BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007553
(599 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 194/383 (50%), Gaps = 8/383 (2%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
G S L+ LD+S N+L+G I + +L LN+S N G IP LK L L L
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 274
Query: 101 GNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-S 158
NK G IP + G LT LDLS N G +P G+ L SL L +NN +G +P
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEV-GXXXXXXXXXXXXXXXTGPIPSTIGF--LNLLD 215
TL + L L L++N G LP+ + +GPI + N L
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 216 ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGP 275
EL L +N G IPPT+ N + L SL LS N LSG +P +G+L L L L N L G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 276 IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLR 335
IP + Y+ L +L L +N L IP L NC+ L +++++N L+G IP IG L +L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 336 QLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPV 395
L LS+N +G IP++LG ++ +D++ N +G IP ++F+ G K + N + + V
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIAANFIAGKRYV 573
Query: 396 ISENAPPPQTQHFKGNKGKNQKI 418
+N + H GN + Q I
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGI 596
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/393 (33%), Positives = 188/393 (47%), Gaps = 50/393 (12%)
Query: 32 LSGRIPSETGALSR-LKVLDLSYNRLTGTIPSEIGSLR-DLLELNLSYNILNGSI-PLEF 88
SG +P +T R LKVLDLS+N +G +P + +L LL L+LS N +G I P
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 89 GNLKD-LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147
N K+ L +L LQ N G IP ++ N + L L LS N LSG +P +G+L L L L
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPST 207
N L G IP L ++ L TL L +N+L G +P + TG IP
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV----------- 256
IG L L L+LS+N G IP +G+ L LDL++N +G +P +
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Query: 257 ---------------------GNLKYLDSLSLDRNNLI--------------GPIPPTIG 281
GNL + ++ N + G PT
Sbjct: 567 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 282 YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSH 341
++ L++ YN L+ IP E+ + L L + HN +SGSIP E+G+L L LDLS
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 342 NFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPK 374
N ++G IP + + ++E+D+S NNLSG IP+
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 13/304 (4%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGN 90
+LSG IPS G+LS+L+ L L N L G IP E+ ++ L L L +N L G IP N
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
+L + L N+L G IP IG L NL L LS N SG +P E+G+ ++L+ L L+ N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 151 NLTGPIPSTLY-HLNQLSTLYLAYNNLV----GPLPKEVGXXXXXXXXXXXXXXXTGPIP 205
G IP+ ++ +++ ++A V + KE G
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-------HGAGNLLEFQGIRS 598
Query: 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL 265
+ L+ + ++ G PT N + LD+S N LSG +P+E+G++ YL L
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 266 SLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
+L N++ G IP +G L L L+L N+L+ IP + + L + +++N+LSG IP
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Query: 326 SEIG 329
E+G
Sbjct: 719 -EMG 721
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 33/320 (10%)
Query: 32 LSGRIPSE-TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FG 89
+G IP +GA L LDLS N G +P GS L L LS N +G +P++
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 90 NLKDLYDLRLQGNKLDGLIPSSIGNLT-NLTHLDLSLNQLSGR-LPQEVGNLKN-LVSLF 146
++ L L L N+ G +P S+ NL+ +L LDLS N SG LP N KN L L+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPS 206
L NN TG IP TL + ++L +L+L++N L +G IPS
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYL------------------------SGTIPS 433
Query: 207 TIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
++G L+ L +L+L N L+G IP + + L +L L N L+G +P + N L+ +S
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 267 LDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS 326
L N L G IP IG L NL L L N + +IP EL +C L L +N N +G+IP+
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 327 EIGNLIHLRQLDLSHNFING 346
+ + ++ NFI G
Sbjct: 554 A----MFKQSGKIAANFIAG 569
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 172/366 (46%), Gaps = 22/366 (6%)
Query: 43 LSRLKVLDLSYNRLTGT------IPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96
L+ L+VLDLS N ++G + G L+ L +S N ++G + + +L
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDV--DVSRCVNLEF 201
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L + N IP +G+ + L HLD+S N+LSG + + L L + +N GPI
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 157 PSTLYHLNQLSTLYLAYNNLVGPLPKEV-GXXXXXXXXXXXXXXXTGPIPSTIGFLNLLD 215
P L L L LA N G +P + G G +P G +LL+
Sbjct: 261 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 216 ELRLSHNRLDGPIP-PTIGNLTYLTSLDLSSNQLSGLLPREVGNLKY-LDSLSLDRNNLI 273
L LS N G +P T+ + L LDLS N+ SG LP + NL L +L L NN
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 274 GPIPPTIGY--LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
GPI P + L L L N IPP L NCS+L +L ++ N LSG+IPS +G+L
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENN 388
LR L L N + G IP +L + + + + N+L+G IP + L W S N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 389 LEVENP 394
L E P
Sbjct: 499 LTGEIP 504
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
+ LD+SYN L+G IP EIGS+ L LNL +N ++GSIP E G+L+ L L L NKLD
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL-VSLFLDNNNLTG-PIP 157
G IP ++ LT LT +DLS N LSG +P E+G + + FL+N L G P+P
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGLCGYPLP 743
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 122/269 (45%), Gaps = 13/269 (4%)
Query: 116 TNLTHLDLSLNQLSGRLPQ--EVGNLKNLVSLFLDNNNLTGPIP-STLYHLNQLSTLYLA 172
+LT LDLS N LSG + +G+ L L + +N L P S LN L L L+
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 173 YNNLVGPLPKEVGXXXXXXXXXXXXXXXTG-PIPSTIGFLNL--LDELRLSHNRLDGPIP 229
N++ G VG +G I + L+ L +S N IP
Sbjct: 157 ANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 214
Query: 230 PTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSL 289
+G+ + L LD+S N+LSG R + L L++ N +GPIPP L +L L
Sbjct: 215 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 271
Query: 290 NLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 348
+L N+ IP L C L L ++ N G++P G+ L L LS N +G +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 349 P-SQLGKIPNVSEVDVSKNNLSGVIPKSV 376
P L K+ + +D+S N SG +P+S+
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
+SG IP E G L L +LDLS N+L G IP + +L L E++LS N L+G IP E G
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 723
Query: 92 K 92
+
Sbjct: 724 E 724
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 9/152 (5%)
Query: 238 LTSLDLSSNQLSGLLP--REVGNLKYLDSLSLDRNNLIGPIPPTIGY-LTNLTSLNLGYN 294
LTSLDLS N LSG + +G+ L L++ N L P + G L +L L+L N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 295 QLNSSIPPELM---NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQ 351
++ + + C +L++LA++ N +SG + ++ ++L LD+S N + IP
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF- 215
Query: 352 LGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK 383
LG + +D+S N LSG +++ LK
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELK 247
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 194/383 (50%), Gaps = 8/383 (2%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
G S L+ LD+S N+L+G I + +L LN+S N G IP LK L L L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 101 GNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP-S 158
NK G IP + G LT LDLS N G +P G+ L SL L +NN +G +P
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 159 TLYHLNQLSTLYLAYNNLVGPLPKEV-GXXXXXXXXXXXXXXXTGPIPSTIGF--LNLLD 215
TL + L L L++N G LP+ + +GPI + N L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 216 ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGP 275
EL L +N G IPPT+ N + L SL LS N LSG +P +G+L L L L N L G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 276 IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLR 335
IP + Y+ L +L L +N L IP L NC+ L +++++N L+G IP IG L +L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 336 QLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVENPV 395
L LS+N +G IP++LG ++ +D++ N +G IP ++F+ G K + N + + V
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIAANFIAGKRYV 576
Query: 396 ISENAPPPQTQHFKGNKGKNQKI 418
+N + H GN + Q I
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGI 599
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/393 (33%), Positives = 188/393 (47%), Gaps = 50/393 (12%)
Query: 32 LSGRIPSETGALSR-LKVLDLSYNRLTGTIPSEIGSLR-DLLELNLSYNILNGSI-PLEF 88
SG +P +T R LKVLDLS+N +G +P + +L LL L+LS N +G I P
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 89 GNLKD-LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147
N K+ L +L LQ N G IP ++ N + L L LS N LSG +P +G+L L L L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 148 DNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPST 207
N L G IP L ++ L TL L +N+L G +P + TG IP
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV----------- 256
IG L L L+LS+N G IP +G+ L LDL++N +G +P +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Query: 257 ---------------------GNLKYLDSLSLDRNNLI--------------GPIPPTIG 281
GNL + ++ N + G PT
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 282 YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSH 341
++ L++ YN L+ IP E+ + L L + HN +SGSIP E+G+L L LDLS
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 342 NFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPK 374
N ++G IP + + ++E+D+S NNLSG IP+
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 13/304 (4%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGN 90
+LSG IPS G+LS+L+ L L N L G IP E+ ++ L L L +N L G IP N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
+L + L N+L G IP IG L NL L LS N SG +P E+G+ ++L+ L L+ N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 151 NLTGPIPSTLY-HLNQLSTLYLAYNNLV----GPLPKEVGXXXXXXXXXXXXXXXTGPIP 205
G IP+ ++ +++ ++A V + KE G
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-------HGAGNLLEFQGIRS 601
Query: 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL 265
+ L+ + ++ G PT N + LD+S N LSG +P+E+G++ YL L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 266 SLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
+L N++ G IP +G L L L+L N+L+ IP + + L + +++N+LSG IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 326 SEIG 329
E+G
Sbjct: 722 -EMG 724
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 33/320 (10%)
Query: 32 LSGRIPSE-TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FG 89
+G IP +GA L LDLS N G +P GS L L LS N +G +P++
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 90 NLKDLYDLRLQGNKLDGLIPSSIGNLT-NLTHLDLSLNQLSGR-LPQEVGNLKN-LVSLF 146
++ L L L N+ G +P S+ NL+ +L LDLS N SG LP N KN L L+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPS 206
L NN TG IP TL + ++L +L+L++N L +G IPS
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYL------------------------SGTIPS 436
Query: 207 TIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
++G L+ L +L+L N L+G IP + + L +L L N L+G +P + N L+ +S
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 267 LDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS 326
L N L G IP IG L NL L L N + +IP EL +C L L +N N +G+IP+
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 327 EIGNLIHLRQLDLSHNFING 346
+ + ++ NFI G
Sbjct: 557 A----MFKQSGKIAANFIAG 572
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 172/366 (46%), Gaps = 22/366 (6%)
Query: 43 LSRLKVLDLSYNRLTGT------IPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96
L+ L+VLDLS N ++G + G L+ L +S N ++G + + +L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDV--DVSRCVNLEF 204
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L + N IP +G+ + L HLD+S N+LSG + + L L + +N GPI
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 157 PSTLYHLNQLSTLYLAYNNLVGPLPKEV-GXXXXXXXXXXXXXXXTGPIPSTIGFLNLLD 215
P L L L LA N G +P + G G +P G +LL+
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 216 ELRLSHNRLDGPIP-PTIGNLTYLTSLDLSSNQLSGLLPREVGNLKY-LDSLSLDRNNLI 273
L LS N G +P T+ + L LDLS N+ SG LP + NL L +L L NN
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 274 GPIPPTIGY--LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNL 331
GPI P + L L L N IPP L NCS+L +L ++ N LSG+IPS +G+L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 332 IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW---SENN 388
LR L L N + G IP +L + + + + N+L+G IP + L W S N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 389 LEVENP 394
L E P
Sbjct: 502 LTGEIP 507
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
+ LD+SYN L+G IP EIGS+ L LNL +N ++GSIP E G+L+ L L L NKLD
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL-VSLFLDNNNLTG-PIP 157
G IP ++ LT LT +DLS N LSG +P E+G + + FL+N L G P+P
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGLCGYPLP 746
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 122/269 (45%), Gaps = 13/269 (4%)
Query: 116 TNLTHLDLSLNQLSGRLPQ--EVGNLKNLVSLFLDNNNLTGPIP-STLYHLNQLSTLYLA 172
+LT LDLS N LSG + +G+ L L + +N L P S LN L L L+
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 173 YNNLVGPLPKEVGXXXXXXXXXXXXXXXTG-PIPSTIGFLNL--LDELRLSHNRLDGPIP 229
N++ G VG +G I + L+ L +S N IP
Sbjct: 160 ANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217
Query: 230 PTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSL 289
+G+ + L LD+S N+LSG R + L L++ N +GPIPP L +L L
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274
Query: 290 NLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 348
+L N+ IP L C L L ++ N G++P G+ L L LS N +G +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 349 P-SQLGKIPNVSEVDVSKNNLSGVIPKSV 376
P L K+ + +D+S N SG +P+S+
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 32 LSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL 91
+SG IP E G L L +LDLS N+L G IP + +L L E++LS N L+G IP E G
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 726
Query: 92 K 92
+
Sbjct: 727 E 727
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 9/152 (5%)
Query: 238 LTSLDLSSNQLSGLLP--REVGNLKYLDSLSLDRNNLIGPIPPTIGY-LTNLTSLNLGYN 294
LTSLDLS N LSG + +G+ L L++ N L P + G L +L L+L N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 295 QLNSSIPPELM---NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQ 351
++ + + C +L++LA++ N +SG + ++ ++L LD+S N + IP
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-F 218
Query: 352 LGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLK 383
LG + +D+S N LSG +++ LK
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 123/263 (46%), Gaps = 30/263 (11%)
Query: 18 FPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSY 77
P L I G L G IP L++L L +++ ++G IP + ++ L+ L+ SY
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134
Query: 78 NILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNL-THLDLSLNQLSGRLPQEV 136
N L+G++P +L +L + GN++ G IP S G+ + L T + +S N+L+G++P
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 137 GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXX 196
NL NL + L N L G ++LA N+L L K
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------------- 239
Query: 197 XXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV 256
+G L+ L L +NR+ G +P + L +L SL++S N L G +P+
Sbjct: 240 -----------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287
Query: 257 GNLKYLDSLSLDRNNLI--GPIP 277
GNL+ D + N + P+P
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPLP 310
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 111/245 (45%), Gaps = 50/245 (20%)
Query: 155 PIPSTLYHLNQLSTLYLA-YNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNL 213
PIPS+L +L L+ LY+ NNLVGP IP I L
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGP------------------------IPPAIAKLTQ 102
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
L L ++H + G IP + + L +LD S N LSG LP + +L L ++ D N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 274 GPIPPTIGYLTNL-TSLNLGYNQLNSSIPPELMNCS-----------------------Q 309
G IP + G + L TS+ + N+L IPP N +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 310 LQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
Q + + NSL+ + ++G +L LDL +N I GT+P L ++ + ++VS NNL
Sbjct: 223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 370 GVIPK 374
G IP+
Sbjct: 282 GEIPQ 286
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 8/206 (3%)
Query: 203 PIPSTIGFLNLLDELRLSH-NRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKY 261
PIPS++ L L+ L + N L GPIPP I LT L L ++ +SG +P + +K
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 262 LDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL-QNLAVNHNSL 320
L +L N L G +PP+I L NL + N+++ +IP + S+L ++ ++ N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 321 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVP 380
+G IP NL +L +DLS N + G G N ++ ++KN+L+ + K
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----- 240
Query: 381 GLKWSENNLEVENPVISENAPPPQTQ 406
GL + N L++ N I P TQ
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 252 LPREVGNLKYLDSLSLDR-NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 310
+P + NL YL+ L + NNL+GPIPP I LT L L + + ++ +IP L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 311 QNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNV-SEVDVSKNNLS 369
L ++N+LSG++P I +L +L + N I+G IP G + + + +S+N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 370 GVIPKSV--FRVPGLKWSENNLEVENPVISENAPPPQTQHFKGN 411
G IP + + + S N LE + V+ + Q H N
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 143/336 (42%), Gaps = 34/336 (10%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IP+ET ++LDL NR+ E S L EL L+ NI++ P F NL +L
Sbjct: 30 IPTET------RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 96 DLRLQGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
L L+ N+L LIP + L+NLT LD+S N++ L +L NL SL + +N+L
Sbjct: 84 TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLL 214
LN L L L NL +P E + L+ L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTS-IPTE-----------------------ALSHLHGL 178
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSS-NQLSGLLPREVGNLKYLDSLSLDRNNLI 273
LRL H ++ + L L L++S L + P + L L SLS+ NL
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLT 237
Query: 274 GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIH 333
+ +L L LNL YN +++ L +LQ + + L+ P L +
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297
Query: 334 LRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS 369
LR L++S N + S + N+ + + N L+
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 51/295 (17%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLS 167
+P I T L LDL N++ E + +L L L+ N ++ P +L L
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 168 TLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGP 227
TL L N L P+ G NL +L +S N++
Sbjct: 84 TLGLRSNRL-----------------------KLIPLGVFTGLSNL-TKLDISENKIVIL 119
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLT 287
+ +L L SL++ N L + R L L+ L+L++ NL + +L L
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179
Query: 288 SLNLGYNQLNS------------------------SIPPELMNCSQLQNLAVNHNSLSGS 323
L L + +N+ ++ P + L +L++ H +L+
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239
Query: 324 IPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ +L++LR L+LS+N I+ S L ++ + E+ + L+ V P + FR
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA-FR 293
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 149/325 (45%), Gaps = 38/325 (11%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L +L ++N S N L PL+ NL L D+ + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL--VGPLPK-- 182
Q++ P + NL NL L L +N ++ S L L L L + N + + PL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLT 173
Query: 183 -----EVGXXXXXXXXXXXXXXXTGPIPST---------IGFLNLLDELRLSHNRLDGPI 228
++ + +T +G L LDEL L+ N+L
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI- 232
Query: 229 PPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTS 288
T+ +LT LT LDL++NQ+S L P + L L L L N I I P G LT LT+
Sbjct: 233 -GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISPLAG-LTALTN 287
Query: 289 LNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 348
L L NQL P + N L L + N++S P + +L L++L S+N ++
Sbjct: 288 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV- 342
Query: 349 PSQLGKIPNVSEVDVSKNNLSGVIP 373
S L + N++ + N +S + P
Sbjct: 343 -SSLANLTNINWLSAGHNQISDLTP 366
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174
L NLT ++ S NQL+ P + NL LV + ++NN + P L +L L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 175 NL--VGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
+ + PL S + L L +L S N++ P +
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDI------SALSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
NLT L LD+SSN++S + + L L+SL + NN I I P +G LTNL L+L
Sbjct: 170 ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLN 225
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
NQL L + + L +L + +N +S P + L L +L L N I+ P L
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ ++ +++++N L + P S +
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLK 305
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ YL NLT +N NQL P L N ++L ++ +N+N ++ P + NL +L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
+N I P L + N++ +++S N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 148/325 (45%), Gaps = 38/325 (11%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L +L ++N S N L PL+ NL L D+ + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL--VGPLPK-- 182
Q++ P + NL NL L L +N ++ S L L L L + N + + PL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLT 173
Query: 183 -----EVGXXXXXXXXXXXXXXXTGPIPST---------IGFLNLLDELRLSHNRLDGPI 228
++ + +T +G L LDEL L+ N+L
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI- 232
Query: 229 PPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTS 288
T+ +LT LT LDL++NQ+S L P + L L L L N I I P G LT LT+
Sbjct: 233 -GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISPLAG-LTALTN 287
Query: 289 LNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 348
L L NQL P + N L L + N++S P + +L L++L +N ++
Sbjct: 288 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV- 342
Query: 349 PSQLGKIPNVSEVDVSKNNLSGVIP 373
S L + N++ + N +S + P
Sbjct: 343 -SSLANLTNINWLSAGHNQISDLTP 366
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174
L NLT ++ S NQL+ P + NL LV + ++NN + P L +L L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 175 NL--VGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
+ + PL S + L L +L S N++ P +
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDI------SALSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
NLT L LD+SSN++S + + L L+SL + NN I I P +G LTNL L+L
Sbjct: 170 ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLN 225
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
NQL L + + L +L + +N +S P + L L +L L N I+ P L
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ ++ +++++N L + P S +
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLK 305
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ YL NLT +N NQL P L N ++L ++ +N+N ++ P + NL +L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
+N I P L + N++ +++S N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 148/325 (45%), Gaps = 38/325 (11%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L +L ++N S N L PL+ NL L D+ + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL--VGPLPK-- 182
Q++ P + NL NL L L +N ++ S L L L L + N + + PL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLT 173
Query: 183 -----EVGXXXXXXXXXXXXXXXTGPIPST---------IGFLNLLDELRLSHNRLDGPI 228
++ + +T +G L LDEL L+ N+L
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI- 232
Query: 229 PPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTS 288
T+ +LT LT LDL++NQ+S L P + L L L L N I I P G LT LT+
Sbjct: 233 -GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISPLAG-LTALTN 287
Query: 289 LNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 348
L L NQL P + N L L + N++S P + +L L++L +N ++
Sbjct: 288 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV- 342
Query: 349 PSQLGKIPNVSEVDVSKNNLSGVIP 373
S L + N++ + N +S + P
Sbjct: 343 -SSLANLTNINWLSAGHNQISDLTP 366
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174
L NLT ++ S NQL+ P + NL LV + ++NN + P L +L L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 175 NL--VGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
+ + PL S + L L +L S N++ P +
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDI------SALSGLTSLQQLNFSSNQVTDLKP--L 169
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
NLT L LD+SSN++S + + L L+SL + NN I I P +G LTNL L+L
Sbjct: 170 ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLN 225
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
NQL L + + L +L + +N +S P + L L +L L N I+ P L
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ ++ +++++N L + P S +
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLK 305
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ YL NLT +N NQL P L N ++L ++ +N+N ++ P + NL +L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
+N I P L + N++ +++S N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 151/327 (46%), Gaps = 43/327 (13%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L +L ++N S N L PL+ NL L D+ + N++ + P + NLTNLT L L N
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLY-LAYNNLVGPLPK--- 182
Q++ P + NL NL L L +N + S + L+ L++L L++ N V L
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDLKPLAN 174
Query: 183 -------EVGXXXXXXXXXXXXXXXTGPIPST---------IGFLNLLDELRLSHNRLDG 226
++ + +T +G L LDEL L+ N+L
Sbjct: 175 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 234
Query: 227 PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNL 286
T+ +LT LT LDL++NQ+S L P + L L L L N I I P G LT L
Sbjct: 235 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISPLAG-LTAL 288
Query: 287 TSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFING 346
T+L L NQL P + N L L + N++S P + +L L++L ++N ++
Sbjct: 289 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 344
Query: 347 TIPSQLGKIPNVSEVDVSKNNLSGVIP 373
S L + N++ + N +S + P
Sbjct: 345 V--SSLANLTNINWLSAGHNQISDLTP 369
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 25/266 (9%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174
L NLT ++ S NQL+ P + NL LV + ++NN + P L +L L+ L L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 175 NL--VGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
+ + PL S + L L +L + D + P +
Sbjct: 122 QITDIDPLKNLTNLNRLELSSNTISDI------SALSGLTSLQQLSFGNQVTD--LKP-L 172
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
NLT L LD+SSN++S + + L L+SL + NN I I P +G LTNL L+L
Sbjct: 173 ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLN 228
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
NQL L + + L +L + +N +S P + L L +L L N I+ P L
Sbjct: 229 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 282
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ ++ +++++N L + P S +
Sbjct: 283 AGLTALTNLELNENQLEDISPISNLK 308
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ YL NLT +N NQL P L N ++L ++ +N+N ++ P + NL +L L L
Sbjct: 63 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 118
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
+N I P L + N++ +++S N +S +
Sbjct: 119 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 148
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 150/327 (45%), Gaps = 43/327 (13%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L +L ++N S N L PL+ NL L D+ + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLY-LAYNNLVGPLPK--- 182
Q++ P + NL NL L L +N + S + L+ L++L L + N V L
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDLKPLAN 170
Query: 183 -------EVGXXXXXXXXXXXXXXXTGPIPST---------IGFLNLLDELRLSHNRLDG 226
++ + +T +G L LDEL L+ N+L
Sbjct: 171 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 230
Query: 227 PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNL 286
T+ +LT LT LDL++NQ+S L P + L L L L N I I P G LT L
Sbjct: 231 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISPLAG-LTAL 284
Query: 287 TSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFING 346
T+L L NQL P + N L L + N++S P + +L L++L S+N ++
Sbjct: 285 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD 340
Query: 347 TIPSQLGKIPNVSEVDVSKNNLSGVIP 373
S L + N++ + N +S + P
Sbjct: 341 V--SSLANLTNINWLSAGHNQISDLTP 365
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 25/266 (9%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174
L NLT ++ S NQL+ P + NL LV + ++NN + P L +L L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 175 NL--VGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
+ + PL S + L L +L + D + P +
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDI------SALSGLTSLQQLNFGNQVTD--LKP-L 168
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
NLT L LD+SSN++S + + L L+SL + NN I I P +G LTNL L+L
Sbjct: 169 ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLN 224
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
NQL L + + L +L + +N +S P + L L +L L N I+ P L
Sbjct: 225 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 278
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ ++ +++++N L + P S +
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLK 304
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ YL NLT +N NQL P L N ++L ++ +N+N ++ P + NL +L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
+N I P L + N++ +++S N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 150/327 (45%), Gaps = 43/327 (13%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L +L ++N S N L PL+ NL L D+ + N++ + P + NLTNLT L L N
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLY-LAYNNLVGPLPK--- 182
Q++ P + NL NL L L +N + S + L+ L++L L++ N V L
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDLKPLAN 175
Query: 183 -------EVGXXXXXXXXXXXXXXXTGPIPST---------IGFLNLLDELRLSHNRLDG 226
++ + +T +G L LDEL L+ N+L
Sbjct: 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235
Query: 227 PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNL 286
T+ +LT LT LDL++NQ+S L P + L L L L N I I P G LT L
Sbjct: 236 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISPLAG-LTAL 289
Query: 287 TSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFING 346
T+L L NQL P + N L L + N++S P + +L L++L +N ++
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345
Query: 347 TIPSQLGKIPNVSEVDVSKNNLSGVIP 373
S L + N++ + N +S + P
Sbjct: 346 V--SSLANLTNINWLSAGHNQISDLTP 370
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 126/283 (44%), Gaps = 43/283 (15%)
Query: 115 LTNLTHLDLSLNQLSGRLPQE--------------------VGNLKNLVSLFLDNNNLTG 154
L NLT ++ S NQL+ P + + NL NL L L NN +T
Sbjct: 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 126
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLL 214
P L +L L+ L L+ N + + G P+ + L L
Sbjct: 127 IDP--LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLAN----LTTL 179
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL-- 272
+ L +S N++ + LT L SL ++NQ+S + P +G L LD LSL+ N L
Sbjct: 180 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235
Query: 273 IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLI 332
IG T+ LTNLT L+L NQ+++ P L ++L L + N +S P + L
Sbjct: 236 IG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287
Query: 333 HLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKS 375
L L+L+ N + P + + N++ + + NN+S + P S
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 328
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ YL NLT +N NQL P L N ++L ++ +N+N ++ P + NL +L L L
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
+N I P L + N++ +++S N +S +
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 149
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 149/327 (45%), Gaps = 43/327 (13%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L +L ++N S N L PL+ NL L D+ + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLY-LAYNNLVGPLPK--- 182
Q++ P + NL NL L L +N + S + L+ L++L L + N V L
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDLKPLAN 170
Query: 183 -------EVGXXXXXXXXXXXXXXXTGPIPST---------IGFLNLLDELRLSHNRLDG 226
++ + +T +G L LDEL L+ N+L
Sbjct: 171 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 230
Query: 227 PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNL 286
T+ +LT LT LDL++NQ+S L P + L L L L N I I P G LT L
Sbjct: 231 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISPLAG-LTAL 284
Query: 287 TSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFING 346
T+L L NQL P + N L L + N++S P + +L L++L +N ++
Sbjct: 285 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 340
Query: 347 TIPSQLGKIPNVSEVDVSKNNLSGVIP 373
S L + N++ + N +S + P
Sbjct: 341 V--SSLANLTNINWLSAGHNQISDLTP 365
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 25/266 (9%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174
L NLT ++ S NQL+ P + NL LV + ++NN + P L +L L+ L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 175 NL--VGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTI 232
+ + PL S + L L +L + D + P +
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDI------SALSGLTSLQQLNFGNQVTD--LKP-L 168
Query: 233 GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
NLT L LD+SSN++S + + L L+SL + NN I I P +G LTNL L+L
Sbjct: 169 ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLN 224
Query: 293 YNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 352
NQL L + + L +L + +N +S P + L L +L L N I+ P L
Sbjct: 225 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 278
Query: 353 GKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ ++ +++++N L + P S +
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLK 304
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
+ YL NLT +N NQL P L N ++L ++ +N+N ++ P + NL +L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 340 SHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
+N I P L + N++ +++S N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 2 DNNGNAAELSQLN-FTCFPNLVTFRIWGTRFLSG----RIPSETGALSRLKVLDLSYNRL 56
D +A +LS L F N+ + +L+G +P+E LS L+VLDLS+NRL
Sbjct: 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL 282
Query: 57 TGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
T ++P+E+GS L N++ ++P EFGNL +L L ++GN L+
Sbjct: 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 240 SLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS 299
+LDLS+ Q+ + + +L L L+ N+L +P I L+NL L+L +N+L +S
Sbjct: 228 ALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TS 284
Query: 300 IPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
+P EL +C QL+ N ++ ++P E GNL +L+ L + N
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 310 LQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLG 353
L L +N NSL+ +P+EI NL +LR LDLSHN + ++P++LG
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 67 LRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLN 126
L +L N+S NI ++ L LY L GN L L P+ I NL+NL LDLS N
Sbjct: 231 LSNLQIFNISANIF------KYDFLTRLY---LNGNSLTEL-PAEIKNLSNLRVLDLSHN 280
Query: 127 QLSGRLPQEVGNLKNLVSLFLDNNNLT 153
+L+ LP E+G+ L + +N +T
Sbjct: 281 RLTS-LPAELGSCFQLKYFYFFDNMVT 306
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGN---LK 260
I + I + L L L+ N L +P I NL+ L LDLS N+L+ LP E+G+ LK
Sbjct: 239 ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 261 YLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 300
Y +N++ +P G L NL L + N L
Sbjct: 297 YFYFF----DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Query: 43 LSRLKVLDLSYN-RLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
L+ L+ LDLS N +L P+ L L L+L L P F L L L LQ
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
N L L + +L NLTHL L N++S + L +L L L N + P
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 162 HLNQLSTLYLAYNNLVGPLPKEV 184
L +L TLYL NNL LP E
Sbjct: 199 DLGRLMTLYLFANNLSA-LPTEA 220
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 57/141 (40%)
Query: 37 PSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96
P+ L RL L L L P L L L L N L F +L +L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L GN++ + + L +L L L N+++ P +L L++L+L NNL+
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 157 PSTLYHLNQLSTLYLAYNNLV 177
L L L L L N V
Sbjct: 218 TEALAPLRALQYLRLNDNPWV 238
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Query: 43 LSRLKVLDLSYN-RLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
L+ L+ LDLS N +L P+ L L L+L L P F L L L LQ
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
N L L + +L NLTHL L N++S + L +L L L N + P
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 162 HLNQLSTLYLAYNNLVGPLPKEV 184
L +L TLYL NNL LP E
Sbjct: 198 DLGRLMTLYLFANNLSA-LPTEA 219
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 57/141 (40%)
Query: 37 PSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96
P+ L RL L L L P L L L L N L F +L +L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L GN++ + + L +L L L N+++ P +L L++L+L NNL+
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 157 PSTLYHLNQLSTLYLAYNNLV 177
L L L L L N V
Sbjct: 217 TEALAPLRALQYLRLNDNPWV 237
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 1 MDNNGNAAELSQLNFTCFPNLVTFRIWGTRFLSGRI---PSET-GALSRLKVLDLSYNRL 56
+NN N+ + S T P+ + S ++ PS+ L++L++L L+ N+L
Sbjct: 14 CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 57 TGTIPSEI-GSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQGNKLDGLIPSSIGN 114
T+P+ I L++L L ++ N L ++P+ F L +L +LRL N+L L P +
Sbjct: 74 Q-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 115 LTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173
LT LT+L L N+L LP+ V L +L L L NN L L +L TL L
Sbjct: 132 LTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 174 NNL 176
N L
Sbjct: 191 NQL 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L L+ N+L L L +L ++ N+L L L L L LDRN L
Sbjct: 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P LT LT L+LGYN+L S + L+ L + +N L L L+
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 337 LDLSHNFINGTIPSQLGKIP 356
L L +N QL ++P
Sbjct: 186 LKLDNN--------QLKRVP 197
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 54/135 (40%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
L+ L ++ N+L L L L L NQL L PR +L L LSL N L
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 274 GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIH 333
LT+L L L NQL ++L+ L +++N L +L
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Query: 334 LRQLDLSHNFINGTI 348
L+ L L N + T
Sbjct: 207 LKMLQLQENPWDCTC 221
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 67/181 (37%), Gaps = 26/181 (14%)
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNN 151
D L LQ NKL L + LT L L L+ N+L LP + LKNL +L++ +N
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96
Query: 152 LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
L L L+ L L N L LP P L
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKS-LP-----------------------PRVFDSL 132
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
L L L +N L LT L L L +NQL + L L +L LD N
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 272 L 272
L
Sbjct: 193 L 193
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 33/253 (13%)
Query: 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPL 180
LDL N+++ + NLKNL +L L NN ++ P L +L LYL+ N L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 181 PKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTS 240
P++ +P T L ELR+ N + L +
Sbjct: 116 PEK--------------------MPKT------LQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 241 LDLSSNQL--SGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
++L +N L SG+ +K L + + N I IP G +LT L+L N++
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKITK 206
Query: 299 SIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNV 358
L + L L ++ NS+S + N HLR+L L++N + +P L +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYI 265
Query: 359 SEVDVSKNNLSGV 371
V + NN+S +
Sbjct: 266 QVVYLHNNNISAI 278
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 78/190 (41%), Gaps = 10/190 (5%)
Query: 87 EFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLF 146
+F NLK+L+ L L NK+ + P + L L L LS NQL LP+++ K L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127
Query: 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPK---EVGXXXXXXXXXXXXXXXTGP 203
+ N +T S LNQ+ + L N PL E G T
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTN----PLKSSGIENGAFQGMKKLSYIRIADTNI 183
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
G L EL L N++ ++ L L L LS N +S + + N +L
Sbjct: 184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243
Query: 264 SLSLDRNNLI 273
L L+ N L+
Sbjct: 244 ELHLNNNKLV 253
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 33/253 (13%)
Query: 121 LDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPL 180
LDL N+++ + NLKNL +L L NN ++ P L +L LYL+ N L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 181 PKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTS 240
P++ +P T L ELR+ N + L +
Sbjct: 116 PEK--------------------MPKT------LQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 241 LDLSSNQL--SGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
++L +N L SG+ +K L + + N I IP G +LT L+L N++
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKITK 206
Query: 299 SIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNV 358
L + L L ++ NS+S + N HLR+L L++N + +P L +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYI 265
Query: 359 SEVDVSKNNLSGV 371
V + NN+S +
Sbjct: 266 QVVYLHNNNISAI 278
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 78/190 (41%), Gaps = 10/190 (5%)
Query: 87 EFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLF 146
+F NLK+L+ L L NK+ + P + L L L LS NQL LP+++ K L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127
Query: 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPK---EVGXXXXXXXXXXXXXXXTGP 203
+ N +T S LNQ+ + L N PL E G T
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTN----PLKSSGIENGAFQGMKKLSYIRIADTNI 183
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
G L EL L N++ ++ L L L LS N +S + + N +L
Sbjct: 184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243
Query: 264 SLSLDRNNLI 273
L L+ N L+
Sbjct: 244 ELHLNNNKLV 253
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 32 LSGRIPSETGALSRLKVLDLSYN-RLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGN 90
L+G + L+ L+ LDLS N +L P+ L L L+L L P F
Sbjct: 67 LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRG 126
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
L L L LQ N L L ++ +L NLTHL L N++ L +L L L N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV 184
++ P L +L TLYL NNL LP EV
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEV 219
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 86/222 (38%), Gaps = 27/222 (12%)
Query: 99 LQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL-DNNNLTGPIP 157
L GN++ + +S + NLT L L N L+G L L L L DN L P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 158 STLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDEL 217
+T L L TL+L L +E+G P L L L
Sbjct: 98 TTFRGLGHLHTLHLDRCGL-----QELG-------------------PGLFRGLAALQYL 133
Query: 218 RLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIP 277
L N L T +L LT L L N++ + L LD L L +N++ P
Sbjct: 134 YLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 278 PTIGYLTNLTSLNLGYNQLNSSIPPE-LMNCSQLQNLAVNHN 318
L L +L L N L S +P E L+ LQ L +N N
Sbjct: 194 HAFRDLGRLMTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%)
Query: 37 PSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYD 96
P+ L L L L L P L L L L N L F +L +L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L GN++ + + L +L L L N ++ P +L L++L+L NNL+
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 157 PSTLYHLNQLSTLYLAYNNLV 177
L L L L L N V
Sbjct: 217 AEVLVPLRSLQYLRLNDNPWV 237
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI-PPTIGYLTNLTSLNLGYNQL 296
LT L L SN L+G+ L L+ L L N + + P T L +L +L+L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 297 NSSIPPELMNCSQLQNLAVNHNSLSGSIPS----EIGNLIHLRQLDLSHNFINGTIPSQL 352
P + LQ L + N+L ++P ++GNL HL F++G
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHL--------FLHGN----- 162
Query: 353 GKIPNVSE 360
+IP+V E
Sbjct: 163 -RIPSVPE 169
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 143/358 (39%), Gaps = 66/358 (18%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
A S ++ LDLS+ + +L+DL LNL+YN +N F L +L L L
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
N L L S+ L + ++DL N ++ Q L+ L +L L +N LT T++
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIH 378
Query: 162 HLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDEL-RLS 220
+ + ++L+ N LV LPK +NL L LS
Sbjct: 379 FIPSIPDIFLSGNKLV-TLPK----------------------------INLTANLIHLS 409
Query: 221 HNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT 279
NRL+ I + + +L L L+ N+ S S S D+ P
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFS--------------SCSGDQTPSENP---- 451
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELM-----NCSQLQNLAVNHNSLSGSIPSEIGNLIHL 334
+L L LG N L + EL S LQ L +NHN L+ P +L L
Sbjct: 452 -----SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506
Query: 335 RQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKWSENNLEVE 392
R L L+ N + T+ S N+ +D+S+N L P + L + N E
Sbjct: 507 RGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICE 562
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 138/372 (37%), Gaps = 53/372 (14%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L L++LDL +++ P L L EL L + L+ ++ LKD Y
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV------LKDGY------- 118
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
NL LT LDLS NQ+ S L G L +L S+ +N + L
Sbjct: 119 ---------FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169
Query: 162 HLN--QLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTG----PIPSTIGFLNLLD 215
L LS LA N+L + + G + T F N +
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229
Query: 216 E-----LRLSHNRLDG---------PIPPTIGNL--TYLTSLDLSSNQLSGLLPREVGNL 259
+ L L+H+ + P T L + + LDLS + L R L
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Query: 260 KYLDSLSLDRNNLIGPIPPTIGY-LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHN 318
K L L+L N I I Y L NL LNL YN L ++ + + N
Sbjct: 290 KDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 319 SLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
++ L L+ LDL N + + + IP++ ++ +S N L +PK
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPKINLT 402
Query: 379 VPGLKWSENNLE 390
+ SEN LE
Sbjct: 403 ANLIHLSENRLE 414
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
+P E L ++DLS NR++ ++ LL L LSYN L P F LK L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQL 128
L L GN + + + +L+ L+HL + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94
R P+E L V+ S N+ +P I RD+ EL L N +P E N K L
Sbjct: 3 RCPTECTCLD--TVVRCS-NKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL 56
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
+ L N++ L S N+T L L LS N+L P+ LK+L L L N+++
Sbjct: 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116
Query: 155 PIPSTLYHLNQLSTLYLAYNNL 176
L+ LS L + N L
Sbjct: 117 VPEGAFNDLSALSHLAIGANPL 138
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 228 IPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLT 287
+P + N +LT +DLS+N++S L + N+ L +L L N L P T L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 288 SLNLGYNQLNSSIPPE--LMNCSQLQNLAVNHNSL 320
L+L N + S+ PE + S L +LA+ N L
Sbjct: 106 LLSLHGNDI--SVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
+P + L + LS+NR+ + N+T L +L LS N+L + PR LK L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 264 SLSLDRNNLIGPIPP-TIGYLTNLTSLNLGYNQL 296
LSL N+ I +P L+ L+ L +G N L
Sbjct: 106 LLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLN 297
+T L L NQ + L+P+E+ N K+L + L N + + +T L +L L YN+L
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 298 SSIPPELMN-CSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
IPP + L+ L+++ N +S +L L L + N
Sbjct: 92 -CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 16 TCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNL 75
TC +V G + L IP + L L N+ T +P E+ + + L ++L
Sbjct: 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDL 61
Query: 76 SYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129
S N ++ F N+ L L L N+L + P + L +L L L N +S
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 241 LDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 300
+DLS N L L N L L L R + L +L++L L N + S
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 301 PPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGT-IPSQLGKIPNVS 359
P + L+NL L+ IG LI L++L+++HNFI+ +P+ + N+
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 360 EVDVSKNNLSGV 371
VD+S N + +
Sbjct: 157 HVDLSYNYIQTI 168
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 61/139 (43%), Gaps = 6/139 (4%)
Query: 42 ALSRLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLE--FGNLKDLYDLR 98
L L+ LD ++ L S SL LL L++SY N I + F L L L+
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT--NTKIDFDGIFLGLTSLNTLK 454
Query: 99 LQGNKL-DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP 157
+ GN D + + N TNLT LDLS QL L L L + +NNL
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514
Query: 158 STLYHLNQLSTLYLAYNNL 176
S L LSTL ++N +
Sbjct: 515 SHYNQLYSLSTLDCSFNRI 533
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
+ LS N L + N + L LDLS ++ + + L +L +L L N +
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL-SGSIPSEIGNLIHLR 335
P + LT+L +L +L S + L+ L V HN + S +P+ NL +L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 336 QLDLSHNFINGTIPSQLGKIPNVSEVDVS 364
+DLS+N+I + L + +V++S
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 214 LDELRLSHNRL-DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
L+ L+++ N D + N T LT LDLS QL + L L L++ NNL
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 273 IGPIPPTIGYLTNLTSLNLGYNQLNSS 299
+ L +L++L+ +N++ +S
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETS 536
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IPS T K +DLS+N L + +L L+LS + + L L
Sbjct: 30 IPSST------KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNL-TG 154
+L L GN + P S LT+L +L +L+ +G L L L + +N + +
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 155 PIPSTLYHLNQLSTLYLAYN 174
+P+ +L L + L+YN
Sbjct: 144 KLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 241 LDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 300
+DLS N L L N L L L R + L +L++L L N + S
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 301 PPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGT-IPSQLGKIPNVS 359
P + L+NL L+ IG LI L++L+++HNFI+ +P+ + N+
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 360 EVDVSKNNLSGV 371
VD+S N + +
Sbjct: 152 HVDLSYNYIQTI 163
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 61/139 (43%), Gaps = 6/139 (4%)
Query: 42 ALSRLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLE--FGNLKDLYDLR 98
L L+ LD ++ L S SL LL L++SY N I + F L L L+
Sbjct: 392 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT--NTKIDFDGIFLGLTSLNTLK 449
Query: 99 LQGNKL-DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIP 157
+ GN D + + N TNLT LDLS QL L L L + +NNL
Sbjct: 450 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 509
Query: 158 STLYHLNQLSTLYLAYNNL 176
S L LSTL ++N +
Sbjct: 510 SHYNQLYSLSTLDCSFNRI 528
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
+ LS N L + N + L LDLS ++ + + L +L +L L N +
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSL-SGSIPSEIGNLIHLR 335
P + LT+L +L +L S + L+ L V HN + S +P+ NL +L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 336 QLDLSHNFINGTIPSQLGKIPNVSEVDVS 364
+DLS+N+I + L + +V++S
Sbjct: 152 HVDLSYNYIQTITVNDLQFLRENPQVNLS 180
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 214 LDELRLSHNRL-DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
L+ L+++ N D + N T LT LDLS QL + L L L++ NNL
Sbjct: 445 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
Query: 273 IGPIPPTIGYLTNLTSLNLGYNQLNSS 299
+ L +L++L+ +N++ +S
Sbjct: 505 LFLDSSHYNQLYSLSTLDCSFNRIETS 531
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IPS T K +DLS+N L + +L L+LS + + L L
Sbjct: 25 IPSST------KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNL-TG 154
+L L GN + P S LT+L +L +L+ +G L L L + +N + +
Sbjct: 79 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 138
Query: 155 PIPSTLYHLNQLSTLYLAYN 174
+P+ +L L + L+YN
Sbjct: 139 KLPAYFSNLTNLVHVDLSYN 158
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 130/323 (40%), Gaps = 31/323 (9%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
S + VL+L++N+L P+ L L+ +N ++ P L L L LQ N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L + + TNLT LDL N + N KNL+ L L +N L+ T L
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 164 NQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNR 223
L L LA N ++ +E+ L +L LS N
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGNSS----------------------LRKLDLSSNP 182
Query: 224 LDGPIPPTIGNLTYLTSLDLSSNQ----LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT 279
L P + L +L L++ Q L+ L E+ N + +LSL N L+ T
Sbjct: 183 LKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTS-IQNLSLANNQLLATSEST 241
Query: 280 IGYL--TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQL 337
L TNLT L+L YN L+ L+ L++ +N++ P L +LR L
Sbjct: 242 FSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL 301
Query: 338 DLSHNFINGTIPSQLGKIPNVSE 360
L F ++ L PN+ +
Sbjct: 302 SLKRAFTKQSV--SLASHPNIDD 322
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
+PS I LNL +HN+L P + L LD N +S L P L L
Sbjct: 23 LPSNITVLNL------THNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS 323
L+L N L T + TNLT L+L N ++ N L L ++HN LS +
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 119/295 (40%), Gaps = 31/295 (10%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L N+L L P++ + L LD N +S P+ L L L L +N L+
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 157 PSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDE 216
T L+ L L N++ + P + + +
Sbjct: 90 DQTFVFCTNLTELDLMSNSI--------------------HKIKSNPFKNQKNLI----K 125
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNL--KYLDSLSLDRNNLIG 274
L LSHN L T L L L L+ N++ L E+ L L L L N L
Sbjct: 126 LDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKE 185
Query: 275 PIPPTIGYLTNLTSLNLGYNQLNSSIPPEL---MNCSQLQNLAVNHNSLSGSIPSEIGNL 331
P + L +L L QLN + +L ++ + +QNL++ +N L + S L
Sbjct: 186 FSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGL 245
Query: 332 --IHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFRVPGLKW 384
+L QLDLS+N ++ +P++ + + NN+ + P+S + + L++
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRY 300
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 43 LSRLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQG 101
L +L++LDL N + + E LR++ E+ LSYN F + L L L+
Sbjct: 404 LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR 463
Query: 102 NKLDG--LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT 153
L + PS L NLT LDLS N ++ + L+NL L +NNL
Sbjct: 464 VALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 141/356 (39%), Gaps = 59/356 (16%)
Query: 44 SRLKVLDLSYNRLTGTIP---SEIGSLRDLLELNLSYN-ILNGSIPLEFGNLKDLYDLRL 99
S L+ LDLS N L P IG L LL N N L + E N + +L L
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 100 QGNKLDGLIPSSIGNL--TNLTHLDLSLNQLSGRLPQEVGN-----LKNLVSLFLDNNNL 152
N+L S+ L TNLT LDLS N L +VGN L +L L L+ NN+
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNNL-----HDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 153 TGPIPSTLYHLNQLSTLYL--AYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGF 210
P + Y L+ L L L A+ L + +
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDF-----------------SFQW 327
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSN--QLSGLLPREVGNLKY--LDSLS 266
L L+ L + N + T L L L LS L L +L + L +L+
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 267 LDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPE-----------LMNCSQLQNLAV 315
L +N++ T +L L L+LG N++ + + ++ ++ L+
Sbjct: 388 LTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLST 447
Query: 316 NHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGV 371
+ +L S+ + + L+ +D+S PS + N++ +D+S NN++ +
Sbjct: 448 SSFALVPSLQRLMLRRVALKNVDIS--------PSPFRPLRNLTILDLSNNNIANI 495
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 123/318 (38%), Gaps = 45/318 (14%)
Query: 86 LEFGNLKDLYDLRLQGNKLDGLIP---SSIGNLTNLTHLDLSLN-QLSGRLPQEVGNLKN 141
LEF L L L N L P +IG L L + LN L+ +L E+ N +
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TS 223
Query: 142 LVSLFLDNNNLTGPIPSTLYHLN--QLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXX 199
+ +L L NN L ST L L+ L L+YNNL +VG
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL-----HDVGN------------- 265
Query: 200 XTGPIPSTIGFLNLLDELRLSHNRLDGPIPPT---IGNLTYLTSLDLSSNQLSGLLPR-- 254
+ +L L L L +N + P + + NL YL+ + Q L
Sbjct: 266 ------GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPN 319
Query: 255 ----EVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLG--YNQLNSSIPPELMNCS 308
LKYL+ L++D NN+ T L +L L+L + L + ++ +
Sbjct: 320 IDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLA 379
Query: 309 Q--LQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGK-IPNVSEVDVSK 365
L L + N +S L LR LDL N I + Q + + N+ E+ +S
Sbjct: 380 HSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSY 439
Query: 366 NNLSGVIPKSVFRVPGLK 383
N + S VP L+
Sbjct: 440 NKYLQLSTSSFALVPSLQ 457
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 122/284 (42%), Gaps = 45/284 (15%)
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
L +L L L GN++ + P + NL LT+L + N+++ + NL NL L+L+ +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 151 NLTGPIPSTLYHLNQLSTLYLAYN-NL--VGPLPKEVGXXXXXXXXXXXXXXXTGPIPST 207
N++ P L +L + +L L N NL + PL G +
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTE--------SKVKDV 170
Query: 208 IGFLNLLD--ELRLSHNRLDGPIPPT--------------------IGNLTYLTSLDLSS 245
NL D L L++N+++ P + N T L SL + +
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGN 230
Query: 246 NQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
N+++ L P + NL L L + N I I + LT L LN+G NQ+ S L
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQ-ISDINA-VKDLTKLKXLNVGSNQI--SDISVLN 284
Query: 306 NCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIP 349
N SQL +L +N+N L IG L +L L LS N I P
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 26/159 (16%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ L L L+YN++ P + SL L N + P+ N L L++ N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANXTRLNSLKIGNN 231
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSG--------RLPQ-EVG-----------NLKNL 142
K+ L P + NL+ LT L++ NQ+S +L VG NL L
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQL 289
Query: 143 VSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLP 181
SLFL+NN L + L L+TL+L+ N++ P
Sbjct: 290 NSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 280 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDL 339
I YLTNL LNL NQ+ + I P L N +L NL + N ++ S + NL +LR+L L
Sbjct: 62 IEYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYL 117
Query: 340 SHNFINGTIP 349
+ + I+ P
Sbjct: 118 NEDNISDISP 127
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETE--ELAF 525
R + E+ A+++F K +G GG+G VY+ +L+ G +VA+K+L T+ EL F
Sbjct: 19 RFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQF 74
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 50 DLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG----SIP-LEFGNLKDLYDLRLQGNKL 104
++ Y L G +I +L++L NL+Y IL G S+P F L +L +L L N+L
Sbjct: 64 NVRYLALGGNKLHDISALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 105 DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L LTNLT+L L NQL LP+ V L NL L LDNN L L
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 164 NQLSTLYLAYNNL 176
QL L L N L
Sbjct: 181 TQLKQLSLNDNQL 193
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 38 SETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDL 97
S L+ L L L+ N+L L +L EL L N L F L +L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 98 RLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPI 156
L N+L L LTNLT LDL NQL LP+ V L L L L++N L
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 157 PSTLYHLNQLSTLYLAYN 174
L L+ ++L N
Sbjct: 198 DGVFDRLTSLTHIWLLNN 215
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 231 TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLN 290
+ LT LT L L+ NQL L L L L L N L LTNLT L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 291 LGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPS 350
L +NQL S + L L +++N L L L+QL L+ N
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN-------- 191
Query: 351 QLGKIPN 357
QL +P+
Sbjct: 192 QLKSVPD 198
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 69/196 (35%), Gaps = 52/196 (26%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
L L GNKL + S++ LTNLT+L L+ NQL LP V L NL L L N L
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSL 124
Query: 156 IPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLD 215
L L+ LYL
Sbjct: 125 PDGVFDKLTNLTYLYLY------------------------------------------- 141
Query: 216 ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGP 275
HN+L LT LT LDL +NQL L L L LSL+ N L
Sbjct: 142 -----HNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 276 IPPTIGYLTNLTSLNL 291
LT+LT + L
Sbjct: 197 PDGVFDRLTSLTHIWL 212
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL 265
S + L L L L+ N+L LT L L L NQL L L L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 266 SLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
L N L LTNLT L+L NQL S +QL+ L++N N L S+P
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVP 197
Query: 326 SEI 328
+
Sbjct: 198 DGV 200
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
LTNLT L L NQL S + L+ L + N L L +L L L HN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 343 FINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
+ K+ N++ +D+ N L +P+ VF
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVF 177
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 254 REVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNL 313
+E+ NL YL L N L LTNL L L NQL S + L L
Sbjct: 82 KELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 314 AVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
+ HN L L +L +LDL +N + K+ + ++ ++ N L V P
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV-P 197
Query: 374 KSVF-RVPGLK--WSENN 388
VF R+ L W NN
Sbjct: 198 DGVFDRLTSLTHIWLLNN 215
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 54/139 (38%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
S +K DLS +++ + S DL +L L+ N +N F L L L L N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L + NL L LDLS N + Q L NL L LD N L L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 164 NQLSTLYLAYNNLVGPLPK 182
L ++L N P+
Sbjct: 395 TSLQKIWLHTNPWDCSCPR 413
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 255 EVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLA 314
E +K D L ++ + + + T+L L L N++N + L L
Sbjct: 273 EASGVKTCD---LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 315 VNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIP 373
++ N L GSI S + NL L LDLS+N I +PN+ E+ + N L V P
Sbjct: 330 LSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-P 387
Query: 374 KSVF-RVPGLK--WSENN-LEVENPVI-------SENAPPPQTQHFKGNKGKNQKIVTPL 422
+F R+ L+ W N + P I ++N+ Q GK P+
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK------PV 441
Query: 423 VTIILPMVAFLA 434
+II P A L
Sbjct: 442 RSIICPTSASLV 453
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268
G +LL +L LS N L NL L LDLS N + L + L L L+LD
Sbjct: 321 GLTHLL-KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 269 RNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 301
N L LT+L + L N + S P
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 50 DLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG----SIP-LEFGNLKDLYDLRLQGNKL 104
++ Y L G +I +L++L NL+Y IL G S+P F L +L +L L N+L
Sbjct: 64 NVRYLALGGNKLHDISALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 105 DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L LTNLT+L+L+ NQL LP+ V L NL L L N L L
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 164 NQLSTLYLAYNNLVGPLPKEV 184
QL L L Y N + +P V
Sbjct: 181 TQLKDLRL-YQNQLKSVPDGV 200
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
Query: 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL 265
S + L L L L+ N+L LT L L L NQL L L L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 266 SLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
+L N L LTNLT L+L YNQL S +QL++L + N L S+P
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197
Query: 326 SEI-GNLIHLRQLDLSHNFINGTIP 349
+ L L+ + L N + T P
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 38 SETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDL 97
S L+ L L L+ N+L L +L EL L N L F L +L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 98 RLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPI 156
L N+L L LTNLT LDLS NQL LP+ V L L L L N L
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 157 PSTLYHLNQLSTLYLAYN 174
L L ++L N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
LTNLT L L NQL S + L+ L + N L L +L L+L+HN
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 343 FINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
+ K+ N++E+D+S N L +P+ VF
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVF 177
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 28/161 (17%)
Query: 231 TIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLN 290
+ LT LT L L+ NQL L L L L L N L LTNLT LN
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 291 LGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPS 350
L +NQL S+P + + L +L +LDLS+N +
Sbjct: 140 LAHNQL-QSLPKGVFD-----------------------KLTNLTELDLSYNQLQSLPEG 175
Query: 351 QLGKIPNVSEVDVSKNNLSGVIPKSVF-RVPGLK--WSENN 388
K+ + ++ + +N L V P VF R+ L+ W +N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDN 215
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 48/119 (40%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ LK L L N+L L +L LNL++N L F L +L +L L N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
+L L LT L L L NQL L +L ++L +N P Y
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 226
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKL--HRSETEELAF 525
R + E+ A+++F K +G GG+G VY+ +L+ G +VA+K+L R + EL F
Sbjct: 27 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQF 82
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 47 KVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRLQGNKLD 105
++L L N++T P SL +L EL L N L G++P+ F +L L L L N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQ 165
L + L +L L + N+L+ LP+ + L +L L LD N L IP + ++
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAF--DR 157
Query: 166 LSTLYLAY 173
LS+L AY
Sbjct: 158 LSSLTHAY 165
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 214 LDELRLSHNRLDGPIPPTI-GNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
L EL L N+L G +P + +LT LT LDL +NQL+ L L +L L + N L
Sbjct: 66 LKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 273 IGPIPPTIGYLTNLTSLNLGYNQLNS 298
+P I LT+LT L L NQL S
Sbjct: 125 T-ELPRGIERLTHLTHLALDQNQLKS 149
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLV 143
P F +L +L +L L N+L L +LT LT LDL NQL+ LP V L +L
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLK 115
Query: 144 SLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
LF+ N LT +P + L L+ L L N L
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 145 LFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPI 204
L+L +N +T P L L LYL N L G LP V +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 205 PSTI-GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL 251
PS + L L EL + N+L +P I LT+LT L L NQL +
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 265 LSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSI 324
L L N + P L NL L LG NQL + + +QL L + N L+ +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103
Query: 325 PSEI-GNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
PS + L+HL++L + N + +P + ++ +++ + + +N L IP F
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAF 155
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
+ EL LS N L I L + +LDL+S Q++ + P + L L L LD N I
Sbjct: 93 ITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ-I 147
Query: 274 GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIH 333
I P G LTNL L++G NQ+N P L N S+L L + N +S P + +L +
Sbjct: 148 TNISPLAG-LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPN 202
Query: 334 LRQLDLSHNFINGTIP 349
L ++ L N I+ P
Sbjct: 203 LIEVHLKDNQISDVSP 218
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQG 101
L+++ L+LS N L S I L+ + L+L+ + PL NL+ LY L
Sbjct: 90 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY---LDL 144
Query: 102 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
N++ + P + LTNL +L + NQ++ P + NL L +L D+N ++ P L
Sbjct: 145 NQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LA 198
Query: 162 HLNQLSTLYLAYNNL--VGPL 180
L L ++L N + V PL
Sbjct: 199 SLPNLIEVHLKDNQISDVSPL 219
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 36/266 (13%)
Query: 108 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLS 167
+P I T L LDL N +S + L++L +L L NN ++ L +L
Sbjct: 48 VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 168 TLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGP 227
LY++ N+LV P +PS+ L ELR+ NR+
Sbjct: 106 KLYISKNHLVEIPPN---------------------LPSS------LVELRIHDNRIRKV 138
Query: 228 IPPTIGNLTYLTSLDLSSNQL--SGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTN 285
L + +++ N L SG P LK L+ L + L G IP +
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDLP--ET 194
Query: 286 LTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
L L+L +N++ + +L+ S+L L + HN + + L LR+L L +N ++
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 346 GTIPSQLGKIPNVSEVDVSKNNLSGV 371
+P+ L + + V + NN++ V
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
L++L L+L YN+L L +L L L+ N L S+PL F +L L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
GN+L L LT L L L+ NQL L NL +L L N L
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 161 YHLNQLSTLYLAYNNL 176
L +L T+ L N
Sbjct: 176 DRLGKLQTITLFGNQF 191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 230 PTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSL 289
T LT LT L+L NQL L +L L +L L N L +LT L L
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 290 NLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS-EIGNLIHLRQLDLSHNFINGTI 348
LG NQL S ++L+ L +N N L SIP+ L +L+ L LS N + ++
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SV 170
Query: 349 P----SQLGKIPNVS 359
P +LGK+ ++
Sbjct: 171 PHGAFDRLGKLQTIT 185
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL 265
+T L L L L +N+L +LT L +L L++NQL+ L +L LD L
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 266 SLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
L N L LT L L L NQL S + LQ L+++ N L S+P
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IP++T + LDL L + L L LNL YN L F +L +L
Sbjct: 33 IPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTG 154
L L N+L L +LT L L L NQL LP V L L L L+ N L
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 155 PIPSTLYHLNQLSTLYLAYNNL 176
L L TL L+ N L
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 263 DSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322
+ L L L T LT LT LNL YNQL + + ++L L + +N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 323 SIPSEIGNLIHLRQLD---LSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
S+P +G HL QLD L N + ++ + E+ ++ N L IP F
Sbjct: 97 SLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAF 151
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 88 FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147
FG L L L L+ N+L G+ P++ +++ L L N++ + L L +L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 148 DNNNLTGPIPSTLYHLNQLSTLYLAYN 174
+N ++ +P + HLN L++L LA N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 208 IGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
G L L +L L N+L G P +++ L L N++ + + L L +L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 300
N + +P + +L +LTSLNL N N +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 58 GTIPSE--IGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNL 115
G I S+ G L L++L L N L G P F + +L+L NK+ + L
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 116 TNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
L L+L NQ+S +P +L +L SL L +N
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE-FGNLKDLYDLRLQ 100
L++L L+L YN+L L +L L L+ N L S+PL F +L L L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 101 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTL 160
GN+L L LT L L L+ NQL L NL +L L N L
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 161 YHLNQLSTLYLAYNNL 176
L +L T+ L N
Sbjct: 176 DRLGKLQTITLFGNQF 191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 230 PTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSL 289
T LT LT L+L NQL L +L L +L L N L +LT L L
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 290 NLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPS-EIGNLIHLRQLDLSHNFINGTI 348
LG NQL S ++L+ L +N N L SIP+ L +L+ L LS N + ++
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SV 170
Query: 349 P----SQLGKIPNVS 359
P +LGK+ ++
Sbjct: 171 PHGAFDRLGKLQTIT 185
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 206 STIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSL 265
+T L L L L +N+L +LT L +L L++NQL+ L +L LD L
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 266 SLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
L N L LT L L L NQL S + LQ L+++ N L S+P
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IP++T + LDL L + L L LNL YN L F +L +L
Sbjct: 33 IPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTG 154
L L N+L L +LT L L L NQL LP V L L L L+ N L
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 155 PIPSTLYHLNQLSTLYLAYNNL 176
L L TL L+ N L
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 263 DSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG 322
+ L L L T LT LT LNL YNQL + + ++L L + +N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 323 SIPSEIGNLIHLRQLD---LSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
S+P +G HL QLD L N + ++ + E+ ++ N L IP F
Sbjct: 97 SLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAF 151
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
+P+ I LNL +HN+L + LTSLD+ N +S L P L L
Sbjct: 28 LPTNITVLNL------THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS 323
L+L N L T + TNLT L+L N + + L L ++HN LS +
Sbjct: 82 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 128/323 (39%), Gaps = 31/323 (9%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
+ + VL+L++N+L + L L++ +N ++ P L L L LQ N+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L L + TNLT L L N + KNL++L L +N L+ T L
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 149
Query: 164 NQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNR 223
L L L+ N + +E+ L +L LS N+
Sbjct: 150 ENLQELLLSNNKIQALKSEELDIFANSS----------------------LKKLELSSNQ 187
Query: 224 LDGPIPPTIGNLTYLTSLDLSSNQ----LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT 279
+ P + L L L++ Q L+ L E+ N + +LSL + L T
Sbjct: 188 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTT 246
Query: 280 IGYL--TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQL 337
L TNLT L+L YN LN QL+ + +N++ + L ++R L
Sbjct: 247 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 306
Query: 338 DLSHNFINGTIPSQLGKIPNVSE 360
+L +F +I L +P + +
Sbjct: 307 NLKRSFTKQSI--SLASLPKIDD 327
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 284 TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNF 343
TN+T LNL +NQL SQL +L V N++S P L L+ L+L HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 344 INGTIPSQLGKIPNVSEVDVSKNNLSGV 371
++ N++E+ + N++ +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 108/293 (36%), Gaps = 43/293 (14%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L N+L L ++ + LT LD+ N +S P+ L L L L +N L+
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 157 PSTLYHLNQLSTLYLAYNNLV----GPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLN 212
T L+ L+L N++ P K+
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN--------------------------- 127
Query: 213 LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK--YLDSLSLDRN 270
L L LSHN L T L L L LS+N++ L E+ L L L N
Sbjct: 128 -LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 186
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
+ P + L L L QL S+ +L C +L N ++ + SLS S S N
Sbjct: 187 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL--CLELANTSIRNLSLSNSQLSTTSN 244
Query: 331 -------LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSV 376
+L LDLS+N +N +P + + NN+ + S+
Sbjct: 245 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 297
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 35 RIPSETGA-LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93
R+P+ S+L LD+ +N ++ P L L LNL +N L+ F +
Sbjct: 44 RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 103
Query: 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 130
L +L L N + + + NL LDLS N LS
Sbjct: 104 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN-LKNLVSLFLDNNNL 152
+GN+L L P + L L L+ NQL+ LP + N L+NL +L L N+L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268
G L +L L LSHN+L +P L LT LD+S N+L+ L + L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 269 RNNLIGPIPPTIGYLT---NLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSL 320
N L +PP G LT L L+L NQL + +P L+N L L + NSL
Sbjct: 133 GNEL-KTLPP--GLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN-LKNLVSLFLDNNNL 152
+GN+L L P + L L L+ NQL+ LP + N L+NL +L L N+L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268
G L +L L LSHN+L +P L LT LD+S N+L+ L + L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 269 RNNLIGPIPPTIGYLT---NLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSL 320
N L +PP G LT L L+L NQL + +P L+N L L + NSL
Sbjct: 133 GNEL-KTLPP--GLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
+P+ I LNL +HN+L + LTSLD+ N +S L P L L
Sbjct: 23 LPTNITVLNL------THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS 323
L+L N L T + TNLT L+L N + + L L ++HN LS +
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 284 TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNF 343
TN+T LNL +NQL SQL +L V N++S P L L+ L+L HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 344 INGTIPSQLGKIPNVSEVDVSKNNLSGV 371
++ N++E+ + N++ +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 128/323 (39%), Gaps = 31/323 (9%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
+ + VL+L++N+L + L L++ +N ++ P L L L LQ N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L L + TNLT L L N + KNL++L L +N L+ T L
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 164 NQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNR 223
L L L+ N + +E+ L +L LS N+
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSS----------------------LKKLELSSNQ 182
Query: 224 LDGPIPPTIGNLTYLTSLDLSSNQ----LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT 279
+ P + L L L++ Q L+ L E+ N + +LSL + L T
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTT 241
Query: 280 IGYL--TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQL 337
L TNLT L+L YN LN QL+ + +N++ + L ++R L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301
Query: 338 DLSHNFINGTIPSQLGKIPNVSE 360
+L +F +I L +P + +
Sbjct: 302 NLKRSFTKQSI--SLASLPKIDD 322
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 35 RIPSETGA-LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93
R+P+ S+L LD+ +N ++ P L L LNL +N L+ F +
Sbjct: 39 RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98
Query: 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 130
L +L L N + + + NL LDLS N LS
Sbjct: 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 108/293 (36%), Gaps = 43/293 (14%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L N+L L ++ + LT LD+ N +S P+ L L L L +N L+
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 157 PSTLYHLNQLSTLYLAYNNLV----GPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLN 212
T L+ L+L N++ P K+
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN--------------------------- 122
Query: 213 LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK--YLDSLSLDRN 270
L L LSHN L T L L L LS+N++ L E+ L L L N
Sbjct: 123 -LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
+ P + L L L QL S+ +L C +L N ++ + SLS S S N
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL--CLELANTSIRNLSLSNSQLSTTSN 239
Query: 331 -------LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSV 376
+L LDLS+N +N +P + + NN+ + S+
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
+P+ I LNL +HN+L + LTSLD+ N +S L P L L
Sbjct: 33 LPTNITVLNL------THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS 323
L+L N L T + TNLT L+L N + + L L ++HN LS +
Sbjct: 87 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 128/323 (39%), Gaps = 31/323 (9%)
Query: 44 SRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
+ + VL+L++N+L + L L++ +N ++ P L L L LQ N+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 104 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163
L L + TNLT L L N + KNL++L L +N L+ T L
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 154
Query: 164 NQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNR 223
L L L+ N + +E+ L +L LS N+
Sbjct: 155 ENLQELLLSNNKIQALKSEELDIFANSS----------------------LKKLELSSNQ 192
Query: 224 LDGPIPPTIGNLTYLTSLDLSSNQ----LSGLLPREVGNLKYLDSLSLDRNNLIGPIPPT 279
+ P + L L L++ Q L+ L E+ N + +LSL + L T
Sbjct: 193 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTT 251
Query: 280 IGYL--TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQL 337
L TNLT L+L YN LN QL+ + +N++ + L ++R L
Sbjct: 252 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 311
Query: 338 DLSHNFINGTIPSQLGKIPNVSE 360
+L +F +I L +P + +
Sbjct: 312 NLKRSFTKQSI--SLASLPKIDD 332
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 284 TNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHNF 343
TN+T LNL +NQL SQL +L V N++S P L L+ L+L HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 344 INGTIPSQLGKIPNVSEVDVSKNNLSGV 371
++ N++E+ + N++ +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 35 RIPSETGA-LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKD 93
R+P+ S+L LD+ +N ++ P L L LNL +N L+ F +
Sbjct: 49 RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 108
Query: 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 130
L +L L N + + + NL LDLS N LS
Sbjct: 109 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 108/293 (36%), Gaps = 43/293 (14%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPI 156
L L N+L L ++ + LT LD+ N +S P+ L L L L +N L+
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 157 PSTLYHLNQLSTLYLAYNNLV----GPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLN 212
T L+ L+L N++ P K+
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN--------------------------- 132
Query: 213 LLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLK--YLDSLSLDRN 270
L L LSHN L T L L L LS+N++ L E+ L L L N
Sbjct: 133 -LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 191
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
+ P + L L L QL S+ +L C +L N ++ + SLS S S N
Sbjct: 192 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL--CLELANTSIRNLSLSNSQLSTTSN 249
Query: 331 -------LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSV 376
+L LDLS+N +N +P + + NN+ + S+
Sbjct: 250 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 302
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN-LKNLVSLFLDNNNL 152
+GN+L L P + L L L+ NQL+ LP + N L+NL +L L N+L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268
G L +L L LSHN+L +P L LT LD+S N+L+ L + L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL- 131
Query: 269 RNNLIGPIPPTIGYLT---NLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSL 320
+ N + +PP G LT L L+L NQL + +P L+N L L + NSL
Sbjct: 132 KGNELKTLPP--GLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN-LKNLVSLFLDNNNL 152
+GN+L L P + L L L+ NQL+ LP + N L+NL +L L N+L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268
G L +L L LSHN+L +P L LT LD+S N+L+ L + L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL- 131
Query: 269 RNNLIGPIPPTIGYLT---NLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSL 320
+ N + +PP G LT L L+L NQL + +P L+N L L + NSL
Sbjct: 132 KGNELKTLPP--GLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 42 ALSRLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
L +L+ LD ++ L S SLR+L+ L++S+ + F L L L++
Sbjct: 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 477
Query: 101 GNKL-DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
GN + +P L NLT LDLS QL P +L +L L + +NN
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNL 213
LN L L + N+++ +E+ PS++ FLNL
Sbjct: 538 YKCLNSLQVLDYSLNHIMTSKKQELQH-----------------FPSSLAFLNL 574
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGL 251
IG L L EL ++HN + +P NLT L LDLSSN++ +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 22/217 (10%)
Query: 202 GPIPSTIGFLNL--LDELRLSHNRL----DGPIPPTIGNLTYLTSLDLSSNQLSGLLPRE 255
G I + FL L L+ L H+ L + + ++ NL YL D+S
Sbjct: 408 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL---DISHTHTRVAFNGI 464
Query: 256 VGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLA 314
L L+ L + N+ P I L NLT L+L QL P + S LQ L
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 315 VNHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIP-NVSEVDVSKNNLSGVIP 373
++HN+ L L+ LD S N I + +L P +++ +++++N+ +
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584
Query: 374 KSVFRVPGLKWSENN----LEVENPVISENAPPPQTQ 406
F L+W ++ +EVE E A P Q
Sbjct: 585 HQSF----LQWIKDQRQLLVEVER---MECATPSDKQ 614
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 89 GNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 128
G+LK L +L + N + +P NLTNL HLDLS N++
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 64 IGSLRDLLELNLSYNILNG-SIPLEFGNLKDLYDLRLQGNKLDGLIPSSI 112
IG L+ L ELN+++N++ +P F NL +L L L NK+ + + +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELN 74
F +L ++ G F +P L L LDLS +L P+ SL L LN
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 75 LSYN 78
+S+N
Sbjct: 525 MSHN 528
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 140/345 (40%), Gaps = 46/345 (13%)
Query: 70 LLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 129
L EL+L+ L +P L L L L NK + L S N +LTHL + N +
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--T 336
Query: 130 GRLPQEVG---NLKNLVSLFLDNNNL--TGPIPSTLYHLNQLSTLYLAYN---NLVGPLP 181
RL G NL+NL L L ++++ + L +L+ L +L L+YN +L
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 182 KEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSL 241
KE P L+LL L LSH+ LD L L L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSP--FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Query: 242 DLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 301
+L N P+ GN++ +SL T+G L L L + L+S
Sbjct: 455 NLQGNH----FPK--GNIQKTNSLQ------------TLGRLEILV---LSFCDLSSIDQ 493
Query: 302 PELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLR--QLDLSHNFINGTIPSQLGKIPNVS 359
+ + ++ ++HN L+ S I L HL+ L+L+ N I+ +PS L +
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTS---SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR 550
Query: 360 EVDVSKNNLSGVIPKSVFRVPGLKWSENN---LEVENPVISENAP 401
+++ +N L F L+W + N LE + EN P
Sbjct: 551 TINLRQNPLDCTCSNIYF----LEWYKENMQKLEDTEDTLCENPP 591
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 29/160 (18%)
Query: 45 RLKVLDLSYNRL-TGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN- 102
+L++LDL++ RL S +L L LNLS+++L+ S F L L L LQGN
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 103 ----------------KLDGLIPS----------SIGNLTNLTHLDLSLNQLSGRLPQEV 136
+L+ L+ S + +L + H+DLS N+L+ + +
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Query: 137 GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNL 176
+LK + L L +N+++ +PS L L+Q T+ L N L
Sbjct: 521 SHLKG-IYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETG--ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLE 72
F P L + G F G I L RL++L LS+ L+ SL+ +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 73 LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPS 110
++LS+N L S +LK +Y L L N + ++PS
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
++ L L +R T T L LDL++ L GL P + L L L L N+
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGL-PSGMKGLNLLKKLVLSVNHFD 311
Query: 274 GPIPPTIGYLTNLTSL----NLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGS--IPSE 327
+ +LT L N+ L +L N LQ L ++HN + S +
Sbjct: 312 QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN---LQTLDLSHNDIEASDCCSLQ 368
Query: 328 IGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
+ NL HL+ L+LSHN G + P + +D++ L P+S F+
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ 419
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSN----QLSGLLPREVGNL 259
+PS + LNLL +L LS N D + N LT L + N L ++GNL
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNL 349
Query: 260 KYLDSLSLDRNNLIGPIPPTIGY--LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNH 317
+ LD L N++ ++ L++L +LNL +N+ C QL+ L +
Sbjct: 350 QTLD---LSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAF 406
Query: 318 NSLSGSIP-SEIGNLIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLS-GVIPKS 375
L + P S NL L+ L+L++ F++ + L +P + +++ N+ G I K+
Sbjct: 407 TRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKT 466
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 42 ALSRLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
L +L+ LD ++ L S SLR+L+ L++S+ + F L L L++
Sbjct: 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 101 GNKL-DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
GN + +P L NLT LDLS QL P +L +L L + +NN
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNL 213
LN L L + N+++ +E+ PS++ FLNL
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQH-----------------FPSSLAFLNL 255
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 83/217 (38%), Gaps = 15/217 (6%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLS--GRLPQEVGNLKNLVSLFLDNNNLTG 154
L L+ NKL L LT LT L LS N LS G Q +L L L N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 91
Query: 155 PIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGF---- 210
+ S L QL L ++NL K++ + + F
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 211 --LNLLDELRLSHNRL-DGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
L+ L+ L+++ N + +P L LT LDLS QL L P +L L L++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 268 DRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPEL 304
NN L +L L+ N + +S EL
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 276 IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSG--SIPSEIGNLIH 333
+P L NLT L+L QL P + S LQ L ++HN+ + P + N
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--S 224
Query: 334 LRQLDLSHNFINGTIPSQLGKIP-NVSEVDVSKNNLSGVIPKSVFRVPGLKWSENN---- 388
L+ LD S N I + +L P +++ +++++N+ + F L+W ++
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF----LQWIKDQRQLL 280
Query: 389 LEVENPVISENAPPPQTQ 406
+EVE E A P Q
Sbjct: 281 VEVERM---ECATPSDKQ 295
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 20 NLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN 78
+L ++ G F +P L L LDLS +L P+ SL L LN+S+N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 92/235 (39%), Gaps = 57/235 (24%)
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNN 150
L +L L L N++ + P I L N+T L L+ N+L+ P + NLKNL LFLD N
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 120
Query: 151 NLTGPIPST--------------------LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXX 190
+ L HL QL +LYL N +
Sbjct: 121 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD------------ 168
Query: 191 XXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSG 250
+ + L LD L L N++ +P + LT L +L LS N +S
Sbjct: 169 --------------ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 212
Query: 251 LLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
L R + LK LD L L + I + +NL N N S + PE++
Sbjct: 213 L--RALAGLKNLDVLELFSQECLN---KPINHQSNLVVPNTVKNTDGSLVTPEII 262
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 42 ALSRLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
L +L+ LD ++ L S SLR+L+ L++S+ + F L L L++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 101 GNKL-DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
GN + +P L NLT LDLS QL P +L +L L + +NN
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 160 LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNL 213
LN L L + N+++ +E+ PS++ FLNL
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQH-----------------FPSSLAFLNL 550
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGL 251
IG L L EL ++HN + +P NLT L LDLSSN++ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 89 GNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSG 130
G+LK L +L + N + +P NLTNL HLDLS N++
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 26/219 (11%)
Query: 202 GPIPSTIGFLNL--LDELRLSHNRL----DGPIPPTIGNLTYLTSLDLSSNQLSGLLPRE 255
G I + FL L L+ L H+ L + + ++ NL YL D+S
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL---DISHTHTRVAFNGI 440
Query: 256 VGNLKYLDSLSLDRNNLIGPIPPTI-GYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLA 314
L L+ L + N+ P I L NLT L+L QL P + S LQ L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 315 VNHNSLSG--SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIP-NVSEVDVSKNNLSGV 371
++HN+ + P + N L+ LD S N I + +L P +++ +++++N+ +
Sbjct: 501 MSHNNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558
Query: 372 IPKSVFRVPGLKWSENN----LEVENPVISENAPPPQTQ 406
F L+W ++ +EVE E A P Q
Sbjct: 559 CEHQSF----LQWIKDQRQLLVEVER---MECATPSDKQ 590
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 64 IGSLRDLLELNLSYNILNG-SIPLEFGNLKDLYDLRLQGNKLDGLIPSSI 112
IG L+ L ELN+++N++ +P F NL +L L L NK+ + + +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELN 74
F +L ++ G F +P L L LDLS +L P+ SL L LN
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 75 LSYN 78
+S+N
Sbjct: 501 MSHN 504
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 45 RLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNK 103
+L++LD+++ L P S +L L LNLS+ +L+ S L+DL L LQGN
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS 459
Query: 104 -----------------LDGLIPSSIG----------NLTNLTHLDLSLNQLSGRLPQEV 136
L+ LI SS L N+ HLDLS N L+G +
Sbjct: 460 FQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDAL 519
Query: 137 GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYN 174
+LK L L + +NN+ P L L+Q S + L++N
Sbjct: 520 SHLKGLY-LNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 4/168 (2%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLI 273
++ + L +R T T + LDL++ L+GL P + + L L L+ N+
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGL-PSGIEGMNSLKKLVLNANSFD 313
Query: 274 GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM-NCSQLQNLAVNHNSLSGSIPS--EIGN 330
+L L + N + + LQ L ++H+ + S ++ N
Sbjct: 314 QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN 373
Query: 331 LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVFR 378
L HL+ L+LS+N G + P + +DV+ +L P S F+
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQ 421
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 55 RLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGN 114
R ++P+ I + +L L + N + P F +L L L L N+L L
Sbjct: 29 RSLASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDK 86
Query: 115 LTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAY 173
LT LTHL L +NQL +P V NLK+L ++L NN LY L + +
Sbjct: 87 LTKLTHLALHINQLKS-IPMGVFDNLKSLTHIYLFNNPWDCECSDILY----LKNWIVQH 141
Query: 174 NNLVGPL 180
++V PL
Sbjct: 142 ASIVNPL 148
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 37/83 (44%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
G + +VL L N++T P SL L LNL+ N L F L L L L
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 101 GNKLDGLIPSSIGNLTNLTHLDL 123
N+L + NL +LTH+ L
Sbjct: 97 INQLKSIPMGVFDNLKSLTHIYL 119
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Query: 42 ALSRLKVLDLSYNRLTGTIP-SEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQ 100
L +L+ LD ++ L S SLR+L+ L++S+ + F L L L++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 101 GNKL-DGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
GN + +P L NLT LDLS QL P +L +L L + +N L
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 160 LYHLNQLSTLYLAYNNLVGPLPK 182
L L ++L N P+
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCPR 536
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGL 251
IG L L EL ++HN + +P NLT L LDLSSN++ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 89 GNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 128
G+LK L +L + N + +P NLTNL HLDLS N++
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 64 IGSLRDLLELNLSYNILNG-SIPLEFGNLKDLYDLRLQGNKLDGL 107
IG L+ L ELN+++N++ +P F NL +L L L NK+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 36/95 (37%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELN 74
F +L ++ G F +P L L LDLS +L P+ SL L LN
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 75 LSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIP 109
++ N L F L L + L N D P
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 30/186 (16%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGA-LSRLKVLDLSYNRLTGTIPS----EIGSLR- 68
F P+L T ++ R + +P++ LS+L+ L L N + +IPS + SLR
Sbjct: 79 FNGLPSLNTLELFDNRLTT--VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRR 135
Query: 69 -DLLELN----LSYNILNGSIPLEF-----GNLKD---------LYDLRLQGNKLDGLIP 109
DL EL +S G + L + NLKD L +L L GN+LD + P
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 110 SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH-LNQLST 168
S LT+L L L Q++ +LK+L L L +NNL +P L+ L++L
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLER 254
Query: 169 LYLAYN 174
++L +N
Sbjct: 255 VHLNHN 260
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 7/190 (3%)
Query: 88 FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFL 147
F +L+ L L+L N + + + L +L L+L N+L+ Q L L L+L
Sbjct: 55 FKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 148 DNNNLTGPIPSTLYHLNQLSTLY---LAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPI 204
NN + IPS Y N++ +L L + + + I
Sbjct: 115 RNNPIES-IPS--YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI 171
Query: 205 PSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDS 264
P+ + L +EL LS NRLD P + LT L L L Q++ + +LK L+
Sbjct: 172 PNLTALVRL-EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 265 LSLDRNNLIG 274
L+L NNL+
Sbjct: 231 LNLSHNNLMS 240
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 8/167 (4%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGL---LPREVGNLKYLDSLSLDRN 270
L+ L L NRL L+ L L L +N + + V +L+ LD L R
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
I L NL LNLG L P L +L+ L ++ N L P
Sbjct: 145 EYISE--AAFEGLVNLRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 331 LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L LR+L L H + + + ++ E+++S NNL +P +F
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLF 246
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 82/214 (38%), Gaps = 55/214 (25%)
Query: 112 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST------------ 159
I L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 160 --------LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
L HL QL +LYL N + + + L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRL 155
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
LD L L N++ +P + LT L +L LS N +S L R + LK LD L L
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 211
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
+ I + +NL N N S + PE++
Sbjct: 212 CLN---KPINHQSNLVVPNTVKNTDGSLVTPEII 242
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 204 IPSTIGFLNLLDELRLSH----NRLDGPIPPTIGNLTYLTSLDLSSNQL--SGL--LPRE 255
+P++I LN L EL + L P+ T + + ++L S +L +G+ LP
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201
Query: 256 VGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAV 315
+ NL+ L SL + RN+ + + P I +L L L+L + PP + L+ L +
Sbjct: 202 IANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260
Query: 316 NHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIP 356
S ++P +I L L +LDL +PS + ++P
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGS---------LRDLLELNLSYNILNGSIPL 86
+P+ +L+RL+ L + +P + S L +L L L + + S+P
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200
Query: 87 EFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLF 146
NL++L L+++ + L L P +I +L L LDL P G L L
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 147 LDNNNLTGPIPSTLYHLNQLSTLYL 171
L + + +P ++ L QL L L
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 83/215 (38%), Gaps = 55/215 (25%)
Query: 112 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST------------ 159
I L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118
Query: 160 --------LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
L HL QL +LYL N + + + L
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRL 152
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
LD L L N++ +P + LT L +L LS N +S L R + LK LD L L
Sbjct: 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 306
+ I + +NL N N S + PE+++
Sbjct: 209 CLN---KPINHQSNLVVPNTVKNTDGSLVTPEIIS 240
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 30/186 (16%)
Query: 15 FTCFPNLVTFRIWGTRFLSGRIPSETGA-LSRLKVLDLSYNRLTGTIPS----EIGSLR- 68
F P+L T ++ R + +P++ LS+L+ L L N + +IPS + SLR
Sbjct: 79 FNGLPSLNTLELFDNRLTT--VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRR 135
Query: 69 -DLLELN----LSYNILNGSIPLEF-----GNLKD---------LYDLRLQGNKLDGLIP 109
DL EL +S G + L + NLKD L +L L GN+LD + P
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 110 SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYH-LNQLST 168
S LT+L L L Q++ +LK+L L L +NNL +P L+ L++L
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLER 254
Query: 169 LYLAYN 174
++L +N
Sbjct: 255 VHLNHN 260
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 90/217 (41%), Gaps = 31/217 (14%)
Query: 73 LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 132
LNL N + F +L+ L L+L N + + + L +L L+L N+L+
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 133 PQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTL------------YL---AYNNLV 177
Q L L L+L NN + IPS Y N++ +L Y+ A+ LV
Sbjct: 100 TQAFEYLSKLRELWLRNNPIES-IPS--YAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 178 GPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTY 237
+G IP+ + L +EL LS NRLD P + LT
Sbjct: 157 NLRYLNLGMCNLKD------------IPNLTALVRL-EELELSGNRLDLIRPGSFQGLTS 203
Query: 238 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG 274
L L L Q++ + +LK L+ L+L NNL+
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 8/167 (4%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLP---REVGNLKYLDSLSLDRN 270
L+ L L NRL L+ L L L +N + + V +L+ LD L R
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGN 330
I L NL LNLG L P L +L+ L ++ N L P
Sbjct: 145 EYISE--AAFEGLVNLRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 331 LIHLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L LR+L L H + + + ++ E+++S NNL +P +F
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLF 246
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 88 FGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLF 146
F L L L L GNKL L LT+LT+L+LS NQL LP V L L L
Sbjct: 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELA 106
Query: 147 LDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV 184
L+ N L L QL L L Y N + +P V
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGV 143
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
T LDL +N L L L L L L N L LT+LT LNL NQL S
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 299 SIPPELMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHN 342
+QL+ LA+N N L S+P + L L+ L L N
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 47/115 (40%)
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L L +L L N+L LT LT L+LS+NQL L L L L+L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIP 325
L LT L L L NQL S + LQ + ++ N + P
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 52/145 (35%), Gaps = 2/145 (1%)
Query: 31 FLSGRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGN 90
+ GR TG ++ LDL N L L L +L L N L F
Sbjct: 15 YSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74
Query: 91 LKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDN 149
L L L L N+L L LT L L L+ NQL LP V L L L L
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQ 133
Query: 150 NNLTGPIPSTLYHLNQLSTLYLAYN 174
N L L L ++L N
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 44/119 (36%)
Query: 43 LSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGN 102
L+ L L L N+L L L LNLS N L F L L +L L N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 103 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
+L L LT L L L NQL L +L ++L +N P Y
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 169
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 35/166 (21%)
Query: 35 RIPSET-GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG-SIPLEFGNLK 92
RI +T A + L+ L LS NRLT S I SL N+SYN+L+ +IP+ L
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL---FHANVSYNLLSTLAIPIAVEELD 217
Query: 93 ---------------DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG 137
+L L+LQ N L + + N L +DLS N+L +
Sbjct: 218 ASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275
Query: 138 NLKNLVSLFLDNNNLTG------PIPSTLYHLNQLSTLYLAYNNLV 177
++ L L++ NN L PIP+ L L L++N+L+
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHLL 314
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 37/190 (19%)
Query: 207 TIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLDSL 265
+ + + +L + N + P N+ LT L L N LS L PR + N L +L
Sbjct: 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTL 152
Query: 266 SLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS---SIPPELMNCSQLQNLAVNHNSLSG 322
S+ NNL T T+L +L L N+L S+ P L + + V++N LS
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN------VSYNLLST 206
Query: 323 -SIPSEIGNLIHLRQLDLSHNFING-------------------TIPSQLGKIPNVSEVD 362
+IP I + +LD SHN IN T + L P + EVD
Sbjct: 207 LAIP------IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD 260
Query: 363 VSKNNLSGVI 372
+S N L ++
Sbjct: 261 LSYNELEKIM 270
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 113/286 (39%), Gaps = 48/286 (16%)
Query: 72 ELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 131
+L + +N + P F N+ L L L+ N L L N LT L +S N L
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162
Query: 132 LPQEVGNLKNLVSLFLDNNNLT----GPIPSTLYHLNQLSTLYLAYN---NLVGPLPKEV 184
+L +L L +N LT IPS L+H N ++YN L P+ E
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-LFHAN------VSYNLLSTLAIPIAVE- 214
Query: 185 GXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTY--LTSLD 242
GP+ + L +L HN L T L Y L +D
Sbjct: 215 ----ELDASHNSINVVRGPVNVELTIL------KLQHNNLTD----TAWLLNYPGLVEVD 260
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG------PIPPTIGYLTNLTSLNLGYNQL 296
LS N+L ++ ++ L+ L + N L+ PIP L L+L +N L
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-------TLKVLDLSHNHL 313
Query: 297 NSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
+ +L+NL ++HNS+ + ++ L+ L LSHN
Sbjct: 314 -LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 355
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 35/166 (21%)
Query: 35 RIPSET-GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG-SIPLEFGNLK 92
RI +T A + L+ L LS NRLT S I SL N+SYN+L+ +IP+ L
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL---FHANVSYNLLSTLAIPIAVEELD 211
Query: 93 ---------------DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG 137
+L L+LQ N L + + N L +DLS N+L +
Sbjct: 212 ASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 138 NLKNLVSLFLDNNNLTG------PIPSTLYHLNQLSTLYLAYNNLV 177
++ L L++ NN L PIP+ L L L++N+L+
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHLL 308
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 35/200 (17%)
Query: 207 TIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV-GNLKYLDSL 265
+ + + +L + N + P N+ LT L L N LS L PR + N L +L
Sbjct: 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTL 146
Query: 266 SLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS---SIPPELMNCSQLQNLAVNHNSLSG 322
S+ NNL T T+L +L L N+L S+ P L H ++S
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF-----------HANVSY 195
Query: 323 SIPSEIGNLIHLRQLDLSHNFING-------------------TIPSQLGKIPNVSEVDV 363
++ S + I + +LD SHN IN T + L P + EVD+
Sbjct: 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDL 255
Query: 364 SKNNLSGVIPKSVFRVPGLK 383
S N L ++ ++ L+
Sbjct: 256 SYNELEKIMYHPFVKMQRLE 275
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 113/286 (39%), Gaps = 48/286 (16%)
Query: 72 ELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 131
+L + +N + P F N+ L L L+ N L L N LT L +S N L
Sbjct: 97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156
Query: 132 LPQEVGNLKNLVSLFLDNNNLT----GPIPSTLYHLNQLSTLYLAYN---NLVGPLPKEV 184
+L +L L +N LT IPS L+H N ++YN L P+ E
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPS-LFHAN------VSYNLLSTLAIPIAVE- 208
Query: 185 GXXXXXXXXXXXXXXXTGPIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTY--LTSLD 242
GP+ + L +L HN L T L Y L +D
Sbjct: 209 ----ELDASHNSINVVRGPVNVELTIL------KLQHNNLTD----TAWLLNYPGLVEVD 254
Query: 243 LSSNQLSGLLPREVGNLKYLDSLSLDRNNLIG------PIPPTIGYLTNLTSLNLGYNQL 296
LS N+L ++ ++ L+ L + N L+ PIP L L+L +N L
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP-------TLKVLDLSHNHL 307
Query: 297 NSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
+ +L+NL ++HNS+ + ++ L+ L LSHN
Sbjct: 308 -LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 349
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 82/214 (38%), Gaps = 55/214 (25%)
Query: 112 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST------------ 159
I L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 160 --------LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
L HL QL +LYL N + + + L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRL 155
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
LD L L N++ +P + LT L +L LS N +S L R + LK LD L L
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 211
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
+ I + +NL N N S + PE++
Sbjct: 212 CLN---KPINHQSNLVVPNTVKNTDGSLVTPEII 242
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 82/214 (38%), Gaps = 55/214 (25%)
Query: 112 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST------------ 159
I L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 119
Query: 160 --------LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
L HL QL +LYL N + + + L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRL 153
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNN 271
LD L L N++ +P + LT L +L LS N +S L R + LK LD L L
Sbjct: 154 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 209
Query: 272 LIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
+ I + +NL N N S + PE++
Sbjct: 210 CLN---KPINHQSNLVVPNTVKNTDGSLVTPEII 240
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 491 IGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
+G G YG VY+A+ S GR+VALK++ +E
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE 60
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 491 IGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
+G G YG VY+A+ S GR+VALK++ +E
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE 60
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 260 KYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHN 318
K L L N L G +P G L SLNL YNQ+ + IP Q++NL+ HN
Sbjct: 330 KKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHN 387
Query: 319 SLSGSIPS--EIGNLIHLRQLDLSHNFINGTIPSQ----LGKIP----NVSEVDVSKNNL 368
L IP+ + ++ +D S+N I G++ + L P NVS +++S N +
Sbjct: 388 KLK-YIPNIFDAKSVSVXSAIDFSYNEI-GSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Query: 369 SGVIPKSVF 377
S PK +F
Sbjct: 446 SK-FPKELF 453
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 84/215 (39%), Gaps = 57/215 (26%)
Query: 112 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST------------ 159
I L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 59 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 116
Query: 160 --------LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
L HL QL +LYL N + + + L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRL 150
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL-DRN 270
LD L L N++ +P + LT L +L LS N +S L R + LK LD L L +
Sbjct: 151 TKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHISDL--RALCGLKNLDVLELFSQE 206
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
L P I + +NL N N S + PE++
Sbjct: 207 ALNKP----INHQSNLVVPNTVKNTDGSLVTPEII 237
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKK 514
R+ ++ +AT +F K+ IG G +G VY+ L G VALK+
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 472 RITFEEMIQATEDFHIKYCIGTGGYGSVYRAQLSSGRVVALKK 514
R+ ++ +AT +F K+ IG G +G VY+ L G VALK+
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 58 GTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTN 117
++P+ I + + L LN N + P F +L +L L NKL + LT
Sbjct: 25 ASVPAGIPTDKQRLWLN--NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 118 LTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLS 167
LT LDL+ N L NLK+L ++L NN +Y N ++
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 60 IPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLT 119
PS+ + L+ NI S+P G D L L N++ L P +L NL
Sbjct: 6 CPSQCSCDQTLVNCQ---NIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQ 60
Query: 120 HLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNN 175
L + N+L+ L L L L++N+L +L L+ +YL YNN
Sbjct: 61 QLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL-YNN 115
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 29/151 (19%)
Query: 4 NGNAAELSQLNFT-CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPS 62
N + AEL++L P L T + + S +P L L VLD+S+NRLT ++P
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLT-SLP- 116
Query: 63 EIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122
+G+LR L G L++LY L+GN+L L P + L L
Sbjct: 117 -LGALRGL------------------GELQELY---LKGNELKTLPPGLLTPTPKLEKLS 154
Query: 123 LSLNQLSGRLPQEVGN-LKNLVSLFLDNNNL 152
L+ N L+ LP + N L+NL +L L N+L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
+GN+L L P + L L L+ NNNLT
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLA------------------------NNNLTELPAGL 167
Query: 160 LYHLNQLSTLYLAYNNL 176
L L L TL L N+L
Sbjct: 168 LNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 29/151 (19%)
Query: 4 NGNAAELSQLNFT-CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPS 62
N + AEL++L P L T + + S +P L L VLD+S+NRLT ++P
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLT-SLP- 116
Query: 63 EIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122
+G+LR L G L++LY L+GN+L L P + L L
Sbjct: 117 -LGALRGL------------------GELQELY---LKGNELKTLPPGLLTPTPKLEKLS 154
Query: 123 LSLNQLSGRLPQEVGN-LKNLVSLFLDNNNL 152
L+ N L+ LP + N L+NL +L L N+L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
+GN+L L P + L L L+ NNNLT
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLA------------------------NNNLTELPAGL 167
Query: 160 LYHLNQLSTLYLAYNNL 176
L L L TL L N+L
Sbjct: 168 LNGLENLDTLLLQENSL 184
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 84/215 (39%), Gaps = 57/215 (26%)
Query: 112 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST------------ 159
I L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 62 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 119
Query: 160 --------LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFL 211
L HL QL +LYL N + + + L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRL 153
Query: 212 NLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL-DRN 270
LD L L N++ +P + LT L +L LS N +S L R + LK LD L L +
Sbjct: 154 TKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISDL--RALRGLKNLDVLELFSQE 209
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
L P I + +NL N N S + PE++
Sbjct: 210 ALNKP----INHQSNLVVPNTVKNTDGSLVTPEII 240
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 29/151 (19%)
Query: 4 NGNAAELSQLNFT-CFPNLVTFRIWGTRFLSGRIPSETGALSRLKVLDLSYNRLTGTIPS 62
N + AEL++L P L T + + S +P L L VLD+S+NRLT ++P
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLT-SLP- 116
Query: 63 EIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLD 122
+G+LR L G L++LY L+GN+L L P + L L
Sbjct: 117 -LGALRGL------------------GELQELY---LKGNELKTLPPGLLTPTPKLEKLS 154
Query: 123 LSLNQLSGRLPQEVGN-LKNLVSLFLDNNNL 152
L+ N L+ LP + N L+NL +L L N+L
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
+GN+L L P + L L L+ NNNLT
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLA------------------------NNNLTELPAGL 167
Query: 160 LYHLNQLSTLYLAYNNL 176
L L L TL L N+L
Sbjct: 168 LNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 30/135 (22%)
Query: 23 TFRIWGTRFLS----GRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN 78
T + GT LS +P L L VLD+S+NRLT ++P +G+LR L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGL-------- 123
Query: 79 ILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN 138
G L++LY L+GN+L L P + L L L+ N L+ LP + N
Sbjct: 124 ----------GELQELY---LKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLN 169
Query: 139 -LKNLVSLFLDNNNL 152
L+NL +L L N+L
Sbjct: 170 GLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
+GN+L L P + L L L+ NN+LT
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLA------------------------NNDLTELPAGL 167
Query: 160 LYHLNQLSTLYLAYNNL 176
L L L TL L N+L
Sbjct: 168 LNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 30/135 (22%)
Query: 23 TFRIWGTRFLS----GRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN 78
T + GT LS +P L L VLD+S+NRLT ++P +G+LR L
Sbjct: 76 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGL-------- 124
Query: 79 ILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN 138
G L++LY L+GN+L L P + L L L+ N L+ LP + N
Sbjct: 125 ----------GELQELY---LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 170
Query: 139 -LKNLVSLFLDNNNL 152
L+NL +L L N+L
Sbjct: 171 GLENLDTLLLQENSL 185
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-L 93
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 94 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 153
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 154 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 193
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 132
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
+GN+L L P + L L L+ NNNLT
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLA------------------------NNNLTELPAGL 168
Query: 160 LYHLNQLSTLYLAYNNL 176
L L L TL L N+L
Sbjct: 169 LNGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 30/135 (22%)
Query: 23 TFRIWGTRFLS----GRIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYN 78
T + GT LS +P L L VLD+S+NRLT ++P +G+LR L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLP--LGALRGL-------- 123
Query: 79 ILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN 138
G L++LY L+GN+L L P + L L L+ N L+ LP + N
Sbjct: 124 ----------GELQELY---LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
Query: 139 -LKNLVSLFLDNNNL 152
L+NL +L L N+L
Sbjct: 170 GLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 217 LRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPI 276
L LS N L T+ T LT L+L +L+ L + G L L +L L N L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-L 92
Query: 277 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQ 336
P L LT L++ +N+L S L +LQ L + N L P + L +
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 337 LDLSHNFINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
L L++N + L + N+ + + +N+L IPK F
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 41 GALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPL-EFGNLKDLYDLRL 99
G L L LDLS+N+L ++P +L L L++S+N L S+PL L +L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
+GN+L L P + L L L+ NNNLT
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLA------------------------NNNLTELPAGL 167
Query: 160 LYHLNQLSTLYLAYNNL 176
L L L TL L N+L
Sbjct: 168 LNGLENLDTLLLQENSL 184
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 208 IGFLNLLDELRLSHNR---LDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDS 264
I FL+ L LRLSHNR LD + +L Y LD+S N+L + + +L++LD
Sbjct: 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY---LDVSHNRLQNISCCPMASLRHLD- 127
Query: 265 LSLDRNNLIGPIPPTIGYLTNLTSLNLG 292
LS + +++ P+ G LT LT L L
Sbjct: 128 LSFNDFDVL-PVCKEFGNLTKLTFLGLS 154
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKL 104
++KVLDL NR+ +IP ++ L+ L ELN++ N L F L L + L N
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 105 DGLIP 109
D P
Sbjct: 510 DCTCP 514
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 35 RIPSETGALSRLKVLDLSYNRL-TGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNL-K 92
++ T +S L+ LD+S N L + +L LNLS N+L GS+ F L
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPP 450
Query: 93 DLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNL 152
+ L L N++ IP + +L L L+++ NQL L +L ++L +N
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 153 TGPIPSTLY 161
P Y
Sbjct: 510 DCTCPGIRY 518
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNG-SIPLEFGNLKDLYDLRLQGNKL 104
L+ LD+S+NRL + SLR L+LS+N + + EFGNL L L L K
Sbjct: 102 LEYLDVSHNRLQNISCCPMASLR---HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Query: 105 DGLIPSSIGNLTNLTHLDLS 124
L +L + HL LS
Sbjct: 159 RQL------DLLPVAHLHLS 172
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 24/128 (18%)
Query: 73 LNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGLIPSSI--GNLTNLTHLDLSLNQL-S 129
LN + N+ S+ LK L L LQ N L ++ N+++L LD+SLN L S
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 130 GRLPQEVGNLKNLVSLFLDNNNLTGP---------------------IPSTLYHLNQLST 168
+ ++++ L L +N LTG IP + HL L
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477
Query: 169 LYLAYNNL 176
L +A N L
Sbjct: 478 LNVASNQL 485
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 241 LDLSSNQLSGLLPREVG-NLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
L+LSSN L+G + R + +K LD NN I IP + +L L LN+ NQL S
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLDL----HNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 28/162 (17%)
Query: 203 PIPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREV--GNLK 260
P PS+ FLN + N + L L +L L N L + N+
Sbjct: 350 PSPSSFTFLNF------TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403
Query: 261 YLDSLSLDRNNL-IGPIPPTIGYLTNLTSLNLGYNQLNSSI----PPELMNCSQLQNLAV 315
L++L + N+L T + ++ LNL N L S+ PP++ ++ +L
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV----KVLDL-- 457
Query: 316 NHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIPN 357
HN+ SIP ++ +L L++L+++ N QL +P+
Sbjct: 458 -HNNRIMSIPKDVTHLQALQELNVASN--------QLKSVPD 490
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
IG L L EL ++HN + +P NLT L LDLSSN++ + ++ L + L+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 267 LDRNNLIGP---IPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSG 322
L + + P I P L L L NQL S+P + + + LQ + ++ N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 240
Query: 323 SIP 325
S P
Sbjct: 241 SCP 243
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 89 GNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 128
G+LK L +L + N + +P NLTNL HLDLS N++
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
IG L L EL ++HN + +P NLT L LDLSSN++ + ++ L + L+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 267 LDRNNLIGP---IPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSG 322
L + + P I P L L L NQL S+P + + + LQ + ++ N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 239
Query: 323 SIP 325
S P
Sbjct: 240 SCP 242
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 89 GNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 128
G+LK L +L + N + +P NLTNL HLDLS N++
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
IG L L EL ++HN + +P NLT L LDLSSN++ + ++ L + L+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 267 LDRNNLIGP---IPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSG 322
L + + P I P L L L NQL S+P + + + LQ + ++ N
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238
Query: 323 SIP 325
S P
Sbjct: 239 SCP 241
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 89 GNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 128
G+LK L +L + N + +P NLTNL HLDLS N++
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
IG L L EL ++HN + +P NLT L LDLSSN++ + ++ L + L+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 267 LDRNNLIGP---IPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSG 322
L + + P I P L L L NQL S+P + + + LQ + ++ N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 240
Query: 323 SIP 325
S P
Sbjct: 241 SCP 243
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 89 GNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 128
G+LK L +L + N + +P NLTNL HLDLS N++
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 208 IGFLNLLDELRLSHNRLDG-PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
IG L L EL ++HN + +P NLT L LDLSSN++ + ++ L + L+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 267 LDRNNLIGP---IPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSG 322
L + + P I P L L L NQL S+P + + + LQ + ++ N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 239
Query: 323 SIP 325
S P
Sbjct: 240 SCP 242
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 89 GNLKDLYDLRLQGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 128
G+LK L +L + N + +P NLTNL HLDLS N++
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
E +H IG G YG VY+AQ + G ALKK+ + +E
Sbjct: 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE 41
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
E +H IG G YG VY+AQ + G ALKK+ + +E
Sbjct: 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE 41
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLSSGRVVALKKLHRSETEE 522
E +H IG G YG VY+AQ + G ALKK+ + +E
Sbjct: 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE 41
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 67/173 (38%), Gaps = 52/173 (30%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST--------------- 159
L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 62 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 119
Query: 160 -----LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLL 214
L HL QL +LYL N + + + L L
Sbjct: 120 SDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRLTKL 153
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
D L L N++ +P + LT L +L LS N +S L R + LK LD L L
Sbjct: 154 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 202
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 67/173 (38%), Gaps = 52/173 (30%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST--------------- 159
L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 85 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 160 -----LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLL 214
L HL QL +LYL N + + + L L
Sbjct: 143 SDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRLTKL 176
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
D L L N++ +P + LT L +L LS N +S L R + LK LD L L
Sbjct: 177 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 67/173 (38%), Gaps = 52/173 (30%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST--------------- 159
L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 85 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 160 -----LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLL 214
L HL QL +LYL N + + + L L
Sbjct: 143 SDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRLTKL 176
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
D L L N++ +P + LT L +L LS N +S L R + LK LD L L
Sbjct: 177 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 67/173 (38%), Gaps = 52/173 (30%)
Query: 115 LTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST--------------- 159
L N+T L L+ N+L+ P + NLKNL LFLD N +
Sbjct: 85 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI 142
Query: 160 -----LYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTIGFLNLL 214
L HL QL +LYL N + + + L L
Sbjct: 143 SDINGLVHLPQLESLYLGNNKITD--------------------------ITVLSRLTKL 176
Query: 215 DELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 267
D L L N++ +P + LT L +L LS N +S L R + LK LD L L
Sbjct: 177 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 225
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKL 104
R+KVLDL N++ +IP ++ L L ELN++ N L F L L + L N
Sbjct: 422 RIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 105 DGLIP 109
D P
Sbjct: 481 DCSCP 485
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 45 RLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKL 104
+ +L++S N ++ S+I SL L L +S+N + F ++L L L NKL
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 105 DGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHL 163
+ S NL HLDLS N + +E GN+ L L L +L + HL
Sbjct: 82 ---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 164 N 164
N
Sbjct: 139 N 139
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 61 PSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLDGL--IPSSIGNLTNL 118
PS+I L L+ S N+L ++ G+L +L L LQ N+L L I + +L
Sbjct: 320 PSKISPF---LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 119 THLDLSLNQLS-GRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLV 177
LD+S N +S + K+L+SL + +N LT I L ++ L L ++N +
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL-HSNKI 433
Query: 178 GPLPKEV 184
+PK+V
Sbjct: 434 KSIPKQV 440
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 34/182 (18%)
Query: 149 NNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTI 208
NN LT + HL +L TL L N L KE+ I
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQL-----KEL-----------------SKIAEMT 370
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTY---LTSLDLSSNQLSGLLPREV-GNLKYLDS 264
+ L +L +S N + G+ ++ L SL++SSN L+ + R + +K LD
Sbjct: 371 TQMKSLQQLDISQNSVS--YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDL 428
Query: 265 LSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSGS 323
+N I IP + L L LN+ NQL S+P + + + LQ + ++ N S
Sbjct: 429 ----HSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483
Query: 324 IP 325
P
Sbjct: 484 CP 485
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT 153
+ ++RL+ N + + P + L +DLS NQ+S P L++L SL L N +T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 154 GPIPSTLY 161
+P +L+
Sbjct: 94 -ELPKSLF 100
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
+ E+RL N + P L +DLS+NQ+S L P L+ L+SL L N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 94 LYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLT 153
+ ++RL+ N + + P + L +DLS NQ+S P L++L SL L N +T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 154 GPIPSTLY 161
+P +L+
Sbjct: 94 -ELPKSLF 100
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 214 LDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNL 272
+ E+RL N + P L +DLS+NQ+S L P L+ L+SL L N +
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
L L+ NKL L LT LT L LS NQ+ LP V L L L+L N L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQS- 90
Query: 156 IPSTLY-HLNQLSTLYLAYNNL 176
+P+ ++ L QL L L N L
Sbjct: 91 LPNGVFDKLTQLKELALDTNQL 112
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 44/122 (36%)
Query: 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRL 99
TG S L+L N+L L L +L+LS N + F L L L L
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPST 159
NKL L LT L L L NQL L +L ++L N P
Sbjct: 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
Query: 160 LY 161
Y
Sbjct: 144 DY 145
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 239 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 298
T L+L SN+L L L L LSL +N + LT LT L L N+L S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 299 SIPPELMNCSQLQNLAVNHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIP 349
+QL+ LA++ N L S+P I L L+++ L N + + P
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 216 ELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRNNLIGP 275
L L N+L LT LT L LS NQ+ L L L L L N L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 276 IPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSGSIP 325
LT L L L NQL S+P + + + LQ + ++ N S P
Sbjct: 92 PNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 37/91 (40%)
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDRN 270
L L +L LS N++ LT LT L L N+L L L L L+LD N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 271 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 301
L LT+L + L N + S P
Sbjct: 111 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVS 144
P F L L L L N+L L LT LT L L+ NQL NLK+L
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 114
Query: 145 LFLDNNNLTGPIPSTLY---HLNQLSTLYLAYNNL 176
++L NN LY ++Q L Y NL
Sbjct: 115 IWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNL 149
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%)
Query: 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRL 99
TG + +VL L N++T P L L L+L N L F L L L L
Sbjct: 34 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 93
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDL 123
N+L + + NL +LTH+ L
Sbjct: 94 NDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
IP+T L L D N++ P LT LT LDL +NQL+ L L L
Sbjct: 36 IPTTTQVLYLYD------NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 89
Query: 264 SLSLDRNNLIGPIPPTIGYLTNLTSL 289
LSL+ N L IP G NL SL
Sbjct: 90 QLSLNDNQLKS-IP--RGAFDNLKSL 112
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
L L N++ L P LT LT LDL NQL+ LP V L L L L++N L
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 156 IPSTLYHLNQLSTLYLAYN 174
+L L+ ++L N
Sbjct: 102 PRGAFDNLKSLTHIWLLNN 120
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 35 RIPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDL 94
RIPS L RL + +L RL+ L +L LNL+ L IP L L
Sbjct: 158 RIPS----LRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL 209
Query: 95 YDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTG 154
+L L GN L + P S L +L L + +Q+ NL++LV + L +NNLT
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268
Query: 155 PIPSTLYH-LNQLSTLYLAYN 174
+P L+ L+ L ++L +N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 283 LTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLSGSIPSEIGNLIHLRQLDLSHN 342
L+NL LNL L P L +L L ++ N LS P L+HL++L + +
Sbjct: 184 LSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 343 FINGTIPSQLGKIPNVSEVDVSKNNLSGVIPKSVF 377
I + + ++ E++++ NNL+ ++P +F
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 451 NPNTREMKKCADEFSIWDYDGRITFEEMIQATEDFHIKYCIGTGGYGSVYRA-QLSSGRV 509
NP R++KK DE S+ Q E F + +G G YGSVY+A +G++
Sbjct: 9 NPPRRQLKKL-DEDSL-----------TKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQI 56
Query: 510 VALKKLH-----RSETEELAFLETSSTD--FRHYNSHTDNDD 544
VA+K++ + +E++ ++ + ++Y S+ N D
Sbjct: 57 VAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTD 98
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVS 144
P F L L L L N+L L LT LT L L+ NQL NLK+L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106
Query: 145 LFLDNNNLTGPIPSTLY---HLNQLSTLYLAYNNL 176
++L NN LY ++Q L Y NL
Sbjct: 107 IWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNL 141
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%)
Query: 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRL 99
TG + +VL L N++T P L L L+L N L F L L L L
Sbjct: 26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDL 123
N+L + + NL +LTH+ L
Sbjct: 86 NDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
IP+T L L D N++ P LT LT LDL +NQL+ L L L
Sbjct: 28 IPTTTQVLYLYD------NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 264 SLSLDRNNL 272
LSL+ N L
Sbjct: 82 QLSLNDNQL 90
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
L L N++ L P LT LT LDL NQL+ LP V L L L L++N L
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 156 IPSTLYHLNQLSTLYLAYN 174
+L L+ ++L N
Sbjct: 94 PRGAFDNLKSLTHIWLLNN 112
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 479 IQATEDFHIKYCIGTGGYGSVYRA-QLSSGRVVALKKLHR 517
++ +++ IK+ IG G YG VY A ++ + VA+KK++R
Sbjct: 24 VKVPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNR 63
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 44
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 85 PLEFGNLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVS 144
P F L L L L N+L L LT LT L L+ NQL NL++L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTH 106
Query: 145 LFLDNNNLTGPIPSTLY---HLNQLSTLYLAYNNL 176
++L NN LY ++Q L Y NL
Sbjct: 107 IWLLNNPWDCACSDILYLSRWISQHPWLVFGYLNL 141
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%)
Query: 40 TGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRL 99
TG + +VL L NR+T P L L L+L N L F L L L L
Sbjct: 26 TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 100 QGNKLDGLIPSSIGNLTNLTHLDL 123
N+L + + NL +LTH+ L
Sbjct: 86 NDNQLKSIPRGAFDNLRSLTHIWL 109
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 204 IPSTIGFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLD 263
IP+T L L D NR+ P LT LT LDL +NQL+ L L L
Sbjct: 28 IPTTTQVLYLYD------NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 264 SLSLDRNNL 272
LSL+ N L
Sbjct: 82 QLSLNDNQL 90
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 97 LRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLVSLFLDNNNLTGP 155
L L N++ L P LT LT LDL NQL+ LP V L L L L++N L
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 156 IPSTLYHLNQLSTLYLAYN 174
+L L+ ++L N
Sbjct: 94 PRGAFDNLRSLTHIWLLNN 112
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 44
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 43
>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii,
25.M01780 Or Tgme49_007820
Length = 458
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 480 QATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHR 517
Q + + I++ IGTG YG V A RVVA+KK+ R
Sbjct: 50 QIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILR 88
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 43
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 43
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 44
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 44
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 45
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 42
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 43
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 42
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 48
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 44
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 44
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 42
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
+ E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 42
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 40
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 45
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 48
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 40
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 40
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 40
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 40
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 478 MIQATEDFHIKYCIGTGGYGSVYRAQ--LSSGRVVALKKLHRSETEE 522
+ +A + + IG G YG V++A+ + GR VALK++ EE
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE 52
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 41
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 483 EDFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKLHRSETE 521
E+F IG G YG VY+A+ +G VVALKK+ R +TE
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-RLDTE 42
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKL----HRSETEELAFLETSSTDFRHYNS 538
DF IG+GG+G V++A+ G+ ++++ ++E E A + + HYN
Sbjct: 13 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRVKYNNEKAEREVKALAKLDHVNIVHYNG 72
Query: 539 HTDNDD----SSDEHLANNEHFLSAPEN 562
D D +SD+ L ++++ PEN
Sbjct: 73 CWDGFDYDPETSDDSLESSDY---DPEN 97
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 478 MIQATEDFHIKYCIGTGGYGSVYRAQ--LSSGRVVALKKLHRSETEE 522
+ +A + + IG G YG V++A+ + GR VALK++ EE
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE 52
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 116/298 (38%), Gaps = 24/298 (8%)
Query: 42 ALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE--FGNLKDLYDLRL 99
LS L +L L YN+ L +L L L+ L+G++ F L L L L
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 100 QGNKLDGLIPSSIG-NLTNLTHLDLSLNQLSGRLPQEVGNLK-------NLVSLFLDNNN 151
+ N + + P+S N+ LDL+ N++ +++ N + L S+ L + N
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 152 ---LTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEVGXXXXXXXXXXXXXXXTGPIPSTI 208
L + ++TL L+ N + K + + S+
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 209 GFLNLLDELRLSHNRLDGPIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 268
G N D + L+ + + + DLS +++ LL + L+ L+L
Sbjct: 257 GHTNFKDPDNFTFKGLEA---------SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 269 RNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQLQNLAVNHNSLSGSIP 325
+N + LT+L L L NQL S+P + + + LQ + ++ N S P
Sbjct: 308 QNEINKIDDNAFWGLTHLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 264 SLSLDRNNL-------IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN 316
SLS DRN + + IP G + SL+L N++ +L C LQ L +
Sbjct: 27 SLSCDRNGICKGSSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 84
Query: 317 HNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
N ++ +L L LDLS+N+++
Sbjct: 85 SNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IPS G +K LDLS NR+T S++ +L L L+ N +N F +L L
Sbjct: 46 IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDL 123
L L N L L S L++LT L+L
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 478 MIQATEDFHIKYCIGTGGYGSVYRAQ--LSSGRVVALKKLHRSETEE 522
+ +A + + IG G YG V++A+ + GR VALK++ EE
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE 52
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 264 SLSLDRNNL-------IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVN 316
SLS DRN + + IP G + SL+L N++ +L C LQ L +
Sbjct: 1 SLSCDRNGICKGSSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 58
Query: 317 HNSLSGSIPSEIGNLIHLRQLDLSHNFIN 345
N ++ +L L LDLS+N+++
Sbjct: 59 SNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IPS G +K LDLS NR+T S++ +L L L+ N +N F +L L
Sbjct: 20 IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDL 123
L L N L L S L++LT L+L
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 484 DFHIKYCIGTGGYGSVYRAQLS-SGRVVALKKL----HRSETEELAFLETSSTDFRHYNS 538
DF IG+GG+G V++A+ G+ +K++ ++E E A + + HYN
Sbjct: 12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNG 71
Query: 539 HTDNDDSSDEHLANN 553
D D E + N
Sbjct: 72 CWDGFDYDPETSSKN 86
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 9/159 (5%)
Query: 30 RFLSGR--IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLE 87
+ SGR + L +L S +L +P + S LL+L S+N L + E
Sbjct: 2 KLASGRSVVSCPANCLCASNILSCSKQQLPN-VPQSLPSYTALLDL--SHNNL-SRLRAE 57
Query: 88 FG--NLKDLYDLRLQGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSL 145
+ L +L+ L L N L+ + + + NL +LDLS N L +L+ L L
Sbjct: 58 WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
Query: 146 FLDNNNLTGPIPSTLYHLNQLSTLYLAYNNLVGPLPKEV 184
L NN++ + + QL LYL+ N + P E+
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVEL 155
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 214 LDELRLSHNRLDG-------PIPPTIGNLTYLTSLDLSSNQLSGLLPREVGNLKYLDSLS 266
L L LSHN L+ P+P NL YL DLSSN L L +L+ L+ L
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVP----NLRYL---DLSSNHLHTLDEFLFSDLQALEVLL 118
Query: 267 LDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM 305
L N+++ + L L L NQ+ S P EL+
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELI 156
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 479 IQATEDFHIKYCIGTGGYGSVYRA-QLSSGRVVALKKLHR 517
+ +++ IK+ IG G YG VY A ++ + VA+KK++R
Sbjct: 22 VHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNR 61
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IPS G + +K LDLS+N++T ++ + +L L L + +N F +L L
Sbjct: 46 IPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 103
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDL 123
L L N L L S G L++L +L+L
Sbjct: 104 HLDLSDNHLSSLSSSWFGPLSSLKYLNL 131
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 36 IPSETGALSRLKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLY 95
IPS G + +K LDLS+N++T ++ + +L L L + +N F +L L
Sbjct: 20 IPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77
Query: 96 DLRLQGNKLDGLIPSSIGNLTNLTHLDL 123
L L N L L S G L++L +L+L
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 46 LKVLDLSYNRLTGTIPSEIGSLRDLLELNLSYNILNGSIPLEFGNLKDLYDLRLQGNKLD 105
LK + RLT + + +R+L L L NI L F +L++L + NKL
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHL-FDDLENLESIEFGSNKLR 183
Query: 106 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLVSLFLDNNNLTGPIPSTLY 161
+ G + L L+L+ NQL L +L ++L N P Y
Sbjct: 184 QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 239
>pdb|3S88|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
Length = 298
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 369 SGVIPKSVFRVPGLKWSEN--NLEVENPVISENAPPP 403
SGV PK V G +W+EN NLE++ P SE PPP
Sbjct: 75 SGVPPKVVSYEAG-EWAENCYNLEIKKPDGSECLPPP 110
>pdb|3VE0|I Chain I, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 298
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 369 SGVIPKSVFRVPGLKWSEN--NLEVENPVISENAPPP 403
SGV PK V G +W+EN NLE++ P SE PPP
Sbjct: 75 SGVPPKVVSYEAG-EWAENCYNLEIKKPDGSECLPPP 110
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 46/215 (21%)
Query: 211 LNLLDELRLSHNRLDGPIPPTIGNLT--------YLTSLDLSSNQLSGLLPREVGNLKYL 262
N + EL +S N+L + N+T LT LD SSN+L+ + + L Y
Sbjct: 179 FNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYF 238
Query: 263 DSLSLDRNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM-----NCSQLQNLAVNH 317
D N L T+ LT L + +++ + +L+ C +++ L V H
Sbjct: 239 DC---SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH 295
Query: 318 NSLSGSIPSEIGNLIHLRQLDLSHN------FINGTIPSQLGKIPNVSEVDVSKN----N 367
N+ + + + +LDLS N ++N T ++E+DVS N +
Sbjct: 296 NTQLYLLDCQAAG---ITELDLSQNPKLVYLYLNNT---------ELTELDVSHNTKLKS 343
Query: 368 LSGVIP-----KSVFRVPGLKWSENNLEVENPVIS 397
LS V SV ++P L NN E E I+
Sbjct: 344 LSCVNAHIQDFSSVGKIPALN---NNFEAEGQTIT 375
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 74
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 74
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 51
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 478 MIQATEDFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKL 515
M ED+ + Y IGTG YG + + S G+++ K+L
Sbjct: 1 MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKEL 39
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
AT + IG G YG+VY+A+ SG VALK + EE
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEE 44
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
AT + IG G YG+VY+A+ SG VALK + EE
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEE 44
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEE 522
AT + IG G YG+VY+A+ SG VALK + EE
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEE 44
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRA-QLSSGRVVALKKL 515
+ DF +K +G G YG V A +G +VA+KK+
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKI 44
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 51
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRA-QLSSGRVVALKKL 515
+ DF +K +G G YG V A +G +VA+KK+
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKI 44
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 478 MIQATEDFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKL 515
M ED+ + Y IGTG YG + + S G+++ K+L
Sbjct: 1 MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKEL 39
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 48
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 482 TEDFHIKYCIGTGGYGSVYRA-QLSSGRVVALKKL 515
+ DF +K +G G YG V A +G +VA+KK+
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKI 44
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 478 MIQATEDFHIKYCIGTGGYGSVYRAQLSS-GRVVALKKL 515
M ED+ + Y IGTG YG + + S G+++ K+L
Sbjct: 1 MPSRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKEL 39
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 47
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 48
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 471 GRITFEEMIQAT-EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEE 522
G + FE+ E+ H+K+ +G G +GSV Q ++G VVA+KKL S E
Sbjct: 1 GAMAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEH 60
Query: 523 LAFLE 527
L E
Sbjct: 61 LRDFE 65
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 48
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 48
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 51
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 12 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 63
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 51
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 49
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 49
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 48
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 29 IGNGSFGVVYQAKLCDSGELVAIKKV 54
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + + ++ALK L +++ E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEK 48
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 47 IGNGSFGVVYQAKLCDSGELVAIKKV 72
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 48
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 41 IGNGSFGVVYQAKLCDSGELVAIKKV 66
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 48
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 36 IGNGSFGVVYQAKLCDSGELVAIKKV 61
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 49
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 59
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 50
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 65
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKV 65
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 51
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 7 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 58
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 11 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 62
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 39 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 90
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 50
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 52
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 13 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 64
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 11 EERHLKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 62
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 11 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 62
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 59
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 53
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 26 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 77
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 59
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 26 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 77
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 53
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 6 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 57
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKV 65
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 53
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 33 IGNGSFGVVYQAKLCDSGELVAIKKV 58
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV 87
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 9 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 60
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 483 EDFHIKYC--IGTGGYGSVYRA-----QLSSGRVVALKKLHRSETEELAFLE 527
E+ H+K+ +G G +GSV Q ++G VVA+KKL S E L E
Sbjct: 15 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFE 66
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 51
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 32 IGNGSFGVVYQAKLCDSGELVAIKKV 57
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 56 IGNGSFGVVYQAKLCDSGELVAIKKV 81
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV 87
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 64 IGNGSFGVVYQAKLCDSGELVAIKKV 89
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 53
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 66 IGNGSFGVVYQAKLCDSGELVAIKKV 91
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEK 53
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 491 IGTGGYGSVYRAQLS-SGRVVALKKL 515
IG G +G VY+A+L SG +VA+KK+
Sbjct: 107 IGNGSFGVVYQAKLCDSGELVAIKKV 132
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 483 EDFHIKYCIGTGGYGSVYRA-QLSSGRVVALKKLHRSETEE 522
+DF I +G G +G+VY A + S +VALK L +S+ E+
Sbjct: 23 DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEK 63
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 481 ATEDFHIKYCIGTGGYGSVYRAQLSSGR-VVALKKLHRSETEE 522
A EDF I +G G +G+VY A+ + ++ALK L +++ E+
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEK 45
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 310 LQNLAVNHNSLSGSIPSEIGNLI----HLRQLDLSHNFINGTIPSQLGKIPNVSEVDVSK 365
L+ + S+S I E G LI H + + L+H+F GK+P+ E+ V K
Sbjct: 5 LKGITCVETSIS-HIDGEKGRLIYRGHHAKDIALNHSFEEAAYLILFGKLPSTEELQVFK 63
Query: 366 NNLSGV--IPKSVFR-VPGLKWSENNLEVENPVISENAPPPQTQHFKGNKGKNQKIVTPL 422
+ L+ +P+ + R + L + +++ V V+S T H K + +TP
Sbjct: 64 DKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALGENTYTFHPKTEEAIRLIAITPS 123
Query: 423 V 423
+
Sbjct: 124 I 124
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 18/74 (24%)
Query: 282 YLTNLTSLNLGYNQLNSSIPPELMNCSQLQNLAVNHNSLS--GSIPS------------- 326
+ TNL L+L +NQ++ P L + ++L+ L+VN N L IPS
Sbjct: 61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNEL 118
Query: 327 -EIGNLIHLRQLDL 339
+ +LIHL+ L++
Sbjct: 119 RDTDSLIHLKNLEI 132
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 479 IQATEDFHIKYCIGTGGYGSVYRAQ-LSSGRVVALKKLHRSETEELA 524
Q+ E + +G G YG V + + +GR+VA+KK S+ +++
Sbjct: 21 FQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,872,603
Number of Sequences: 62578
Number of extensions: 773297
Number of successful extensions: 2863
Number of sequences better than 100.0: 249
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 708
length of query: 599
length of database: 14,973,337
effective HSP length: 104
effective length of query: 495
effective length of database: 8,465,225
effective search space: 4190286375
effective search space used: 4190286375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)