred ccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence 6999999999999999999999999988754
No 141
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=24.65 E-value=56 Score=36.11 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=31.4
Q ss_pred ccccccccccccChHHHHHhHhhHHHHHHHHHHHH
Q 007551 298 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 332 (599)
Q Consensus 298 ~~~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~ 332 (599)
.|.|..|...|.+.-.-..|.+|-=|+=+|++--.
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA 37 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVA 37 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhh
Confidence 47899999999999999999999999998886544
No 142
>PHA00733 hypothetical protein
Probab=24.41 E-value=48 Score=30.98 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.4
Q ss_pred CccccccccccccChHHHHHhHhh
Q 007551 297 SEFYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 297 ~~~~C~~C~K~F~s~~~~~nH~~S 320 (599)
..|.|..|++.|.+...|..|...
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~ 95 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRY 95 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhc
Confidence 458999999999999999999874
No 143
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=24.01 E-value=1.1e+02 Score=32.73 Aligned_cols=19 Identities=26% Similarity=0.740 Sum_probs=11.2
Q ss_pred CCCCCCCCCCccchhhhHH
Q 007551 105 FSGYSDSGKGFYKVYSDLF 123 (599)
Q Consensus 105 f~gf~d~~~gFy~vy~~vF 123 (599)
|.||+-++.-||..|-.+.
T Consensus 212 ~~gfg~g~dlffeayvqfm 230 (445)
T KOG2891|consen 212 FHGFGFGGDLFFEAYVQFM 230 (445)
T ss_pred eeccccCcchhHHHHHHHH
Confidence 5566666666766665433
No 144
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=23.97 E-value=37 Score=40.92 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=20.8
Q ss_pred cccccccccccChHHHHHhHhh
Q 007551 299 FYCVLCGKKFKSEKQWTNHEQS 320 (599)
Q Consensus 299 ~~C~~C~K~F~s~~~~~nH~~S 320 (599)
.+|.+|+|.|.+..+|+.|++.
T Consensus 880 h~C~vCgk~FsSSsALqiH~rT 901 (958)
T KOG1074|consen 880 HVCNVCGKQFSSSAALEIHMRT 901 (958)
T ss_pred hhhccchhcccchHHHHHhhhc
Confidence 5899999999999999999986
No 145
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.17 E-value=73 Score=25.05 Aligned_cols=31 Identities=35% Similarity=0.695 Sum_probs=16.8
Q ss_pred ccccccccccChHHHHHhHhhHHHHHHHHHHHHH
Q 007551 300 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 333 (599)
Q Consensus 300 ~C~~C~K~F~s~~~~~nH~~SKKHk~~~~~l~~~ 333 (599)
-|++|+..|..+.. ..-.+++...+..+..+
T Consensus 22 ~CPlC~r~l~~e~~---~~li~~~~~~i~~~~~~ 52 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR---QELIKKYKSEIEELPEK 52 (54)
T ss_dssp E-TTT--EE-HHHH---HHHHHHHHHHHHHHHH-
T ss_pred cCCCCCCCCCHHHH---HHHHHHHHHHHHhhhhc
Confidence 79999999988766 44445555555555444
No 146
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.31 E-value=5.9e+02 Score=31.21 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 007551 192 SRRVMEEENKKLR 204 (599)
Q Consensus 192 ~RR~mEKENkK~R 204 (599)
-|+.|+.+.++.|
T Consensus 332 RRq~leeqqqrer 344 (1118)
T KOG1029|consen 332 RRQALEEQQQRER 344 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 3555655555544
Done!