Query 007552
Match_columns 599
No_of_seqs 348 out of 2715
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 12:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 3E-126 6E-131 934.1 58.1 583 13-599 66-663 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 9E-98 2E-102 834.9 70.0 569 10-580 31-617 (653)
3 PRK13411 molecular chaperone D 100.0 1.3E-93 2.8E-98 800.5 67.3 556 10-581 29-605 (653)
4 KOG0101 Molecular chaperones H 100.0 1.4E-95 3E-100 774.3 47.8 565 10-578 34-615 (620)
5 PTZ00400 DnaK-type molecular c 100.0 2.5E-93 5.4E-98 798.4 67.9 551 10-578 68-639 (663)
6 PTZ00186 heat shock 70 kDa pre 100.0 4.1E-93 8.8E-98 790.5 67.9 557 10-582 54-630 (657)
7 PLN03184 chloroplast Hsp70; Pr 100.0 9.8E-93 2.1E-97 793.8 68.5 559 10-586 66-645 (673)
8 PRK13410 molecular chaperone D 100.0 6.3E-93 1.4E-97 792.6 65.5 556 10-577 29-607 (668)
9 PRK00290 dnaK molecular chaper 100.0 1.3E-91 2.9E-96 785.1 69.1 551 10-580 29-600 (627)
10 TIGR02350 prok_dnaK chaperone 100.0 5.4E-90 1.2E-94 769.7 66.4 548 10-576 27-594 (595)
11 CHL00094 dnaK heat shock prote 100.0 1.1E-89 2.4E-94 767.3 67.4 550 10-577 29-599 (621)
12 TIGR01991 HscA Fe-S protein as 100.0 1.1E-87 2.4E-92 746.5 67.1 544 10-578 26-586 (599)
13 PRK05183 hscA chaperone protei 100.0 5.5E-86 1.2E-90 734.4 66.3 540 10-577 46-601 (616)
14 KOG0102 Molecular chaperones m 100.0 5.3E-88 1.2E-92 687.3 44.8 561 9-584 53-634 (640)
15 PF00012 HSP70: Hsp70 protein; 100.0 1.3E-85 2.8E-90 740.4 61.3 557 10-577 26-602 (602)
16 KOG0103 Molecular chaperones H 100.0 4.7E-85 1E-89 685.1 48.0 546 14-569 32-640 (727)
17 PRK01433 hscA chaperone protei 100.0 2.3E-83 5E-88 707.1 62.3 518 10-570 46-572 (595)
18 COG0443 DnaK Molecular chapero 100.0 2.2E-79 4.9E-84 671.5 55.5 532 8-577 31-578 (579)
19 KOG0104 Molecular chaperones G 100.0 2.7E-72 5.8E-77 589.5 46.0 557 9-578 49-738 (902)
20 PRK11678 putative chaperone; P 100.0 3.4E-43 7.4E-48 375.4 33.6 258 78-343 123-447 (450)
21 PRK13928 rod shape-determining 100.0 4.6E-34 1E-38 297.9 26.9 286 16-344 27-324 (336)
22 PRK13929 rod-share determining 100.0 1E-32 2.2E-37 287.1 25.8 283 16-341 28-324 (335)
23 PRK13927 rod shape-determining 100.0 2.4E-31 5.1E-36 277.7 25.4 238 85-343 78-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 3.3E-30 7.2E-35 268.7 26.1 284 16-343 26-327 (333)
25 PRK13930 rod shape-determining 100.0 6.4E-30 1.4E-34 267.2 25.1 241 83-343 79-328 (335)
26 TIGR02529 EutJ ethanolamine ut 100.0 2.1E-29 4.6E-34 248.8 20.4 204 78-339 35-238 (239)
27 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 3.5E-27 7.6E-32 240.3 16.2 282 16-342 25-320 (326)
28 PRK15080 ethanolamine utilizat 99.9 6.6E-26 1.4E-30 227.8 22.2 205 79-341 63-267 (267)
29 COG1077 MreB Actin-like ATPase 99.9 3.3E-25 7.1E-30 217.0 20.3 287 16-345 30-333 (342)
30 TIGR01174 ftsA cell division p 99.9 1.5E-20 3.3E-25 198.9 20.6 193 119-340 159-371 (371)
31 PRK09472 ftsA cell division pr 99.8 1.1E-18 2.3E-23 187.1 20.6 194 121-342 169-387 (420)
32 COG0849 ftsA Cell division ATP 99.6 2.7E-15 5.8E-20 157.0 15.1 206 107-344 158-381 (418)
33 COG4820 EutJ Ethanolamine util 99.5 1.2E-14 2.6E-19 132.6 5.9 223 57-340 44-271 (277)
34 cd00012 ACTIN Actin; An ubiqui 99.4 2.2E-12 4.8E-17 136.8 14.5 236 83-343 75-347 (371)
35 PRK13917 plasmid segregation p 99.3 3.7E-11 8.1E-16 125.3 18.2 209 103-346 109-339 (344)
36 smart00268 ACTIN Actin. ACTIN 99.3 1.6E-11 3.5E-16 130.4 12.2 237 80-343 72-347 (373)
37 TIGR03739 PRTRC_D PRTRC system 99.2 4.4E-10 9.6E-15 116.5 16.9 206 103-341 101-318 (320)
38 PTZ00280 Actin-related protein 99.2 1.1E-09 2.3E-14 117.8 18.0 220 83-318 82-336 (414)
39 TIGR01175 pilM type IV pilus a 99.1 2.5E-09 5.5E-14 112.4 14.9 158 116-318 141-306 (348)
40 PF00022 Actin: Actin; InterP 99.0 9.5E-10 2.1E-14 117.7 10.3 248 82-344 73-368 (393)
41 PF11104 PilM_2: Type IV pilus 98.9 4.7E-09 1E-13 109.8 11.4 179 117-341 135-339 (340)
42 PTZ00281 actin; Provisional 98.9 1.6E-08 3.4E-13 107.3 14.8 215 105-343 102-350 (376)
43 PTZ00004 actin-2; Provisional 98.9 4.3E-08 9.3E-13 104.1 16.0 233 83-342 81-351 (378)
44 PTZ00452 actin; Provisional 98.8 5E-08 1.1E-12 103.3 14.4 214 105-342 101-348 (375)
45 PTZ00466 actin-like protein; P 98.8 9.9E-08 2.1E-12 101.1 16.3 232 83-342 87-353 (380)
46 PF06406 StbA: StbA protein; 98.7 5.7E-08 1.2E-12 100.5 8.9 220 87-338 76-316 (318)
47 TIGR00241 CoA_E_activ CoA-subs 98.6 1.8E-06 4E-11 86.2 15.9 170 136-340 73-248 (248)
48 KOG0679 Actin-related protein 98.5 1.8E-06 3.8E-11 87.2 14.7 116 83-208 86-202 (426)
49 PF07520 SrfB: Virulence facto 98.5 1.1E-05 2.4E-10 91.6 21.6 280 59-345 393-836 (1002)
50 COG4972 PilM Tfp pilus assembl 98.3 1.3E-05 2.8E-10 80.0 15.0 154 120-318 151-311 (354)
51 COG5277 Actin and related prot 98.1 3.5E-05 7.5E-10 82.6 12.6 97 105-208 107-204 (444)
52 PF08841 DDR: Diol dehydratase 97.9 7.6E-05 1.6E-09 72.8 10.8 190 128-341 106-329 (332)
53 KOG0797 Actin-related protein 97.6 0.00048 1E-08 72.3 11.6 122 77-207 195-322 (618)
54 COG4457 SrfB Uncharacterized p 97.6 0.0077 1.7E-07 65.3 20.2 85 256-345 742-848 (1014)
55 PRK10719 eutA reactivating fac 97.6 0.00025 5.5E-09 75.0 9.2 159 104-307 88-268 (475)
56 TIGR03192 benz_CoA_bzdQ benzoy 97.6 0.0065 1.4E-07 61.2 18.3 46 297-343 242-288 (293)
57 TIGR03286 methan_mark_15 putat 97.4 0.0012 2.6E-08 69.1 11.0 45 297-342 358-402 (404)
58 TIGR02261 benz_CoA_red_D benzo 97.4 0.0093 2E-07 59.2 16.4 72 267-341 187-262 (262)
59 KOG0676 Actin and related prot 97.3 0.0023 4.9E-08 66.6 12.2 216 105-342 100-345 (372)
60 COG1924 Activator of 2-hydroxy 97.3 0.0056 1.2E-07 62.8 14.5 73 266-343 317-390 (396)
61 TIGR02259 benz_CoA_red_A benzo 97.2 0.0072 1.6E-07 62.7 14.3 179 136-341 249-432 (432)
62 PRK13317 pantothenate kinase; 97.1 0.011 2.4E-07 59.7 13.7 49 294-342 222-273 (277)
63 PF02782 FGGY_C: FGGY family o 96.7 0.0018 3.9E-08 62.1 4.9 75 267-343 121-196 (198)
64 KOG0677 Actin-related protein 96.7 0.0091 2E-07 57.7 9.0 223 104-347 101-365 (389)
65 COG1069 AraB Ribulose kinase [ 96.2 0.056 1.2E-06 58.2 12.5 181 159-347 270-482 (544)
66 PLN02669 xylulokinase 96.1 0.017 3.6E-07 64.6 8.3 72 269-343 421-492 (556)
67 PF01968 Hydantoinase_A: Hydan 96.0 0.014 3E-07 59.6 6.8 69 269-340 216-284 (290)
68 PRK15027 xylulokinase; Provisi 96.0 0.015 3.2E-07 64.1 7.4 53 294-347 386-438 (484)
69 TIGR01315 5C_CHO_kinase FGGY-f 95.8 0.022 4.8E-07 63.6 7.8 86 260-347 409-494 (541)
70 PRK00047 glpK glycerol kinase; 95.3 0.042 9.1E-07 60.8 7.6 78 268-347 376-454 (498)
71 TIGR01312 XylB D-xylulose kina 95.3 0.046 9.9E-07 60.1 7.9 79 267-347 362-441 (481)
72 PRK04123 ribulokinase; Provisi 95.2 0.045 9.8E-07 61.3 7.4 77 268-346 412-489 (548)
73 TIGR01311 glycerol_kin glycero 95.2 0.043 9.4E-07 60.6 7.1 78 268-347 372-450 (493)
74 TIGR02628 fuculo_kin_coli L-fu 95.2 0.043 9.4E-07 60.1 7.0 78 268-347 366-444 (465)
75 PTZ00294 glycerol kinase-like 95.2 0.051 1.1E-06 60.2 7.6 77 269-347 380-457 (504)
76 TIGR01234 L-ribulokinase L-rib 95.1 0.053 1.2E-06 60.5 7.5 82 261-347 405-487 (536)
77 PRK10331 L-fuculokinase; Provi 95.0 0.053 1.1E-06 59.5 7.2 82 261-347 358-440 (470)
78 KOG0680 Actin-related protein 94.8 0.18 3.8E-06 50.7 9.4 97 105-206 94-198 (400)
79 PF01869 BcrAD_BadFG: BadF/Bad 94.8 1.5 3.4E-05 44.1 16.8 71 268-341 197-271 (271)
80 PLN02295 glycerol kinase 94.8 0.072 1.6E-06 59.1 7.5 79 267-347 379-463 (512)
81 PF14450 FtsA: Cell division p 94.7 0.041 9E-07 48.2 4.4 46 159-204 1-51 (120)
82 COG1070 XylB Sugar (pentulose 94.7 1.2 2.5E-05 49.4 16.8 51 292-344 399-449 (502)
83 TIGR01314 gntK_FGGY gluconate 94.7 0.074 1.6E-06 58.9 7.3 51 294-346 401-451 (505)
84 TIGR02627 rhamnulo_kin rhamnul 94.7 0.065 1.4E-06 58.5 6.7 80 262-347 357-437 (454)
85 KOG2517 Ribulose kinase and re 94.5 0.11 2.5E-06 56.1 7.8 78 268-347 387-465 (516)
86 PRK10939 autoinducer-2 (AI-2) 94.3 0.093 2E-06 58.4 7.2 52 294-347 409-460 (520)
87 KOG2531 Sugar (pentulose and h 94.2 0.13 2.7E-06 54.1 7.1 55 287-343 435-489 (545)
88 PRK10640 rhaB rhamnulokinase; 94.2 0.095 2.1E-06 57.5 6.7 76 269-347 349-425 (471)
89 TIGR00555 panK_eukar pantothen 93.9 0.5 1.1E-05 47.7 10.7 47 293-339 229-278 (279)
90 TIGR00744 ROK_glcA_fam ROK fam 93.2 11 0.00025 38.7 20.2 93 80-174 32-140 (318)
91 KOG0681 Actin-related protein 90.7 0.22 4.8E-06 53.4 3.5 66 278-343 540-614 (645)
92 COG0248 GppA Exopolyphosphatas 90.3 3 6.5E-05 45.7 11.9 96 78-175 48-147 (492)
93 PF07318 DUF1464: Protein of u 90.1 3.9 8.6E-05 42.2 11.8 70 273-347 243-319 (343)
94 PRK10854 exopolyphosphatase; P 89.6 1.8 3.9E-05 48.0 9.8 76 120-201 99-176 (513)
95 PRK09604 UGMP family protein; 89.5 29 0.00063 36.1 19.6 50 293-342 253-307 (332)
96 PRK11031 guanosine pentaphosph 89.3 1.7 3.7E-05 48.0 9.3 117 78-201 51-171 (496)
97 PF02541 Ppx-GppA: Ppx/GppA ph 88.7 0.79 1.7E-05 46.7 5.8 73 123-201 77-151 (285)
98 TIGR03706 exo_poly_only exopol 88.4 1.6 3.4E-05 44.8 7.8 115 78-201 45-164 (300)
99 PLN02666 5-oxoprolinase 87.3 7.2 0.00016 47.8 13.3 78 261-341 454-532 (1275)
100 PF02543 CmcH_NodU: Carbamoylt 87.3 34 0.00073 36.1 17.0 82 259-345 131-215 (360)
101 PRK14878 UGMP family protein; 86.9 36 0.00078 35.3 16.8 25 294-318 241-265 (323)
102 PF03702 UPF0075: Uncharacteri 84.8 2.3 4.9E-05 44.8 6.7 74 267-343 260-337 (364)
103 TIGR03281 methan_mark_12 putat 84.7 4.7 0.0001 40.8 8.4 173 138-347 129-315 (326)
104 COG0554 GlpK Glycerol kinase [ 84.5 2.9 6.2E-05 44.8 7.2 78 267-346 374-452 (499)
105 TIGR00329 gcp_kae1 metallohydr 83.5 23 0.0005 36.4 13.4 36 278-318 247-282 (305)
106 PTZ00340 O-sialoglycoprotein e 82.4 39 0.00084 35.3 14.5 25 294-318 263-287 (345)
107 PF08735 DUF1786: Putative pyr 80.6 12 0.00027 37.0 9.5 93 101-198 111-206 (254)
108 PF06277 EutA: Ethanolamine ut 80.1 4.7 0.0001 43.4 6.9 87 106-197 87-178 (473)
109 COG0145 HyuA N-methylhydantoin 80.1 1.9 4.1E-05 49.1 4.2 40 135-175 256-296 (674)
110 PRK00976 hypothetical protein; 79.6 12 0.00026 38.6 9.4 51 294-347 263-315 (326)
111 PRK09605 bifunctional UGMP fam 78.4 1.2E+02 0.0025 33.9 20.0 52 294-345 245-301 (535)
112 PRK09585 anmK anhydro-N-acetyl 77.6 9.6 0.00021 40.1 8.2 65 275-343 270-338 (365)
113 TIGR03723 bact_gcp putative gl 77.2 93 0.002 32.1 17.9 45 294-338 259-308 (314)
114 PRK03011 butyrate kinase; Prov 75.3 9.2 0.0002 40.3 7.5 47 294-340 295-344 (358)
115 cd06007 R3H_DEXH_helicase R3H 75.2 9.6 0.00021 28.7 5.5 38 95-134 7-44 (59)
116 COG0533 QRI7 Metal-dependent p 75.2 62 0.0013 33.6 13.0 51 263-318 231-285 (342)
117 COG2377 Predicted molecular ch 74.5 26 0.00056 36.5 10.1 55 290-344 286-344 (371)
118 PLN02920 pantothenate kinase 1 74.3 22 0.00047 37.6 9.7 51 292-342 295-351 (398)
119 KOG2708 Predicted metalloprote 73.1 26 0.00057 33.9 9.1 60 274-339 239-300 (336)
120 PRK09698 D-allose kinase; Prov 70.3 1.3E+02 0.0028 30.5 17.3 50 293-342 235-295 (302)
121 TIGR00143 hypF [NiFe] hydrogen 69.4 8.1 0.00018 44.5 5.8 49 294-342 658-711 (711)
122 TIGR03123 one_C_unchar_1 proba 68.4 5.2 0.00011 41.2 3.6 19 157-175 128-146 (318)
123 PRK09343 prefoldin subunit bet 66.7 88 0.0019 27.3 11.1 53 530-586 67-120 (121)
124 cd02640 R3H_NRF R3H domain of 66.5 21 0.00045 27.0 5.6 42 93-135 5-46 (60)
125 KOG0681 Actin-related protein 63.2 45 0.00097 36.5 9.3 119 78-206 90-214 (645)
126 PF15290 Syntaphilin: Golgi-lo 60.6 23 0.0005 35.2 6.1 30 490-519 78-108 (305)
127 PRK09557 fructokinase; Reviewe 60.4 2E+02 0.0043 29.2 20.2 49 293-341 243-299 (301)
128 PRK07058 acetate kinase; Provi 59.4 1.2E+02 0.0026 32.3 11.7 44 271-318 299-343 (396)
129 TIGR03722 arch_KAE1 universal 59.3 2.2E+02 0.0048 29.4 15.2 43 294-336 242-289 (322)
130 COG3426 Butyrate kinase [Energ 57.5 24 0.00052 35.3 5.7 50 290-339 292-344 (358)
131 KOG1794 N-Acetylglucosamine ki 57.2 2.3E+02 0.0049 28.9 18.0 101 59-162 20-127 (336)
132 COG2441 Predicted butyrate kin 55.1 91 0.002 31.3 9.2 57 291-347 270-336 (374)
133 COG4012 Uncharacterized protei 53.4 64 0.0014 32.1 7.8 70 136-209 208-277 (342)
134 cd02646 R3H_G-patch R3H domain 52.8 37 0.0008 25.3 4.9 41 91-134 3-43 (58)
135 KOG0797 Actin-related protein 52.3 5.9 0.00013 42.6 0.7 70 275-345 508-591 (618)
136 cd02641 R3H_Smubp-2_like R3H d 51.9 47 0.001 25.0 5.4 29 107-135 18-46 (60)
137 PF13941 MutL: MutL protein 51.8 11 0.00023 41.0 2.6 59 117-175 197-266 (457)
138 PF00349 Hexokinase_1: Hexokin 50.9 50 0.0011 31.8 6.8 25 155-179 61-85 (206)
139 PRK05082 N-acetylmannosamine k 49.4 54 0.0012 33.2 7.3 49 294-342 233-287 (291)
140 COG4296 Uncharacterized protei 48.3 46 0.001 29.2 5.4 21 542-562 91-112 (156)
141 COG2069 CdhD CO dehydrogenase/ 46.7 36 0.00078 34.2 5.0 67 105-172 251-328 (403)
142 KOG2707 Predicted metalloprote 46.6 3.7E+02 0.0079 28.2 19.1 221 84-318 81-329 (405)
143 PF08006 DUF1700: Protein of u 46.5 60 0.0013 30.4 6.6 57 508-574 5-63 (181)
144 PRK13310 N-acetyl-D-glucosamin 45.6 56 0.0012 33.3 6.7 49 293-341 244-300 (303)
145 COG1548 Predicted transcriptio 43.6 37 0.0008 33.6 4.5 21 156-176 129-149 (330)
146 PF14574 DUF4445: Domain of un 42.5 91 0.002 33.5 7.8 53 266-318 55-107 (412)
147 cd02639 R3H_RRM R3H domain of 41.6 48 0.001 25.1 4.0 30 106-135 17-46 (60)
148 PLN02377 3-ketoacyl-CoA syntha 40.5 70 0.0015 35.3 6.7 54 266-319 165-219 (502)
149 PF03484 B5: tRNA synthetase B 40.2 44 0.00095 25.9 3.8 57 32-90 9-66 (70)
150 TIGR02707 butyr_kinase butyrat 38.7 77 0.0017 33.3 6.5 46 294-339 293-341 (351)
151 PF14574 DUF4445: Domain of un 36.5 92 0.002 33.5 6.7 86 255-341 289-375 (412)
152 KOG0104 Molecular chaperones G 35.9 5.5E+02 0.012 29.8 12.5 52 526-577 774-837 (902)
153 PF00480 ROK: ROK family; Int 35.7 3.4E+02 0.0075 24.7 11.2 105 58-174 13-134 (179)
154 cd00529 RuvC_resolvase Hollida 34.7 3.3E+02 0.0072 24.7 9.3 30 158-187 1-30 (154)
155 PRK07157 acetate kinase; Provi 34.4 4.6E+02 0.01 28.0 11.4 25 294-318 320-345 (400)
156 PRK12440 acetate kinase; Revie 33.6 2.4E+02 0.0053 30.1 9.1 43 272-318 302-345 (397)
157 PF08392 FAE1_CUT1_RppA: FAE1/ 33.3 1.2E+02 0.0026 30.8 6.6 43 276-318 86-129 (290)
158 TIGR01319 glmL_fam conserved h 33.0 30 0.00065 37.4 2.3 59 117-175 193-267 (463)
159 COG2192 Predicted carbamoyl tr 31.7 7.6E+02 0.017 27.5 16.1 82 259-345 254-337 (555)
160 COG4819 EutA Ethanolamine util 31.3 19 0.00042 36.8 0.6 87 106-197 89-180 (473)
161 TIGR00067 glut_race glutamate 31.2 81 0.0018 31.4 5.0 41 294-338 172-212 (251)
162 PLN03173 chalcone synthase; Pr 30.4 1.8E+02 0.0039 31.0 7.8 47 273-319 102-149 (391)
163 smart00874 B5 tRNA synthetase 29.0 1E+02 0.0022 23.7 4.2 59 32-90 9-67 (71)
164 PF00815 Histidinol_dh: Histid 28.9 1.1E+02 0.0025 32.6 5.8 50 104-153 137-187 (412)
165 PLN03170 chalcone synthase; Pr 28.8 1.6E+02 0.0035 31.6 7.1 49 271-319 104-153 (401)
166 PF03646 FlaG: FlaG protein; 28.8 1.4E+02 0.0031 25.1 5.5 45 437-489 54-99 (107)
167 KOG0103 Molecular chaperones H 28.8 1.6E+02 0.0034 33.5 6.9 44 531-574 671-725 (727)
168 KOG1385 Nucleoside phosphatase 28.6 48 0.001 35.1 2.9 91 85-175 119-231 (453)
169 PLN02854 3-ketoacyl-CoA syntha 28.4 1.4E+02 0.0031 33.1 6.6 53 267-319 182-235 (521)
170 PLN03172 chalcone synthase fam 28.3 1.8E+02 0.0039 31.1 7.3 51 269-319 98-149 (393)
171 PF13941 MutL: MutL protein 28.0 1.3E+02 0.0029 32.7 6.2 54 159-213 2-56 (457)
172 COG3894 Uncharacterized metal- 27.5 2.9E+02 0.0063 30.3 8.4 45 158-202 165-210 (614)
173 PTZ00297 pantothenate kinase; 27.1 2.1E+02 0.0045 36.2 8.5 155 159-341 1216-1444(1452)
174 PF04614 Pex19: Pex19 protein 26.7 2.8E+02 0.0061 27.5 7.9 23 534-556 144-167 (248)
175 PF02685 Glucokinase: Glucokin 26.4 4E+02 0.0087 27.5 9.3 197 131-343 91-315 (316)
176 PRK00180 acetate kinase A/prop 26.3 2E+02 0.0044 30.8 7.1 45 272-319 304-349 (402)
177 PLN02902 pantothenate kinase 26.2 2.5E+02 0.0055 33.0 8.3 50 293-343 345-401 (876)
178 PLN03168 chalcone synthase; Pr 26.1 2.1E+02 0.0045 30.6 7.3 51 269-319 97-148 (389)
179 PF02801 Ketoacyl-synt_C: Beta 25.9 97 0.0021 26.6 4.0 45 275-319 25-71 (119)
180 PF07295 DUF1451: Protein of u 25.9 2.2E+02 0.0048 25.8 6.4 23 564-587 89-112 (146)
181 PRK14101 bifunctional glucokin 25.9 7E+02 0.015 28.5 12.1 73 269-342 244-329 (638)
182 PRK00877 hisD bifunctional his 25.8 1E+02 0.0022 33.1 4.9 49 104-153 151-200 (425)
183 PF00871 Acetate_kinase: Aceto 25.6 4E+02 0.0086 28.4 9.3 43 273-318 302-345 (388)
184 KOG2314 Translation initiation 25.6 2.7E+02 0.0057 30.9 7.7 68 510-578 582-653 (698)
185 PRK11199 tyrA bifunctional cho 25.0 7.2E+02 0.016 26.2 11.2 15 195-209 13-27 (374)
186 COG5026 Hexokinase [Carbohydra 24.7 81 0.0018 33.8 3.7 30 155-184 73-103 (466)
187 TIGR03545 conserved hypothetic 24.6 5.6E+02 0.012 28.8 10.5 106 475-585 162-277 (555)
188 PF05957 DUF883: Bacterial pro 24.4 4E+02 0.0086 21.8 7.8 66 477-549 5-72 (94)
189 KOG1369 Hexokinase [Carbohydra 24.1 4.7E+02 0.01 28.7 9.4 26 155-180 84-109 (474)
190 PRK14878 UGMP family protein; 24.1 1.1E+02 0.0024 31.7 4.7 45 268-312 39-83 (323)
191 KOG3133 40 kDa farnesylated pr 23.8 3.5E+02 0.0077 26.9 7.6 38 504-549 142-179 (267)
192 PRK05443 polyphosphate kinase; 23.5 9E+02 0.02 28.0 12.1 48 86-136 380-427 (691)
193 cd06572 Histidinol_dh Histidin 23.4 1.7E+02 0.0038 31.1 5.9 72 104-175 123-213 (390)
194 PF01150 GDA1_CD39: GDA1/CD39 23.2 91 0.002 33.7 4.0 94 81-175 62-182 (434)
195 PRK10972 Z-ring-associated pro 23.2 4.8E+02 0.01 22.4 8.7 48 527-574 47-96 (109)
196 TIGR03722 arch_KAE1 universal 23.2 1.3E+02 0.0028 31.1 5.1 43 269-311 41-83 (322)
197 PRK15080 ethanolamine utilizat 23.1 2.4E+02 0.0052 28.2 6.8 46 155-200 22-67 (267)
198 COG0533 QRI7 Metal-dependent p 22.7 1.9E+02 0.004 30.1 5.9 47 267-313 44-90 (342)
199 TIGR00329 gcp_kae1 metallohydr 22.3 1.3E+02 0.0029 30.7 4.9 48 267-314 42-89 (305)
200 PF14085 DUF4265: Domain of un 22.2 3.5E+02 0.0076 23.3 6.8 70 57-132 45-114 (117)
201 PLN02939 transferase, transfer 22.1 5.1E+02 0.011 31.1 9.9 74 474-547 237-310 (977)
202 COG1940 NagC Transcriptional r 21.9 3E+02 0.0064 28.0 7.4 51 156-206 5-55 (314)
203 PTZ00340 O-sialoglycoprotein e 21.7 1.6E+02 0.0034 30.9 5.2 47 268-314 44-90 (345)
204 PRK00865 glutamate racemase; P 21.6 2E+02 0.0042 28.8 5.8 44 293-340 176-219 (261)
205 PF07865 DUF1652: Protein of u 21.6 3.1E+02 0.0067 21.4 5.5 49 438-487 15-65 (69)
206 PLN02914 hexokinase 21.2 2.7E+02 0.0059 30.7 7.1 24 155-178 93-116 (490)
207 PLN02192 3-ketoacyl-CoA syntha 21.0 2.6E+02 0.0056 31.0 6.9 54 266-319 169-223 (511)
208 PF03630 Fumble: Fumble ; Int 20.9 2.3E+02 0.005 29.6 6.3 49 293-341 286-340 (341)
209 TIGR00114 lumazine-synth 6,7-d 20.8 1E+02 0.0022 27.7 3.1 61 272-342 13-73 (138)
210 PF11458 Mistic: Membrane-inte 20.8 71 0.0015 25.0 1.8 20 527-546 3-22 (84)
211 PF02075 RuvC: Crossover junct 20.6 5.8E+02 0.013 23.0 8.2 30 159-188 1-30 (149)
212 PRK07515 3-oxoacyl-(acyl carri 20.4 1.1E+02 0.0023 32.4 3.8 38 270-307 266-303 (372)
213 PF11593 Med3: Mediator comple 20.2 1.4E+02 0.003 31.2 4.2 40 538-578 9-48 (379)
214 PF12126 DUF3583: Protein of u 20.1 9.2E+02 0.02 24.5 11.5 52 498-549 72-123 (324)
215 TIGR00016 ackA acetate kinase. 20.1 2.6E+02 0.0055 30.0 6.4 26 294-319 327-353 (404)
216 cd02198 YjgH_like YjgH belongs 20.1 2.2E+02 0.0047 24.1 5.0 49 271-319 32-82 (111)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-126 Score=934.06 Aligned_cols=583 Identities=74% Similarity=1.109 Sum_probs=566.8
Q ss_pred ccccCceEEecCCCcccccc---------------cchhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEEeCCcee
Q 007552 13 FFKCLFICVDFSPLKKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETK 77 (599)
Q Consensus 13 ~~r~~p~~v~~~~~~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~~~g~~~ 77 (599)
=-|-||++|+|+++.|+.|. ..||||||+|+|+.+|++++.|||++|+.+|+|+++|....|+.+
T Consensus 66 GNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K 145 (663)
T KOG0100|consen 66 GNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETK 145 (663)
T ss_pred CCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCccc
Confidence 34899999999999999874 689999999999999999999999999999999999998558899
Q ss_pred EechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCcc
Q 007552 78 VFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEK 157 (599)
Q Consensus 78 ~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~ 157 (599)
.|+||++++|+|.++++.|+.|+|.+++++|+||||||++.||+++++|..+|||+++++|+||+|||++|++++....+
T Consensus 146 ~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEk 225 (663)
T KOG0100|consen 146 VFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEK 225 (663)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Q 007552 158 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRA 237 (599)
Q Consensus 158 ~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 237 (599)
++||||+||||||+|++.+.+++|+|+++.||.++||++||+++++|+...++++++.|++.+.+++.+|+++||+||+.
T Consensus 226 nilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRa 305 (663)
T KOG0100|consen 226 NILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRA 305 (663)
T ss_pred eEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhH
Q 007552 238 LSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY 317 (599)
Q Consensus 238 Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~ 317 (599)
||.+.++.+.|+++++|.|++-++||+.||++..+++.....+++++|+++++.+.+|+.|+||||++|||.||+.|+++
T Consensus 306 LSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~f 385 (663)
T KOG0100|consen 306 LSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDF 385 (663)
T ss_pred hccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcceeeeeeccC
Q 007552 318 FDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQD 397 (599)
Q Consensus 318 f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~~~~~~~~d 397 (599)
|+|++.++.+||++|||+|||.+|..+|+. ....++++.|++|+++||++.+|.|..+||||+.||++++..|++..|
T Consensus 386 F~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~D 463 (663)
T KOG0100|consen 386 FNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQD 463 (663)
T ss_pred hCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeeccc
Confidence 999999999999999999999999999998 558899999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEecCCCCCCHH
Q 007552 398 QQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQE 477 (599)
Q Consensus 398 ~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~ 477 (599)
+|+++.|++|+|++....+|+.||+|.|.|+||+|+|.|+|+|+|.+|.||+|+|++.++.+|++.+++|+++.++|++|
T Consensus 464 nQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~E 543 (663)
T KOG0100|consen 464 NQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPE 543 (663)
T ss_pred CCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 007552 478 EIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDY 557 (599)
Q Consensus 478 ~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~~t~~~~ 557 (599)
+|++|++++++|.+.|+..+++.++||+||+|.|.+++.+.+.+++...+++++++.+..+++++.+||++|.+++.++|
T Consensus 544 dIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~ 623 (663)
T KOG0100|consen 544 DIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEF 623 (663)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 007552 558 EEKLKEVEAVCNPIITAVYQRSGGAPGAGTESSDDDDSHDEL 599 (599)
Q Consensus 558 ~~kl~~L~~~~~~i~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 599 (599)
.++..+|..+++||..++++.+||+|+.. ++.|++.||||
T Consensus 624 ~ek~kele~vv~PiisklY~~ag~~~~~~--~~ed~~e~del 663 (663)
T KOG0100|consen 624 KEKKKELEAVVQPIISKLYGGAGGAPEPA--GEEDTDEKDEL 663 (663)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCC--CCccchhhccC
Confidence 99999999999999999999777766544 56677788886
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=9e-98 Score=834.91 Aligned_cols=569 Identities=63% Similarity=0.995 Sum_probs=535.0
Q ss_pred hhcccccCceEEecCCCcccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEeC
Q 007552 10 NASFFKCLFICVDFSPLKKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRD 73 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~~ 73 (599)
|..=.|.||++|+|.+..+..|. .+|||||++|+|+.++...+.|||.++. .+|.+.+.+.+ +
T Consensus 31 n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~ 109 (653)
T PTZ00009 31 NDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTY-Q 109 (653)
T ss_pred CCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEe-C
Confidence 44457999999999888777663 7899999999999999999999999985 77888899988 8
Q ss_pred CceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccC
Q 007552 74 GETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK 153 (599)
Q Consensus 74 g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~ 153 (599)
|+.+.|+|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||++||+++++|++||+|||++|+....
T Consensus 110 ~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~ 189 (653)
T PTZ00009 110 GEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK 189 (653)
T ss_pred CceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhcc
Confidence 87889999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C-CccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhc-CCCCccCHHHHHHHHHHH
Q 007552 154 G-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH-GKDISKDKRAIGKLRREA 231 (599)
Q Consensus 154 ~-~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~ 231 (599)
. .+.++|||||||||||+|++++.++.++++++.|+..+||++||..|++|+.++|++++ +.++..+++++.+|+.+|
T Consensus 190 ~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~a 269 (653)
T PTZ00009 190 GDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQC 269 (653)
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHH
Confidence 3 46789999999999999999999999999999999999999999999999999998887 467778899999999999
Q ss_pred HHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHH
Q 007552 232 ERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ 311 (599)
Q Consensus 232 e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~ 311 (599)
|++|+.||.+..+.+.+++++++.++.++|||++|+++|+|+++++..+|+++|+.+++++.+|+.|+||||+||+|+|+
T Consensus 270 EkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~ 349 (653)
T PTZ00009 270 ERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQ 349 (653)
T ss_pred HHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcceee
Q 007552 312 QLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQV 391 (599)
Q Consensus 312 ~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~~~ 391 (599)
++|++.|++.++..++||++|||+|||++|+++++...++++++.+.|++|++||++..++.+.++||+|+++|++++++
T Consensus 350 ~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~ 429 (653)
T PTZ00009 350 SLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQI 429 (653)
T ss_pred HHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeE
Confidence 99999997778889999999999999999999998654567889999999999999999999999999999999999999
Q ss_pred eeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEecCC
Q 007552 392 FTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDK 471 (599)
Q Consensus 392 ~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~~~ 471 (599)
|++..++|+.+.|.||+|++....+|..||+|.|.++++.+.|.+.|+++|++|.+|+|+|++.+..+++...+++....
T Consensus 430 f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~ 509 (653)
T PTZ00009 430 FTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDK 509 (653)
T ss_pred eEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeecc
Confidence 99999999999999999999888899999999999999999998899999999999999999999999999999888766
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCC
Q 007552 472 GRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQS 551 (599)
Q Consensus 472 ~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~ 551 (599)
.+|+.++++++++++.++..+|+..+++.+++|+||+|||++|++|++.+ +.+++++++++++.+.++++++|||++.+
T Consensus 510 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~-~~~~~t~ee~~~l~~~l~~~~~wL~~~~~ 588 (653)
T PTZ00009 510 GRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEK-VKGKLSDSDKATIEKAIDEALEWLEKNQL 588 (653)
T ss_pred ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhh-hhccCCHHHHHHHHHHHHHHHHHHhcCCc
Confidence 78999999999999999999999999999999999999999999998643 88999999999999999999999998888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007552 552 AEKEDYEEKLKEVEAVCNPIITAVYQRSG 580 (599)
Q Consensus 552 ~t~~~~~~kl~~L~~~~~~i~~r~~e~~~ 580 (599)
++.++|++++++|+++++||..|++.++|
T Consensus 589 ~~~~~~~~kl~eL~~~~~pi~~r~~~~~~ 617 (653)
T PTZ00009 589 AEKEEFEHKQKEVESVCNPIMTKMYQAAG 617 (653)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999876633
No 3
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.3e-93 Score=800.46 Aligned_cols=556 Identities=49% Similarity=0.800 Sum_probs=514.7
Q ss_pred hhcccccCceEEecCCC-cccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEe
Q 007552 10 NASFFKCLFICVDFSPL-KKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIR 72 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~-~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~ 72 (599)
|..=.|.||++|+|.+. .+..|. .+|||||++++|+. ...+++||.++. .+|...+. +
T Consensus 29 n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~~~~~--i- 103 (653)
T PRK13411 29 NSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDTVNVQ--I- 103 (653)
T ss_pred CCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCceEEE--E-
Confidence 44456999999999754 555553 68999999999964 456899999986 55555444 4
Q ss_pred CCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc
Q 007552 73 DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 73 ~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
+| +.|+|++|++++|++|++.|+.++|.++.++|||||++|++.||+++++||++||++++++++||+|||++|+...
T Consensus 104 ~~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~ 181 (653)
T PRK13411 104 RG--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDK 181 (653)
T ss_pred CC--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhcccc
Confidence 56 6899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Q 007552 153 KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 232 (599)
Q Consensus 153 ~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 232 (599)
...+.++|||||||||||+|++++.++.++++++.|+..+||++||..|++|+.++|+.+++.++..+++++.+|+.+||
T Consensus 182 ~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE 261 (653)
T PRK13411 182 QDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAE 261 (653)
T ss_pred cCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHH
Confidence 65678899999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHccCCcceEEEEecccC----CccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcH
Q 007552 233 RAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIP 308 (599)
Q Consensus 233 ~~K~~Ls~~~~~~i~i~~l~~----~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip 308 (599)
++|+.||.+..+.+.++.+.. +.++.+.|||++|+++|.|+++++..+|+++|+++++.+.+|+.|+||||+||+|
T Consensus 262 ~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP 341 (653)
T PRK13411 262 KAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIP 341 (653)
T ss_pred HHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcc
Confidence 999999999999998887643 2568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcc
Q 007552 309 KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKK 388 (599)
Q Consensus 309 ~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~ 388 (599)
+|++.|++.|++..+..++||++|||+|||++|+++++. .+++.+.|++|++||+++.++.|.++||+|+++|+++
T Consensus 342 ~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~ 417 (653)
T PRK13411 342 AVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSK 417 (653)
T ss_pred hHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecccceeeEEecCCceEEEEECCCccccee
Confidence 999999999977788899999999999999999999875 6789999999999999999999999999999999999
Q ss_pred eeeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEe
Q 007552 389 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITIT 468 (599)
Q Consensus 389 ~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~ 468 (599)
+++|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.+.|.++|+|+|.+|.||+|+|++.+..+|+...+.++
T Consensus 418 ~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~ 497 (653)
T PRK13411 418 SQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRIT 497 (653)
T ss_pred eEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhc
Q 007552 469 NDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDD 548 (599)
Q Consensus 469 ~~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~ 548 (599)
+. .+|++++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|++ +..++++++++++...+++.++||++
T Consensus 498 ~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~---~~~~~~~~er~~i~~~l~~~~~wL~~ 573 (653)
T PRK13411 498 NT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE---NGELISEELKQRAEQKVEQLEAALTD 573 (653)
T ss_pred cc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhc
Confidence 65 679999999999999999999999999999999999999999999975 57899999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 007552 549 NQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 581 (599)
Q Consensus 549 ~~~~t~~~~~~kl~~L~~~~~~i~~r~~e~~~~ 581 (599)
+ +++.++|++++++|++.+.++..++++++||
T Consensus 574 ~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 574 P-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4 5689999999999999999999999875544
No 4
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-95 Score=774.33 Aligned_cols=565 Identities=62% Similarity=0.977 Sum_probs=544.8
Q ss_pred hhcccccCceEEecCCCccccc---------------ccchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEeC
Q 007552 10 NASFFKCLFICVDFSPLKKKGG---------------WRLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRD 73 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~~~~~~---------------~~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~~ 73 (599)
|..-.|.||++|+|++..+..| +..|||||+.|+|+.++.++++|||.+.. .++.+.+.+.+ +
T Consensus 34 n~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~-~ 112 (620)
T KOG0101|consen 34 NDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTY-K 112 (620)
T ss_pred ccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecc-c
Confidence 5667899999999999888777 37899999999999999999999999995 66789999999 8
Q ss_pred CceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccC
Q 007552 74 GETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK 153 (599)
Q Consensus 74 g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~ 153 (599)
|+.+.|+|+++.+++|.+++..|+.++|.++.++|+|||+||++.||+++.+|+.+||++++++|+||+|||++|++.+.
T Consensus 113 ~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~ 192 (620)
T KOG0101|consen 113 GETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKK 192 (620)
T ss_pred ccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999997766
Q ss_pred C-CccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Q 007552 154 G-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 232 (599)
Q Consensus 154 ~-~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 232 (599)
. ...+|+|+|+||||||++++.+.++.+.+.++.++.++||++||+.|++|+..+|+++++.++..+++++.+|+.+||
T Consensus 193 ~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E 272 (620)
T KOG0101|consen 193 VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACE 272 (620)
T ss_pred ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH
Confidence 4 567899999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHH
Q 007552 233 RAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQ 312 (599)
Q Consensus 233 ~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~ 312 (599)
.+|+.||....+++.+++|++|.++...+||.+|+.++.+++..+..++..+|+++++.+.+|+.|+||||++|+|.+|.
T Consensus 273 ~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ 352 (620)
T KOG0101|consen 273 RAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQK 352 (620)
T ss_pred HHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcceeee
Q 007552 313 LLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVF 392 (599)
Q Consensus 313 ~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~~~~ 392 (599)
.++++|+++++..++|||++||+|||++|+.+++.......++.+.|+.|.++|+++.++.|.++|++|+.+|++++.+|
T Consensus 353 ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~f 432 (620)
T KOG0101|consen 353 LLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTF 432 (620)
T ss_pred HHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccccccccCCcceeeeecccccceeeeeee
Confidence 99999988999999999999999999999999998766678999999999999999999999999999999999999999
Q ss_pred eeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEecCCC
Q 007552 393 TTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKG 472 (599)
Q Consensus 393 ~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~ 472 (599)
+++.|||+.+.|.||+|++...++|..+|.|.|.|+||.|.|++.|+++|.+|.+|+|.|++.+..+|+...++|+++.+
T Consensus 433 tt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~g 512 (620)
T KOG0101|consen 433 TTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKG 512 (620)
T ss_pred eeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 007552 473 RLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSA 552 (599)
Q Consensus 473 ~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~~ 552 (599)
+|+.++|++|....+.+..+|...+.+.+++|.||+|+|.++..+++.. +.++++++.++...+++...||+.+..+
T Consensus 513 rls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~---~~i~~~~~~~~~~~~~~~i~wl~~~~~~ 589 (620)
T KOG0101|consen 513 RLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK---GKINEEDKQKILDKCNEVINWLDKNQLA 589 (620)
T ss_pred eeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc---cccChhhhhhHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999998742 7899999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007552 553 EKEDYEEKLKEVEAVCNPIITAVYQR 578 (599)
Q Consensus 553 t~~~~~~kl~~L~~~~~~i~~r~~e~ 578 (599)
.+++|++|..+|+..++||+.++++.
T Consensus 590 ~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 590 EKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred cccHHHHHHHHHHhhccHHHHhhhcc
Confidence 89999999999999999999999885
No 5
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.5e-93 Score=798.36 Aligned_cols=551 Identities=52% Similarity=0.856 Sum_probs=513.5
Q ss_pred hhcccccCceEEecCCC-ccccc---------------ccchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEe
Q 007552 10 NASFFKCLFICVDFSPL-KKKGG---------------WRLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIR 72 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~-~~~~~---------------~~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~ 72 (599)
|..=.|.||++|+|.++ .+..| +.+|||||++|+|+.++...+.|||+++. .+|...+.+
T Consensus 68 n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~--- 144 (663)
T PTZ00400 68 NSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEA--- 144 (663)
T ss_pred CCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEE---
Confidence 44446999999999754 55555 37899999999999999999999999985 666665553
Q ss_pred CCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc
Q 007552 73 DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 73 ~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
+| +.|+|++|++++|++|++.|+.++|.++.++|||||++|++.||+++++||++||++++++|+||+|||++|+...
T Consensus 145 ~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~ 222 (663)
T PTZ00400 145 QG--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK 222 (663)
T ss_pred CC--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhcccc
Confidence 55 7899999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Q 007552 153 KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 232 (599)
Q Consensus 153 ~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 232 (599)
. .+.++|||||||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+++++.++..+++++.+|+.+||
T Consensus 223 ~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE 301 (663)
T PTZ00400 223 N-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAE 301 (663)
T ss_pred C-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHH
Confidence 4 478999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHccCCcceEEEEecccCC----ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcH
Q 007552 233 RAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIP 308 (599)
Q Consensus 233 ~~K~~Ls~~~~~~i~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip 308 (599)
++|+.||.+.++.+.++.+..+ .++.++|||++|+++|+|+++++..+|+++|+++++.+.+|+.|+||||+||+|
T Consensus 302 ~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP 381 (663)
T PTZ00400 302 TAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMP 381 (663)
T ss_pred HHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCCh
Confidence 9999999999998888876543 478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcc
Q 007552 309 KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKK 388 (599)
Q Consensus 309 ~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~ 388 (599)
+|++.|++.| +.++...+||++|||+|||++|+++++. .+++.+.|++|++||+++.+|.|.++||+|+++|+++
T Consensus 382 ~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~ 456 (663)
T PTZ00400 382 KVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKK 456 (663)
T ss_pred HHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEEeccccceEEEecCCeeEEEEecCccCCccc
Confidence 9999999999 5678889999999999999999999875 5789999999999999999999999999999999999
Q ss_pred eeeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEe
Q 007552 389 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITIT 468 (599)
Q Consensus 389 ~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~ 468 (599)
+++|++..|+|+.+.|.||+|++..+.+|..||+|.|.++|+.+.|.++|+|+|.+|.||+|+|++.+..+|+...++++
T Consensus 457 ~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~ 536 (663)
T PTZ00400 457 SQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQ 536 (663)
T ss_pred eeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhc
Q 007552 469 NDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDD 548 (599)
Q Consensus 469 ~~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~ 548 (599)
.. .+|++++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|++ +..++++++++++.+.+++.++||++
T Consensus 537 ~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e---~~~~~s~~ere~i~~~l~~~~~WL~~ 612 (663)
T PTZ00400 537 SS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD---LKDKISDADKDELKQKITKLRSTLSS 612 (663)
T ss_pred cc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhc
Confidence 65 679999999999999999999999999999999999999999999974 88899999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007552 549 NQSAEKEDYEEKLKEVEAVCNPIITAVYQR 578 (599)
Q Consensus 549 ~~~~t~~~~~~kl~~L~~~~~~i~~r~~e~ 578 (599)
+ +.++|++++++|+++++++..+++++
T Consensus 613 ~---d~~~i~~k~~eL~~~l~~l~~k~y~~ 639 (663)
T PTZ00400 613 E---DVDSIKDKTKQLQEASWKISQQAYKQ 639 (663)
T ss_pred C---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 68999999999999999999988763
No 6
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=4.1e-93 Score=790.51 Aligned_cols=557 Identities=48% Similarity=0.795 Sum_probs=514.9
Q ss_pred hhcccccCceEEecCCCcccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEeC
Q 007552 10 NASFFKCLFICVDFSPLKKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRD 73 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~~ 73 (599)
|..=.|.||++|+|.+..+..|. .+||+||++|+|+.++...+.|||+++. .+|...+.. . +
T Consensus 54 n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~~-~-~ 131 (657)
T PTZ00186 54 NSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQD-G-N 131 (657)
T ss_pred cCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEEe-C-C
Confidence 55567999999999888777663 7999999999999999999999999985 566655442 1 3
Q ss_pred CceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccC
Q 007552 74 GETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK 153 (599)
Q Consensus 74 g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~ 153 (599)
| +.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||++|||+++++|+||+|||++|+....
T Consensus 132 ~--~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~ 209 (657)
T PTZ00186 132 G--KQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT 209 (657)
T ss_pred C--eEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC
Confidence 4 78999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Q 007552 154 GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAER 233 (599)
Q Consensus 154 ~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 233 (599)
.+.+++|||+||||||+|++++.++.++++++.|+.++||++||..|++|+.++|+++++.++..+++.+.+|+.+||+
T Consensus 210 -~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEk 288 (657)
T PTZ00186 210 -KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEK 288 (657)
T ss_pred -CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999998988899999999999999
Q ss_pred HHHHccCCcceEEEEecccCC----ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHH
Q 007552 234 AKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK 309 (599)
Q Consensus 234 ~K~~Ls~~~~~~i~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~ 309 (599)
+|+.||....+.+.++.+..+ .++.+.|||++|+++|+|+++++..+++++|+++++++.+|+.|+||||+||||.
T Consensus 289 aK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~ 368 (657)
T PTZ00186 289 AKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPK 368 (657)
T ss_pred HHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChH
Confidence 999999999999988866432 3578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcce
Q 007552 310 VQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKS 389 (599)
Q Consensus 310 v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~ 389 (599)
|++.|+++| +.++...+||++|||+|||++|+++++. .+++.+.|++|++||+++.+|.+.+|||||++||++++
T Consensus 369 V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~ 443 (657)
T PTZ00186 369 VVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKS 443 (657)
T ss_pred HHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEe
Confidence 999999999 5667788999999999999999999875 56889999999999999999999999999999999999
Q ss_pred eeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEec
Q 007552 390 QVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITN 469 (599)
Q Consensus 390 ~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~ 469 (599)
.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++||.|.|.++|+|+|++|.||+|+|++.+..||+..+++|+.
T Consensus 444 ~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~ 523 (657)
T PTZ00186 444 QTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITA 523 (657)
T ss_pred eccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC
Q 007552 470 DKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN 549 (599)
Q Consensus 470 ~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~ 549 (599)
. ..|++++++++.++.+++...|+..+++.+++|++|.+++.++..+++ . ..++++++..+...++..++||..+
T Consensus 524 ~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~l~~~ 598 (657)
T PTZ00186 524 N-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE---W-KYVSDAEKENVKTLVAELRKAMENP 598 (657)
T ss_pred C-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh---h-ccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 5 679999999999999999999999999999999999999999999965 2 3578999999999999999999853
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 007552 550 QSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA 582 (599)
Q Consensus 550 ~~~t~~~~~~kl~~L~~~~~~i~~r~~e~~~~~ 582 (599)
+.+.+.|++++++|++.+.++..+++..++|+
T Consensus 599 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 630 (657)
T PTZ00186 599 -NVAKDDLAAATDKLQKAVMECGRTEYQQAAAA 630 (657)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 44679999999999999999999877644443
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=9.8e-93 Score=793.78 Aligned_cols=559 Identities=48% Similarity=0.782 Sum_probs=516.9
Q ss_pred hhcccccCceEEecCCC-cccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEe
Q 007552 10 NASFFKCLFICVDFSPL-KKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIR 72 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~-~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~ 72 (599)
|..=.|.||++|+|.++ .+..|. .+|||||++++| ++...+.|||+++. .+|...+.+..
T Consensus 66 n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~~v~~~~~~- 142 (673)
T PLN03184 66 NAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPA- 142 (673)
T ss_pred CCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCCcEEEEEec-
Confidence 55567999999999754 455552 789999999987 55677889999985 66777777655
Q ss_pred CCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc
Q 007552 73 DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 73 ~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
.| +.|+|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||++||++++++|+||+|||++|+...
T Consensus 143 ~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~ 220 (673)
T PLN03184 143 IG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEK 220 (673)
T ss_pred CC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhccc
Confidence 55 6899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Q 007552 153 KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 232 (599)
Q Consensus 153 ~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 232 (599)
. .+.++||||+||||||+|++++.++.++++++.|+.++||++||..|++|+.++|+.+++.++..+++.+.+|+.+||
T Consensus 221 ~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aE 299 (673)
T PLN03184 221 K-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAE 299 (673)
T ss_pred C-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 5 467899999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHccCCcceEEEEecccC----CccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcH
Q 007552 233 RAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIP 308 (599)
Q Consensus 233 ~~K~~Ls~~~~~~i~i~~l~~----~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip 308 (599)
++|+.||.+.++.+.++.+.. +.++.+.|||++|+++|.++++++..+|+++|+++++.+.+|+.|+||||+||||
T Consensus 300 kaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP 379 (673)
T PLN03184 300 KAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIP 379 (673)
T ss_pred HHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccH
Confidence 999999999999998876542 2568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcc
Q 007552 309 KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKK 388 (599)
Q Consensus 309 ~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~ 388 (599)
+|++.|++.| +..+...+||++|||+|||++|+++++. .+++.+.|++|++||+++.++.+.++||+|+++|+++
T Consensus 380 ~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~ 454 (673)
T PLN03184 380 AVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSK 454 (673)
T ss_pred HHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecccccceEEecCCeeEEEEeCCCccceec
Confidence 9999999999 6778888999999999999999999875 5689999999999999999999999999999999999
Q ss_pred eeeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEe
Q 007552 389 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITIT 468 (599)
Q Consensus 389 ~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~ 468 (599)
+++|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.+.|.++|+|+|.+|.||+|+|++.+..+++...++++
T Consensus 455 ~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~ 534 (673)
T PLN03184 455 SEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITIT 534 (673)
T ss_pred ceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999887
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhc
Q 007552 469 NDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDD 548 (599)
Q Consensus 469 ~~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~ 548 (599)
.. .+|++++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|++ +.+++++++++++.+.|++.++||+.
T Consensus 535 ~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e---~~~~~~~eer~~l~~~l~~~e~wL~~ 610 (673)
T PLN03184 535 GA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE---LGDKVPADVKEKVEAKLKELKDAIAS 610 (673)
T ss_pred cc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhc
Confidence 64 679999999999999999999999999999999999999999999963 88899999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 007552 549 NQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 586 (599)
Q Consensus 549 ~~~~t~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~~~ 586 (599)
+ +.+.+++++++|.+.+.++..+++.++|++|+++
T Consensus 611 ~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 645 (673)
T PLN03184 611 G---STQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGP 645 (673)
T ss_pred C---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 6 6789999999999999999999988777765443
No 8
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.3e-93 Score=792.59 Aligned_cols=556 Identities=44% Similarity=0.749 Sum_probs=513.6
Q ss_pred hhcccccCceEEecCC-Cccccc---------------ccchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEe
Q 007552 10 NASFFKCLFICVDFSP-LKKKGG---------------WRLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIR 72 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~-~~~~~~---------------~~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~ 72 (599)
|..=.|.||++|+|.. ..+..| +.+|||||+++++ ++...+.+||.++. .+|...+.+..
T Consensus 29 n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g~~~i~~~~- 105 (668)
T PRK13410 29 NAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPR- 105 (668)
T ss_pred CCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCCcEEEEEec-
Confidence 5555799999999974 455554 3789999999977 55667899999985 66777776654
Q ss_pred CCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc
Q 007552 73 DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 73 ~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
.+ +.|+|++|++++|++|++.|+.++|.++.++|||||++|++.||+++++||++||++++++|+||+|||++|+...
T Consensus 106 ~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~ 183 (668)
T PRK13410 106 LE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDR 183 (668)
T ss_pred CC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhcccc
Confidence 34 7899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Q 007552 153 KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 232 (599)
Q Consensus 153 ~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 232 (599)
. .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|..+++.++..+++++.+|+.+||
T Consensus 184 ~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aE 262 (668)
T PRK13410 184 S-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAE 262 (668)
T ss_pred C-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHH
Confidence 5 467999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHccCCcceEEEEecccCC----ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcH
Q 007552 233 RAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIP 308 (599)
Q Consensus 233 ~~K~~Ls~~~~~~i~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip 308 (599)
++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|.++++++..+|+++|+++++.+.+|+.|+||||+||||
T Consensus 263 kaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP 342 (668)
T PRK13410 263 KAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMP 342 (668)
T ss_pred HHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccH
Confidence 9999999999999998876543 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcc
Q 007552 309 KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKK 388 (599)
Q Consensus 309 ~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~ 388 (599)
+|++.|++.| +.++...+||++|||+|||++|+++++. .+++.+.|++|+++|+++.+|.+.++||+|++||+++
T Consensus 343 ~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~ 417 (668)
T PRK13410 343 MVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRR 417 (668)
T ss_pred HHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeeccccccceecCCeeEEEEeCCCcccccc
Confidence 9999999999 6778889999999999999999999875 5789999999999999999999999999999999999
Q ss_pred eeeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEe
Q 007552 389 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITIT 468 (599)
Q Consensus 389 ~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~ 468 (599)
+.+|++..++|+.+.|.+|||++....+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..+|+...++|.
T Consensus 418 ~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~ 497 (668)
T PRK13410 418 SDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQ 497 (668)
T ss_pred cccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhch-hhhhhccCCHHHHHHHHHHHHHHHHHHh
Q 007552 469 NDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQIND-KDKLADKLESDEKDKIETAVKEALEWLD 547 (599)
Q Consensus 469 ~~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~-~~~~~~~~~~~e~~~i~~~l~e~~~WL~ 547 (599)
.. .+|+.++++++++++.++...|+..+++.+++|+||+|+|.+|++|.+ ...|..++++++++++...++++++||+
T Consensus 498 ~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~ 576 (668)
T PRK13410 498 GA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLE 576 (668)
T ss_pred cc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHh
Confidence 65 779999999999999999999999999999999999999999999975 2348899999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 007552 548 DN-QSAEKEDYEEKLKEVEAVCNPIITAVYQ 577 (599)
Q Consensus 548 ~~-~~~t~~~~~~kl~~L~~~~~~i~~r~~e 577 (599)
++ .....+.|.++++.|+.+..++..|+.|
T Consensus 577 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 577 QDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 87 3556777888888999999999999888
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.3e-91 Score=785.10 Aligned_cols=551 Identities=57% Similarity=0.904 Sum_probs=512.6
Q ss_pred hhcccccCceEEecC-CCcccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEe
Q 007552 10 NASFFKCLFICVDFS-PLKKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIR 72 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~-~~~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~ 72 (599)
|..-.|.||++|+|. +..+..|. .+|||||++ ++.++.+.+.|||+++. .+|...+. +
T Consensus 29 n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~~~--~- 103 (627)
T PRK00290 29 NAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVE--I- 103 (627)
T ss_pred CCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceEEE--E-
Confidence 444569999999996 44555553 789999999 66788888999999996 55655544 4
Q ss_pred CCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc
Q 007552 73 DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 73 ~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
+| +.|+|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||++||++++++|+||+|||++|+...
T Consensus 104 ~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~ 181 (627)
T PRK00290 104 DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181 (627)
T ss_pred CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhcc
Confidence 66 7899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Q 007552 153 KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 232 (599)
Q Consensus 153 ~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 232 (599)
. .+.++|||||||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+.+++.++..+++.+.+|+.+||
T Consensus 182 ~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae 260 (627)
T PRK00290 182 K-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAE 260 (627)
T ss_pred C-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHH
Confidence 4 468999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHccCCcceEEEEecccCC----ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcH
Q 007552 233 RAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIP 308 (599)
Q Consensus 233 ~~K~~Ls~~~~~~i~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip 308 (599)
++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+|+++++..+|+++|+.+++++.+|+.|+||||+||+|
T Consensus 261 ~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP 340 (627)
T PRK00290 261 KAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMP 340 (627)
T ss_pred HHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCCh
Confidence 9999999999999998876542 578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcc
Q 007552 309 KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKK 388 (599)
Q Consensus 309 ~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~ 388 (599)
+|++.|++.| +.++..++||++|||+|||++|+.+++. .+++.+.|++|++||+++.++.+.++||+|+++|+++
T Consensus 341 ~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~ 415 (627)
T PRK00290 341 AVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKK 415 (627)
T ss_pred HHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeeccceEEEEEecCCeEEEEecCCCcCCccc
Confidence 9999999999 6778899999999999999999999875 6789999999999999999999999999999999999
Q ss_pred eeeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEe
Q 007552 389 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITIT 468 (599)
Q Consensus 389 ~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~ 468 (599)
+++|++..|+|+.+.|.+|+|++....+|..||+|.|.++|+.+.|.++|+++|.+|.||+|+|++.+..+|+..++++.
T Consensus 416 ~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~ 495 (627)
T PRK00290 416 SQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITIT 495 (627)
T ss_pred eEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEec
Confidence 99999999999999999999999988999999999999999999998899999999999999999999999999999887
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhc
Q 007552 469 NDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDD 548 (599)
Q Consensus 469 ~~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~ 548 (599)
.. .+|+.++++++++++.++...|+..+++.+++|+||+|+|.+|+.|++ +..++++++++++.+.|++.++||++
T Consensus 496 ~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~---~~~~~~~~e~~~i~~~l~~~~~wL~~ 571 (627)
T PRK00290 496 AS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE---LGDKVPADEKEKIEAAIKELKEALKG 571 (627)
T ss_pred cc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhc
Confidence 65 679999999999999999999999999999999999999999999973 77899999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007552 549 NQSAEKEDYEEKLKEVEAVCNPIITAVYQRSG 580 (599)
Q Consensus 549 ~~~~t~~~~~~kl~~L~~~~~~i~~r~~e~~~ 580 (599)
+ +.++|++++++|+++++++..|+++..|
T Consensus 572 ~---~~~~i~~k~~~L~~~~~~~~~~~~~~~~ 600 (627)
T PRK00290 572 E---DKEAIKAKTEELTQASQKLGEAMYQQAQ 600 (627)
T ss_pred C---CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6 7899999999999999999999887544
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=5.4e-90 Score=769.72 Aligned_cols=548 Identities=57% Similarity=0.879 Sum_probs=508.7
Q ss_pred hhcccccCceEEecCCC-cccccc---------------cchhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEEeC
Q 007552 10 NASFFKCLFICVDFSPL-KKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRD 73 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~-~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~~~ 73 (599)
|..=.|.||++|+|.++ .+..|. .+|||||+++++ ++...+.|||.+...+|...+.+ +
T Consensus 27 n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~--~~~~~~~~~~~v~~~~~~~~~~v---~ 101 (595)
T TIGR02350 27 NAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDE--VTEEAKRVPYKVVGDGGDVRVKV---D 101 (595)
T ss_pred CCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchH--HHHHhhcCCeeEEcCCCceEEEE---C
Confidence 44456999999999866 556553 789999999954 67778999999666777666554 5
Q ss_pred CceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccC
Q 007552 74 GETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK 153 (599)
Q Consensus 74 g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~ 153 (599)
| +.|+|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+.||++++++++||+|||++|+....
T Consensus 102 ~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~ 179 (595)
T TIGR02350 102 G--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS 179 (595)
T ss_pred C--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc
Confidence 6 78999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Q 007552 154 GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAER 233 (599)
Q Consensus 154 ~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 233 (599)
..+.++|||||||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+++++.++..+++.+.+|+.+||+
T Consensus 180 ~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~ 259 (595)
T TIGR02350 180 KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEK 259 (595)
T ss_pred CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHccCCcceEEEEecccCC----ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHH
Q 007552 234 AKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK 309 (599)
Q Consensus 234 ~K~~Ls~~~~~~i~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~ 309 (599)
+|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+|+++++..+|+++|+++++++.+|+.|+||||+||+|+
T Consensus 260 aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~ 339 (595)
T TIGR02350 260 AKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPA 339 (595)
T ss_pred HHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChH
Confidence 999999999999988876542 5688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcce
Q 007552 310 VQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKS 389 (599)
Q Consensus 310 v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~ 389 (599)
|++.|++.| +.++..++||++|||+|||++|+.+++. .+++.+.|++|++||+++.++.+.++||+|+++|++++
T Consensus 340 v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~ 414 (595)
T TIGR02350 340 VQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKS 414 (595)
T ss_pred HHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccceeEEEecCCceEEEEeCCCcCCccce
Confidence 999999999 5778899999999999999999999876 57889999999999999999999999999999999999
Q ss_pred eeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEec
Q 007552 390 QVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITN 469 (599)
Q Consensus 390 ~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~ 469 (599)
++|++..|+|..+.|.+|+|++..+.+|..||+|.++++++.+.|.++|+++|.+|.||+|+|++.+..+|+...++++.
T Consensus 415 ~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~ 494 (595)
T TIGR02350 415 QVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITA 494 (595)
T ss_pred EeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEecc
Confidence 99999999999999999999999899999999999999999999988999999999999999999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC
Q 007552 470 DKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN 549 (599)
Q Consensus 470 ~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~ 549 (599)
. .+|++++++++++++.++...|+..+++.+++|+||+|||.+|+.|++ +.+++++++++++.+.+++.++||+++
T Consensus 495 ~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~---~~~~~~~~e~~~l~~~l~~~~~wL~~~ 570 (595)
T TIGR02350 495 S-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE---AGDKLPAEEKEKIEKAVAELKEALKGE 570 (595)
T ss_pred c-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 5 679999999999999999999999999999999999999999999974 578899999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007552 550 QSAEKEDYEEKLKEVEAVCNPIITAVY 576 (599)
Q Consensus 550 ~~~t~~~~~~kl~~L~~~~~~i~~r~~ 576 (599)
+..+|++++++|+++++++..+++
T Consensus 571 ---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 571 ---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999998754
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.1e-89 Score=767.27 Aligned_cols=550 Identities=53% Similarity=0.827 Sum_probs=509.9
Q ss_pred hhcccccCceEEecCCC-ccccc---------------ccchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEe
Q 007552 10 NASFFKCLFICVDFSPL-KKKGG---------------WRLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIR 72 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~-~~~~~---------------~~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~ 72 (599)
|..-.|.||++|+|.++ .+..| +.+||+||+++++ ++...+.|||.++. .+|.+.+.+..
T Consensus 29 n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~i~~~~~~- 105 (621)
T CHL00094 29 NAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPA- 105 (621)
T ss_pred CCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCCEEEEEec-
Confidence 55557999999999754 34444 3789999999976 55667889999985 66777777655
Q ss_pred CCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc
Q 007552 73 DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 73 ~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
.| ..|+|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||++||++++++|+||+|||++|+...
T Consensus 106 ~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~ 183 (621)
T CHL00094 106 LN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDK 183 (621)
T ss_pred CC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhcccc
Confidence 45 6899999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Q 007552 153 KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 232 (599)
Q Consensus 153 ~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 232 (599)
. .+.++||||+||||||+|++++.++.++++++.|+..+||++||..|++|+.++|+++++.++..+++.+.+|+.+||
T Consensus 184 ~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE 262 (621)
T CHL00094 184 K-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAE 262 (621)
T ss_pred C-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 4 467899999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHccCCcceEEEEecccC----CccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcH
Q 007552 233 RAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIP 308 (599)
Q Consensus 233 ~~K~~Ls~~~~~~i~i~~l~~----~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip 308 (599)
++|+.||.+..+.+.++.+.. +.++...|||++|+++|.++++++..+|+++|+++++.+.+|+.|+||||+||+|
T Consensus 263 ~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP 342 (621)
T CHL00094 263 KAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIP 342 (621)
T ss_pred HHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCCh
Confidence 999999999999998887643 2467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcc
Q 007552 309 KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKK 388 (599)
Q Consensus 309 ~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~ 388 (599)
.|++.|++.| +.++...+||++|||+|||++|+.+++. .+++.+.|++|++||++..++.+.++||+|+++|+++
T Consensus 343 ~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~ 417 (621)
T CHL00094 343 AIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKK 417 (621)
T ss_pred HHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeeeceeeeeeccCCEEEEEEeCCCccceee
Confidence 9999999999 5778889999999999999999999875 5688999999999999999999999999999999999
Q ss_pred eeeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEe
Q 007552 389 SQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITIT 468 (599)
Q Consensus 389 ~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~ 468 (599)
+.+|++..++|..+.+.+|||++..+.+|..||+|.|.++|+.+.|.++|+++|++|.+|+|+|++.+..+|+...+++.
T Consensus 418 ~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~ 497 (621)
T CHL00094 418 SEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQ 497 (621)
T ss_pred eEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeec
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999888887
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhc
Q 007552 469 NDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDD 548 (599)
Q Consensus 469 ~~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~ 548 (599)
+. .+|++++++++++++.++...|+..+++.+++|+||+|+|.+|+.|+. +..++++++++++...++++++|||+
T Consensus 498 ~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~wl~~ 573 (621)
T CHL00094 498 GA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE---LKDKISEEKKEKIENLIKKLRQALQN 573 (621)
T ss_pred cc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhc
Confidence 54 679999999999999999999999999999999999999999999974 88899999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 007552 549 NQSAEKEDYEEKLKEVEAVCNPIITAVYQ 577 (599)
Q Consensus 549 ~~~~t~~~~~~kl~~L~~~~~~i~~r~~e 577 (599)
+ ..++|++++++|+++++++..+++.
T Consensus 574 ~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 574 D---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred C---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 5689999999999999999999877
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.1e-87 Score=746.54 Aligned_cols=544 Identities=41% Similarity=0.658 Sum_probs=498.3
Q ss_pred hhcccccCceEEecCCC-cccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEe
Q 007552 10 NASFFKCLFICVDFSPL-KKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIR 72 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~-~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~ 72 (599)
|..-.|.||++|+|.++ .+..|. .+|||||++++|+. . .+.+||.+++ .+|.+.+.+.
T Consensus 26 n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~-- 100 (599)
T TIGR01991 26 DAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK--T-FSILPYRFVDGPGEMVRLRTV-- 100 (599)
T ss_pred CCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--h-cccCCEEEEEcCCCceEEEeC--
Confidence 44557899999999765 555554 67999999998853 3 6789999986 5666666653
Q ss_pred CCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc
Q 007552 73 DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 73 ~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
+| .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++||++++++++||+|||++|++..
T Consensus 101 ~~---~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~ 177 (599)
T TIGR01991 101 QG---TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177 (599)
T ss_pred CC---EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhcc
Confidence 33 799999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Q 007552 153 KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 232 (599)
Q Consensus 153 ~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e 232 (599)
. .+.++||||+||||||+|++++.++.++++++.|+..+||++||..|++++.++ ++.+...+++.+.+|+.+||
T Consensus 178 ~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~----~~~~~~~~~~~~~~L~~~ae 252 (599)
T TIGR01991 178 A-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ----LGISADLNPEDQRLLLQAAR 252 (599)
T ss_pred C-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh----hCCCCCCCHHHHHHHHHHHH
Confidence 5 477899999999999999999999999999999999999999999999998865 45555668889999999999
Q ss_pred HHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHH
Q 007552 233 RAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQ 312 (599)
Q Consensus 233 ~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~ 312 (599)
++|+.||.+..+.+.++. ++.++.++|||++|+++|+|+++++..+|+++|+++++.+.+|+.|+||||+||+|+|++
T Consensus 253 ~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~ 330 (599)
T TIGR01991 253 AAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRR 330 (599)
T ss_pred HHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHH
Confidence 999999999988888874 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcceeee
Q 007552 313 LLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVF 392 (599)
Q Consensus 313 ~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~~~~ 392 (599)
.|++.| +..+..++||++|||+|||++|+.+++. +..+++.+.|++|++||+++.+|.+.++||+|+++|++++..|
T Consensus 331 ~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~ 407 (599)
T TIGR01991 331 AVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEF 407 (599)
T ss_pred HHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEE
Confidence 999999 5667788999999999999999999876 3456899999999999999999999999999999999999999
Q ss_pred eeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEecCCC
Q 007552 393 TTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKG 472 (599)
Q Consensus 393 ~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~ 472 (599)
++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..+|+...+.+.+. .
T Consensus 408 ~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~ 486 (599)
T TIGR01991 408 TTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-Y 486 (599)
T ss_pred EEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888765 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 007552 473 RLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSA 552 (599)
Q Consensus 473 ~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~~ 552 (599)
.|++++++++.+++.++..+|+..++..+++|++|+|+|.+++.+.+ +...+++++++++...+++.++||+++
T Consensus 487 ~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~--- 560 (599)
T TIGR01991 487 GLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA---DGDLLSEDERAAIDAAMEALQKALQGD--- 560 (599)
T ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---
Confidence 69999999999999999999999999999999999999999999865 446789999999999999999999986
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007552 553 EKEDYEEKLKEVEAVCNPIITAVYQR 578 (599)
Q Consensus 553 t~~~~~~kl~~L~~~~~~i~~r~~e~ 578 (599)
+.++++++.++|++++.++..+.+.+
T Consensus 561 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 561 DADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999999866653
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5.5e-86 Score=734.36 Aligned_cols=540 Identities=40% Similarity=0.656 Sum_probs=493.6
Q ss_pred hhcccccCceEEecCCCcccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEeC
Q 007552 10 NASFFKCLFICVDFSPLKKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRD 73 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~~ 73 (599)
|..=.|.||++|+|.++.+..|+ .+|||||++++| ++...+.+||.++. .+|.+.+.+. +
T Consensus 46 n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~--~ 121 (616)
T PRK05183 46 DEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA--Q 121 (616)
T ss_pred cCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEec--C
Confidence 33447899999999888777774 689999999987 44556789999886 5777776653 3
Q ss_pred CceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccC
Q 007552 74 GETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK 153 (599)
Q Consensus 74 g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~ 153 (599)
| .++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||++||++++++|+||+|||++|++...
T Consensus 122 ~---~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~ 198 (616)
T PRK05183 122 G---LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG 198 (616)
T ss_pred C---eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC
Confidence 3 7899999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Q 007552 154 GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAER 233 (599)
Q Consensus 154 ~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 233 (599)
.+.++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++++ .+...+++.+.+|+.+||+
T Consensus 199 -~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~----~~~~~~~~~~~~L~~~ae~ 273 (616)
T PRK05183 199 -QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG----LSPRLDPEDQRLLLDAARA 273 (616)
T ss_pred -CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC----CCcCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999887654 4444678899999999999
Q ss_pred HHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHH
Q 007552 234 AKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQL 313 (599)
Q Consensus 234 ~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~ 313 (599)
+|+.||.+..+.+.+..+ ...|||++|+++|.|+++++..+++++|+++++.+.+|+.|+||||+||+|+|++.
T Consensus 274 aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~ 347 (616)
T PRK05183 274 AKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347 (616)
T ss_pred HHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHH
Confidence 999999999888888532 22499999999999999999999999999999999999999999999999999999
Q ss_pred HHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcceeeee
Q 007552 314 LKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFT 393 (599)
Q Consensus 314 l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~~~~~ 393 (599)
|+++| +..+..++||++|||+|||++|+.+++. ...+++.+.|++|++||+++.+|.+.++||+|+++|++++..|+
T Consensus 348 l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~ 424 (616)
T PRK05183 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFT 424 (616)
T ss_pred HHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEE
Confidence 99999 5666778999999999999999999876 33568999999999999999999999999999999999999999
Q ss_pred eccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEecCCCC
Q 007552 394 TYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGR 473 (599)
Q Consensus 394 ~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ 473 (599)
+..|+|+.+.+.+|||++..+.+|..||+|.|.++|+.|.|.++|+|+|++|.||+|+|++.+..+|+..++.+.+. ..
T Consensus 425 t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ 503 (616)
T PRK05183 425 TFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YG 503 (616)
T ss_pred eccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988765 56
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007552 474 LSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAE 553 (599)
Q Consensus 474 l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~~t 553 (599)
|++++++++.+++.++...|+..+++.+++|++|+|+|.+++.+.+ ....+++++++++...+++.++||..+ +
T Consensus 504 ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~~---d 577 (616)
T PRK05183 504 LTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA---DGDLLSAAERAAIDAAMAALREVAQGD---D 577 (616)
T ss_pred CCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---C
Confidence 9999999999999999999999999999999999999999999965 336789999999999999999999875 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 007552 554 KEDYEEKLKEVEAVCNPIITAVYQ 577 (599)
Q Consensus 554 ~~~~~~kl~~L~~~~~~i~~r~~e 577 (599)
.++|++++++|++++.++..+.++
T Consensus 578 ~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 578 ADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999987665
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-88 Score=687.33 Aligned_cols=561 Identities=52% Similarity=0.835 Sum_probs=526.8
Q ss_pred hhhcccccCceEEecCCC-cccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEE
Q 007552 9 SNASFFKCLFICVDFSPL-KKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQI 71 (599)
Q Consensus 9 ~~~~~~r~~p~~v~~~~~-~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~ 71 (599)
-|+-+-|.||++|+|.-+ .++.|. .-||||||+|+|+.+|.+++..||++|. .+|..+++.
T Consensus 53 enaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~-- 130 (640)
T KOG0102|consen 53 ENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA-- 130 (640)
T ss_pred ecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe--
Confidence 489999999999999544 444442 5699999999999999999999999997 788877765
Q ss_pred eCCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccc
Q 007552 72 RDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLD 151 (599)
Q Consensus 72 ~~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~ 151 (599)
.| +.|+|.++.+++|.+++++|+++++..+..+|+||||||++.||+++++|.++||++++++++||+|||++|+++
T Consensus 131 -~G--~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld 207 (640)
T KOG0102|consen 131 -RG--KQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLD 207 (640)
T ss_pred -CC--eEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhccc
Confidence 57 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHH
Q 007552 152 KKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREA 231 (599)
Q Consensus 152 ~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 231 (599)
... +..++|+|+||||||+++..+.++.+++.++.||.++||++||..+++++...|++..++++..+.+++.||+.++
T Consensus 208 ~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaa 286 (640)
T KOG0102|consen 208 KKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAA 286 (640)
T ss_pred ccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHH
Confidence 886 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCcceEEEEecccCC----ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCc
Q 007552 232 ERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI 307 (599)
Q Consensus 232 e~~K~~Ls~~~~~~i~i~~l~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri 307 (599)
|++|+.||...+..+.++.+..+ ..+++++||.+||+++.+++++.+++++++|++|++...+|+.|+||||.+|+
T Consensus 287 EkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrm 366 (640)
T KOG0102|consen 287 EKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRM 366 (640)
T ss_pred HhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhc
Confidence 99999999999999998877655 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCc
Q 007552 308 PKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTK 387 (599)
Q Consensus 308 p~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~ 387 (599)
|.+++.+++.| +.......||+++||.|||+++..+++. ++++.+.|++|+++|+++-+|.|..++|+++.||++
T Consensus 367 pkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdVtpLsLgietlggvft~Li~rnttIptk 441 (640)
T KOG0102|consen 367 PKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTK 441 (640)
T ss_pred HHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeecchHHHHHHhhhhhheecccCCcccCch
Confidence 99999999999 7888999999999999999999999988 889999999999999999999999999999999999
Q ss_pred ceeeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEE
Q 007552 388 KSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITI 467 (599)
Q Consensus 388 ~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i 467 (599)
++..|++..|+|+.+.|.++||++....+|+.+|+|.+.|+||.|+|.|+|+|+|.+|.||+++|++.++.+|+.+++++
T Consensus 442 ksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i 521 (640)
T KOG0102|consen 442 KSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITI 521 (640)
T ss_pred hhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHh
Q 007552 468 TNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLD 547 (599)
Q Consensus 468 ~~~~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~ 547 (599)
... +.||+.+++.+..+.+.+...|..++++.+..|..+++++.....+.. +.+..+.++..+|...+....+.+.
T Consensus 522 ~~s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~---~~~~~~~~~~~~i~~~i~~l~~~~~ 597 (640)
T KOG0102|consen 522 ASS-GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE---FEEKIPAEECEKLEEKISDLRELVA 597 (640)
T ss_pred eec-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh---hhhhCcHHHHHHHHHHHHHHHHHHh
Confidence 887 669999999999999999999999999999999999999999999876 7778888888899999999998886
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007552 548 DNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 584 (599)
Q Consensus 548 ~~~~~t~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~ 584 (599)
.-...+.+++..+...|++..-|+...++...|..+.
T Consensus 598 ~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~~~~ 634 (640)
T KOG0102|consen 598 NKDSGDMEEIKKAMSALQQASLKLFESAYKNMGAGGE 634 (640)
T ss_pred hhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcccCC
Confidence 5433455899999999999999999988876544433
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.3e-85 Score=740.41 Aligned_cols=557 Identities=48% Similarity=0.807 Sum_probs=510.7
Q ss_pred hhcccccCceEEecCCCcccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEeC
Q 007552 10 NASFFKCLFICVDFSPLKKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRD 73 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~~ 73 (599)
|..=-|.||++|+|++..+..|+ ++|||||+.++++.++.+.+.+||.++. .+|.+.+.+.+ .
T Consensus 26 ~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 104 (602)
T PF00012_consen 26 NEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDGKVYFEVDY-D 104 (602)
T ss_dssp -TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTTEEEEEEEE-T
T ss_pred cccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccchhhhcccccccccccccccccccc-c
Confidence 34445889999999988777664 7999999999999999999999999986 68999999998 8
Q ss_pred CceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccC
Q 007552 74 GETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK 153 (599)
Q Consensus 74 g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~ 153 (599)
|+.+.++|+++++++|++|++.|+.+++.++.++|||||++|+..||+++++||+.||++++++|+||+|||++|++.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~ 184 (602)
T PF00012_consen 105 GKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERS 184 (602)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSS
T ss_pred ccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccccccccceeeccccccccccccccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Q 007552 154 GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAER 233 (599)
Q Consensus 154 ~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 233 (599)
..+.++|||||||||+|+|++++.++.++++++.++..+||.+||..|++++.++|+.+++.++..+++.+.+|+.+||+
T Consensus 185 ~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~ 264 (602)
T PF00012_consen 185 DKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEK 264 (602)
T ss_dssp SSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHH
T ss_pred ccccceeccccccceEeeeehhcccccccccccccccccccceecceeeccccccccccccccccccccccccccccccc
Confidence 67889999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHccC--CcceEEEEecccC-CccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHH
Q 007552 234 AKRALSS--QHQVRVEIESLFD-GIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKV 310 (599)
Q Consensus 234 ~K~~Ls~--~~~~~i~i~~l~~-~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v 310 (599)
+|+.||. +....+.++.+.+ |.++.+.|||++|++++.|+++++..+|+++|++++++..+|+.|+||||+||+|+|
T Consensus 265 ~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v 344 (602)
T PF00012_consen 265 AKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYV 344 (602)
T ss_dssp HHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHH
T ss_pred cccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccceeEEecCcccchhh
Confidence 9999999 6677778888777 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCccee
Q 007552 311 QQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQ 390 (599)
Q Consensus 311 ~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~~ 390 (599)
++.|++.|+ ..+..++||++|||+|||++|+.+++. ++.+++.+.|++|++||++..++.+.+++++|+++|.+.+.
T Consensus 345 ~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~ 421 (602)
T PF00012_consen 345 QEALKELFG-KKISKSVNPDEAVARGAALYAAILSGS--FRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSK 421 (602)
T ss_dssp HHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS--CSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEE
T ss_pred hhhhhhccc-cccccccccccccccccccchhhhccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 999999995 778889999999999999999999886 45678899999999999999999999999999999999999
Q ss_pred eeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEecC
Q 007552 391 VFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITND 470 (599)
Q Consensus 391 ~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~~ 470 (599)
.|.+..++|+.+.+.+|+|+.....+|..||++.+.++++.+.|.++|+++|++|.+|+|+|++.+..++....+++...
T Consensus 422 ~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~ 501 (602)
T PF00012_consen 422 SFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKK 501 (602)
T ss_dssp EEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESS
T ss_pred ccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeeeeehhhhhcccccccccccccccc
Confidence 99999999999999999999988889999999999999999999999999999999999999999999988888888877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC-
Q 007552 471 KGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN- 549 (599)
Q Consensus 471 ~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~- 549 (599)
.. +++++++++.++++++...|+..+++.+++|+||+++|++|+.+++. .++++++++ .+.+++..+||++.
T Consensus 502 ~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~---~~~~~~~~~---~~~l~~~~~wl~~~~ 574 (602)
T PF00012_consen 502 ET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED---KDFVSEEEK---KKKLKETSDWLEDNG 574 (602)
T ss_dssp SS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---GGGSTHHHH---HHHHHHHHHHHHHHT
T ss_pred cc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh---hccCCHHHH---HHHHHHHHHHHHhhc
Confidence 44 99999999999999999999999999999999999999999999874 567777766 88999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 007552 550 QSAEKEDYEEKLKEVEAVCNPIITAVYQ 577 (599)
Q Consensus 550 ~~~t~~~~~~kl~~L~~~~~~i~~r~~e 577 (599)
.+++.++|++|+++|+++.+||..|+++
T Consensus 575 ~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 575 EDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778999999999999999999999874
No 16
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-85 Score=685.11 Aligned_cols=546 Identities=32% Similarity=0.549 Sum_probs=502.8
Q ss_pred cccCceEEecCCCcccccc---------------cchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEeCCcee
Q 007552 14 FKCLFICVDFSPLKKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETK 77 (599)
Q Consensus 14 ~r~~p~~v~~~~~~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~~g~~~ 77 (599)
-||||+||+|+++.|.+|. ++|||+||+|+||.+|.+.+.+||.++. .||.+.+.+.| -|+.+
T Consensus 32 nr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~y-lge~~ 110 (727)
T KOG0103|consen 32 NRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEY-LGEKH 110 (727)
T ss_pred cccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhhcccccchheeecCCCCcceeehc-ccCCC
Confidence 4999999999999999985 7999999999999999999999999996 89999999999 99999
Q ss_pred EechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCC---
Q 007552 78 VFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG--- 154 (599)
Q Consensus 78 ~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~--- 154 (599)
.|+|++|+||+|.+|+..|++.+..++.+|||+||+||++.||+++.+||++|||+++++++|.+|+|++||+.+.+
T Consensus 111 ~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~ 190 (727)
T KOG0103|consen 111 PFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLPE 190 (727)
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred ---CccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHH
Q 007552 155 ---GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREA 231 (599)
Q Consensus 155 ---~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 231 (599)
++.+|+++|+|++++.+|++.|..|.++++++.+|..+||++||..|.+|+..+|+.+|++++..++++..||+.+|
T Consensus 191 ~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~ 270 (727)
T KOG0103|consen 191 NEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAEC 270 (727)
T ss_pred cccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHH
Q 007552 232 ERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ 311 (599)
Q Consensus 232 e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~ 311 (599)
|+.|+.||++.....+|++++++.|.+..|+|++||++|.|+++++..++.++|+++++..++|+.|.+|||+||||.|+
T Consensus 271 EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaik 350 (727)
T KOG0103|consen 271 EKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIK 350 (727)
T ss_pred HHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEee----C-CeeEEEEeCCCCCCC
Q 007552 312 QLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETV----G-GVMTKLIPRNTVIPT 386 (599)
Q Consensus 312 ~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~----~-~~~~~ii~~g~~iP~ 386 (599)
+.|.++| ++++.+++|.++|||+|||+++|++|+. ++++.+.++|+.|+++.+.+. + +....+||+|.++|.
T Consensus 351 e~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~--frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~ 427 (727)
T KOG0103|consen 351 EMISDFF-GKELSRTLNQDEAVARGAALQCAILSPT--FRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPS 427 (727)
T ss_pred HHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCcc--ccceecceecccceeEEEEeccccccCCCceeeecCCCCCCC
Confidence 9999999 8999999999999999999999999998 679999999999999988754 2 555789999999999
Q ss_pred cceeeeeeccCCceeEEEEEEecC-CcccccCccceeEEecCCCCCCC-CCCeEEEEEEEcCCceEEEEEeec-------
Q 007552 387 KKSQVFTTYQDQQTTVSIQVFEGE-RSLTKDCRLLGKFDLSGIPPAPR-GTPQIEVTFEVDANGILNVKAEDK------- 457 (599)
Q Consensus 387 ~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~l~~~~~~~~-g~~~i~v~f~~d~~g~l~v~~~~~------- 457 (599)
++..+|.... .+.+.++++. ...+.....|++|.+.++.+... ...++++.+.++.+|++.+...-.
T Consensus 428 ~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~ve 503 (727)
T KOG0103|consen 428 VKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVE 503 (727)
T ss_pred ceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccccccceeEEEEEcCccceeeecceeecccchh
Confidence 9999987765 4778877765 45554567999999998887766 345799999999999999864210
Q ss_pred ---------------------CCCc----eeEEEEecC-CCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHH
Q 007552 458 ---------------------GTGK----SEKITITND-KGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVY 511 (599)
Q Consensus 458 ---------------------~~~~----~~~~~i~~~-~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~ 511 (599)
..++ ...+++... .+.|+..+++..+.++.+|..+|+...++..++|.||+|+|
T Consensus 504 ev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY 583 (727)
T KOG0103|consen 504 EVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVY 583 (727)
T ss_pred ccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHH
Confidence 0111 112333333 35799999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHH
Q 007552 512 NMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCN 569 (599)
Q Consensus 512 ~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~-~~~t~~~~~~kl~~L~~~~~ 569 (599)
++|++|++ .|.+++++.+++++...|+++++|||++ ++.++..|..|+.+|+.+.+
T Consensus 584 ~~R~kl~~--~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~ 640 (727)
T KOG0103|consen 584 DMRDKLSD--KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD 640 (727)
T ss_pred HHHHHhhh--hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh
Confidence 99999998 4999999999999999999999999998 78999999999999999985
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.3e-83 Score=707.07 Aligned_cols=518 Identities=33% Similarity=0.510 Sum_probs=457.3
Q ss_pred hhcccccCceEEecCCCccccc-----ccchhhccCCCCCh----HHHHhhccCCcEEEecCCceEEEEEEeCCceeEec
Q 007552 10 NASFFKCLFICVDFSPLKKKGG-----WRLIEFVFARFEDK----EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFS 80 (599)
Q Consensus 10 ~~~~~r~~p~~v~~~~~~~~~~-----~~~k~llG~~~~d~----~~~~~~~~~~~~~v~~~g~~~~~v~~~~g~~~~~s 80 (599)
|..=.|.||++|+|.+..+..| +++|||||++++|. .++...+. .+.. +...+.+.+ +| +.|+
T Consensus 46 n~~g~~~tPS~V~f~~~~~~vG~~Ati~~~KrliG~~~~~~~~~~~~~~~~k~----~~~~-~~~~~~~~~-~~--~~~s 117 (595)
T PRK01433 46 SIDDKELIPTTIDFTSNNFTIGNNKGLRSIKRLFGKTLKEILNTPALFSLVKD----YLDV-NSSELKLNF-AN--KQLR 117 (595)
T ss_pred CCCCCeecCeEEEEcCCCEEECchhhHHHHHHHhCCCchhhccchhhHhhhhh----eeec-CCCeeEEEE-CC--EEEc
Confidence 4445799999999988777777 46899999999873 22222221 1211 223345555 55 7899
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEE
Q 007552 81 PEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNIL 160 (599)
Q Consensus 81 ~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vl 160 (599)
|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++||++++++++||+|||++|+.... ...++|
T Consensus 118 peei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vl 196 (595)
T PRK01433 118 IPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYL 196 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 356899
Q ss_pred EEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccC
Q 007552 161 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 240 (599)
Q Consensus 161 VvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 240 (599)
|||+||||||+|++++.++.++++++.|+.++||++||.+|++|+..+|.. ..+.. .++.||++|+.||.
T Consensus 197 V~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~ 266 (595)
T PRK01433 197 VYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDL------PNSID----TLQLAKKAKETLTY 266 (595)
T ss_pred EEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999887632 12222 23469999999998
Q ss_pred CcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCC
Q 007552 241 QHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG 320 (599)
Q Consensus 241 ~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~ 320 (599)
+..... ..++|||++|+++|+|+++++..+++++|++++ ..+|+.|+||||+||+|+|++.|++.| +
T Consensus 267 ~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~ 333 (595)
T PRK01433 267 KDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-K 333 (595)
T ss_pred Cccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-C
Confidence 765321 168899999999999999999999999999998 578999999999999999999999999 6
Q ss_pred CCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcceeeeeeccCCce
Q 007552 321 KEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQT 400 (599)
Q Consensus 321 ~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~~~~~~~~d~q~ 400 (599)
.++..++||++|||+|||++|+.+++. ..++.+.|++|+++|+++.+|.+.++||||+++|+++++.|++..|+|+
T Consensus 334 ~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~ 409 (595)
T PRK01433 334 VDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQT 409 (595)
T ss_pred CCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCe
Confidence 778888999999999999999999865 4578899999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEecCCCCCCHHHHH
Q 007552 401 TVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEID 480 (599)
Q Consensus 401 ~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~i~ 480 (599)
.+.|.+|||++..+.+|..||+|.|.++|+.|.|.++|+|+|++|.||+|+|++.+..||+..++.|..+ ..|++++++
T Consensus 410 ~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~ 488 (595)
T PRK01433 410 GIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEID 488 (595)
T ss_pred EEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999765 569999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007552 481 RMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEK 560 (599)
Q Consensus 481 ~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~~t~~~~~~k 560 (599)
+++++++++...|...++..+++|++|++++.+++.+++ +...+++++++.+...+++.++||..+ +...+++.
T Consensus 489 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~ 562 (595)
T PRK01433 489 IMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE---LTTLLSESEISIINSLLDNIKEAVHAR---DIILINNS 562 (595)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 999999999999999999999999999999999999975 556689999999999999999999865 56677777
Q ss_pred HHHHHHHHHH
Q 007552 561 LKEVEAVCNP 570 (599)
Q Consensus 561 l~~L~~~~~~ 570 (599)
+++|++.+.+
T Consensus 563 ~~~~~~~~~~ 572 (595)
T PRK01433 563 IKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHH
Confidence 7777666666
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-79 Score=671.55 Aligned_cols=532 Identities=55% Similarity=0.838 Sum_probs=496.7
Q ss_pred hhhhcccccCceEEecCCCc-ccccccc---------------hhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEE
Q 007552 8 ESNASFFKCLFICVDFSPLK-KKGGWRL---------------IEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQI 71 (599)
Q Consensus 8 ~~~~~~~r~~p~~v~~~~~~-~~~~~~~---------------k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~ 71 (599)
..|+...|+||++|+|+... +..|+.. ||++|+. .....+.+.+
T Consensus 31 i~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~--------------------~~~~~~~~~~ 90 (579)
T COG0443 31 IENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEV 90 (579)
T ss_pred ecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCC--------------------CCCCcceeee
Confidence 35778889999999999775 7777643 4444443 1122244555
Q ss_pred eCCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccc
Q 007552 72 RDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLD 151 (599)
Q Consensus 72 ~~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~ 151 (599)
+| +.|+|+++++++|++|++.|+.+++..+.++|||||+||++.||+++++|+++||++++++++||+|||++|+.+
T Consensus 91 -~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~ 167 (579)
T COG0443 91 -DG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167 (579)
T ss_pred -CC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhc
Confidence 66 889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHH
Q 007552 152 KKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREA 231 (599)
Q Consensus 152 ~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 231 (599)
.. .+.+|+|||+||||||+|++++.++.++++++.|+.++||++||.+|.+++..+|+.+++.++..+++.+.+|+.+|
T Consensus 168 ~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~a 246 (579)
T COG0443 168 KG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAA 246 (579)
T ss_pred cC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHH
Confidence 87 58899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHH
Q 007552 232 ERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ 311 (599)
Q Consensus 232 e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~ 311 (599)
|++|+.||...++.+.++.+..+.++..+|||++||+++.+++.++..++.++|.+++++..+|+.|+||||++|||.|+
T Consensus 247 e~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~ 326 (579)
T COG0443 247 EKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQ 326 (579)
T ss_pred HHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHH
Confidence 99999999999999999887777778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCCeeEEEEeCCCCCCCcceee
Q 007552 312 QLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQV 391 (599)
Q Consensus 312 ~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~g~~iP~~~~~~ 391 (599)
+.+++.| +.++...+||+++||.|||++|..+++. ..++...|++|+++|+++.++.+..++++|+.+|.++...
T Consensus 327 ~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~ 401 (579)
T COG0443 327 ELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQE 401 (579)
T ss_pred HHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceE
Confidence 9999999 5889999999999999999999999987 3388999999999999999999999999999999999999
Q ss_pred eeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCCCCCeEEEEEEEcCCceEEEEEeecCCCceeEEEEecCC
Q 007552 392 FTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDK 471 (599)
Q Consensus 392 ~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~~~ 471 (599)
|++..|+|..+.+.+++|++....+|..+|.|.+.++||.|.|.+.|+++|.+|.||++.|++.+..+|+...++|....
T Consensus 402 f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~ 481 (579)
T COG0443 402 FSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASS 481 (579)
T ss_pred EEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCC
Q 007552 472 GRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQS 551 (599)
Q Consensus 472 ~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~~~ 551 (599)
+ |++++++.+...+..+.+.|...++..+.+|..+.+++.++..|.+. . .++++++.++...+.++++||+. .
T Consensus 482 ~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~-~- 554 (579)
T COG0443 482 G-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEI---V-KVSEEEKEKIEEAITDLEEALEG-E- 554 (579)
T ss_pred C-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhh---c-cCCHHHHHHHHHHHHHHHHHHhc-c-
Confidence 6 99999999999999999999999999999999999999999999873 3 89999999999999999999998 2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Q 007552 552 AEKEDYEEKLKEVEAVCNPIITAVYQ 577 (599)
Q Consensus 552 ~t~~~~~~kl~~L~~~~~~i~~r~~e 577 (599)
.+++..+.++|+....++..++++
T Consensus 555 --~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 555 --KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999988765
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-72 Score=589.48 Aligned_cols=557 Identities=30% Similarity=0.464 Sum_probs=481.5
Q ss_pred hhhcccccCceEEecCCCcccccc---------------cchhhccCCCCChHHHHhhccCCc-EEEecCCceEEEEEEe
Q 007552 9 SNASFFKCLFICVDFSPLKKKGGW---------------RLIEFVFARFEDKEVQRDMKLAPY-KIVNRDGKPYIQVQIR 72 (599)
Q Consensus 9 ~~~~~~r~~p~~v~~~~~~~~~~~---------------~~k~llG~~~~d~~~~~~~~~~~~-~~v~~~g~~~~~v~~~ 72 (599)
+|..==|-||++|+|.+..|..|. +++.|||+++.+|.++.+.+++|| .++....+..+.+.+
T Consensus 49 Ln~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i- 127 (902)
T KOG0104|consen 49 LNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKI- 127 (902)
T ss_pred echhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEe-
Confidence 355556999999999999999885 789999999999999988898885 556433455666665
Q ss_pred CCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc
Q 007552 73 DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 73 ~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
++ ...|++|+++||+|.+.+..|+.+...+|+++|||||.||++.||+++.+||++||++++.||++.+|||+.|++.+
T Consensus 128 ~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~r 206 (902)
T KOG0104|consen 128 SD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFR 206 (902)
T ss_pred CC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhc
Confidence 33 57899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC----CccEEEEEEcCCCEEEEEEEEEe----------CCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCC--C
Q 007552 153 KG----GEKNILVFDLGGGTFDVSILTID----------NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK--D 216 (599)
Q Consensus 153 ~~----~~~~vlVvD~Gggt~dvsv~~~~----------~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~--~ 216 (599)
.. .+++++|||||+|+|.++++.+. ...+++++++++..|||..|+..|.+|+.+.|.+.++. +
T Consensus 207 Rk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~d 286 (902)
T KOG0104|consen 207 RKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKD 286 (902)
T ss_pred cccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccc
Confidence 43 78899999999999999999984 24789999999999999999999999999999998764 6
Q ss_pred CccCHHHHHHHHHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCC
Q 007552 217 ISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQID 296 (599)
Q Consensus 217 ~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 296 (599)
+..+|++|.+|.++|+++|..||+|..+.+.|+++.+++|+..+|||++||++|.+++.++..+|.++|..++++..+|+
T Consensus 287 v~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn 366 (902)
T KOG0104|consen 287 VHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEIN 366 (902)
T ss_pred cccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCCCCCCCcceEEeeecccccceEeeCC----
Q 007552 297 EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGG---- 372 (599)
Q Consensus 297 ~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~s~gi~~~~~---- 372 (599)
.|+|+||+||+|.||+.|.+..+..++...+|+|||+++||+++||.||.. |+++++++.|.+.|+|-++....
T Consensus 367 ~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSks--FKvKpf~V~D~~~yp~~v~f~~~~~i~ 444 (902)
T KOG0104|consen 367 QVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKS--FKVKPFNVVDASVYPYLVEFETEPGIH 444 (902)
T ss_pred eeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccc--ccccceeeeecccccEEEEeccCCccc
Confidence 999999999999999999999988899999999999999999999999988 77999999999998887764332
Q ss_pred ----eeEEEEeCCCCCCCcceeeeeeccCCceeEEEEEEecCCcccccCccceeEEecCCCCCCC-------CCCeEEEE
Q 007552 373 ----VMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPR-------GTPQIEVT 441 (599)
Q Consensus 373 ----~~~~ii~~g~~iP~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~-------g~~~i~v~ 441 (599)
....+|+++.++|..+..+|+.+.|+ +.+.+-.|.-. ..+-.+++.++....+ ...-|+++
T Consensus 445 ~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~ 516 (902)
T KOG0104|consen 445 ALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKAS 516 (902)
T ss_pred ccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccEEEEecchHHHHhcccchhhccCceEE
Confidence 22358999999999998888777654 33332222210 2233677766654221 13359999
Q ss_pred EEEcCCceEEEEEeec---------------------CC-----------------------Cc-e--------------
Q 007552 442 FEVDANGILNVKAEDK---------------------GT-----------------------GK-S-------------- 462 (599)
Q Consensus 442 f~~d~~g~l~v~~~~~---------------------~~-----------------------~~-~-------------- 462 (599)
|.+|.+|++.|+..+. .+ +. +
T Consensus 517 F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~ 596 (902)
T KOG0104|consen 517 FSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQED 596 (902)
T ss_pred EEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCccccccccccccccccccc
Confidence 9999999998864210 00 00 0
Q ss_pred -----------------------eEEEEecC---CCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHH
Q 007552 463 -----------------------EKITITND---KGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQ 516 (599)
Q Consensus 463 -----------------------~~~~i~~~---~~~l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~ 516 (599)
..+.|... ...|+...++....+++.+..+|+.+.++.++.|+||+|+|++.++
T Consensus 597 k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~ 676 (902)
T KOG0104|consen 597 KTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDK 676 (902)
T ss_pred cccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01344433 2358899999999999999999999999999999999999999999
Q ss_pred hchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007552 517 INDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQR 578 (599)
Q Consensus 517 l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~-~~~t~~~~~~kl~~L~~~~~~i~~r~~e~ 578 (599)
|.+++ |.+|.+++|+..|.+.+..+.+||+++ .+..+++|.+++.+|+++...+..|..++
T Consensus 677 l~d~e-y~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~ 738 (902)
T KOG0104|consen 677 LDDDE-YAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEER 738 (902)
T ss_pred hcCch-HhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99965 999999999999999999999999998 67899999999999999999999998775
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=3.4e-43 Score=375.37 Aligned_cols=258 Identities=28% Similarity=0.412 Sum_probs=221.6
Q ss_pred EechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeecccchHHHHHHhc
Q 007552 78 VFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFN-----DAQRQA---TKDAGIIAGLNVARIINEPTAAAIAYG 149 (599)
Q Consensus 78 ~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~ 149 (599)
...++++++++|++|++.++.++|.++.++|||||++|+ +.||++ +++||+.||++++++++||+|||++|+
T Consensus 123 ~~~~e~l~a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~ 202 (450)
T PRK11678 123 VALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFE 202 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhc
Confidence 355999999999999999999999999999999999998 778766 699999999999999999999999998
Q ss_pred cccCCCccEEEEEEcCCCEEEEEEEEEeCC-------eEEEEEecCCCCCccchHhHHHH-HHHHHHHHh----hcCCCC
Q 007552 150 LDKKGGEKNILVFDLGGGTFDVSILTIDNG-------VFEVLSTNGDTHLGGEDFDQRVM-EYFIKLIKK----KHGKDI 217 (599)
Q Consensus 150 ~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~-------~~~v~~~~~~~~lGG~~iD~~l~-~~~~~~~~~----~~~~~~ 217 (599)
.... .+..+||+|+||||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|.. +++.++
T Consensus 203 ~~~~-~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~ 280 (450)
T PRK11678 203 ATLT-EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIAL 280 (450)
T ss_pred cccC-CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcC
Confidence 7543 4788999999999999999998754 368999988 6899999999998 677777742 122111
Q ss_pred -----------------------------------ccCHHHH------------HHHHHHHHHHHHHccCCcceEEEEec
Q 007552 218 -----------------------------------SKDKRAI------------GKLRREAERAKRALSSQHQVRVEIES 250 (599)
Q Consensus 218 -----------------------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~ 250 (599)
..+++.+ .+|+.+||++|+.||.+..+.+.++.
T Consensus 281 p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~ 360 (450)
T PRK11678 281 PSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDF 360 (450)
T ss_pred cchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecc
Confidence 0123223 36889999999999999999999886
Q ss_pred ccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCc
Q 007552 251 LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPD 330 (599)
Q Consensus 251 l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~ 330 (599)
+. .++...|||++|+++++|+++++..+|+++|+++++. ++.|+||||+|++|.|++.+++.||+.++. ..+|.
T Consensus 361 ~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~ 434 (450)
T PRK11678 361 IS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDF 434 (450)
T ss_pred cC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCc
Confidence 53 4578999999999999999999999999999999875 579999999999999999999999665554 56999
Q ss_pred hhhhchHHHhhhh
Q 007552 331 EAVAYGAAVQGGI 343 (599)
Q Consensus 331 ~aVA~GAa~~a~~ 343 (599)
++||.|+|++|..
T Consensus 435 ~sVa~Gla~~a~~ 447 (450)
T PRK11678 435 GSVTAGLARWAQV 447 (450)
T ss_pred chHHHHHHHHHHh
Confidence 9999999999864
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=4.6e-34 Score=297.90 Aligned_cols=286 Identities=23% Similarity=0.313 Sum_probs=220.9
Q ss_pred cCceEEecCCCc---ccccccchhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEEeCCceeEechHHHHHHHHHHH
Q 007552 16 CLFICVDFSPLK---KKGGWRLIEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKM 92 (599)
Q Consensus 16 ~~p~~v~~~~~~---~~~~~~~k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~~l 92 (599)
.+|++|++.... ...|...+++.|+.-....+ ..| +.+| .+...++...+|+++
T Consensus 27 ~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~-----~~p---------------i~~G---~i~d~~~~~~~l~~~ 83 (336)
T PRK13928 27 NEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA-----IRP---------------LRDG---VIADYDVTEKMLKYF 83 (336)
T ss_pred ccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE-----Ecc---------------CCCC---eEecHHHHHHHHHHH
Confidence 479999998643 24577888888875222110 011 1134 334455677778887
Q ss_pred HHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEE
Q 007552 93 KETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 172 (599)
Q Consensus 93 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvs 172 (599)
.+.+..........+|||||++|+..||+++++|++.||++.+.+++||+|||++|+.... .+..++|||+||||||++
T Consensus 84 ~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvs 162 (336)
T PRK13928 84 INKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIA 162 (336)
T ss_pred HHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEE
Confidence 7655432222344799999999999999999999999999999999999999999988654 366799999999999999
Q ss_pred EEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC----cceEEEE
Q 007552 173 ILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ----HQVRVEI 248 (599)
Q Consensus 173 v~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----~~~~i~i 248 (599)
+++..... ..++..+||++||+.|++++..+++.. .. ...||++|+.++.. ....+.+
T Consensus 163 vv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~----~~---------~~~ae~lK~~~~~~~~~~~~~~~~v 224 (336)
T PRK13928 163 VLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLL----IG---------ERTAEEIKIKIGTAFPGAREEEMEI 224 (336)
T ss_pred EEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchh----cC---------HHHHHHHHHHhcccccccCCcEEEE
Confidence 99875322 345789999999999999988665322 11 25799999998653 1223333
Q ss_pred e--cccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccCCC-eEEEecCCCCcHHHHHHHHhHcCCCCC
Q 007552 249 E--SLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAG--LEKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEP 323 (599)
Q Consensus 249 ~--~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~ViLvGG~srip~v~~~l~~~f~~~~i 323 (599)
. .+..+.+..+.|+|++|++++.+.++++.+.|+++|+.++ +....++ .|+|+||+|++|.|++++++.| +.++
T Consensus 225 ~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v 303 (336)
T PRK13928 225 RGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPV 303 (336)
T ss_pred ecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCc
Confidence 2 2344566778999999999999999999999999999985 4456677 7999999999999999999999 6788
Q ss_pred CCCCCCchhhhchHHHhhhhh
Q 007552 324 NKGVNPDEAVAYGAAVQGGIL 344 (599)
Q Consensus 324 ~~~~~p~~aVA~GAa~~a~~l 344 (599)
....||++|||+|||+++..+
T Consensus 304 ~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 304 YIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred eecCCHHHHHHHHHHHHHhch
Confidence 888899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1e-32 Score=287.10 Aligned_cols=283 Identities=22% Similarity=0.320 Sum_probs=223.0
Q ss_pred cCceEEecCCCcc---cccccchhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEEeCCceeEechHHHHHHHHHHH
Q 007552 16 CLFICVDFSPLKK---KGGWRLIEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKM 92 (599)
Q Consensus 16 ~~p~~v~~~~~~~---~~~~~~k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~~l 92 (599)
..|++|++..... ..|...+.++|+.-..-.+. .| +.+| .+..-++++.+|+++
T Consensus 28 ~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~-----~p---------------i~~G---~I~d~d~~~~~l~~~ 84 (335)
T PRK13929 28 NEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV-----RP---------------MKDG---VIADYDMTTDLLKQI 84 (335)
T ss_pred cCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE-----ec---------------CCCC---ccCCHHHHHHHHHHH
Confidence 4799999975543 56777887777653221110 11 1134 233347889999999
Q ss_pred HHHHHHHhCCCcc--cEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEE
Q 007552 93 KETAEAFLGKKIK--DAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFD 170 (599)
Q Consensus 93 ~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~d 170 (599)
+..++..++..+. .+|||||++|+..||+++.+|++.||++++.+++||+|||++|+.... .+..++|+|+||||||
T Consensus 85 ~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~ 163 (335)
T PRK13929 85 MKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTE 163 (335)
T ss_pred HHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEE
Confidence 9999888876554 799999999999999999999999999999999999999999987654 3678999999999999
Q ss_pred EEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC----cceEE
Q 007552 171 VSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ----HQVRV 246 (599)
Q Consensus 171 vsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----~~~~i 246 (599)
++++.+.+.. ..++..+||.+||+.|.+++...+ +.... ...||++|+.++.. ....+
T Consensus 164 v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~ 225 (335)
T PRK13929 164 VAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETM 225 (335)
T ss_pred EEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceE
Confidence 9999865422 345578999999999999987544 33321 15899999999863 12223
Q ss_pred EEe--cccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccCCC-eEEEecCCCCcHHHHHHHHhHcCCC
Q 007552 247 EIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAG--LEKNQID-EIVLVGGSTRIPKVQQLLKDYFDGK 321 (599)
Q Consensus 247 ~i~--~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~ViLvGG~srip~v~~~l~~~f~~~ 321 (599)
.+. ++..+....+.+++++|++++.+.+.++.+.|.++|+++. +....++ .|+|+||+|++|.+++++++.| +.
T Consensus 226 ~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~ 304 (335)
T PRK13929 226 EVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VV 304 (335)
T ss_pred EEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CC
Confidence 332 2334556789999999999999999999999999999975 3346677 6999999999999999999999 78
Q ss_pred CCCCCCCCchhhhchHHHhh
Q 007552 322 EPNKGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 322 ~i~~~~~p~~aVA~GAa~~a 341 (599)
++....||+++||.||+..-
T Consensus 305 ~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 305 PVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred CceeCCCHHHHHHHHHHHHH
Confidence 88888899999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.4e-31 Score=277.73 Aligned_cols=238 Identities=25% Similarity=0.384 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEc
Q 007552 85 SAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDL 164 (599)
Q Consensus 85 ~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~ 164 (599)
...+|+++......... ....+|+|||++|+..||+++++|++.||++.+.+++||+|||++|+.... .+..++|||+
T Consensus 78 ~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lvvDi 155 (334)
T PRK13927 78 TEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT-EPTGSMVVDI 155 (334)
T ss_pred HHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc-CCCeEEEEEe
Confidence 34444444433322222 124899999999999999999999999999999999999999999987544 3567899999
Q ss_pred CCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCcc-
Q 007552 165 GGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ- 243 (599)
Q Consensus 165 Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~- 243 (599)
||||||+++++..+.. ..+...+||++||+.|.+++.+++ +.... ...||++|+.++....
T Consensus 156 Gggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~----~~~~~---------~~~ae~iK~~~~~~~~~ 217 (334)
T PRK13927 156 GGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNY----NLLIG---------ERTAERIKIEIGSAYPG 217 (334)
T ss_pred CCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHh----CcCcC---------HHHHHHHHHHhhccCCC
Confidence 9999999999876433 234568999999999999987554 22221 1578999999875422
Q ss_pred ---eEEEE--ecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccCCC-eEEEecCCCCcHHHHHHHH
Q 007552 244 ---VRVEI--ESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLK 315 (599)
Q Consensus 244 ---~~i~i--~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~srip~v~~~l~ 315 (599)
..+.+ +.+..+.+..+.|+|++|++++.+.++++.+.|.++|+++... ...++ .|+|+||+|++|.++++|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~ 297 (334)
T PRK13927 218 DEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLS 297 (334)
T ss_pred CCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHH
Confidence 22333 2333456668899999999999999999999999999987532 23344 5999999999999999999
Q ss_pred hHcCCCCCCCCCCCchhhhchHHHhhhh
Q 007552 316 DYFDGKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 316 ~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
+.| +.++....+|+++||+||++++..
T Consensus 298 ~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 298 EET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 999 678888889999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.97 E-value=3.3e-30 Score=268.68 Aligned_cols=284 Identities=24% Similarity=0.327 Sum_probs=206.5
Q ss_pred cCceEEecCCC-----c--ccccccchhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEEeCCceeEe-chHHHHHH
Q 007552 16 CLFICVDFSPL-----K--KKGGWRLIEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVF-SPEEISAM 87 (599)
Q Consensus 16 ~~p~~v~~~~~-----~--~~~~~~~k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~~~g~~~~~-s~e~v~a~ 87 (599)
.+|++|++... + ...|...++++|+....-.+ ..|. . +|....+ ..++++..
T Consensus 26 ~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~-----~~pi----~-----------~G~i~d~~~~~~~~~~ 85 (333)
T TIGR00904 26 NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA-----IRPM----K-----------DGVIADFEVTEKMIKY 85 (333)
T ss_pred ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE-----EecC----C-----------CCEEEcHHHHHHHHHH
Confidence 58999999744 2 33566777777764322111 1121 1 3311111 12344444
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCC
Q 007552 88 ILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGG 167 (599)
Q Consensus 88 ~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Ggg 167 (599)
+|..+.+.. +.....+|+|||++|+..||+++++|++.||++.+.+++||+|||++|+.... .+..++|||+|||
T Consensus 86 ~l~~~~~~~----~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~g 160 (333)
T TIGR00904 86 FIKQVHSRK----SFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGG 160 (333)
T ss_pred HHHHHhccc----ccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCC
Confidence 444433221 22223899999999999999999999999999999999999999999987543 3567899999999
Q ss_pred EEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCcc----
Q 007552 168 TFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ---- 243 (599)
Q Consensus 168 t~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---- 243 (599)
|||+++++..+.. ..++..+||++||+.|++++..++ +.... +..||++|+.++....
T Consensus 161 ttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~ 222 (333)
T TIGR00904 161 TTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDE 222 (333)
T ss_pred eEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHHh----cccCC---------HHHHHHHHHHHhcccccccc
Confidence 9999999876432 245568999999999999987654 22221 2579999999875321
Q ss_pred -eEEEEec--ccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCC-C-eEEEecCCCCcHHHHHHHHhH
Q 007552 244 -VRVEIES--LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK-NQI-D-EIVLVGGSTRIPKVQQLLKDY 317 (599)
Q Consensus 244 -~~i~i~~--l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~srip~v~~~l~~~ 317 (599)
..+.+.. ...+......|++++|.+++.+.++++.+.|.+.|+.+.... .++ + .|+|+||+|++|.++++|++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~ 302 (333)
T TIGR00904 223 PRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKE 302 (333)
T ss_pred ccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHH
Confidence 1222211 112334567899999999999999999999999999876431 233 3 699999999999999999999
Q ss_pred cCCCCCCCCCCCchhhhchHHHhhhh
Q 007552 318 FDGKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 318 f~~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
| +.++....||+++||.||++++..
T Consensus 303 ~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 303 T-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred H-CCCceecCChHHHHHHHHHHHHhC
Confidence 9 788888899999999999998753
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.97 E-value=6.4e-30 Score=267.15 Aligned_cols=241 Identities=24% Similarity=0.347 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEE
Q 007552 83 EISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVF 162 (599)
Q Consensus 83 ~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVv 162 (599)
+....+|+++.+.+..........+|+|+|++|+..+|+.+.+|++.+|++.+.+++||+|||++|+..... +..++||
T Consensus 79 ~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~-~~~~lVv 157 (335)
T PRK13930 79 EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTE-PVGNMVV 157 (335)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCC-CCceEEE
Confidence 456777777776555433444678999999999999999999999999999999999999999999875442 4567999
Q ss_pred EcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCc
Q 007552 163 DLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH 242 (599)
Q Consensus 163 D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 242 (599)
|+||||||++++...... ..+...+||.+||+.|.+++.+++ +.... ...||++|+.++...
T Consensus 158 DiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~ 219 (335)
T PRK13930 158 DIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKY----NLLIG---------ERTAEEIKIEIGSAY 219 (335)
T ss_pred EeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHh----CCCCC---------HHHHHHHHHHhhcCc
Confidence 999999999999865422 245679999999999999987654 33221 157899999997543
Q ss_pred c----eEEEEe--cccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccCCCe-EEEecCCCCcHHHHHH
Q 007552 243 Q----VRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLE--KNQIDE-IVLVGGSTRIPKVQQL 313 (599)
Q Consensus 243 ~----~~i~i~--~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-ViLvGG~srip~v~~~ 313 (599)
. ..+.+. .+..+.+..+.|++++|++++.+.++++.+.|.++|+.+... ...++. |+|+||+|++|.++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~ 299 (335)
T PRK13930 220 PLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKL 299 (335)
T ss_pred CCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHH
Confidence 2 223332 223345567889999999999999999999999999986422 233454 9999999999999999
Q ss_pred HHhHcCCCCCCCCCCCchhhhchHHHhhhh
Q 007552 314 LKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 314 l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
|++.| +.++....+|+++||+||++.+..
T Consensus 300 l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 300 LSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 99999 677888889999999999999864
No 26
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=2.1e-29 Score=248.77 Aligned_cols=204 Identities=25% Similarity=0.354 Sum_probs=175.7
Q ss_pred EechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCcc
Q 007552 78 VFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEK 157 (599)
Q Consensus 78 ~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~ 157 (599)
.+.--+..+++|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 56667788999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred EEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Q 007552 158 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRA 237 (599)
Q Consensus 158 ~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 237 (599)
..+|+|+||||||+++++. +.+. . ..+..+||++||+.|.+.+ +++. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~--G~i~--~-~~~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKK--GKVI--Y-SADEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEEC--CeEE--E-EEeeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 2599999999999999763 3322 2 3457899999999886543 2222 689999987
Q ss_pred ccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhH
Q 007552 238 LSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY 317 (599)
Q Consensus 238 Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~ 317 (599)
++. .+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|++++.+++.
T Consensus 165 ~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 541 45677899999999999999999863 467899999999999999999999
Q ss_pred cCCCCCCCCCCCchhhhchHHH
Q 007552 318 FDGKEPNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 318 f~~~~i~~~~~p~~aVA~GAa~ 339 (599)
| +.++..+.||++++|.|||+
T Consensus 218 l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 L-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred h-CCCcccCCCCCeehhheeec
Confidence 9 78888899999999999986
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.95 E-value=3.5e-27 Score=240.26 Aligned_cols=282 Identities=24% Similarity=0.338 Sum_probs=203.6
Q ss_pred cCceEEecCCCccc---ccccchhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEEeCCceeEechHHHHHHHHHHH
Q 007552 16 CLFICVDFSPLKKK---GGWRLIEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKM 92 (599)
Q Consensus 16 ~~p~~v~~~~~~~~---~~~~~k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~~l 92 (599)
..|++|++..+... .|...+.++||.-+.-.+ .+| ..+| .+.-.++...+|+++
T Consensus 25 ~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-----~~P---------------l~~G---vI~D~~~~~~~l~~~ 81 (326)
T PF06723_consen 25 NEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-----VRP---------------LKDG---VIADYEAAEEMLRYF 81 (326)
T ss_dssp EEES-EEEETTT--EEEESHHHHTTTTS-GTTEEE-----E-S---------------EETT---EESSHHHHHHHHHHH
T ss_pred ecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE-----Ecc---------------ccCC---cccCHHHHHHHHHHH
Confidence 45999998765333 367888999986443211 111 1156 344456788888888
Q ss_pred HHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEE
Q 007552 93 KETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 172 (599)
Q Consensus 93 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvs 172 (599)
.+.+.......-..++|+||+.-|+.+|+++.+|+..||...+.+++||.|||+..+++-.. +...||+|+||||||++
T Consensus 82 l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~-~~g~miVDIG~GtTdia 160 (326)
T PF06723_consen 82 LKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIFE-PRGSMIVDIGGGTTDIA 160 (326)
T ss_dssp HHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTS-SS-EEEEEE-SS-EEEE
T ss_pred HHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCCC-CCceEEEEECCCeEEEE
Confidence 88776532223458999999999999999999999999999999999999999999887654 67889999999999999
Q ss_pred EEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCc----c--eEE
Q 007552 173 ILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----Q--VRV 246 (599)
Q Consensus 173 v~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~--~~i 246 (599)
++...+ + .. ......||++||++|.+|+.+++. ..+.. ..||++|+.++... . ..+
T Consensus 161 vislgg--i--v~-s~si~~gG~~~DeaI~~~ir~~y~----l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v 222 (326)
T PF06723_consen 161 VISLGG--I--VA-SRSIRIGGDDIDEAIIRYIREKYN----LLIGE---------RTAEKIKIEIGSASPPEEEESMEV 222 (326)
T ss_dssp EEETTE--E--EE-EEEES-SHHHHHHHHHHHHHHHHS----EE--H---------HHHHHHHHHH-BSS--HHHHEEEE
T ss_pred EEECCC--E--EE-EEEEEecCcchhHHHHHHHHHhhC----cccCH---------HHHHHHHHhcceeeccCCCceEEE
Confidence 996333 2 11 223589999999999999777663 33332 68999999987542 2 334
Q ss_pred EEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---CC--CeEEEecCCCCcHHHHHHHHhHcCCC
Q 007552 247 EIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKN---QI--DEIVLVGGSTRIPKVQQLLKDYFDGK 321 (599)
Q Consensus 247 ~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~---~i--~~ViLvGG~srip~v~~~l~~~f~~~ 321 (599)
.-.++..|....+.|+.+++.+.+.+.+.+|.+.|+++|++. +++ || +.|+|+||+|+++.+.++|++.+ +.
T Consensus 223 ~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~ 299 (326)
T PF06723_consen 223 RGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEET-GV 299 (326)
T ss_dssp EEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS
T ss_pred ECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CC
Confidence 434567788899999999999999999999999999999973 322 22 46999999999999999999999 89
Q ss_pred CCCCCCCCchhhhchHHHhhh
Q 007552 322 EPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 322 ~i~~~~~p~~aVA~GAa~~a~ 342 (599)
++....+|..|||.||.....
T Consensus 300 pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 300 PVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp -EEE-SSTTTHHHHHHHHTTC
T ss_pred CEEEcCCHHHHHHHHHHHHHh
Confidence 999999999999999997764
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.94 E-value=6.6e-26 Score=227.80 Aligned_cols=205 Identities=27% Similarity=0.392 Sum_probs=176.0
Q ss_pred echHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccE
Q 007552 79 FSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKN 158 (599)
Q Consensus 79 ~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~ 158 (599)
+.-.+.....|+++++.++.+++.++..++++||++|+..+|.++.+|++.||+++..+++||.|++.+|... .
T Consensus 63 i~di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~ 136 (267)
T PRK15080 63 VVDFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------N 136 (267)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------C
Confidence 3336677889999999999999988999999999999999999999999999999999999999999987653 2
Q ss_pred EEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHc
Q 007552 159 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRAL 238 (599)
Q Consensus 159 vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 238 (599)
.+++|+|||||+++++. ++.+. . .++..+||++||+.|++++ +.+ +.+||++|+.+
T Consensus 137 ~~vvDIGggtt~i~v~~--~g~~~--~-~~~~~~GG~~it~~Ia~~l--------~i~-----------~~eAE~lK~~~ 192 (267)
T PRK15080 137 GAVVDIGGGTTGISILK--DGKVV--Y-SADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEQYKRDP 192 (267)
T ss_pred cEEEEeCCCcEEEEEEE--CCeEE--E-EecccCchHHHHHHHHHHh--------CCC-----------HHHHHHHHhcc
Confidence 59999999999999975 44322 1 2467999999999998764 222 26789999865
Q ss_pred cCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 239 SSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 239 s~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
+ +++++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|
T Consensus 193 ~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 193 K----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred C----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh
Confidence 3 357789999999999999999999863 6789999999999999999999999
Q ss_pred CCCCCCCCCCCchhhhchHHHhh
Q 007552 319 DGKEPNKGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 319 ~~~~i~~~~~p~~aVA~GAa~~a 341 (599)
+.++....+|+.++|.|||++|
T Consensus 246 -g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 -GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred -CCCcccCCCchHHHHHHHHhhC
Confidence 7888889999999999999875
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.94 E-value=3.3e-25 Score=217.03 Aligned_cols=287 Identities=23% Similarity=0.302 Sum_probs=226.5
Q ss_pred cCceEEecCCC--cc---cccccchhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEEeCCceeEechHHHHHHHHH
Q 007552 16 CLFICVDFSPL--KK---KGGWRLIEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILT 90 (599)
Q Consensus 16 ~~p~~v~~~~~--~~---~~~~~~k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~ 90 (599)
.-|++||.... .. ..|.+.|+++||...+... ....++| .+.--+++..+|+
T Consensus 30 ~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a--------------------iRPmkdG---VIAd~~~te~ml~ 86 (342)
T COG1077 30 NEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA--------------------IRPMKDG---VIADFEVTELMLK 86 (342)
T ss_pred cCceEEEEeecCCCceEEEehHHHHHHhccCCCCceE--------------------EeecCCc---EeecHHHHHHHHH
Confidence 35999999773 22 2367999999998665321 1112255 4555667888888
Q ss_pred HHHHHHHHHhC-CCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEE
Q 007552 91 KMKETAEAFLG-KKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTF 169 (599)
Q Consensus 91 ~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~ 169 (599)
|+++....... .....++++||..-++.+|+++++|++.||...+.+++||.|||+..++.-.. +..-||||+|||||
T Consensus 87 ~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~e-p~G~mvvDIGgGTT 165 (342)
T COG1077 87 YFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIME-PTGSMVVDIGGGTT 165 (342)
T ss_pred HHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccC-CCCCEEEEeCCCce
Confidence 88888764333 34457999999999999999999999999999999999999999988776554 45669999999999
Q ss_pred EEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC--------
Q 007552 170 DVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-------- 241 (599)
Q Consensus 170 dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-------- 241 (599)
|++++.+.+-. +.....+||+.||+.+.+|+.++| ++-+.+ +.+|++|+.....
T Consensus 166 evaVISlggiv-----~~~Sirv~GD~~De~Ii~yvr~~~----nl~IGe---------~taE~iK~eiG~a~~~~~~~~ 227 (342)
T COG1077 166 EVAVISLGGIV-----SSSSVRVGGDKMDEAIIVYVRKKY----NLLIGE---------RTAEKIKIEIGSAYPEEEDEE 227 (342)
T ss_pred eEEEEEecCEE-----EEeeEEEecchhhHHHHHHHHHHh----CeeecH---------HHHHHHHHHhcccccccCCcc
Confidence 99999977654 234468999999999999976655 444433 5688888876543
Q ss_pred cceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccCCCe-EEEecCCCCcHHHHHHHHhHc
Q 007552 242 HQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDA--GLEKNQIDE-IVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 242 ~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~-ViLvGG~srip~v~~~l~~~f 318 (599)
.+.++.-.++..|..-.++++..++.+.+++.+++|++.++..|++. .+..+-++. ++|+||+|.+..+.+.+++..
T Consensus 228 ~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et 307 (342)
T COG1077 228 LEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET 307 (342)
T ss_pred ceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc
Confidence 22445556777888889999999999999999999999999999984 344444555 999999999999999999998
Q ss_pred CCCCCCCCCCCchhhhchHHHhhhhhc
Q 007552 319 DGKEPNKGVNPDEAVAYGAAVQGGILS 345 (599)
Q Consensus 319 ~~~~i~~~~~p~~aVA~GAa~~a~~ls 345 (599)
+.++....+|-.|||.|+......+.
T Consensus 308 -~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 308 -GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred -CCeEEECCChHHHHHhccchhhhhhH
Confidence 78888889999999999998877654
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.86 E-value=1.5e-20 Score=198.93 Aligned_cols=193 Identities=23% Similarity=0.324 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHh
Q 007552 119 QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 198 (599)
Q Consensus 119 qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD 198 (599)
..+.+.+|++.||+++..++.||.|+|++|.... .....++|+|+||||||++++. .+.... .....+||++||
T Consensus 159 ~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-~~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i~~GG~~it 232 (371)
T TIGR01174 159 ILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-EKELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVIPIGGNHIT 232 (371)
T ss_pred HHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-hhcCCEEEEEeCCCcEEEEEEE--CCEEEE---EeeecchHHHHH
Confidence 3556778999999999999999999999885432 2456799999999999999986 333221 234689999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC------cceEEEEecccCCccceeecCHHHHHHHHHH
Q 007552 199 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNND 272 (599)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~ 272 (599)
+.|.+.+ +. .+.+||++|+.++.. ....+.++... .+....++|++|++++.+
T Consensus 233 ~~i~~~l--------~~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~ 291 (371)
T TIGR01174 233 KDIAKAL--------RT-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIEA 291 (371)
T ss_pred HHHHHHh--------CC-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHHH
Confidence 9887642 11 247899999999863 24456665443 456789999999999999
Q ss_pred HHHHHHHHHH-HHHHHhCCCccCCCe-EEEecCCCCcHHHHHHHHhHcCCCCCCC------------CCCCchhhhchHH
Q 007552 273 LFRKTMGPVK-KAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVAYGAA 338 (599)
Q Consensus 273 ~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~srip~v~~~l~~~f~~~~i~~------------~~~p~~aVA~GAa 338 (599)
.++++...|+ +.|++++.. .+++. |+|+||+|++|.+++.+++.| +.++.. .-+|..++|.|.+
T Consensus 292 ~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~ 369 (371)
T TIGR01174 292 RAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNIGGLTEDVNDPEYSTAVGLL 369 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCccCCchhhcCCcHHHHHHHHH
Confidence 9999999997 999998776 56776 999999999999999999999 443311 1267788888877
Q ss_pred Hh
Q 007552 339 VQ 340 (599)
Q Consensus 339 ~~ 340 (599)
+|
T Consensus 370 ~~ 371 (371)
T TIGR01174 370 LY 371 (371)
T ss_pred hC
Confidence 64
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.81 E-value=1.1e-18 Score=187.09 Aligned_cols=194 Identities=21% Similarity=0.276 Sum_probs=147.2
Q ss_pred HHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHH
Q 007552 121 QATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 200 (599)
Q Consensus 121 ~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~ 200 (599)
+.+..|++.||+++..++.||.|+|.++... ..++..++|+|+||||||++++. ++.+. ......+||++|++.
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~-~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~d 242 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTE-DERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTSD 242 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcCh-hhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHHH
Confidence 3446789999999999999999999988544 33467799999999999999997 44332 233468999999999
Q ss_pred HHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC------cceEEEEecccCCccceeecCHHHHHHHHHHHH
Q 007552 201 VMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNNDLF 274 (599)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~ 274 (599)
|...+. .+ +..||++|+.+... ....+.++.+... ....++|.+|.+++.+.+
T Consensus 243 Ia~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii~~r~ 301 (420)
T PRK09472 243 IAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVIEPRY 301 (420)
T ss_pred HHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHHHHHH
Confidence 875531 11 26899999765431 2345666543322 235889999999999988
Q ss_pred HHHHHHHHHH-------HHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCC------------CCCCchhhhc
Q 007552 275 RKTMGPVKKA-------MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVAY 335 (599)
Q Consensus 275 ~~i~~~i~~~-------l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~------------~~~p~~aVA~ 335 (599)
+++++.|++. |..+++....++.|+|+||+|++|.|++.+++.| +.++.. ..+|..|+|.
T Consensus 302 ~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~~P~~ata~ 380 (420)
T PRK09472 302 TELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQEPYYSTAV 380 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcCCcHHHHHH
Confidence 8887777654 4566777778899999999999999999999999 443321 2489999999
Q ss_pred hHHHhhh
Q 007552 336 GAAVQGG 342 (599)
Q Consensus 336 GAa~~a~ 342 (599)
|.++++.
T Consensus 381 Gl~~~~~ 387 (420)
T PRK09472 381 GLLHYGK 387 (420)
T ss_pred HHHHHhh
Confidence 9999976
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.64 E-value=2.7e-15 Score=157.03 Aligned_cols=206 Identities=27% Similarity=0.433 Sum_probs=163.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEe
Q 007552 107 AVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLST 186 (599)
Q Consensus 107 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~ 186 (599)
.++|+|..+ -+.+.+|.+.+|+++..++-+|.|+|.+. +....+.-.++++||||||||+++++ ++.+. +
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~-L~~dEkelGv~lIDiG~GTTdIai~~--~G~l~---~ 227 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAV-LTEDEKELGVALIDIGGGTTDIAIYK--NGALR---Y 227 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhc-cCcccHhcCeEEEEeCCCcEEEEEEE--CCEEE---E
Confidence 467777654 47788999999999999999999999865 44455678899999999999999987 44332 2
Q ss_pred cCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC------cceEEEEecccCCccceee
Q 007552 187 NGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEP 260 (599)
Q Consensus 187 ~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~l~~~~~~~~~ 260 (599)
.+..++||++++..|..-|. .+. ..||+.|...... ....+.++...+ +....
T Consensus 228 ~~~ipvgG~~vT~DIa~~l~--------t~~-----------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~--~~~~~ 286 (418)
T COG0849 228 TGVIPVGGDHVTKDIAKGLK--------TPF-----------EEAERIKIKYGSALISLADDEETIEVPSVGS--DIPRQ 286 (418)
T ss_pred EeeEeeCccHHHHHHHHHhC--------CCH-----------HHHHHHHHHcCccccCcCCCcceEecccCCC--cccch
Confidence 34478999999999986643 221 6889999887543 234466665433 33678
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCC--C----------CCC
Q 007552 261 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN--K----------GVN 328 (599)
Q Consensus 261 itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~--~----------~~~ 328 (599)
+||..+.+++++.+.+++.+++..|++.+....-...|+|+||++.+|.+.+..++.|+ .++. . ..+
T Consensus 287 ~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 287 VTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccC
Confidence 99999999999999999999999999999887778899999999999999999999993 3221 1 236
Q ss_pred CchhhhchHHHhhhhh
Q 007552 329 PDEAVAYGAAVQGGIL 344 (599)
Q Consensus 329 p~~aVA~GAa~~a~~l 344 (599)
|..+.|.|..++++.+
T Consensus 366 p~fs~avGl~~~~~~~ 381 (418)
T COG0849 366 PAFSTAVGLLLYGALM 381 (418)
T ss_pred chhhhhHHHHHHHhhc
Confidence 8999999999998753
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.52 E-value=1.2e-14 Score=132.58 Aligned_cols=223 Identities=27% Similarity=0.371 Sum_probs=166.7
Q ss_pred EEEecCCceEEEEEE-----eCCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcC
Q 007552 57 KIVNRDGKPYIQVQI-----RDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAG 131 (599)
Q Consensus 57 ~~v~~~g~~~~~v~~-----~~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AG 131 (599)
-++++||.|...+.- .+| ..+..-+ .-.+.+.+++.+++.+|..+.+..-++|+.--....+...+..+.||
T Consensus 44 ~vlD~d~~Pvag~~~~advVRDG--iVvdf~e-aveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAG 120 (277)
T COG4820 44 MVLDRDGQPVAGCLDWADVVRDG--IVVDFFE-AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAG 120 (277)
T ss_pred EEEcCCCCeEEEEehhhhhhccc--eEEehhh-HHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccC
Confidence 344677777665431 144 3333322 23567899999999999999999999999886666778888899999
Q ss_pred CceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHh
Q 007552 132 LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKK 211 (599)
Q Consensus 132 l~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~ 211 (599)
++++.+++||+|||.-.+++. -.|+|+|||||-+++++-.+-. +..|...||..++..|+-+
T Consensus 121 levl~vlDEPTAaa~vL~l~d------g~VVDiGGGTTGIsi~kkGkVi-----y~ADEpTGGtHmtLvlAG~------- 182 (277)
T COG4820 121 LEVLHVLDEPTAAADVLQLDD------GGVVDIGGGTTGISIVKKGKVI-----YSADEPTGGTHMTLVLAGN------- 182 (277)
T ss_pred ceeeeecCCchhHHHHhccCC------CcEEEeCCCcceeEEEEcCcEE-----EeccCCCCceeEEEEEecc-------
Confidence 999999999999996555443 3799999999999999844433 3456889999998766533
Q ss_pred hcCCCCccCHHHHHHHHHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 007552 212 KHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLE 291 (599)
Q Consensus 212 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~ 291 (599)
|++++ ++||..|+.--.. ++.-..++|++++..+.+.+.++..
T Consensus 183 -ygi~~-----------EeAE~~Kr~~k~~----------------------~Eif~~v~PV~eKMAeIv~~hie~~--- 225 (277)
T COG4820 183 -YGISL-----------EEAEQYKRGHKKG----------------------EEIFPVVKPVYEKMAEIVARHIEGQ--- 225 (277)
T ss_pred -cCcCH-----------hHHHHhhhccccc----------------------hhcccchhHHHHHHHHHHHHHhccC---
Confidence 45544 5677777532111 1122346789999999999998874
Q ss_pred ccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHh
Q 007552 292 KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 340 (599)
Q Consensus 292 ~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 340 (599)
.+..+.|+||+|.-|.+.+.+++.| +.++..+..|....-.|-|+-
T Consensus 226 --~i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 226 --GITDLWLVGGACMQPGVEELFEKQL-ALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred --CCcceEEecccccCccHHHHHHHHh-ccccccCCCcceechhhhhhc
Confidence 4677999999999999999999999 888888888877766666643
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.41 E-value=2.2e-12 Score=136.79 Aligned_cols=236 Identities=19% Similarity=0.157 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHH-HHHHcCCceeecccchHHHHHHhccccCCCccEEEE
Q 007552 83 EISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 161 (599)
Q Consensus 83 ~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlV 161 (599)
+....+++++...... ....-..++|++|..++..+|+.+.+ +.+..|++.+.++++|.+|+++++. .+.+|
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lV 147 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR------TTGLV 147 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC------CeEEE
Confidence 3445666665543211 11123579999999999888888866 4677899999999999999998864 57799
Q ss_pred EEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC
Q 007552 162 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ 241 (599)
Q Consensus 162 vD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 241 (599)
||+|+++|+++.+. ++.. +........+||.++|+.|.+++..+.. ..+.. .-...++.+|+.+..-
T Consensus 148 VDiG~~~t~i~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v 214 (371)
T cd00012 148 VDSGDGVTHVVPVY--DGYV-LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYV 214 (371)
T ss_pred EECCCCeeEEEEEE--CCEE-chhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheee
Confidence 99999999998876 3332 2222334689999999999988754321 01111 1123456666654321
Q ss_pred c-----------------ceEEEEecccCCccceeecCHHHH---HHHHHHH-----HHHHHHHHHHHHHHhC--CCccC
Q 007552 242 H-----------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDL-----FRKTMGPVKKAMEDAG--LEKNQ 294 (599)
Q Consensus 242 ~-----------------~~~i~i~~l~~~~~~~~~itr~~f---e~~~~~~-----~~~i~~~i~~~l~~~~--~~~~~ 294 (599)
. ...+. +.++ ..+.++.+.| |.++.|. ...+.+.|.+++.... ....-
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~---lpd~--~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l 289 (371)
T cd00012 215 ALDIEEEQDKSAKETSLLEKTYE---LPDG--RTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDL 289 (371)
T ss_pred cCCHHHHHHhhhccCCccceeEE---CCCC--eEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHH
Confidence 0 00111 1122 2345555433 2344442 2367788888887653 23344
Q ss_pred CCeEEEecCCCCcHHHHHHHHhHcCC---------CCCCCCCCCchhhhchHHHhhhh
Q 007552 295 IDEIVLVGGSTRIPKVQQLLKDYFDG---------KEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 295 i~~ViLvGG~srip~v~~~l~~~f~~---------~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
.+.|+|+||+|++|.+.++|.+.+.. ..+....+|..++-.||+++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 67899999999999999999988731 12335568899999999999864
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.34 E-value=3.7e-11 Score=125.32 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=138.1
Q ss_pred CcccEE--EEeCCCCCHHHH-HHHHHHHHHc------C------CceeecccchHHHHHHhccccC-------CCccEEE
Q 007552 103 KIKDAV--VTVPAYFNDAQR-QATKDAGIIA------G------LNVARIINEPTAAAIAYGLDKK-------GGEKNIL 160 (599)
Q Consensus 103 ~~~~~V--itVPa~~~~~qr-~~l~~Aa~~A------G------l~~~~li~Ep~Aaal~y~~~~~-------~~~~~vl 160 (599)
.+..++ ...|..+-..++ +.+++..... | +..+.+++||.+|.+.+..+.. .....++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 599998854443 6676654221 1 1336689999999887766432 1445789
Q ss_pred EEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccC
Q 007552 161 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 240 (599)
Q Consensus 161 VvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 240 (599)
|+|+|+||||++++. ++.+. ....+....|..++.+.|.+++..+ .++..+. .. ++ +++ |..
T Consensus 189 vIDIG~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~~~--~~---~i----e~~---l~~ 250 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKK---EEGASIT--PY---ML----EKG---LEY 250 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhh---CCCCCCC--HH---HH----HHH---HHc
Confidence 999999999999986 43332 2333446789999998888776432 2333332 11 12 221 211
Q ss_pred CcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCC
Q 007552 241 QHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG 320 (599)
Q Consensus 241 ~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~ 320 (599)
. .+.+. .+.. +.+ ++++.++++++++++...++..+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 11111 1111 222 4567788999999998888888753 3578999999999987 89999999964
Q ss_pred CCCCCCCCCchhhhchHHHhhhhhcC
Q 007552 321 KEPNKGVNPDEAVAYGAAVQGGILSG 346 (599)
Q Consensus 321 ~~i~~~~~p~~aVA~GAa~~a~~ls~ 346 (599)
. ....||..|.|+|...+|..+.+
T Consensus 316 ~--~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 V--EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred e--EEcCChHHHHHHHHHHHHHHHhc
Confidence 4 55679999999999999986654
No 36
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.29 E-value=1.6e-11 Score=130.35 Aligned_cols=237 Identities=18% Similarity=0.150 Sum_probs=149.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCC--cccEEEEeCCCCCHHHHHHHHHHH-HHcCCceeecccchHHHHHHhccccCCCc
Q 007552 80 SPEEISAMILTKMKETAEAFLGKK--IKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGE 156 (599)
Q Consensus 80 s~e~v~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~ 156 (599)
.--+....+++++... .++.. -..++||+|...+..+|+.+.+.+ +..|++.+.++++|.||+++++ .
T Consensus 72 ~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------~ 142 (373)
T smart00268 72 ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG------R 142 (373)
T ss_pred eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC------C
Confidence 3445566777776653 23322 347899999999999999998776 5679999999999999999886 4
Q ss_pred cEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH
Q 007552 157 KNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKR 236 (599)
Q Consensus 157 ~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 236 (599)
.+.+|||+|+++|+++.+. ++.. +........+||.++|+.|.+++...-. .+ ... .-...++.+|+
T Consensus 143 ~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~-~~--~~~-------~~~~~~~~iKe 209 (373)
T smart00268 143 TTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYLKELLSERGY-QF--NSS-------AEFEIVREIKE 209 (373)
T ss_pred CEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHHHHHHHhcCC-CC--CcH-------HHHHHHHHhhh
Confidence 5789999999999999886 3332 2222233689999999999988755100 11 111 11133444554
Q ss_pred HccCC-------------------cceEEEEecccCCccceeecCHHHH---HHHHHHH-----HHHHHHHHHHHHHHhC
Q 007552 237 ALSSQ-------------------HQVRVEIESLFDGIDFSEPLTRARF---EELNNDL-----FRKTMGPVKKAMEDAG 289 (599)
Q Consensus 237 ~Ls~~-------------------~~~~i~i~~l~~~~~~~~~itr~~f---e~~~~~~-----~~~i~~~i~~~l~~~~ 289 (599)
.+..- ....+. +.++..+ .+..+.| |.++.|. ...+.+.|.++|..+.
T Consensus 210 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg~~~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~ 284 (373)
T smart00268 210 KLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDGNTI--KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCD 284 (373)
T ss_pred heeeecCChHHHHHHhhhcccccccceeEE---CCCCCEE--EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCC
Confidence 43211 001111 1223322 3332222 2233332 2356777777777643
Q ss_pred --CCccCCCeEEEecCCCCcHHHHHHHHhHcCC-------CCCCCCCCCchhhhchHHHhhhh
Q 007552 290 --LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 290 --~~~~~i~~ViLvGG~srip~v~~~l~~~f~~-------~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
+...-.+.|+|+||+|++|.+.++|.+.+.. ..+..+.++..++=.||+++|..
T Consensus 285 ~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 285 IDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 1222346799999999999999999887721 12333456677888888888754
No 37
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.20 E-value=4.4e-10 Score=116.49 Aligned_cols=206 Identities=20% Similarity=0.212 Sum_probs=128.6
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeecccchHHHHHHhccccC---CCccEEEEEEcCCCEEE
Q 007552 103 KIKDAVVTVPAYFNDAQRQATKDAGIIA---------GLNVARIINEPTAAAIAYGLDKK---GGEKNILVFDLGGGTFD 170 (599)
Q Consensus 103 ~~~~~VitVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~---~~~~~vlVvD~Gggt~d 170 (599)
.+..+|+..|..+-..+|+.+++...-. -+..+.+++||.+|.+.+..+.. .....++|+|+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3567999999999988999998876531 23447789999999888765321 14567899999999999
Q ss_pred EEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCcceEEEEec
Q 007552 171 VSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIES 250 (599)
Q Consensus 171 vsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~ 250 (599)
+.++. +..+ +....+....|-.++-+.|.+.+. ++++.+...+...+.. . |..... +.+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~----~~~g~~~~~~~~~i~~---~-------l~~g~~--~~~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEIS----KDIGTPAYRDIDRIDL---A-------LRTGKQ--PRI-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHH----hhcCCCCccCHHHHHH---H-------HHhCCc--eee--
Confidence 98774 4443 334455567887777777666644 4455441111111111 1 111110 000
Q ss_pred ccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCc
Q 007552 251 LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPD 330 (599)
Q Consensus 251 l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~ 330 (599)
.+.. +.|+ +.-+.....+++++..+...+. ...+++.|+|+||++. .+++.|++.||...+....||.
T Consensus 240 --~gk~--~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQKP--VDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --ccee--cCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 1111 1122 1112333344444444444332 1245889999999987 5789999999776666678999
Q ss_pred hhhhchHHHhh
Q 007552 331 EAVAYGAAVQG 341 (599)
Q Consensus 331 ~aVA~GAa~~a 341 (599)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999988776
No 38
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.16 E-value=1.1e-09 Score=117.85 Aligned_cols=220 Identities=17% Similarity=0.147 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCC--cccEEEEeCCCCCHHHHHHHHHHH-HHcCCceeecccchHHHHHHhccccCC----C
Q 007552 83 EISAMILTKMKETAEAFLGKK--IKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKG----G 155 (599)
Q Consensus 83 ~v~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~----~ 155 (599)
+....+++++... .+... -..++||.|..++..+|+.+.+.+ +..+++-+.+..+|.+++++++..... .
T Consensus 82 d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 82 DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC
Confidence 4445566654322 22222 235899999999999999997765 445888899999999999876332211 1
Q ss_pred ccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH
Q 007552 156 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAK 235 (599)
Q Consensus 156 ~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 235 (599)
..+-+|||+|+|+|+++.+. +|.. +........+||.++|+.|.+.+.++ +..+... ..+..++.+|
T Consensus 159 ~~tglVVDiG~~~T~i~PV~--~G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iK 225 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVV--DGYV-IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIK 225 (414)
T ss_pred ceeEEEEECCCCceEEEEEE--CCEE-cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHH
Confidence 34569999999999998775 2332 11122235799999999999887542 1112111 0123455566
Q ss_pred HHccCCc-----------------ceEEEEecccCCccceeecCHHHHH---HHHHHHH------HHHHHHHHHHHHHhC
Q 007552 236 RALSSQH-----------------QVRVEIESLFDGIDFSEPLTRARFE---ELNNDLF------RKTMGPVKKAMEDAG 289 (599)
Q Consensus 236 ~~Ls~~~-----------------~~~i~i~~l~~~~~~~~~itr~~fe---~~~~~~~------~~i~~~i~~~l~~~~ 289 (599)
+.++.-. ...+.++....+....+.|..+.|. -++.|-+ ..+.++|.++|.++.
T Consensus 226 e~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~ 305 (414)
T PTZ00280 226 EKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP 305 (414)
T ss_pred HhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC
Confidence 6553210 0112222222234456777777664 3455532 145677777777653
Q ss_pred C--CccCCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 290 L--EKNQIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 290 ~--~~~~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
. ...-.+.|+|+||+|.+|.+.++|++.+
T Consensus 306 ~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 306 IDCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred hhhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 2 2334577999999999999999999877
No 39
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.05 E-value=2.5e-09 Score=112.44 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHHcCCceeecccchHHHHHHhc-----cccCCCcc-EEEEEEcCCCEEEEEEEEEeCCeEEEEEecCC
Q 007552 116 NDAQRQATKDAGIIAGLNVARIINEPTAAAIAYG-----LDKKGGEK-NILVFDLGGGTFDVSILTIDNGVFEVLSTNGD 189 (599)
Q Consensus 116 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~-----~~~~~~~~-~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~ 189 (599)
.....+.+.++++.||+++..+..+|.|.+-.+. ........ .++++|+|+++|+++++. ++.+.. ...
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~~~---~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRMLF---TRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeEEE---EEE
Confidence 3456788889999999999999999999876653 22222233 499999999999999996 333222 334
Q ss_pred CCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHHHHH
Q 007552 190 THLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEEL 269 (599)
Q Consensus 190 ~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~ 269 (599)
..+||.+|++.|.+. ++.+. ..||+.|..-+.... .-.++
T Consensus 216 i~~G~~~i~~~i~~~--------~~~~~-----------~~Ae~~k~~~~~~~~---------------------~~~~~ 255 (348)
T TIGR01175 216 VPFGTRQLTSELSRA--------YGLNP-----------EEAGEAKQQGGLPLL---------------------YDPEV 255 (348)
T ss_pred eechHHHHHHHHHHH--------cCCCH-----------HHHHHHHhcCCCCCc---------------------hhHHH
Confidence 679999999888643 22322 677887764322110 01245
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCCccCCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 270 NNDLFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 270 ~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
+++.++++...|.+.|+.. ......++.|+|+||++++|.+.+.+++.|
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l 306 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL 306 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH
Confidence 6777777777778877643 223346899999999999999999999999
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.02 E-value=9.5e-10 Score=117.67 Aligned_cols=248 Identities=19% Similarity=0.190 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHH-HHcCCceeecccchHHHHHHhccccCCCccEEE
Q 007552 82 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNIL 160 (599)
Q Consensus 82 e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vl 160 (599)
-+....+++++....- .....-..++++.|..++..+|+.+.+.+ +..|++.+.++++|.+|+++++.. +-+
T Consensus 73 ~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~------tgl 145 (393)
T PF00022_consen 73 WDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT------TGL 145 (393)
T ss_dssp HHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS------SEE
T ss_pred cccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc------ccc
Confidence 3445555665554321 11122346999999999999999886654 577899999999999999888754 459
Q ss_pred EEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHH-HH--hhcCCCCc----cCHHHHHHHHHHHHH
Q 007552 161 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL-IK--KKHGKDIS----KDKRAIGKLRREAER 233 (599)
Q Consensus 161 VvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~-~~--~~~~~~~~----~~~~~~~~L~~~~e~ 233 (599)
|||+|.+.|.|+.+. ++.. +........+||.+++..|.+.+..+ +. ..+..... ........-...++.
T Consensus 146 VVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (393)
T PF00022_consen 146 VVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEE 222 (393)
T ss_dssp EEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHH
T ss_pred ccccceeeeeeeeee--eccc-cccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchh
Confidence 999999999998774 4432 21222235799999999998887763 11 00000000 000000011122333
Q ss_pred HHHHc---c------------CCcceEEEEecccCCccceeecCHHHH---HHHHHHHHH------------HHHHHHHH
Q 007552 234 AKRAL---S------------SQHQVRVEIESLFDGIDFSEPLTRARF---EELNNDLFR------------KTMGPVKK 283 (599)
Q Consensus 234 ~K~~L---s------------~~~~~~i~i~~l~~~~~~~~~itr~~f---e~~~~~~~~------------~i~~~i~~ 283 (599)
+|+.+ + ......+.++ ++. .+.+..+.| |-++.|... .+.++|.+
T Consensus 223 ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~ 297 (393)
T PF00022_consen 223 IKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILD 297 (393)
T ss_dssp HHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHH
T ss_pred ccchhhhcccccccccccccccccceecccc---ccc--ccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 33332 1 1222333332 333 445555444 223333221 46677888
Q ss_pred HHHHhCCC--ccCCCeEEEecCCCCcHHHHHHHHhHcCC-------CCCCCCC-CCchhhhchHHHhhhhh
Q 007552 284 AMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGV-NPDEAVAYGAAVQGGIL 344 (599)
Q Consensus 284 ~l~~~~~~--~~~i~~ViLvGG~srip~v~~~l~~~f~~-------~~i~~~~-~p~~aVA~GAa~~a~~l 344 (599)
++..+... ..-.+.|+|+||+|++|.+.++|.+.+.. .++.... +|..++=.||+++|..-
T Consensus 298 si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 298 SISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 87765422 22247899999999999999999887722 1233444 78999999999998643
No 41
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.94 E-value=4.7e-09 Score=109.84 Aligned_cols=179 Identities=21% Similarity=0.283 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHcCCceeecccchHHHHHHhcccc-----CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCC
Q 007552 117 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK-----KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH 191 (599)
Q Consensus 117 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~-----~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~ 191 (599)
...-....++++.||+++..+=-+|.|.+-.|.... ......++++|+|+.+|.++++. ++.+.. .....
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEe
Confidence 455677788899999999888777777655443321 11346799999999999999986 444322 23358
Q ss_pred CccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHH
Q 007552 192 LGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNN 271 (599)
Q Consensus 192 lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~ 271 (599)
+||.++++.|.+.+- .+. .++|..|..-+... +...+.+.
T Consensus 210 ~G~~~l~~~i~~~~~--------i~~-----------~~Ae~~k~~~~l~~---------------------~~~~~~l~ 249 (340)
T PF11104_consen 210 IGGNDLTEAIARELG--------IDF-----------EEAEELKRSGGLPE---------------------EYDQDALR 249 (340)
T ss_dssp -SHHHHHHHHHHHTT----------H-----------HHHHHHHHHT---------------------------HHHHHH
T ss_pred eCHHHHHHHHHHhcC--------CCH-----------HHHHHHHhcCCCCc---------------------chHHHHHH
Confidence 999999999986632 211 46666666422111 22356677
Q ss_pred HHHHHHHHHHHHHHHH--hCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCC---------CCC----------CCc
Q 007552 272 DLFRKTMGPVKKAMED--AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN---------KGV----------NPD 330 (599)
Q Consensus 272 ~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~---------~~~----------~p~ 330 (599)
+.++++...|.+.++- .......|+.|+|+||++++|.|.+.|++.+ +.++. ... .|.
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 7777777777777773 2234568999999999999999999999999 44321 111 266
Q ss_pred hhhhchHHHhh
Q 007552 331 EAVAYGAAVQG 341 (599)
Q Consensus 331 ~aVA~GAa~~a 341 (599)
.++|.|.|+..
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 78999999864
No 42
>PTZ00281 actin; Provisional
Probab=98.92 E-value=1.6e-08 Score=107.32 Aligned_cols=215 Identities=17% Similarity=0.187 Sum_probs=137.2
Q ss_pred ccEEEEeCCCCCHHHHHHHHHH-HHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEE
Q 007552 105 KDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEV 183 (599)
Q Consensus 105 ~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v 183 (599)
..++||-|..++..+|+.|.+. .+..+++-+.+.+.|.+++++++. .+-+|||+|.+.|.++-+.- |. .+
T Consensus 102 ~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~PV~d--G~-~~ 172 (376)
T PTZ00281 102 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVMDSGDGVSHTVPIYE--GY-AL 172 (376)
T ss_pred CeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------ceEEEEECCCceEEEEEEEe--cc-cc
Confidence 4688999999999999999764 566788889999999999987753 36699999999999886642 21 12
Q ss_pred EEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCc----------------ceEEE
Q 007552 184 LSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------------QVRVE 247 (599)
Q Consensus 184 ~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~i~ 247 (599)
........+||.++++.|.+.+..+ +..... ... ...++.+|+.+..-. ...+.
T Consensus 173 ~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~~~----~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~ 242 (376)
T PTZ00281 173 PHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-TAE----REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE 242 (376)
T ss_pred hhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-HHH----HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE
Confidence 2222335799999999998876432 111111 000 123455555543110 11122
Q ss_pred EecccCCccceeecCHHHH---HHHHHHHH-----HHHHHHHHHHHHHhCC--CccCCCeEEEecCCCCcHHHHHHHHhH
Q 007552 248 IESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDY 317 (599)
Q Consensus 248 i~~l~~~~~~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~srip~v~~~l~~~ 317 (599)
+.++. .+.+..+.| |-++.|.+ ..+.++|.+++..+.. ...-.+.|+|+||+|.+|.+.++|++.
T Consensus 243 ---LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~E 317 (376)
T PTZ00281 243 ---LPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKE 317 (376)
T ss_pred ---CCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHH
Confidence 22232 345555444 34455432 2455666677665432 122346799999999999999999877
Q ss_pred cC----C---CCCCCCCCCchhhhchHHHhhhh
Q 007552 318 FD----G---KEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 318 f~----~---~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
+. . .++..+.++..++=+||+++|+.
T Consensus 318 l~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 318 LTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 62 1 12344456778888999998863
No 43
>PTZ00004 actin-2; Provisional
Probab=98.87 E-value=4.3e-08 Score=104.11 Aligned_cols=233 Identities=15% Similarity=0.115 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CcccEEEEeCCCCCHHHHHHHHHH-HHHcCCceeecccchHHHHHHhccccCCCccEE
Q 007552 83 EISAMILTKMKETAEAFLGK--KIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNI 159 (599)
Q Consensus 83 ~v~a~~L~~l~~~a~~~~~~--~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~v 159 (599)
+....+++++.. ..++. .-..+++|-|..++..+|+.+.+. .+..|++.+.+.++|.+++++++. .+-
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~tg 151 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TTG 151 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ceE
Confidence 344556665432 22322 234688999999999999887655 466799999999999999988753 366
Q ss_pred EEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHcc
Q 007552 160 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALS 239 (599)
Q Consensus 160 lVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 239 (599)
+|||+|.+.|+++.+. +|.. +.......++||.++++.|.+.+..+ .+....... ...++..|+.+.
T Consensus 152 lVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~~~-------~~~~~~iKe~~c 218 (378)
T PTZ00004 152 IVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDVAGRDLTEYMMKILHER---GTTFTTTAE-------KEIVRDIKEKLC 218 (378)
T ss_pred EEEECCCCcEEEEEEE--CCEE-eecceeeecccHHHHHHHHHHHHHhc---CCCCCcHHH-------HHHHHHHhhcce
Confidence 9999999999998775 3332 22223335799999999999886432 111111111 122444444432
Q ss_pred CC---------------c--ceEEEEecccCCccceeecCHHHH---HHHHHHH------HHHHHHHHHHHHHHhCC--C
Q 007552 240 SQ---------------H--QVRVEIESLFDGIDFSEPLTRARF---EELNNDL------FRKTMGPVKKAMEDAGL--E 291 (599)
Q Consensus 240 ~~---------------~--~~~i~i~~l~~~~~~~~~itr~~f---e~~~~~~------~~~i~~~i~~~l~~~~~--~ 291 (599)
.- . ...+.+ .+|. .+.+..+.| |-++.|. ...+.++|.+++..+.. .
T Consensus 219 ~v~~d~~~~~~~~~~~~~~~~~~y~l---Pdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r 293 (378)
T PTZ00004 219 YIALDFDEEMGNSAGSSDKYEESYEL---PDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIR 293 (378)
T ss_pred eecCCHHHHHhhhhcCccccceEEEC---CCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHH
Confidence 11 0 112222 2333 344555544 3355553 23456777777776532 2
Q ss_pred ccCCCeEEEecCCCCcHHHHHHHHhHcC----C---CCCCCCCCCchhhhchHHHhhh
Q 007552 292 KNQIDEIVLVGGSTRIPKVQQLLKDYFD----G---KEPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 292 ~~~i~~ViLvGG~srip~v~~~l~~~f~----~---~~i~~~~~p~~aVA~GAa~~a~ 342 (599)
..-...|+|+||+|.+|.+.++|++.+. . .++....++..++=.||+++|.
T Consensus 294 ~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 294 KDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 2335679999999999999999988772 1 1233445677888888888875
No 44
>PTZ00452 actin; Provisional
Probab=98.82 E-value=5e-08 Score=103.26 Aligned_cols=214 Identities=16% Similarity=0.153 Sum_probs=136.0
Q ss_pred ccEEEEeCCCCCHHHHHHHHHHH-HHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEE
Q 007552 105 KDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEV 183 (599)
Q Consensus 105 ~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v 183 (599)
..+++|-|..++..+|+.|.+.+ +.-+.+.+.+.+.|.+++++++. .+-+|||+|.+.|.++-+. +|.. +
T Consensus 101 ~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------~tglVVDiG~~~t~v~PV~--dG~~-l 171 (375)
T PTZ00452 101 QPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------TIGLVVDSGEGVTHCVPVF--EGHQ-I 171 (375)
T ss_pred CceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC------ceeeeecCCCCcceEEEEE--CCEE-e
Confidence 47899999999999999986654 55688888999999999988763 3569999999999998765 3322 2
Q ss_pred EEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCc----------------ceEEE
Q 007552 184 LSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------------QVRVE 247 (599)
Q Consensus 184 ~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~i~ 247 (599)
........+||.++++.|.+.+.++ +....... . ...++.+|+.++.-. ...+.
T Consensus 172 ~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~ 241 (375)
T PTZ00452 172 PQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK 241 (375)
T ss_pred ccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE
Confidence 2222235799999999988876431 11121110 0 112344444433110 11222
Q ss_pred EecccCCccceeecCHHHH---HHHHHHHH-----HHHHHHHHHHHHHhC--CCccCCCeEEEecCCCCcHHHHHHHHhH
Q 007552 248 IESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKVQQLLKDY 317 (599)
Q Consensus 248 i~~l~~~~~~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~--~~~~~i~~ViLvGG~srip~v~~~l~~~ 317 (599)
+ .+|. .+.+..+.| |-+++|.+ ..+.++|.+++..+. +...-.+.|+|+||+|.+|.+.++|++.
T Consensus 242 L---PDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~E 316 (375)
T PTZ00452 242 L---PDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNE 316 (375)
T ss_pred C---CCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHH
Confidence 2 2332 345566555 23444532 245666777776643 2233457899999999999999999887
Q ss_pred c----CC-C--CCCCCCCCchhhhchHHHhhh
Q 007552 318 F----DG-K--EPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 318 f----~~-~--~i~~~~~p~~aVA~GAa~~a~ 342 (599)
+ +. . ++..+.++..++=.|++++|.
T Consensus 317 l~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 317 LTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 6 21 1 233344566778889988885
No 45
>PTZ00466 actin-like protein; Provisional
Probab=98.81 E-value=9.9e-08 Score=101.15 Aligned_cols=232 Identities=14% Similarity=0.093 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CcccEEEEeCCCCCHHHHHHHHHH-HHHcCCceeecccchHHHHHHhccccCCCccEE
Q 007552 83 EISAMILTKMKETAEAFLGK--KIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNI 159 (599)
Q Consensus 83 ~v~a~~L~~l~~~a~~~~~~--~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~v 159 (599)
+....+++++.+ .++. .-..+++|-|+.++..+|+.|.+. .+..+++.+.+.+.|.+|+++++. .+-
T Consensus 87 d~~e~iw~~~f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~tg 156 (380)
T PTZ00466 87 NDMENIWIHVYN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------TNG 156 (380)
T ss_pred HHHHHHHHHHHh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------ceE
Confidence 344555555542 2332 234688999999999999998555 566788889999999999988763 366
Q ss_pred EEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHcc
Q 007552 160 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALS 239 (599)
Q Consensus 160 lVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 239 (599)
+|||+|.+.|.++-+. +|.. +........+||.++++.|.+.+.+. +..... . .-+..++.+|+.+.
T Consensus 157 lVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c 223 (380)
T PTZ00466 157 TVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKENCC 223 (380)
T ss_pred EEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHhCe
Confidence 9999999999997665 3322 22222335899999999998876431 111110 0 11123445555432
Q ss_pred CC-------------c--ceEEEEecccCCccceeecCHHHH---HHHHHHHH-----HHHHHHHHHHHHHhCC--CccC
Q 007552 240 SQ-------------H--QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGL--EKNQ 294 (599)
Q Consensus 240 ~~-------------~--~~~i~i~~l~~~~~~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~ 294 (599)
.- . ...+.+ .+|. .+.+..+.| |-++.|-+ ..+.++|.+++.++.. ...-
T Consensus 224 ~v~~d~~~e~~~~~~~~~~~~y~L---Pdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L 298 (380)
T PTZ00466 224 YVSFNMNKEKNSSEKALTTLPYIL---PDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTL 298 (380)
T ss_pred EecCChHHHHhhccccccceeEEC---CCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHH
Confidence 10 0 011222 2332 345565555 33444432 2455666677666432 2334
Q ss_pred CCeEEEecCCCCcHHHHHHHHhHcCC-------CCCCCCCCCchhhhchHHHhhh
Q 007552 295 IDEIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 295 i~~ViLvGG~srip~v~~~l~~~f~~-------~~i~~~~~p~~aVA~GAa~~a~ 342 (599)
...|+|+||+|.+|.+.++|++.+.. .++....++..++=+||+++|+
T Consensus 299 ~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 299 YSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred hhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 57899999999999999999887721 1233445667788889988885
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.67 E-value=5.7e-08 Score=100.52 Aligned_cols=220 Identities=18% Similarity=0.275 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhCCCc--ccEEEEeC-CCC-CHHHH---HHHHH-HHHH------cC-----CceeecccchHHHHHH
Q 007552 87 MILTKMKETAEAFLGKKI--KDAVVTVP-AYF-NDAQR---QATKD-AGII------AG-----LNVARIINEPTAAAIA 147 (599)
Q Consensus 87 ~~L~~l~~~a~~~~~~~~--~~~VitVP-a~~-~~~qr---~~l~~-Aa~~------AG-----l~~~~li~Ep~Aaal~ 147 (599)
.+-..+..||-...|... ..+|++.| ..| +...+ ..+.. -... -| +..+.+++||.||.+.
T Consensus 76 ~~n~~av~haL~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~ 155 (318)
T PF06406_consen 76 DLNLVAVHHALLKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFD 155 (318)
T ss_dssp HHHHHHHHHHHHHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHH
Confidence 343445555555555433 36889999 434 32211 22211 1111 11 2457789999999998
Q ss_pred hccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHH
Q 007552 148 YGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKL 227 (599)
Q Consensus 148 y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 227 (599)
+..... +...++|+|+||+|+|++++. ++.-.+....+...+|-..+-..+.+.+.. .+... +......+
T Consensus 156 ~~~~~~-~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~-----~~~~~--s~~~~~~i 225 (318)
T PF06406_consen 156 ALMDLD-EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRS-----AGIDT--SELQIDDI 225 (318)
T ss_dssp HHHTS--TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT-------SBHH--HHHHHHHH
T ss_pred HHHhhc-ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHH-----hcCCC--cHHHHHHH
Confidence 765533 346799999999999999886 222122233444678888777777665443 11111 11111111
Q ss_pred HHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCc
Q 007552 228 RREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI 307 (599)
Q Consensus 228 ~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri 307 (599)
..... -+..++ ...... =..+++.+.++..++++.+.|.+.+. ...+++.|+|+||++.
T Consensus 226 i~~~~-~~~~~~----------~~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~----~~~~~~~I~~vGGGA~- 284 (318)
T PF06406_consen 226 IRNRK-DKGYLR----------QVINDE-----DVIDDVSEVIEEAVEELINRILRELG----DFSDIDRIFFVGGGAI- 284 (318)
T ss_dssp HHTTT--HHHHH----------HHSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHT----TS-S-SEEEEESTTHH-
T ss_pred HHhhh-ccceec----------ccccch-----hhHHHHHHHHHHHHHHHHHHHHHHHh----hhccCCeEEEECCcHH-
Confidence 11000 000000 000000 01234444555555555554544443 2356889999999976
Q ss_pred HHHHHHHHhHcC--CCCCCCCCCCchhhhchHH
Q 007552 308 PKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAA 338 (599)
Q Consensus 308 p~v~~~l~~~f~--~~~i~~~~~p~~aVA~GAa 338 (599)
.+.+.|++.|+ ...+...-||+.|.|+|-+
T Consensus 285 -ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 285 -LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred -HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 58999999984 3467778899999999965
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.56 E-value=1.8e-06 Score=86.15 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=105.4
Q ss_pred ecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCC
Q 007552 136 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 215 (599)
Q Consensus 136 ~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~ 215 (599)
..++|.+|-+.....-.. ..-.|+|+||..+.+..++ ++.+.-.........|+-.|.+.+++.+ ++
T Consensus 73 ~~~~ei~~~~~g~~~~~~---~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l--------~~ 139 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP---EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL--------GV 139 (248)
T ss_pred CceEEhhHHHHHHHHHCC---CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc--------CC
Confidence 367888886654332222 2225999999999988887 5554444455556778888887776552 33
Q ss_pred CCccCHHHHHHHHHHHHHHHHHccC----CcceEEEEe-cccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007552 216 DISKDKRAIGKLRREAERAKRALSS----QHQVRVEIE-SLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGL 290 (599)
Q Consensus 216 ~~~~~~~~~~~L~~~~e~~K~~Ls~----~~~~~i~i~-~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~ 290 (599)
++ ++++.++..-.. +....+..+ .+.. .+.-..++ ++++..+.+.+...+.+.+....
T Consensus 140 ~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~--~l~~g~~~---~di~~~~~~~va~~i~~~~~~~~- 202 (248)
T TIGR00241 140 SV-----------EELGSLAEKADRKAKISSMCTVFAESELIS--LLAAGVKK---EDILAGVYESIAERVAEMLQRLK- 202 (248)
T ss_pred CH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHH--HHHCCCCH---HHHHHHHHHHHHHHHHHHHhhcC-
Confidence 32 233333322111 111111111 0000 00111233 45666666766666666665432
Q ss_pred CccCCC-eEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHh
Q 007552 291 EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 340 (599)
Q Consensus 291 ~~~~i~-~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 340 (599)
++ .|+|+||.+++|++.+.+.+.+ +.++..+.+|..+.|+|||++
T Consensus 203 ----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 ----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred ----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 44 7999999999999999999999 788888889999999999973
No 48
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.54 E-value=1.8e-06 Score=87.21 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHH-HHcCCceeecccchHHHHHHhccccCCCccEEEE
Q 007552 83 EISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 161 (599)
Q Consensus 83 ~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlV 161 (599)
++..+++++..+.-- +....---++||-|++-+.+.|+.+.+.+ +...++...|..+|+++|++.| ..+.||
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G------rstalV 158 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG------RSTALV 158 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC------CCceEE
Confidence 455566666553211 12222346899999999999998886654 5667788889999999999876 346799
Q ss_pred EEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHH
Q 007552 162 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 208 (599)
Q Consensus 162 vD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~ 208 (599)
+|+|++++.++-+. +|.+--.+... ..+||+.++..+.+.|..+
T Consensus 159 vDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 159 VDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 99999999998764 44433333333 6899999999999988765
No 49
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.50 E-value=1.1e-05 Score=91.63 Aligned_cols=280 Identities=18% Similarity=0.276 Sum_probs=164.8
Q ss_pred EecCCceEEEE-EEe---CCceeEechHHHHHHHHHHHHHHHHHHhCCC--------------cccEEEEeCCCCCHHHH
Q 007552 59 VNRDGKPYIQV-QIR---DGETKVFSPEEISAMILTKMKETAEAFLGKK--------------IKDAVVTVPAYFNDAQR 120 (599)
Q Consensus 59 v~~~g~~~~~v-~~~---~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~--------------~~~~VitVPa~~~~~qr 120 (599)
++.+|.+-+.+ ... -.-.-.||-.-+..++|..|..+|..+.+.+ ...+++|||+.....+|
T Consensus 393 iN~~G~~L~~l~~~~~r~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er 472 (1002)
T PF07520_consen 393 INDDGQPLYQLDPEDERLPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPER 472 (1002)
T ss_pred hcccCcchhhhcCccccCccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHH
Confidence 34667665554 110 0012357777888888888888887766532 45899999999999999
Q ss_pred HHHHHHHHHc--------CCce--------------------ee-cccchHHHHHHhccc------------------cC
Q 007552 121 QATKDAGIIA--------GLNV--------------------AR-IINEPTAAAIAYGLD------------------KK 153 (599)
Q Consensus 121 ~~l~~Aa~~A--------Gl~~--------------------~~-li~Ep~Aaal~y~~~------------------~~ 153 (599)
+.++++++.| |... +. =-+|.+|.=+-|... +.
T Consensus 473 ~ifr~r~~~Ai~LvWk~lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp 552 (1002)
T PF07520_consen 473 EIFRRRMEEAIGLVWKALGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARP 552 (1002)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCC
Confidence 9999998876 4320 00 124555543333111 11
Q ss_pred C----------CccEEEEEEcCCCEEEEEEEEEe----CC-eEEEE----EecCCCCCccchHhHHHHHH-HHHHHHhh-
Q 007552 154 G----------GEKNILVFDLGGGTFDVSILTID----NG-VFEVL----STNGDTHLGGEDFDQRVMEY-FIKLIKKK- 212 (599)
Q Consensus 154 ~----------~~~~vlVvD~Gggt~dvsv~~~~----~~-~~~v~----~~~~~~~lGG~~iD~~l~~~-~~~~~~~~- 212 (599)
. +.-.|.-+|+||||||..|-.+. .+ ...+. -..| -.+.|+||=..+++. ++..+++.
T Consensus 553 ~~~~~~~~~~~~slriASIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL 631 (1002)
T PF07520_consen 553 DRQPAPGEDPGPSLRIASIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQAL 631 (1002)
T ss_pred CccccccCCCCCceEEEEEecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHH
Confidence 1 23368899999999999998876 22 22221 1233 467888887666544 44433322
Q ss_pred ---------------cCCCCccCH-H-------------HHHHHHHHHHHHHHHccCCcceEEEEeccc-----------
Q 007552 213 ---------------HGKDISKDK-R-------------AIGKLRREAERAKRALSSQHQVRVEIESLF----------- 252 (599)
Q Consensus 213 ---------------~~~~~~~~~-~-------------~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~----------- 252 (599)
+|.+-.... + ...+++.++|..-.. .........+..+.
T Consensus 632 ~~aG~~~~~~ll~~LfG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~ 710 (1002)
T PF07520_consen 632 KKAGVADPRALLSRLFGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLD 710 (1002)
T ss_pred HHhcccCHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHH
Confidence 222200000 0 012234444442210 00000111111110
Q ss_pred ----------------CCccceeecCHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHH
Q 007552 253 ----------------DGIDFSEPLTRARFEELNN---DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQL 313 (599)
Q Consensus 253 ----------------~~~~~~~~itr~~fe~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~ 313 (599)
+=.++.+.|+...+...+. -.+...+..+-+++.. -+.|.++|+|--||+|.||..
T Consensus 711 yi~~~~~~~~~~~~~Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqal 785 (1002)
T PF07520_consen 711 YINEEVRRLPAGAPDFDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQAL 785 (1002)
T ss_pred HHHHHHhhcCCCCCCcceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHH
Confidence 1145567888888888775 5666666666666665 356789999999999999999
Q ss_pred HHhHcCCC-------------------CCCCCCCCchhhhchHHHhhhhhc
Q 007552 314 LKDYFDGK-------------------EPNKGVNPDEAVAYGAAVQGGILS 345 (599)
Q Consensus 314 l~~~f~~~-------------------~i~~~~~p~~aVA~GAa~~a~~ls 345 (599)
+++..+-. +..+--||-..||.||.+.+....
T Consensus 786 fr~~~pvPp~RIv~l~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 786 FRHLLPVPPDRIVPLHGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred HHHhCCCCcccEEecCCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 99988411 012345899999999998775443
No 50
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.34 E-value=1.3e-05 Score=79.96 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcCCceeecccchHHHHHHhccccC-----CCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCcc
Q 007552 120 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-----GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG 194 (599)
Q Consensus 120 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~-----~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG 194 (599)
-....+|++.|||+...+=-|..|.--+|..-.. .....++|+|+|+..+.+.++.-+...| ..+..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCcH
Confidence 4455788999999998887888887666652111 1223478999999999999987444443 34578999
Q ss_pred chHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHH
Q 007552 195 EDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLF 274 (599)
Q Consensus 195 ~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~ 274 (599)
+.+++.+.+. |+.+. ..++.+|....... +--.++..+++
T Consensus 226 ~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHHHH
Confidence 9999887544 34433 45666666543322 11245677778
Q ss_pred HHHHHHHHHHHHHh--CCCccCCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 275 RKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 275 ~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
+.+.+.|.+.|+-. .-...+|+.|+|.||++.+-.+.+++.+.+
T Consensus 266 ~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 88888888887742 234567999999999999999999999998
No 51
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.07 E-value=3.5e-05 Score=82.63 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=72.5
Q ss_pred ccEEEEeCCCCCHHHHHHHHHH-HHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEE
Q 007552 105 KDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEV 183 (599)
Q Consensus 105 ~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v 183 (599)
..+++|-|..+....|+.+.+. .+.-.++.+.+..++.+++.+.+... .+.+|+|+|.+.|+|+-+--+- .+
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g~ViD~G~~~t~v~PV~DG~---~l 179 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD----ETGLVIDSGDSVTHVIPVVDGI---VL 179 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC----CceEEEEcCCCceeeEeeeccc---cc
Confidence 4799999999999999888554 56667777788888888887665432 3779999999999998775221 12
Q ss_pred EEecCCCCCccchHhHHHHHHHHHH
Q 007552 184 LSTNGDTHLGGEDFDQRVMEYFIKL 208 (599)
Q Consensus 184 ~~~~~~~~lGG~~iD~~l~~~~~~~ 208 (599)
.....-..+||++++..|.+.+...
T Consensus 180 ~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 180 PKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred cccceeeecCcHHHHHHHHHHHhhc
Confidence 2223336799999999998887763
No 52
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.93 E-value=7.6e-05 Score=72.80 Aligned_cols=190 Identities=21% Similarity=0.209 Sum_probs=101.6
Q ss_pred HHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHH
Q 007552 128 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 207 (599)
Q Consensus 128 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~ 207 (599)
+..|.++..-=.|+.+|++....... .+..+.|+|+|||+||.+++.-.+... -+.-. -.|+-++..+.
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~v~-~iHlA----GAG~mVTmlI~----- 174 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGEVT-AIHLA----GAGNMVTMLIN----- 174 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS-EE-EEEEE-----SHHHHHHHHH-----
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCcEE-EEEec----CCchhhHHHHH-----
Confidence 45688887778899999987654443 356789999999999999997544432 21111 13444444332
Q ss_pred HHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC-----------cceEEEEecc-----------cCC--ccceeecCH
Q 007552 208 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----------HQVRVEIESL-----------FDG--IDFSEPLTR 263 (599)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~i~~l-----------~~~--~~~~~~itr 263 (599)
...|++. +.-+|.+|+.--.. -...+.-+.+ .++ ..+...++-
T Consensus 175 ---sELGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~l 241 (332)
T PF08841_consen 175 ---SELGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSL 241 (332)
T ss_dssp ---HHCT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-H
T ss_pred ---HhhCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccH
Confidence 2334322 14677777741100 0011100000 011 112223344
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHh--CCCccCCCeEEEecCCCCcHHHHHHHHhHcCCC-------CCCCCCCCchhh
Q 007552 264 ARFEELNNDLFRKTM-GPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK-------EPNKGVNPDEAV 333 (599)
Q Consensus 264 ~~fe~~~~~~~~~i~-~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~-------~i~~~~~p~~aV 333 (599)
+++..+-+..-++++ .-..++|++. .-+..+|+.|+||||++.=.=|-+++.+.+..- ++.-..-|..||
T Consensus 242 Ekir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAV 321 (332)
T PF08841_consen 242 EKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAV 321 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHH
Confidence 444443333333322 3344555542 123457899999999999888888888888432 455567899999
Q ss_pred hchHHHhh
Q 007552 334 AYGAAVQG 341 (599)
Q Consensus 334 A~GAa~~a 341 (599)
|.|.++..
T Consensus 322 ATGLvlsy 329 (332)
T PF08841_consen 322 ATGLVLSY 329 (332)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998754
No 53
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.63 E-value=0.00048 Score=72.29 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=87.9
Q ss_pred eEechHHHHHHHHHHHHHHHHHHhCCCcc-----cEEEEeCCCCCHHHHHHH-HHHHHHcCCceeecccchHHHHHHhcc
Q 007552 77 KVFSPEEISAMILTKMKETAEAFLGKKIK-----DAVVTVPAYFNDAQRQAT-KDAGIIAGLNVARIINEPTAAAIAYGL 150 (599)
Q Consensus 77 ~~~s~e~v~a~~L~~l~~~a~~~~~~~~~-----~~VitVPa~~~~~qr~~l-~~Aa~~AGl~~~~li~Ep~Aaal~y~~ 150 (599)
..+|..++++.+-+-+.-.....+..+++ ++|+-||-.|...+.+.+ .-.....||....++.|+.||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 34677888777654443333455555544 699999999998886555 445667899999999999999987776
Q ss_pred ccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHH
Q 007552 151 DKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 207 (599)
Q Consensus 151 ~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~ 207 (599)
. ...|||+|+-+|.|+.++ +|. .+..+.-....||.||++.++-++.+
T Consensus 275 s------s~CVVdiGAQkTsIaCVE--dGv-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S------SACVVDIGAQKTSIACVE--DGV-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c------ceeEEEccCcceeEEEee--cCc-cccCceEEeccCCchHHHHHHHHHHh
Confidence 5 458999999999999887 332 11112222568999999999877653
No 54
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.59 E-value=0.0077 Score=65.26 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=54.0
Q ss_pred cceeecCHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCC-----------
Q 007552 256 DFSEPLTRARFEELNNDL---FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK----------- 321 (599)
Q Consensus 256 ~~~~~itr~~fe~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~----------- 321 (599)
++.+.|.-.++++.+-.. +......+-+++. .-+.|.++|+|--||+|.||..++...+-.
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn-----~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAIN-----HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHh-----hhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 334556555665544332 2333333333333 245678999999999999999999877310
Q ss_pred --------CCCCCCCCchhhhchHHHhhhhhc
Q 007552 322 --------EPNKGVNPDEAVAYGAAVQGGILS 345 (599)
Q Consensus 322 --------~i~~~~~p~~aVA~GAa~~a~~ls 345 (599)
+..+-.||...+|.||.+.+..+.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 112335899999999988876543
No 55
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.59 E-value=0.00025 Score=75.05 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=94.1
Q ss_pred cccEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEE
Q 007552 104 IKDAVVTVPAYFNDAQRQATKDAGII------------AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 171 (599)
Q Consensus 104 ~~~~VitVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dv 171 (599)
..-.+||.++.. ++.+++|++. ||+++..++. |.|++.+... . ++...++++|+|||||++
T Consensus 88 ~~ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e-Eke~gVa~IDIGgGTT~i 160 (475)
T PRK10719 88 SGAVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E-ERNTRVLNIDIGGGTANY 160 (475)
T ss_pred ccEEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-h-hccCceEEEEeCCCceEE
Confidence 345778887654 4555555554 7777777767 9998876653 3 567889999999999999
Q ss_pred EEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCc-cCHHHHHHHHHHHHHHHHHccCCcceEEEEec
Q 007552 172 SILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDIS-KDKRAIGKLRREAERAKRALSSQHQVRVEIES 250 (599)
Q Consensus 172 sv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~ 250 (599)
+++. ++.+ . +.+...+||+.++.. -+ + .+. -++. ..+|.+. +...
T Consensus 161 aVf~--~G~l--~-~T~~l~vGG~~IT~D-~~----------~-~i~yis~~-~~~l~~~-------~~~~--------- 206 (475)
T PRK10719 161 ALFD--AGKV--I-DTACLNVGGRLIETD-SQ----------G-RVTYISPP-GQMILDE-------LGLA--------- 206 (475)
T ss_pred EEEE--CCEE--E-EEEEEecccceEEEC-CC----------C-CEEEEChH-HHHHHHH-------cCCC---------
Confidence 9997 3322 1 233468999988643 10 0 011 1111 1222111 1110
Q ss_pred ccCCccceeecCHHHHHHHHHHHHHHHHHHHHH-------HHHHh-CCC-ccCCCeEEEecCCCCc
Q 007552 251 LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK-------AMEDA-GLE-KNQIDEIVLVGGSTRI 307 (599)
Q Consensus 251 l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~-------~l~~~-~~~-~~~i~~ViLvGG~sri 307 (599)
...--.++.+++..+|+-+.+-+.+.+.. .|-.. .++ ...++.|.+.||-+..
T Consensus 207 ----~~~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 207 ----ITDGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ----ccccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 11112456677777777777666665541 11111 222 4578999999998764
No 56
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.56 E-value=0.0065 Score=61.22 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=41.0
Q ss_pred eEEEecCCCCcHHHHHHHHhHcCCCCCC-CCCCCchhhhchHHHhhhh
Q 007552 297 EIVLVGGSTRIPKVQQLLKDYFDGKEPN-KGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 297 ~ViLvGG~srip~v~~~l~~~f~~~~i~-~~~~p~~aVA~GAa~~a~~ 343 (599)
.|+|+||.++.|.+++.+++.+ +.++. .+.+|..+.|+|||++|..
T Consensus 242 ~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 242 GFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 5999999999999999999999 66666 5678999999999999853
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.39 E-value=0.0012 Score=69.09 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=42.4
Q ss_pred eEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhh
Q 007552 297 EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 297 ~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~ 342 (599)
.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+.|+|||++|+
T Consensus 358 ~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 4999999999999999999999 78888899999999999999984
No 58
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.36 E-value=0.0093 Score=59.24 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCC----CCCCCCCchhhhchHHHhh
Q 007552 267 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE----PNKGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~----i~~~~~p~~aVA~GAa~~a 341 (599)
++++..+...+..-+...+++.+. .-+.|+|.||.++.+.+.+.+++.+++.+ +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~---~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGA---LDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 334444444444444444443321 11359999999999999999999985433 5556688999999999975
No 59
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.33 E-value=0.0023 Score=66.56 Aligned_cols=216 Identities=19% Similarity=0.214 Sum_probs=111.0
Q ss_pred ccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEE
Q 007552 105 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVL 184 (599)
Q Consensus 105 ~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~ 184 (599)
.-+++|-|..|...-|+.|.+..-.. |++-.+.-.--|.. |+..+ .+-+|+|+|.|-|.+.-+- + .+.+.
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~qavl--ya~g~----ttG~VvD~G~gvt~~vPI~--e-G~~lp 169 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAIQAVL--YASGR----TTGLVVDSGDGVTHVVPIY--E-GYALP 169 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHHHHHH--HHcCC----eeEEEEEcCCCceeeeecc--c-ccccc
Confidence 46899999999999999987764322 33333322223323 43332 2459999999977665432 1 22233
Q ss_pred EecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCc------------ceEEEEe-cc
Q 007552 185 STNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------------QVRVEIE-SL 251 (599)
Q Consensus 185 ~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------------~~~i~i~-~l 251 (599)
..-....+||++++.-|...|.+ .+....... -+.-++.+|+.++-.. ...+... .+
T Consensus 170 ~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~l 239 (372)
T KOG0676|consen 170 HAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYEL 239 (372)
T ss_pred hhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhcccccccchhhhcccccccccccccC
Confidence 33445789999999977766655 121111110 0122334444432110 0111110 02
Q ss_pred cCCccceeecCHHHH---HHHHHHHH-----HHHHHHHHHHHHHh--CCCccCCCeEEEecCCCCcHHHHHHHHhHcCC-
Q 007552 252 FDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG- 320 (599)
Q Consensus 252 ~~~~~~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~- 320 (599)
.++.. +.+.-+.| |-+++|.+ ..+-+.+-..+.++ ++.+.-...|+|+||++..|++.+++.+.+..
T Consensus 240 PDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l 317 (372)
T KOG0676|consen 240 PDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQAL 317 (372)
T ss_pred CCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhc
Confidence 22222 44444333 22333322 22233333333332 33344456899999999999999999886621
Q ss_pred ----CC--CCCCCCCchhhhchHHHhhh
Q 007552 321 ----KE--PNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 321 ----~~--i~~~~~p~~aVA~GAa~~a~ 342 (599)
.+ +..+.+...+|=.|+.+.|+
T Consensus 318 ~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 318 APSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred CCCCcceEEecCcccccceecCceeEee
Confidence 11 22222223455566666664
No 60
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.32 E-value=0.0056 Score=62.75 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhh
Q 007552 266 FEELNNDLFRKTMGPVKK-AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 266 fe~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
.|+++..+...+..-+-. +++.-.. .+. |+|+||.+....+.+++++.+ +.++..+.+|...-|.|||++|..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i--~~~--iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDI--EEP--IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC--CCC--EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 466777777766654444 5554332 222 999999999999999999999 799999999999999999999853
No 61
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.23 E-value=0.0072 Score=62.74 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=95.1
Q ss_pred ecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEe-CCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcC
Q 007552 136 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID-NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 214 (599)
Q Consensus 136 ~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~-~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~ 214 (599)
.+++|-+|-|....+-. +..=.|+|+||--+-+ +++. ++.+.-......+.-|.-.|=+.+++. .+
T Consensus 249 ~vitEItcHA~GA~~l~---P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~--------Lg 315 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY---PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADE--------MN 315 (432)
T ss_pred ceeeeHHHHHHHHHHHC---CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHH--------cC
Confidence 35689998776543322 2344899999987765 4444 344332223332333433332233222 23
Q ss_pred CCCccCHHHHHHHHHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccC
Q 007552 215 KDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQ 294 (599)
Q Consensus 215 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~ 294 (599)
+++. .|-..+.+++....-+....+.-++-.- .-+.--.++ ++++..+...+..-+...+.+.. ..
T Consensus 316 i~le-------El~~lA~~a~~pv~ISS~CtVFAESEVI-slla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~---~i 381 (432)
T TIGR02259 316 MGLH-------ELGPLAMKSSKPARINSTCTVFAGAELR-DRLALGDKR---EDILAGLHRAIILRAISIISRSG---GI 381 (432)
T ss_pred CCHH-------HHHHHHhcCCCCCCcCCcceEEehHHHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 3331 1222233333333323333332221000 001112344 33444444444444444444321 11
Q ss_pred CCeEEEecCCCCcHHHHHHHHhHcC----CCCCCCCCCCchhhhchHHHhh
Q 007552 295 IDEIVLVGGSTRIPKVQQLLKDYFD----GKEPNKGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 295 i~~ViLvGG~srip~v~~~l~~~f~----~~~i~~~~~p~~aVA~GAa~~a 341 (599)
-..|+|+||.++.+.+.+.|++.++ +.++..+.+|+.+-|+|||++|
T Consensus 382 ~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 382 TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 2469999999999999999999994 4567788899999999999975
No 62
>PRK13317 pantothenate kinase; Provisional
Probab=97.06 E-value=0.011 Score=59.75 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCCeEEEec-CCCCcHHHHHHHHhHcC--CCCCCCCCCCchhhhchHHHhhh
Q 007552 294 QIDEIVLVG-GSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 294 ~i~~ViLvG-G~srip~v~~~l~~~f~--~~~i~~~~~p~~aVA~GAa~~a~ 342 (599)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 79999999999999873 56777888999999999999874
No 63
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.74 E-value=0.0018 Score=62.08 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhh
Q 007552 267 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
.++++-+++.+.-.++..++... .....++.|+++||.++.|.+.+.+.+.| +.++....+ .++.|.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 44555555555555555544431 11245889999999999999999999999 677766544 89999999999864
No 64
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.69 E-value=0.0091 Score=57.72 Aligned_cols=223 Identities=19% Similarity=0.205 Sum_probs=131.1
Q ss_pred cccEEEEeCCCCCHHHHHHHHHH-HHHcCCceeecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEE
Q 007552 104 IKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFE 182 (599)
Q Consensus 104 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~ 182 (599)
-.++.+|-|+.-....|+.|-+. .+..||.-+.+--...-+ -|+.... .=+|+|-|-|-|.+.-+.-. -.+.
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLt--LYAQGL~----tGvVvDSGDGVTHi~PVye~-~~l~ 173 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLT--LYAQGLL----TGVVVDSGDGVTHIVPVYEG-FVLP 173 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHH--HHHhccc----ceEEEecCCCeeEEeeeecc-eehh
Confidence 34789999999998999988665 567788876654433333 3433222 33899999999998765311 1111
Q ss_pred EEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCC-----------cceEEEEec-
Q 007552 183 VLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----------HQVRVEIES- 250 (599)
Q Consensus 183 v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~i~~- 250 (599)
. -.+-..+.|++++.-|.+.+..+ -|...-+.+- +.....|+.|.-- -++++-+++
T Consensus 174 H--LtrRldvAGRdiTryLi~LLl~r---GYafN~tADF-------ETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 174 H--LTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADF-------ETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred h--hhhhccccchhHHHHHHHHHHhh---ccccccccch-------HHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 1 12335689999999999887654 2221111111 3334444444321 112222222
Q ss_pred -ccCCccceeecCHHHHH---HHHHHHH-----HHHHHHHHHHHHHhCCC--ccCCCeEEEecCCCCcHHHHHHHHhHcC
Q 007552 251 -LFDGIDFSEPLTRARFE---ELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD 319 (599)
Q Consensus 251 -l~~~~~~~~~itr~~fe---~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~~~l~~~f~ 319 (599)
+.+|. .+++-.+.|| .+++|.+ ..+.+++-.+++.+.++ ..--.+|+|.||++.-|.+..+|++.+.
T Consensus 242 tLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElk 319 (389)
T KOG0677|consen 242 TLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELK 319 (389)
T ss_pred ecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHH
Confidence 22332 3455555554 4566543 23455666666665543 2234689999999999999888876441
Q ss_pred ---------C---------CCCCCCCCCchhhhchHHHhhhhhcCC
Q 007552 320 ---------G---------KEPNKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 320 ---------~---------~~i~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
+ .++..+..-.+-|-.|.|.+|.++...
T Consensus 320 qlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~ 365 (389)
T KOG0677|consen 320 QLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDK 365 (389)
T ss_pred HHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCC
Confidence 1 123333344578889999999877643
No 65
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.23 E-value=0.056 Score=58.18 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=103.7
Q ss_pred EEEEEcCCCEEEEEEEEEe-------CCeEEEEEecCCCCCccchHhHHHHHHHHHHH---------HhhcCCCCccCHH
Q 007552 159 ILVFDLGGGTFDVSILTID-------NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLI---------KKKHGKDISKDKR 222 (599)
Q Consensus 159 vlVvD~Gggt~dvsv~~~~-------~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~---------~~~~~~~~~~~~~ 222 (599)
-|++=+|-+|+++.+-.-. +.....+-.+.-..=||+.-.-.|++|+.+.. ..+++.++ ...
T Consensus 270 ~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~ 347 (544)
T COG1069 270 SLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YES 347 (544)
T ss_pred eEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHH
Confidence 3555567777777665422 11222222233334578888888888887652 11111111 112
Q ss_pred HHHHHHHHHHHHHHHccCCcceEEEEecccCC-------------ccceeecCHHHHHHHHHHHHHHHHH---HHHHHHH
Q 007552 223 AIGKLRREAERAKRALSSQHQVRVEIESLFDG-------------IDFSEPLTRARFEELNNDLFRKTMG---PVKKAME 286 (599)
Q Consensus 223 ~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~-------------~~~~~~itr~~fe~~~~~~~~~i~~---~i~~~l~ 286 (599)
...++..-+++++...+....- +.++.+..+ ..+++.-+.+.+-.+..-.+.-+.- .|-++++
T Consensus 348 ~~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~ 426 (544)
T COG1069 348 LAQRLELLTEAAAAIPPLASGL-HVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFE 426 (544)
T ss_pred HHHHHHHHHhhHhccCcccCCc-EecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344555556666665433221 112211111 1223333444444555555555543 3444555
Q ss_pred HhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCC
Q 007552 287 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 287 ~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
+.+ -.|+.|+..||..+.|.+.+.+.+.. |.++..+ ..++++++|+|+.|+.-.+.
T Consensus 427 ~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 427 DQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred HcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhcc
Confidence 544 56899999999999999999999999 6666655 66899999999999865543
No 66
>PLN02669 xylulokinase
Probab=96.09 E-value=0.017 Score=64.63 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhh
Q 007552 269 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 269 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
+++-+++.+.-.++..++..+.. ..++.|+++||+|++|.+.+.+.+.| +.++.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45555666655555555554432 45789999999999999999999999 6777665444 7889999999975
No 67
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=96.05 E-value=0.014 Score=59.61 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHh
Q 007552 269 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 340 (599)
Q Consensus 269 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 340 (599)
+++-..+.+.+.|++.....+..+.+. .++.+||.+ |++...+.+.++-..+..+..|.-+.|.||++-
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 344444555556666654445544332 255566665 678888888884445666666789999999863
No 68
>PRK15027 xylulokinase; Provisional
Probab=96.03 E-value=0.015 Score=64.11 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=45.7
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCC
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
.++.|+++||+++++...+++.+.+ +.++....+.+++.|+|||+.|+.-.+.
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G~ 438 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcCC
Confidence 4788999999999999999999999 7888665567778999999999865544
No 69
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.83 E-value=0.022 Score=63.57 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=65.1
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHH
Q 007552 260 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 260 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 339 (599)
.-+|..+..+++-+++.+.-.++.+++...-....++.|.++||++++|...+.+.+.+ +.++....+ .++.|+|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHH
Confidence 44566777788888888776666666543211235788999999999999999999999 788876644 5688999999
Q ss_pred hhhhhcCC
Q 007552 340 QGGILSGE 347 (599)
Q Consensus 340 ~a~~ls~~ 347 (599)
+|+.-.+.
T Consensus 487 lA~~~~G~ 494 (541)
T TIGR01315 487 LGAKAAGT 494 (541)
T ss_pred HHHHhcCc
Confidence 99865543
No 70
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.32 E-value=0.042 Score=60.75 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcC
Q 007552 268 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 346 (599)
Q Consensus 268 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~ 346 (599)
.+++-+++.+.-.++..++... .....++.|.++||++++|...+.+.+.| +.++... ...++.|+|||+.|+.-.+
T Consensus 376 ~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 376 HIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhcC
Confidence 3444555555444444444321 11234788999999999999999999999 7888654 4557889999999986554
Q ss_pred C
Q 007552 347 E 347 (599)
Q Consensus 347 ~ 347 (599)
.
T Consensus 454 ~ 454 (498)
T PRK00047 454 F 454 (498)
T ss_pred c
Confidence 3
No 71
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.31 E-value=0.046 Score=60.15 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhc
Q 007552 267 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 345 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls 345 (599)
..+++-+++.+.-.++..++... .....++.|.++||+++++.+.+.+.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhc
Confidence 33444445555444444443321 11235789999999999999999999999 7777665 466789999999998765
Q ss_pred CC
Q 007552 346 GE 347 (599)
Q Consensus 346 ~~ 347 (599)
+.
T Consensus 440 g~ 441 (481)
T TIGR01312 440 GE 441 (481)
T ss_pred CC
Confidence 53
No 72
>PRK04123 ribulokinase; Provisional
Probab=95.19 E-value=0.045 Score=61.29 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCC-CCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcC
Q 007552 268 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 346 (599)
Q Consensus 268 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~ 346 (599)
.+++-+++.+.-.++.+++...-....++.|.++||+ ++++.+.+.+.+.| +.++... .+.++.|+|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 3455555555544444443321112357889999999 99999999999999 7777554 4567889999999986544
No 73
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.17 E-value=0.043 Score=60.59 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcC
Q 007552 268 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 346 (599)
Q Consensus 268 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~ 346 (599)
.+++-+++.+.-.++..++... .....++.|.++||+++++...+++.+.| +.++... +..++.|+|||+.|+.-.+
T Consensus 372 ~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 372 HIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhcC
Confidence 3344444444444444444321 11234789999999999999999999999 7888654 4567889999999986554
Q ss_pred C
Q 007552 347 E 347 (599)
Q Consensus 347 ~ 347 (599)
.
T Consensus 450 ~ 450 (493)
T TIGR01311 450 Y 450 (493)
T ss_pred c
Confidence 3
No 74
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.16 E-value=0.043 Score=60.08 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcC
Q 007552 268 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 346 (599)
Q Consensus 268 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~ 346 (599)
.+++-+++.+.-.++..++... .....++.|.++||++++|...+.+.+.| +.++....+ .++.++|||+.|+.-.+
T Consensus 366 ~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 366 HIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHHhcC
Confidence 3455555555444444333321 11224788999999999999999999999 788866554 47889999999986554
Q ss_pred C
Q 007552 347 E 347 (599)
Q Consensus 347 ~ 347 (599)
.
T Consensus 444 ~ 444 (465)
T TIGR02628 444 E 444 (465)
T ss_pred c
Confidence 3
No 75
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.15 E-value=0.051 Score=60.19 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCC
Q 007552 269 LNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 269 ~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
+++-+++.+.-.++..++... .....++.|.++||+++++.+.+.+.+.| +.++.... ..++.|+|||+.|+.-.+.
T Consensus 380 i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 380 IVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcCc
Confidence 444455555444444444321 11124788999999999999999999999 78876554 5568899999999865554
No 76
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.07 E-value=0.053 Score=60.52 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=55.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCC-CCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHH
Q 007552 261 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 261 itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 339 (599)
-+|.+ +++-+++.+.-.++..++...-....++.|.++||+ ++++.+.+.+.+.| +.++....+ .++.|+|||+
T Consensus 405 ~~~~~---~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~ 479 (536)
T TIGR01234 405 TDAPL---LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAI 479 (536)
T ss_pred CCHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHH
Confidence 34544 444444444433333333321112357899999999 99999999999999 788866555 4688999999
Q ss_pred hhhhhcCC
Q 007552 340 QGGILSGE 347 (599)
Q Consensus 340 ~a~~ls~~ 347 (599)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876553
No 77
>PRK10331 L-fuculokinase; Provisional
Probab=95.00 E-value=0.053 Score=59.52 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHH
Q 007552 261 LTRARFEELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 261 itr~~fe~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 339 (599)
-+|.+ +.+-+++.+.-.++..++... .....++.|.++||++++|...+.+.+.| +.++.... ..++.++|||+
T Consensus 358 ~~~~~---l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~ 432 (470)
T PRK10331 358 TTRGH---FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAM 432 (470)
T ss_pred cCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHH
Confidence 34544 445555555444444444321 11235789999999999999999999999 78876554 45788999999
Q ss_pred hhhhhcCC
Q 007552 340 QGGILSGE 347 (599)
Q Consensus 340 ~a~~ls~~ 347 (599)
.|+.-.+.
T Consensus 433 la~~~~G~ 440 (470)
T PRK10331 433 FGWYGVGE 440 (470)
T ss_pred HHHHhcCC
Confidence 99865543
No 78
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=94.83 E-value=0.18 Score=50.69 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=56.6
Q ss_pred ccEEEEeCCCCCH-HHHHHHHHHHHHcCCceeecccchHHHHHHhc---cccCC----CccEEEEEEcCCCEEEEEEEEE
Q 007552 105 KDAVVTVPAYFND-AQRQATKDAGIIAGLNVARIINEPTAAAIAYG---LDKKG----GEKNILVFDLGGGTFDVSILTI 176 (599)
Q Consensus 105 ~~~VitVPa~~~~-~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~----~~~~vlVvD~Gggt~dvsv~~~ 176 (599)
..+|+|=|.+--+ -|.....-..+..++.-+ ..-+.|+..++- .+..+ ...+.+|+|-|.+-|.+.-+-.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 4688888876433 344444445566666643 344444433333 22221 3458999999999888765432
Q ss_pred eCCeEEEEEecCCCCCccchHhHHHHHHHH
Q 007552 177 DNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 206 (599)
Q Consensus 177 ~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~ 206 (599)
..... .+.. -..+||..++..|.+.+.
T Consensus 172 g~~~~--qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 GIPYY--QAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred Ccchh--hceE-EeecchHHHHHHHHHHhh
Confidence 22111 1111 257899999998887764
No 79
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=94.81 E-value=1.5 Score=44.09 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHc----CCCCCCCCCCCchhhhchHHHhh
Q 007552 268 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF----DGKEPNKGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 268 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f----~~~~i~~~~~p~~aVA~GAa~~a 341 (599)
++++...+.+...+...+.+...... .|+|+||....+.+++.+.+.+ +..++.....|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44555555566666666665433221 2999999999977777774433 34455667789999999999986
No 80
>PLN02295 glycerol kinase
Probab=94.77 E-value=0.072 Score=59.13 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----CC--CccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHh
Q 007552 267 EELNNDLFRKTMGPVKKAMEDA----GL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 340 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~----~~--~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 340 (599)
..+++-+++.+.-.++.+++.. +. ....++.|.++||++++|.+.+.+.+.| +.++... +..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHH
Confidence 3344455555554444444432 11 1235788999999999999999999999 7888554 4567889999999
Q ss_pred hhhhcCC
Q 007552 341 GGILSGE 347 (599)
Q Consensus 341 a~~ls~~ 347 (599)
|+.-.+.
T Consensus 457 A~~~~G~ 463 (512)
T PLN02295 457 AGLAVGL 463 (512)
T ss_pred HHhhcCc
Confidence 9765543
No 81
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.73 E-value=0.041 Score=48.21 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=26.1
Q ss_pred EEEEEcCCCEEEEEEEEE-eCCeEEEEEecCCCCCc--cchHh--HHHHHH
Q 007552 159 ILVFDLGGGTFDVSILTI-DNGVFEVLSTNGDTHLG--GEDFD--QRVMEY 204 (599)
Q Consensus 159 vlVvD~Gggt~dvsv~~~-~~~~~~v~~~~~~~~lG--G~~iD--~~l~~~ 204 (599)
++++|+|++++.+.+++. ..+.+.++..+..+..| |..|. +.+..-
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~ 51 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKA 51 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHH
Confidence 589999999999999997 34455665443222222 56665 554443
No 82
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.72 E-value=1.2 Score=49.42 Aligned_cols=51 Identities=27% Similarity=0.286 Sum_probs=37.9
Q ss_pred ccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhh
Q 007552 292 KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 344 (599)
Q Consensus 292 ~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~l 344 (599)
...++.|.++||+++.+...+++.+.+ +.++..+.. .|+.+.|+|..++.-
T Consensus 399 g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~-~e~~a~g~A~~~~~~ 449 (502)
T COG1070 399 GKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEV-EEAGALGGAALAAAA 449 (502)
T ss_pred CCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCc-ccchHHHHHHHHHHH
Confidence 345778999999999999999999999 788775544 455555555544443
No 83
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.69 E-value=0.074 Score=58.92 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=43.5
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcC
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 346 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~ 346 (599)
.++.|.++||+++++...+.+.+.| +.++....+ .++.++|||+.|+.-.+
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~-~e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPES-YESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCC-CCcchHHHHHHHHHhcC
Confidence 5789999999999999999999999 788865544 46889999999976544
No 84
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.66 E-value=0.065 Score=58.50 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHh
Q 007552 262 TRARFEELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 340 (599)
Q Consensus 262 tr~~fe~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 340 (599)
+|.++ ++-+++.+.-.++..++... .....++.|.++||+++++...+.+.+.+ +.++... +.++.|+|||+.
T Consensus 357 ~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~ 430 (454)
T TIGR02627 357 SDAEL---ARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGV 430 (454)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHH
Confidence 55443 44444444433333333221 11135789999999999999999999999 7888543 367999999999
Q ss_pred hhhhcCC
Q 007552 341 GGILSGE 347 (599)
Q Consensus 341 a~~ls~~ 347 (599)
|+.-.+.
T Consensus 431 a~~~~G~ 437 (454)
T TIGR02627 431 QLMALDE 437 (454)
T ss_pred HHHhcCC
Confidence 9875554
No 85
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.11 Score=56.13 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc-cCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcC
Q 007552 268 ELNNDLFRKTMGPVKKAMEDAGLEK-NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 346 (599)
Q Consensus 268 ~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~ 346 (599)
.+..-.++.|.-.++..|+...... ..|+.+.+.||.|+.|.+.+.+.+.+ |.++..+.+++. ++.|||+.|+..++
T Consensus 387 hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 387 HLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcC
Confidence 3333444444444444444332222 56888999999999999999999999 789988888777 99999999998776
Q ss_pred C
Q 007552 347 E 347 (599)
Q Consensus 347 ~ 347 (599)
.
T Consensus 465 ~ 465 (516)
T KOG2517|consen 465 K 465 (516)
T ss_pred C
Confidence 5
No 86
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.34 E-value=0.093 Score=58.35 Aligned_cols=52 Identities=29% Similarity=0.357 Sum_probs=43.8
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCC
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
.++.|.++||+++++...+.+.+.+ +.++....+ .++.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVV-KEATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEecc-cCchHHHHHHHHHHHhCC
Confidence 4789999999999999999999999 788866544 468899999999865543
No 87
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.23 E-value=0.13 Score=54.12 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=47.2
Q ss_pred HhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhh
Q 007552 287 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 287 ~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
..+........|+.+||.|+...|-+.|.+.| +.++... +..+++|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 34566667889999999999999999999999 7777654 7889999999999864
No 88
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.18 E-value=0.095 Score=57.49 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCC
Q 007552 269 LNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 269 ~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
+++-+++.+.-.++..++... .....++.|.++||+++++...+.+.+.+ +.++... +.++.++|||+.|+.-.+.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG--PVEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh-CCCeeeC--ChhHHHHHHHHHHHHHcCC
Confidence 344444444444444433321 11134788999999999999999999999 7888553 2479999999999865554
No 89
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=93.93 E-value=0.5 Score=47.65 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=39.1
Q ss_pred cCCCeEEEecC-CCCcHHHHHHHHhHcC--CCCCCCCCCCchhhhchHHH
Q 007552 293 NQIDEIVLVGG-STRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 293 ~~i~~ViLvGG-~srip~v~~~l~~~f~--~~~i~~~~~p~~aVA~GAa~ 339 (599)
..+..|+++|| .+..|.+++.+...+. +.++..+.++...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 6789999999988762 35667778899999999986
No 90
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=93.24 E-value=11 Score=38.68 Aligned_cols=93 Identities=22% Similarity=0.326 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHh--CCCcccEEEEeCCCCCHHH------------HHHHHHHH-HHcCCceeecccchHHH
Q 007552 80 SPEEISAMILTKMKETAEAFL--GKKIKDAVVTVPAYFNDAQ------------RQATKDAG-IIAGLNVARIINEPTAA 144 (599)
Q Consensus 80 s~e~v~a~~L~~l~~~a~~~~--~~~~~~~VitVPa~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~Aa 144 (599)
++++++..+.+.+.+..++.- ..++..+.|++|...+... ...+.+.. +..|++ +.+.|+..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 566666666665555544321 1245677888887554321 11233333 234665 5799999999
Q ss_pred HHHhccccC-CCccEEEEEEcCCCEEEEEEE
Q 007552 145 AIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 174 (599)
Q Consensus 145 al~y~~~~~-~~~~~vlVvD~Gggt~dvsv~ 174 (599)
|++-..... ...++++++.+|.|- -.+++
T Consensus 111 alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 986543222 134678888888776 44444
No 91
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=90.70 E-value=0.22 Score=53.35 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCcc--CCCeEEEecCCCCcHHHHHHHHhHcC-------CCCCCCCCCCchhhhchHHHhhhh
Q 007552 278 MGPVKKAMEDAGLEKN--QIDEIVLVGGSTRIPKVQQLLKDYFD-------GKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 278 ~~~i~~~l~~~~~~~~--~i~~ViLvGG~srip~v~~~l~~~f~-------~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
.+++..+|.+.-..-. -+.+|+|+||+|.+|++.++|.+.+- ...+....||-..+=+||+.+|+.
T Consensus 540 ~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 540 AEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 4445555554322212 28899999999999999999998772 234566778999999999999875
No 92
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.32 E-value=3 Score=45.65 Aligned_cols=96 Identities=22% Similarity=0.199 Sum_probs=57.9
Q ss_pred EechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCC---HHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCC
Q 007552 78 VFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFN---DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG 154 (599)
Q Consensus 78 ~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~---~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~ 154 (599)
.++++ .+...+..|+..++...+..+..+ ..|=.... ...-+.+..+-+..|+++-.+=-|-+|--.++|.-...
T Consensus 48 ~L~~e-ai~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~ 125 (492)
T COG0248 48 NLSEE-AIERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTL 125 (492)
T ss_pred CcCHH-HHHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcC
Confidence 45554 345555566655555545555553 22221111 22244566777778998755555566655444544443
Q ss_pred C-ccEEEEEEcCCCEEEEEEEE
Q 007552 155 G-EKNILVFDLGGGTFDVSILT 175 (599)
Q Consensus 155 ~-~~~vlVvD~Gggt~dvsv~~ 175 (599)
. ....+|+|+|||+|.+++..
T Consensus 126 ~~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 126 PRKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred CCCCCEEEEEecCCeEEEEEec
Confidence 3 67789999999999999987
No 93
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.09 E-value=3.9 Score=42.20 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCC---CCCCCCCC----chhhhchHHHhhhhhc
Q 007552 273 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK---EPNKGVNP----DEAVAYGAAVQGGILS 345 (599)
Q Consensus 273 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~---~i~~~~~p----~~aVA~GAa~~a~~ls 345 (599)
+++.+...|...+. ...+++.|+|.|-.+++|-+.+.+++.|... ++. .+.+ ....|.|||+.|.-+.
T Consensus 243 ~~E~i~k~V~~l~~----~~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~gla 317 (343)
T PF07318_consen 243 MIESIVKAVASLLA----SVPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLA 317 (343)
T ss_pred HHHHHHHHHHHHhc----ccCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhh
Confidence 34444444443333 2346788999999999999998888877321 121 1122 2558999999998776
Q ss_pred CC
Q 007552 346 GE 347 (599)
Q Consensus 346 ~~ 347 (599)
+.
T Consensus 318 GG 319 (343)
T PF07318_consen 318 GG 319 (343)
T ss_pred cc
Confidence 55
No 94
>PRK10854 exopolyphosphatase; Provisional
Probab=89.56 E-value=1.8 Score=47.99 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCceeecccchHHHHHHh-ccccCC-CccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchH
Q 007552 120 RQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 197 (599)
Q Consensus 120 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~-~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 197 (599)
...+.++-+..|+++ .+|+..+=|.+.| +..... .....+|+|+|||+|.+++++-.. .....+ ..+|...+
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~--~~~~~S---~~lG~vrl 172 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFE--PILVES---RRMGCVSF 172 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCC--eeEeEE---EecceeeH
Confidence 334445556679987 5565555555444 443322 234689999999999999986322 211111 26777777
Q ss_pred hHHH
Q 007552 198 DQRV 201 (599)
Q Consensus 198 D~~l 201 (599)
.+.+
T Consensus 173 ~e~f 176 (513)
T PRK10854 173 AQLY 176 (513)
T ss_pred Hhhh
Confidence 6654
No 95
>PRK09604 UGMP family protein; Validated
Probab=89.52 E-value=29 Score=36.14 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=36.6
Q ss_pred cCCCeEEEecCCCCcHHHHHHHHhHcC--CCCCCCCC---CCchhhhchHHHhhh
Q 007552 293 NQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGG 342 (599)
Q Consensus 293 ~~i~~ViLvGG~srip~v~~~l~~~f~--~~~i~~~~---~p~~aVA~GAa~~a~ 342 (599)
.+++.|+|.||.+...++++.|.+.+. +.++..+. ..|.++++|++=+-.
T Consensus 253 ~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 253 TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 357789999999999999999999873 22333322 347889988884443
No 96
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=89.33 E-value=1.7 Score=48.00 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=61.6
Q ss_pred EechHHHHHHHHHHHHHHHHHHhCCCcccE-EEEeCCCCC-HHHHHHHHHHHHHcCCceeecccchHHHHHHh-ccccCC
Q 007552 78 VFSPEEISAMILTKMKETAEAFLGKKIKDA-VVTVPAYFN-DAQRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG 154 (599)
Q Consensus 78 ~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~-VitVPa~~~-~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~ 154 (599)
.++++-+ ...+..|+...+..-.-.+.++ +++--|.=. ......+.++-+..|+++ ++|+-.+=|.+.| +.....
T Consensus 51 ~Ls~e~i-~r~~~~L~~F~~~~~~~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l 128 (496)
T PRK11031 51 ALSNEAM-ERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTT 128 (496)
T ss_pred CcCHHHH-HHHHHHHHHHHHHHHhCCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhcc
Confidence 4555443 4455555544443323333332 222222211 223444555566679997 5555555444444 443322
Q ss_pred -CccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHH
Q 007552 155 -GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 201 (599)
Q Consensus 155 -~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l 201 (599)
.....+|+|+|||+|.+++++ ++.+. .....++|...+.+.+
T Consensus 129 ~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 129 GGADQRLVVDIGGASTELVTGT--GAQAT---SLFSLSMGCVTWLERY 171 (496)
T ss_pred CCCCCEEEEEecCCeeeEEEec--CCcee---eeeEEeccchHHHHHh
Confidence 234589999999999999886 32221 1223578877765554
No 97
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=88.73 E-value=0.79 Score=46.66 Aligned_cols=73 Identities=25% Similarity=0.447 Sum_probs=40.9
Q ss_pred HHHHHHHcCCceeecccchHHHHHHh-ccccC-CCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHH
Q 007552 123 TKDAGIIAGLNVARIINEPTAAAIAY-GLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 200 (599)
Q Consensus 123 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~-~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~ 200 (599)
+...-+..|+++ .+++..+=|.+.| +.... ......+|+|+|||+|.+++++ ++.+.- ....++|...+.+.
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl~e~ 150 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFE--NGKVVF---SQSLPLGAVRLTER 150 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEE--TTEEEE---EEEES--HHHHHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEE--CCeeeE---eeeeehHHHHHHHH
Confidence 334445669987 4555444444433 32222 2456789999999999999886 333221 12257888777655
Q ss_pred H
Q 007552 201 V 201 (599)
Q Consensus 201 l 201 (599)
+
T Consensus 151 ~ 151 (285)
T PF02541_consen 151 F 151 (285)
T ss_dssp H
T ss_pred H
Confidence 4
No 98
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=88.36 E-value=1.6 Score=44.84 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=61.2
Q ss_pred EechHH--HHHHHHHHHHHHHHHHhCCCcccE-EEEeCCCCCHHHHHHHHHH-HHHcCCceeecccchHHHHHHh-cccc
Q 007552 78 VFSPEE--ISAMILTKMKETAEAFLGKKIKDA-VVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAY-GLDK 152 (599)
Q Consensus 78 ~~s~e~--v~a~~L~~l~~~a~~~~~~~~~~~-VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y-~~~~ 152 (599)
.++++. -+...|+..++.+..+ + +.++ +++--|.=...-+..+.+. -+..|+++ ++++..+=|.+.| +...
T Consensus 45 ~i~~e~i~~~~~~l~~f~~~~~~~-~--v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~ 120 (300)
T TIGR03706 45 RLSEEAIERALEALKRFAELLRGF-P--VDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAH 120 (300)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhC-C--CCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHh
Confidence 455553 3334555555555433 3 3222 2333332222233344433 35679887 5777777666655 3222
Q ss_pred CCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHH
Q 007552 153 KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 201 (599)
Q Consensus 153 ~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l 201 (599)
.......+++|+|||+|.++++.- +.+ . .....++|...+.+.+
T Consensus 121 ~~~~~~~~v~DiGGGSte~~~~~~--~~~--~-~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 121 TLPIADGLVVDIGGGSTELILGKD--FEP--G-EGVSLPLGCVRLTEQF 164 (300)
T ss_pred CCCCCCcEEEEecCCeEEEEEecC--CCE--e-EEEEEccceEEhHHhh
Confidence 212223599999999999998752 221 1 1223567777776553
No 99
>PLN02666 5-oxoprolinase
Probab=87.28 E-value=7.2 Score=47.75 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHH
Q 007552 261 LTRARFEELNNDLFR-KTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 261 itr~~fe~~~~~~~~-~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~ 339 (599)
++-++...-+..+.+ .....|+.+....+.++.+. .++..||++ |...-.|.+.++=..+..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 444454444444333 33456666666666665442 244445553 77888899999434477888999999999986
Q ss_pred hh
Q 007552 340 QG 341 (599)
Q Consensus 340 ~a 341 (599)
.-
T Consensus 531 ad 532 (1275)
T PLN02666 531 AD 532 (1275)
T ss_pred hh
Confidence 43
No 100
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=87.25 E-value=34 Score=36.11 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=56.8
Q ss_pred eecCHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCccCCCe-EEEecCCCCcHHHHHHHHhHcCCCCCCC-CCCCchhhhc
Q 007552 259 EPLTRARFEELNNDLFRKTM-GPVKKAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNK-GVNPDEAVAY 335 (599)
Q Consensus 259 ~~itr~~fe~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~srip~v~~~l~~~f~~~~i~~-~~~p~~aVA~ 335 (599)
..-.+.++-..++..+++++ ..++..+++.+ ++. |.|.||....-..-..|.+..+-.++.. +.-.|.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 34567788888888887775 56777777755 455 9999999988888888887743334433 3345899999
Q ss_pred hHHHhhhhhc
Q 007552 336 GAAVQGGILS 345 (599)
Q Consensus 336 GAa~~a~~ls 345 (599)
|||+++....
T Consensus 206 GaA~~~~~~~ 215 (360)
T PF02543_consen 206 GAALYAWHEL 215 (360)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999997543
No 101
>PRK14878 UGMP family protein; Provisional
Probab=86.89 E-value=36 Score=35.30 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
.+..|+|+||.+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 4678999999999999999999976
No 102
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=84.81 E-value=2.3 Score=44.77 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCC----CCCCchhhhchHHHhhh
Q 007552 267 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~----~~~p~~aVA~GAa~~a~ 342 (599)
++++.-+.+=+...|.+.++... ..++.|+++||+++.|++.+.|++.+++.++.. .++|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 34444444444555555555543 237899999999999999999999997655432 23444333444566665
Q ss_pred h
Q 007552 343 I 343 (599)
Q Consensus 343 ~ 343 (599)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 4
No 103
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=84.75 E-value=4.7 Score=40.76 Aligned_cols=173 Identities=20% Similarity=0.215 Sum_probs=91.4
Q ss_pred ccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEE-----EEEecCCCCCccchHhHHHHHHHHHHHHhh
Q 007552 138 INEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFE-----VLSTNGDTHLGGEDFDQRVMEYFIKLIKKK 212 (599)
Q Consensus 138 i~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~-----v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~ 212 (599)
+..|+=..++|.......-.+++|.|+-.-|..+.|-. +++. .+...|-.+ | .+|-.++..+-..
T Consensus 129 ~aSpEKi~iay~a~~~~~~~~~ivsDiSSNTVtlaVk~---GKIVggidaciGAPG~lh-G--pLDlE~ir~Id~g---- 198 (326)
T TIGR03281 129 IASPEKVSIAYNAYCLTGFKDFIVSDISSNTVTLLIKD---GKIIGGFDACVGAPGVLH-G--PLDLEAIRNIDAG---- 198 (326)
T ss_pred cCCHHHHHHHHHHHHHcCCCCEEEEecCCCeEEEEEEC---CEEEccccccccCccccc-C--cccHHHHHhcccC----
Confidence 45677777777554443347899999999988777643 3220 001112122 3 3444444332110
Q ss_pred cCCCCccCHHHHHHHHHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHHHHHHHH------HHHHHHHHHHHHHH
Q 007552 213 HGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND------LFRKTMGPVKKAME 286 (599)
Q Consensus 213 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~fe~~~~~------~~~~i~~~i~~~l~ 286 (599)
.. .+-..||..--..+ -..+. ....++++|.+.+.. -++.+...+-..+.
T Consensus 199 ---~~---------------tan~aFs~aGa~kI--a~~~~----~~~~~~eE~~~~~~~~e~~~lA~dal~~~vameIa 254 (326)
T TIGR03281 199 ---KK---------------TANEAFSHAGAVKI--ACADK----GVENAKEEILNNYNGDEPGRLALDSLAMSVAMEIA 254 (326)
T ss_pred ---cc---------------cHHHHHhhcCeeEE--ecccc----cccCCHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 01 01122322222111 11111 124567777665522 22333332222222
Q ss_pred HhCCCccCCCeEEEecC--CCCcH-HHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCC
Q 007552 287 DAGLEKNQIDEIVLVGG--STRIP-KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 287 ~~~~~~~~i~~ViLvGG--~srip-~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
...........|+|.|- +++.| .+++.|++.| ..++.. +.. ++.|.|+|+.|.-+.+.
T Consensus 255 sLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~-L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 255 SLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLV-LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred hheeccCCCCcEEEeCcchhccCchHHHHHHHHHh-CCCeEE-ecc-hhhhhhHHHHHHHHhCC
Confidence 21111123447999987 99999 9999999999 444432 233 89999999999877655
No 104
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=84.47 E-value=2.9 Score=44.83 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-ccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhc
Q 007552 267 EELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 345 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls 345 (599)
+.+++-.++.|.-...++++...-. ...++.+-+=||.++..++.+...+.+ +.++.++.+ .|+-|+|||+.|..-.
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGla~ 451 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGLAV 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhhhh
Confidence 4455555565555555554432211 125788888899999999999999999 788877644 6889999999998765
Q ss_pred C
Q 007552 346 G 346 (599)
Q Consensus 346 ~ 346 (599)
+
T Consensus 452 G 452 (499)
T COG0554 452 G 452 (499)
T ss_pred C
Confidence 5
No 105
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=83.45 E-value=23 Score=36.39 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 278 MGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 278 ~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
.+.++++++. ..++.|+|.||.+...++++.|.+.+
T Consensus 247 ~~~~~~~~~~-----~g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 247 IEKTKRALKD-----TGPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3444444443 34778999999999999999999887
No 106
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=82.41 E-value=39 Score=35.32 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
.++.|+++||-+...+||+.+++..
T Consensus 263 ~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 263 GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 107
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=80.57 E-value=12 Score=36.97 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=55.8
Q ss_pred CCCcccEEE--EeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccC-CCccEEEEEEcCCCEEEEEEEEEe
Q 007552 101 GKKIKDAVV--TVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTID 177 (599)
Q Consensus 101 ~~~~~~~Vi--tVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~-~~~~~vlVvD~Gggt~dvsv~~~~ 177 (599)
+..+..++. .+|.+|+. -+++++++..+|.+. .+++-..||.+....+.. .....++++|+|=|.|-..++ .
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v--~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALV--K 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEE--e
Confidence 556778888 88988763 345666666666665 444555444443333222 135679999999999998888 3
Q ss_pred CCeEEEEEecCCCCCccchHh
Q 007552 178 NGVFEVLSTNGDTHLGGEDFD 198 (599)
Q Consensus 178 ~~~~~v~~~~~~~~lGG~~iD 198 (599)
++.+.=+.......+-...+.
T Consensus 186 ~~rI~GvfEHHT~~l~~~kL~ 206 (254)
T PF08735_consen 186 DGRIYGVFEHHTGMLTPEKLE 206 (254)
T ss_pred CCEEEEEEecccCCCCHHHHH
Confidence 444333333333455554443
No 108
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=80.12 E-value=4.7 Score=43.43 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=56.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeec---ccchHHHHHHhccccC--CCccEEEEEEcCCCEEEEEEEEEeCCe
Q 007552 106 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDKK--GGEKNILVFDLGGGTFDVSILTIDNGV 180 (599)
Q Consensus 106 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~--~~~~~vlVvD~Gggt~dvsv~~~~~~~ 180 (599)
-++||==+--.+.+|..+..-+..||==++.- =-|+.-|+-..|-... .....|+=+|+||||+.+++++ .|.
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~--~G~ 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFD--NGE 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEE--CCE
Confidence 46677777777888888888888888544332 1244433332221111 1456889999999999999987 332
Q ss_pred EEEEEecCCCCCccchH
Q 007552 181 FEVLSTNGDTHLGGEDF 197 (599)
Q Consensus 181 ~~v~~~~~~~~lGG~~i 197 (599)
++++.. .++||+-|
T Consensus 165 --v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 165 --VIDTAC-LDIGGRLI 178 (473)
T ss_pred --EEEEEE-EeeccEEE
Confidence 333333 68999877
No 109
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.11 E-value=1.9 Score=49.08 Aligned_cols=40 Identities=28% Similarity=0.505 Sum_probs=28.4
Q ss_pred eecccchHHHHHHhccc-cCCCccEEEEEEcCCCEEEEEEEE
Q 007552 135 ARIINEPTAAAIAYGLD-KKGGEKNILVFDLGGGTFDVSILT 175 (599)
Q Consensus 135 ~~li~Ep~Aaal~y~~~-~~~~~~~vlVvD~Gggt~dvsv~~ 175 (599)
..+.+=|.|..+..... -...+ +++++||||.|||++++.
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeee
Confidence 34667787766654433 22122 699999999999999987
No 110
>PRK00976 hypothetical protein; Provisional
Probab=79.63 E-value=12 Score=38.57 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=39.1
Q ss_pred CCCeEEEecCCCCcH--HHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhhhhcCC
Q 007552 294 QIDEIVLVGGSTRIP--KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 294 ~i~~ViLvGG~srip--~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
+++.|+|-||-|+.+ .+.+.+++.+ ... ...-..++.++|||+.|....+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l-~~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELL-DKK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHh-ccc--ccccCCchHHHHHHHHHHHHhCC
Confidence 578899999999998 8889998888 332 22234589999999998776544
No 111
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=78.43 E-value=1.2e+02 Score=33.87 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcC--CCCCCCCC---CCchhhhchHHHhhhhhc
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGILS 345 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~--~~~i~~~~---~p~~aVA~GAa~~a~~ls 345 (599)
.++.|+|+||.+...++++.|.+.+. +.++..+. ..|.+++.|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 46789999999999999999996651 23333332 457889998887655443
No 112
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=77.58 E-value=9.6 Score=40.11 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCC----CCCchhhhchHHHhhhh
Q 007552 275 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG----VNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 275 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~----~~p~~aVA~GAa~~a~~ 343 (599)
+=+...|.+.+.... ..++.|+++||+++.|+|.++|++.++ .++... ++++.-=|..-|++|..
T Consensus 270 ~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 270 ELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 333344445554322 235689999999999999999999995 444321 34554444446666654
No 113
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=77.24 E-value=93 Score=32.08 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcCC--CCCCCCC---CCchhhhchHH
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFDG--KEPNKGV---NPDEAVAYGAA 338 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~~--~~i~~~~---~p~~aVA~GAa 338 (599)
.++.|+|.||.+...++++.|.+.+.. .++..+. .-|.++++|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 567899999999999999999988721 2232221 34778888876
No 114
>PRK03011 butyrate kinase; Provisional
Probab=75.33 E-value=9.2 Score=40.26 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcC---CCCCCCCCCCchhhhchHHHh
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAVQ 340 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~---~~~i~~~~~p~~aVA~GAa~~ 340 (599)
++|.|+|.||.+..+.+++.|++.+. ...+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999999999988773 233444555668999998754
No 115
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=75.22 E-value=9.6 Score=28.72 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 007552 95 TAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNV 134 (599)
Q Consensus 95 ~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 134 (599)
..+.+.... ...++.|+.++..+|..+.+.|+..||..
T Consensus 7 ~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 7 ALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 334444433 66789999999999999999999999975
No 116
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=75.16 E-value=62 Score=33.56 Aligned_cols=51 Identities=16% Similarity=0.397 Sum_probs=35.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 263 RARFEELNNDL----FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 263 r~~fe~~~~~~----~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
.++.+++|..+ ++-+++..+++|+.. .++.++++||-+....+|+++++..
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~-----~~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHT-----GKKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCEEEEeccHHHhHHHHHHHHHHH
Confidence 34445555544 444445555666653 4667999999999999999999876
No 117
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=26 Score=36.52 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=42.5
Q ss_pred CCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCC----CCCCchhhhchHHHhhhhh
Q 007552 290 LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGGIL 344 (599)
Q Consensus 290 ~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~----~~~p~~aVA~GAa~~a~~l 344 (599)
......+..+++||+.+.|++.+.|...+++..+.. .++++..=|.+-|+.|...
T Consensus 286 ~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 286 TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 345678899999999999999999999997655543 4567766677777777653
No 118
>PLN02920 pantothenate kinase 1
Probab=74.25 E-value=22 Score=37.58 Aligned_cols=51 Identities=12% Similarity=-0.081 Sum_probs=37.5
Q ss_pred ccCCCeEEEecCCCCcH-HHHHHHHhH---c--CCCCCCCCCCCchhhhchHHHhhh
Q 007552 292 KNQIDEIVLVGGSTRIP-KVQQLLKDY---F--DGKEPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 292 ~~~i~~ViLvGG~srip-~v~~~l~~~---f--~~~~i~~~~~p~~aVA~GAa~~a~ 342 (599)
..+++.|+++|+..|.+ ..++.|.-. + ++.+.....+....-|+||.+...
T Consensus 295 ~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 295 RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 35789999999999998 677644332 2 344556666888999999987653
No 119
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=73.15 E-value=26 Score=33.87 Aligned_cols=60 Identities=15% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCC--CCCCCCCCCchhhhchHHH
Q 007552 274 FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG--KEPNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 274 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~--~~i~~~~~p~~aVA~GAa~ 339 (599)
+.-+++.-++++.. ..-+.|++|||-+..--+|+++...... -++. ..|-..|+--|+.+
T Consensus 239 FamLVEiTERAMAh-----~~s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~f-aTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 239 FAMLVEITERAMAH-----CGSKEVLIVGGVGCNERLQEMMAIMCSERGGKLF-ATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHhh-----cCCCcEEEEecccccHHHHHHHHHHHHhcCCceE-ecccceeeeCchHH
Confidence 33334444455444 3345799999999999999999887732 1222 23445666666654
No 120
>PRK09698 D-allose kinase; Provisional
Probab=70.27 E-value=1.3e+02 Score=30.55 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=31.6
Q ss_pred cCCCeEEEecCCCCc-----HHHHHHHHhHcC------CCCCCCCCCCchhhhchHHHhhh
Q 007552 293 NQIDEIVLVGGSTRI-----PKVQQLLKDYFD------GKEPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 293 ~~i~~ViLvGG~sri-----p~v~~~l~~~f~------~~~i~~~~~p~~aVA~GAa~~a~ 342 (599)
-+++.|+|-||.+.. +.+++.+++..- ..++......+.+.++|||..+.
T Consensus 235 ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 235 FDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred hCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 356788888887764 345666665441 11233444557888999998864
No 121
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=69.45 E-value=8.1 Score=44.52 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=37.7
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcC--CCCCCCC---CCCchhhhchHHHhhh
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKG---VNPDEAVAYGAAVQGG 342 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~--~~~i~~~---~~p~~aVA~GAa~~a~ 342 (599)
.++.|+|+||..+..++++.+.+.+. +.++..+ .-.|.+++.|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 57789999999999999999998873 2333322 2348899999988774
No 122
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=68.40 E-value=5.2 Score=41.23 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=17.2
Q ss_pred cEEEEEEcCCCEEEEEEEE
Q 007552 157 KNILVFDLGGGTFDVSILT 175 (599)
Q Consensus 157 ~~vlVvD~Gggt~dvsv~~ 175 (599)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4589999999999999986
No 123
>PRK09343 prefoldin subunit beta; Provisional
Probab=66.70 E-value=88 Score=27.29 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCC
Q 007552 530 DEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA-PGAG 586 (599)
Q Consensus 530 ~e~~~i~~~l~e~~~WL~~~~~~t~~~~~~kl~~L~~~~~~i~~r~~e~~~~~-~~~~ 586 (599)
.++..+...|++-.+.+.. ....++.+...|+.-+......+++..+++ ||+|
T Consensus 67 qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 67 VDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred ccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4566666666666666664 477888888899999999888888885444 5554
No 124
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=66.48 E-value=21 Score=27.02 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 007552 93 KETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVA 135 (599)
Q Consensus 93 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~ 135 (599)
.+..+.+.... ....++.|+.++..+|..+.+.|+..||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 34444444433 3567889999999999999999999999753
No 125
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=63.25 E-value=45 Score=36.49 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=69.9
Q ss_pred EechHHHHHHHHHHHHHHHHHHhCCC---c-ccEEEEeCCCCCHHHHHHHHHH-HHHcCCceeecccchHHHHHHhcccc
Q 007552 78 VFSPEEISAMILTKMKETAEAFLGKK---I-KDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDK 152 (599)
Q Consensus 78 ~~s~e~v~a~~L~~l~~~a~~~~~~~---~-~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~ 152 (599)
.++-=++...+|.|+..+ +|.. + .-+++|=+..-...+|+.|.+- .+..|++-+.+=-+..=+ +-+..
T Consensus 90 VvtNwel~E~ilDY~F~~----LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS---~~hN~ 162 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFGK----LGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFS---FYHNY 162 (645)
T ss_pred ccccHHHHHHHHHHHHHh----cCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHH---Hhhcc
Confidence 344445555666555444 3422 2 3577888877666778888554 567788876553332221 11111
Q ss_pred C-CCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHH
Q 007552 153 K-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 206 (599)
Q Consensus 153 ~-~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~ 206 (599)
. ..+..-||+++|..+|.|-.+--+...+ ....-.++||.....-|.+.|.
T Consensus 163 ~~~~~~~~liis~g~~~T~vipvldG~~il---~~~kRiN~GG~qa~dYL~~Lmq 214 (645)
T KOG0681|consen 163 GKSSNKSGLIISMGHSATHVIPVLDGRLIL---KDVKRINWGGYQAGDYLSRLMQ 214 (645)
T ss_pred CcccCcceEEEecCCCcceeEEEecCchhh---hcceeeccCcchHHHHHHHHHh
Confidence 1 1334689999999999987765333222 2233368999988766655544
No 126
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.61 E-value=23 Score=35.19 Aligned_cols=30 Identities=13% Similarity=0.361 Sum_probs=18.1
Q ss_pred HHhhhhHHHHHHhhccHHHHHHHHHH-Hhch
Q 007552 490 AEEDKKVKEKIDARNSLETYVYNMKN-QIND 519 (599)
Q Consensus 490 ~~~D~~~~~~~~a~N~LE~~i~~~~~-~l~~ 519 (599)
++..+..+.|..-.-+|.+-+++||. +|++
T Consensus 78 kes~~~l~dRetEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 78 KESENRLHDRETEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666677777788873 4444
No 127
>PRK09557 fructokinase; Reviewed
Probab=60.36 E-value=2e+02 Score=29.19 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=29.9
Q ss_pred cCCCeEEEecCCCCcHHHHHHHHhHcC--------CCCCCCCCCCchhhhchHHHhh
Q 007552 293 NQIDEIVLVGGSTRIPKVQQLLKDYFD--------GKEPNKGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 293 ~~i~~ViLvGG~srip~v~~~l~~~f~--------~~~i~~~~~p~~aVA~GAa~~a 341 (599)
-+++.|+|-||.+..+.+.+.+++.+. ..++....-.+.+.++|||+.+
T Consensus 243 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 243 LDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred hCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 356788888888777666555555441 1122223334678899998764
No 128
>PRK07058 acetate kinase; Provisional
Probab=59.42 E-value=1.2e+02 Score=32.28 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCC-CcHHHHHHHHhHc
Q 007552 271 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYF 318 (599)
Q Consensus 271 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~f 318 (599)
+-.+.++...|-..... + ..+|.|+++||-+ ..+.|++.|.+.+
T Consensus 299 d~f~yri~k~IGa~~a~--L--g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 299 DLFALRIAGEIARLAAT--L--GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHH--h--CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 33444444444444333 2 4699999999999 9999999999987
No 129
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=59.32 E-value=2.2e+02 Score=29.39 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=30.6
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcC--CCCCCCCC---CCchhhhch
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYG 336 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~--~~~i~~~~---~p~~aVA~G 336 (599)
.+..|+|.||.+...++++.|.+.+. +.++..+. -.|.++++|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 46789999999999999999999652 23333221 236677777
No 130
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=57.49 E-value=24 Score=35.34 Aligned_cols=50 Identities=28% Similarity=0.267 Sum_probs=38.0
Q ss_pred CCccCCCeEEEecCCCCcHHHHHHHHhHcC---CCCCCCCCCCchhhhchHHH
Q 007552 290 LEKNQIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 290 ~~~~~i~~ViLvGG~srip~v~~~l~~~f~---~~~i~~~~~p~~aVA~GAa~ 339 (599)
.-+..+|.|+|+||.++...+-++|.++.. ...+.-.-+-.+|.|.||..
T Consensus 292 vL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 292 VLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred hcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 345789999999999999999999988762 22233444667899999864
No 131
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=57.16 E-value=2.3e+02 Score=28.86 Aligned_cols=101 Identities=10% Similarity=0.040 Sum_probs=56.5
Q ss_pred EecCCceEEEEEEeCCceeEechHHHHHHHHHHHHHHHHHHhCC----CcccEEEEeCCCCCHHHHHHHHHHHHHc--CC
Q 007552 59 VNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGK----KIKDAVVTVPAYFNDAQRQATKDAGIIA--GL 132 (599)
Q Consensus 59 v~~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~----~~~~~VitVPa~~~~~qr~~l~~Aa~~A--Gl 132 (599)
+++++.....-.- .+..+.+.++...+.=+..+...|...-|- +++.+++++-..=.+...+.+.+=.+.- ++
T Consensus 20 vd~~~~~~~~a~~-~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ 98 (336)
T KOG1794|consen 20 VDEDGTILGRAVG-GGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSV 98 (336)
T ss_pred ECCCCCEeeEeec-cccccccCCchHHHHHHHHHHHHHHhhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccch
Confidence 4555655544433 456677788888888888888888776653 3567888887665555544444443322 11
Q ss_pred -ceeecccchHHHHHHhccccCCCccEEEEE
Q 007552 133 -NVARIINEPTAAAIAYGLDKKGGEKNILVF 162 (599)
Q Consensus 133 -~~~~li~Ep~Aaal~y~~~~~~~~~~vlVv 162 (599)
+...+.++..+++. . ......+..||+-
T Consensus 99 ae~~~v~sDa~~sl~-a-~t~g~~~GiVLia 127 (336)
T KOG1794|consen 99 AENFYVTSDADGSLA-A-ATPGGEGGIVLIA 127 (336)
T ss_pred hheeeeehhHHHHHh-h-cCCCCCCcEEEEe
Confidence 22344455444443 2 2222234556653
No 132
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=55.06 E-value=91 Score=31.30 Aligned_cols=57 Identities=28% Similarity=0.390 Sum_probs=36.5
Q ss_pred CccCCCeEEEecCCCCcHHH----HHHHHhHcCC----CCC--CCCCCCchhhhchHHHhhhhhcCC
Q 007552 291 EKNQIDEIVLVGGSTRIPKV----QQLLKDYFDG----KEP--NKGVNPDEAVAYGAAVQGGILSGE 347 (599)
Q Consensus 291 ~~~~i~~ViLvGG~srip~v----~~~l~~~f~~----~~i--~~~~~p~~aVA~GAa~~a~~ls~~ 347 (599)
.....+.|+|.|-++++|-+ ++.|++.|.. ..+ ....--..-.|.|||+.|..+++.
T Consensus 270 ps~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 270 PSTYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cccCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 33557889999999998654 5666666521 121 112223355788999999777665
No 133
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.38 E-value=64 Score=32.08 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=44.9
Q ss_pred ecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHH
Q 007552 136 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLI 209 (599)
Q Consensus 136 ~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~ 209 (599)
.+++.-.||+....++.. ....+|+|+|-|.+..+++. .+.+.-+.......+.-..|-..|.+++.-++
T Consensus 208 v~mDskfaav~gal~dpa--a~palvVd~GngHttaalvd--edRI~gv~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 208 VAMDSKFAAVMGALVDPA--ADPALVVDYGNGHTTAALVD--EDRIVGVYEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred EEEcchhHhhhhcccCcc--cCceEEEEccCCceEEEEec--CCeEEEEeecccccCCHHHHHHHHHHHHhccc
Confidence 455666666655555443 34889999999999998875 44555444455566777666666655544433
No 134
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=52.82 E-value=37 Score=25.34 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 007552 91 KMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNV 134 (599)
Q Consensus 91 ~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 134 (599)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...|+..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444555555443 44679999 89999999999999999865
No 135
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=52.26 E-value=5.9 Score=42.58 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCC-----CC---------CCCCCCCchhhhchHHHh
Q 007552 275 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG-----KE---------PNKGVNPDEAVAYGAAVQ 340 (599)
Q Consensus 275 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~-----~~---------i~~~~~p~~aVA~GAa~~ 340 (599)
+.|+..|..++.. .....-.+.|.+|||+...|.+.+.|+++.-+ .+ .-+..||...+=.|||++
T Consensus 508 qsii~sid~~~sd-d~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIl 586 (618)
T KOG0797|consen 508 QSIISSIDSALSD-DTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAIL 586 (618)
T ss_pred hhHHHhhhhhccc-hhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhh
Confidence 3344444444433 12233457899999999999999999988732 11 123468888899999999
Q ss_pred hhhhc
Q 007552 341 GGILS 345 (599)
Q Consensus 341 a~~ls 345 (599)
|..-.
T Consensus 587 a~l~~ 591 (618)
T KOG0797|consen 587 AILDF 591 (618)
T ss_pred hHHHH
Confidence 97543
No 136
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=51.90 E-value=47 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=26.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 007552 107 AVVTVPAYFNDAQRQATKDAGIIAGLNVA 135 (599)
Q Consensus 107 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~~ 135 (599)
..+..|+.++..||..+.+.|+..||...
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 56889999999999999999999998753
No 137
>PF13941 MutL: MutL protein
Probab=51.75 E-value=11 Score=40.95 Aligned_cols=59 Identities=32% Similarity=0.492 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHH-----HcCCce------eecccchHHHHHHhccccCCCccEEEEEEcCCCEEEEEEEE
Q 007552 117 DAQRQATKDAGI-----IAGLNV------ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 175 (599)
Q Consensus 117 ~~qr~~l~~Aa~-----~AGl~~------~~li~Ep~Aaal~y~~~~~~~~~~vlVvD~Gggt~dvsv~~ 175 (599)
...|+++++... .-|++. ..+++-|.|+.....+-.......+|+||+||-|||+-.+.
T Consensus 197 ~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 197 EPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccCcccchhhhc
Confidence 444666665532 235543 24677777765433222221457899999999999996554
No 138
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=50.91 E-value=50 Score=31.84 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=22.5
Q ss_pred CccEEEEEEcCCCEEEEEEEEEeCC
Q 007552 155 GEKNILVFDLGGGTFDVSILTIDNG 179 (599)
Q Consensus 155 ~~~~vlVvD~Gggt~dvsv~~~~~~ 179 (599)
....+|++|+||.++-+..+++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 4567999999999999999999876
No 139
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=49.44 E-value=54 Score=33.20 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=32.4
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcCCC------CCCCCCCCchhhhchHHHhhh
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFDGK------EPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~~~------~i~~~~~p~~aVA~GAa~~a~ 342 (599)
+++.|+|-|+.+..+.+.+.+++.+... ++....-.+.+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 5678999888877776667676665321 122233456888999998763
No 140
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.31 E-value=46 Score=29.24 Aligned_cols=21 Identities=24% Similarity=0.732 Sum_probs=16.9
Q ss_pred HHHHHhcC-CCCCHHHHHHHHH
Q 007552 542 ALEWLDDN-QSAEKEDYEEKLK 562 (599)
Q Consensus 542 ~~~WL~~~-~~~t~~~~~~kl~ 562 (599)
.++||+++ ...|+++|++|..
T Consensus 91 nE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 91 NEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred hhhhhhccCCccCHHHHHHHhh
Confidence 47899988 5679999998754
No 141
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=46.66 E-value=36 Score=34.23 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=44.9
Q ss_pred ccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHHHHHHhccccCC-----------CccEEEEEEcCCCEEEEE
Q 007552 105 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-----------GEKNILVFDLGGGTFDVS 172 (599)
Q Consensus 105 ~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~-----------~~~~vlVvD~Gggt~dvs 172 (599)
.++|+|--..=-..||..=+.. -..|++.-+++-+|+-+|+.||++..- +++.-|-+=|-+|||..-
T Consensus 251 ~H~VLswt~~D~N~qk~LNrkl-lk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNAw 328 (403)
T COG2069 251 DHVVLSWTQMDVNMQKTLNRKL-LKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNAW 328 (403)
T ss_pred CceEEEeeccChHHHHHHHHHH-HHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcchh
Confidence 4777765433334454444444 446899999999999999999986542 455566666677776653
No 142
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=46.64 E-value=3.7e+02 Score=28.16 Aligned_cols=221 Identities=16% Similarity=0.138 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCc---ccEEEEeCCCCCHHHHHHHHHHHHHcCC--ceeecccchHHHHHHhccccCCCccE
Q 007552 84 ISAMILTKMKETAEAFLGKKI---KDAVVTVPAYFNDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKN 158 (599)
Q Consensus 84 v~a~~L~~l~~~a~~~~~~~~---~~~VitVPa~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~ 158 (599)
.-..-+..+.+.+-...+..+ +-+.+|+=+...-.-+--+.-|-..|+- +++-=|.--.|=|+.-.+......-.
T Consensus 81 ~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FP 160 (405)
T KOG2707|consen 81 LHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFP 160 (405)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcCCc
Confidence 344455556666555444433 3456676666666666666666555542 23334556666666555444333345
Q ss_pred EEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccC-HHHHHHHHHHHHHHHHH
Q 007552 159 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKD-KRAIGKLRREAERAKRA 237 (599)
Q Consensus 159 vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~e~~K~~ 237 (599)
++.+=+-||.+-+.+.+ .-+.+++++..-|.. =|+.||.. .+..+...... .+. .-+++|..-..
T Consensus 161 Fl~lLvSGGH~llvla~-~~~~~~llg~TvDiA-pGe~lDK~---------ar~Lgl~~~~e~~~~---~g~aie~la~~ 226 (405)
T KOG2707|consen 161 FLALLVSGGHTLLVLAN-GVGDHELLGQTVDIA-PGEALDKC---------ARRLGLLGHPEDARS---GGKAIEHLANR 226 (405)
T ss_pred eeeEeeeCCceEEEEec-cccceeeeecccccc-hHHHHHHH---------HHHhcCCCCccchhh---hhhHHHHHHhc
Confidence 66666677777776654 223455555544322 24445432 22223322211 111 11222222111
Q ss_pred ccC------------CcceEEEEecccCCcc---------ceeecCHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCccCC
Q 007552 238 LSS------------QHQVRVEIESLFDGID---------FSEPLTRARFE-ELNNDLFRKTMGPVKKAMEDAGLEKNQI 295 (599)
Q Consensus 238 Ls~------------~~~~~i~i~~l~~~~~---------~~~~itr~~fe-~~~~~~~~~i~~~i~~~l~~~~~~~~~i 295 (599)
-|. ..+.++++..+..... -.....+.+|- ++-..++.-|.+-.+.+++...+.+..+
T Consensus 227 ~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~ 306 (405)
T KOG2707|consen 227 ASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNV 306 (405)
T ss_pred cCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 111 1112222211110000 00111222332 1222344455555666666666667778
Q ss_pred CeEEEecCCCCcHHHHHHHHhHc
Q 007552 296 DEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 296 ~~ViLvGG~srip~v~~~l~~~f 318 (599)
...++.||-++..+|+..|+...
T Consensus 307 ~~lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 307 KQLVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred ceEEEcCCccchHHHHHHHHHHH
Confidence 89999999999999999999876
No 143
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=46.51 E-value=60 Score=30.42 Aligned_cols=57 Identities=16% Similarity=0.373 Sum_probs=34.9
Q ss_pred HHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 007552 508 TYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN--QSAEKEDYEEKLKEVEAVCNPIITA 574 (599)
Q Consensus 508 ~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~--~~~t~~~~~~kl~~L~~~~~~i~~r 574 (599)
+|+.+++..|.. ++++|+ .+.++.+++++++. +..+.++.-+++-.-++++..+...
T Consensus 5 efL~~L~~~L~~-------lp~~e~---~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 5 EFLNELEKYLKK-------LPEEER---EEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHc-------CCHHHH---HHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 455555555532 455544 44567777777765 2346777777777777777766643
No 144
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=45.65 E-value=56 Score=33.31 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=31.2
Q ss_pred cCCCeEEEecCCCCcHHHHHHHHhHcCC--------CCCCCCCCCchhhhchHHHhh
Q 007552 293 NQIDEIVLVGGSTRIPKVQQLLKDYFDG--------KEPNKGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 293 ~~i~~ViLvGG~srip~v~~~l~~~f~~--------~~i~~~~~p~~aVA~GAa~~a 341 (599)
-+++.|+|-||.+..|.+.+.+++.+.. .++....-.+.+.++|||..+
T Consensus 244 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 244 VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred cCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 3567888877777666666666655521 122233345688899999876
No 145
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=43.65 E-value=37 Score=33.63 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.6
Q ss_pred ccEEEEEEcCCCEEEEEEEEE
Q 007552 156 EKNILVFDLGGGTFDVSILTI 176 (599)
Q Consensus 156 ~~~vlVvD~Gggt~dvsv~~~ 176 (599)
++..++||+|+.|+|+--+.-
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ 149 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKD 149 (330)
T ss_pred CCceEEEecCCcccceEeecc
Confidence 566899999999999987753
No 146
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=42.53 E-value=91 Score=33.48 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHc
Q 007552 266 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 266 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f 318 (599)
++++-+-+++.+..++.+.+.++++.+.+|..++++|-++..-.+.-.=-+.+
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L 107 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGL 107 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHh
Confidence 35555666778888899999999999999999999998766555544333333
No 147
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.64 E-value=48 Score=25.08 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 007552 106 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 135 (599)
Q Consensus 106 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~ 135 (599)
.-.++.|+.+++.+|+.+...|..-|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 556788999999999999999999999763
No 148
>PLN02377 3-ketoacyl-CoA synthase
Probab=40.51 E-value=70 Score=35.32 Aligned_cols=54 Identities=7% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEE-ecCCCCcHHHHHHHHhHcC
Q 007552 266 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 319 (599)
Q Consensus 266 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~srip~v~~~l~~~f~ 319 (599)
++...+....-+...++++|+++++++.+||.|+. +.+....|.+-.+|.+.++
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 44445555555667889999999999999999877 4455568999999999993
No 149
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=40.15 E-value=44 Score=25.93 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=37.4
Q ss_pred ccchhhccCCCCChHHHHhhccCCcEEEe-cCCceEEEEEEeCCceeEechHHHHHHHHH
Q 007552 32 WRLIEFVFARFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILT 90 (599)
Q Consensus 32 ~~~k~llG~~~~d~~~~~~~~~~~~~~v~-~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~ 90 (599)
..++++||..++...+.+.++++.|++.. .++...+.+.. -..-...+++++..+++
T Consensus 9 ~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~--~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 9 DKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPS--YRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEET--TSTT-SSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCC--CcCCcCcccHHHHHHHH
Confidence 36789999999999999999999999987 44544555542 11235677888877765
No 150
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=38.73 E-value=77 Score=33.31 Aligned_cols=46 Identities=26% Similarity=0.199 Sum_probs=33.4
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcCCC-C--CCCCCCCchhhhchHHH
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFDGK-E--PNKGVNPDEAVAYGAAV 339 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~~~-~--i~~~~~p~~aVA~GAa~ 339 (599)
+++.|++.||-+..+.+++.|.+.+.-. + +....+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 6899999999999999999999887322 1 22223445788888753
No 151
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=36.51 E-value=92 Score=33.46 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=50.4
Q ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhH-cCCCCCCCCCCCchhh
Q 007552 255 IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY-FDGKEPNKGVNPDEAV 333 (599)
Q Consensus 255 ~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~-f~~~~i~~~~~p~~aV 333 (599)
..-.+.||..+++++..- -..+..-++-.|++++++..+|+.|+|.||++.-=-+.+.+.== +|.....+..-.-.++
T Consensus 289 ~~~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 445688999999876432 23455677888999999999999999999999987777777532 2222111111122455
Q ss_pred hchHHHhh
Q 007552 334 AYGAAVQG 341 (599)
Q Consensus 334 A~GAa~~a 341 (599)
-.||.+..
T Consensus 368 l~GA~~~L 375 (412)
T PF14574_consen 368 LAGARMAL 375 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55665543
No 152
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.93 E-value=5.5e+02 Score=29.78 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcC------------CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 007552 526 KLESDEKDKIETAVKEALEWLDDN------------QSAEKEDYEEKLKEVEAVCNPIITAVYQ 577 (599)
Q Consensus 526 ~~~~~e~~~i~~~l~e~~~WL~~~------------~~~t~~~~~~kl~~L~~~~~~i~~r~~e 577 (599)
.++..++..|.+.+.+.-.|+.+. ...+.+++.+|...|...+.-.++|+..
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~ 837 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKI 837 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 467788999999999999999874 1247789999999999888888877554
No 153
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=35.74 E-value=3.4e+02 Score=24.72 Aligned_cols=105 Identities=22% Similarity=0.310 Sum_probs=59.1
Q ss_pred EEecCCceEEEEEEeCCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHH----------------HH
Q 007552 58 IVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ----------------RQ 121 (599)
Q Consensus 58 ~v~~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~q----------------r~ 121 (599)
+++-+|+....-.+ . .. .++++++..+.+.+.+.....- .. .+.|++|...+... .+
T Consensus 13 l~d~~g~ii~~~~~-~--~~-~~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~ 85 (179)
T PF00480_consen 13 LVDLDGEIIYSESI-P--TP-TSPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKE 85 (179)
T ss_dssp EEETTSCEEEEEEE-E--HH-SSHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHH
T ss_pred EECCCCCEEEEEEE-E--CC-CCHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHH
Confidence 34555654444333 1 01 4677887777776666665542 22 55566665443222 22
Q ss_pred HHHHHHHHcCCceeecccchHHHHHHhccccCC-CccEEEEEEcCCCEEEEEEE
Q 007552 122 ATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSIL 174 (599)
Q Consensus 122 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~-~~~~vlVvD~Gggt~dvsv~ 174 (599)
.+.+. .++ ++.+.++-.|+|++....... ..+.++.+-+|.| .-.+++
T Consensus 86 ~l~~~---~~~-pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 86 ELEER---FGV-PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHH---HTS-EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred Hhhcc---cce-EEEEecCCCcceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 33332 355 457899999999877553332 4567888888876 344444
No 154
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=34.69 E-value=3.3e+02 Score=24.67 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.6
Q ss_pred EEEEEEcCCCEEEEEEEEEeCCeEEEEEec
Q 007552 158 NILVFDLGGGTFDVSILTIDNGVFEVLSTN 187 (599)
Q Consensus 158 ~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~ 187 (599)
.||-+|-|-.+|-+++++..++.++++..+
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g 30 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASG 30 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEee
Confidence 368899999999999999888777766544
No 155
>PRK07157 acetate kinase; Provisional
Probab=34.44 E-value=4.6e+02 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCcHH-HHHHHHhHc
Q 007552 294 QIDEIVLVGGSTRIPK-VQQLLKDYF 318 (599)
Q Consensus 294 ~i~~ViLvGG~srip~-v~~~l~~~f 318 (599)
.+|.|+++||-+.... |++.+.+.+
T Consensus 320 ~vDaiVFTgGIGen~~~vr~~i~~~l 345 (400)
T PRK07157 320 KIDAIVFTAGVGENSAFVRELVINKI 345 (400)
T ss_pred CCCEEEECCccccCcHHHHHHHHhhc
Confidence 5999999999988777 999999977
No 156
>PRK12440 acetate kinase; Reviewed
Probab=33.63 E-value=2.4e+02 Score=30.06 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHH-HHHHHHhHc
Q 007552 272 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK-VQQLLKDYF 318 (599)
Q Consensus 272 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~-v~~~l~~~f 318 (599)
-.+.++...|-...... ..+|.|+++||-+.... +|+.+.+.+
T Consensus 302 ~f~yri~k~Ig~~~a~l----~gvDaiVFTgGIGen~~~vr~~i~~~l 345 (397)
T PRK12440 302 VFTYRVAKYIASYLAAL----DSLDGIIFTGGIGENSLPIRREILKNL 345 (397)
T ss_pred HHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 33444444444444332 36999999999988777 999999877
No 157
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=33.30 E-value=1.2e+02 Score=30.80 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCccCCCeEEE-ecCCCCcHHHHHHHHhHc
Q 007552 276 KTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYF 318 (599)
Q Consensus 276 ~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~srip~v~~~l~~~f 318 (599)
-+...|+++|+++++++.+|+.++. +..++-.|.+-.+|.+.|
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~ 129 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRY 129 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHh
Confidence 4467788999999999999998655 477889999999999999
No 158
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=32.97 E-value=30 Score=37.40 Aligned_cols=59 Identities=29% Similarity=0.363 Sum_probs=33.7
Q ss_pred HHHHHHHHHHH-----HHcCCcee------ecccchHHHHHHhccccCC----Cc-cEEEEEEcCCCEEEEEEEE
Q 007552 117 DAQRQATKDAG-----IIAGLNVA------RIINEPTAAAIAYGLDKKG----GE-KNILVFDLGGGTFDVSILT 175 (599)
Q Consensus 117 ~~qr~~l~~Aa-----~~AGl~~~------~li~Ep~Aaal~y~~~~~~----~~-~~vlVvD~Gggt~dvsv~~ 175 (599)
...|+++++.. +.-|++.+ .+++-|.|+..+.-+-... .+ ..+|++|+||-|||+-.+.
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 45677776663 22255432 3566666654432211111 12 3489999999999996554
No 159
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=7.6e+02 Score=27.50 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=52.5
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHH-HHHHhHcCCCCCCC-CCCCchhhhch
Q 007552 259 EPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ-QLLKDYFDGKEPNK-GVNPDEAVAYG 336 (599)
Q Consensus 259 ~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~-~~l~~~f~~~~i~~-~~~p~~aVA~G 336 (599)
....-.++...++-.+++++..+-..+.+.. ..+.+.+.||....-..- +.+.+-+ ...+.. +--.|.-.|.|
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvG 328 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVG 328 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHH
Confidence 3344556666667777777655555544421 256899999998876665 5555554 334433 33347889999
Q ss_pred HHHhhhhhc
Q 007552 337 AAVQGGILS 345 (599)
Q Consensus 337 Aa~~a~~ls 345 (599)
||+++....
T Consensus 329 AAl~~~~~~ 337 (555)
T COG2192 329 AALAVKREL 337 (555)
T ss_pred HHHHHHHHh
Confidence 999987543
No 160
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=31.28 E-value=19 Score=36.78 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=49.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeec---ccchHHHHHHhcccc-CC-CccEEEEEEcCCCEEEEEEEEEeCCe
Q 007552 106 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDK-KG-GEKNILVFDLGGGTFDVSILTIDNGV 180 (599)
Q Consensus 106 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~-~~-~~~~vlVvD~Gggt~dvsv~~~~~~~ 180 (599)
-++||=-..-...+|..+..-...||==++.- --|+.-|.-..+-.. .+ ....++=+|+||||+..+++.-.+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc--
Confidence 45667666666677777766656666433321 123332222111111 11 356788999999999999986332
Q ss_pred EEEEEecCCCCCccchH
Q 007552 181 FEVLSTNGDTHLGGEDF 197 (599)
Q Consensus 181 ~~v~~~~~~~~lGG~~i 197 (599)
+..+. ...+||+-+
T Consensus 167 --v~dTa-CLdiGGRLi 180 (473)
T COG4819 167 --VSDTA-CLDIGGRLI 180 (473)
T ss_pred --cccce-eeecCcEEE
Confidence 22222 256788766
No 161
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=31.23 E-value=81 Score=31.36 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHH
Q 007552 294 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 338 (599)
Q Consensus 294 ~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa 338 (599)
.++.|+| |+|..|++.+.+++.++ ..+ .-+||.+++|.=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~-~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLP-EHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcC-CCc-EEECCHHHHHHHHH
Confidence 5677766 99999999999999984 333 45788888887554
No 162
>PLN03173 chalcone synthase; Provisional
Probab=30.37 E-value=1.8e+02 Score=31.01 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhCCCccCCCeEEEecCCC-CcHHHHHHHHhHcC
Q 007552 273 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 319 (599)
Q Consensus 273 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~f~ 319 (599)
..+=..+.++++|+++++.+.+|+.|+.+.-+. ..|.+--.|.+.++
T Consensus 102 a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 334445678999999999999999998876544 58999999999993
No 163
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=28.99 E-value=1e+02 Score=23.68 Aligned_cols=59 Identities=7% Similarity=0.125 Sum_probs=35.9
Q ss_pred ccchhhccCCCCChHHHHhhccCCcEEEecCCceEEEEEEeCCceeEechHHHHHHHHH
Q 007552 32 WRLIEFVFARFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILT 90 (599)
Q Consensus 32 ~~~k~llG~~~~d~~~~~~~~~~~~~~v~~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~ 90 (599)
..+.+++|..++...+.+.++++.|.+...+....+.|...--..-...+.+++..+++
T Consensus 9 ~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R~Di~~~~DliEei~r 67 (71)
T smart00874 9 ERINRLLGLDLSAEEIEEILKRLGFEVEVSGDDDTLEVTVPSYRFDILIEADLIEEVAR 67 (71)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCeEEecCCCCeEEEECCCCccccCcccHHHHHHHH
Confidence 46789999999988888889999988764211112333321111123455666665554
No 164
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=28.86 E-value=1.1e+02 Score=32.64 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=31.3
Q ss_pred cccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHH-HHHHhccccC
Q 007552 104 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTA-AAIAYGLDKK 153 (599)
Q Consensus 104 ~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aal~y~~~~~ 153 (599)
+.++|++-|+.-+..---.+..||.++|.+.+.-+--..| ||++||...-
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTeti 187 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTETI 187 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SSS
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCCC
Confidence 5789999998876566678899999999999888888877 5789986543
No 165
>PLN03170 chalcone synthase; Provisional
Probab=28.79 E-value=1.6e+02 Score=31.55 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCC-CcHHHHHHHHhHcC
Q 007552 271 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 319 (599)
Q Consensus 271 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~f~ 319 (599)
+...+=..+..+++|+++++++.+|+.|+++-.+. ..|.+--.|.+.++
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 33444446778999999999999999988776544 69999999999994
No 166
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=28.77 E-value=1.4e+02 Score=25.14 Aligned_cols=45 Identities=29% Similarity=0.470 Sum_probs=31.0
Q ss_pred eEEEEEEEcCC-ceEEEEEeecCCCceeEEEEecCCCCCCHHHHHHHHHHHHHH
Q 007552 437 QIEVTFEVDAN-GILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEF 489 (599)
Q Consensus 437 ~i~v~f~~d~~-g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~i~~~~~~~~~~ 489 (599)
...+.|.+|.+ |.+.|.+.+..||.... .++++++-++.+.+..+
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIR--------qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIR--------QIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEE--------EE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEE--------eCCcHHHHHHHHHHHHH
Confidence 35688999876 88999999999988543 46778877777665543
No 167
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=28.76 E-value=1.6e+02 Score=33.52 Aligned_cols=44 Identities=30% Similarity=0.617 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhcC--------CCCC---HHHHHHHHHHHHHHHHHHHHH
Q 007552 531 EKDKIETAVKEALEWLDDN--------QSAE---KEDYEEKLKEVEAVCNPIITA 574 (599)
Q Consensus 531 e~~~i~~~l~e~~~WL~~~--------~~~t---~~~~~~kl~~L~~~~~~i~~r 574 (599)
+..+....+++++.|+... .+++ .+++..+.++|.+.+.||..+
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~~ 725 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIISK 725 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccccc
Confidence 6678888899999999875 1233 388999999999999998764
No 168
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=28.58 E-value=48 Score=35.14 Aligned_cols=91 Identities=30% Similarity=0.405 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhCC---CcccEEEE-------eCCCCCHHHHHHHHHHHHHc-CC----ceeecc---cchHHHH-
Q 007552 85 SAMILTKMKETAEAFLGK---KIKDAVVT-------VPAYFNDAQRQATKDAGIIA-GL----NVARII---NEPTAAA- 145 (599)
Q Consensus 85 ~a~~L~~l~~~a~~~~~~---~~~~~Vit-------VPa~~~~~qr~~l~~Aa~~A-Gl----~~~~li---~Ep~Aaa- 145 (599)
.|.=|+.|.+.|+...-. +-.-+++- .|..-.+.--+++|+-.+.. -+ ..+.++ +|..-|.
T Consensus 119 aA~Sl~~LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWi 198 (453)
T KOG1385|consen 119 AANSLRPLLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWI 198 (453)
T ss_pred HHHhHHHHHHHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeee
Confidence 466677788888876532 12233332 23222233333334333311 12 223343 3443332
Q ss_pred -HHhccccCC--CccEEEEEEcCCCEEEEEEEE
Q 007552 146 -IAYGLDKKG--GEKNILVFDLGGGTFDVSILT 175 (599)
Q Consensus 146 -l~y~~~~~~--~~~~vlVvD~Gggt~dvsv~~ 175 (599)
+.|...... ....+.|+|+|||+|.++..-
T Consensus 199 TiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 199 TINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 233333222 256799999999999999765
No 169
>PLN02854 3-ketoacyl-CoA synthase
Probab=28.40 E-value=1.4e+02 Score=33.10 Aligned_cols=53 Identities=11% Similarity=0.277 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEE-ecCCCCcHHHHHHHHhHcC
Q 007552 267 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 319 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~srip~v~~~l~~~f~ 319 (599)
++..++.-.-+...++++|+++++++.+|+.|++ +.+....|.+-.+|.+.++
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 3333333344556778899999999999999987 3444568999999999993
No 170
>PLN03172 chalcone synthase family protein; Provisional
Probab=28.34 E-value=1.8e+02 Score=31.10 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCC-CcHHHHHHHHhHcC
Q 007552 269 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 319 (599)
Q Consensus 269 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~f~ 319 (599)
..+...+=..+.++++|+++++.+.+|+.|+++..+. .+|.+--.|.+.++
T Consensus 98 ~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 98 VVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 3334444455778999999999999999998776554 69999999999994
No 171
>PF13941 MutL: MutL protein
Probab=27.95 E-value=1.3e+02 Score=32.73 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=35.6
Q ss_pred EEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccc-hHhHHHHHHHHHHHHhhc
Q 007552 159 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE-DFDQRVMEYFIKLIKKKH 213 (599)
Q Consensus 159 vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~-~iD~~l~~~~~~~~~~~~ 213 (599)
+|++|||+.+|-++++....+..++++......-=.. |+..-+.+-+ +++.++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~-~~l~~~~ 56 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL-EQLEEQT 56 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH-HHHHHhc
Confidence 7999999999999999977777777766543332233 6665555443 3344443
No 172
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=27.52 E-value=2.9e+02 Score=30.29 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=33.5
Q ss_pred EEEEEEcCCCEEEEEEEEEeCCeEEE-EEecCCCCCccchHhHHHH
Q 007552 158 NILVFDLGGGTFDVSILTIDNGVFEV-LSTNGDTHLGGEDFDQRVM 202 (599)
Q Consensus 158 ~vlVvD~Gggt~dvsv~~~~~~~~~v-~~~~~~~~lGG~~iD~~l~ 202 (599)
+=+-+|+|.+++-+.++.+..+.+.- ..+....--||+++|....
T Consensus 165 YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 165 YGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 44679999999999999998875433 3334445579999987764
No 173
>PTZ00297 pantothenate kinase; Provisional
Probab=27.08 E-value=2.1e+02 Score=36.20 Aligned_cols=155 Identities=14% Similarity=0.229 Sum_probs=0.0
Q ss_pred EEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHc
Q 007552 159 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRAL 238 (599)
Q Consensus 159 vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 238 (599)
+|+|.+|.| +|++++.+..-...-.+| ..+||-.| .-+.+|+..|....+.|
T Consensus 1216 ~llvNIGSG---vSi~kv~~~~~~~~RvgG-t~iGGGT~------------------------~GL~~llt~~~~f~e~l 1267 (1452)
T PTZ00297 1216 CLLVNIGSG---ISIIKCLGPDGSHVRVGG-SPIGGATF------------------------WGLVRTMTNVTSWEEVM 1267 (1452)
T ss_pred eEEEEccCc---eEEEEEecCCCcEEEecC-cccccHhH------------------------HHHHHHhcCCCCHHHHH
Q ss_pred --------cCCcceEEEEecccC----Cc--cceeecCHHHHHHHH----------------------------------
Q 007552 239 --------SSQHQVRVEIESLFD----GI--DFSEPLTRARFEELN---------------------------------- 270 (599)
Q Consensus 239 --------s~~~~~~i~i~~l~~----~~--~~~~~itr~~fe~~~---------------------------------- 270 (599)
..+...+..+.+++. +. .+.-..+-.-|=.+.
T Consensus 1268 ~~~~la~~Gd~~~vDllVgDIyg~~~~~~~~~L~~~~iASsfGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1347 (1452)
T PTZ00297 1268 EIMRLDGPGDNKNVDLLVGDIYGYNAKDLPAMLSVDTVASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALKSP 1347 (1452)
T ss_pred HHHHHhhCCCccccceEEeeccCCCcccccCCCCcceeeeccCccccccccccccccccccccccccccccccccccccc
Q ss_pred -----------------HHHHHHHHHHHHHHHHHh---CCCccCCCeEEEecC-CCCcHHHHHHHHhHc-----CCCCCC
Q 007552 271 -----------------NDLFRKTMGPVKKAMEDA---GLEKNQIDEIVLVGG-STRIPKVQQLLKDYF-----DGKEPN 324 (599)
Q Consensus 271 -----------------~~~~~~i~~~i~~~l~~~---~~~~~~i~~ViLvGG-~srip~v~~~l~~~f-----~~~~i~ 324 (599)
+++...++.+|-..+.+. .-...+++.|+++|+ ...-|...+.|...+ ++.+..
T Consensus 1348 ~~~~~~~~~~~~~~~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~ 1427 (1452)
T PTZ00297 1348 TVISELPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAH 1427 (1452)
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEE
Q ss_pred CCCCCchhhhchHHHhh
Q 007552 325 KGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 325 ~~~~p~~aVA~GAa~~a 341 (599)
..-+....-|+||++..
T Consensus 1428 fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1428 FLEHDGYLGALGCATLD 1444 (1452)
T ss_pred EecCccccHHhhhhhcC
No 174
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=26.73 E-value=2.8e+02 Score=27.50 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHH
Q 007552 534 KIETAVKEALEWLDDNQ-SAEKED 556 (599)
Q Consensus 534 ~i~~~l~e~~~WL~~~~-~~t~~~ 556 (599)
.++.+.+++=.||.+|. ..+.++
T Consensus 144 PmKel~~kyP~wL~~n~~~l~~ed 167 (248)
T PF04614_consen 144 PMKELRDKYPEWLEENKSKLSAED 167 (248)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-HHH
T ss_pred hHHHHHHHhHHHHHhCcCcCCHHH
Confidence 46666666666776662 334444
No 175
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=26.38 E-value=4e+02 Score=27.50 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCceeecccchHHHHHHhccccCC-----------CccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCcc-chHh
Q 007552 131 GLNVARIINEPTAAAIAYGLDKKG-----------GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG-EDFD 198 (599)
Q Consensus 131 Gl~~~~li~Ep~Aaal~y~~~~~~-----------~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG-~~iD 198 (599)
|++.+.+||+=+|.|+....-... .....+|+-.|.|==-..++...++..-+-+..|+..+.- .+.+
T Consensus 91 g~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e 170 (316)
T PF02685_consen 91 GIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDGDGYYVLPSEGGHVDFAPRTDEE 170 (316)
T ss_dssp T-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEETTEEEEEEE-GGGSB---SSHHH
T ss_pred CCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecCCceEeCCCccccccCCCCCHHH
Q ss_pred HHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHccCCcceEEEEecccCCccceeecCHHHH---HHHHHHHHH
Q 007552 199 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF---EELNNDLFR 275 (599)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~~~~~~itr~~f---e~~~~~~~~ 275 (599)
..|.+++.+++ ......---+-+-+.+|.+.....+ .......-.-.|++.-. ..+|...++
T Consensus 171 ~~l~~~l~~~~-~~vs~E~vlSG~GL~~ly~~l~~~~--------------~~~~~~~~~~~I~~~A~~~~d~~a~~al~ 235 (316)
T PF02685_consen 171 AELLRFLRRRY-GRVSVERVLSGRGLENLYRFLAGER--------------GAEPPLLSAAEISAAALEGGDPLAREALD 235 (316)
T ss_dssp HHHHHHHHHHC-TS-BHHHCSSHHHHHHHHHHHHCCT--------------T--S----HHHHHHHHHCT--HHHHHHHH
T ss_pred HHHHHHHHHhc-CCceeEeecchhhHHHHHHHHHhcc--------------CCCCCCCCHHHHHHHHHcCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHhCCCccCCCeEEEecCCC-CcHHHHH--HHHhHc----------CCCCCCCCCCCchhhhchHHHhhh
Q 007552 276 KTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQ--LLKDYF----------DGKEPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 276 ~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~--~l~~~f----------~~~~i~~~~~p~~aVA~GAa~~a~ 342 (599)
.+...+-+.....-+...--..|+|.||-+ +++-+-+ .+.+.| ...++....|++ +.-.||+.++.
T Consensus 236 ~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~-~gL~Gaa~~a~ 314 (316)
T PF02685_consen 236 LFARILGRVAGDLALTFLARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPD-AGLLGAAAYAR 314 (316)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCC-HHHHHHHHHHh
Q ss_pred h
Q 007552 343 I 343 (599)
Q Consensus 343 ~ 343 (599)
.
T Consensus 315 ~ 315 (316)
T PF02685_consen 315 Q 315 (316)
T ss_dssp H
T ss_pred c
No 176
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=26.27 E-value=2e+02 Score=30.77 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCC-CcHHHHHHHHhHcC
Q 007552 272 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 319 (599)
Q Consensus 272 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~f~ 319 (599)
-++.++...|-...... ...+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 304 ~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 304 VFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33444444444443332 14699999999999 99999999999873
No 177
>PLN02902 pantothenate kinase
Probab=26.23 E-value=2.5e+02 Score=33.00 Aligned_cols=50 Identities=12% Similarity=-0.024 Sum_probs=31.2
Q ss_pred cCCCeEEEecCCCCc-----HHHHHHHHhHc--CCCCCCCCCCCchhhhchHHHhhhh
Q 007552 293 NQIDEIVLVGGSTRI-----PKVQQLLKDYF--DGKEPNKGVNPDEAVAYGAAVQGGI 343 (599)
Q Consensus 293 ~~i~~ViLvGG~sri-----p~v~~~l~~~f--~~~~i~~~~~p~~aVA~GAa~~a~~ 343 (599)
.+++.|+++|.+-|- ..|...+. ++ +..+....-+--..-|+||.+....
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~~ 401 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYEK 401 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCCc
Confidence 578899999988553 33433443 33 2234444456678889999876643
No 178
>PLN03168 chalcone synthase; Provisional
Probab=26.10 E-value=2.1e+02 Score=30.56 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCC-CCcHHHHHHHHhHcC
Q 007552 269 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFD 319 (599)
Q Consensus 269 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~f~ 319 (599)
..+...+=..+..+++|+++++++.+|+.|+++-.+ -.+|.+--.|.+.++
T Consensus 97 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 97 VVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 333444444678899999999999999999876332 358999999999993
No 179
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=25.94 E-value=97 Score=26.64 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCCccCCCeEEEecCCCCc--HHHHHHHHhHcC
Q 007552 275 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI--PKVQQLLKDYFD 319 (599)
Q Consensus 275 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri--p~v~~~l~~~f~ 319 (599)
......++++|+++++++.+|+.|..-|-++.. +.=.+.+.+.|+
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 445677999999999999999999998877665 333456778884
No 180
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=25.92 E-value=2.2e+02 Score=25.77 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=12.9
Q ss_pred HHHHHHHHHHH-HHhhcCCCCCCCC
Q 007552 564 VEAVCNPIITA-VYQRSGGAPGAGT 587 (599)
Q Consensus 564 L~~~~~~i~~r-~~e~~~~~~~~~~ 587 (599)
+.++.+.+.+. .+. +|.-.|.|+
T Consensus 89 w~el~~d~~h~g~Y~-sGE~~g~G~ 112 (146)
T PF07295_consen 89 WAELAQDLEHHGVYH-SGEVVGPGT 112 (146)
T ss_pred HHHHHHHHHhcCCee-cCcEecCce
Confidence 44555555444 344 677777774
No 181
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=25.87 E-value=7e+02 Score=28.51 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCc--HHHHH-HHHhHcCCC----------CCCCCCCCchhhhc
Q 007552 269 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI--PKVQQ-LLKDYFDGK----------EPNKGVNPDEAVAY 335 (599)
Q Consensus 269 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri--p~v~~-~l~~~f~~~----------~i~~~~~p~~aVA~ 335 (599)
++...++.+...+-..+...-.....++.|+|.||-+.- +++.+ .+.+.|..+ ++... --+.+.-.
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i-~~~~~~l~ 322 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLI-TAEYPAFL 322 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEE-eCCChhHH
Confidence 344555555555555554432222346789998998733 55553 566666221 22222 23456667
Q ss_pred hHHHhhh
Q 007552 336 GAAVQGG 342 (599)
Q Consensus 336 GAa~~a~ 342 (599)
|||.++.
T Consensus 323 Gaa~~~~ 329 (638)
T PRK14101 323 GVSAILA 329 (638)
T ss_pred HHHHHHH
Confidence 8855443
No 182
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=25.81 E-value=1e+02 Score=33.05 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=39.1
Q ss_pred cccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHH-HHHHhccccC
Q 007552 104 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTA-AAIAYGLDKK 153 (599)
Q Consensus 104 ~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aal~y~~~~~ 153 (599)
+.++|++.|+. +..---.+.-||.++|.+.+.-+--..| ||++||...-
T Consensus 151 V~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTetI 200 (425)
T PRK00877 151 VKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTESI 200 (425)
T ss_pred CCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCC
Confidence 67899999985 4444567888999999999988888888 5789987543
No 183
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=25.63 E-value=4e+02 Score=28.44 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCC-cHHHHHHHHhHc
Q 007552 273 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTR-IPKVQQLLKDYF 318 (599)
Q Consensus 273 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr-ip~v~~~l~~~f 318 (599)
++.++...|-....... ..+|.|+++||-+. .+.+++.+.+.+
T Consensus 302 ~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 302 FAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred HHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhc
Confidence 34444444444443321 47999999999997 578999998866
No 184
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=25.57 E-value=2.7e+02 Score=30.86 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=44.7
Q ss_pred HHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007552 510 VYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN----QSAEKEDYEEKLKEVEAVCNPIITAVYQR 578 (599)
Q Consensus 510 i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~----~~~t~~~~~~kl~~L~~~~~~i~~r~~e~ 578 (599)
|.++++.+..+. =...++++++.+|++.|.++..-+++. ......++.++.++|.+-+....++..|.
T Consensus 582 i~~f~qF~WRPR-Pps~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElvekrRqlm~~f~~yR~~~~~~ 653 (698)
T KOG2314|consen 582 IDRFKQFLWRPR-PPSLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVEKRRQLMEQFTEYREKIIEE 653 (698)
T ss_pred HHHHHhhccCCC-CCcccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554432 335688999999999999999988765 22234556667777777666666554443
No 185
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.04 E-value=7.2e+02 Score=26.21 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=11.6
Q ss_pred chHhHHHHHHHHHHH
Q 007552 195 EDFDQRVMEYFIKLI 209 (599)
Q Consensus 195 ~~iD~~l~~~~~~~~ 209 (599)
+.+|+.|+..+.+++
T Consensus 13 D~iD~~iv~Ll~~R~ 27 (374)
T PRK11199 13 DEVDKQLLELLAKRL 27 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 468889988887664
No 186
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=24.66 E-value=81 Score=33.75 Aligned_cols=30 Identities=27% Similarity=0.669 Sum_probs=24.4
Q ss_pred CccEEEEEEcCCCEEEEEEEEEe-CCeEEEE
Q 007552 155 GEKNILVFDLGGGTFDVSILTID-NGVFEVL 184 (599)
Q Consensus 155 ~~~~vlVvD~Gggt~dvsv~~~~-~~~~~v~ 184 (599)
....+|++|+||..+-++.+++. ++.+++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 46789999999999999999998 4454443
No 187
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.62 E-value=5.6e+02 Score=28.80 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC-----
Q 007552 475 SQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN----- 549 (599)
Q Consensus 475 ~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~----- 549 (599)
|.++.+++.+..+++.+.=..+.....-++++++|--++...-.. .+-++.+..+....++++..=+...
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~-----~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~ 236 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK-----DIKNPLELQKIKEEFDKLKKEGKADKQKIK 236 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544443322222222222366777776665544322 3455665555555555444444322
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 007552 550 -----QSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGA 585 (599)
Q Consensus 550 -----~~~t~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~~ 585 (599)
-....+.++..+++|++.-..=++|+.+.++.-+|+
T Consensus 237 ~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~ 277 (555)
T TIGR03545 237 SAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGD 277 (555)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCccc
Confidence 123677888888888888888889999988866554
No 188
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=24.37 E-value=4e+02 Score=21.80 Aligned_cols=66 Identities=15% Similarity=0.352 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHH--hhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC
Q 007552 477 EEIDRMVREAEEFAE--EDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN 549 (599)
Q Consensus 477 ~~i~~~~~~~~~~~~--~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~ 549 (599)
++++.++..++.+.. .+.......+++..+++.+..+++.+.+- ...-+++.......+++|+.++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA-------ADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHC
Confidence 345555554444421 23334455566777777777777777651 2234455666677777777666
No 189
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=24.09 E-value=4.7e+02 Score=28.67 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=22.9
Q ss_pred CccEEEEEEcCCCEEEEEEEEEeCCe
Q 007552 155 GEKNILVFDLGGGTFDVSILTIDNGV 180 (599)
Q Consensus 155 ~~~~vlVvD~Gggt~dvsv~~~~~~~ 180 (599)
....++.+|+||..+-|..+.+.++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 45679999999999999999998773
No 190
>PRK14878 UGMP family protein; Provisional
Probab=24.09 E-value=1.1e+02 Score=31.67 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHH
Q 007552 268 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQ 312 (599)
Q Consensus 268 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~ 312 (599)
...+...+.+...++++|++++++..+||.|.+.-|-...+.++-
T Consensus 39 ~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrv 83 (323)
T PRK14878 39 EAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRV 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHH
Confidence 344556677888999999999999999999999988877777763
No 191
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.78 E-value=3.5e+02 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC
Q 007552 504 NSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN 549 (599)
Q Consensus 504 N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~ 549 (599)
+.||.++..+-+.|-..+-++ ..++++...+=.||.+|
T Consensus 142 g~le~~m~~iMqqllSKEILy--------eplKEl~~~YPkwLeen 179 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSKEILY--------EPLKELGANYPKWLEEN 179 (267)
T ss_pred ccHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHhhHHHHhc
Confidence 667888777766664432122 25778888888999888
No 192
>PRK05443 polyphosphate kinase; Provisional
Probab=23.47 E-value=9e+02 Score=28.01 Aligned_cols=48 Identities=25% Similarity=0.312 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCCceee
Q 007552 86 AMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVAR 136 (599)
Q Consensus 86 a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~ 136 (599)
+.+++.|.+.|+. |..| .+++-..|.|++..-.......+.||.+++.
T Consensus 380 s~iv~aL~~Aa~~--Gk~V-~vlve~karfde~~n~~~~~~L~~aGv~V~y 427 (691)
T PRK05443 380 SPIVDALIEAAEN--GKQV-TVLVELKARFDEEANIRWARRLEEAGVHVVY 427 (691)
T ss_pred HHHHHHHHHHHHc--CCEE-EEEEccCccccHHHHHHHHHHHHHcCCEEEE
Confidence 5666667666664 4333 4555555777776666666677778887754
No 193
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=23.43 E-value=1.7e+02 Score=31.06 Aligned_cols=72 Identities=24% Similarity=0.321 Sum_probs=49.8
Q ss_pred cccEEEEeCCCCCHHHHHHHHHHHHHcCCceeecccchHH-HHHHhccccCCC------cc------------EEEEEEc
Q 007552 104 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTA-AAIAYGLDKKGG------EK------------NILVFDL 164 (599)
Q Consensus 104 ~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aal~y~~~~~~~------~~------------~vlVvD~ 164 (599)
+.++|++.|+.=+..--..+.-||.++|.+.+..+--.-| ||++||...-.+ +. ..+-+|+
T Consensus 123 V~~Iv~~TPp~~~g~i~p~iL~aa~~~Gv~eiy~vGGaQAIAAlAyGTesi~~VDkIvGPGN~yV~~AK~~v~g~V~ID~ 202 (390)
T cd06572 123 VKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTETIPKVDKIVGPGNIYVTAAKRLVSGDVGIDM 202 (390)
T ss_pred CCeEEEEeCcCCCCCCCHHHHHHHHHcCCcEEeccCCHHHHHHHHcCCcCCCCCCEeeCCchHHHHHHHHHhcCCcCccC
Confidence 6789999998533233466788999999999888888877 578998654321 11 0223777
Q ss_pred CCCEEEEEEEE
Q 007552 165 GGGTFDVSILT 175 (599)
Q Consensus 165 Gggt~dvsv~~ 175 (599)
=+|-+++.|+-
T Consensus 203 ~AGPSEvlIiA 213 (390)
T cd06572 203 PAGPSEVLVIA 213 (390)
T ss_pred CCCCceEEEEe
Confidence 77777777664
No 194
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=23.17 E-value=91 Score=33.73 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCC---cccEEEEeCCCC---CHHHHHHHHHHHHH-----cCCc----eeecccchHHHH
Q 007552 81 PEEISAMILTKMKETAEAFLGKK---IKDAVVTVPAYF---NDAQRQATKDAGII-----AGLN----VARIINEPTAAA 145 (599)
Q Consensus 81 ~e~v~a~~L~~l~~~a~~~~~~~---~~~~VitVPa~~---~~~qr~~l~~Aa~~-----AGl~----~~~li~Ep~Aaa 145 (599)
|+. ++..|..|.+.|.+.+... ..-+.|-..|.. +..++.++.++++. .++. .+++|+-..=+.
T Consensus 62 ~~~-~~~~l~~ll~~a~~~ip~~~~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~ 140 (434)
T PF01150_consen 62 PEK-AAESLQPLLDFAKSVIPKSQHSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGI 140 (434)
T ss_dssp THH-HHHHHHHHHHHHHHHHHHHHSCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHH
T ss_pred hHH-HHHHHHHHHHHHHhhCCHHHhCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhH
Confidence 444 4667777777777665321 112333322221 24466666666553 2442 256776544443
Q ss_pred -----HHhccccCC-------CccEEEEEEcCCCEEEEEEEE
Q 007552 146 -----IAYGLDKKG-------GEKNILVFDLGGGTFDVSILT 175 (599)
Q Consensus 146 -----l~y~~~~~~-------~~~~vlVvD~Gggt~dvsv~~ 175 (599)
+.|....-. ...++.++||||++|.|+..-
T Consensus 141 y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~ 182 (434)
T PF01150_consen 141 YGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEP 182 (434)
T ss_dssp HHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEE
T ss_pred hHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeecc
Confidence 344433322 246899999999999999544
No 195
>PRK10972 Z-ring-associated protein; Provisional
Probab=23.16 E-value=4.8e+02 Score=22.35 Aligned_cols=48 Identities=8% Similarity=0.164 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 007552 527 LESDEKDKIETAVKEALEWLDDN--QSAEKEDYEEKLKEVEAVCNPIITA 574 (599)
Q Consensus 527 ~~~~e~~~i~~~l~e~~~WL~~~--~~~t~~~~~~kl~~L~~~~~~i~~r 574 (599)
+...|+-.+..+|+=+-++|... ......++.+++..|...++..+..
T Consensus 47 v~~~EriavmaALNl~~ELl~~k~~~~~~~~~~~~rI~~L~~~ld~AL~~ 96 (109)
T PRK10972 47 VTNTEQLVFIAALNICYELAQEKAKTRDYAANMEQRIRMLQQTIEQALLE 96 (109)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45568889999999999999875 2346688999999999999988764
No 196
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=23.16 E-value=1.3e+02 Score=31.08 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHH
Q 007552 269 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ 311 (599)
Q Consensus 269 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~ 311 (599)
..+...+.+...|+++|++++++..+||.|.+.-|-+..++++
T Consensus 41 ~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 41 AAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 4455667788889999999999999999999999887777776
No 197
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=23.11 E-value=2.4e+02 Score=28.22 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=33.4
Q ss_pred CccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHH
Q 007552 155 GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 200 (599)
Q Consensus 155 ~~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~ 200 (599)
+...++++|+|..+.-+.+.+.....+.+.......--.|.-+|-.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di~ 67 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDFI 67 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeHH
Confidence 4668899999999999888876655666665555555667766633
No 198
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=1.9e+02 Score=30.14 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHH
Q 007552 267 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQL 313 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~ 313 (599)
|...+...+.+..+|+++|++++++..+||.|-.+=|-+.++.+.--
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG 90 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVG 90 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHH
Confidence 45667788999999999999999999999999999999999988543
No 199
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=22.30 E-value=1.3e+02 Score=30.75 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHH
Q 007552 267 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL 314 (599)
Q Consensus 267 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l 314 (599)
+...+...+.+...|+++|++++++..+|+.|.+.-|-+..+.++--+
T Consensus 42 ~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~ 89 (305)
T TIGR00329 42 EEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGA 89 (305)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHH
Confidence 334556778888999999999999999999999999999999987444
No 200
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=22.23 E-value=3.5e+02 Score=23.31 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=40.6
Q ss_pred EEEecCCceEEEEEEeCCceeEechHHHHHHHHHHHHHHHHHHhCCCcccEEEEeCCCCCHHHHHHHHHHHHHcCC
Q 007552 57 KIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGL 132 (599)
Q Consensus 57 ~~v~~~g~~~~~v~~~~g~~~~~s~e~v~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl 132 (599)
+++...|+..++|.+ .... + .....++..|.+.-...-+....-+.|+||+.-+-..-..+.+..+.+|.
T Consensus 45 ~~v~~sGnsTiRv~~-~~~~----~-~~~~~v~~~l~~lG~~~E~~~~~~lav~VP~~~~~~~i~~~L~~~~e~g~ 114 (117)
T PF14085_consen 45 KVVESSGNSTIRVIF-DDPG----P-DDIEAVREELEALGCTVEGFSERMLAVDVPPSVDFDAIKDYLDRGEEQGW 114 (117)
T ss_pred EEEecCCCEEEEEEE-cCCc----c-hhHHHHHHHHHHcCCeEEccCCCEEEEEECCCCCHHHHHHHHHhhhhcCc
Confidence 334467777777766 2211 1 23333333333221111112235688999999999998888888777764
No 201
>PLN02939 transferase, transferring glycosyl groups
Probab=22.14 E-value=5.1e+02 Score=31.13 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHh
Q 007552 474 LSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLD 547 (599)
Q Consensus 474 l~~~~i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~ 547 (599)
+-.++++.++.++....+.|+.......-+.-|++++-++..++.....-...+++-+.+.+.+.++.++..|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 44567888888888888888888888877888888888887776442212223344444445555555555554
No 202
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=21.87 E-value=3e+02 Score=28.03 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=32.3
Q ss_pred ccEEEEEEcCCCEEEEEEEEEeCCeEEEEEecCCCCCccchHhHHHHHHHH
Q 007552 156 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 206 (599)
Q Consensus 156 ~~~vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~iD~~l~~~~~ 206 (599)
..+++-+|+|+.++.++++......+..........-....+-+.|.+.+.
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~ 55 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVA 55 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHH
Confidence 457899999999999999988777544443333222232344444444433
No 203
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=21.68 E-value=1.6e+02 Score=30.90 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHH
Q 007552 268 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL 314 (599)
Q Consensus 268 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l 314 (599)
...+...+.+..+|+++|++++++..+|+.|-.+-|-+..+.++=-+
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~ 90 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGA 90 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHH
Confidence 45566788899999999999999999999999999999888886444
No 204
>PRK00865 glutamate racemase; Provisional
Probab=21.60 E-value=2e+02 Score=28.77 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=32.4
Q ss_pred cCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHh
Q 007552 293 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 340 (599)
Q Consensus 293 ~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~ 340 (599)
..++.|+| |++.+|++.+.+++.++ ..+ .-+||.+++|.-+.-+
T Consensus 176 ~g~d~iIL--GCTh~p~l~~~i~~~~~-~~v-~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 176 AGIDTLVL--GCTHYPLLKPEIQQVLG-EGV-TLIDSGEAIARRVARL 219 (261)
T ss_pred CCCCEEEE--CCcCHHHHHHHHHHHcC-CCC-EEECCHHHHHHHHHHH
Confidence 35677766 89999999999999984 222 3468888887666543
No 205
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=21.57 E-value=3.1e+02 Score=21.41 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=32.8
Q ss_pred EEEEEEEcCCceEEEEEeecCCCceeEEEEec-C-CCCCCHHHHHHHHHHHH
Q 007552 438 IEVTFEVDANGILNVKAEDKGTGKSEKITITN-D-KGRLSQEEIDRMVREAE 487 (599)
Q Consensus 438 i~v~f~~d~~g~l~v~~~~~~~~~~~~~~i~~-~-~~~l~~~~i~~~~~~~~ 487 (599)
....++++.+|.|+|...+..+|... ++++. + ..-.|..+|.+++.+++
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~-l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVE-LTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEE-EEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 56778999999999999998887752 22322 1 13345667777765543
No 206
>PLN02914 hexokinase
Probab=21.23 E-value=2.7e+02 Score=30.69 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.5
Q ss_pred CccEEEEEEcCCCEEEEEEEEEeC
Q 007552 155 GEKNILVFDLGGGTFDVSILTIDN 178 (599)
Q Consensus 155 ~~~~vlVvD~Gggt~dvsv~~~~~ 178 (599)
....+|.+|+||.++-|..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 456799999999999999999976
No 207
>PLN02192 3-ketoacyl-CoA synthase
Probab=21.02 E-value=2.6e+02 Score=31.00 Aligned_cols=54 Identities=7% Similarity=0.220 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEEEec-CCCCcHHHHHHHHhHcC
Q 007552 266 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVG-GSTRIPKVQQLLKDYFD 319 (599)
Q Consensus 266 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvG-G~srip~v~~~l~~~f~ 319 (599)
+++..+....-+...++++|+++++++.+||.|+... +....|.+-.+|.+.++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 3444444445566788899999999999999887653 22458999999999993
No 208
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=20.91 E-value=2.3e+02 Score=29.62 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=35.0
Q ss_pred cCCCeEEEecCCCCc-HHHHHHHH---hHc--CCCCCCCCCCCchhhhchHHHhh
Q 007552 293 NQIDEIVLVGGSTRI-PKVQQLLK---DYF--DGKEPNKGVNPDEAVAYGAAVQG 341 (599)
Q Consensus 293 ~~i~~ViLvGG~sri-p~v~~~l~---~~f--~~~~i~~~~~p~~aVA~GAa~~a 341 (599)
..++.|+++|+.-+. |...+.|. +++ +..+.....+...+-|.||.+..
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 568899999999875 77788888 555 23445556688999999998753
No 209
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=20.83 E-value=1e+02 Score=27.71 Aligned_cols=61 Identities=25% Similarity=0.429 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCcHHHHHHHHhHcCCCCCCCCCCCchhhhchHHHhhh
Q 007552 272 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 342 (599)
Q Consensus 272 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f~~~~i~~~~~p~~aVA~GAa~~a~ 342 (599)
.+.+++.+-..+.|++.+...++|+ ++-|=|+--+|++-+.+.+. -+.|-.|+.||++.+.
T Consensus 13 ~i~~~L~~ga~~~l~~~g~~~~~i~-v~~VPGa~EiP~a~~~l~~~---------~~~DavI~LG~VIrG~ 73 (138)
T TIGR00114 13 DITDMLLKGAIDALKRLGAEVDNID-VIWVPGAFELPLAVKKLAET---------GKYDAVIALGCVIRGG 73 (138)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceE-EEECCcHHHHHHHHHHHHhc---------CCCCEEEEEeeEEeCC
Confidence 4555666666677777776655555 66799999999998877543 1357788888887764
No 210
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=20.81 E-value=71 Score=25.02 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 007552 527 LESDEKDKIETAVKEALEWL 546 (599)
Q Consensus 527 ~~~~e~~~i~~~l~e~~~WL 546 (599)
++.+++..+..+++.+.+=|
T Consensus 3 Vt~~EkeQLS~AID~mnEGL 22 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRMNEGL 22 (84)
T ss_pred CchHHHHHHHHHHHHHHhhH
Confidence 44556666666666554443
No 211
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=20.56 E-value=5.8e+02 Score=22.96 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=23.6
Q ss_pred EEEEEcCCCEEEEEEEEEeCCeEEEEEecC
Q 007552 159 ILVFDLGGGTFDVSILTIDNGVFEVLSTNG 188 (599)
Q Consensus 159 vlVvD~Gggt~dvsv~~~~~~~~~v~~~~~ 188 (599)
||-+|-|-.+|-.++++..++.++.+.++.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~ 30 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGT 30 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCe
Confidence 577999999999999999888887776644
No 212
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.42 E-value=1.1e+02 Score=32.39 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCCeEEEecCCCCc
Q 007552 270 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI 307 (599)
Q Consensus 270 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri 307 (599)
++.....+...++++|+++++++.+|+.+++-+++.++
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~ 303 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM 303 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH
Confidence 34556667788999999999999999999999998774
No 213
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.23 E-value=1.4e+02 Score=31.23 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007552 538 AVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQR 578 (599)
Q Consensus 538 ~l~e~~~WL~~~~~~t~~~~~~kl~~L~~~~~~i~~r~~e~ 578 (599)
.|+++|+||.+++. +++.+.+++.+-++.+-|+.-++.|+
T Consensus 9 ~LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~FNeF 48 (379)
T PF11593_consen 9 KLEELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQFNEF 48 (379)
T ss_pred cHHHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHHHHH
Confidence 35667777765544 67777777777777777766666555
No 214
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=20.10 E-value=9.2e+02 Score=24.48 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHhhccHHHHHHHHHHHhchhhhhhccCCHHHHHHHHHHHHHHHHHHhcC
Q 007552 498 EKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN 549 (599)
Q Consensus 498 ~~~~a~N~LE~~i~~~~~~l~~~~~~~~~~~~~e~~~i~~~l~e~~~WL~~~ 549 (599)
++.-..-.|++.+-++|..-.--++++.|.++.|.-.+...|.++..-|...
T Consensus 72 ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~FlreAL~rLrqe 123 (324)
T PF12126_consen 72 EMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLREALERLRQE 123 (324)
T ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhh
Confidence 3334455678888888754333335788999999999999999988888654
No 215
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=20.07 E-value=2.6e+02 Score=29.99 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.9
Q ss_pred CCCeEEEecCCC-CcHHHHHHHHhHcC
Q 007552 294 QIDEIVLVGGST-RIPKVQQLLKDYFD 319 (599)
Q Consensus 294 ~i~~ViLvGG~s-rip~v~~~l~~~f~ 319 (599)
.+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 327 ~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 327 NLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred CCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 599999999999 99999999999873
No 216
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.07 E-value=2.2e+02 Score=24.09 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCe--EEEecCCCCcHHHHHHHHhHcC
Q 007552 271 NDLFRKTMGPVKKAMEDAGLEKNQIDE--IVLVGGSTRIPKVQQLLKDYFD 319 (599)
Q Consensus 271 ~~~~~~i~~~i~~~l~~~~~~~~~i~~--ViLvGG~srip~v~~~l~~~f~ 319 (599)
......+.+-|+.+|+.+|.+..+|-. |+|+.-....+.+.+...++|+
T Consensus 32 ~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 32 EAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 344556666777888888888777755 4667655788889899999995
Done!